Citrus Sinensis ID: 041747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEc
Coil and Loop (DISEMBL)
MDCVSPVLDILTRLWdctatngsYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKClgscciyncysgykiGKKVINKIRDVKELIKKGEIFENlqvtyklprptvdgmvmEETVGFDSMLDEVWGHIADYRCRIIglygiggvgkTTLLKKLNnkfldinhhfdLVIWVA
Flexible Loop (DISEMBL)
MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEeeeqqqrkrkkvvqgwfdavesqikevdvisrkgeqevqkkclgsccIYNCYSGYKIGKKVINKIRDVKELIkkgeifenlqvtyklprptvdGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNkfldinhhFDLVIWVA
Low Complexity Region (SEG)
MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSrrveeeeqqqrkrkkvvqGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGkttllkklnnkflDINHHFDLVIWVA
Disordered region (IsUnstruct)
***VSPVLDILTRLWDCTATNGSYIRHLK************************************VVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV*
Disordered Region (DISOPRED)
MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFEN*********************GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA
Disordered Region (DISEMBL)
MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSE******************************QGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA
Disordered Region (DISPRO)
*DCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDCVSPVLDILTRLWDCTATNGSYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQRKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q9LMP6	851	Probable disease resistan	yes	no	0.905	0.224	0.381	2e-29
Q8RXS5	888	Probable disease resistan	no	no	0.895	0.212	0.358	3e-29
O64789	925	Probable disease resistan	no	no	0.909	0.207	0.401	1e-28
Q9FG91	848	Probable disease resistan	no	no	0.938	0.233	0.346	1e-28
Q940K0	889	Probable disease resistan	no	no	0.924	0.219	0.383	2e-28
O64973	889	Disease resistance protei	no	no	0.962	0.228	0.379	2e-27
Q9C8K0	854	Probable disease resistan	no	no	0.947	0.234	0.363	2e-27
Q9FLB4	874	Putative disease resistan	no	no	0.919	0.221	0.338	4e-27
Q8L3R3	885	Disease resistance protei	no	no	0.909	0.216	0.386	8e-27
O22727	967	Probable disease resistan	no	no	0.919	0.200	0.383	2e-26

>sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 3/194 (1%)

Query: 17  CTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVES 76
           C   + +YI  ++ NL +L    +ELE+  +D+ RRV  EE +  +R   VQGW   V+ 
Sbjct: 21  CLFGDRNYILKMEANLEALQNTMQELEERRDDLLRRVVIEEDKGLQRLAQVQGWLSRVKD 80

Query: 77  QIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENLQ 136
              +V+ + +    + ++ CL   C  N  SG   G  V+ K++ V+ L+ KG +FE   
Sbjct: 81  VCSQVNDLLKAKSIQTERLCLCGYCSKNFISGRNYGINVLKKLKHVEGLLAKG-VFE--V 137

Query: 137 VTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK 196
           V  K+P P V+   ++ TVG D+M+   W  +     R +GLYG+GGVGKTTLL  +NNK
Sbjct: 138 VAEKIPAPKVEKKHIQTTVGLDAMVGRAWNSLMKDERRTLGLYGMGGVGKTTLLASINNK 197

Query: 197 FLDINHHFDLVIWV 210
           FL+  + FDLVIWV
Sbjct: 198 FLEGMNGFDLVIWV 211

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 9/198 (4%)

Query: 16  DCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVE 75
            C   NG YI  L++NL +L  A  ++E   ED+ R++  EE++  +R  VVQGW   VE
Sbjct: 20  SCLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERRGLQRLSVVQGWVSKVE 79

Query: 76  SQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGE---IF 132
           + +  V+ + R    +VQ+ CL   C  N  S Y+ GK+V+  I +V+ L  +G+   + 
Sbjct: 80  AIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIEEVEVLRYQGDFAVVA 139

Query: 133 ENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKK 192
           E +       RPT         V  D ML+  W  + +    I+GL+G+GGVGKTTLL  
Sbjct: 140 ERVDAARVEERPT------RPMVAMDPMLESAWNRLMEDEIGILGLHGMGGVGKTTLLSH 193

Query: 193 LNNKFLDINHHFDLVIWV 210
           +NN+F  +   FD+VIW+
Sbjct: 194 INNRFSRVGGEFDIVIWI 211

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 12/204 (5%)

Query: 11  LTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDL---SEDVSRRVEEEEQQQRKRKKVV 67
           + R++DC     SYIR L+KNL +L   +RE+EDL     +V  +V  EE + ++R + V
Sbjct: 16  MNRIFDCL-IGKSYIRTLEKNLRAL---QREMEDLRATQHEVQNKVAREESRHQQRLEAV 71

Query: 68  QGWFDAVESQIKEVDVISRKGEQEVQKKCL-GSCCIYNCYSGYKIGKKVINKIRDVKELI 126
           Q W D V S   E   +      E+QK CL G C  Y C S YK GKKV   + +VK L 
Sbjct: 72  QVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCTKYVC-SSYKYGKKVFLLLEEVKILK 130

Query: 127 KKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGK 186
            +G   E   V+   PR  V+    + T+G + ML++ W  + +    I+GL+G+GGVGK
Sbjct: 131 SEGNFDE---VSQPPPRSEVEERPTQPTIGQEEMLEKAWNRLMEDGVGIMGLHGMGGVGK 187

Query: 187 TTLLKKLNNKFLDINHHFDLVIWV 210
           TTL KK++NKF +I   FD+VIW+
Sbjct: 188 TTLFKKIHNKFAEIGGTFDIVIWI 211

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 110/202 (54%), Gaps = 4/202 (1%)

Query: 10  ILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQG 69
           I T    C  ++ +YI  ++ NL++L +   EL++  +D+  RV  EE +  +R  +V G
Sbjct: 13  IFTAACGCFLSDSNYIHLMESNLDALQKTMEELKNGRDDLLARVSIEEDKGLQRLALVNG 72

Query: 70  WFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKG 129
           W   V+    E   +      E  + CL   C  +C S Y  G KV+  + +VKEL+ K 
Sbjct: 73  WLSRVQIVESEFKDLLEAMSIETGRLCLFGYCSEDCISSYNYGGKVMKNLEEVKELLSK- 131

Query: 130 EIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTL 189
              +N +V  +   P  +   ++ TVG D+M+   W  + D   R +GLYG+GG+GKTTL
Sbjct: 132 ---KNFEVVAQKIIPKAEKKHIQTTVGLDTMVGIAWESLIDDEIRTLGLYGMGGIGKTTL 188

Query: 190 LKKLNNKFLDINHHFDLVIWVA 211
           L+ LNNKF+++   FD+VIWV 
Sbjct: 189 LESLNNKFVELESEFDVVIWVV 210

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 114/201 (56%), Gaps = 6/201 (2%)

Query: 11  LTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGW 70
           L R+++C     SYIR L+KNL +L     +L  +  +V  +V  +E + ++R + VQ W
Sbjct: 14  LNRIFNCL-IGKSYIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQRRLEAVQVW 72

Query: 71  FDAVESQIKEVDVISRKGEQEVQKKCL-GSCCIYNCYSGYKIGKKVINKIRDVKELIKKG 129
            D V S   E   +      E+QK CL G C  Y C S YK GKKV   + +VK+L  +G
Sbjct: 73  LDRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVC-SSYKYGKKVFLLLEEVKKLNSEG 131

Query: 130 EIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTL 189
              E   V+   PR  V+    + T+G + ML++ W  + +    I+GL+G+GGVGKTTL
Sbjct: 132 NFDE---VSQPPPRSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMGGVGKTTL 188

Query: 190 LKKLNNKFLDINHHFDLVIWV 210
            KK++NKF +I   FD+VIW+
Sbjct: 189 FKKIHNKFAEIGGTFDIVIWI 209

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 116/208 (55%), Gaps = 5/208 (2%)

Query: 6   PVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRK-RK 64
           P   ++++        GSYI +L KNL SL +A R L+    DV RR+E EE   R+ R 
Sbjct: 10  PCDQVVSQFSQLLCVRGSYIHNLSKNLASLQKAMRMLKARQYDVIRRLETEEFTGRQQRL 69

Query: 65  KVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKE 124
             VQ W  +V     + + + R  E E+Q+ CL   C  +    Y+ GK+VI  +++V+ 
Sbjct: 70  SQVQVWLTSVLIIQNQFNDLLRSNEVELQRLCLCGFCSKDLKLSYRYGKRVIMMLKEVES 129

Query: 125 LIKKGEIFENLQVTYKLPRPTVDGMVMEET-VGFDSMLDEVWGHIADYRCRIIGLYGIGG 183
           L  +G  F+   V+   P   VD +  + T VG + ML++ W  + +    I+GLYG+GG
Sbjct: 130 LSSQG-FFD--VVSEATPFADVDEIPFQPTIVGQEIMLEKAWNRLMEDGSGILGLYGMGG 186

Query: 184 VGKTTLLKKLNNKFLDINHHFDLVIWVA 211
           VGKTTLL K+NNKF  I+  FD+VIWV 
Sbjct: 187 VGKTTLLTKINNKFSKIDDRFDVVIWVV 214

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480 OS=Arabidopsis thaliana GN=At1g51480 PE=2 SV=2

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 117/209 (55%), Gaps = 9/209 (4%)

Query: 6   PVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKK 65
           P   I T    C  ++ +YI  ++ NL+ L     EL++  +D+ RRV  EE +  ++  
Sbjct: 9   PWNKIFTAACGCFFSDRNYIHKMEANLDDLHTTMEELKNGRDDLLRRVSIEEDKGLQQLA 68

Query: 66  VVQGWF---DAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDV 122
            V+GW    + VES+ K  D++  K   E  + CL   C  NC S Y  G+KV+  + +V
Sbjct: 69  QVKGWISRVEIVESRFK--DLLEDKS-TETGRLCLFGFCSENCISSYNYGEKVMKNLEEV 125

Query: 123 KELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIG 182
           KEL+ K   FE   V +K+P P V+   +  TVG  +M++  W  + +   R + L+G+G
Sbjct: 126 KELLSKKH-FE--VVAHKIPVPKVEEKNIHTTVGLYAMVEMAWKSLMNDEIRTLCLHGMG 182

Query: 183 GVGKTTLLKKLNNKFLDINHHFDLVIWVA 211
           GVGKTTLL  +NNKF+++   FD+VIWV 
Sbjct: 183 GVGKTTLLACINNKFVELESEFDVVIWVV 211

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 115/198 (58%), Gaps = 4/198 (2%)

Query: 14  LWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDA 73
           L  C + N +  R+L  ++ +L +  R+LE   +D+ +R++ +E +       VQ W   
Sbjct: 18  LTSCLSRNQNRFRNLVDHVAALKKTVRQLEARRDDLLKRIKVQEDRGLNLLDEVQQWLSE 77

Query: 74  VESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFE 133
           VES++ E   I  + ++E+   C G  C   C   Y   K VINK++DV+ L+ KG +F+
Sbjct: 78  VESRVCEAHDILSQSDEEIDNLCCGQYCSKRCKYSYDYSKSVINKLQDVENLLSKG-VFD 136

Query: 134 NLQVTYKLPRPTVDG-MVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKK 192
             +V  K P P V+  +  +E VG +++++  W  + +    ++G+YG+GGVGKTTLL +
Sbjct: 137 --EVAQKGPIPKVEERLFHQEIVGQEAIVESTWNSMMEVGVGLLGIYGMGGVGKTTLLSQ 194

Query: 193 LNNKFLDINHHFDLVIWV 210
           +NNKF  +++ FD+ IWV
Sbjct: 195 INNKFRTVSNDFDIAIWV 212

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  120 bits (301), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 114/199 (57%), Gaps = 7/199 (3%)

Query: 15  WDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEE-QQQRKRKKVVQGWFDA 73
           W C +  GSYI++L +NL SL +A   L    +DV  R+  EE    R+R   VQ W   
Sbjct: 21  WLCVS--GSYIQNLSENLASLQKAMGVLNAKRDDVQGRINREEFTGHRRRLAQVQVWLTR 78

Query: 74  VESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFE 133
           +++   + + +      E+Q+ CL   C  N    Y  GK+VI  +R+V+ L  +G +F+
Sbjct: 79  IQTIENQFNDLLSTCNAEIQRLCLCGFCSKNVKMSYLYGKRVIVLLREVEGLSSQG-VFD 137

Query: 134 NLQVTYKLPRPTVDGMVMEET-VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKK 192
              VT   P   V+ + ++ T VG DSMLD+VW  + + +  I+GLYG+GGVGKTTLL +
Sbjct: 138 --IVTEAAPIAEVEELPIQSTIVGQDSMLDKVWNCLMEDKVWIVGLYGMGGVGKTTLLTQ 195

Query: 193 LNNKFLDINHHFDLVIWVA 211
           +NNKF  +   FD+VIWV 
Sbjct: 196 INNKFSKLGGGFDVVIWVV 214

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 115/206 (55%), Gaps = 12/206 (5%)

Query: 10  ILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDL---SEDVSRRVEEEEQQQRKRKKV 66
           +L R+  C    G YIR+L+KNL +L   +RE+EDL     +V  +V  EE + ++R + 
Sbjct: 14  MLDRIIRCLCGKG-YIRNLEKNLRAL---QREMEDLRATQHEVQNKVAREESRHQQRLEA 69

Query: 67  VQGWFDAVESQIKEVDVISRKGEQEVQKKCL-GSCCIYNCYSGYKIGKKVINKIRDVKEL 125
           VQ W D V S   E   +      E+QK CL G C  Y C S YK GK+V   + +V +L
Sbjct: 70  VQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCSKYVC-SSYKYGKRVFLLLEEVTKL 128

Query: 126 IKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVG 185
             +G   E   V+   PR  V+    + T+G + ML + W  + +    I+GL+G+GGVG
Sbjct: 129 KSEGNFDE---VSQPPPRSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVG 185

Query: 186 KTTLLKKLNNKFLDINHHFDLVIWVA 211
           KTTL KK++NKF +    FD+VIW+ 
Sbjct: 186 KTTLFKKIHNKFAETGGTFDIVIWIV 211

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
147815260	2471	hypothetical protein VITISV_010987 [Viti	0.981	0.083	0.485	2e-51
225465083	920	PREDICTED: probable disease resistance p	0.985	0.226	0.514	3e-51
359494505	796	PREDICTED: probable disease resistance p	0.985	0.261	0.483	1e-49
359494493	855	PREDICTED: probable disease resistance p	0.990	0.244	0.502	2e-49
297743218	927	unnamed protein product [Vitis vinifera]	0.981	0.223	0.495	3e-49
147858210	892	hypothetical protein VITISV_011750 [Viti	0.990	0.234	0.502	3e-49
225442515	904	PREDICTED: probable disease resistance p	0.981	0.228	0.495	5e-49
451799006	1006	disease resistance protein RPS5-like pro	0.990	0.207	0.497	6e-49
296082677	723	unnamed protein product [Vitis vinifera]	0.990	0.289	0.497	6e-49
359494489	877	PREDICTED: disease resistance protein RP	0.990	0.238	0.497	6e-49

>gi|147815260|emb|CAN74430.1| hypothetical protein VITISV_010987 [Vitis vinifera]

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 102/210 (48%), Positives = 139/210 (66%), Gaps = 3/210 (1%)

Query: 1    MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
            MDCV+P++D+ TRLW C + + SY+  L++NL SL     EL+++ EDV RRVE+ E++Q
Sbjct: 1627 MDCVTPIMDVATRLWSCASKHSSYVIDLQENLCSLRNEMEELKNVGEDVKRRVEDAEKRQ 1686

Query: 61   RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
             KR+  V GW +++ +  +EV+ I  KG+QE+QKKCL +CC  NC   YKIGK    KI 
Sbjct: 1687 MKRRNEVNGWLNSLTALEREVNEILEKGDQEIQKKCLRNCCTRNCRFSYKIGKMAREKIP 1746

Query: 121  DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYG 180
             V EL  KG  F+   V   LP   VD   ME++VG + M  E+W  + D +  IIGLYG
Sbjct: 1747 AVSELKNKGH-FD--VVADILPSAPVDEKPMEKSVGLNLMFGEIWRWLEDEKVGIIGLYG 1803

Query: 181  IGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210
            +GGVGKTTL+KK+NN+FL     FD+VIWV
Sbjct: 1804 MGGVGKTTLMKKINNEFLKTKLGFDVVIWV 1833

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465083|ref|XP_002266249.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 137/210 (65%), Gaps = 2/210 (0%)

Query: 1   MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
           MDCV+P+LD+ TRLW CTA    YIR L +NL  L  A  EL  + EDV  RVE EE+ Q
Sbjct: 1   MDCVTPILDVATRLWTCTAKRIVYIRRLPRNLKILRTAMEELGSVYEDVIERVESEEKLQ 60

Query: 61  RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
           +KR + V+GW  +VE+  KE+  I  +G++EVQ KCLG+CC  + Y+ YK+GK+V  KIR
Sbjct: 61  KKRTRAVEGWIRSVEAMEKEIKEILEEGDEEVQNKCLGTCCPRDSYASYKLGKRVSRKIR 120

Query: 121 DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYG 180
            V  L  K   F   +V   LP P V     E+TVG DS   EVW  + D + R IG+YG
Sbjct: 121 AVAALRSKANHFH--EVAVPLPSPPVIERPSEKTVGLDSPFLEVWRWLQDEQVRTIGIYG 178

Query: 181 IGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210
           +GGVGKT LLKK+NNKFL  +H FD+VIWV
Sbjct: 179 MGGVGKTALLKKINNKFLQPSHDFDVVIWV 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494505|ref|XP_002266368.2| PREDICTED: probable disease resistance protein At5g63020 [Vitis vinifera]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/211 (48%), Positives = 134/211 (63%), Gaps = 3/211 (1%)

Query: 1   MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
           MD V P+ +I +RLWDCTA    YIR L +NLNS+  A  +L+++ EDV   V+ EE+ Q
Sbjct: 1   MDLVGPIFNIASRLWDCTAKRAVYIRELPENLNSIRTAMEDLKNVYEDVKENVDREEKLQ 60

Query: 61  RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
           +KR   V GW  +VE+  KEV+ +  KG++E+QKKCLG+CC  NC + YKIGK V  K+ 
Sbjct: 61  KKRTHAVDGWIQSVEAMQKEVNDLLAKGDEEIQKKCLGACCPKNCRASYKIGKMVREKMD 120

Query: 121 DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYG 180
           DV EL  K        V   LP P V    +++TVG DS+ D VW    D + R +GLYG
Sbjct: 121 DVAELQSKANFS---VVAEPLPSPPVIERPLDKTVGLDSLFDNVWMQHQDDKVRSVGLYG 177

Query: 181 IGGVGKTTLLKKLNNKFLDINHHFDLVIWVA 211
           +GGVGKTTLL ++NN+FL     FD VIWV 
Sbjct: 178 MGGVGKTTLLNRINNEFLKSRVGFDAVIWVT 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494493|ref|XP_002265648.2| PREDICTED: probable disease resistance protein At5g63020 [Vitis vinifera]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/213 (50%), Positives = 135/213 (63%), Gaps = 4/213 (1%)

Query: 1   MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
           MDCVSP+LD  TRLWDCTA    YIRHL +NLNSL     EL++L EDV  RVE EE++Q
Sbjct: 1   MDCVSPILDAATRLWDCTAKRAVYIRHLPQNLNSLRTEMEELKNLYEDVKERVEREEKRQ 60

Query: 61  RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
           +K  +VV GW   VE+  KEV  I  KG++E+QKKCLG+CC  NC + Y +GK V+ K+ 
Sbjct: 61  KKHLRVVDGWLRGVEAMEKEVQEILAKGDEEIQKKCLGTCCPKNCGASYNLGKMVLEKMD 120

Query: 121 DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIAD--YRCRIIGL 178
            V   +KK E      V   LP P V    +E+TVG D +  +VW  + D   +   IGL
Sbjct: 121 AVT--VKKTEGSNFSVVAEPLPSPPVMERQLEKTVGQDLLFGKVWKWLQDGGEQVSSIGL 178

Query: 179 YGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA 211
           YG+GGVGKTTLL ++NN+ L     FD VIWV 
Sbjct: 179 YGMGGVGKTTLLTRINNELLKTRLEFDAVIWVT 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743218|emb|CBI36085.3| unnamed protein product [Vitis vinifera]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/210 (49%), Positives = 140/210 (66%), Gaps = 3/210 (1%)

Query: 1   MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
           MDCVSP+LD++TR+WDCTA +  YIR L++N++SL  A +EL+++ EDV  RVE EEQ+Q
Sbjct: 1   MDCVSPILDVVTRVWDCTAKHAVYIRDLQENMDSLRNAMQELKNVHEDVKGRVELEEQRQ 60

Query: 61  RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
            +R   V GW   V +   +V+ I  KG+QE+QKKC G+CC  NC S YK+GKK   K+ 
Sbjct: 61  MRRTNEVDGWLHGVLAMEIQVNEILEKGDQEIQKKCPGTCCPRNCRSSYKLGKKATKKLG 120

Query: 121 DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYG 180
            V EL  KG  F+   V  +LP+  VD   ME+TVG D M   V  +I D    IIGLYG
Sbjct: 121 AVIELRNKGR-FD--VVADRLPQAPVDERPMEKTVGLDLMFTGVCRYIQDEELGIIGLYG 177

Query: 181 IGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210
           +GG GKTTL+ K+NN+F+  +  F++ IWV
Sbjct: 178 MGGAGKTTLMTKVNNEFIRSSKSFEIAIWV 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858210|emb|CAN79676.1| hypothetical protein VITISV_011750 [Vitis vinifera] gi|451799002|gb|AGF69199.1| disease resistance protein RPS5-like protein 3 [Vitis labrusca]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 107/213 (50%), Positives = 135/213 (63%), Gaps = 4/213 (1%)

Query: 1   MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
           MDCVSP+LD  TRLWDCTA    YIRHL +NLNSL     EL++L EDV  RVE EE++Q
Sbjct: 1   MDCVSPILDAATRLWDCTAKRAVYIRHLPQNLNSLRTEMEELKNLYEDVKERVEREEKRQ 60

Query: 61  RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
           +K  +VV GW   VE+  KEV  I  KG++E+QKKCLG+CC  NC + Y +GK V+ K+ 
Sbjct: 61  KKHLRVVDGWLRGVEAMEKEVQEILAKGDEEIQKKCLGTCCPKNCGASYNLGKMVLEKMD 120

Query: 121 DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIAD--YRCRIIGL 178
            V   +KK E      V   LP P V    +E+TVG D +  +VW  + D   +   IGL
Sbjct: 121 AVT--VKKTEGSNFSVVAEPLPSPPVMERQLEKTVGQDLLFGKVWKWLQDGGEQVSSIGL 178

Query: 179 YGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA 211
           YG+GGVGKTTLL ++NN+ L     FD VIWV 
Sbjct: 179 YGMGGVGKTTLLTRINNELLKTRLEFDAVIWVT 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442515|ref|XP_002278439.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/210 (49%), Positives = 140/210 (66%), Gaps = 3/210 (1%)

Query: 1   MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
           MDCVSP+LD++TR+WDCTA +  YIR L++N++SL  A +EL+++ EDV  RVE EEQ+Q
Sbjct: 1   MDCVSPILDVVTRVWDCTAKHAVYIRDLQENMDSLRNAMQELKNVHEDVKGRVELEEQRQ 60

Query: 61  RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
            +R   V GW   V +   +V+ I  KG+QE+QKKC G+CC  NC S YK+GKK   K+ 
Sbjct: 61  MRRTNEVDGWLHGVLAMEIQVNEILEKGDQEIQKKCPGTCCPRNCRSSYKLGKKATKKLG 120

Query: 121 DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYG 180
            V EL  KG  F+   V  +LP+  VD   ME+TVG D M   V  +I D    IIGLYG
Sbjct: 121 AVIELRNKGR-FD--VVADRLPQAPVDERPMEKTVGLDLMFTGVCRYIQDEELGIIGLYG 177

Query: 181 IGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210
           +GG GKTTL+ K+NN+F+  +  F++ IWV
Sbjct: 178 MGGAGKTTLMTKVNNEFIRSSKSFEIAIWV 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451799006|gb|AGF69201.1| disease resistance protein RPS5-like protein 5 [Vitis labrusca]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/213 (49%), Positives = 136/213 (63%), Gaps = 4/213 (1%)

Query: 1   MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
           MDCVSP+LD+ TRLWDCTA    YIRHL +NLNSL     EL++L EDV  RVE EE++Q
Sbjct: 1   MDCVSPILDVATRLWDCTAKRAVYIRHLPQNLNSLRTEMEELKNLYEDVKERVEREEKRQ 60

Query: 61  RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
           +KR +VV GW   VE+  KEV  I  KG++E+QKKCLG+CC  NC + YK+GK V+ K+ 
Sbjct: 61  KKRLRVVDGWLRGVEAMEKEVQEILAKGDEEIQKKCLGTCCPKNCGASYKLGKMVLEKMD 120

Query: 121 DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIAD--YRCRIIGL 178
            V    ++G  F    V   LP P V    +++TVG D +  +VW  + D   +   IGL
Sbjct: 121 AVTVKKREGSNFS--VVAEPLPIPPVIERQLDKTVGQDLLFGKVWKWLQDDGEKVSSIGL 178

Query: 179 YGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA 211
           YG+GGVGKTTLL + NN+       FD VIWV 
Sbjct: 179 YGMGGVGKTTLLTRTNNELHKTRVEFDAVIWVT 211

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082677|emb|CBI21682.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/213 (49%), Positives = 136/213 (63%), Gaps = 4/213 (1%)

Query: 1   MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
           MDCVSP+LD+ TRLWDCTA    YIRHL +NLNSL     EL++L EDV  RVE EE++Q
Sbjct: 1   MDCVSPILDVATRLWDCTAKRAVYIRHLPQNLNSLRTEMEELKNLYEDVKERVEREEKRQ 60

Query: 61  RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
           +KR +VV GW   VE+  KEV  I  KG++E+QKKCLG+CC  NC + YK+GK V+ K+ 
Sbjct: 61  KKRLRVVDGWLRGVEAMEKEVQEILAKGDEEIQKKCLGTCCPKNCGASYKLGKMVLEKMD 120

Query: 121 DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIAD--YRCRIIGL 178
            V    ++G  F    V   LP P V    +++TVG D +  +VW  + D   +   IGL
Sbjct: 121 AVTVKKREGSNFS--VVAEPLPIPPVIERQLDKTVGQDLLFGKVWKWLQDDGEKVSSIGL 178

Query: 179 YGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA 211
           YG+GGVGKTTLL + NN+       FD VIWV 
Sbjct: 179 YGMGGVGKTTLLTRTNNELHKTRVEFDAVIWVT 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494489|ref|XP_002265529.2| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/213 (49%), Positives = 136/213 (63%), Gaps = 4/213 (1%)

Query: 1   MDCVSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ 60
           MDCVSP+LD+ TRLWDCTA    YIRHL +NLNSL     EL++L EDV  RVE EE++Q
Sbjct: 1   MDCVSPILDVATRLWDCTAKRAVYIRHLPQNLNSLRTEMEELKNLYEDVKERVEREEKRQ 60

Query: 61  RKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIR 120
           +KR +VV GW   VE+  KEV  I  KG++E+QKKCLG+CC  NC + YK+GK V+ K+ 
Sbjct: 61  KKRLRVVDGWLRGVEAMEKEVQEILAKGDEEIQKKCLGTCCPKNCGASYKLGKMVLEKMD 120

Query: 121 DVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIAD--YRCRIIGL 178
            V    ++G  F    V   LP P V    +++TVG D +  +VW  + D   +   IGL
Sbjct: 121 AVTVKKREGSNFS--VVAEPLPIPPVIERQLDKTVGQDLLFGKVWKWLQDDGEKVSSIGL 178

Query: 179 YGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA 211
           YG+GGVGKTTLL + NN+       FD VIWV 
Sbjct: 179 YGMGGVGKTTLLTRTNNELHKTRVEFDAVIWVT 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.919	0.215	0.321	1.8e-19
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.933	0.225	0.268	2.1e-19
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.971	0.230	0.284	2.8e-19
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.900	0.223	0.302	9e-19
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.933	0.232	0.268	3.1e-18
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.909	0.198	0.320	1.6e-17
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.905	0.215	0.308	3e-17
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.957	0.227	0.289	2.2e-16
TAIR|locus:2170902	862	AT5G43740 [Arabidopsis thalian	0.957	0.234	0.259	2.7e-16
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.957	0.228	0.293	3.2e-15

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 65/202 (32%), Positives = 98/202 (48%)

Query:    11 LTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSXXXXXXXXXXXXXXXXXXGW 70
             L R+++C     SYIR L+KNL +L     +L  +  +V                    W
Sbjct:    14 LNRIFNCLIGK-SYIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQRRLEAVQVW 72

Query:    71 FDAVES-QIKEVDVISRKGEQEVQKKCL-GSCCIYNCYSGYKIGKKVINKIRDVKELIKK 128
              D V S  I+  D++S     E+QK CL G C  Y C S YK GKKV   + +VK+L  +
Sbjct:    73 LDRVNSVDIECKDLLSVT-PVELQKLCLCGLCSKYVC-SSYKYGKKVFLLLEEVKKLNSE 130

Query:   129 GEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGXXX 188
             G  F+  +V+   PR  V+    + T+G + ML++ W  + +    I+GL+G+GGVG   
Sbjct:   131 GN-FD--EVSQPPPRSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMGGVGKTT 187

Query:   189 XXXXXXXXXXDINHHFDLVIWV 210
                       +I   FD+VIW+
Sbjct:   188 LFKKIHNKFAEIGGTFDIVIWI 209

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 54/201 (26%), Positives = 96/201 (47%)

Query:    11 LTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSXXXXXXXXXXXXXXXXXXGW 70
             +  L  C + N +  R+L  ++ +L +  R+LE   +D+                    W
Sbjct:    15 VNNLTSCLSRNQNRFRNLVDHVAALKKTVRQLEARRDDLLKRIKVQEDRGLNLLDEVQQW 74

Query:    71 FDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGE 130
                VES++ E   I  + ++E+   C G  C   C   Y   K VINK++DV+ L+ KG 
Sbjct:    75 LSEVESRVCEAHDILSQSDEEIDNLCCGQYCSKRCKYSYDYSKSVINKLQDVENLLSKG- 133

Query:   131 IFENLQVTYKLPRPTVDGMVM-EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGXXXX 189
             +F+  +V  K P P V+  +  +E VG +++++  W  + +    ++G+YG+GGVG    
Sbjct:   134 VFD--EVAQKGPIPKVEERLFHQEIVGQEAIVESTWNSMMEVGVGLLGIYGMGGVGKTTL 191

Query:   190 XXXXXXXXXDINHHFDLVIWV 210
                       +++ FD+ IWV
Sbjct:   192 LSQINNKFRTVSNDFDIAIWV 212

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 60/211 (28%), Positives = 94/211 (44%)

Query:     3 CVSPVL--DILTR-LWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSXXXXXXXXX 59
             CVS  +  D LT+ +  C   NG YI  L++NL +L  A  ++E   ED+          
Sbjct:     4 CVSVSISCDQLTKNVCSCLNRNGDYIHGLEENLTALQRALEQIEQRREDLLRKILSEERR 63

Query:    60 XXXXXXXXXGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKI 119
                      GW   VE+ +  V+ + R    +VQ+ CL   C  N  S Y+ GK+V+  I
Sbjct:    64 GLQRLSVVQGWVSKVEAIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMI 123

Query:   120 RDVKELIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLY 179
              +V+ L  +G+      V  ++    V+       V  D ML+  W  + +    I+GL+
Sbjct:   124 EEVEVLRYQGDF---AVVAERVDAARVEERPTRPMVAMDPMLESAWNRLMEDEIGILGLH 180

Query:   180 GIGGVGXXXXXXXXXXXXXDINHHFDLVIWV 210
             G+GGVG              +   FD+VIW+
Sbjct:   181 GMGGVGKTTLLSHINNRFSRVGGEFDIVIWI 211

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 9.0e-19, P = 9.0e-19
 Identities = 59/195 (30%), Positives = 91/195 (46%)

Query:    17 CTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSXXXXXXXXXXXXXXXXXXGWFDAVES 76
             C   + +YI  ++ NL +L    +ELE+  +D+                   GW   V+ 
Sbjct:    21 CLFGDRNYILKMEANLEALQNTMQELEERRDDLLRRVVIEEDKGLQRLAQVQGWLSRVKD 80

Query:    77 QIKEV-DVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENL 135
                +V D++  K  Q  ++ CL   C  N  SG   G  V+ K++ V+ L+ KG +FE  
Sbjct:    81 VCSQVNDLLKAKSIQ-TERLCLCGYCSKNFISGRNYGINVLKKLKHVEGLLAKG-VFE-- 136

Query:   136 QVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGXXXXXXXXXX 195
              V  K+P P V+   ++ TVG D+M+   W  +     R +GLYG+GGVG          
Sbjct:   137 VVAEKIPAPKVEKKHIQTTVGLDAMVGRAWNSLMKDERRTLGLYGMGGVGKTTLLASINN 196

Query:   196 XXXDINHHFDLVIWV 210
                +  + FDLVIWV
Sbjct:   197 KFLEGMNGFDLVIWV 211

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 3.1e-18, P = 3.1e-18
 Identities = 54/201 (26%), Positives = 89/201 (44%)

Query:    10 ILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSXXXXXXXXXXXXXXXXXXG 69
             I T    C  ++ +YI  ++ NL++L +   EL++  +D+                   G
Sbjct:    13 IFTAACGCFLSDSNYIHLMESNLDALQKTMEELKNGRDDLLARVSIEEDKGLQRLALVNG 72

Query:    70 WFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKG 129
             W   V+    E   +      E  + CL   C  +C S Y  G KV+  + +VKEL+ K 
Sbjct:    73 WLSRVQIVESEFKDLLEAMSIETGRLCLFGYCSEDCISSYNYGGKVMKNLEEVKELLSK- 131

Query:   130 EIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGXXXX 189
                +N +V  +   P  +   ++ TVG D+M+   W  + D   R +GLYG+GG+G    
Sbjct:   132 ---KNFEVVAQKIIPKAEKKHIQTTVGLDTMVGIAWESLIDDEIRTLGLYGMGGIGKTTL 188

Query:   190 XXXXXXXXXDINHHFDLVIWV 210
                      ++   FD+VIWV
Sbjct:   189 LESLNNKFVELESEFDVVIWV 209

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 66/206 (32%), Positives = 99/206 (48%)

Query:    10 ILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDL---SEDVSXXXXXXXXXXXXXXXX 66
             +L R+  C    G YIR+L+KNL +L   +RE+EDL     +V                 
Sbjct:    14 MLDRIIRCLCGKG-YIRNLEKNLRAL---QREMEDLRATQHEVQNKVAREESRHQQRLEA 69

Query:    67 XXGWFDAVES-QIKEVDVISRKGEQEVQKKCL-GSCCIYNCYSGYKIGKKVINKIRDVKE 124
                W D V S  I+  D++S     E+QK CL G C  Y C S YK GK+V   + +V +
Sbjct:    70 VQVWLDRVNSIDIECKDLLS-VSPVELQKLCLCGLCSKYVC-SSYKYGKRVFLLLEEVTK 127

Query:   125 LIKKGEIFENLQVTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGV 184
             L  +G  F+  +V+   PR  V+    + T+G + ML + W  + +    I+GL+G+GGV
Sbjct:   128 LKSEGN-FD--EVSQPPPRSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGV 184

Query:   185 GXXXXXXXXXXXXXDINHHFDLVIWV 210
             G             +    FD+VIW+
Sbjct:   185 GKTTLFKKIHNKFAETGGTFDIVIWI 210

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 61/198 (30%), Positives = 94/198 (47%)

Query:    15 WDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSXXXXXXXXXXXXXXXXXXG-WFDA 73
             W C +  GSYI++L +NL SL +A   L    +DV                     W   
Sbjct:    21 WLCVS--GSYIQNLSENLASLQKAMGVLNAKRDDVQGRINREEFTGHRRRLAQVQVWLTR 78

Query:    74 VESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFE 133
             +++   + + +      E+Q+ CL   C  N    Y  GK+VI  +R+V+ L  +G +F+
Sbjct:    79 IQTIENQFNDLLSTCNAEIQRLCLCGFCSKNVKMSYLYGKRVIVLLREVEGLSSQG-VFD 137

Query:   134 NLQVTYKLPRPTVDGMVMEET-VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGXXXXXXX 192
                VT   P   V+ + ++ T VG DSMLD+VW  + + +  I+GLYG+GGVG       
Sbjct:   138 I--VTEAAPIAEVEELPIQSTIVGQDSMLDKVWNCLMEDKVWIVGLYGMGGVGKTTLLTQ 195

Query:   193 XXXXXXDINHHFDLVIWV 210
                    +   FD+VIWV
Sbjct:   196 INNKFSKLGGGFDVVIWV 213

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 60/207 (28%), Positives = 94/207 (45%)

Query:     6 PVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSXXXXXXXXXXXXXXX 65
             P   ++++        GSYI +L KNL SL +A R L+    DV                
Sbjct:    10 PCDQVVSQFSQLLCVRGSYIHNLSKNLASLQKAMRMLKARQYDVIRRLETEEFTGRQQRL 69

Query:    66 XXXG-WFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKE 124
                  W  +V     + + + R  E E+Q+ CL   C  +    Y+ GK+VI  +++V+ 
Sbjct:    70 SQVQVWLTSVLIIQNQFNDLLRSNEVELQRLCLCGFCSKDLKLSYRYGKRVIMMLKEVES 129

Query:   125 LIKKGEIFENLQVTYKLPRPTVDGMVMEET-VGFDSMLDEVWGHIADYRCRIIGLYGIGG 183
             L  +G  F+   V+   P   VD +  + T VG + ML++ W  + +    I+GLYG+GG
Sbjct:   130 LSSQG-FFD--VVSEATPFADVDEIPFQPTIVGQEIMLEKAWNRLMEDGSGILGLYGMGG 186

Query:   184 VGXXXXXXXXXXXXXDINHHFDLVIWV 210
             VG              I+  FD+VIWV
Sbjct:   187 VGKTTLLTKINNKFSKIDDRFDVVIWV 213

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2170902 AT5G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 54/208 (25%), Positives = 91/208 (43%)

Query:     4 VSPVLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSXXXXXXXXXXXXX 63
             V P   I T    C  ++ +YI  ++ NL++L +   EL++  +D+              
Sbjct:     6 VIPWNQIFTAACGCFLSDRNYIHMMESNLDALQKTMEELKNGRDDLLGRVSIEEDKGLQR 65

Query:    64 XXXXXGWFDAVESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVK 123
                  GW   V+    E   +      E  + CL   C  +C S Y  G+KV   + +VK
Sbjct:    66 LAQVNGWLSRVQIVESEFKDLLEAMSIETGRLCLLGYCSEDCISSYNYGEKVSKMLEEVK 125

Query:   124 ELIKKGEIFENLQ-VTYKLPRPTVDGMVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIG 182
             EL+ K +     Q + +K     V+  +++ TVG D +++  W  + +     +GLYG+G
Sbjct:   126 ELLSKKDFRMVAQEIIHK-----VEKKLIQTTVGLDKLVEMAWSSLMNDEIGTLGLYGMG 180

Query:   183 GVGXXXXXXXXXXXXXDINHHFDLVIWV 210
             GVG             ++   FD+VIWV
Sbjct:   181 GVGKTTLLESLNNKFVELESEFDVVIWV 208

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 63/215 (29%), Positives = 99/215 (46%)

Query:     3 CVSPVLD---ILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSXXXXXXXXX 59
             CVS  +    +L  L  C      YI+++K+NL SL EA  +L+ L +D+          
Sbjct:     4 CVSVQVSCDQLLNHLGRCFCRKLYYIQNIKENLTSLEEAMEDLKALRDDLLRKVQTAEEG 63

Query:    60 XXXXXXXXXGWFDAV---ESQIKEVDVISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVI 116
                       W   V   ESQ  ++D  SR    E+Q+ C       N    Y  G++V 
Sbjct:    64 GLQRLHQIKVWLKRVKTIESQFNDLDS-SRT--VELQRLCCCGVGSRNLRLSYDYGRRVF 120

Query:   117 NKIRDVKELIKKGEIFENLQVTYKLPRPTVDGMVMEET-VGFDSMLDEVWGHIADYRCRI 175
               +  V++L  KG IFE  +V +   R   +   ++ T VG +++L++ W H+ D   +I
Sbjct:   121 LMLNIVEDLKSKG-IFE--EVAHPATRAVGEERPLQPTIVGQETILEKAWDHLMDDGTKI 177

Query:   176 IGLYGIGGVGXXXXXXXXXXXXXDINHHFDLVIWV 210
             +GLYG+GGVG             D +   ++VIWV
Sbjct:   178 MGLYGMGGVGKTTLLTQINNRFCDTDDGVEIVIWV 212

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-09

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 157 FDSMLDEVWGHI--ADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV 210
            + M++ +   +        ++G+ G+GGVGKTTL K++ N    +  HFD V WV
Sbjct: 1   REDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDD-SVGGHFDSVAWV 55

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.18
PRK09376	416	rho transcription termination factor Rho; Provisio	98.32
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	98.12
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.09
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	98.08
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.05
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.97
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.91
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.88
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.87
TIGR00767	415	rho transcription termination factor Rho. Members	97.86
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.83
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.8
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.8
PRK13342	413	recombination factor protein RarA; Reviewed	97.75
PTZ00202	550	tuzin; Provisional	97.74
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.66
COG0488	530	Uup ATPase components of ABC transporters with dup	97.65
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.65
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.65
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.6
PRK12402	337	replication factor C small subunit 2; Reviewed	97.57
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.55
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.54
PF12061	402	DUF3542: Protein of unknown function (DUF3542); In	97.53
PRK04195	482	replication factor C large subunit; Provisional	97.52
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.51
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.49
PRK15455	644	PrkA family serine protein kinase; Provisional	97.49
PRK06696	223	uridine kinase; Validated	97.48
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.46
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.43
PLN03025	319	replication factor C subunit; Provisional	97.43
PRK13341	725	recombination factor protein RarA/unknown domain f	97.41
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.39
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.39
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.34
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.33
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.33
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.32
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.32
PHA02544	316	44 clamp loader, small subunit; Provisional	97.31
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.31
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.3
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.3
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.28
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.27
CHL00095	821	clpC Clp protease ATP binding subunit	97.26
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.25
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.24
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.24
KOG2028	554	consensus ATPase related to the helicase subunit o	97.24
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.24
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.23
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.23
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.23
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.23
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.22
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	97.21
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.21
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.21
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.21
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.2
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.2
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.2
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.2
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.2
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.2
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.19
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.19
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.19
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.19
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.18
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.18
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.17
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.17
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.16
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.16
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.16
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.15
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.15
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.15
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	97.15
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.15
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.14
PRK03846	198	adenylylsulfate kinase; Provisional	97.14
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.14
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.14
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.14
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.13
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.13
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.13
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.13
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.12
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.11
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.11
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.11
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.1
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.1
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.09
PRK08727	233	hypothetical protein; Validated	97.09
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.09
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.09
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.09
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.09
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.08
PRK10908	222	cell division protein FtsE; Provisional	97.08
PRK08084	235	DNA replication initiation factor; Provisional	97.08
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.07
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.07
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.07
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.06
KOG0927	614	consensus Predicted transporter (ABC superfamily)	97.06
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.06
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.05
cd03246	173	ABCC_Protease_Secretion This family represents the	97.05
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.05
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	97.04
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.04
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.03
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.03
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.03
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.03
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	97.03
PRK10865	857	protein disaggregation chaperone; Provisional	97.02
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.02
PRK10536	262	hypothetical protein; Provisional	97.02
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.02
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.02
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.01
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	97.01
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.01
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.01
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.01
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.01
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	97.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	97.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	97.0
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.99
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.99
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.99
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.99
COG4559	259	ABC-type hemin transport system, ATPase component	96.99
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.99
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.99
PLN02796	347	D-glycerate 3-kinase	96.99
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.98
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	96.98
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	96.98
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.98
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.97
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	96.97
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	96.97
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.97
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	96.97
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.96
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	96.96
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	96.96
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.96
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	96.96
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	96.96
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.95
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.95
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.95
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.95
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.95
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	96.95
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.95
PRK13531	498	regulatory ATPase RavA; Provisional	96.95
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	96.95
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	96.94
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.94
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	96.94
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.93
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.93
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	96.93
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.93
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.93
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	96.93
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.93
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.93
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.93
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	96.92
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.91
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	96.91
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	96.91
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	96.91
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.91
PRK06893	229	DNA replication initiation factor; Validated	96.91
PRK05439	311	pantothenate kinase; Provisional	96.91
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.9
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.9
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	96.9
PLN02165	334	adenylate isopentenyltransferase	96.9
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	96.9
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	96.9
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	96.9
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	96.9
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.9
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	96.9
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	96.89
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.89
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	96.89
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	96.89
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	96.88
PRK10416	318	signal recognition particle-docking protein FtsY;	96.88
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.88
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	96.88
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.88
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.87
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	96.87
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.87
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	96.87
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	96.87
PRK05564	313	DNA polymerase III subunit delta'; Validated	96.87
PRK13546	264	teichoic acids export protein ATP-binding subunit;	96.87
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	96.86
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.86
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	96.86
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	96.86
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.86
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.86
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	96.86
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.86
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	96.85
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	96.85
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	96.85
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	96.85
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	96.85
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	96.84
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	96.84
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.84
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.84
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.84
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	96.83
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	96.83
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.83
PLN02318	656	phosphoribulokinase/uridine kinase	96.82
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	96.82
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	96.82
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	96.82
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	96.82
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.82
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	96.82
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	96.82
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.81
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	96.81
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	96.81
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	96.81
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	96.81
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.8
PRK03695	248	vitamin B12-transporter ATPase; Provisional	96.8
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.8
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	96.8
PLN02348	395	phosphoribulokinase	96.8
CHL00181	287	cbbX CbbX; Provisional	96.8
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	96.8
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.8
PRK13537	306	nodulation ABC transporter NodI; Provisional	96.8
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.8
PRK09984	262	phosphonate/organophosphate ester transporter subu	96.8
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	96.8
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.79
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.79
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	96.79
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	96.78
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	96.78
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	96.78
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	96.78
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.78
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	96.78
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	96.77
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	96.77
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.77
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	96.77
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	96.76
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	96.76
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	96.75
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.75
PRK13536	340	nodulation factor exporter subunit NodI; Provision	96.74
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	96.74
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	96.74
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.74
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.73
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.73
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	96.73
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.73
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.73
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	96.73
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	96.72
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	96.72
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	96.71
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.71
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.71
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	96.7
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.7
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	96.7
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.7
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	96.7
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	96.69
PRK09087	226	hypothetical protein; Validated	96.69
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	96.69
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	96.68
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.68
PLN02200	234	adenylate kinase family protein	96.68
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.67
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.67
PRK13409	590	putative ATPase RIL; Provisional	96.67
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.67
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.66
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	96.66
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	96.66
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	96.66
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	96.66
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	96.66
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	96.66
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	96.66
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	96.65
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	96.65
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	96.65
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	96.64
PRK15064	530	ABC transporter ATP-binding protein; Provisional	96.64
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.64
PRK10938	490	putative molybdenum transport ATP-binding protein	96.63
PRK06620	214	hypothetical protein; Validated	96.63
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.63
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	96.63
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	96.63
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	96.63
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	96.63
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	96.63
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.62
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	96.62
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.61
PLN03046	460	D-glycerate 3-kinase; Provisional	96.61
COG4136	213	ABC-type uncharacterized transport system, ATPase	96.61
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	96.6
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	96.6
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	96.6
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	96.6
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	96.6
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	96.6
PTZ00112	1164	origin recognition complex 1 protein; Provisional	96.6
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	96.6
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.58
cd03299	235	ABC_ModC_like Archeal protein closely related to M	96.58
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.58
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	96.57
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	96.57
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	96.57
PRK15064	530	ABC transporter ATP-binding protein; Provisional	96.57
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	96.56
COG1127	263	Ttg2A ABC-type transport system involved in resist	96.56
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	96.56
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	96.55
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	96.55
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.55
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.55
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.55
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.54
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.54
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	96.54
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	96.54
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	96.54
PRK10261	623	glutathione transporter ATP-binding protein; Provi	96.53
PRK11147	635	ABC transporter ATPase component; Reviewed	96.53
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.53
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	96.53
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.53
PRK13409	590	putative ATPase RIL; Provisional	96.53
PRK11147	635	ABC transporter ATPase component; Reviewed	96.52
PRK14974	336	cell division protein FtsY; Provisional	96.52
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	96.52
PRK06851	367	hypothetical protein; Provisional	96.51
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	96.51
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	96.51
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.51
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.5
PRK10938	490	putative molybdenum transport ATP-binding protein	96.49
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	96.49
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.49
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	96.49
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	96.49
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.49
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	96.49
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.48
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	96.48
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.48
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	96.48
PRK12377	248	putative replication protein; Provisional	96.48
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.47
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	96.47
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.47
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	96.47
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	96.46
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	96.46
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	96.46
PLN03073	718	ABC transporter F family; Provisional	96.45
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	96.45
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	96.45
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.45
PRK09183	259	transposase/IS protein; Provisional	96.44
PRK09112	351	DNA polymerase III subunit delta'; Validated	96.44
PRK10261	623	glutathione transporter ATP-binding protein; Provi	96.44
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.44
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	96.43
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.43
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.43
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	96.42
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.42
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	96.42
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	96.4
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	96.4
PRK00098	298	GTPase RsgA; Reviewed	96.39
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	96.39
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.38
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	96.38
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.38
COG4133	209	CcmA ABC-type transport system involved in cytochr	96.38
COG1123	539	ATPase components of various ABC-type transport sy	96.38
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	96.37
PLN03073	718	ABC transporter F family; Provisional	96.36
PRK05642	234	DNA replication initiation factor; Validated	96.36
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.35
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.35
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.35
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	96.33
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	96.32
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.32
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.32
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	96.32
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.31
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.3
PRK07940	394	DNA polymerase III subunit delta'; Validated	96.29
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.29
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.28
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.28
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	96.27
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	96.26
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.25
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.25
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	96.25
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	96.24
PRK04220	301	2-phosphoglycerate kinase; Provisional	96.22
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	96.22
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.2
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	96.18
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.18
PF13245	76	AAA_19: Part of AAA domain	96.17
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.15
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.14
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.13
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.13
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	96.13
PRK08116	268	hypothetical protein; Validated	96.12
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.11
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.11
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	96.11
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	96.11
KOG0781	587	consensus Signal recognition particle receptor, al	96.1
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	96.1
COG4240	300	Predicted kinase [General function prediction only	96.09
KOG0062	582	consensus ATPase component of ABC transporters wit	96.09
PRK07471	365	DNA polymerase III subunit delta'; Validated	96.08
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	96.06
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.05
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.05
PRK07952	244	DNA replication protein DnaC; Validated	96.05
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.04
PRK06526	254	transposase; Provisional	96.04
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	96.03
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	96.03
PRK13765	637	ATP-dependent protease Lon; Provisional	96.02
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.02
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	96.0
PRK10865	857	protein disaggregation chaperone; Provisional	95.99
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	95.99
PRK10522	547	multidrug transporter membrane component/ATP-bindi	95.98
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	95.97
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	95.97
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	95.96
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	95.96
COG4598	256	HisP ABC-type histidine transport system, ATPase c	95.96
PRK06835	329	DNA replication protein DnaC; Validated	95.95
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	95.95
PRK00771	437	signal recognition particle protein Srp54; Provisi	95.94
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	95.93
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	95.93
COG0411	250	LivG ABC-type branched-chain amino acid transport	95.93
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	95.92
PRK12289	352	GTPase RsgA; Reviewed	95.92
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	95.92

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.90  E-value=8.1e-23  Score=184.25  Aligned_cols=190  Identities=31%  Similarity=0.503  Sum_probs=144.7

Q ss_pred             hHhHHHHHhhhccchhhchhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHHHHHHHHHhHhhH
Q 041747           10 ILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISRKGE   89 (211)
Q Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~v~~~~~~~ed~ld~~~   89 (211)
                      .++++++++.++...+.+.++++..|++++..|+.++.|+++.       +.. ......|.+.++++.|++||+++.+.
T Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-------~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~   79 (889)
T KOG4658|consen    8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-------RDD-LERRVNWEEDVGDLVYLAEDIIWLFL   79 (889)
T ss_pred             ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-------cch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888899999999999999999999999999999995433       333 47788999999999999999999986


Q ss_pred             HHHhc----------------hhcCCcccCCccchhhhHHHHHHHHHHHHHHHHcccccccccccc-cCCCCcccCCccc
Q 041747           90 QEVQK----------------KCLGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENLQVTY-KLPRPTVDGMVME  152 (211)
Q Consensus        90 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  152 (211)
                      .+...                -|....|..+...-+.+++++..+.+.++.+..+.. |.  .+.. ..|+......+..
T Consensus        80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~--~~~~~~~~~~~~e~~~~~  156 (889)
T KOG4658|consen   80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FE--VVGESLDPREKVETRPIQ  156 (889)
T ss_pred             HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-ee--cccccccchhhcccCCCC
Confidence            54321                233345555555666777878777777777665543 33  2221 1122222222211


Q ss_pred             c-c-cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhh-cCCCccEEEEeC
Q 041747          153 E-T-VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLD-INHHFDLVIWVA  211 (211)
Q Consensus       153 ~-~-~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~-v~~~F~~~~wv~  211 (211)
                      . . ||.+..++++++.|.+++..++||+||||+||||||+.|||+. . ++.+||.+|||+
T Consensus       157 ~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~-~~v~~~Fd~~iWV~  217 (889)
T KOG4658|consen  157 SESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKF-DEVGNHFDGVIWVV  217 (889)
T ss_pred             ccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhccc-chhcccCceEEEEE
Confidence            1 2 9999999999999999888999999999999999999999998 6 999999999995

>PLN03210 Resistant to P

Probab=99.18  E-value=9.9e-11  Score=110.34  Aligned_cols=56  Identities=23%  Similarity=0.589  Sum_probs=49.3

Q ss_pred             ccccchHHHHHHHHHhhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747          152 EETVGFDSMLDEVWGHIA--DYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV  210 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv  210 (211)
                      +.++|++..++++..+|.  .+++++|+||||||+||||||+.+|+..   ..+|+..+|+
T Consensus       184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv  241 (1153)
T PLN03210        184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFI  241 (1153)
T ss_pred             ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEe
Confidence            558999999999998874  3679999999999999999999999965   6789988876

syringae 6; Provisional

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.32  E-value=5.8e-07  Score=74.55  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=34.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEeC
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA  211 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv~  211 (211)
                      ......+|+|++|+|||||++.||+.. ... +|++++||+
T Consensus       167 GkGQR~lIvgppGvGKTTLaK~Ian~I-~~n-hFDv~~~Vv  205 (416)
T PRK09376        167 GKGQRGLIVAPPKAGKTVLLQNIANSI-TTN-HPEVHLIVL  205 (416)
T ss_pred             ccCceEEEeCCCCCChhHHHHHHHHHH-Hhh-cCCeEEEEE
Confidence            467789999999999999999999987 433 899999984

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=8.4e-05  Score=65.61  Aligned_cols=47  Identities=26%  Similarity=0.449  Sum_probs=41.0

Q ss_pred             cccccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.+|+++-++.+++++--      -+.+++..+|++|+|||++++.|....
T Consensus       410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL  462 (906)
T KOG2004|consen  410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL  462 (906)
T ss_pred             cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence            45688999999999998742      478999999999999999999998865

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.09  E-value=6.8e-06  Score=58.54  Aligned_cols=42  Identities=26%  Similarity=0.402  Sum_probs=36.5

Q ss_pred             chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      |++..+..+...+..+....+-|+|+.|+|||||++.+++..
T Consensus         2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009           2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            667788888888876667889999999999999999999875

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.00022  Score=63.07  Aligned_cols=51  Identities=25%  Similarity=0.428  Sum_probs=42.4

Q ss_pred             cccccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCc
Q 041747          151 MEETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHF  204 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F  204 (211)
                      ..+++|.+..++.|++.|--      -+..++..||++|+|||+|++.|-...   ..+|
T Consensus       322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf  378 (782)
T COG0466         322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF  378 (782)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE
Confidence            34578999999999998842      356799999999999999999998865   5555

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.05  E-value=1.9e-05  Score=66.96  Aligned_cols=57  Identities=19%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEeC
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA  211 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv~  211 (211)
                      .++++.+...+.+...|.  ..+.|-++|++|+||||||+.+.+.. .....|+.+.||+
T Consensus       175 ~d~~i~e~~le~l~~~L~--~~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~Vt  231 (459)
T PRK11331        175 NDLFIPETTIETILKRLT--IKKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQ  231 (459)
T ss_pred             hcccCCHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEe
Confidence            346778889999999987  56678889999999999999998876 4445677777764

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.97  E-value=2e-05  Score=60.77  Aligned_cols=47  Identities=26%  Similarity=0.375  Sum_probs=33.6

Q ss_pred             cccccchHHHHHHHHHhhc-----cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIA-----DYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++++|.+.-++.+.-++.     .+.+.-+=.||++|+||||||+.|-++.
T Consensus        23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~   74 (233)
T PF05496_consen   23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL   74 (233)
T ss_dssp             CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred             HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence            4568898887777655543     2457788899999999999999999876

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.91  E-value=3.1e-05  Score=65.23  Aligned_cols=46  Identities=26%  Similarity=0.284  Sum_probs=39.2

Q ss_pred             ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.++||+++.++|...|.+    .....+-|+|++|+||||+++.++++.
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999853    344567899999999999999999876

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.88  E-value=2.2e-05  Score=64.78  Aligned_cols=45  Identities=22%  Similarity=0.358  Sum_probs=39.9

Q ss_pred             cccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++|.++.+++++.++..      ...+++.++|+.|+||||||+.+.+..
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l  102 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999864      346899999999999999999998765

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.87  E-value=2.1e-05  Score=63.95  Aligned_cols=46  Identities=28%  Similarity=0.381  Sum_probs=38.8

Q ss_pred             ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..++.|..++..     .....+-++|++|+||||||+.+.+..
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~   54 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM   54 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999888862     345668899999999999999998865

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR00767 rho transcription termination factor Rho

Probab=97.86  E-value=1.9e-05  Score=65.95  Aligned_cols=39  Identities=21%  Similarity=0.192  Sum_probs=33.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEeC
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWVA  211 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv~  211 (211)
                      .....++|+|++|+|||||++.|++.. . +.+|+.++||+
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~Vl  204 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVL  204 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEE
Confidence            467899999999999999999999986 4 33799999974

Members of this family differ in the specificity of RNA binding.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.83  E-value=3.1e-05  Score=64.56  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.++|++.+.+.|..+|.+    .....+-|+|++|+|||++++.+++..
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999864    345678999999999999999999864

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR00763 lon ATP-dependent protease La

Probab=97.80  E-value=0.00046  Score=63.21  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=36.7

Q ss_pred             cccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++|.+..++.+..++..      .+..++.++|++|+||||||+.|.+..
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l  371 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL  371 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            477988888888886642      244589999999999999999998865

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.80  E-value=0.00044  Score=63.19  Aligned_cols=46  Identities=26%  Similarity=0.389  Sum_probs=38.9

Q ss_pred             ccccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.++.+|..      ....++.++|++|+|||||++.+....
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l  373 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT  373 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999988752      356789999999999999999998754

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.75  E-value=4.3e-05  Score=64.93  Aligned_cols=46  Identities=30%  Similarity=0.400  Sum_probs=36.8

Q ss_pred             ccccchHHHHHH---HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDE---VWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|.+..+..   +..++.......+-++|++|+||||||+.+.+..
T Consensus        12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~   60 (413)
T PRK13342         12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT   60 (413)
T ss_pred             HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            457787766555   7777766677788899999999999999998865

>PTZ00202 tuzin; Provisional

Probab=97.74  E-value=6.4e-05  Score=63.48  Aligned_cols=48  Identities=23%  Similarity=0.236  Sum_probs=40.1

Q ss_pred             ccccccchHHHHHHHHHhhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          150 VMEETVGFDSMLDEVWGHIAD---YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.+.++||+.+...|...|.+   ...+++.|.|++|+|||||++.+....
T Consensus       260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l  310 (550)
T PTZ00202        260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE  310 (550)
T ss_pred             CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence            346789999999999988854   235699999999999999999998754

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.66  E-value=0.0024  Score=57.06  Aligned_cols=46  Identities=30%  Similarity=0.335  Sum_probs=39.3

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|....+..+...+.......+.|+|++|+||||||+.+++..
T Consensus       154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~  199 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA  199 (615)
T ss_pred             HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            4578988888888888766667789999999999999999998765

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.65  E-value=0.0002  Score=62.39  Aligned_cols=27  Identities=41%  Similarity=0.553  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....|+|+|++|+|||||.+.|.+..
T Consensus       346 ~~g~riaiiG~NG~GKSTLlk~l~g~~  372 (530)
T COG0488         346 DRGDRIAIVGPNGAGKSTLLKLLAGEL  372 (530)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence            577899999999999999999997653

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.65  E-value=0.00012  Score=56.86  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=34.9

Q ss_pred             chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.+..++.+..++.......+-++|+.|+||||||+.+++..
T Consensus        21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA   62 (226)
T ss_pred             CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345677778777665677889999999999999999999875

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.65  E-value=7.5e-05  Score=61.51  Aligned_cols=46  Identities=28%  Similarity=0.392  Sum_probs=38.3

Q ss_pred             ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..++.+..++..     .....+-++|++|+||||||+.+.+..
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l   75 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM   75 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence            5689999999888877752     345678899999999999999998875

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.60  E-value=0.00011  Score=57.49  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+|+|.|++|+|||||++.+.+..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            568899999999999999999998765

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.57  E-value=0.00013  Score=60.06  Aligned_cols=46  Identities=20%  Similarity=0.328  Sum_probs=39.1

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|..++..+....+-++|+.|+||||||+.+.+..
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l   60 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL   60 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            5578999999999998876665677899999999999999987754

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.55  E-value=0.00017  Score=57.43  Aligned_cols=27  Identities=37%  Similarity=0.487  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..++.|+|++|+|||||++.+++..
T Consensus        41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l   67 (269)
T TIGR03015        41 QREGFILITGEVGAGKTTLIRNLLKRL   67 (269)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence            456689999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.54  E-value=0.00016  Score=57.44  Aligned_cols=47  Identities=26%  Similarity=0.394  Sum_probs=39.8

Q ss_pred             cccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++|.+..+++|-=++..     ..+.-+-++|++|.||||||..|-++.
T Consensus        25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em   76 (332)
T COG2255          25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL   76 (332)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence            35689998888888776653     578999999999999999999999876

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide

Probab=97.53  E-value=0.00018  Score=57.62  Aligned_cols=103  Identities=15%  Similarity=0.166  Sum_probs=77.0

Q ss_pred             hHhhHhHHHHHhhhccchhhchhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHHHHHHHHHhH
Q 041747            7 VLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISR   86 (211)
Q Consensus         7 v~~~~~~l~~~~~~~~~~~~~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~v~~~~~~~ed~ld   86 (211)
                      |.-++++|-++..+....+.-++++++-++.+++.|+.|++.+      +++...+. ...+.+..++.+.||++|-++|
T Consensus       298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVVD  370 (402)
T PF12061_consen  298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVVD  370 (402)
T ss_pred             HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeeee
Confidence            3347888999999999999999999999999999999999886      44444444 3499999999999999999999


Q ss_pred             hhHHHH-hchhcCCcccCCccchhhhHHHHHHHHHHHH
Q 041747           87 KGEQEV-QKKCLGSCCIYNCYSGYKIGKKVINKIRDVK  123 (211)
Q Consensus        87 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~  123 (211)
                      .+.... ..||+..|.       +.+..++.-+.++++
T Consensus       371 aCi~k~~P~Wcl~~WL-------~dIieei~~ik~~i~  401 (402)
T PF12061_consen  371 ACISKSVPHWCLERWL-------LDIIEEITCIKAKIQ  401 (402)
T ss_pred             hhhcCCCcHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence            864322 224543222       456666666665554

The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.

>PRK04195 replication factor C large subunit; Provisional

Probab=97.52  E-value=0.0001  Score=63.82  Aligned_cols=47  Identities=30%  Similarity=0.532  Sum_probs=39.9

Q ss_pred             cccccchHHHHHHHHHhhccC----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADY----RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++|.+..++.|..|+...    ..+.+-|+|++|+||||||+.+.++.
T Consensus        13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            356899999999999998641    26789999999999999999998865

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.51  E-value=0.00015  Score=58.45  Aligned_cols=26  Identities=31%  Similarity=0.248  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +.+.+|||.|.+|+||||||+.+-.-
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~l   85 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQAL   85 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999877543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.49  E-value=9.6e-05  Score=58.34  Aligned_cols=27  Identities=41%  Similarity=0.581  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|+|||||.+.+++-.
T Consensus        26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          26 PKGEITGILGPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999998854

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.49  E-value=0.00015  Score=63.18  Aligned_cols=45  Identities=22%  Similarity=0.400  Sum_probs=39.5

Q ss_pred             cccchHHHHHHHHHhhc------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIA------DYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++|.+..++.++..|.      +...+++.++|+.|+||||||+.|.+-.
T Consensus        77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence            47899999999999983      3567899999999999999999998754

>PRK06696 uridine kinase; Validated

Probab=97.48  E-value=0.00023  Score=55.38  Aligned_cols=27  Identities=30%  Similarity=0.394  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+|+|.|.+|+||||||+.|....
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l   46 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEI   46 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999987653

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.46  E-value=0.00014  Score=60.24  Aligned_cols=37  Identities=27%  Similarity=0.370  Sum_probs=28.8

Q ss_pred             HhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCcc
Q 041747          166 GHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFD  205 (211)
Q Consensus       166 ~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~  205 (211)
                      .++....+.-.=.||++|+||||||+.|-...   ..+|.
T Consensus        41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~   77 (436)
T COG2256          41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE   77 (436)
T ss_pred             HHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE
Confidence            33445678888899999999999999998855   44554

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.43  E-value=0.00025  Score=57.88  Aligned_cols=46  Identities=22%  Similarity=0.319  Sum_probs=39.9

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+..++.......+-++|..|+||||+++.+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5578999999999999877666678999999999999999998764

>PLN03025 replication factor C subunit; Provisional

Probab=97.43  E-value=0.00026  Score=58.10  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=37.6

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+..|..++...+..-+-++|+.|+||||+|+.+.+..
T Consensus        13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            5578988888888887776666666799999999999999987753

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.41  E-value=0.00025  Score=64.06  Aligned_cols=46  Identities=41%  Similarity=0.486  Sum_probs=35.5

Q ss_pred             ccccchHHHHH---HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLD---EVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|.+..+.   .+...+..+....+-++|++|+||||||+.+.+..
T Consensus        28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~   76 (725)
T PRK13341         28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT   76 (725)
T ss_pred             HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            45778776663   45555666667778899999999999999998865

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.39  E-value=0.00016  Score=45.36  Aligned_cols=22  Identities=45%  Similarity=0.673  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +|.|.|..|+||||+++.+-+.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999876

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.39  E-value=0.00016  Score=51.57  Aligned_cols=26  Identities=38%  Similarity=0.583  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|.+|+|||||++.+....
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            56799999999999999999998765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.34  E-value=0.00033  Score=58.56  Aligned_cols=46  Identities=26%  Similarity=0.344  Sum_probs=36.9

Q ss_pred             ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.|.+..+++|...+.-             ...+-+-++|++|+||||||+.+.+..
T Consensus       122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l  180 (364)
T TIGR01242       122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET  180 (364)
T ss_pred             HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence            4578999998888877631             234568899999999999999999865

Many proteins may score above the trusted cutoff because an internal

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.33  E-value=0.00036  Score=60.65  Aligned_cols=46  Identities=24%  Similarity=0.294  Sum_probs=38.8

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+..|..++..+.. ..+-++|+.|+||||+|+.+.+..
T Consensus        14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l   60 (504)
T PRK14963         14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV   60 (504)
T ss_pred             HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999988876554 566899999999999999988765

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.33  E-value=0.00072  Score=54.40  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=28.7

Q ss_pred             HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          163 EVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       163 ~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.-.++.+.+..++.|+|.+|+|||||+..+.+..
T Consensus        94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463         94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            33344445789999999999999999999998875

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.32  E-value=0.00021  Score=54.88  Aligned_cols=27  Identities=33%  Similarity=0.506  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.32  E-value=0.00021  Score=55.18  Aligned_cols=27  Identities=30%  Similarity=0.414  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.31  E-value=0.00039  Score=56.85  Aligned_cols=47  Identities=21%  Similarity=0.155  Sum_probs=39.3

Q ss_pred             cccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++|.+...+.+..++.... ..++-++|+.|+||||||+.+++..
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            3567899999999999987654 4577779999999999999998764

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.31  E-value=0.00022  Score=56.15  Aligned_cols=26  Identities=38%  Similarity=0.506  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|.|||||++.+.+-
T Consensus        28 ~~G~~~~iiGPNGaGKSTLlK~iLGl   53 (254)
T COG1121          28 EKGEITALIGPNGAGKSTLLKAILGL   53 (254)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            35689999999999999999999883

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.30  E-value=0.00024  Score=53.21  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ...+++|+|++|+|||||.+.+.
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            67899999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.30  E-value=0.00034  Score=52.21  Aligned_cols=27  Identities=37%  Similarity=0.458  Sum_probs=18.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+.+-|+|.+|+|||||++.++...
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            567999999999999999999998876

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.28  E-value=0.00024  Score=54.80  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.27  E-value=0.00026  Score=53.06  Aligned_cols=27  Identities=37%  Similarity=0.583  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+..-.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            477899999999999999999998754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.26  E-value=0.00039  Score=64.06  Aligned_cols=46  Identities=22%  Similarity=0.297  Sum_probs=38.5

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++.+.+.++..|......-+-++|++|+|||++|+.+....
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i  224 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI  224 (821)
T ss_pred             CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999976444455699999999999999987654

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.25  E-value=0.00026  Score=54.78  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.24  E-value=0.00028  Score=55.22  Aligned_cols=27  Identities=33%  Similarity=0.544  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.24  E-value=0.0003  Score=52.66  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+....
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=97.24  E-value=0.00046  Score=56.79  Aligned_cols=46  Identities=30%  Similarity=0.372  Sum_probs=32.7

Q ss_pred             CccccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          149 MVMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       149 ~~~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++.++|....+   -..++.+.+..+-.||++|+||||||+.|-+..
T Consensus       141 vGQ~hlv~q~gll---rs~ieq~~ipSmIlWGppG~GKTtlArlia~ts  186 (554)
T KOG2028|consen  141 VGQSHLVGQDGLL---RSLIEQNRIPSMILWGPPGTGKTTLARLIASTS  186 (554)
T ss_pred             cchhhhcCcchHH---HHHHHcCCCCceEEecCCCCchHHHHHHHHhhc
Confidence            3444455543332   233445678888999999999999999998865

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.24  E-value=0.00029  Score=54.21  Aligned_cols=27  Identities=33%  Similarity=0.426  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.23  E-value=0.00038  Score=53.50  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=25.7

Q ss_pred             hhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          167 HIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       167 ~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+.+.++++|+++|..|+|||||.+.+...
T Consensus        16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             HhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            345568999999999999999999998654

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.23  E-value=0.0003  Score=54.39  Aligned_cols=27  Identities=48%  Similarity=0.783  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.23  E-value=0.00031  Score=53.99  Aligned_cols=27  Identities=33%  Similarity=0.517  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.+.+..
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.23  E-value=0.00031  Score=54.71  Aligned_cols=27  Identities=41%  Similarity=0.432  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999999998754

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.22  E-value=0.00031  Score=54.10  Aligned_cols=27  Identities=41%  Similarity=0.490  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=97.21  E-value=0.00031  Score=54.19  Aligned_cols=26  Identities=31%  Similarity=0.615  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .. .+++|+|.+|.|||||++.+.+-.
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence            46 999999999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.21  E-value=0.00035  Score=53.48  Aligned_cols=27  Identities=33%  Similarity=0.462  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|+.|+|++|+|||||.+.|+.=+
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence            478899999999999999999997643

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.21  E-value=0.00032  Score=53.71  Aligned_cols=27  Identities=48%  Similarity=0.612  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.21  E-value=0.00032  Score=55.04  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          26 PSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.20  E-value=0.0003  Score=54.14  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            367899999999999999999998754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.20  E-value=0.00093  Score=47.56  Aligned_cols=26  Identities=35%  Similarity=0.348  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.+.|.-|.|||||++.+....
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            56799999999999999999998865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.20  E-value=0.00058  Score=50.18  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=30.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          159 SMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       159 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++|..+|.  + +++.++|..|+|||||++.+..+.
T Consensus        24 ~g~~~l~~~l~--~-k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   24 EGIEELKELLK--G-KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TTHHHHHHHHT--T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCHHHHHHHhc--C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence            35677777775  4 899999999999999999998863

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.20  E-value=0.00034  Score=54.16  Aligned_cols=27  Identities=33%  Similarity=0.442  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+..-.
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.20  E-value=0.00035  Score=54.13  Aligned_cols=27  Identities=44%  Similarity=0.630  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998753

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.20  E-value=0.00036  Score=54.28  Aligned_cols=27  Identities=41%  Similarity=0.513  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          24 PKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            367899999999999999999998753

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.19  E-value=0.00034  Score=54.97  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.19  E-value=0.00036  Score=54.03  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +...+++|+|++|+|||||...+..=
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            57889999999999999999999764

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.19  E-value=0.00068  Score=58.50  Aligned_cols=46  Identities=24%  Similarity=0.296  Sum_probs=37.5

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|.+.....|...+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus        14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l   60 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL   60 (472)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5688998888888887776655 457889999999999999997653

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.19  E-value=0.00061  Score=54.26  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...-+-++|++|+||||+|+.+.+.
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~   65 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKL   65 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHH
Confidence            3456778999999999999999765

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.18  E-value=0.00035  Score=54.79  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998753

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.18  E-value=0.00058  Score=57.62  Aligned_cols=46  Identities=28%  Similarity=0.346  Sum_probs=36.8

Q ss_pred             ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++.|.+..++++...+..             ..++-|-++|++|+|||+||+.+.+..
T Consensus       131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~  189 (389)
T PRK03992        131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET  189 (389)
T ss_pred             HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence            4577999988888876531             245668899999999999999998865

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.17  E-value=0.00039  Score=52.86  Aligned_cols=27  Identities=26%  Similarity=0.445  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            367799999999999999999998864

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.17  E-value=0.00057  Score=63.07  Aligned_cols=47  Identities=23%  Similarity=0.319  Sum_probs=39.3

Q ss_pred             cccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++++|++.++..++..|......-+-++|.+|+||||||+.+....
T Consensus       186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i  232 (852)
T TIGR03345       186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI  232 (852)
T ss_pred             CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999998876555556699999999999999988754

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.16  E-value=0.00038  Score=54.99  Aligned_cols=26  Identities=38%  Similarity=0.735  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|.+|+|||||++.+.+..
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999998764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.16  E-value=0.00039  Score=53.52  Aligned_cols=27  Identities=33%  Similarity=0.386  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.16  E-value=0.00064  Score=52.85  Aligned_cols=27  Identities=33%  Similarity=0.447  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....++||+|..|+|||||++.+-.-.
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence            478899999999999999999997643

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.15  E-value=0.0004  Score=54.40  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        25 RPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            477899999999999999999998754

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.15  E-value=0.00041  Score=53.11  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+....
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         25 NAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998764

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.15  E-value=0.00048  Score=47.08  Aligned_cols=23  Identities=30%  Similarity=0.255  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ....++|+|++|+|||||++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            56889999999999999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=97.15  E-value=0.00087  Score=55.32  Aligned_cols=45  Identities=24%  Similarity=0.263  Sum_probs=38.3

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..++|.+..+..|+-.+.++...-+.|.|.+|+|||||++.+.+-
T Consensus         4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~   48 (337)
T TIGR02030         4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL   48 (337)
T ss_pred             cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence            557899999988888787777777779999999999999999643

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.15  E-value=0.00039  Score=54.03  Aligned_cols=27  Identities=30%  Similarity=0.490  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.14  E-value=0.00041  Score=55.09  Aligned_cols=27  Identities=30%  Similarity=0.394  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         25 ESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.14  E-value=0.00049  Score=52.48  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+|.|+|++|+|||||++.+....
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999998754

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.14  E-value=0.00041  Score=53.07  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|.|||||++.+.+-.
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            56899999999999999999998754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.14  E-value=0.00043  Score=53.87  Aligned_cols=27  Identities=30%  Similarity=0.330  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+..
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         31 RAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999998754

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.14  E-value=0.00042  Score=54.14  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.13  E-value=0.00069  Score=61.72  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=38.7

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|++.+...++..|......-+-++|++|+|||+||+.+....
T Consensus       182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999998876555556699999999999999998754

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.00045  Score=53.93  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|+|||||.+.|-.=
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            47889999999999999999999753

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.13  E-value=0.00044  Score=53.56  Aligned_cols=27  Identities=41%  Similarity=0.564  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.13  E-value=0.00045  Score=53.14  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.+.+-.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.12  E-value=0.00045  Score=53.94  Aligned_cols=27  Identities=33%  Similarity=0.550  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.11  E-value=0.00043  Score=54.15  Aligned_cols=27  Identities=37%  Similarity=0.505  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            367899999999999999999998753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.11  E-value=0.00049  Score=52.50  Aligned_cols=27  Identities=37%  Similarity=0.470  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            478899999999999999999998764

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.11  E-value=0.00047  Score=53.77  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|.+|.|||||++.+.+-.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999998753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.10  E-value=0.00047  Score=54.16  Aligned_cols=26  Identities=31%  Similarity=0.468  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|.|||||++.+.+-
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.10  E-value=0.0005  Score=52.73  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            367899999999999999999998753

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.09  E-value=0.001  Score=55.65  Aligned_cols=46  Identities=24%  Similarity=0.341  Sum_probs=38.4

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+...+..+++ ..+-++|+.|+||||||+.+....
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l   62 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL   62 (363)
T ss_pred             hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence            5678999999999988876554 567899999999999999987654

>PRK08727 hypothetical protein; Validated

Probab=97.09  E-value=0.0015  Score=51.15  Aligned_cols=43  Identities=26%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +|-.+....+..........-+.|+|..|+|||.|++.+.+..
T Consensus        23 ~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~   65 (233)
T PRK08727         23 AAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA   65 (233)
T ss_pred             CCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4445555544444433344679999999999999999998865

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.09  E-value=0.00049  Score=54.72  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.09  E-value=0.00051  Score=52.81  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.+.+-.
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.09  E-value=0.00053  Score=52.23  Aligned_cols=27  Identities=33%  Similarity=0.480  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        24 NAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998864

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.09  E-value=0.00051  Score=53.99  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+..-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          25 AKGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.08  E-value=0.00041  Score=53.33  Aligned_cols=23  Identities=43%  Similarity=0.661  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++|+|++|.|||||++.+.+-.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            99999999999999999998753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=97.08  E-value=0.00053  Score=53.16  Aligned_cols=27  Identities=33%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.|..-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         26 RPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998754

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.08  E-value=0.0012  Score=51.89  Aligned_cols=40  Identities=23%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          158 DSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       158 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+..+-.+........+-|+|+.|+|||+|++.+.+..
T Consensus        30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~   69 (235)
T PRK08084         30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL   69 (235)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3344455454444556789999999999999999998864

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.07  E-value=0.00053  Score=53.88  Aligned_cols=27  Identities=33%  Similarity=0.389  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         26 PQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998764

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.07  E-value=0.00055  Score=52.53  Aligned_cols=27  Identities=33%  Similarity=0.404  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999998854

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.07  E-value=0.00083  Score=54.16  Aligned_cols=26  Identities=50%  Similarity=0.709  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+|.++|++|+||||++..+....
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999987765

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.06  E-value=0.00055  Score=54.25  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         28 KPGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998754

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=97.06  E-value=0.0053  Score=53.01  Aligned_cols=27  Identities=33%  Similarity=0.444  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +--..|++||++|+||+||.+.+|.+.
T Consensus       414 d~~srvAlVGPNG~GKsTLlKl~~gdl  440 (614)
T KOG0927|consen  414 DLDSRVALVGPNGAGKSTLLKLITGDL  440 (614)
T ss_pred             CcccceeEecCCCCchhhhHHHHhhcc
Confidence            345689999999999999999999876

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.06  E-value=0.00055  Score=54.17  Aligned_cols=26  Identities=35%  Similarity=0.542  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+.+-
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            46789999999999999999999863

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.05  E-value=0.00059  Score=52.65  Aligned_cols=27  Identities=44%  Similarity=0.598  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++++|.+|+|||||.+.|.+-.
T Consensus        27 ~~Geiv~llG~NGaGKTTlLkti~Gl~   53 (237)
T COG0410          27 ERGEIVALLGRNGAGKTTLLKTIMGLV   53 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            578899999999999999999999865

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.05  E-value=0.00066  Score=50.57  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            467899999999999999999998754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.05  E-value=0.00058  Score=53.94  Aligned_cols=27  Identities=37%  Similarity=0.496  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         27 PDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999998754

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=97.04  E-value=0.0006  Score=52.93  Aligned_cols=27  Identities=37%  Similarity=0.561  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        32 NAGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.04  E-value=0.0006  Score=52.65  Aligned_cols=27  Identities=37%  Similarity=0.524  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.03  E-value=0.0006  Score=53.59  Aligned_cols=27  Identities=33%  Similarity=0.448  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.03  E-value=0.00061  Score=53.47  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         25 DQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.03  E-value=0.0011  Score=57.00  Aligned_cols=47  Identities=19%  Similarity=0.335  Sum_probs=39.2

Q ss_pred             cccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -.+++|.+..+..|..++..+++. .+-++|+.|+||||+|+.+.+..
T Consensus        17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L   64 (484)
T PRK14956         17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL   64 (484)
T ss_pred             HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            356899999999999998876654 57899999999999999997654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.03  E-value=0.00068  Score=50.42  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            477899999999999999999998864

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=97.03  E-value=0.00062  Score=53.32  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            478899999999999999999998753

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.02  E-value=0.00087  Score=61.98  Aligned_cols=46  Identities=22%  Similarity=0.292  Sum_probs=38.5

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++.++..++..|......-+-++|++|+||||||+.+-...
T Consensus       178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999998876555556699999999999999987754

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.02  E-value=0.00066  Score=49.08  Aligned_cols=27  Identities=41%  Similarity=0.578  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999998754

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10536 hypothetical protein; Provisional

Probab=97.02  E-value=0.0056  Score=48.46  Aligned_cols=44  Identities=16%  Similarity=0.095  Sum_probs=35.5

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+.++......++.+|.+  ..++.+.|++|+|||+||..+.-+.
T Consensus        55 ~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~   98 (262)
T PRK10536         55 SPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEA   98 (262)
T ss_pred             ccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3456777778888888874  4599999999999999999987753

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.02  E-value=0.00069  Score=50.83  Aligned_cols=27  Identities=41%  Similarity=0.640  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            377899999999999999999998854

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.02  E-value=0.00064  Score=53.39  Aligned_cols=27  Identities=33%  Similarity=0.441  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         27 NSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998754

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.01  E-value=0.00065  Score=53.63  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998753

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.01  E-value=0.00065  Score=53.68  Aligned_cols=25  Identities=28%  Similarity=0.537  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....+++|+|.+|.|||||++.+..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         27 EEKSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4678999999999999999999975

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.01  E-value=0.00067  Score=52.47  Aligned_cols=27  Identities=33%  Similarity=0.447  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          28 RAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            478899999999999999999998754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.01  E-value=0.00066  Score=53.54  Aligned_cols=27  Identities=37%  Similarity=0.554  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        25 PKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            478899999999999999999998653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.01  E-value=0.00072  Score=50.08  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.01  E-value=0.00067  Score=51.81  Aligned_cols=27  Identities=33%  Similarity=0.361  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||.+.+.+-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          24 AAGEALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999998754

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=97.00  E-value=0.00065  Score=53.24  Aligned_cols=27  Identities=41%  Similarity=0.597  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|..-.
T Consensus        45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          45 EKGEIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.00  E-value=0.0007  Score=49.99  Aligned_cols=27  Identities=37%  Similarity=0.589  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=97.00  E-value=0.00065  Score=52.35  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+....
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            478899999999999999999998764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.00  E-value=0.00065  Score=51.51  Aligned_cols=26  Identities=38%  Similarity=0.523  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+...
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999874

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.00  E-value=0.00071  Score=50.40  Aligned_cols=27  Identities=41%  Similarity=0.571  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=97.00  E-value=0.00066  Score=54.31  Aligned_cols=27  Identities=33%  Similarity=0.546  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          48 REGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.00  E-value=0.0012  Score=57.92  Aligned_cols=46  Identities=26%  Similarity=0.316  Sum_probs=38.0

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+..|...+..+.+ ..+-++|+.|+||||||+.+.+..
T Consensus        16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L   62 (546)
T PRK14957         16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL   62 (546)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999876554 446789999999999999987643

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.00  E-value=0.00067  Score=53.88  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         28 EPRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999998753

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.00  E-value=0.0007  Score=52.04  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.00  E-value=0.00072  Score=53.75  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|..-.
T Consensus        36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         36 PENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999998643

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.99  E-value=0.00062  Score=54.33  Aligned_cols=27  Identities=41%  Similarity=0.570  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         35 PAGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999998754

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.99  E-value=0.00067  Score=53.72  Aligned_cols=27  Identities=33%  Similarity=0.517  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         29 REQEIVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998754

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.99  E-value=0.0014  Score=55.54  Aligned_cols=47  Identities=17%  Similarity=0.206  Sum_probs=38.1

Q ss_pred             cccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -.+++|.+..++.|.+++.++.+. -+-++|+.|+||||+|..+-+..
T Consensus        15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l   62 (397)
T PRK14955         15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV   62 (397)
T ss_pred             HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence            356889999999999988765554 47789999999999999876543

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.99  E-value=0.00068  Score=52.81  Aligned_cols=27  Identities=41%  Similarity=0.533  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        24 PKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            377899999999999999999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.99  E-value=0.00059  Score=52.17  Aligned_cols=27  Identities=33%  Similarity=0.607  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|.+|+|++|.|||||.+.+..+.
T Consensus        25 ~pGev~ailGPNGAGKSTlLk~LsGel   51 (259)
T COG4559          25 RPGEVLAILGPNGAGKSTLLKALSGEL   51 (259)
T ss_pred             cCCcEEEEECCCCccHHHHHHHhhCcc
Confidence            467899999999999999999999876

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.99  E-value=0.00075  Score=50.50  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.99  E-value=0.0007  Score=50.86  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PLN02796 D-glycerate 3-kinase

Probab=96.99  E-value=0.00078  Score=55.45  Aligned_cols=26  Identities=38%  Similarity=0.438  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+-+|+|.|..|+|||||++.+....
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL  124 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLF  124 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence            56789999999999999999998765

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.98  E-value=0.00072  Score=52.97  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          27 PPGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            477899999999999999999998764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.98  E-value=0.00068  Score=54.55  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         31 EDGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=96.98  E-value=0.00072  Score=53.67  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         29 NAGDVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999998864

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.98  E-value=0.00074  Score=52.73  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+..-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.97  E-value=0.00069  Score=53.79  Aligned_cols=27  Identities=41%  Similarity=0.764  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         30 YPGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999999864

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=96.97  E-value=0.0014  Score=54.33  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=39.9

Q ss_pred             cccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -+.++|.+..+.-|+..+.++++.=+-|.|..|+||||+|+.+++-.
T Consensus        16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l   62 (350)
T CHL00081         16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL   62 (350)
T ss_pred             HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            36689999988888888887777766699999999999999997754

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=96.97  E-value=0.00072  Score=53.44  Aligned_cols=26  Identities=42%  Similarity=0.677  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+.+-
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         29 YPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            36789999999999999999999753

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.97  E-value=0.00072  Score=54.19  Aligned_cols=27  Identities=37%  Similarity=0.465  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         31 PGGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=96.97  E-value=0.00079  Score=53.79  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.|.+-.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         43 PEKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999998754

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.96  E-value=0.00071  Score=51.75  Aligned_cols=27  Identities=33%  Similarity=0.411  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence            467899999999999999999998764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=96.96  E-value=0.00073  Score=54.05  Aligned_cols=27  Identities=37%  Similarity=0.647  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         31 PRGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=96.96  E-value=0.00066  Score=51.79  Aligned_cols=20  Identities=20%  Similarity=0.584  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 041747          175 IIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~  194 (211)
                      +++|+|++|+|||||++.++
T Consensus        24 ~~~i~G~nGsGKStll~al~   43 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIR   43 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            89999999999999999987

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.96  E-value=0.0007  Score=54.21  Aligned_cols=27  Identities=33%  Similarity=0.548  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         25 SLSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999998753

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.96  E-value=0.00079  Score=53.26  Aligned_cols=27  Identities=26%  Similarity=0.485  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         28 PENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            467899999999999999999998753

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.96  E-value=0.00077  Score=53.32  Aligned_cols=27  Identities=33%  Similarity=0.564  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         28 PQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999998754

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.95  E-value=0.00065  Score=46.51  Aligned_cols=22  Identities=45%  Similarity=0.768  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhh
Q 041747          176 IGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       176 i~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      |-|+|.+|+|||+||+.+..+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999976543

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.95  E-value=0.00079  Score=52.64  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          25 PAGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            477899999999999999999998754

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.95  E-value=0.00077  Score=53.33  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        24 AAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.95  E-value=0.0016  Score=49.13  Aligned_cols=36  Identities=28%  Similarity=0.121  Sum_probs=26.7

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++.+.. .....+.|+|..|+|||||++.+.+..
T Consensus        14 ~~~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          14 QAAYLWLAV-EARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             HHHHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            333444333 256799999999999999999987643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.95  E-value=0.00078  Score=52.39  Aligned_cols=27  Identities=44%  Similarity=0.646  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|.+|+|||||++.+.+-.
T Consensus        46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          46 PRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.95  E-value=0.00075  Score=53.64  Aligned_cols=27  Identities=30%  Similarity=0.604  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   52 (258)
T PRK13548         26 RPGEVVAILGPNGAGKSTLLRALSGEL   52 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.95  E-value=0.00078  Score=53.58  Aligned_cols=27  Identities=30%  Similarity=0.616  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         37 AKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            477899999999999999999998653

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.95  E-value=0.0017  Score=55.76  Aligned_cols=43  Identities=14%  Similarity=0.109  Sum_probs=37.3

Q ss_pred             cccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|++..++.+...+.  ...-+-+.|++|+|||+||+.+....
T Consensus        21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~   63 (498)
T PRK13531         21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAF   63 (498)
T ss_pred             hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHh
Confidence            46899999999998887  56678899999999999999998754

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=96.95  E-value=0.00083  Score=53.80  Aligned_cols=27  Identities=30%  Similarity=0.490  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         48 HENEVTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            577899999999999999999998753

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.94  E-value=0.00079  Score=53.87  Aligned_cols=26  Identities=38%  Similarity=0.625  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+..-
T Consensus        37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         37 PRGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            47789999999999999999999875

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.94  E-value=0.0013  Score=56.78  Aligned_cols=26  Identities=42%  Similarity=0.556  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...||+++|++|+||||++.++....
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHH
Confidence            45799999999999999999998765

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=96.94  E-value=0.00084  Score=51.88  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|++-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          25 PTGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999999754

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.93  E-value=0.00086  Score=53.59  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+.+-
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         45 EKHAVTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            46789999999999999999999763

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.93  E-value=0.00085  Score=51.77  Aligned_cols=27  Identities=33%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+....
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         35 DAGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998754

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.93  E-value=0.00077  Score=54.52  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         35 KKNKVTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.93  E-value=0.00085  Score=53.30  Aligned_cols=27  Identities=41%  Similarity=0.674  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~   50 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKL   50 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            367899999999999999999998765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.93  E-value=0.00089  Score=51.91  Aligned_cols=25  Identities=36%  Similarity=0.675  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      +...+|+|+|..|.|||||.+.+..
T Consensus        28 ~~GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          28 NQGEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhc
Confidence            4788999999999999999999986

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=96.93  E-value=0.00079  Score=53.40  Aligned_cols=27  Identities=37%  Similarity=0.553  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (256)
T TIGR03873        25 PPGSLTGLLGPNGSGKSTLLRLLAGAL   51 (256)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            477899999999999999999998754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.93  E-value=0.0014  Score=54.68  Aligned_cols=26  Identities=42%  Similarity=0.556  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++.++|+.|+||||++.++-...
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.93  E-value=0.00084  Score=53.78  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         33 NEGEYVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998754

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.93  E-value=0.0021  Score=56.09  Aligned_cols=54  Identities=30%  Similarity=0.484  Sum_probs=40.2

Q ss_pred             ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747          152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV  210 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv  210 (211)
                      .+++--+.-++++-.||.+     ...+++-+.|++|+||||.++.+.++.     .|+.+=|.
T Consensus        19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~   77 (519)
T PF03215_consen   19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWI   77 (519)
T ss_pred             HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEec
Confidence            3455556677888888864     236799999999999999999998865     35555553

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.92  E-value=0.00085  Score=52.98  Aligned_cols=26  Identities=38%  Similarity=0.713  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.|..-
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14262         27 FKNQITAIIGPSGCGKTTLLRSINRM   52 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999999863

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.91  E-value=0.0014  Score=60.73  Aligned_cols=46  Identities=22%  Similarity=0.302  Sum_probs=38.3

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++.++..++..|......-+-++|++|+|||+|++.+....
T Consensus       173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i  218 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI  218 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            4589999999999998876555556689999999999999987753

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.91  E-value=0.00075  Score=52.09  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHH
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ..+++|+|++|.|||||.+.|.
T Consensus        25 ~~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          25 KSFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999976

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=96.91  E-value=0.00086  Score=54.63  Aligned_cols=27  Identities=33%  Similarity=0.497  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        28 ARGECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=96.91  E-value=0.00086  Score=53.17  Aligned_cols=27  Identities=37%  Similarity=0.491  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|.+|.|||||++.+..-.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (255)
T PRK11231         26 PTGKITALIGPNGCGKSTLLKCFARLL   52 (255)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998753

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.91  E-value=0.0016  Score=54.97  Aligned_cols=46  Identities=28%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.|.+..+++|...+.    .         ..++-+-++|++|+|||+||+.+.+..
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l  203 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT  203 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence            346788887777776553    1         246778899999999999999998865

>PRK06893 DNA replication initiation factor; Validated

Probab=96.91  E-value=0.00098  Score=52.08  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+-++|+.|+|||+|++.+.+..
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999999875

>PRK05439 pantothenate kinase; Provisional

Probab=96.91  E-value=0.0017  Score=52.88  Aligned_cols=27  Identities=33%  Similarity=0.327  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+-+|||.|..|+||||||+.+....
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l  110 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALL  110 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999987643

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.90  E-value=0.0015  Score=55.36  Aligned_cols=25  Identities=40%  Similarity=0.517  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +..+|+++|++|+||||++..+-..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999988664

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.90  E-value=0.00094  Score=51.94  Aligned_cols=27  Identities=30%  Similarity=0.570  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            467899999999999999999998754

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.90  E-value=0.00089  Score=53.97  Aligned_cols=27  Identities=33%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~   57 (282)
T PRK13640         31 PRGSWTALIGHNGSGKSTISKLINGLL   57 (282)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            467899999999999999999998754

>PLN02165 adenylate isopentenyltransferase

Probab=96.90  E-value=0.00091  Score=54.82  Aligned_cols=31  Identities=23%  Similarity=0.444  Sum_probs=26.1

Q ss_pred             hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          167 HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       167 ~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.+....+|.|+|+.|+|||||+..+....
T Consensus        37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l   67 (334)
T PLN02165         37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRF   67 (334)
T ss_pred             cccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence            3456677799999999999999999987764

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=96.90  E-value=0.00082  Score=52.96  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+.+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         25 RPGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            46789999999999999999999885

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=96.90  E-value=0.00097  Score=53.30  Aligned_cols=27  Identities=37%  Similarity=0.523  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         44 EKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            477899999999999999999998754

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.90  E-value=0.00093  Score=52.92  Aligned_cols=27  Identities=37%  Similarity=0.557  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         31 LKNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999998754

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=96.90  E-value=0.00097  Score=51.80  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          38 HPGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            478899999999999999999998754

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.90  E-value=0.00092  Score=53.45  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|.+-.
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998754

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.90  E-value=0.0009  Score=53.69  Aligned_cols=27  Identities=41%  Similarity=0.601  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+..
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~   51 (272)
T PRK13547         25 EPGRVTALLGRNGAGKSTLLKALAGDL   51 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=96.89  E-value=0.00099  Score=53.16  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+..-
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   59 (264)
T PRK14243         34 PKNQITAFIGPSGCGKSTILRCFNRL   59 (264)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            46789999999999999999999863

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.89  E-value=0.0009  Score=53.84  Aligned_cols=27  Identities=19%  Similarity=0.395  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (279)
T PRK13650         31 KQGEWLSIIGHNGSGKSTTVRLIDGLL   57 (279)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            478899999999999999999998754

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.89  E-value=0.00095  Score=53.57  Aligned_cols=26  Identities=38%  Similarity=0.557  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+.+-
T Consensus        44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl   69 (274)
T PRK14265         44 PAKKIIAFIGPSGCGKSTLLRCFNRM   69 (274)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            47789999999999999999999864

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.89  E-value=0.00096  Score=52.81  Aligned_cols=25  Identities=40%  Similarity=0.635  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....+++|+|.+|+|||||++.+.+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         30 PKNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4678999999999999999999985

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=96.88  E-value=0.00091  Score=55.47  Aligned_cols=27  Identities=33%  Similarity=0.475  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~   55 (343)
T PRK11153         29 PAGEIFGVIGASGAGKSTLIRCINLLE   55 (343)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            477899999999999999999998754

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.88  E-value=0.0013  Score=53.90  Aligned_cols=26  Identities=42%  Similarity=0.660  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+|+++|++|+||||++..+....
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999998765

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.88  E-value=0.0017  Score=57.80  Aligned_cols=49  Identities=24%  Similarity=0.290  Sum_probs=39.9

Q ss_pred             CccccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          149 MVMEETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       149 ~~~~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++++|.+..+.++..||.+     ...+++.++|++|+||||+++.+.+..
T Consensus        81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l  134 (637)
T TIGR00602        81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL  134 (637)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3445688999889999999875     234679999999999999999998754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.88  E-value=0.001  Score=52.57  Aligned_cols=26  Identities=42%  Similarity=0.689  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+.+-
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (251)
T PRK14270         28 YENKITALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            47789999999999999999999874

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.88  E-value=0.001  Score=51.45  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+....
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          28 KPGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999999998753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.87  E-value=0.00094  Score=55.98  Aligned_cols=26  Identities=46%  Similarity=0.638  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.++|+++|++|+||||++..+....
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            45899999999999999999997655

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=96.87  E-value=0.001  Score=52.59  Aligned_cols=26  Identities=35%  Similarity=0.565  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.|.+-
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         27 EENQVTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999999864

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.87  E-value=0.0021  Score=50.26  Aligned_cols=54  Identities=20%  Similarity=0.442  Sum_probs=40.4

Q ss_pred             CcccCCccccccchHHHHHHHHHh----hccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          144 PTVDGMVMEETVGFDSMLDEVWGH----IADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       144 ~~~~~~~~~~~~g~~~~~~~l~~~----L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++.+.+.++|.+..++.|+.=    +......-+=+||..|+|||+|++.+.+..
T Consensus        19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y   76 (249)
T PF05673_consen   19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY   76 (249)
T ss_pred             CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence            444555667789988877776543    333455667789999999999999998876

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=96.87  E-value=0.00096  Score=54.94  Aligned_cols=27  Identities=19%  Similarity=0.331  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll   57 (326)
T PRK11022         31 KQGEVVGIVGESGSGKSVSSLAIMGLI   57 (326)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            477899999999999999999998754

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=96.87  E-value=0.00099  Score=52.79  Aligned_cols=27  Identities=26%  Similarity=0.317  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         27 QRGRVLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=96.87  E-value=0.0028  Score=51.86  Aligned_cols=59  Identities=20%  Similarity=0.361  Sum_probs=44.8

Q ss_pred             ccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhhh---hcCCCccEEEEe
Q 041747          152 EETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKFL---DINHHFDLVIWV  210 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~~---~v~~~F~~~~wv  210 (211)
                      .+++|.+..++.+..++..+. ....-++|+.|+||||||+.+.....   ....|+|...|.
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~   66 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK   66 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence            457899999999999987655 45668899999999999999877531   234566765553

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.87  E-value=0.00099  Score=53.21  Aligned_cols=27  Identities=41%  Similarity=0.731  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+..
T Consensus        48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~   74 (264)
T PRK13546         48 YEGDVIGLVGINGSGKSTLSNIIGGSL   74 (264)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            477899999999999999999998864

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.86  E-value=0.0011  Score=52.79  Aligned_cols=27  Identities=37%  Similarity=0.674  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~   57 (259)
T PRK14260         31 YRNKVTAIIGPSGCGKSTFIKTLNRIS   57 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999998753

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.86  E-value=0.001  Score=51.97  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998753

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=96.86  E-value=0.00094  Score=53.28  Aligned_cols=27  Identities=30%  Similarity=0.476  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+..
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   57 (265)
T PRK10253         31 PDGHFTAIIGPNGCGKSTLLRTLSRLM   57 (265)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999998864

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=96.86  E-value=0.0011  Score=51.50  Aligned_cols=27  Identities=37%  Similarity=0.604  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        24 PKNSVYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.86  E-value=0.0022  Score=58.44  Aligned_cols=46  Identities=24%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++.++..++..|......-+-++|++|+|||+||+.+....
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i  231 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999998875433444589999999999999998753

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.86  E-value=0.002  Score=50.11  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=27.5

Q ss_pred             HHHHHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+-.+... .....+-++|..|+|||+||+.+++..
T Consensus        28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            33444444331 345678899999999999999999864

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=96.86  E-value=0.00094  Score=52.78  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|+|||||++.+.+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         31 NKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            46789999999999999999999874

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.86  E-value=0.0011  Score=51.67  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+..
T Consensus        27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          27 KPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            467899999999999999999998754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=96.85  E-value=0.001  Score=53.13  Aligned_cols=27  Identities=30%  Similarity=0.432  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.|..-.
T Consensus        37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~   63 (267)
T PRK15112         37 REGQTLAIIGENGSGKSTLAKMLAGMI   63 (267)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.85  E-value=0.0011  Score=52.36  Aligned_cols=27  Identities=33%  Similarity=0.441  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         28 EEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            467899999999999999999998754

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.85  E-value=0.001  Score=53.80  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~   57 (287)
T PRK13641         31 EEGSFVALVGHTGSGKSTLMQHFNALL   57 (287)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998754

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=96.85  E-value=0.0011  Score=52.15  Aligned_cols=27  Identities=26%  Similarity=0.358  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+....
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        26 DPGELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.85  E-value=0.0011  Score=52.48  Aligned_cols=25  Identities=40%  Similarity=0.609  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....+++|+|.+|.|||||++.|..
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255         29 NQNEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3678999999999999999999976

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.84  E-value=0.00099  Score=52.17  Aligned_cols=27  Identities=41%  Similarity=0.517  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         29 NQGEIVTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            477899999999999999999998753

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=96.84  E-value=0.001  Score=55.13  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.|..-.
T Consensus        29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~   55 (343)
T TIGR02314        29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (343)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.84  E-value=0.0018  Score=59.31  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=38.9

Q ss_pred             ccccchHHHHHHHHHhhccCCCeE-EEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRI-IGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+..|.+++..+++.- +-++|+.|+||||+|+.+.+..
T Consensus        16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L   62 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL   62 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            568999999999999988766554 5789999999999999988764

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.84  E-value=0.0011  Score=52.21  Aligned_cols=26  Identities=35%  Similarity=0.566  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+..-
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         26 EQNKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999999874

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.84  E-value=0.0021  Score=54.84  Aligned_cols=45  Identities=27%  Similarity=0.375  Sum_probs=35.0

Q ss_pred             cccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++.|.+..+++|...+.    +         ....-+-++|++|+|||+||+.|.+..
T Consensus       184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el  241 (438)
T PTZ00361        184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET  241 (438)
T ss_pred             HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            46688888877777653    1         245567799999999999999999865

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=96.83  E-value=0.001  Score=51.34  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      +..+++|+|++|.|||||++.|.
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHhe
Confidence            35699999999999999999975

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.83  E-value=0.0012  Score=52.10  Aligned_cols=27  Identities=37%  Similarity=0.473  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|....
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         27 PARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999998754

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.83  E-value=0.0012  Score=50.56  Aligned_cols=27  Identities=33%  Similarity=0.417  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          32 KAGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            477899999999999999999998753

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.82  E-value=0.0011  Score=58.22  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++.+|+|.|++|+|||||++.|.+..
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglL   89 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFM   89 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence            467899999999999999999998753

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=96.82  E-value=0.0012  Score=53.63  Aligned_cols=27  Identities=48%  Similarity=0.610  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+.++.|++|.|||||.+.+.+-.
T Consensus        29 ~~Gei~gllG~NGAGKTTllk~l~gl~   55 (293)
T COG1131          29 EPGEIFGLLGPNGAGKTTLLKILAGLL   55 (293)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998754

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=96.82  E-value=0.0011  Score=52.81  Aligned_cols=27  Identities=33%  Similarity=0.409  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        35 EEGETVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998754

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=96.82  E-value=0.0011  Score=50.34  Aligned_cols=27  Identities=41%  Similarity=0.594  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|.||.|.+|.||||+.+.|+.=.
T Consensus        26 e~Gei~GlLG~NGAGKTT~LRmiatlL   52 (245)
T COG4555          26 EEGEITGLLGENGAGKTTLLRMIATLL   52 (245)
T ss_pred             ccceEEEEEcCCCCCchhHHHHHHHhc
Confidence            578999999999999999999998754

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.82  E-value=0.0011  Score=53.22  Aligned_cols=27  Identities=30%  Similarity=0.544  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   52 (275)
T PRK13639         26 EKGEMVALLGPNGAGKSTLFLHFNGIL   52 (275)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998753

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.82  E-value=0.0011  Score=52.41  Aligned_cols=27  Identities=37%  Similarity=0.693  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        27 YPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.82  E-value=0.0011  Score=52.16  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ...+.+|+|++|.|||||++.|+
T Consensus        22 ~~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          22 SPKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHH
Confidence            35699999999999999999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=96.82  E-value=0.0012  Score=54.56  Aligned_cols=27  Identities=30%  Similarity=0.369  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         31 TEGEIRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence            477899999999999999999998753

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.81  E-value=0.0011  Score=53.12  Aligned_cols=27  Identities=37%  Similarity=0.553  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||.+.+.+-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (274)
T PRK13644         26 KKGEYIGIIGKNGSGKSTLALHLNGLL   52 (274)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998854

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=96.81  E-value=0.0011  Score=50.88  Aligned_cols=20  Identities=35%  Similarity=0.622  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 041747          175 IIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~  194 (211)
                      +++|+|++|.|||||...|+
T Consensus        24 ~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999994

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.81  E-value=0.0012  Score=52.29  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ...+.+|+|.+|.|||||+.+|+.
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~   47 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICF   47 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            577899999999999999999974

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.81  E-value=0.0012  Score=52.45  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         36 PKNSVTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998743

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.81  E-value=0.0012  Score=53.08  Aligned_cols=27  Identities=33%  Similarity=0.533  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~   54 (277)
T PRK13652         28 PRNSRIAVIGPNGAGKSTLFRHFNGIL   54 (277)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998754

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.80  E-value=0.0013  Score=48.07  Aligned_cols=27  Identities=33%  Similarity=0.533  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+++|+|.+|.|||||++.+.+..
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356899999999999999999998754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=96.80  E-value=0.0011  Score=52.39  Aligned_cols=24  Identities=38%  Similarity=0.614  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ...+++|+|.+|.|||||++.+..
T Consensus        21 ~Gei~~l~G~nGsGKSTLl~~l~G   44 (248)
T PRK03695         21 AGEILHLVGPNGAGKSTLLARMAG   44 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            668999999999999999999863

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.80  E-value=0.0028  Score=55.64  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=37.4

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ++++|.+..++.+...+......-+-|+|+.|+||||+|+.+++.
T Consensus        65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~  109 (531)
T TIGR02902        65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE  109 (531)
T ss_pred             HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            457899888888888776655566778999999999999999864

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.80  E-value=0.0012  Score=52.09  Aligned_cols=27  Identities=37%  Similarity=0.549  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|....
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         28 QRGTVNALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999998753

>PLN02348 phosphoribulokinase

Probab=96.80  E-value=0.0015  Score=54.69  Aligned_cols=27  Identities=33%  Similarity=0.588  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.+-+|||.|.+|+|||||++.|.+..
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L   73 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVF   73 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999998865

>CHL00181 cbbX CbbX; Provisional

Probab=96.80  E-value=0.0022  Score=51.90  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+-++|++|+||||+|+.+....
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            357789999999999999996643

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=96.80  E-value=0.0012  Score=53.20  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+..
T Consensus        61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~   87 (282)
T cd03291          61 EKGEMLAITGSTGSGKTSLLMLILGEL   87 (282)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998854

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.80  E-value=0.0032  Score=54.70  Aligned_cols=26  Identities=46%  Similarity=0.705  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|+++|++|+||||++.++....
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~l  374 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRF  374 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999987654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=96.80  E-value=0.0012  Score=53.94  Aligned_cols=27  Identities=41%  Similarity=0.481  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++++|++|.|||||++.+.+-.
T Consensus        31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~   57 (306)
T PRK13537         31 QRGECFGLLGPNGAGKTTTLRMLLGLT   57 (306)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.80  E-value=0.0011  Score=50.67  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +++.|.|++|.|||||++.|...
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~   48 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHH
Confidence            89999999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=96.80  E-value=0.0012  Score=52.52  Aligned_cols=27  Identities=33%  Similarity=0.571  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         28 HHGEMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999998754

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.80  E-value=0.0013  Score=51.91  Aligned_cols=26  Identities=31%  Similarity=0.552  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.|.+-
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (250)
T PRK14266         27 PKNSVTALIGPSGCGKSTFIRTLNRM   52 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            46789999999999999999999864

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.79  E-value=0.0012  Score=52.92  Aligned_cols=27  Identities=37%  Similarity=0.489  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (274)
T PRK13647         29 PEGSKTALLGPNGAGKSTLLLHLNGIY   55 (274)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999999998753

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.79  E-value=0.0022  Score=51.46  Aligned_cols=27  Identities=44%  Similarity=0.667  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.++|.++|++|+||||++.++....
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            357899999999999999998887654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=96.79  E-value=0.002  Score=56.87  Aligned_cols=46  Identities=17%  Similarity=0.283  Sum_probs=37.8

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+.+++..+.+ +-+-++|+.|+||||+|+.+-...
T Consensus        16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L   62 (605)
T PRK05896         16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI   62 (605)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999998876544 467789999999999999986543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.78  E-value=0.0013  Score=53.21  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.|..-
T Consensus        63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         63 LSKYVTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999999873

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=96.78  E-value=0.0013  Score=53.61  Aligned_cols=27  Identities=33%  Similarity=0.624  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+.+-.
T Consensus        26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~   52 (301)
T TIGR03522        26 QKGRIVGFLGPNGAGKSTTMKIITGYL   52 (301)
T ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998753

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.78  E-value=0.0014  Score=51.87  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.|..-
T Consensus        29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~   54 (251)
T PRK14244         29 YKREVTAFIGPSGCGKSTFLRCFNRM   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            46789999999999999999999864

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=96.78  E-value=0.0013  Score=52.63  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+..-
T Consensus        49 ~~Ge~~~I~G~nGsGKSTLl~~laGl   74 (272)
T PRK14236         49 PKNRVTAFIGPSGCGKSTLLRCFNRM   74 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            47889999999999999999999765

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.78  E-value=0.0022  Score=55.50  Aligned_cols=44  Identities=27%  Similarity=0.322  Sum_probs=36.6

Q ss_pred             ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .+++|.+..++.|.+.+..+.+. -+=++|+.|+||||+|+.+-.
T Consensus        13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk   57 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL   57 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence            56899999999888888766654 688999999999999988754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.78  E-value=0.0013  Score=53.21  Aligned_cols=27  Identities=26%  Similarity=0.477  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~   57 (286)
T PRK13646         31 EQGKYYAIVGQTGSGKSTLIQNINALL   57 (286)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.77  E-value=0.0013  Score=53.21  Aligned_cols=27  Identities=37%  Similarity=0.607  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~   57 (287)
T PRK13637         31 EDGEFVGLIGHTGSGKSTLIQHLNGLL   57 (287)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            477899999999999999999998753

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.77  E-value=0.0013  Score=52.78  Aligned_cols=27  Identities=37%  Similarity=0.444  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|..-.
T Consensus        45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   71 (276)
T PRK14271         45 PARAVTSLMGPTGSGKTTFLRTLNRMN   71 (276)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            477899999999999999999998754

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.77  E-value=0.0014  Score=50.09  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+..-.
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            478899999999999999999998854

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=96.77  E-value=0.0014  Score=51.43  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (237)
T TIGR00968        24 PTGSLVALLGPSGSGKSTLLRIIAGLE   50 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999999998754

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.76  E-value=0.0014  Score=52.23  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   57 (261)
T PRK14258         31 YQSKVTAIIGPSGCGKSTFLKCLNRMN   57 (261)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            478899999999999999999998864

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=96.76  E-value=0.0013  Score=52.54  Aligned_cols=27  Identities=30%  Similarity=0.343  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.|..-.
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   62 (268)
T PRK10419         36 KSGETVALLGRSGCGKSTLARLLVGLE   62 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=96.75  E-value=0.0013  Score=54.66  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|.+-.
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~   48 (352)
T PRK11144         22 PAQGITAIFGRSGAGKTSLINAISGLT   48 (352)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998753

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.75  E-value=0.0027  Score=47.82  Aligned_cols=27  Identities=33%  Similarity=0.397  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....++-++|++|.|||||.+.||...
T Consensus        26 ~~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          26 PKGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence            477899999999999999999999987

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=96.74  E-value=0.0014  Score=54.30  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++++|++|.|||||.+.+.+-.
T Consensus        65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~   91 (340)
T PRK13536         65 ASGECFGLLGPNGAGKSTIARMILGMT   91 (340)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999999998754

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=96.74  E-value=0.0014  Score=54.60  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|.|||||++.|..-.
T Consensus        22 ~Gei~~l~G~nGsGKSTLl~~iaGl~   47 (354)
T TIGR02142        22 GQGVTAIFGRSGSGKTTLIRLIAGLT   47 (354)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56899999999999999999998754

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=96.74  E-value=0.0014  Score=53.95  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~   65 (327)
T PRK11308         39 ERGKTLAVVGESGCGKSTLARLLTMIE   65 (327)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            467899999999999999999998754

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.74  E-value=0.0024  Score=55.72  Aligned_cols=46  Identities=22%  Similarity=0.304  Sum_probs=38.4

Q ss_pred             ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+..|.+++..+.+. .+=++|+.|+||||+|+.+-...
T Consensus        16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l   62 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL   62 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            56899999999999999876654 46789999999999999876643

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.73  E-value=0.0038  Score=43.85  Aligned_cols=44  Identities=16%  Similarity=0.247  Sum_probs=33.1

Q ss_pred             cccchHHHHHHHHHhhcc-------CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          153 ETVGFDSMLDEVWGHIAD-------YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~-------~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .++|.+-..+.+++.+.+       +++-|++..|..|+|||.+++.|-+.
T Consensus        26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~   76 (127)
T PF06309_consen   26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH   76 (127)
T ss_pred             HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence            456766666666666542       46789999999999999988887655

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.73  E-value=0.0015  Score=52.66  Aligned_cols=27  Identities=37%  Similarity=0.572  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~   57 (279)
T PRK13635         31 YEGEWVAIVGHNGSGKSTLAKLLNGLL   57 (279)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999999998754

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.73  E-value=0.0015  Score=52.09  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +...+++|+|.+|.|||||++.+.+.
T Consensus        40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   65 (265)
T PRK14252         40 HEKQVTALIGPSGCGKSTFLRCFNRM   65 (265)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            47889999999999999999999864

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.73  E-value=0.0015  Score=49.79  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|.|||||++.+...
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999999999886

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.73  E-value=0.0028  Score=56.46  Aligned_cols=46  Identities=26%  Similarity=0.305  Sum_probs=38.4

Q ss_pred             cccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      -.+++|.+..+..|..++..++ ...+-++|+.|+||||+|+.+-+.
T Consensus        14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~   60 (702)
T PRK14960         14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKC   60 (702)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999998665 456688999999999999988654

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=96.73  E-value=0.0014  Score=53.46  Aligned_cols=27  Identities=33%  Similarity=0.545  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~   57 (305)
T PRK13651         31 NQGEFIAIIGQTGSGKTTFIEHLNALL   57 (305)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.72  E-value=0.0015  Score=53.71  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~   76 (320)
T PRK13631         50 EKNKIYFIIGNSGSGKSTLVTHFNGLI   76 (320)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999998754

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=96.72  E-value=0.0027  Score=52.38  Aligned_cols=46  Identities=22%  Similarity=0.245  Sum_probs=36.9

Q ss_pred             ccccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          150 VMEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       150 ~~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      +-+.++|.+..+..++-.+.+.+..-+-+.|..|+||||||+.+-+
T Consensus         6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~   51 (334)
T PRK13407          6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAA   51 (334)
T ss_pred             CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence            3456889999888887666555666788999999999999999844

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.71  E-value=0.0016  Score=52.64  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   89 (285)
T PRK14254         63 PENQVTAMIGPSGCGKSTFLRCINRMN   89 (285)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            477899999999999999999998653

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.71  E-value=0.0033  Score=51.77  Aligned_cols=36  Identities=28%  Similarity=0.487  Sum_probs=27.9

Q ss_pred             HHHHHhhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          162 DEVWGHIA--DYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       162 ~~l~~~L~--~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++..+.  ..+..+|+|.|.+|+|||||+..+....
T Consensus        43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            44555443  2567899999999999999999987655

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.71  E-value=0.0015  Score=55.19  Aligned_cols=27  Identities=37%  Similarity=0.607  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .-.+.|+|+|..|+|||||++.+....
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999998764

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.70  E-value=0.0016  Score=52.58  Aligned_cols=27  Identities=30%  Similarity=0.546  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~   56 (283)
T PRK13636         30 KKGEVTAILGGNGAGKSTLFQNLNGIL   56 (283)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998753

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.70  E-value=0.0028  Score=56.35  Aligned_cols=46  Identities=26%  Similarity=0.338  Sum_probs=38.6

Q ss_pred             ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|.+++..+++. .+-++|..|+||||||+.+-+..
T Consensus        16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL   62 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL   62 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            56899999999999999876654 56789999999999999886644

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=96.70  E-value=0.0013  Score=55.68  Aligned_cols=26  Identities=38%  Similarity=0.664  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...||+|+|++|+||||+++.+-.-.
T Consensus       366 ~gEvigilGpNgiGKTTFvk~LAG~i  391 (591)
T COG1245         366 DGEVIGILGPNGIGKTTFVKLLAGVI  391 (591)
T ss_pred             cceEEEEECCCCcchHHHHHHHhccc
Confidence            57899999999999999999998643

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.70  E-value=0.0042  Score=48.97  Aligned_cols=38  Identities=29%  Similarity=0.453  Sum_probs=28.5

Q ss_pred             HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++..|..  .+..+|||.|++|+||+||+..+-...
T Consensus        14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            45566666654  467899999999999999999987665

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.70  E-value=0.0015  Score=52.78  Aligned_cols=27  Identities=37%  Similarity=0.517  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~   56 (288)
T PRK13643         30 KKGSYTALIGHTGSGKSTLLQHLNGLL   56 (288)
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            477899999999999999999998754

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=96.69  E-value=0.0027  Score=47.21  Aligned_cols=43  Identities=16%  Similarity=0.211  Sum_probs=29.4

Q ss_pred             cchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +|....+.++.+.+..  ....-|-|+|..|+||+.+|+.|++..
T Consensus         2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s   46 (168)
T PF00158_consen    2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS   46 (168)
T ss_dssp             S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence            4555566666665543  233455599999999999999999864

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK09087 hypothetical protein; Validated

Probab=96.69  E-value=0.0052  Score=47.91  Aligned_cols=26  Identities=31%  Similarity=0.296  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .-..+.|||+.|+|||+|++.+.+..
T Consensus        43 ~~~~l~l~G~~GsGKThLl~~~~~~~   68 (226)
T PRK09087         43 PSPVVVLAGPVGSGKTHLASIWREKS   68 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence            34678999999999999999987653

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=96.69  E-value=0.0016  Score=54.63  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|..-.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~   53 (369)
T PRK11000         27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (369)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=96.68  E-value=0.0015  Score=57.02  Aligned_cols=27  Identities=37%  Similarity=0.721  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~   54 (501)
T PRK10762         28 YPGRVMALVGENGAGKSTMMKVLTGIY   54 (501)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.68  E-value=0.0017  Score=49.29  Aligned_cols=26  Identities=31%  Similarity=0.524  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +...+++|.|++|.|||||++.+.+-
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl   58 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGR   58 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999774

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PLN02200 adenylate kinase family protein

Probab=96.68  E-value=0.0021  Score=50.41  Aligned_cols=26  Identities=31%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.+|.|.|++|+||||+++.+....
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999997654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.67  E-value=0.0016  Score=51.47  Aligned_cols=27  Identities=30%  Similarity=0.341  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..++|+||.+|.|||||++.|..=.
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~   63 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLE   63 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCc
Confidence            478999999999999999999997643

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.67  E-value=0.0033  Score=54.72  Aligned_cols=46  Identities=28%  Similarity=0.259  Sum_probs=38.0

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+..|...+..++. .-+=++|+.|+||||+|+.+.+..
T Consensus        21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L   67 (507)
T PRK06645         21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV   67 (507)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999988887765543 577789999999999999997754

>PRK13409 putative ATPase RIL; Provisional

Probab=96.67  E-value=0.0015  Score=57.99  Aligned_cols=27  Identities=33%  Similarity=0.618  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+..
T Consensus        97 ~~Gev~gLvG~NGaGKSTLlkiL~G~l  123 (590)
T PRK13409         97 KEGKVTGILGPNGIGKTTAVKILSGEL  123 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998754

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.67  E-value=0.0029  Score=56.28  Aligned_cols=44  Identities=27%  Similarity=0.384  Sum_probs=36.9

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ++++|.+..+..|.+++..+.+ ..+-++|+.|+||||+|+.+-+
T Consensus        16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk   60 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK   60 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999887665 5668899999999999999843

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.66  E-value=0.0019  Score=50.80  Aligned_cols=26  Identities=38%  Similarity=0.437  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +....+.++|++|+||||+.++|+.=
T Consensus        25 ~~gef~vliGpSGsGKTTtLkMINrL   50 (309)
T COG1125          25 EEGEFLVLIGPSGSGKTTTLKMINRL   50 (309)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhcc
Confidence            46788999999999999999999763

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=96.66  E-value=0.0018  Score=50.52  Aligned_cols=27  Identities=33%  Similarity=0.393  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~   50 (232)
T cd03300          24 KEGEFFTLLGPSGCGKTTLLRLIAGFE   50 (232)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999999998865

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.66  E-value=0.0036  Score=52.38  Aligned_cols=46  Identities=26%  Similarity=0.403  Sum_probs=38.6

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+...+.+..++.++.. ..+-++|+.|+||||+|+.+-+..
T Consensus        17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l   63 (367)
T PRK14970         17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI   63 (367)
T ss_pred             HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999876554 478899999999999999986643

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=96.66  E-value=0.0018  Score=50.44  Aligned_cols=27  Identities=37%  Similarity=0.724  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+...+||+|.+|.|||||.+.|.+-.
T Consensus        51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~   77 (249)
T COG1134          51 YKGERVGIIGHNGAGKSTLLKLIAGIY   77 (249)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence            377899999999999999999998754

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.66  E-value=0.0018  Score=52.84  Aligned_cols=27  Identities=33%  Similarity=0.432  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+..
T Consensus        69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         69 PEKSVTALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            478899999999999999999998753

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=96.66  E-value=0.0017  Score=52.22  Aligned_cols=27  Identities=26%  Similarity=0.469  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||.+.+.+-.
T Consensus        34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   60 (280)
T PRK13633         34 KKGEFLVILGRNGSGKSTIAKHMNALL   60 (280)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=96.66  E-value=0.0016  Score=56.93  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~   61 (510)
T PRK15439         35 HAGEVHALLGGNGAGKSTLMKIIAGIV   61 (510)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=96.66  E-value=0.0017  Score=53.65  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~   66 (330)
T PRK09473         40 RAGETLGIVGESGSGKSQTAFALMGLL   66 (330)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            467899999999999999999998754

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=96.65  E-value=0.0019  Score=51.91  Aligned_cols=27  Identities=33%  Similarity=0.463  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|++-.
T Consensus        28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~   54 (275)
T cd03289          28 SPGQRVGLLGRTGSGKSTLLSAFLRLL   54 (275)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence            477899999999999999999998765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=96.65  E-value=0.0019  Score=50.00  Aligned_cols=27  Identities=37%  Similarity=0.370  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        29 ~~G~~~~I~G~nGsGKStLl~~l~G~~   55 (220)
T TIGR02982        29 NPGEIVILTGPSGSGKTTLLTLIGGLR   55 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=96.65  E-value=0.0018  Score=53.50  Aligned_cols=27  Identities=26%  Similarity=0.523  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~   71 (331)
T PRK15079         45 YEGETLGVVGESGCGKSTFARAIIGLV   71 (331)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            478899999999999999999998754

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.64  E-value=0.0019  Score=51.04  Aligned_cols=27  Identities=37%  Similarity=0.511  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|..-.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249         28 PERQITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999998754

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=96.64  E-value=0.0017  Score=57.05  Aligned_cols=27  Identities=33%  Similarity=0.493  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+..
T Consensus        25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~   51 (530)
T PRK15064         25 GGGNRYGLIGANGCGKSTFMKILGGDL   51 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.64  E-value=0.0018  Score=53.56  Aligned_cols=25  Identities=36%  Similarity=0.587  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....++++.|++|+|||||.+.|-.
T Consensus        29 ~~Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          29 KKGEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3668999999999999999999965

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=96.63  E-value=0.0017  Score=56.48  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.+.+-.
T Consensus        27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~   53 (490)
T PRK10938         27 NAGDSWAFVGANGSGKSALARALAGEL   53 (490)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999998753

>PRK06620 hypothetical protein; Validated

Probab=96.63  E-value=0.0018  Score=50.09  Aligned_cols=24  Identities=29%  Similarity=0.171  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+-|+|+.|+|||+|++.+.+..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~   68 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLS   68 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhcc
Confidence            668999999999999999987653

>cd01878 HflX HflX subfamily

Probab=96.63  E-value=0.002  Score=49.09  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....|+|+|.+|+|||||.+.+.+..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence            356789999999999999999998763

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=96.63  E-value=0.0016  Score=56.72  Aligned_cols=27  Identities=37%  Similarity=0.608  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        25 ~~Ge~~~liG~nGsGKSTLl~~i~G~~   51 (500)
T TIGR02633        25 RPGECVGLCGENGAGKSTLMKILSGVY   51 (500)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=96.63  E-value=0.0021  Score=51.32  Aligned_cols=27  Identities=44%  Similarity=0.660  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .....++|+|..|+|||||++.+++..
T Consensus        67 g~GQr~~If~~~G~GKTtLa~~i~~~i   93 (274)
T cd01133          67 AKGGKIGLFGGAGVGKTVLIMELINNI   93 (274)
T ss_pred             ccCCEEEEecCCCCChhHHHHHHHHHH
Confidence            367889999999999999999999976

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=96.63  E-value=0.0018  Score=56.70  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|+|||||++.+..-
T Consensus        24 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl   49 (520)
T TIGR03269        24 EEGEVLGILGRSGAGKSVLMHVLRGM   49 (520)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            36789999999999999999999885

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.63  E-value=0.002  Score=51.37  Aligned_cols=27  Identities=37%  Similarity=0.591  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (261)
T PRK14263         32 RKNEITGFIGPSGCGKSTVLRSLNRMN   58 (261)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence            477899999999999999999997643

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.63  E-value=0.0019  Score=52.32  Aligned_cols=27  Identities=33%  Similarity=0.500  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+..-.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (290)
T PRK13634         31 PSGSYVAIIGHTGSGKSTLLQHLNGLL   57 (290)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999999998754

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.62  E-value=0.0017  Score=54.85  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~   78 (400)
T PRK10070         52 EEGEIFVIMGLSGSGKSTMVRLLNRLI   78 (400)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            467899999999999999999998754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=96.62  E-value=0.0016  Score=56.78  Aligned_cols=27  Identities=33%  Similarity=0.621  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus       286 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~  312 (506)
T PRK13549        286 RRGEILGIAGLVGAGRTELVQCLFGAY  312 (506)
T ss_pred             cCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.61  E-value=0.0027  Score=38.82  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 041747          174 RIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      .+..|.|.+|+|||||.-++.
T Consensus        24 ~~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999997753

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.61  E-value=0.0022  Score=54.08  Aligned_cols=26  Identities=38%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+-+|||.|..|+|||||++.|..-.
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL  236 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLF  236 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999996544

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.61  E-value=0.0044  Score=45.00  Aligned_cols=37  Identities=30%  Similarity=0.564  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccE--EEEe
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDL--VIWV  210 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~--~~wv  210 (211)
                      .+..|+++.|++|.||+||..-+-...   ...|+|  .+|+
T Consensus        26 a~GeivtlMGPSGcGKSTLls~~~G~L---a~~F~~~G~~~l   64 (213)
T COG4136          26 AKGEIVTLMGPSGCGKSTLLSWMIGAL---AGQFSCTGELWL   64 (213)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhhc---ccCcceeeEEEE
Confidence            367899999999999999999998877   566776  6775

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=96.60  E-value=0.0018  Score=57.16  Aligned_cols=27  Identities=33%  Similarity=0.587  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||.+.|.+..
T Consensus        31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~   57 (556)
T PRK11819         31 FPGAKIGVLGLNGAGKSTLLRIMAGVD   57 (556)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999999864

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=96.60  E-value=0.002  Score=53.70  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|.+-.
T Consensus        26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~   52 (353)
T PRK10851         26 PSGQMVALLGPSGSGKTTLLRIIAGLE   52 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998854

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=96.60  E-value=0.0018  Score=56.57  Aligned_cols=27  Identities=37%  Similarity=0.603  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (506)
T PRK13549         29 RAGEIVSLCGENGAGKSTLMKVLSGVY   55 (506)
T ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=96.60  E-value=0.0018  Score=58.19  Aligned_cols=27  Identities=41%  Similarity=0.609  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|.+..
T Consensus        25 ~~Ge~v~LvG~NGsGKSTLLkiL~G~~   51 (638)
T PRK10636         25 NPGQKVGLVGKNGCGKSTLLALLKNEI   51 (638)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999999864

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.60  E-value=0.0032  Score=56.05  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=37.1

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+++|.+..+..|.+++..+.+ .-+-++|+.|+||||+|..+-+.
T Consensus        16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~   61 (620)
T PRK14954         16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKA   61 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHH
Confidence            5688999999999998876555 44889999999999999877554

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=96.60  E-value=0.0018  Score=56.86  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        33 ~~Ge~~~iiG~nGsGKSTLl~~i~G~~   59 (529)
T PRK15134         33 EAGETLALVGESGSGKSVTALSILRLL   59 (529)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999999998754

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=96.60  E-value=0.0039  Score=57.13  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=38.1

Q ss_pred             ccccchHHHHHHHHHhhcc----C-CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD----Y-RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~-~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.+.||+.+.+.|...|.+    . ...++-|+|++|+|||+.++.|.+..
T Consensus       755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL  805 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL  805 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3467999999999998864    2 23578899999999999999998764

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=96.60  E-value=0.0032  Score=48.95  Aligned_cols=45  Identities=20%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             cccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ..++||.++.++.+--...+.+..-+-|-||+|+||||=+..+..
T Consensus        26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr   70 (333)
T KOG0991|consen   26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAR   70 (333)
T ss_pred             HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHH
Confidence            456899999999998888888888888999999999996555543

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.58  E-value=0.0045  Score=47.33  Aligned_cols=42  Identities=26%  Similarity=0.266  Sum_probs=30.9

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ++++|.+..+.-|.-...  +..=+-++|+.|+|||+||+.+-.
T Consensus         3 ~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~   44 (206)
T PF01078_consen    3 SDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPS   44 (206)
T ss_dssp             CCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHH
T ss_pred             hhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHH
Confidence            457888877776665555  567889999999999999999854

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=96.58  E-value=0.0022  Score=50.19  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~   49 (235)
T cd03299          23 ERGDYFVILGPTGSGKSVLLETIAGFI   49 (235)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            367899999999999999999998754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.58  E-value=0.0063  Score=50.87  Aligned_cols=27  Identities=52%  Similarity=0.623  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.++|.++|+.|+||||++..+....
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l  230 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQL  230 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999987654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=96.57  E-value=0.0019  Score=56.49  Aligned_cols=27  Identities=33%  Similarity=0.484  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus       287 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~  313 (510)
T PRK09700        287 CRGEILGFAGLVGSGRTELMNCLFGVD  313 (510)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=96.57  E-value=0.0046  Score=51.31  Aligned_cols=46  Identities=20%  Similarity=0.355  Sum_probs=37.9

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+..++..... ..+=++|+.|+||||+|+.+....
T Consensus        14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l   60 (355)
T TIGR02397        14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL   60 (355)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999876554 467789999999999998886553

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=96.57  E-value=0.0023  Score=50.80  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+..
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (257)
T cd03288          45 KPGQKVGICGRTGSGKSSLSLAFFRMV   71 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence            467899999999999999999998753

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=96.57  E-value=0.002  Score=56.59  Aligned_cols=27  Identities=37%  Similarity=0.537  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|.+-.
T Consensus       343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~  369 (530)
T PRK15064        343 EAGERLAIIGENGVGKTTLLRTLVGEL  369 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.56  E-value=0.0022  Score=51.50  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+-.
T Consensus        31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   57 (277)
T PRK13642         31 TKGEWVSIIGQNGSGKSTTARLIDGLF   57 (277)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999999998754

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.56  E-value=0.0023  Score=49.82  Aligned_cols=27  Identities=33%  Similarity=0.503  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+.+|+|.+|+|||||.+.|-.-.
T Consensus        32 ~~Gei~~iiGgSGsGKStlLr~I~Gll   58 (263)
T COG1127          32 PRGEILAILGGSGSGKSTLLRLILGLL   58 (263)
T ss_pred             cCCcEEEEECCCCcCHHHHHHHHhccC
Confidence            478899999999999999999997643

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=96.56  E-value=0.0022  Score=53.52  Aligned_cols=27  Identities=33%  Similarity=0.378  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||.+.|..-.
T Consensus        28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~   54 (356)
T PRK11650         28 ADGEFIVLVGPSGCGKSTLLRMVAGLE   54 (356)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            467899999999999999999998754

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=96.55  E-value=0.0019  Score=56.38  Aligned_cols=27  Identities=41%  Similarity=0.591  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        29 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   55 (510)
T PRK09700         29 YPGEIHALLGENGAGKSTLMKVLSGIH   55 (510)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence            478899999999999999999998754

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.55  E-value=0.0013  Score=48.94  Aligned_cols=26  Identities=38%  Similarity=0.687  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...|++|||-+|+|||||.+.|-.+.
T Consensus        31 PGeVLgiVGESGSGKtTLL~~is~rl   56 (258)
T COG4107          31 PGEVLGIVGESGSGKTTLLKCISGRL   56 (258)
T ss_pred             CCcEEEEEecCCCcHHhHHHHHhccc
Confidence            67899999999999999999997754

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.55  E-value=0.0046  Score=50.53  Aligned_cols=27  Identities=41%  Similarity=0.597  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....|.++|+.|+||||+++.+....
T Consensus       131 ~~~~~I~l~G~~GsGKStvg~~La~~L  157 (309)
T PRK08154        131 ARRRRIALIGLRGAGKSTLGRMLAARL  157 (309)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            467799999999999999999997654

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.55  E-value=0.0067  Score=52.88  Aligned_cols=46  Identities=24%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             ccccchHHHHHHHHHhhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA---D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++++...+.   +         ...+=+-++|++|+|||+||+.+.+..
T Consensus        55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~  112 (495)
T TIGR01241        55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA  112 (495)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence            457787766665554432   2         123447789999999999999998764

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.55  E-value=0.0037  Score=50.89  Aligned_cols=27  Identities=33%  Similarity=0.553  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|+|+|++|+|||||+..+....
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            568999999999999999999987654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.54  E-value=0.0023  Score=52.64  Aligned_cols=26  Identities=31%  Similarity=0.451  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....+.++|++|+|||||.+.|-.=
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999763

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.54  E-value=0.0043  Score=54.90  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|..++..+.+. .+-++|+.|+||||+|+.+-+..
T Consensus        13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l   59 (584)
T PRK14952         13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL   59 (584)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            56899999999999999876654 46789999999999999887643

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=96.54  E-value=0.0023  Score=53.21  Aligned_cols=27  Identities=30%  Similarity=0.418  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|.+-.
T Consensus        30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~   56 (351)
T PRK11432         30 KQGTMVTLLGPSGCGKTTVLRLVAGLE   56 (351)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            467899999999999999999998754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=96.54  E-value=0.0021  Score=57.72  Aligned_cols=27  Identities=41%  Similarity=0.597  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|.+..
T Consensus       336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~  362 (638)
T PRK10636        336 VPGSRIGLLGRNGAGKSTLIKLLAGEL  362 (638)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999999864

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=96.54  E-value=0.0019  Score=56.43  Aligned_cols=27  Identities=33%  Similarity=0.468  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|.+-.
T Consensus       287 ~~Ge~~~l~G~NGsGKSTLl~~i~Gl~  313 (510)
T PRK15439        287 RAGEILGLAGVVGAGRTELAETLYGLR  313 (510)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999998753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=96.53  E-value=0.0022  Score=57.49  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|..-.
T Consensus        40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll   66 (623)
T PRK10261         40 QRGETLAIVGESGSGKSVTALALMRLL   66 (623)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            467899999999999999999998754

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=96.53  E-value=0.002  Score=57.80  Aligned_cols=27  Identities=37%  Similarity=0.491  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|.+..
T Consensus        27 ~~Ge~v~LvG~NGsGKSTLLriiaG~~   53 (635)
T PRK11147         27 EDNERVCLVGRNGAGKSTLMKILNGEV   53 (635)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999998854

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.53  E-value=0.0038  Score=54.75  Aligned_cols=45  Identities=29%  Similarity=0.381  Sum_probs=37.5

Q ss_pred             ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+++|.+..++.|..++..+++. .+-++|+.|+||||+|+.+-..
T Consensus        16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~   61 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKS   61 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999998876654 4578999999999999988654

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=96.53  E-value=0.0023  Score=48.89  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHH
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      -+++.|.|++|.|||||.+.|.
T Consensus        28 ~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          28 KRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ceEEEEECCCCCChHHHHHHHH
Confidence            3799999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.53  E-value=0.0022  Score=56.27  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++...++|+|+.|.|||||++.+.+-.
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            588999999999999999999997654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK13409 putative ATPase RIL; Provisional

Probab=96.53  E-value=0.0022  Score=56.98  Aligned_cols=27  Identities=41%  Similarity=0.706  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+....
T Consensus       363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~  389 (590)
T PRK13409        363 YEGEVIGIVGPNGIGKTTFAKLLAGVL  389 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=96.52  E-value=0.0021  Score=57.66  Aligned_cols=27  Identities=44%  Similarity=0.556  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|.+..
T Consensus       343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~  369 (635)
T PRK11147        343 QRGDKIALIGPNGCGKTTLLKLMLGQL  369 (635)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999999864

>PRK14974 cell division protein FtsY; Provisional

Probab=96.52  E-value=0.0029  Score=52.18  Aligned_cols=26  Identities=35%  Similarity=0.517  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++.+|.++|++|+||||++..+....
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999888887654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=96.52  E-value=0.0022  Score=56.30  Aligned_cols=27  Identities=30%  Similarity=0.287  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus       310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~  336 (529)
T PRK15134        310 RPGETLGLVGESGSGKSTTGLALLRLI  336 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            467899999999999999999998753

>PRK06851 hypothetical protein; Provisional

Probab=96.51  E-value=0.14  Score=42.77  Aligned_cols=39  Identities=26%  Similarity=0.224  Sum_probs=30.3

Q ss_pred             cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -|.-+-.+.++    ++--+++-|-|.+|+|||||++.+....
T Consensus       200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a  238 (367)
T PRK06851        200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA  238 (367)
T ss_pred             CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH
Confidence            35555555554    3456789999999999999999999876

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=96.51  E-value=0.0022  Score=56.63  Aligned_cols=27  Identities=33%  Similarity=0.529  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+..
T Consensus       348 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~  374 (556)
T PRK11819        348 PPGGIVGIIGPNGAGKSTLFKMITGQE  374 (556)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=96.51  E-value=0.0021  Score=56.74  Aligned_cols=27  Identities=30%  Similarity=0.511  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+..
T Consensus       346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~  372 (552)
T TIGR03719       346 PPGGIVGVIGPNGAGKSTLFRMITGQE  372 (552)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            477899999999999999999998754

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.51  E-value=0.0036  Score=54.39  Aligned_cols=46  Identities=26%  Similarity=0.398  Sum_probs=35.7

Q ss_pred             ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.|.+..++++...+.-             ..++-+-++|++|+|||++|+.+++..
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL  240 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL  240 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence            3466788888887776531             245568899999999999999999875

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.50  E-value=0.0044  Score=55.53  Aligned_cols=45  Identities=27%  Similarity=0.384  Sum_probs=38.2

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+++|.+..+..|..++..+++ .-+-++|+.|+||||+|+.+-+.
T Consensus        16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~   61 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS   61 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            5689999999999999887664 46788999999999999987654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=96.49  E-value=0.0022  Score=55.71  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|.|||||++.+.+.
T Consensus       284 ~~Ge~~~i~G~NGsGKSTLl~~l~G~  309 (490)
T PRK10938        284 NPGEHWQIVGPNGAGKSTLLSLITGD  309 (490)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            46789999999999999999999874

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=96.49  E-value=0.002  Score=55.98  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.++.-.
T Consensus       272 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  298 (491)
T PRK10982        272 HKGEILGIAGLVGAKRTDIVETLFGIR  298 (491)
T ss_pred             eCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999998753

>cd01858 NGP_1 NGP-1

Probab=96.49  E-value=0.0056  Score=44.73  Aligned_cols=26  Identities=27%  Similarity=0.508  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|+++|++|+||+||.+.+.++.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~  126 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKK  126 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCC
Confidence            34568899999999999999998754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=96.49  E-value=0.0055  Score=46.25  Aligned_cols=41  Identities=22%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .|.+.-.+.|...+.  ....+.++|.+|+|||||.+.+.+..
T Consensus       111 ~gi~eL~~~l~~~l~--~~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         111 WGVEELINAIKKLAK--KGGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CCHHHHHHHHHHHhh--cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            355666666666553  44678999999999999999998753

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=96.49  E-value=0.0023  Score=55.82  Aligned_cols=27  Identities=37%  Similarity=0.586  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        28 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   54 (501)
T PRK11288         28 RAGQVHALMGENGAGKSTLLKILSGNY   54 (501)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.49  E-value=0.0048  Score=55.77  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=37.1

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ++++|.+..++.|.+++..+++ +.+-++|..|+||||+++.+-+.
T Consensus        16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKa   61 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKA   61 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999886654 45568999999999999876554

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.49  E-value=0.0025  Score=50.38  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 041747          174 RIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      .+..|+|++|+|||||+.+|+
T Consensus        23 ~~~~i~G~NGsGKStll~ai~   43 (247)
T cd03275          23 RFTCIIGPNGSGKSNLMDAIS   43 (247)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999987

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.48  E-value=0.0063  Score=42.70  Aligned_cols=27  Identities=33%  Similarity=0.377  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++..||...|.=|.|||||+|.+....
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            377899999999999999999998765

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=96.48  E-value=0.0023  Score=55.76  Aligned_cols=27  Identities=33%  Similarity=0.615  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus       276 ~~Ge~~~liG~NGsGKSTLl~~l~G~~  302 (501)
T PRK10762        276 RKGEILGVSGLMGAGRTELMKVLYGAL  302 (501)
T ss_pred             cCCcEEEEecCCCCCHHHHHHHHhCCC
Confidence            466899999999999999999998753

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.0027  Score=49.11  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+-+|.|++|.||+||+..|-.++
T Consensus        28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p   54 (251)
T COG0396          28 KEGEVHAIMGPNGSGKSTLAYTIMGHP   54 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            577899999999999999999998765

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=96.48  E-value=0.0023  Score=55.64  Aligned_cols=26  Identities=42%  Similarity=0.529  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.+.+-.
T Consensus        23 ~Ge~~~liG~nGsGKSTLl~~l~Gl~   48 (491)
T PRK10982         23 PHSIHALMGENGAGKSTLLKCLFGIY   48 (491)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            67899999999999999999998753

>PRK12377 putative replication protein; Provisional

Probab=96.48  E-value=0.0058  Score=48.33  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..-+-++|..|+|||+||..|.+..
T Consensus       100 ~~~~l~l~G~~GtGKThLa~AIa~~l  125 (248)
T PRK12377        100 GCTNFVFSGKPGTGKNHLAAAIGNRL  125 (248)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999986

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.47  E-value=0.0043  Score=52.94  Aligned_cols=26  Identities=42%  Similarity=0.673  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.+++.++|++|+||||++..+....
T Consensus       220 ~~~~i~~vGptGvGKTTt~~kLA~~~  245 (424)
T PRK05703        220 QGGVVALVGPTGVGKTTTLAKLAARY  245 (424)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35699999999999999998886654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=96.47  E-value=0.0022  Score=55.95  Aligned_cols=27  Identities=33%  Similarity=0.625  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+....
T Consensus       277 ~~Ge~~~iiG~NGsGKSTLlk~l~G~~  303 (501)
T PRK11288        277 RAGEIVGLFGLVGAGRSELMKLLYGAT  303 (501)
T ss_pred             eCCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999998753

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.47  E-value=0.0042  Score=52.54  Aligned_cols=26  Identities=35%  Similarity=0.544  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.++|++|+||||++..+....
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999987643

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=96.47  E-value=0.0025  Score=56.23  Aligned_cols=27  Identities=33%  Similarity=0.587  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.|.+..
T Consensus        29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~   55 (552)
T TIGR03719        29 FPGAKIGVLGLNGAGKSTLLRIMAGVD   55 (552)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999999754

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=96.46  E-value=0.0028  Score=52.81  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||.+.|..-.
T Consensus        28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~   54 (353)
T TIGR03265        28 KKGEFVCLLGPSGCGKTTLLRIIAGLE   54 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            367899999999999999999998754

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=96.46  E-value=0.0026  Score=55.74  Aligned_cols=27  Identities=37%  Similarity=0.545  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus       308 ~~Ge~~~l~G~NGsGKSTLl~~l~Gl~  334 (520)
T TIGR03269       308 KEGEIFGIVGTSGAGKTTLSKIIAGVL  334 (520)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.46  E-value=0.0029  Score=50.30  Aligned_cols=27  Identities=44%  Similarity=0.614  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|.+..
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~iaG~~   60 (257)
T PRK14246         34 PNNSIFGIMGPSGSGKSTLLKVLNRLI   60 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998754

>PLN03073 ABC transporter F family; Provisional

Probab=96.45  E-value=0.0024  Score=58.06  Aligned_cols=26  Identities=38%  Similarity=0.480  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....++|+|.+|+|||||++.|...
T Consensus       201 ~~Ge~~gLvG~NGsGKSTLLr~l~g~  226 (718)
T PLN03073        201 AFGRHYGLVGRNGTGKTTFLRYMAMH  226 (718)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            46789999999999999999999863

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=96.45  E-value=0.0022  Score=50.03  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .-.--.|+|++|.|||||++.+..+.
T Consensus        56 ~ge~W~I~G~NGsGKTTLL~ll~~~~   81 (257)
T COG1119          56 PGEHWAIVGPNGAGKTTLLSLLTGEH   81 (257)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHhccc
Confidence            55678899999999999999998765

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.45  E-value=0.0048  Score=45.73  Aligned_cols=27  Identities=33%  Similarity=0.491  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....+.+.|++|+||+||.+.+|.++
T Consensus        35 ~aGECvvL~G~SG~GKStllr~LYaNY   61 (235)
T COG4778          35 NAGECVVLHGPSGSGKSTLLRSLYANY   61 (235)
T ss_pred             cCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence            466778899999999999999999987

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.45  E-value=0.0036  Score=47.17  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=23.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          170 DYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+.+.-|+|+|.+|+|||||++.+.+.
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~   47 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNR   47 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            346778999999999999999999874

>PRK09183 transposase/IS protein; Provisional

Probab=96.44  E-value=0.0031  Score=50.26  Aligned_cols=26  Identities=42%  Similarity=0.434  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+.|+|++|+|||+||..+....
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999996653

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=96.44  E-value=0.0057  Score=50.87  Aligned_cols=50  Identities=18%  Similarity=0.143  Sum_probs=39.8

Q ss_pred             CCccccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          148 GMVMEETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       148 ~~~~~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      |.....++|.+.....+...+....+ .-+-++|+.|+||||||..+-...
T Consensus        19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L   69 (351)
T PRK09112         19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI   69 (351)
T ss_pred             CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence            33345689999999999999876554 468889999999999999876654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=96.44  E-value=0.0027  Score=56.89  Aligned_cols=27  Identities=26%  Similarity=0.331  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.|..-.
T Consensus       348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~  374 (623)
T PRK10261        348 WPGETLSLVGESGSGKSTTGRALLRLV  374 (623)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999999998743

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.44  E-value=0.0063  Score=50.49  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .....|.|.|+.|+||||+++.+.+..
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i  146 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYI  146 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            345789999999999999999988754

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=96.43  E-value=0.0036  Score=53.66  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHH
Q 041747          171 YRCRIIGLYGIGGVGKTTLLK  191 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~  191 (211)
                      ....+++|+|+.|.|||||++
T Consensus        30 ~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        30 PSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             cCCCEEEEECCCCCCHHHHHh
Confidence            578999999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.43  E-value=0.0057  Score=50.41  Aligned_cols=46  Identities=26%  Similarity=0.385  Sum_probs=40.6

Q ss_pred             ccccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..++++++.+..      ..-+|+-++|+.|.|||||+..+-+-.
T Consensus        61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l  112 (358)
T PF08298_consen   61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL  112 (358)
T ss_pred             ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999874      467899999999999999999997755

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.43  E-value=0.0056  Score=54.71  Aligned_cols=46  Identities=28%  Similarity=0.341  Sum_probs=37.8

Q ss_pred             ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+..|...+..+.+. .+-++|+.|+||||+|+.+.+..
T Consensus        16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L   62 (647)
T PRK07994         16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL   62 (647)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            56899999999999988766654 35689999999999999986553

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.42  E-value=0.0031  Score=52.05  Aligned_cols=27  Identities=33%  Similarity=0.561  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+++..
T Consensus       106 ~~Ge~v~IvG~~GsGKSTLl~~L~g~~  132 (329)
T PRK14257        106 KRNKVTAFIGPSGCGKSTFLRNLNQLN  132 (329)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999999754

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.42  E-value=0.0027  Score=41.74  Aligned_cols=23  Identities=48%  Similarity=0.693  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++.+.|.+|+||||++..+....
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l   23 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAAL   23 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47889999999999999998765

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=96.42  E-value=0.0025  Score=55.52  Aligned_cols=27  Identities=33%  Similarity=0.639  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.+.+-.
T Consensus       284 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~  310 (500)
T TIGR02633       284 RRGEILGVAGLVGAGRTELVQALFGAY  310 (500)
T ss_pred             eCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=96.40  E-value=0.003  Score=53.02  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||.+.|..-.
T Consensus        38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~   64 (375)
T PRK09452         38 NNGEFLTLLGPSGCGKTTVLRLIAGFE   64 (375)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998754

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=96.40  E-value=0.034  Score=40.32  Aligned_cols=107  Identities=11%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             cchHh-hHhHHHHHhhhccchhhchhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHHHHHHHH
Q 041747            5 SPVLD-ILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDV   83 (211)
Q Consensus         5 ~~v~~-~~~~l~~~~~~~~~~~~~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~v~~~~~~~ed   83 (211)
                      +++.+ +++.|...+.+....-..++.-++.|...++.+...+..|+..-.+-+       ..-+.-++++.+...++++
T Consensus         8 gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld-------~~~~ee~e~L~~~L~~g~~   80 (147)
T PF05659_consen    8 GAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELD-------RPRQEEIERLKELLEKGKE   80 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcC-------CchhHHHHHHHHHHHHHHH
Confidence            44444 677788888888888888999999999999999999999876542221       2225556778888888888


Q ss_pred             HhHhhHHHHhchhcCCcccCCccchhhhHHHHHHHHHHHHHHHH
Q 041747           84 ISRKGEQEVQKKCLGSCCIYNCYSGYKIGKKVINKIRDVKELIK  127 (211)
Q Consensus        84 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~  127 (211)
                      ++..|..-.         -.++..+++.+++++++.+.+.....
T Consensus        81 LV~k~sk~~---------r~n~~kk~~y~~Ki~~le~~l~~f~~  115 (147)
T PF05659_consen   81 LVEKCSKVR---------RWNLYKKPRYARKIEELEESLRRFIQ  115 (147)
T ss_pred             HHHHhcccc---------HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence            887653211         01334456678888888877776543

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PRK00098 GTPase RsgA; Reviewed

Probab=96.39  E-value=0.0043  Score=50.48  Aligned_cols=34  Identities=41%  Similarity=0.556  Sum_probs=27.1

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++.|...|.   .++++++|.+|+|||||.+.+.+..
T Consensus       155 i~~L~~~l~---gk~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        155 LDELKPLLA---GKVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             HHHHHhhcc---CceEEEECCCCCCHHHHHHHHhCCc
Confidence            455666653   4689999999999999999998754

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=96.39  E-value=0.0028  Score=48.45  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ..++.|+|++|.|||||++.|..
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHH
Confidence            48999999999999999999983

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.38  E-value=0.0059  Score=49.04  Aligned_cols=37  Identities=27%  Similarity=0.518  Sum_probs=29.5

Q ss_pred             HHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+|+..|..  .+..+|||.|.+|+||+||.-.+-...
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            4556666654  467899999999999999999887665

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=96.38  E-value=0.0057  Score=54.37  Aligned_cols=47  Identities=26%  Similarity=0.415  Sum_probs=39.0

Q ss_pred             cccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -.+++|.+..++.|.+++..+++ .-+=++|+.|+||||+|+.+-+..
T Consensus        23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L   70 (598)
T PRK09111         23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL   70 (598)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999999999876654 467889999999999999986643

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.38  E-value=0.0062  Score=50.66  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +-+..++|||+.|.|||.+|+.|+++.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~el  172 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKM  172 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence            568899999999999999999999976

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.0038  Score=46.83  Aligned_cols=25  Identities=36%  Similarity=0.493  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .....+-|.|++|+|||||.+.|..
T Consensus        26 ~~Ge~~~i~G~NG~GKTtLLRilaG   50 (209)
T COG4133          26 NAGEALQITGPNGAGKTTLLRILAG   50 (209)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHc
Confidence            3567888999999999999999976

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=96.38  E-value=0.003  Score=54.81  Aligned_cols=27  Identities=33%  Similarity=0.492  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....++||||.+|+|||||++.|-+=.
T Consensus       315 ~~GE~lglVGeSGsGKSTlar~i~gL~  341 (539)
T COG1123         315 REGETLGLVGESGSGKSTLARILAGLL  341 (539)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999997643

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=96.37  E-value=0.0033  Score=53.24  Aligned_cols=27  Identities=41%  Similarity=0.705  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||.+.+..-.
T Consensus        27 ~~Geiv~liGpNGaGKSTLLk~LaGll   53 (402)
T PRK09536         27 REGSLVGLVGPNGAGKTTLLRAINGTL   53 (402)
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            477899999999999999999998754

>PLN03073 ABC transporter F family; Provisional

Probab=96.36  E-value=0.003  Score=57.36  Aligned_cols=27  Identities=30%  Similarity=0.476  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+..
T Consensus       533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll  559 (718)
T PLN03073        533 DLDSRIAMVGPNGIGKSTILKLISGEL  559 (718)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998753

>PRK05642 DNA replication initiation factor; Validated

Probab=96.36  E-value=0.0041  Score=48.76  Aligned_cols=25  Identities=36%  Similarity=0.608  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+-|+|..|+|||.|++.+.+..
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~   69 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRF   69 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3678999999999999999998764

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.35  E-value=0.0065  Score=49.05  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -+-++|++|+||||+|+.+....
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHH
Confidence            57789999999999997765543

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.35  E-value=0.0049  Score=49.85  Aligned_cols=34  Identities=35%  Similarity=0.476  Sum_probs=27.1

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.|...|.   .++++++|++|+|||||++.+.+..
T Consensus       152 i~~L~~~L~---~k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         152 LDELREYLK---GKTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             HHHHHhhhc---cceEEEECCCCCCHHHHHHHHhchh
Confidence            455555664   2789999999999999999998754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.35  E-value=0.0056  Score=55.93  Aligned_cols=46  Identities=26%  Similarity=0.314  Sum_probs=35.6

Q ss_pred             ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++.|.+..++.+..++.-             ...+-|-++|++|+||||||+.+.+..
T Consensus       178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~  236 (733)
T TIGR01243       178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA  236 (733)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence            3467888888887766531             234668899999999999999998865

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=96.33  E-value=0.0033  Score=56.83  Aligned_cols=27  Identities=33%  Similarity=0.434  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....|+|+|.+|+|||||+|.+-+-.
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly  523 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLY  523 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            578899999999999999999986643

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=96.32  E-value=0.0038  Score=52.20  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||.+.|..-.
T Consensus        29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   55 (362)
T TIGR03258        29 EAGELLALIGKSGCGKTTLLRAIAGFV   55 (362)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467799999999999999999998754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.32  E-value=0.0073  Score=51.08  Aligned_cols=45  Identities=24%  Similarity=0.265  Sum_probs=34.2

Q ss_pred             cccchHHHHHHHHHhhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD--------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.++.++.+.-.+.+              ...+-|-++|+.|+||||||+.+-...
T Consensus        13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l   71 (441)
T TIGR00390        13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA   71 (441)
T ss_pred             hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            367877777777655542              124678899999999999999998765

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.32  E-value=0.0086  Score=50.14  Aligned_cols=42  Identities=29%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             chHHHHHHHHHhhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          156 GFDSMLDEVWGHIAD---YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       156 g~~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++.+.+......   ....+|+|+|..|+|||||+..+....
T Consensus       185 NTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l  229 (366)
T PRK14489        185 NTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPEL  229 (366)
T ss_pred             CCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHH
Confidence            345566666554321   256799999999999999999998876

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=96.32  E-value=0.0037  Score=52.54  Aligned_cols=27  Identities=41%  Similarity=0.632  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||.+.|..-.
T Consensus        43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~   69 (377)
T PRK11607         43 YKGEIFALLGASGCGKSTLLRMLAGFE   69 (377)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998743

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.31  E-value=0.0044  Score=45.86  Aligned_cols=26  Identities=35%  Similarity=0.470  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....|.|.|++|.||+||.+.|++=
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhc
Confidence            36778999999999999999999873

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.30  E-value=0.0063  Score=55.16  Aligned_cols=26  Identities=38%  Similarity=0.526  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...||+++|++|+||||++.++....
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~  209 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARC  209 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhH
Confidence            35799999999999999999988755

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=96.29  E-value=0.0068  Score=51.20  Aligned_cols=45  Identities=16%  Similarity=0.265  Sum_probs=36.2

Q ss_pred             ccccchHHHHHHHHHhhccCC----------CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYR----------CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ++++|.+..++.|.+++..+.          ..-+-++|+.|+||||+|..+-..
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~   59 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA   59 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            457899999999999887543          455778999999999999987543

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.29  E-value=0.0069  Score=48.39  Aligned_cols=42  Identities=26%  Similarity=0.294  Sum_probs=28.4

Q ss_pred             chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      |......+.+..+......+|.|.|..|+||||+++.+.+..
T Consensus        63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence            443333333333344456689999999999999999886643

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.28  E-value=0.0058  Score=51.96  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.+|.++|..|+||||++..+....
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999987654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=96.28  E-value=0.0091  Score=49.96  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=32.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          159 SMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       159 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+.+++.+.+.....+-|.|.||+|||+|.+.+.+..
T Consensus         8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~   46 (364)
T PF05970_consen    8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL   46 (364)
T ss_pred             HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence            345666677766778899999999999999999999876

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.27  E-value=0.0042  Score=48.70  Aligned_cols=26  Identities=42%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....+.|+|.+|+|||||++.+..=
T Consensus        28 ~~Ge~~~i~G~nGsGKSTL~~~l~GL   53 (235)
T COG1122          28 EKGERVLLIGPNGSGKSTLLKLLNGL   53 (235)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCc
Confidence            46789999999999999999998763

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.26  E-value=0.0043  Score=50.08  Aligned_cols=26  Identities=38%  Similarity=0.623  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +...+.||+|.+|.|||||.+.++.=
T Consensus        30 ~~GeI~GIIG~SGAGKSTLiR~iN~L   55 (339)
T COG1135          30 PKGEIFGIIGYSGAGKSTLLRLINLL   55 (339)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHhcc
Confidence            57889999999999999999999753

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.25  E-value=0.0041  Score=52.32  Aligned_cols=27  Identities=33%  Similarity=0.480  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.|..-.
T Consensus        48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~   74 (382)
T TIGR03415        48 EEGEICVLMGLSGSGKSSLLRAVNGLN   74 (382)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.25  E-value=0.0049  Score=47.30  Aligned_cols=25  Identities=40%  Similarity=0.635  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .+-.|.++.|++|+|||||.+.++.
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHh
Confidence            4778999999999999999999875

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.25  E-value=0.004  Score=54.28  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|.|||||++.+.+-.
T Consensus        48 ~~GEivgIiGpNGSGKSTLLkiLaGLl   74 (549)
T PRK13545         48 PEGEIVGIIGLNGSGKSTLSNLIAGVT   74 (549)
T ss_pred             eCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999998854

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.24  E-value=0.0086  Score=53.27  Aligned_cols=46  Identities=28%  Similarity=0.363  Sum_probs=37.8

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|..++..+.+ ..+-++|+.|+||||+|+.+....
T Consensus        16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l   62 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV   62 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999888876554 456789999999999999987653

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=96.22  E-value=0.0078  Score=48.74  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+-+|.|.|++|+||||+|+.+....
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l  116 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRL  116 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998875

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0085  Score=50.10  Aligned_cols=46  Identities=26%  Similarity=0.310  Sum_probs=38.4

Q ss_pred             ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.+.+|++..+++...|..    ..+.-+-|+|..|+|||+.++.|....
T Consensus        17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l   66 (366)
T COG1474          17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEEL   66 (366)
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHH
Confidence            3378999999999988764    334459999999999999999999876

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.20  E-value=0.014  Score=48.99  Aligned_cols=35  Identities=37%  Similarity=0.472  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhhccC----CCeEEEEEcCCCCcHHH-HHHH
Q 041747          158 DSMLDEVWGHIADY----RCRIIGLYGIGGVGKTT-LLKK  192 (211)
Q Consensus       158 ~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTT-La~~  192 (211)
                      ......+..++.++    +-++|.+||+.|+|||| ||+.
T Consensus       184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKL  223 (407)
T COG1419         184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKL  223 (407)
T ss_pred             HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHH
Confidence            44555566665544    58999999999999965 5554

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=96.18  E-value=0.0047  Score=54.80  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....++|+|.+|.|||||++.+..-.
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~  393 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            577899999999999999999998754

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.18  E-value=0.01  Score=50.21  Aligned_cols=46  Identities=24%  Similarity=0.258  Sum_probs=35.7

Q ss_pred             ccccchHHHHHHHHHhhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD--------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..+..+..++.+              .....|-++|+.|+||||||+.+-...
T Consensus        15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l   74 (443)
T PRK05201         15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (443)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3467888888888777643              124678999999999999999997754

>PF13245 AAA_19: Part of AAA domain

Probab=96.17  E-value=0.0067  Score=38.80  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             CCeEEEEEcCCCCcHH-HHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKT-TLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKT-TLa~~i~~  195 (211)
                      +-.+..|.|++|.||| |+++.+..
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567778999999999 55555443

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.15  E-value=0.0098  Score=48.39  Aligned_cols=26  Identities=35%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...-|-|+|..|+|||||++.+.+..
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34566799999999999999998753

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.14  E-value=0.0098  Score=50.53  Aligned_cols=45  Identities=22%  Similarity=0.169  Sum_probs=33.6

Q ss_pred             cccchHHHHHHHHHhhcc-------C---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD-------Y---------RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~-------~---------~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.+..++.|...+.+       .         ...-+-++|+.|+||||||+.+....
T Consensus        72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l  132 (412)
T PRK05342         72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL  132 (412)
T ss_pred             HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            478988888877555421       0         12568899999999999999998654

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.13  E-value=0.0058  Score=45.82  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....+++|+|++|.||+||.+.|-.
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHh
Confidence            4678999999999999999999865

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.13  E-value=0.009  Score=47.17  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=27.0

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++...|.   -+++.++|++|+||+||.+.+.++.
T Consensus       111 i~eLf~~l~---~~~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       111 LKELIEALQ---NRISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             HHHHHhhhc---CCEEEEECCCCCCHHHHHHHHhhhh
Confidence            555666554   2588899999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=96.13  E-value=0.0098  Score=51.21  Aligned_cols=45  Identities=27%  Similarity=0.347  Sum_probs=37.7

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+++|.+..+..|..++..+.. ..+-++|+.|+||||+|+.+-..
T Consensus        17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~   62 (451)
T PRK06305         17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKA   62 (451)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            5688999999999999876654 56778999999999999988654

>PRK08116 hypothetical protein; Validated

Probab=96.12  E-value=0.0063  Score=48.73  Aligned_cols=24  Identities=33%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .-+-++|..|+|||.||..|++..
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l  138 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANEL  138 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999986

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.11  E-value=0.0089  Score=55.01  Aligned_cols=46  Identities=20%  Similarity=0.264  Sum_probs=38.6

Q ss_pred             ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|..++..+++. .+-++|+.|+||||+|+.+-+..
T Consensus        15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L   61 (824)
T PRK07764         15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL   61 (824)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            56899999999999999876654 57789999999999999986654

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.0051  Score=50.00  Aligned_cols=28  Identities=46%  Similarity=0.591  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhhhhcC
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKFLDIN  201 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~~~v~  201 (211)
                      =++|-++|++|.|||+|.+.+..+. .++
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR  204 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKL-SIR  204 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhh-eee
Confidence            3678889999999999999999876 554

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=96.11  E-value=0.012  Score=47.88  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhhccC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          158 DSMLDEVWGHIADY--RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       158 ~~~~~~l~~~L~~~--~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+.+++..|.+.  +...|.|+|.+|+||||+.+.|.+..
T Consensus        21 q~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~   62 (313)
T TIGR00991        21 QTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGER   62 (313)
T ss_pred             HHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence            45666666666653  45678999999999999999999864

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=96.11  E-value=0.0051  Score=55.77  Aligned_cols=27  Identities=30%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....++|+|..|+|||||++.+.+-.
T Consensus       477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~  503 (686)
T TIGR03797       477 EPGEFVAIVGPSGSGKSTLLRLLLGFE  503 (686)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999999997654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.013  Score=49.87  Aligned_cols=33  Identities=33%  Similarity=0.482  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCcH-HHHHHHHHhhhhhcCCCccE
Q 041747          171 YRCRIIGLYGIGGVGK-TTLLKKLNNKFLDINHHFDL  206 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGK-TTLa~~i~~~~~~v~~~F~~  206 (211)
                      .++.||++||-+|+|| |+||+.-|==.   +.+|..
T Consensus       376 krPYVi~fvGVNGVGKSTNLAKIayWLl---qNkfrV  409 (587)
T KOG0781|consen  376 KRPYVISFVGVNGVGKSTNLAKIAYWLL---QNKFRV  409 (587)
T ss_pred             CCCeEEEEEeecCccccchHHHHHHHHH---hCCceE
Confidence            5799999999999999 55777666433   455644

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=96.10  E-value=0.0058  Score=53.17  Aligned_cols=26  Identities=35%  Similarity=0.580  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|+|.|++|+||||+++.+....
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l  308 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKL  308 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56899999999999999999998764

>COG4240 Predicted kinase [General function prediction only]

Probab=96.09  E-value=0.0095  Score=46.13  Aligned_cols=27  Identities=33%  Similarity=0.404  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++-++||.|+-|+|||||+-.|++..
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L   74 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLL   74 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHH
Confidence            568899999999999999999999876

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=96.09  E-value=0.0038  Score=53.50  Aligned_cols=24  Identities=50%  Similarity=0.812  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ..+.=|+||.+|+|||||.++|-+
T Consensus       105 ~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen  105 RGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             cccccceeCCCCCcHHHHHHHHHh
Confidence            567889999999999999999988

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=96.08  E-value=0.012  Score=49.33  Aligned_cols=45  Identities=18%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             cccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ..+++|.+.....|.+.+..+.+. -+-++|+.|+||||||..+-.
T Consensus        18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~   63 (365)
T PRK07471         18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMAR   63 (365)
T ss_pred             hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999988876644 588999999999999976544

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=96.06  E-value=0.013  Score=51.81  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=30.7

Q ss_pred             cchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.+.+..+.|.+....  ++..+|-++|+.|+||||+|+.+....
T Consensus       372 f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L  416 (568)
T PRK05537        372 FSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL  416 (568)
T ss_pred             hcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence            3444444544443322  456799999999999999999998865

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.05  E-value=0.0058  Score=47.19  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .+++.|+|++|.|||||.+.+..
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHH
Confidence            48999999999999999999863

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.05  E-value=0.011  Score=46.82  Aligned_cols=46  Identities=22%  Similarity=0.392  Sum_probs=36.1

Q ss_pred             ccccchHHHHH---HHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLD---EVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~---~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|.+..+.   -|+..|.+      ..++-|-.+|+.|.|||-+|+.+-|+.
T Consensus       121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~  175 (368)
T COG1223         121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA  175 (368)
T ss_pred             hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence            45678766544   46666665      468889999999999999999999876

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.05  E-value=0.018  Score=45.38  Aligned_cols=38  Identities=18%  Similarity=0.221  Sum_probs=28.1

Q ss_pred             HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+..+..+  .+..-+-++|.+|+|||+|+..|.+..
T Consensus        84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l  123 (244)
T PRK07952         84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL  123 (244)
T ss_pred             HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            44555555432  234578899999999999999999876

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.04  E-value=0.01  Score=48.52  Aligned_cols=26  Identities=38%  Similarity=0.447  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|.|+|..|.|||||++.+.+..
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~  168 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEI  168 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccC
Confidence            56899999999999999999988654

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK06526 transposase; Provisional

Probab=96.04  E-value=0.0057  Score=48.56  Aligned_cols=26  Identities=27%  Similarity=0.235  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..-+-++|++|+|||+||..|....
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHH
Confidence            45568999999999999999997754

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.03  E-value=0.012  Score=51.10  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=36.9

Q ss_pred             ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+++|.+..+..|..++..+.+. .+-++|+.|+||||+|+.+...
T Consensus        16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~   61 (486)
T PRK14953         16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKV   61 (486)
T ss_pred             HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999765544 4567999999999999997654

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=96.03  E-value=0.0058  Score=52.44  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .....++|+|++|+|||||++.+-.
T Consensus       360 ~~G~~lgIIGPSgSGKSTLaR~lvG  384 (580)
T COG4618         360 QAGEALGIIGPSGSGKSTLARLLVG  384 (580)
T ss_pred             cCCceEEEECCCCccHHHHHHHHHc
Confidence            4788999999999999999999865

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=96.02  E-value=0.0092  Score=53.37  Aligned_cols=55  Identities=15%  Similarity=0.285  Sum_probs=41.5

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV  210 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv  210 (211)
                      +.++|.+..++.|...+..  .+.+-++|+.|+|||||++.+.... . ..+|+..+|.
T Consensus        31 ~~vigq~~a~~~L~~~~~~--~~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~   85 (637)
T PRK13765         31 DQVIGQEHAVEVIKKAAKQ--RRHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVY   85 (637)
T ss_pred             HHcCChHHHHHHHHHHHHh--CCeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEe
Confidence            4578988888888877763  3578899999999999999988754 2 2345666664

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.02  E-value=0.0078  Score=50.64  Aligned_cols=26  Identities=42%  Similarity=0.584  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.++|+.|+||||.+..+-...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999887654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.00  E-value=0.0074  Score=48.90  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....++||||-+|+||||+++.|..-.
T Consensus        29 ~~GE~lgiVGESGsGKS~~~~aim~ll   55 (316)
T COG0444          29 KKGEILGIVGESGSGKSVLAKAIMGLL   55 (316)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHhcc
Confidence            477899999999999999999998743

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.99  E-value=0.012  Score=54.74  Aligned_cols=45  Identities=29%  Similarity=0.335  Sum_probs=35.1

Q ss_pred             cccchHHHHHHHHHhhcc--------C-CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD--------Y-RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~--------~-~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.+..++.+...+..        + ...++-++|+.|+||||||+.+.+..
T Consensus       569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l  622 (857)
T PRK10865        569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM  622 (857)
T ss_pred             eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            467988888887777652        1 12478899999999999999998754

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=95.99  E-value=0.0065  Score=55.31  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+.+-.
T Consensus       505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~  531 (711)
T TIGR00958       505 HPGEVVALVGPSGSGKSTVAALLQNLY  531 (711)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            578999999999999999999998754

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=95.98  E-value=0.0064  Score=53.65  Aligned_cols=27  Identities=33%  Similarity=0.418  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....++|+|.+|.|||||++.+.+-.
T Consensus       347 ~~G~~~aivG~sGsGKSTL~~ll~g~~  373 (547)
T PRK10522        347 KRGELLFLIGGNGSGKSTLAMLLTGLY  373 (547)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            578899999999999999999997643

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=95.97  E-value=0.0065  Score=53.81  Aligned_cols=27  Identities=30%  Similarity=0.421  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....++|||+.|.|||||++.+..-.
T Consensus       353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~  379 (567)
T COG1132         353 EPGEKVAIVGPSGSGKSTLIKLLLRLY  379 (567)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            478899999999999999999997654

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.013  Score=48.81  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      =+=+-++|++|.|||-||+.|+.+.
T Consensus       245 WkgvLm~GPPGTGKTlLAKAvATEc  269 (491)
T KOG0738|consen  245 WKGVLMVGPPGTGKTLLAKAVATEC  269 (491)
T ss_pred             cceeeeeCCCCCcHHHHHHHHHHhh
Confidence            3567789999999999999999986

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=95.96  E-value=0.013  Score=51.89  Aligned_cols=46  Identities=20%  Similarity=0.232  Sum_probs=38.6

Q ss_pred             ccccchHHHHHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCR-IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+..|..++.++.+. .+-++|+.|+||||+|+.+.+..
T Consensus        16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L   62 (563)
T PRK06647         16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL   62 (563)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            56899999999999999865544 57789999999999999987654

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.2  Score=45.74  Aligned_cols=45  Identities=29%  Similarity=0.348  Sum_probs=33.0

Q ss_pred             ccccchHHHHHHHHHhhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIAD---------YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..++|.+..+..+...+.-         ....+.-.+|+.|||||-||+.+-..
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~  544 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA  544 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH
Confidence            3467888888888777652         23456666899999999998887543

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.96  E-value=0.0081  Score=44.98  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=23.9

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          169 ADYRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       169 ~~~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ......||+|+|-+|+||+|+.+-|+-
T Consensus        28 ~A~~GdVisIIGsSGSGKSTfLRCiN~   54 (256)
T COG4598          28 QANAGDVISIIGSSGSGKSTFLRCINF   54 (256)
T ss_pred             ecCCCCEEEEecCCCCchhHHHHHHHh
Confidence            346789999999999999999999864

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.95  E-value=0.019  Score=47.38  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=27.9

Q ss_pred             HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++....++.+  ....-+-++|..|+|||.||..|.+..
T Consensus       168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l  207 (329)
T PRK06835        168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKEL  207 (329)
T ss_pred             HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHH
Confidence            34444444442  234779999999999999999998876

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=95.95  E-value=0.0065  Score=55.27  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....++|+|..|.|||||++.+.+-.
T Consensus       503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~  529 (710)
T TIGR03796       503 QPGQRVALVGGSGSGKSTIAKLVAGLY  529 (710)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            578899999999999999999997654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=95.94  E-value=0.014  Score=49.94  Aligned_cols=26  Identities=42%  Similarity=0.538  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.+|-++|..|+||||++..+....
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999998765

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=95.93  E-value=0.0068  Score=55.15  Aligned_cols=27  Identities=33%  Similarity=0.381  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....++|+|..|+|||||++.+.+-.
T Consensus       498 ~~G~~vaIvG~SGsGKSTLlklL~gl~  524 (708)
T TIGR01193       498 KMNSKTTIVGMSGSGKSTLAKLLVGFF  524 (708)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            578899999999999999999997643

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=95.93  E-value=0.012  Score=49.17  Aligned_cols=33  Identities=30%  Similarity=0.395  Sum_probs=25.7

Q ss_pred             HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          164 VWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       164 l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..++. .....|.|+|+.|+||||+++.+.+..
T Consensus       126 ~~~~~~-~~~glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       126 IIDAIA-PQEGIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             HHHHHh-ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            344443 356899999999999999999987653

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=95.93  E-value=0.0017  Score=50.51  Aligned_cols=26  Identities=38%  Similarity=0.561  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++++|++|.|||||.+.|-.-
T Consensus        28 ~~Gei~~LIGPNGAGKTTlfNlitG~   53 (250)
T COG0411          28 RPGEIVGLIGPNGAGKTTLFNLITGF   53 (250)
T ss_pred             cCCeEEEEECCCCCCceeeeeeeccc
Confidence            46789999999999999999887543

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=95.92  E-value=0.015  Score=46.12  Aligned_cols=37  Identities=19%  Similarity=0.130  Sum_probs=27.9

Q ss_pred             HHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++...+.+  +..-.|.++|..|+|||||++.|.+..
T Consensus        17 ~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~   55 (249)
T cd01853          17 ALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGER   55 (249)
T ss_pred             HHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            3344444433  467789999999999999999999864

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK12289 GTPase RsgA; Reviewed

Probab=95.92  E-value=0.009  Score=49.68  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=26.7

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++|...|.+   .++.|+|++|+|||||++.+..+.
T Consensus       163 I~eL~~~L~~---ki~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        163 LEALLEQLRN---KITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             HHHHhhhhcc---ceEEEEeCCCCCHHHHHHHHcCcc
Confidence            4566666642   468999999999999999998654

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=95.92  E-value=0.0068  Score=53.89  Aligned_cols=27  Identities=37%  Similarity=0.423  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++...++|+|..|.|||||++.+.+-.
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999999997643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	3e-11
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	8e-07
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 29/180 (16%)

Query: 40  RELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKCLGS 99
                 +ED      E   +   R + +  +      Q  E+  +        Q      
Sbjct: 31  EGKNIFTEDH----SELISKMSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHL--- 83

Query: 100 CCIYNCYSGYKIGKKVINKIRDVKELIKKGEI--------FENLQVTYKLPRPTVDGMVM 151
                        +  I+   +  +L++   I         +   +   +P+     +  
Sbjct: 84  ---------ADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIRE 134

Query: 152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKK-LNNKFLDINHHFDLVIWV 210
                    LDE+     D     + L+G  G GK+ +  + L+     I  ++D ++W+
Sbjct: 135 YHVDRVIKKLDEM----CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL 190

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 165 WGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHF-DLVIWV 210
                +     + +YG+ G GK+ L  +       +   F   V WV
Sbjct: 139 KLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 185

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 23/181 (12%)

Query: 37  EARRELEDLSEDVSRRVEEEEQQQRKRKKVVQGWFDAVESQIKEVDVISRKGEQEVQKKC 96
           +    ++ +  D    + EEE+        V+      +     + +I +K         
Sbjct: 21  KTSYIMDHMISDGFLTISEEEK--------VRNEPTQQQRAAMLIKMILKKDNDSYVS-- 70

Query: 97  LGSCCIYNCYSGYKIGKKVINKIRDVKELIKKGEIFENL-QVTYKLPRPTVDGMVMEET- 154
                 YN        K +   + D   ++      +++  +T  +     +G V +   
Sbjct: 71  -----FYNALLHEGY-KDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPV 124

Query: 155 --VGFDSMLDEV--WGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDL-VIW 209
             V    +++ +             + ++G+ G GK+ L  +       +   F   V W
Sbjct: 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHW 184

Query: 210 V 210
           V
Sbjct: 185 V 185

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 27/197 (13%), Positives = 58/197 (29%), Gaps = 60/197 (30%)

Query: 55  EEEQQQRKRKKVVQGWFDA---------VESQIK------EVDVISRKGEQEVQKKCLGS 99
           E  + Q + K ++  + DA         V+   K      E+D I    +       L  
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 100 CCIYNCYSGYKIGKKVINKIRDVKELIKK--GEIFENLQVTYKLPRPTVDGMVMEETVGF 157
             +       +         + V+E+++     +   ++   + P           T  +
Sbjct: 70  TLLSKQEEMVQ---------KFVEEVLRINYKFLMSPIKTEQRQPSM--------MTRMY 112

Query: 158 DSMLDEVWGH---IADY-RCRI------------------IGLYGIGGVGKTTL-LKKLN 194
               D ++      A Y   R+                  + + G+ G GKT + L    
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 195 NKFLDINHHFDL-VIWV 210
           +    +    D  + W+
Sbjct: 173 SY--KVQCKMDFKIFWL 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.64
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.45
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.13
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.09
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.06
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.26
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.19
2fna_A	357	Conserved hypothetical protein; structural genomic	98.17
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.16
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.12
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.11
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.06
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.06
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.95
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.95
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.93
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.84
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.83
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.81
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.72
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.71
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.69
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.66
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.66
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.64
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.63
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.62
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.6
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.6
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.58
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.57
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.56
3pvs_A	447	Replication-associated recombination protein A; ma	97.56
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.54
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.52
3bos_A	242	Putative DNA replication factor; P-loop containing	97.52
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.51
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.51
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.51
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.49
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.48
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.48
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.46
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.45
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.44
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.44
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.43
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.43
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.42
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.41
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.41
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.41
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.4
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.38
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.38
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.38
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.37
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.37
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.36
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.36
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.34
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.34
1g6h_A	257	High-affinity branched-chain amino acid transport	97.34
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.34
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.34
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.34
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.33
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.33
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.32
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.32
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.32
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.32
3co5_A	143	Putative two-component system transcriptional RES	97.31
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.31
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.31
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.29
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.29
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.29
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.28
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.28
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.28
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.28
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.28
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.27
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.27
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.27
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.27
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.26
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.26
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.26
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.25
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.24
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.22
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.22
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.21
2og2_A	359	Putative signal recognition particle receptor; nuc	97.2
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.2
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.19
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.18
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.18
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.18
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.17
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.16
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.16
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.16
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.15
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.14
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.12
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.11
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.11
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.1
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.1
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.1
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.07
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.05
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.03
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.03
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.03
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.01
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.99
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.99
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.99
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.99
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.98
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.98
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.98
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.98
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.98
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.97
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.96
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.95
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.95
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.94
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.94
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.93
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.93
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.92
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.92
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.91
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.91
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.91
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.9
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.88
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.88
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.87
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.86
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.84
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.84
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.83
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.83
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.82
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.82
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.82
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.8
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.79
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.79
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.79
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.78
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.77
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.77
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.77
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.77
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.76
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.76
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.74
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.73
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.71
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.71
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.69
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.69
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.68
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.68
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.68
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.67
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.67
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.67
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.67
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.65
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.65
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.65
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.62
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.61
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.6
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.58
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.56
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.56
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.55
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.53
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.53
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.49
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.49
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.49
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.49
2qgz_A	308	Helicase loader, putative primosome component; str	96.46
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.44
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.42
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.41
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.41
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.4
3end_A	307	Light-independent protochlorophyllide reductase ir	96.38
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.37
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.37
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.36
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.36
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.36
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.33
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.32
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.31
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.3
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.3
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.29
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.28
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.26
2xxa_A	433	Signal recognition particle protein; protein trans	96.24
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.24
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.23
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.21
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.21
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.21
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.2
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.2
3ice_A	422	Transcription termination factor RHO; transcriptio	96.17
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.17
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.17
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.14
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.14
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.13
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.12
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.12
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.11
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.1
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.08
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.06
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.05
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.05
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.04
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.04
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.03
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.02
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.02
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.01
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.01
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.99
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.99
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.98
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.98
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.98
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.91
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.9
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.9
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.87
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.85
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.85
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.84
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.8
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.79
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.78
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.78
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.77
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.77
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.75
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.72
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.71
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.69
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.67
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.67
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.67
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.65
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.63
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.61
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	95.6
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.59
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.59
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.57
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.57
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.56
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.53
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	95.53
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.53
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.52
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.51
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.49
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.46
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.44
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.39
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.39
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.37
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.36
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.31
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.3
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.29
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.24
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.22
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.21
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	95.2
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.2
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.19
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.18
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.17
3l0o_A	427	Transcription termination factor RHO; helicase, RH	95.12
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.08
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.04
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.01
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	94.91
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	94.88
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.88
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	94.86
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	94.79
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.79
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	94.77
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	94.76
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.75
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.69
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.66
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.52
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	94.51
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	94.5
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	94.47
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	94.45
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.43
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	94.34
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	94.34
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	94.33
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	94.32
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.31
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.31
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.26
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.26
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	94.21
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	94.06
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.03
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	94.0
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	93.99
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	93.95
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	93.92
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	93.89
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	93.89
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	93.85
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.83
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	93.81
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	93.79
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	93.76
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	93.75
3io5_A	333	Recombination and repair protein; storage dimer, i	93.74
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	93.74
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	93.62
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	93.57
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	93.55
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	93.47
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	93.47
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	93.33
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	93.26
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	93.19
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	93.0
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	92.99
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	92.95
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	92.88
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	92.85
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	92.83
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	92.81
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	92.81
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	92.78
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	92.67
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	92.38
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	92.25
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	92.15
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	92.14
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	92.01
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	91.98
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	91.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	91.86
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	91.79
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	91.77
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	90.84
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	90.12
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	90.1
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	90.01
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	89.88
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	89.88
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	89.82
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	89.57
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	89.52
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	89.44
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	89.4
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	89.35
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	89.3
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	89.21
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	88.87
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	88.84
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	88.5
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	88.41
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	88.41
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	88.4
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	88.38
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	88.27
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	88.22
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	88.1
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	88.09
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	87.95
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	87.0
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	86.88
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	86.69
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	86.29
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	86.12
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	85.83
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	85.47
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	85.29
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	84.5
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	84.14
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	83.87
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	82.53
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	82.38
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	81.44
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	80.74
3lfu_A	647	DNA helicase II; SF1 helicase, ATP-binding, DNA da	80.63
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	80.61
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	80.09

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.64  E-value=8.1e-16  Score=106.22  Aligned_cols=80  Identities=13%  Similarity=0.136  Sum_probs=70.8

Q ss_pred             hHhhHhHHHHHhhhccchhhchhHhHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHHHHHHHHHh
Q 041747            7 VLDILTRLWDCTATNGSYIRHLKKNLNSLSEARRELEDLSEDVSRRVEEEEQQQ-RKRKKVVQGWFDAVESQIKEVDVIS   85 (211)
Q Consensus         7 v~~~~~~l~~~~~~~~~~~~~~~~~v~~L~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~v~~~~~~~ed~l   85 (211)
                      +.++++||.+++.+++..+.+++++++.|+++|+.|+++|.|       ++... ...++.++.|+++||+++||+||+|
T Consensus         3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i   75 (115)
T 3qfl_A            3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDVV   75 (115)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            445899999999999999999999999999999999999998       55442 2236899999999999999999999


Q ss_pred             HhhHHHHh
Q 041747           86 RKGEQEVQ   93 (211)
Q Consensus        86 d~~~~~~~   93 (211)
                      |+|.++..
T Consensus        76 D~f~~~~~   83 (115)
T 3qfl_A           76 DKFLVQVD   83 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998764

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.45  E-value=6.8e-14  Score=121.17  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=51.0

Q ss_pred             cchHHHHHHHHHhhccC---CCeEEEEEcCCCCcHHHHHHHHHh--hhhhcCCCccEEEEeC
Q 041747          155 VGFDSMLDEVWGHIADY---RCRIIGLYGIGGVGKTTLLKKLNN--KFLDINHHFDLVIWVA  211 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTTLa~~i~~--~~~~v~~~F~~~~wv~  211 (211)
                      +||+.++++|.++|.+.   +.++|+|+||||+||||||+.+|+  +. +++.+|++++||+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~  191 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLK  191 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEE
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEE
Confidence            69999999999999753   689999999999999999999998  55 7789999999984

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.13  E-value=1.6e-11  Score=111.51  Aligned_cols=57  Identities=14%  Similarity=0.258  Sum_probs=51.5

Q ss_pred             ccchHHHHHHHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccE-EEEeC
Q 041747          154 TVGFDSMLDEVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDL-VIWVA  211 (211)
Q Consensus       154 ~~g~~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~-~~wv~  211 (211)
                      .+||+..+++|.++|.+ +..++|+|+||||+||||||+.+|++. ++..+|++ ++||+
T Consensus       130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVs  188 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLN  188 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEE
T ss_pred             CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEE
Confidence            48999999999999976 568999999999999999999999987 77889998 89984

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.09  E-value=5.7e-11  Score=103.43  Aligned_cols=59  Identities=17%  Similarity=0.287  Sum_probs=51.0

Q ss_pred             ccccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhhhhc-CCCc-cEEEEeC
Q 041747          152 EETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKFLDI-NHHF-DLVIWVA  211 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v-~~~F-~~~~wv~  211 (211)
                      +.++||+..++.|..+|..  ++.++|+|+||||+||||||+.+|++. .+ ..+| +.++||+
T Consensus       124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~  186 (591)
T 1z6t_A          124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVS  186 (591)
T ss_dssp             SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEE
T ss_pred             CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEE
Confidence            4589999999999999973  568999999999999999999999876 55 6778 4799974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.06  E-value=5.4e-11  Score=111.07  Aligned_cols=61  Identities=18%  Similarity=0.252  Sum_probs=49.6

Q ss_pred             cccccchHHHHHHHHHhhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCc-cEEEEeC
Q 041747          151 MEETVGFDSMLDEVWGHIA--DYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHF-DLVIWVA  211 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F-~~~~wv~  211 (211)
                      ...++||+.++++|..+|.  +++.++|+|+||||+||||||+.+|++...+..+| +.++||+
T Consensus       123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~  186 (1249)
T 3sfz_A          123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS  186 (1249)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE
T ss_pred             CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE
Confidence            3558999999999999995  35789999999999999999999999751235555 5566874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.26  E-value=1.6e-06  Score=63.57  Aligned_cols=46  Identities=22%  Similarity=0.292  Sum_probs=40.6

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|++..++.+..++.......+-|+|+.|+||||||+.+.+..
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999987666778899999999999999998864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.19  E-value=2.2e-06  Score=69.14  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=39.0

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++||+.+.+.|..++.+.  .++.|+|++|+|||||++.+.+..
T Consensus        12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc
Confidence            56899999999999988743  799999999999999999998753

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.17  E-value=4.3e-06  Score=67.53  Aligned_cols=42  Identities=17%  Similarity=0.316  Sum_probs=37.9

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++||+.+.+.|.. +..   .++.|+|++|+|||||++.+.+..
T Consensus        13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence            568999999999999 764   699999999999999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.16  E-value=2.5e-06  Score=62.38  Aligned_cols=46  Identities=24%  Similarity=0.277  Sum_probs=40.4

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|++..+..+...+.......+-|+|+.|+||||||+.+.+..
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999987667778899999999999999998764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.12  E-value=2.6e-06  Score=69.60  Aligned_cols=46  Identities=24%  Similarity=0.340  Sum_probs=40.7

Q ss_pred             ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|++..++.+..++..    .....+.|+|++|+|||||++.+.+..
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999873    457799999999999999999999865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.11  E-value=4.2e-06  Score=62.80  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..++.+..++.......+-|+|++|+||||||+.+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999987655569999999999999999998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.06  E-value=6e-06  Score=62.67  Aligned_cols=46  Identities=24%  Similarity=0.334  Sum_probs=39.6

Q ss_pred             ccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..++.+..++.... ...+-|+|++|+|||||++.+.+..
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999987543 4588999999999999999998765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.06  E-value=2.1e-06  Score=71.05  Aligned_cols=46  Identities=20%  Similarity=0.031  Sum_probs=38.0

Q ss_pred             ccccchHHHHHHHHHhh-cc------CCCeEEEE--EcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHI-AD------YRCRIIGL--YGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L-~~------~~~~vi~I--~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|++.+++.|..+| ..      .....+-|  +|++|+|||||++.+++..
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            56899999999999988 42      24556666  9999999999999999875

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.95  E-value=9.1e-06  Score=66.57  Aligned_cols=46  Identities=22%  Similarity=0.087  Sum_probs=39.6

Q ss_pred             ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|++..++.+..+|..    .....+-|+|++|+||||||+.+++..
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999887753    446789999999999999999999864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.95  E-value=1.8e-05  Score=64.79  Aligned_cols=46  Identities=22%  Similarity=0.200  Sum_probs=39.7

Q ss_pred             ccccchHHHHHHHHHhhcc----CCCe--EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD----YRCR--IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.++|++...+.+..++..    ....  .+.|+|++|+|||||++.+.+..
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999998864    3334  89999999999999999999876

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.93  E-value=9.1e-06  Score=66.39  Aligned_cols=46  Identities=20%  Similarity=0.235  Sum_probs=40.3

Q ss_pred             ccccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.++|++...+.+..+|..    .....+.|+|++|+||||||+.+.+..
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999853    457789999999999999999999865

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.84  E-value=2.4e-05  Score=62.51  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=39.9

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+..++.......+-++|+.|+||||+|+.+.+..
T Consensus        25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4578999999999999887666569999999999999999998763

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.83  E-value=2.1e-05  Score=62.74  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..++.+..++.......+-++|++|+||||+|+.+.+..
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            5688999999999999887665559999999999999999998763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.81  E-value=1.6e-05  Score=58.31  Aligned_cols=41  Identities=20%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHhhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          157 FDSMLDEVWGHIAD---YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       157 ~~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+...+.+..++.+   .....+.++|++|+|||||++.+.+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            44455555555543   356899999999999999999998875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.72  E-value=4.8e-05  Score=59.77  Aligned_cols=46  Identities=28%  Similarity=0.345  Sum_probs=38.4

Q ss_pred             ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|...+..             ....-+-|+|++|+||||||+.+.+..
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            5688999999998887742             345678999999999999999998865

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.71  E-value=2.9e-05  Score=62.77  Aligned_cols=46  Identities=20%  Similarity=0.287  Sum_probs=39.0

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+..++.......+-++|+.|+||||||+.+.+..
T Consensus        37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999886654558999999999999999998763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.69  E-value=3.9e-05  Score=62.19  Aligned_cols=45  Identities=18%  Similarity=0.108  Sum_probs=38.0

Q ss_pred             ccccchHHHHHHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHI-ADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+++|.+...+.+..++ .......+.++|++|+|||||++.+.+.
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            55789999999999998 6554444999999999999999998774

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.66  E-value=6e-05  Score=59.93  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=39.6

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+..++.......+-++|+.|+||||+|+.+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            5588999999999999887665558999999999999999998763

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.66  E-value=4.6e-05  Score=53.96  Aligned_cols=45  Identities=20%  Similarity=0.236  Sum_probs=33.6

Q ss_pred             cccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|....+.++...+..  ....-|-|+|..|+|||+||+.+++..
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            357877777777777642  333456799999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.64  E-value=5.3e-05  Score=61.27  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=35.9

Q ss_pred             ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..++.+-..+..     .....+.++|++|+||||||+.+.+..
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4567877777776666542     245789999999999999999998865

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.63  E-value=7e-05  Score=55.79  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=29.5

Q ss_pred             HHHHHHHHhhccC----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          159 SMLDEVWGHIADY----RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       159 ~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+.+..++...    ....+-|+|++|+||||||+.+++..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3455555665532    12788999999999999999999876

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.62  E-value=6.5e-05  Score=59.85  Aligned_cols=46  Identities=26%  Similarity=0.362  Sum_probs=37.0

Q ss_pred             ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|..++..             ...+.+-++|++|+||||||+.+.+..
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            4578888888877776542             345679999999999999999999865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.60  E-value=3.6e-05  Score=57.93  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.7

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          170 DYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....+|+|+|++|+|||||++.|..-
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            457889999999999999999998654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.60  E-value=8.7e-05  Score=60.04  Aligned_cols=46  Identities=22%  Similarity=0.383  Sum_probs=38.0

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..++.|..++.......+.++|+.|+||||||+.+.+..
T Consensus        25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4578888888888888876655458999999999999999987753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.58  E-value=0.00013  Score=57.63  Aligned_cols=46  Identities=20%  Similarity=0.231  Sum_probs=37.6

Q ss_pred             ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|...+..            ....-+-++|++|+||||||+.+.+..
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4578999888888887632            235688999999999999999998865

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.57  E-value=0.00011  Score=59.14  Aligned_cols=47  Identities=26%  Similarity=0.295  Sum_probs=38.8

Q ss_pred             cccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++|.+..++.+..++..     .....+-|+|+.|+||||||+.+.+..
T Consensus        28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            35689999999988888763     345678899999999999999998764

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.56  E-value=0.00011  Score=63.10  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=39.6

Q ss_pred             cccccchHHHHHHHHHhhcc-----------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIAD-----------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++|.+..++.|..||..                 ...+.+-|+|+.|+||||||+.+.+..
T Consensus        38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999874                 134789999999999999999998764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.56  E-value=7.7e-05  Score=62.81  Aligned_cols=46  Identities=24%  Similarity=0.274  Sum_probs=38.5

Q ss_pred             ccccchHHHH---HHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSML---DEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+   ..|...+.......+-++|+.|+||||||+.|.+..
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence            4578888777   677777776777889999999999999999999865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.54  E-value=0.00012  Score=56.52  Aligned_cols=46  Identities=24%  Similarity=0.220  Sum_probs=34.4

Q ss_pred             ccccchHHHHHHHHHhhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA---D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+..++.   .         ....-+-++|++|+||||||+.+.+..
T Consensus         6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            457888777777655532   1         234557799999999999999998865

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.52  E-value=8.9e-05  Score=62.78  Aligned_cols=46  Identities=22%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..+..++..|......-+-++|++|+||||||+.+....
T Consensus       180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999865445556799999999999999998763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.52  E-value=0.00012  Score=55.61  Aligned_cols=40  Identities=18%  Similarity=0.236  Sum_probs=32.3

Q ss_pred             HHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          158 DSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       158 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+.+..++.......+-|+|++|+||||||+.+.+..
T Consensus        37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4566666666655567889999999999999999998865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.51  E-value=7.2e-05  Score=53.99  Aligned_cols=27  Identities=30%  Similarity=0.334  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++++|++|.|||||++.+..-.
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            567899999999999999999998754

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.51  E-value=7.1e-05  Score=60.15  Aligned_cols=44  Identities=9%  Similarity=0.087  Sum_probs=39.2

Q ss_pred             ccchHHHHHHHHHhhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          154 TVGFDSMLDEVWGHIAD----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       154 ~~g~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.||+++.+.|...|..    .....+-|+|++|+|||++++.|.++.
T Consensus        22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            67999999999988764    577889999999999999999999876

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.51  E-value=0.00014  Score=59.20  Aligned_cols=46  Identities=24%  Similarity=0.334  Sum_probs=38.9

Q ss_pred             ccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..++.+..++.... ...+-|+|+.|+||||||+.+.+..
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l   62 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   62 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999987644 4568899999999999999998764

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.49  E-value=0.00011  Score=58.67  Aligned_cols=46  Identities=22%  Similarity=0.355  Sum_probs=37.8

Q ss_pred             ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+..+..++..     .....+-|+|+.|+||||||+.+++..
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence            5588998888888877752     345678899999999999999998865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.48  E-value=7.4e-05  Score=59.97  Aligned_cols=27  Identities=33%  Similarity=0.308  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|+|+|++|+|||||++.|..-.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            467899999999999999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.48  E-value=8.3e-05  Score=55.49  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+|+|+|++|+|||||++.+...
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999999999999999764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.46  E-value=0.00015  Score=57.49  Aligned_cols=45  Identities=24%  Similarity=0.354  Sum_probs=33.9

Q ss_pred             cccchHHHHHHHHHhhc---------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIA---------------DYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++|.+..++.|..++.               ......+-++|+.|+||||||+.+.+..
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            46788777777765543               2344578999999999999999887654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.45  E-value=7e-05  Score=56.84  Aligned_cols=26  Identities=46%  Similarity=0.621  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.+.+-.
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            67899999999999999999987643

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.44  E-value=0.00017  Score=55.87  Aligned_cols=46  Identities=24%  Similarity=0.275  Sum_probs=33.5

Q ss_pred             ccccchHHHHHHHHHhh---cc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHI---AD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+...+   ..         ....-+.|+|++|+||||||+.+.+..
T Consensus        12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence            45788877666665443   21         123457899999999999999998865

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.44  E-value=0.00011  Score=54.88  Aligned_cols=28  Identities=36%  Similarity=0.506  Sum_probs=24.7

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          170 DYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .....+|.|+|++|+|||||++.+....
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999997765

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.43  E-value=8.4e-05  Score=57.39  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .. .+++|+|++|+|||||++.+..-
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence            46 89999999999999999999864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.43  E-value=9.6e-05  Score=57.02  Aligned_cols=26  Identities=31%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+|+|.|++|+|||||++.+.+.
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999999999774

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.42  E-value=8.1e-05  Score=57.25  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|+|||||++.+..-
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            47789999999999999999999764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.41  E-value=7.4e-05  Score=57.03  Aligned_cols=27  Identities=30%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.41  E-value=0.00017  Score=57.25  Aligned_cols=27  Identities=22%  Similarity=0.148  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|+|+|..|+|||||++.+....
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999987754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.41  E-value=0.00029  Score=57.45  Aligned_cols=46  Identities=22%  Similarity=0.173  Sum_probs=37.6

Q ss_pred             ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|...+..            ...+-+-++|+.|+||||||+.+.+..
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            4578999888888887631            346678899999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.40  E-value=0.0001  Score=52.57  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+.|+|++|+|||||++.+.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            66799999999999999999999875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.38  E-value=9.7e-05  Score=57.76  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            577899999999999999999998743

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.38  E-value=0.00021  Score=53.35  Aligned_cols=25  Identities=32%  Similarity=0.510  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....+|+|.|++|+|||||++.+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.00013  Score=54.41  Aligned_cols=26  Identities=42%  Similarity=0.367  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.|+|+.|+||||+++.+....
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            56799999999999999999997643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.37  E-value=0.00013  Score=56.31  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+|+|+|++|+|||||++.+....
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999999998543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.37  E-value=0.0001  Score=56.71  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.36  E-value=0.00011  Score=57.53  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            577899999999999999999998743

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.36  E-value=0.00028  Score=56.62  Aligned_cols=46  Identities=24%  Similarity=0.299  Sum_probs=37.1

Q ss_pred             ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|...+.-            ...+-+-++|+.|+|||+||+.+.+..
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            5688999999888887721            124568899999999999999998865

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.34  E-value=0.00027  Score=56.86  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|...+.-            ...+-|-++|+.|+|||+||+.+.+..
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            5678888888887766531            234678899999999999999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.34  E-value=0.00022  Score=56.06  Aligned_cols=46  Identities=24%  Similarity=0.222  Sum_probs=32.1

Q ss_pred             ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.|.++.++.|...+.    +         .-.+=+.++|++|+|||||++.|.+..
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence            446777777777765432    1         111229999999999999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.34  E-value=9.9e-05  Score=57.54  Aligned_cols=27  Identities=22%  Similarity=0.388  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999997743

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.34  E-value=0.00013  Score=57.14  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|+|||||++.+..-
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            57789999999999999999999884

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.34  E-value=0.00025  Score=56.07  Aligned_cols=46  Identities=22%  Similarity=0.248  Sum_probs=36.4

Q ss_pred             ccccchHHHHHHHHHhhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD--------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..++.+...+..              ....-+-++|+.|+||||||+.+.+..
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3478988888888777643              235567799999999999999998765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.34  E-value=0.0001  Score=56.85  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+..-.
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998743

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.33  E-value=0.00012  Score=57.01  Aligned_cols=27  Identities=37%  Similarity=0.535  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998743

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.33  E-value=9.2e-05  Score=56.15  Aligned_cols=27  Identities=33%  Similarity=0.605  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998743

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.32  E-value=0.00012  Score=57.72  Aligned_cols=26  Identities=35%  Similarity=0.584  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|+|||||++.+..-
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            46789999999999999999999764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.32  E-value=0.00012  Score=56.78  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|.|||||++.+.+-
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999883

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.32  E-value=0.00013  Score=56.27  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998743

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.32  E-value=0.00028  Score=53.28  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=29.2

Q ss_pred             HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+.+-..+......+|.|+|.+|+|||||+..+....
T Consensus        25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34444444444578899999999999999999988763

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.31  E-value=6.9e-05  Score=52.96  Aligned_cols=45  Identities=16%  Similarity=0.181  Sum_probs=32.0

Q ss_pred             cccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++|....+.++...+..  ....-|-|+|..|+|||+||+.+++..
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            357777777777776643  333446799999999999999998754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.31  E-value=0.00016  Score=57.75  Aligned_cols=26  Identities=38%  Similarity=0.591  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.+....
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999998765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.31  E-value=0.00013  Score=55.82  Aligned_cols=27  Identities=30%  Similarity=0.505  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.29  E-value=0.00035  Score=56.82  Aligned_cols=46  Identities=22%  Similarity=0.253  Sum_probs=35.2

Q ss_pred             ccccchHHHHHH---HHHhhccCC--CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDE---VWGHIADYR--CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|.+..+..   +...+....  .+.+-++|++|+||||||+.+.+..
T Consensus        44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            468898877665   444444433  3589999999999999999999876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.29  E-value=0.00016  Score=57.79  Aligned_cols=26  Identities=38%  Similarity=0.703  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|+|+|++|+|||||++.+..-.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999998765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.29  E-value=0.00014  Score=57.10  Aligned_cols=27  Identities=33%  Similarity=0.580  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            577899999999999999999998743

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.28  E-value=0.00013  Score=57.09  Aligned_cols=26  Identities=31%  Similarity=0.520  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|.|||||++.+.+-
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            47789999999999999999999764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.28  E-value=0.0001  Score=55.66  Aligned_cols=24  Identities=29%  Similarity=0.171  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ...+++|+|++|+|||||++.+..
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            678999999999999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.28  E-value=0.00024  Score=53.47  Aligned_cols=42  Identities=14%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+..+.+...+...+..+|.|+|.+|+|||||++.+....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344555555555545678899999999999999999987653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.28  E-value=0.00015  Score=56.88  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|+|||||++.+..-
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            47789999999999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.28  E-value=0.00015  Score=56.66  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999998743

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.27  E-value=0.00013  Score=56.48  Aligned_cols=27  Identities=33%  Similarity=0.576  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999997743

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.27  E-value=0.00014  Score=56.49  Aligned_cols=27  Identities=33%  Similarity=0.480  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            367799999999999999999998753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.27  E-value=0.00019  Score=57.42  Aligned_cols=27  Identities=30%  Similarity=0.272  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|+|+|++|+|||||++.+..-.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.27  E-value=0.00031  Score=56.48  Aligned_cols=26  Identities=35%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.+|||.|++|+|||||++.+..-.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            46699999999999999999997654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.26  E-value=0.00021  Score=64.85  Aligned_cols=46  Identities=24%  Similarity=0.308  Sum_probs=39.5

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..+..++..|......-+-++|++|+||||||+.+.+..
T Consensus       170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            4579999999999999876555567899999999999999998764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.26  E-value=0.00014  Score=57.42  Aligned_cols=27  Identities=44%  Similarity=0.508  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            477899999999999999999998743

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.26  E-value=0.00014  Score=56.50  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.25  E-value=0.00053  Score=52.91  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhh
Q 041747          176 IGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       176 i~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.|+|++|+|||||++.+.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.24  E-value=0.00022  Score=56.55  Aligned_cols=45  Identities=31%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             cccchHHHHHHHHHhhccC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIADY---------RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.+..++.+...+...         ....+.++|+.|+||||||+.+.+..
T Consensus        18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3568777777777766531         23589999999999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.22  E-value=0.00012  Score=55.82  Aligned_cols=25  Identities=36%  Similarity=0.363  Sum_probs=17.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH-hh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN-NK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~-~~  196 (211)
                      ...+++|+|++|+|||||++.+. ..
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            56799999999999999999998 53

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.22  E-value=0.0004  Score=62.16  Aligned_cols=46  Identities=24%  Similarity=0.290  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..+..++..|......-+-++|.+|+||||||+.+.+..
T Consensus       186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999876666677899999999999999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.20  E-value=0.00024  Score=58.07  Aligned_cols=26  Identities=38%  Similarity=0.591  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.+....
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            57899999999999999999998765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.20  E-value=0.00033  Score=62.71  Aligned_cols=46  Identities=22%  Similarity=0.275  Sum_probs=39.1

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|++..+..+...|......-+-++|++|+||||+|+.+....
T Consensus       180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999876555557799999999999999998763

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.19  E-value=0.00024  Score=55.12  Aligned_cols=25  Identities=36%  Similarity=0.430  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....+|+|+|++|+|||||++.+..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999974

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.18  E-value=0.00026  Score=57.13  Aligned_cols=27  Identities=37%  Similarity=0.474  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+....
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999998765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.18  E-value=0.00046  Score=58.57  Aligned_cols=27  Identities=41%  Similarity=0.573  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|+|+|.+|+|||||++.|....
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            357899999999999999999998765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.18  E-value=0.0003  Score=54.68  Aligned_cols=45  Identities=18%  Similarity=0.196  Sum_probs=32.5

Q ss_pred             cccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.......+...+..  ....-+-|+|..|+|||+||+.+++..
T Consensus         7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A            7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence            467877777777766542  234567799999999999999999864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.17  E-value=0.00047  Score=56.20  Aligned_cols=46  Identities=24%  Similarity=0.299  Sum_probs=36.3

Q ss_pred             ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|...+..            ...+-|-++|+.|+|||+||+.+.+..
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            5578998888888877631            123457899999999999999999875

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.16  E-value=0.00076  Score=55.57  Aligned_cols=47  Identities=23%  Similarity=0.246  Sum_probs=38.1

Q ss_pred             cccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -.+++|.+..++.|..++..            ....-+-|+|+.|+|||+||+.|.+..
T Consensus       114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999998888731            234678899999999999999998764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.16  E-value=0.00028  Score=53.33  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...+++|+|++|+|||||++.+...
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999999999874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.16  E-value=0.00053  Score=53.75  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=31.4

Q ss_pred             ccccchHHHHHHHHHhhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA---D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|.+..+.++.....   .         .-.+=+.|+|++|+|||||++.+.+..
T Consensus        40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence            457787665555544332   1         011228999999999999999998865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.15  E-value=0.00024  Score=56.35  Aligned_cols=27  Identities=30%  Similarity=0.505  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            577899999999999999999998753

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.14  E-value=0.00062  Score=54.44  Aligned_cols=46  Identities=22%  Similarity=0.080  Sum_probs=38.4

Q ss_pred             ccccchHHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|.+..+..+..++.... ..++-+.|+.|+||||+|+.+.+..
T Consensus        26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            568899999999999987654 4577778889999999999998754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.12  E-value=0.00024  Score=55.54  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+++|+|++|+|||||++.+..-
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            779999999999999999999763

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.11  E-value=0.00028  Score=54.90  Aligned_cols=46  Identities=24%  Similarity=0.217  Sum_probs=31.9

Q ss_pred             ccccchHHHHHHHHHhhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA---D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+...+.   .         ....-+-++|+.|+||||||+.+.+..
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            457777665555555432   1         123346799999999999999998865

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.11  E-value=0.00068  Score=56.95  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=36.9

Q ss_pred             ccccchHHHHHHHHHhhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|...+..            ...+-|-++|+.|+|||+||+.+.+..
T Consensus       134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            5678998888888876621            234678899999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.10  E-value=0.00035  Score=54.56  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            467899999999999999999998754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.10  E-value=0.00089  Score=52.21  Aligned_cols=27  Identities=26%  Similarity=0.153  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....-+-++|+.|+||||||+.+.+..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            456778899999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.10  E-value=0.00034  Score=55.88  Aligned_cols=26  Identities=19%  Similarity=0.215  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +...+++|+|++|.|||||++.|.+-
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            57789999999999999999999764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.07  E-value=0.00063  Score=53.81  Aligned_cols=27  Identities=26%  Similarity=0.165  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|-|.|++|+|||||++.+....
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999997653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.05  E-value=0.00038  Score=56.92  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|..-.
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            578899999999999999999998743

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.05  E-value=0.00048  Score=53.35  Aligned_cols=27  Identities=33%  Similarity=0.352  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|.++|++|+||||+++.+....
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            356799999999999999999997754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.03  E-value=0.0004  Score=56.70  Aligned_cols=27  Identities=37%  Similarity=0.381  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            467899999999999999999998743

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00082  Score=56.21  Aligned_cols=46  Identities=24%  Similarity=0.312  Sum_probs=36.2

Q ss_pred             ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.|.+..++.|...+.    .         ..++=|=++|++|+|||+||+.|.+..
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence            346788888888876643    1         346678889999999999999999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.03  E-value=0.00026  Score=56.58  Aligned_cols=26  Identities=31%  Similarity=0.440  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|.|||||++.+..-
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcC
Confidence            57889999999999999999999764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.01  E-value=0.00098  Score=54.20  Aligned_cols=27  Identities=30%  Similarity=0.311  Sum_probs=22.8

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          170 DYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ......|.++|+.|+|||||++.+...
T Consensus        21 ~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           21 DNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            345667999999999999999988764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.00  E-value=0.00042  Score=55.11  Aligned_cols=26  Identities=42%  Similarity=0.535  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|+++|.+|+||||++..+....
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999987655

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.00089  Score=55.91  Aligned_cols=46  Identities=30%  Similarity=0.385  Sum_probs=35.9

Q ss_pred             ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.|.+..++.|...+.    .         ..++=|-++|++|+|||+||+.|.+..
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            456788888887776653    1         345668899999999999999998875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.99  E-value=0.00064  Score=53.88  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+-++|++|+|||+||+.|.+..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678899999999999999999875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.99  E-value=0.0011  Score=53.07  Aligned_cols=38  Identities=29%  Similarity=0.343  Sum_probs=28.4

Q ss_pred             HHHHHHHhhccC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIADY--RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~~--~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+..++...  ....+-|+|++|+||||||+.+.+..
T Consensus        22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            344444544433  35689999999999999999999865

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.99  E-value=0.00047  Score=50.84  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..-.|+|+|.+|+|||||++.+.+..
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC
Confidence            35689999999999999999998753

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.98  E-value=0.00099  Score=54.28  Aligned_cols=44  Identities=23%  Similarity=0.188  Sum_probs=34.9

Q ss_pred             ccchHHHHHHHHHhhc-------------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          154 TVGFDSMLDEVWGHIA-------------D--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       154 ~~g~~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++|.+..++.+...+.             .  .....+-++|++|+|||+||+.|.+..
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            5788888888777762             1  134678899999999999999998865

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.98  E-value=0.00061  Score=54.70  Aligned_cols=44  Identities=25%  Similarity=0.294  Sum_probs=35.7

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..+..+...+..  ..-+-++|++|+|||+||+.+.+..
T Consensus        27 ~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             cceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3467888888888887764  3467889999999999999998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.98  E-value=0.00049  Score=56.30  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            467899999999999999999998743

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.98  E-value=0.00048  Score=56.27  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            467899999999999999999998743

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.98  E-value=0.00042  Score=56.51  Aligned_cols=27  Identities=33%  Similarity=0.523  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998743

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.97  E-value=0.00076  Score=53.78  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=34.9

Q ss_pred             cccchHHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.......+...+..  ....-+-|+|..|+|||+||+.|++..
T Consensus         3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence            467877777777777653  344556799999999999999999854

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.96  E-value=0.00049  Score=55.21  Aligned_cols=25  Identities=32%  Similarity=0.683  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ++.+||+|.|-|||||||.+-.+--
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~   70 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSA   70 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHH
Confidence            4789999999999999999887744

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0011  Score=55.57  Aligned_cols=46  Identities=26%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.|.+..++.|...+.    .         ..++=|-++|++|+|||+||+.|.+..
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            346788887777766553    1         345778899999999999999999876

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.95  E-value=0.00071  Score=56.29  Aligned_cols=26  Identities=19%  Similarity=0.333  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|.+|+|||||.+.+.+-
T Consensus        67 ~~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           67 SSVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence            46679999999999999999999883

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.95  E-value=0.00068  Score=57.80  Aligned_cols=43  Identities=14%  Similarity=0.109  Sum_probs=35.2

Q ss_pred             cccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.+..++.+...+.  ...-+-++|++|+|||+||+.+.+..
T Consensus        23 ~ivGq~~~i~~l~~al~--~~~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             TCSSCHHHHHHHHHHHH--HTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             hhHHHHHHHHHHHHHHh--cCCeeEeecCchHHHHHHHHHHHHHH
Confidence            36788888888887776  34567899999999999999998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.95  E-value=0.00057  Score=52.82  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....+|+|.|+.|+||||+++.+-.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.94  E-value=0.00055  Score=56.20  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            477899999999999999999998743

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.94  E-value=0.00055  Score=56.31  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|..-.
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            467899999999999999999998743

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.93  E-value=0.00071  Score=50.76  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|.|+|+.|+||||+++.+....
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            367899999999999999999997754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.93  E-value=0.0011  Score=53.98  Aligned_cols=27  Identities=37%  Similarity=0.449  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.|.+..
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            478899999999999999999998865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.92  E-value=0.00042  Score=56.35  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            467899999999999999999998743

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.92  E-value=0.0013  Score=55.82  Aligned_cols=46  Identities=24%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             ccccchHHHHHHHHHhh---cc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHI---AD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++++...+   .+         .-.+-+-++|++|+||||||+.|.+..
T Consensus        16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45788877666665543   22         123447799999999999999999865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.91  E-value=0.00051  Score=56.39  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            467899999999999999999998743

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.91  E-value=0.00077  Score=58.86  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=36.9

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..++.+...+.  ....+.|+|++|+||||||+.|.+..
T Consensus        41 ~~i~G~~~~l~~l~~~i~--~g~~vll~Gp~GtGKTtlar~ia~~l   84 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAAN--QKRHVLLIGEPGTGKSMLGQAMAELL   84 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred             ceEECchhhHhhcccccc--CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            457898888888877776  44689999999999999999998754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.91  E-value=0.00097  Score=55.59  Aligned_cols=28  Identities=29%  Similarity=0.216  Sum_probs=24.5

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          170 DYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .....+++|+|++|+|||||++.+.+..
T Consensus       164 ~~~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          164 KRPHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            3567799999999999999999998754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.90  E-value=0.00062  Score=53.67  Aligned_cols=24  Identities=33%  Similarity=0.659  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHH
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ....+|+|.|+.|+||||+++.+-
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            356799999999999999999986

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.88  E-value=0.00038  Score=56.77  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998743

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.88  E-value=0.00074  Score=53.97  Aligned_cols=27  Identities=37%  Similarity=0.427  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|.|+|++|+||||++..+....
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            357899999999999999999998765

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.87  E-value=0.00061  Score=54.87  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=33.4

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..+..+...+......-+-++|+.|+|||+||+.+.+..
T Consensus        24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~   69 (350)
T 1g8p_A           24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL   69 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence            4578887766555444433333348899999999999999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.86  E-value=0.001  Score=53.03  Aligned_cols=33  Identities=33%  Similarity=0.432  Sum_probs=26.6

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++|...+   ...+++++|++|+|||||++.+. ..
T Consensus       156 i~~L~~~l---~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          156 IDELVDYL---EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             HHHHHHHT---TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             HHHHHhhc---cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            45566655   45789999999999999999998 43

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.84  E-value=0.0007  Score=52.49  Aligned_cols=25  Identities=36%  Similarity=0.424  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+|.|+|+.|+||||+++.+....
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            6789999999999999999997643

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0013  Score=54.42  Aligned_cols=46  Identities=24%  Similarity=0.322  Sum_probs=35.4

Q ss_pred             ccccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++.|.+..+++|...+.    .         ..++=|=++|++|+|||+||+.|.+..
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~  206 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT  206 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence            346788887777766643    1         345667789999999999999998875

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.83  E-value=0.0014  Score=55.73  Aligned_cols=46  Identities=26%  Similarity=0.304  Sum_probs=36.8

Q ss_pred             ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|..++..             ....-+-|+|+.|+|||+||+.|.+..
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            4578988888888877642             344568899999999999999998764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.83  E-value=0.0016  Score=53.23  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+-++|+.|+||||||+.+.+..
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999998764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.82  E-value=0.00075  Score=49.23  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .+..|+|.+|.|||||+..|+-
T Consensus        27 g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999999964

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.82  E-value=0.001  Score=50.49  Aligned_cols=27  Identities=37%  Similarity=0.479  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.+||-|.|++|+||||.|+.+..+.
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            378899999999999999999998765

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.80  E-value=0.001  Score=50.63  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...++.|+|++|+|||||+..+...
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            6789999999999999999998875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.79  E-value=0.00074  Score=58.15  Aligned_cols=27  Identities=44%  Similarity=0.671  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            367899999999999999999998743

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.79  E-value=0.0011  Score=54.16  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+..
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            355699999999999999999987654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.79  E-value=0.00095  Score=50.32  Aligned_cols=35  Identities=29%  Similarity=0.304  Sum_probs=26.7

Q ss_pred             HHHHHHH-hhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          160 MLDEVWG-HIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       160 ~~~~l~~-~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .++.+.. -+.  ...++.|+|++|+|||||++.+...
T Consensus        11 ~Ld~~~~ggi~--~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           11 DFDKLIQGGIP--QGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             HHHGGGTTSEE--TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHhcCCCc--CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3445543 344  5689999999999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.78  E-value=0.00085  Score=55.39  Aligned_cols=26  Identities=35%  Similarity=0.455  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|+|||||++.|..-
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCC
Confidence            57889999999999999999999763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.77  E-value=0.0011  Score=50.91  Aligned_cols=27  Identities=22%  Similarity=0.111  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|.|.|+.|+||||+++.+....
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            467799999999999999999997654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.77  E-value=0.0018  Score=52.75  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=27.6

Q ss_pred             HHHHHHhhc--cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          161 LDEVWGHIA--DYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       161 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...++..+.  ..+..+|+|+|.+|+|||||+..+...
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~  102 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH  102 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            444454444  356789999999999999999998654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.77  E-value=0.0015  Score=54.82  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=28.2

Q ss_pred             HHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+.......+ ...+-|+|++|+||||||+.+.+..
T Consensus       116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3344444444333 6789999999999999999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.77  E-value=0.00078  Score=55.05  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++|+|.+|.|||||++.+.+-.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999997754

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.76  E-value=0.0019  Score=54.41  Aligned_cols=46  Identities=22%  Similarity=0.226  Sum_probs=34.6

Q ss_pred             ccccchHHHHHHHHHhh---ccC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHI---ADY--RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L---~~~--~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.+..++   ...  ..+-+-++|++|+|||+||+.+.+..
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l   87 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL   87 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence            56889888777554443   322  23568899999999999999998875

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.76  E-value=0.0019  Score=55.69  Aligned_cols=46  Identities=30%  Similarity=0.494  Sum_probs=35.0

Q ss_pred             ccccchHHHHHHHHHhhc------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA------DYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.++....+...+.      +-...++.++|++|+||||||+.|.+..
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            346788777776655432      1246789999999999999999998765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.74  E-value=0.001  Score=54.72  Aligned_cols=27  Identities=30%  Similarity=0.112  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+..
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999998754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.0016  Score=54.67  Aligned_cols=45  Identities=22%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             cccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++.|.+..+++|...+.    .         ..++=|-++|++|+|||+||+.|.++.
T Consensus       210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~  267 (467)
T 4b4t_H          210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT  267 (467)
T ss_dssp             SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence            46688888888776542    1         356778899999999999999998865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.71  E-value=0.0012  Score=53.51  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+..+++|+|++|+|||||.+.+...
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            57889999999999999999999754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.71  E-value=0.00099  Score=57.35  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|.|||||++.+..-.
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            66899999999999999999998743

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.69  E-value=0.00079  Score=56.16  Aligned_cols=25  Identities=36%  Similarity=0.393  Sum_probs=21.9

Q ss_pred             CCeE--EEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRI--IGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~v--i~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...+  ++|+|.+|+|||||++.+++.
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            5667  999999999999999999874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.69  E-value=0.0024  Score=48.69  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.|.|+.|+||||+++.+.+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999999876

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.68  E-value=0.001  Score=57.25  Aligned_cols=26  Identities=38%  Similarity=0.635  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.|++-.
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56899999999999999999999854

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.00095  Score=56.34  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            467899999999999999999998753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.68  E-value=0.0023  Score=54.58  Aligned_cols=46  Identities=22%  Similarity=0.263  Sum_probs=32.6

Q ss_pred             ccccchHHHHHHHHHh---hccC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGH---IADY---------RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~---L~~~---------~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..+.++...   +.+.         -.+=+.|+|++|+||||||+.|.+..
T Consensus        31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4578877666555544   3221         12338999999999999999998865

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.0026  Score=46.45  Aligned_cols=25  Identities=32%  Similarity=0.280  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....|.|+|..|+|||||++.+.+.
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.67  E-value=0.0015  Score=52.05  Aligned_cols=34  Identities=29%  Similarity=0.588  Sum_probs=27.0

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++..++   ...+++++|++|+|||||++.+....
T Consensus       160 v~~lf~~l---~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          160 IEELKEYL---KGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             HHHHHHHH---SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HHHHHHHh---cCCeEEEECCCCCcHHHHHHHhcccc
Confidence            45555555   45689999999999999999998643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.67  E-value=0.0013  Score=52.95  Aligned_cols=27  Identities=44%  Similarity=0.642  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|+|+|.+|+||||++..+....
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999987654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.67  E-value=0.0013  Score=54.07  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+..
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999997754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.65  E-value=0.0013  Score=51.91  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|.+|+|||||++.+....
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999998765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.0011  Score=57.80  Aligned_cols=27  Identities=41%  Similarity=0.626  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.|..-.
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            367899999999999999999998743

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.65  E-value=0.00099  Score=54.46  Aligned_cols=27  Identities=41%  Similarity=0.479  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            366799999999999999999998754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.0025  Score=53.10  Aligned_cols=45  Identities=29%  Similarity=0.410  Sum_probs=34.9

Q ss_pred             cccchHHHHHHHHHhhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIA----D---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++.|.++.+++|...+.    .         ..++=|-++|++|+|||+||+.|.++.
T Consensus       183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~  240 (437)
T 4b4t_I          183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT  240 (437)
T ss_dssp             GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred             ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence            45678777777766543    1         345678899999999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.63  E-value=0.0012  Score=57.71  Aligned_cols=26  Identities=38%  Similarity=0.635  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.+.+-.
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56899999999999999999998854

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.62  E-value=0.00064  Score=50.58  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....|+|+|.+|+|||||++.+.+.
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46678999999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.61  E-value=0.0011  Score=57.06  Aligned_cols=26  Identities=38%  Similarity=0.653  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.+..-.
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56799999999999999999998753

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.60  E-value=0.0015  Score=51.89  Aligned_cols=26  Identities=35%  Similarity=0.377  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|+++|.+|+||||++..+....
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999998765

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.58  E-value=0.0021  Score=52.47  Aligned_cols=26  Identities=38%  Similarity=0.424  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.+....
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            34689999999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.56  E-value=0.0013  Score=57.51  Aligned_cols=26  Identities=35%  Similarity=0.585  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.+..-.
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            56899999999999999999998743

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.56  E-value=0.0022  Score=53.72  Aligned_cols=46  Identities=22%  Similarity=0.248  Sum_probs=34.9

Q ss_pred             ccccchHHHHHHHHHhhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD--------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..+..|...+.+              ...+-|-++|+.|+||||||+.+....
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l   74 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   74 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence            3467888877777666532              134568899999999999999998765

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.55  E-value=0.0015  Score=55.37  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .. .+++|+|++|+|||||++.+..-.
T Consensus        28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           28 DE-LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence            35 899999999999999999998743

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.53  E-value=0.001  Score=53.71  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|.|||||++.+.+-.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55699999999999999999998754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.53  E-value=0.0016  Score=50.98  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++.|+|++|+|||||+..+....
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999988654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.49  E-value=0.0019  Score=52.47  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +..+|+|+|.+|+|||||.+.+.+.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0016  Score=56.81  Aligned_cols=24  Identities=42%  Similarity=0.636  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|+|++|+|||||++.|..-.
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCC
Confidence            689999999999999999998753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.49  E-value=0.0049  Score=51.63  Aligned_cols=26  Identities=42%  Similarity=0.586  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.+|.++|.+|+||||++..+....
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            57899999999999999999987655

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.49  E-value=0.0018  Score=54.34  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.|.+..
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            477899999999999999999998864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.46  E-value=0.0033  Score=50.19  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhccC---CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          158 DSMLDEVWGHIADY---RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       158 ~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ......+..++...   ...-+-++|+.|+|||+||+.+.+..
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            33444555565531   25788899999999999999999876

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.44  E-value=0.0017  Score=56.49  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+.+-.
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            577899999999999999999997754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.42  E-value=0.0045  Score=51.74  Aligned_cols=26  Identities=42%  Similarity=0.407  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.++|.+|+||||++..+....
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999987654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.41  E-value=0.0018  Score=56.23  Aligned_cols=27  Identities=22%  Similarity=0.420  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+.+-.
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            577899999999999999999997754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.41  E-value=0.0023  Score=47.27  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+...|.++|.+|+|||||++.+.+.
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            34556899999999999999998753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.40  E-value=0.0021  Score=46.94  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+...|.|+|..|+|||||++.+.+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46678999999999999999999764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.37  E-value=0.0029  Score=44.91  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHH
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ..+..|+|++|.|||||...|+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4688999999999999999986

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.37  E-value=0.0045  Score=46.46  Aligned_cols=37  Identities=11%  Similarity=0.100  Sum_probs=26.5

Q ss_pred             HHHHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+..++.. ++..-+-|+|++|+||||+|..+.+..
T Consensus        45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            4444444442 234579999999999999998887764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.36  E-value=0.0051  Score=51.77  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=32.0

Q ss_pred             chHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          156 GFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       156 g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....+..+..++.+.+ ..+-|.|.+|+||||++..+....
T Consensus        29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45566677777766433 389999999999999999988765

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.36  E-value=0.0024  Score=53.18  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|-|+|+.|+||||+++.+....
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            467899999999999999999997653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.36  E-value=0.0024  Score=47.36  Aligned_cols=35  Identities=23%  Similarity=0.167  Sum_probs=21.3

Q ss_pred             HHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          162 DEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       162 ~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +.+.......+.-.|.|+|..|+|||||++.+.+.
T Consensus        19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -----------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            33333334445668899999999999999988764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.33  E-value=0.0025  Score=46.43  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....|.|+|..|+|||||++.+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            4567899999999999999999865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.32  E-value=0.0034  Score=53.65  Aligned_cols=26  Identities=23%  Similarity=0.060  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....++|+|+.|+|||||++.+.+-.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45579999999999999999997643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.31  E-value=0.0027  Score=46.66  Aligned_cols=29  Identities=34%  Similarity=0.354  Sum_probs=23.6

Q ss_pred             hccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          168 IADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       168 L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +.....-.|.|+|..|+|||||++.+.+.
T Consensus        24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           24 IFGKKQMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             TTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             hccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence            34455667999999999999999998653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.30  E-value=0.0029  Score=51.09  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.|+|+.|+|||||+..+....
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            45699999999999999999998754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.30  E-value=0.0028  Score=51.34  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+..+|+|+|.+|+|||||++.+...
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            57889999999999999999998654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.29  E-value=0.0019  Score=53.77  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhhh
Q 041747          176 IGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       176 i~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      |+|+|.+|+|||||++.+.+..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            4999999999999999998754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.28  E-value=0.0018  Score=52.85  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      --|+|+|.+|+|||||++.+++.
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCC
Confidence            34799999999999999998764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.26  E-value=0.0019  Score=55.67  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|.|+|++|+|||||++.+....
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhh
Confidence            356899999999999999999998865

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.24  E-value=0.0029  Score=52.97  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.++|.+|+||||++..+-...
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999987654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.24  E-value=0.0027  Score=51.57  Aligned_cols=37  Identities=30%  Similarity=0.320  Sum_probs=27.8

Q ss_pred             HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++.. .=....++.|+|++|+|||||+..+....
T Consensus       119 ~LD~lL~g-gi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          119 SLDKLLGG-GIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HHHHHHTS-SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhcC-CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44555431 11467899999999999999999998753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.21  E-value=0.0027  Score=46.56  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +...|.++|.+|+|||||++.+.+.
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4457899999999999999998863

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.21  E-value=0.0076  Score=48.15  Aligned_cols=46  Identities=22%  Similarity=0.159  Sum_probs=31.5

Q ss_pred             HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747          160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV  210 (211)
Q Consensus       160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv  210 (211)
                      .++.++.-+.  ...++-|.|.+|+|||||+..+..+. -.++  ..++|+
T Consensus        57 ~LD~~lgGl~--~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~  102 (315)
T 3bh0_A           57 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLH  102 (315)
T ss_dssp             HHHHHHSSBC--TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEE
T ss_pred             HHHhhcCCCC--CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEE
Confidence            4555554343  67899999999999999999987654 2222  455554

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.21  E-value=0.0054  Score=52.29  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.|+|.+|+|||||+..+....
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999987543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.20  E-value=0.0028  Score=46.33  Aligned_cols=26  Identities=35%  Similarity=0.414  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..-.|.|+|..|+|||||++.+.+..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34578999999999999999988643

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.20  E-value=0.0055  Score=55.07  Aligned_cols=46  Identities=26%  Similarity=0.332  Sum_probs=33.4

Q ss_pred             ccccchHHHHHHHHHhh----cc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHI----AD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L----~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++.|.+..+++|.+.+    ..         ..++=|-++|++|+|||+||+.|.++.
T Consensus       204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            34567766666555543    22         245678899999999999999999865

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.17  E-value=0.0085  Score=49.35  Aligned_cols=34  Identities=21%  Similarity=0.121  Sum_probs=26.7

Q ss_pred             HHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          163 EVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       163 ~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .++..+.. .....++|+|..|+|||||++.|-+.
T Consensus       163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            44444443 46789999999999999999998764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.17  E-value=0.0034  Score=47.87  Aligned_cols=26  Identities=23%  Similarity=0.171  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            56689999999999999999998754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.17  E-value=0.0012  Score=52.69  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++|+|++|+|||||++.+....
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccc
Confidence            45799999999999999999997643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.14  E-value=0.0021  Score=56.03  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+.+-.
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            577899999999999999999997643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.14  E-value=0.0019  Score=54.11  Aligned_cols=26  Identities=42%  Similarity=0.506  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.|+|.+|+||||++..+....
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999987654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.13  E-value=0.0031  Score=46.15  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            4457899999999999999999764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.12  E-value=0.0035  Score=45.80  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..-.|.|+|..|+|||||++.+.+..
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            45678999999999999999988654

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.12  E-value=0.0018  Score=56.26  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+.+-.
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            578899999999999999999987643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.12  E-value=0.0042  Score=47.19  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=24.4

Q ss_pred             HHHHH-HhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          161 LDEVW-GHIADYRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       161 ~~~l~-~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      +++++ .-+.  ...++.|+|.+|+|||||+..+..
T Consensus        12 LD~~l~gGl~--~G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           12 VDEILHGGIP--ERNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             HHHHTTTSEE--TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHcCCCCC--CCcEEEEECCCCCCHHHHHHHHHH
Confidence            34443 3344  677999999999999999877644

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.11  E-value=0.0023  Score=49.69  Aligned_cols=27  Identities=26%  Similarity=0.317  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+...|.|.|..|+||||+++.+....
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            366899999999999999999987654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.10  E-value=0.0065  Score=50.86  Aligned_cols=43  Identities=26%  Similarity=0.447  Sum_probs=31.9

Q ss_pred             cchHHHHHHHHHhhcc-----------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIAD-----------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~-----------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .|.++..+.+...+.+           .....|+|+|.+|+|||||.+.+.+..
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            3566666666665532           123589999999999999999998754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.08  E-value=0.0053  Score=51.22  Aligned_cols=26  Identities=35%  Similarity=0.377  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.++|++|+||||++..+....
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999998765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.06  E-value=0.0048  Score=45.28  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...--|.|+|..|+|||||++.+.+.
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999998765

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.05  E-value=0.0026  Score=50.55  Aligned_cols=26  Identities=38%  Similarity=0.424  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+|+++|.+|+||||++..+....
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999987654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.05  E-value=0.0028  Score=46.74  Aligned_cols=23  Identities=35%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ..-.|.|+|.+|+|||||++.+.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            55689999999999999999984

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.04  E-value=0.0038  Score=46.03  Aligned_cols=26  Identities=31%  Similarity=0.387  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|.|+|..|+|||||++.+.+..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            56678999999999999999988753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.04  E-value=0.0037  Score=46.57  Aligned_cols=25  Identities=28%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.03  E-value=0.0046  Score=46.68  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....|.|+|..|+|||||++.+.+.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.02  E-value=0.0039  Score=45.48  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcC
Confidence            4567899999999999999998753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.02  E-value=0.0039  Score=45.43  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4567999999999999999998754

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.01  E-value=0.0048  Score=50.36  Aligned_cols=22  Identities=41%  Similarity=0.693  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .+.+|+|++|.|||||...|+.
T Consensus        27 g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            4999999999999999999985

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.01  E-value=0.0041  Score=57.02  Aligned_cols=25  Identities=40%  Similarity=0.717  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....+++|+|++|.|||||++.|.+
T Consensus       459 ~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          459 KRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4778999999999999999999985

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.99  E-value=0.0041  Score=45.52  Aligned_cols=26  Identities=35%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..-.|.|+|..|+|||||++.+.+..
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            45678999999999999999998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.99  E-value=0.0042  Score=46.12  Aligned_cols=25  Identities=36%  Similarity=0.446  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            4567899999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.98  E-value=0.0027  Score=55.21  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+.+-.
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            578899999999999999999987643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.98  E-value=0.0039  Score=46.04  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            4557889999999999999998754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.98  E-value=0.0047  Score=50.22  Aligned_cols=36  Identities=33%  Similarity=0.452  Sum_probs=27.1

Q ss_pred             HHHHHHH--hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWG--HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~--~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++.  -+.  ..+++.|+|.+|+|||||+..+....
T Consensus        48 ~LD~~Lg~GGl~--~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           48 SLDVALGIGGLP--RGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             HHHHHTSSSSEE--TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhccCCcc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4555544  232  67899999999999999999887553

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.97  E-value=0.0041  Score=45.79  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +..-.|.|+|..|+|||||++.+.+.
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            35678999999999999999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.91  E-value=0.0044  Score=46.30  Aligned_cols=25  Identities=40%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3457899999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.90  E-value=0.0047  Score=45.82  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....|.|+|..|+|||||++.+.+.
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            3457899999999999999999764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.90  E-value=0.0057  Score=49.37  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ...+..|+|++|.|||||+..|+
T Consensus        22 ~~~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            45788999999999999999874

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.87  E-value=0.0038  Score=45.72  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .-.|.|+|..|+|||||++.+.+.
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            446889999999999999999764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.86  E-value=0.005  Score=50.16  Aligned_cols=26  Identities=35%  Similarity=0.457  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++.|+|++|+|||||+..+....
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999988764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.86  E-value=0.0047  Score=50.52  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+|+|+|.+|+|||||.+.+.+..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            56779999999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.85  E-value=0.0063  Score=46.91  Aligned_cols=25  Identities=28%  Similarity=0.203  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....|+|+|..|+|||||.+.+.+.
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            5567999999999999999999654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.85  E-value=0.0051  Score=52.70  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKL  193 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i  193 (211)
                      ...+++|+|++|+|||||++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            7789999999999999999994

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.85  E-value=0.0056  Score=51.03  Aligned_cols=24  Identities=17%  Similarity=0.443  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ...+.+|+|++|.|||||+..|+.
T Consensus        25 ~~~~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           25 ESNFTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            467999999999999999999985

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.84  E-value=0.003  Score=57.84  Aligned_cols=27  Identities=30%  Similarity=0.469  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+.+-.
T Consensus       697 ~~GeivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          697 SLSSRIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             ETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998743

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.80  E-value=0.0074  Score=45.04  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHH
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ..+..|+|++|.||||+...|+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHH
Confidence            4688999999999999999875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.79  E-value=0.0056  Score=45.26  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhC
Confidence            4567999999999999999998754

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.78  E-value=0.011  Score=52.86  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=35.2

Q ss_pred             cccchHHHHHHHHHhhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.+..++.+...+..         .....+-++|+.|+|||+||+.+.+..
T Consensus       492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            478888888887777652         112368899999999999999998764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.78  E-value=0.007  Score=50.10  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ...++.|+|.+|+|||||+..+.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            67899999999999999999764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.77  E-value=0.0056  Score=45.17  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....|.|+|..|+|||||++.+.+.
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457899999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.77  E-value=0.0034  Score=46.98  Aligned_cols=27  Identities=26%  Similarity=0.227  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .....|.|+|..|+|||||++.+.+..
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.75  E-value=0.011  Score=46.02  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=27.7

Q ss_pred             HHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|..++.  +. ..+.++|.+|+|||||.+.+.+..
T Consensus        88 i~~L~~~l~--~~~~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A           88 KVLLKKLSF--DRLARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             HHHHHHHCC--CTTCEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             HHHHHHHHH--HhhhheEEeCCCCCCHHHHHHHHhccc
Confidence            556666665  33 678999999999999999998754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.72  E-value=0.012  Score=45.54  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.-.|+++|..|+|||||++.+.+..
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45679999999999999999998753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.71  E-value=0.0085  Score=45.92  Aligned_cols=26  Identities=23%  Similarity=0.493  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.|.|+.|+||||+++.+....
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999998876

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.69  E-value=0.0058  Score=45.51  Aligned_cols=25  Identities=32%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcC
Confidence            4457899999999999999998764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.67  E-value=0.0079  Score=49.15  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 041747          174 RIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      .+..|+|++|.|||||...|+
T Consensus        24 g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999986

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.67  E-value=0.008  Score=48.24  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+++-|+|++|+||||||..+...
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            3467789999999999999998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.67  E-value=0.0065  Score=45.43  Aligned_cols=25  Identities=28%  Similarity=0.246  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|.|+|..|+|||||++.+.+.
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcC
Confidence            4457889999999999999998765

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.65  E-value=0.0041  Score=54.30  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+..|+|+|.+|+|||||++.|.+-
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCC
Confidence            4567999999999999999999874

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.61  E-value=0.007  Score=45.47  Aligned_cols=24  Identities=33%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....|.|+|.+|+|||||++.+.+
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999999864

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=95.60  E-value=0.0026  Score=52.63  Aligned_cols=21  Identities=24%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      +++|+|.+|.|||||++.|+-
T Consensus        62 ~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999964

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.59  E-value=0.0052  Score=49.22  Aligned_cols=21  Identities=24%  Similarity=0.643  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 041747          174 RIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      .+.+|+|++|.|||||+..|+
T Consensus        25 g~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           25 RVTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHH
Confidence            399999999999999999998

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.59  E-value=0.0068  Score=46.20  Aligned_cols=26  Identities=38%  Similarity=0.616  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|.|-|+.|+||||+++.+.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998876

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.57  E-value=0.014  Score=45.41  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..-.|.++|..|+|||||.+.+.+..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            35688999999999999999998754

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.57  E-value=0.018  Score=49.13  Aligned_cols=27  Identities=22%  Similarity=0.015  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+|-+.|+.|+||||+++.+....
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L  419 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTF  419 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHH
Confidence            466899999999999999999998876

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.56  E-value=0.017  Score=46.31  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...++-|+|.+|+|||||+..+...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5679999999999999999998765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.53  E-value=0.0022  Score=47.44  Aligned_cols=29  Identities=28%  Similarity=0.239  Sum_probs=22.9

Q ss_pred             hccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          168 IADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       168 L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +.+.+.-.|.|+|..|+|||||++.+.+.
T Consensus        25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            34445667899999999999999887653

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=95.53  E-value=0.006  Score=53.16  Aligned_cols=44  Identities=14%  Similarity=0.062  Sum_probs=30.6

Q ss_pred             ccchHHHHHHHHHhhccCCCe-----------EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          154 TVGFDSMLDEVWGHIADYRCR-----------IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       154 ~~g~~~~~~~l~~~L~~~~~~-----------vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++|.+..+..+...|.....+           -+-++|++|+|||+||+.+.+..
T Consensus       297 I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~  351 (595)
T 3f9v_A          297 IYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA  351 (595)
T ss_dssp             TSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred             hcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence            567776665555544422111           47889999999999999997753

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.53  E-value=0.0091  Score=54.20  Aligned_cols=45  Identities=31%  Similarity=0.338  Sum_probs=34.9

Q ss_pred             cccchHHHHHHHHHhhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.+..+..+...+..         .....+-++|+.|+|||+||+.+.+..
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            468888888877776642         123578899999999999999998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.52  E-value=0.009  Score=48.56  Aligned_cols=26  Identities=35%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....|+++|.+|+|||||.+.+.+.
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.51  E-value=0.013  Score=46.47  Aligned_cols=26  Identities=19%  Similarity=0.256  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|+|+|..|+|||||.+.+.+..
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence            56789999999999999999997653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.49  E-value=0.0093  Score=44.50  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+.|.|.|+.|+||||||..+...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            5677899999999999999998764

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.46  E-value=0.011  Score=50.53  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|-++|+.|.||||+++.+....
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999996543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.44  E-value=0.0012  Score=50.46  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++|+|++|.|||||++.|..-.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            45678999999999999987643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.39  E-value=0.0065  Score=50.55  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....++|+|++|+|||||++.+.+.
T Consensus       156 ~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          156 LIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             CSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            5678999999999999999999765

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.39  E-value=0.02  Score=51.12  Aligned_cols=45  Identities=22%  Similarity=0.235  Sum_probs=34.6

Q ss_pred             cccchHHHHHHHHHhhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIAD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.+..++.+...+..         .....+-++|+.|+|||+||+.+.+..
T Consensus       459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            467888888777776642         123478899999999999999998764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.37  E-value=0.011  Score=53.28  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +...+++|+|++|.|||||++.|..-
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            45689999999999999999998753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.36  E-value=0.011  Score=50.67  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|.+|+|||||++.+....
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999998765

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.31  E-value=0.017  Score=48.51  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=28.4

Q ss_pred             HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++.-+.  ...++.|.|.+|+|||||+..+....
T Consensus       192 ~LD~~~gGl~--~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          192 ELDRMTSGFQ--RSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             HHHHHHSSBC--TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHhhcCCCC--CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4566654343  67799999999999999999987765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.30  E-value=0.023  Score=44.65  Aligned_cols=26  Identities=38%  Similarity=0.498  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..-.++++|.+|+|||||.+.+.+..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCc
Confidence            34578999999999999999998753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.29  E-value=0.014  Score=49.33  Aligned_cols=27  Identities=30%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|-++|+.|+||||+++.+....
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999987653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.24  E-value=0.0095  Score=43.26  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ..-.|.|+|..|+|||||++.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            445699999999999999999854

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.22  E-value=0.0057  Score=53.99  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHH
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ....+++|+|++|.|||||++.+.
T Consensus       346 ~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          346 PLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cCCCEEEEEeeCCCCHHHHHHHHH
Confidence            467899999999999999997653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.21  E-value=0.0083  Score=52.95  Aligned_cols=20  Identities=35%  Similarity=0.634  Sum_probs=18.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHH
Q 041747          171 YRCRIIGLYGIGGVGKTTLL  190 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa  190 (211)
                      ....+++|+|++|.|||||+
T Consensus        42 ~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           42 PRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             ETTSEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHh
Confidence            47789999999999999997

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=95.20  E-value=0.012  Score=52.82  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+++|+|++|.|||||++.+..-
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhh
Confidence            679999999999999999998753

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.20  E-value=0.011  Score=48.09  Aligned_cols=36  Identities=33%  Similarity=0.424  Sum_probs=27.0

Q ss_pred             HHHHHHH--hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWG--HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~--~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++.  -+.  ..+++-|.|.+|+||||||..+....
T Consensus        50 ~LD~~Lg~GGl~--~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           50 SLDIALGAGGLP--MGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             HHHHHTSSSSEE--TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhccCCcc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4555543  232  66799999999999999999887654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.19  E-value=0.01  Score=56.14  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+..-.
T Consensus      1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A         1057 KKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp             CSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            577899999999999999999998743

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.18  E-value=0.027  Score=47.00  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=33.7

Q ss_pred             cchHHHHHHHHHhhcc-------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIAD-------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~-------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .|.++-.+.+...+.+       +....|+|+|.+|+|||||.+.+.+..
T Consensus       150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence            3667777777777742       245689999999999999999998754

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.17  E-value=0.023  Score=45.59  Aligned_cols=40  Identities=13%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          158 DSMLDEVWGHIADYR-CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       158 ~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+.+...+..++ ...+-++|+.|+||||+|+.+....
T Consensus         8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l   48 (334)
T 1a5t_A            8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL   48 (334)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence            445667777776555 4568899999999999999987653

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=95.12  E-value=0.037  Score=45.61  Aligned_cols=37  Identities=22%  Similarity=0.148  Sum_probs=28.6

Q ss_pred             HHHHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      --.++..|.. .....++|+|.+|+|||||++.|.+..
T Consensus       162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i  199 (427)
T 3l0o_A          162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI  199 (427)
T ss_dssp             HHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             cchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence            3345555554 467899999999999999999988754

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.08  E-value=0.017  Score=50.58  Aligned_cols=26  Identities=35%  Similarity=0.462  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.+.|+.|+||||+++.+....
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999997754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.04  E-value=0.018  Score=49.89  Aligned_cols=26  Identities=23%  Similarity=0.224  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+|.|.|+.|+||||+|+.+-...
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999997764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.01  E-value=0.03  Score=45.20  Aligned_cols=25  Identities=28%  Similarity=0.235  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...++-|+|.+|+|||||+..+...
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999999998765

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=94.91  E-value=0.018  Score=47.05  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             CCCeEEEEEc-CCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYG-IGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G-~~GiGKTTLa~~i~~~  196 (211)
                      .+.++|+|+| -||+||||+|-.+-..
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~  167 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIA  167 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHH
Confidence            4679999995 8999999999887543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=94.88  E-value=0.035  Score=43.23  Aligned_cols=37  Identities=19%  Similarity=0.288  Sum_probs=27.8

Q ss_pred             HHHHHHHhhccC--CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          160 MLDEVWGHIADY--RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       160 ~~~~l~~~L~~~--~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      -..-+..||...  +..-|-++|++|+|||+||..|.+.
T Consensus        89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            344466666532  2457999999999999999999874

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.88  E-value=0.019  Score=46.99  Aligned_cols=36  Identities=39%  Similarity=0.454  Sum_probs=26.6

Q ss_pred             HHHHHHH--hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWG--HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~--~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++.  -+.  ..+++-|.|.+|+||||||..+....
T Consensus        61 ~LD~~Lg~GGl~--~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           61 SLDLALGVGGIP--RGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             HHHHHTSSSSEE--TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcc--CCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            4555543  232  56789999999999999998876654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=94.86  E-value=0.012  Score=53.59  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHH
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      +...+++|+|++|.|||||.+.+.
T Consensus       671 ~~g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          671 DSERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             TSCCEEEEESCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCchHHHHHHHH
Confidence            356899999999999999999875

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=94.79  E-value=0.016  Score=47.82  Aligned_cols=25  Identities=36%  Similarity=0.598  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....|+|+|.+|+|||||.+.+.+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4456899999999999999999865

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.79  E-value=0.018  Score=45.09  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|+|+|..|+|||||++.+.+..
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence            56789999999999999999998754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=94.77  E-value=0.018  Score=52.67  Aligned_cols=23  Identities=17%  Similarity=0.120  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHH
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKL  193 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i  193 (211)
                      +...+++|+|++|.|||||++.+
T Consensus       660 ~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          660 DKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TTBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHH
Confidence            35689999999999999999998

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=94.76  E-value=0.014  Score=55.27  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|.|||||++.+.+-.
T Consensus       414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~  440 (1284)
T 3g5u_A          414 KSGQTVALVGNSGCGKSTTVQLMQRLY  440 (1284)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            578899999999999999999997643

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.75  E-value=0.028  Score=47.37  Aligned_cols=39  Identities=36%  Similarity=0.579  Sum_probs=27.8

Q ss_pred             cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .|.. ..+.+...+   +...++|+|.+|+|||||++.+....
T Consensus       137 TGir-~ID~L~pi~---kGq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          137 TGIK-VVDLLAPYI---KGGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             CSCH-HHHHHSCEE---TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             ccch-HHHHHhhhc---cCCEEEEECCCCCCccHHHHHHHhhh
Confidence            4554 344443333   44579999999999999999987764

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.69  E-value=0.056  Score=45.28  Aligned_cols=36  Identities=19%  Similarity=0.154  Sum_probs=27.8

Q ss_pred             HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++.-|.  ...++-|.|.+|+|||||+-.+..+.
T Consensus       186 ~LD~~lgGl~--~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          186 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             HHHHHHSSBC--SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCC--CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            4555554343  67799999999999999999887664

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.66  E-value=0.046  Score=47.04  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+|.+.|+.|+||||+++.+....
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L  396 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATML  396 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence            356799999999999999999997754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.52  E-value=0.04  Score=44.52  Aligned_cols=36  Identities=17%  Similarity=0.171  Sum_probs=27.8

Q ss_pred             HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++.-|.  ...++-|.|.+|+|||||+..+..+.
T Consensus        35 ~LD~~~gGl~--~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           35 QLDNYTSGFN--KGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             HHHHHHCSBC--TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC--CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4555554343  66799999999999999999987664

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=94.51  E-value=0.022  Score=43.96  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=21.6

Q ss_pred             CCCeEEEEE-cCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLY-GIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~-G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++|+|+ |-||+||||++-.+-...
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~l   52 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLL   52 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHH
Confidence            468899997 567899999999886654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=94.50  E-value=0.022  Score=52.60  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHH
Q 041747          173 CRIIGLYGIGGVGKTTLLKKL  193 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i  193 (211)
                      ..+++|+|++|.|||||++.+
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH
Confidence            589999999999999999998

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=94.47  E-value=0.041  Score=44.59  Aligned_cols=27  Identities=30%  Similarity=0.224  Sum_probs=19.5

Q ss_pred             cCCCeEEEE-EcCCCCcHHHHHHHHHhh
Q 041747          170 DYRCRIIGL-YGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       170 ~~~~~vi~I-~G~~GiGKTTLa~~i~~~  196 (211)
                      +...++|.| .|.||+||||+|-.+--.
T Consensus        22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~   49 (349)
T 3ug7_A           22 KKDGTKYIMFGGKGGVGKTTMSAATGVY   49 (349)
T ss_dssp             SSCSCEEEEEECSSSTTHHHHHHHHHHH
T ss_pred             ccCCCEEEEEeCCCCccHHHHHHHHHHH
Confidence            344555555 588999999999887544

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=94.45  E-value=0.025  Score=45.87  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+..|+|+|..|+|||||.+.+.+.
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5669999999999999999999874

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.43  E-value=0.038  Score=46.21  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=27.8

Q ss_pred             HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++.-+.  ...++-|.|.+|+|||||+..+....
T Consensus       189 ~LD~~lgGl~--~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          189 ELDQLIGTLG--PGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHHHCCCC--TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhhhhcCCcC--CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4556654343  56799999999999999999987654

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=94.34  E-value=0.021  Score=44.83  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             CCeEEEEEc---CCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYG---IGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G---~~GiGKTTLa~~i~~~~  197 (211)
                      +.++|+|++   -||+||||++-.+-...
T Consensus        33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~l   61 (298)
T 2oze_A           33 KNEAIVILNNYFKGGVGKSKLSTMFAYLT   61 (298)
T ss_dssp             HCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence            467888886   89999999999886543

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=94.34  E-value=0.074  Score=44.84  Aligned_cols=38  Identities=34%  Similarity=0.517  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV  210 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv  210 (211)
                      .+...++|+|..|+|||||++.+-+.. . +.+-++++++
T Consensus       151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~-~~~~~v~V~~  188 (482)
T 2ck3_D          151 AKGGKIGLFGGAGVGKTVLIMELINNV-A-KAHGGYSVFA  188 (482)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHT-T-TTCSSEEEEE
T ss_pred             ccCCeeeeecCCCCChHHHHHHHHHhh-H-hhCCCEEEEE
Confidence            367899999999999999999987753 1 2233455543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=94.33  E-value=0.041  Score=46.16  Aligned_cols=39  Identities=15%  Similarity=0.196  Sum_probs=29.9

Q ss_pred             HHHHHHHHHh--hccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          158 DSMLDEVWGH--IADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       158 ~~~~~~l~~~--L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ++.++.++..  +.+..+.||+|+|...+||+||++.+++.
T Consensus        50 ~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           50 ETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             HHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4455555543  23457899999999999999999999864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=94.32  E-value=0.052  Score=44.30  Aligned_cols=39  Identities=15%  Similarity=0.325  Sum_probs=29.8

Q ss_pred             cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .|.+.-.+.+..++   ....|.++|..|+|||||.+.+.+.
T Consensus       147 ~gi~~L~~~I~~~~---~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          147 IGMAKVMEAINRYR---EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             BTHHHHHHHHHHHH---TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhc---ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            35565566665544   2357899999999999999999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.31  E-value=0.024  Score=53.83  Aligned_cols=27  Identities=26%  Similarity=0.457  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....++|||+.|.|||||++.+.+..
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence            578899999999999999999997754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.31  E-value=0.013  Score=55.58  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....|+|||..|.|||||++.+..-.
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence            578899999999999999999997643

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.26  E-value=0.036  Score=44.20  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...++-|+|.+|+|||||+..+...
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999988754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.26  E-value=0.027  Score=47.27  Aligned_cols=25  Identities=20%  Similarity=0.485  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....|+|+|.+|+|||||.+.+.+.
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4678999999999999999998764

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=94.21  E-value=0.035  Score=45.32  Aligned_cols=23  Identities=22%  Similarity=0.484  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ...+..|+|.+|.|||||..+|+
T Consensus        24 ~~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           24 EKGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            44789999999999999999987

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=94.06  E-value=0.036  Score=48.16  Aligned_cols=28  Identities=25%  Similarity=0.376  Sum_probs=24.6

Q ss_pred             cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          170 DYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       170 ~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +....+|+|+|..|+|||||.+.+.+..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            3567899999999999999999998754

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.03  E-value=0.052  Score=47.03  Aligned_cols=26  Identities=31%  Similarity=0.354  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++-|.|.+|+||||++..+....
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35788899999999999999987754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=94.00  E-value=0.075  Score=42.01  Aligned_cols=26  Identities=31%  Similarity=0.277  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...-.|.|+|..|+|||||++.+.+.
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~  178 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTN  178 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhC
Confidence            35567899999999999999988764

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=93.99  E-value=0.032  Score=45.88  Aligned_cols=26  Identities=27%  Similarity=0.203  Sum_probs=21.4

Q ss_pred             CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLY-GIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~-G~~GiGKTTLa~~i~~~  196 (211)
                      ...++|+|+ |-||+||||++-.+-..
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~  132 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHA  132 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence            457899999 77999999999887543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=93.95  E-value=0.034  Score=44.64  Aligned_cols=24  Identities=38%  Similarity=0.386  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .-.|.|+|..|+|||||++.+.+.
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~  188 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLG  188 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSS
T ss_pred             cceEEEECCCCccHHHHHHHHhCC
Confidence            347899999999999999998654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=93.92  E-value=0.012  Score=53.30  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHH-HHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKK-LNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~-i~~  195 (211)
                      ....+++|+|.+|+|||||++. ++.
T Consensus       521 ~~Geiv~I~G~nGSGKSTLl~~~L~g  546 (842)
T 2vf7_A          521 PLGVMTSVTGVSGSGKSTLVSQALVD  546 (842)
T ss_dssp             ESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred             cCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence            3567999999999999999996 553

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=93.89  E-value=0.038  Score=45.34  Aligned_cols=25  Identities=20%  Similarity=0.053  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -.-+.|+|+.|.|||||++.+....
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHH
Confidence            4467899999999999999998765

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=93.89  E-value=0.041  Score=44.52  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....|+|+|..|+|||||++.+.+.
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~   54 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGR   54 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=93.85  E-value=0.072  Score=47.94  Aligned_cols=46  Identities=26%  Similarity=0.362  Sum_probs=34.0

Q ss_pred             ccccchHHHHHHHHHhhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.|.++.++.|...+.-             ...+=|-++|++|.|||.||+.|.+..
T Consensus       477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~  535 (806)
T 3cf2_A          477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC  535 (806)
T ss_dssp             TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence            3456788877777666431             123456789999999999999998865

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.83  E-value=0.044  Score=41.47  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=20.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ...++-|.|.+|+|||||+-.+.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            56799999999999999997753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=93.81  E-value=0.068  Score=43.61  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .|.+.-.+.+..++   ....|.++|..|+|||||.+.+.+..
T Consensus       145 ~gi~~L~~~l~~~~---~~~~i~~vG~~nvGKStliN~L~~~~  184 (368)
T 3h2y_A          145 QGIAELADAIEYYR---GGKDVYVVGCTNVGKSTFINRMIKEF  184 (368)
T ss_dssp             TTHHHHHHHHHHHH---TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred             cCHHHHHhhhhhhc---ccceEEEecCCCCChhHHHHHHHhhh
Confidence            35555555555544   23578999999999999999999863

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=93.76  E-value=0.039  Score=47.57  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...|.|+|..|+|||||++.+.+..
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            56789999999999999999998753

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=93.75  E-value=0.064  Score=45.42  Aligned_cols=38  Identities=37%  Similarity=0.532  Sum_probs=28.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV  210 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv  210 (211)
                      .+...++|+|.+|+|||+|++.+-+.. . +.+-++++++
T Consensus       163 gkGqr~gIfgg~GvGKT~L~~~l~~~~-a-~~~~~v~V~~  200 (498)
T 1fx0_B          163 RRGGKIGLFGGAGVGKTVLIMELINNI-A-KAHGGVSVFG  200 (498)
T ss_dssp             CTTCCEEEEECSSSSHHHHHHHHHHHT-T-TTCSSCEEEE
T ss_pred             ccCCeEEeecCCCCCchHHHHHHHHHH-H-hhCCCEEEEE
Confidence            367789999999999999999987753 1 2234556554

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=93.74  E-value=0.06  Score=43.15  Aligned_cols=23  Identities=13%  Similarity=0.111  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++-|.|+.|+|||||+-.+....
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999987766543

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=93.74  E-value=0.091  Score=41.52  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             cCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 041747          170 DYRCRIIGLYGI-GGVGKTTLLKKLNNKF  197 (211)
Q Consensus       170 ~~~~~vi~I~G~-~GiGKTTLa~~i~~~~  197 (211)
                      +...++|.|.|. +|+||||++..+-...
T Consensus       101 ~~~~kvI~vts~kgG~GKTtva~nLA~~l  129 (299)
T 3cio_A          101 ETENNILMITGATPDSGKTFVSSTLAAVI  129 (299)
T ss_dssp             SCSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence            356789999986 7899999998876543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=93.62  E-value=0.079  Score=45.37  Aligned_cols=24  Identities=42%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .-.|+++|.+|+|||||.+.+.+.
T Consensus        41 ~~kV~lvG~~~vGKSSLl~~l~~~   64 (535)
T 3dpu_A           41 EIKVHLIGDGMAGKTSLLKQLIGE   64 (535)
T ss_dssp             EEEEEEESSSCSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998764

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=93.57  E-value=0.096  Score=40.78  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=22.4

Q ss_pred             cCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 041747          170 DYRCRIIGLYGI-GGVGKTTLLKKLNNKF  197 (211)
Q Consensus       170 ~~~~~vi~I~G~-~GiGKTTLa~~i~~~~  197 (211)
                      +...++|.|+|. +|+||||++-.+-...
T Consensus        79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~l  107 (271)
T 3bfv_A           79 DSAVQSIVITSEAPGAGKSTIAANLAVAY  107 (271)
T ss_dssp             TCCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            356789999976 7899999998876543

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=93.55  E-value=0.055  Score=40.98  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             HHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHH
Q 041747          162 DEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       162 ~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      .+++..+.  +.+.+.|+|..|+||||+.....
T Consensus        67 ~~~i~~i~--~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           67 SEILEAIS--QNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHHHHHH--HCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHh--cCCEEEEEeCCCCCcHHhHHHHH
Confidence            33444444  45789999999999998766543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=93.47  E-value=0.049  Score=45.91  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .|+|+|..|+|||||.+.+.+..
T Consensus       226 kV~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=93.47  E-value=0.12  Score=43.67  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .|.|+|..|+|||||.+.+.+.
T Consensus       235 kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          235 STVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4999999999999999998765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=93.33  E-value=0.019  Score=52.47  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHH
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKL  193 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i  193 (211)
                      ....+++|+|.+|.|||||++.+
T Consensus       648 ~~Geiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          648 PLGTFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             ESSSEEECCBCTTSSHHHHHTTT
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHH
Confidence            35679999999999999999985

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=93.26  E-value=0.0073  Score=44.41  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ..-.|.|+|..|+|||||++.+.+
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~   55 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFAD   55 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            355789999999999999988764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=93.19  E-value=0.066  Score=43.63  Aligned_cols=22  Identities=45%  Similarity=0.616  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKL  193 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i  193 (211)
                      +...|-|+|.+|+||||+++.+
T Consensus        32 ~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           32 RLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CccEEEEECCCCCcHHHHHHHH
Confidence            5667889999999999999885

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=93.00  E-value=0.14  Score=40.20  Aligned_cols=29  Identities=14%  Similarity=0.252  Sum_probs=23.0

Q ss_pred             ccCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 041747          169 ADYRCRIIGLYGI-GGVGKTTLLKKLNNKF  197 (211)
Q Consensus       169 ~~~~~~vi~I~G~-~GiGKTTLa~~i~~~~  197 (211)
                      .+.+.++|.|+|. +|+||||++-.+-...
T Consensus        88 ~~~~~kvI~vts~kgG~GKTtva~nLA~~l  117 (286)
T 3la6_A           88 MQAQNNVLMMTGVSPSIGMTFVCANLAAVI  117 (286)
T ss_dssp             TTTTCCEEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            3457889999976 7899999999876543

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=92.99  E-value=0.055  Score=44.28  Aligned_cols=26  Identities=27%  Similarity=0.123  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|.|=|+-|+||||+++.+.+..
T Consensus        48 ~~~fIt~EG~dGsGKTT~~~~Lae~L   73 (376)
T 1of1_A           48 TLLRVYIDGPHGMGKTTTTQLLVALG   73 (376)
T ss_dssp             EEEEEEECSSTTSSHHHHHHHHHC--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=92.95  E-value=0.13  Score=43.00  Aligned_cols=42  Identities=26%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             cchHHHHHHHHHhhcc-------CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          155 VGFDSMLDEVWGHIAD-------YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~-------~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .|.++..+.+...+..       +....|+++|.+|+|||||++.+.+.
T Consensus       170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence            3566667777666532       34678999999999999999999854

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=92.88  E-value=0.031  Score=46.05  Aligned_cols=26  Identities=27%  Similarity=0.144  Sum_probs=13.8

Q ss_pred             CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLY-GIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~-G~~GiGKTTLa~~i~~~  196 (211)
                      ...++|+|+ |-||+||||++-.+-..
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~  135 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHA  135 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHH
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHH
Confidence            467899999 78999999988887543

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=92.85  E-value=0.1  Score=43.83  Aligned_cols=38  Identities=16%  Similarity=0.219  Sum_probs=29.0

Q ss_pred             HHHHHHHHHh--hccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          158 DSMLDEVWGH--IADYRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       158 ~~~~~~l~~~--L~~~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ++.++.|+..  +.+..+.||+|+|+.+.||+||++.++.
T Consensus        50 ~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~   89 (457)
T 4ido_A           50 ETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR   89 (457)
T ss_dssp             HHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHH
Confidence            4555555543  3356789999999999999999997753

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=92.83  E-value=0.063  Score=44.90  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ...++..|.|.+|.||||+++.+.+
T Consensus       159 ~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          159 SSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             ccccEEEEEcCCCCCHHHHHHHHhc
Confidence            4678999999999999999988765

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=92.81  E-value=0.19  Score=43.39  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+...++|.|..|+|||+|+..|-+..
T Consensus       230 grGqr~~Ifgg~g~GKT~L~~~ia~~~  256 (600)
T 3vr4_A          230 TKGGAAAVPGPFGAGKTVVQHQIAKWS  256 (600)
T ss_dssp             BTTCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cCCCEEeeecCCCccHHHHHHHHHhcc
Confidence            367899999999999999999997753

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=92.81  E-value=0.11  Score=43.52  Aligned_cols=26  Identities=12%  Similarity=0.256  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...++|.|..|+|||||+..|.+..
T Consensus       150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~  175 (465)
T 3vr4_D          150 RGQKLPVFSGSGLPHKELAAQIARQA  175 (465)
T ss_dssp             TTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEeCCCCcChHHHHHHHHHHH
Confidence            55678999999999999999998865

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=92.78  E-value=0.047  Score=44.14  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +..|+++|..|+|||||++.+.+.
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcC
Confidence            456899999999999999998764

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=92.67  E-value=0.1  Score=44.28  Aligned_cols=35  Identities=9%  Similarity=0.080  Sum_probs=26.3

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++.++.-+.  ...++-|.|.+|+|||||+-.+..+.
T Consensus       232 LD~~lgGl~--~G~l~li~G~pG~GKT~lal~~a~~~  266 (503)
T 1q57_A          232 INDKTLGAR--GGEVIMVTSGSGMVMSTFVRQQALQW  266 (503)
T ss_dssp             HHHHHCCCC--TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             hhHhhcccC--CCeEEEEeecCCCCchHHHHHHHHHH
Confidence            444443232  66789999999999999999887654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=92.38  E-value=0.12  Score=45.75  Aligned_cols=27  Identities=22%  Similarity=0.101  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...-.|+|+|..|+|||||++.+.+..
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356679999999999999999998753

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=92.25  E-value=0.064  Score=44.69  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....|+|+|..|+|||||+..+..+
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~   47 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHD   47 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhh
Confidence            4467899999999999999998654

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=92.15  E-value=0.19  Score=43.14  Aligned_cols=27  Identities=19%  Similarity=0.058  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+...++|.|..|+|||+|+..|-+..
T Consensus       219 grGqr~~Ifg~~g~GKT~l~~~ia~~~  245 (578)
T 3gqb_A          219 AMGGTAAIPGPFGSGKSVTQQSLAKWS  245 (578)
T ss_dssp             ETTCEEEECCCTTSCHHHHHHHHHHHS
T ss_pred             cCCCEEeeeCCCCccHHHHHHHHHhcc
Confidence            367889999999999999999997753

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=92.14  E-value=0.094  Score=45.74  Aligned_cols=26  Identities=38%  Similarity=0.381  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .-+++-|.|.+|+||||++..+....
T Consensus       163 ~~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          163 TRRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            35788999999999999998876654

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=92.01  E-value=0.11  Score=43.55  Aligned_cols=27  Identities=7%  Similarity=0.223  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .....++|.|.+|+|||||+..|.+..
T Consensus       145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~  171 (464)
T 3gqb_B          145 VRGQKLPIFSGSGLPANEIAAQIARQA  171 (464)
T ss_dssp             BTTCBCCEEEETTSCHHHHHHHHHHHC
T ss_pred             ccCCEEEEecCCCCCchHHHHHHHHHH
Confidence            356788999999999999999998765

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=91.98  E-value=0.073  Score=48.59  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=17.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLK  191 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~  191 (211)
                      ...+++|+|.+|+|||||+.
T Consensus       609 ~Geiv~I~G~SGSGKSTLl~  628 (916)
T 3pih_A          609 LGVFVCVTGVSGSGKSSLVM  628 (916)
T ss_dssp             SSSEEEEECSTTSSHHHHHH
T ss_pred             CCcEEEEEccCCCChhhhHH
Confidence            56799999999999999983

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=91.95  E-value=0.1  Score=41.65  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...-+.|.|.+|+||||||..+...
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            3567899999999999999998763

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=91.79  E-value=0.043  Score=46.85  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ...+..|+|.+|.|||||+..|+-
T Consensus        59 ~~g~n~i~G~NGaGKS~lleAl~~   82 (517)
T 4ad8_A           59 GGGFCAFTGETGAGKSIIVDALGL   82 (517)
T ss_dssp             CCSEEEEEESHHHHHHHHTHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHH
Confidence            345999999999999999999953

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=91.77  E-value=0.17  Score=43.51  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+...++|.|..|+|||+|++.+-+..
T Consensus       225 gkGqr~~I~g~~g~GKT~L~~~ia~~~  251 (588)
T 3mfy_A          225 AKGGTAAIPGPAGSGKTVTQHQLAKWS  251 (588)
T ss_dssp             ETTCEEEECSCCSHHHHHHHHHHHHHS
T ss_pred             ccCCeEEeecCCCCCHHHHHHHHHhcc
Confidence            367899999999999999999987643

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=90.84  E-value=0.3  Score=41.43  Aligned_cols=27  Identities=26%  Similarity=0.207  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTL-LKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTL-a~~i~~~~  197 (211)
                      .....++|+|..|+|||+| +..|.|..
T Consensus       160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~  187 (502)
T 2qe7_A          160 GRGQRELIIGDRQTGKTTIAIDTIINQK  187 (502)
T ss_dssp             BTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred             ccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence            4677899999999999999 56887754

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=90.12  E-value=0.19  Score=42.33  Aligned_cols=27  Identities=7%  Similarity=0.260  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .....++|+|.+|+|||||+..|.+..
T Consensus       150 grGQr~~Ifgg~G~GKt~Ll~~Ia~~~  176 (469)
T 2c61_A          150 VRGQKLPIFSASGLPHNEIALQIARQA  176 (469)
T ss_dssp             BTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            356788999999999999999998865

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=90.10  E-value=0.35  Score=47.71  Aligned_cols=36  Identities=33%  Similarity=0.424  Sum_probs=28.2

Q ss_pred             HHHHHHH--hhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWG--HIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~--~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++.  -+.  ..+++-|+|.+|+|||||+-.+....
T Consensus       370 ~LD~lLG~GGl~--~G~lilI~G~pGsGKTtLaLqia~~~  407 (2050)
T 3cmu_A          370 SLDIALGAGGLP--MGRIVEIYGPESSGKTTLTLQVIAAA  407 (2050)
T ss_dssp             HHHHHHSSSSEE--TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhccCCcc--CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4555554  232  67899999999999999999987765

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=90.01  E-value=0.3  Score=41.44  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTL-LKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTL-a~~i~~~~  197 (211)
                      .....++|+|..|+||||| +..|.+..
T Consensus       173 grGQR~~I~g~~g~GKT~Lal~~I~~~~  200 (515)
T 2r9v_A          173 GRGQRELIIGDRQTGKTAIAIDTIINQK  200 (515)
T ss_dssp             ETTCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred             ccCCEEEEEcCCCCCccHHHHHHHHHhh
Confidence            3677899999999999999 56787754

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=89.88  E-value=0.46  Score=35.74  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCcHHH-HHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTT-LLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTT-La~~i~~~~  197 (211)
                      ....+.-|+|+-|.|||| |.+.+++-.
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~   53 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGI   53 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356788899999999999 778876654

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=89.88  E-value=0.35  Score=41.01  Aligned_cols=27  Identities=26%  Similarity=0.144  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHH-HHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLL-KKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa-~~i~~~~  197 (211)
                      .....++|.|..|+|||+|+ ..|.|..
T Consensus       160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~  187 (513)
T 3oaa_A          160 GRGQRELIIGDRQTGKTALAIDAIINQR  187 (513)
T ss_dssp             BTTCBCEEEESSSSSHHHHHHHHHHTTS
T ss_pred             ccCCEEEeecCCCCCcchHHHHHHHhhc
Confidence            36678999999999999995 6777743

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=89.82  E-value=0.19  Score=43.85  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.-|.|++|.||||++..+....
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l  219 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHL  219 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            467799999999999887776543

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=89.57  E-value=0.4  Score=39.23  Aligned_cols=43  Identities=21%  Similarity=0.272  Sum_probs=28.8

Q ss_pred             ccchHHHHHHHHHhhc---cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          154 TVGFDSMLDEVWGHIA---DYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       154 ~~g~~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++|......++...+.   ..+..| -|.|..|+|||++|+.++...
T Consensus       139 ~ig~s~~m~~l~~~i~~~a~~~~~v-li~Ge~GtGK~~lAr~ih~~s  184 (387)
T 1ny5_A          139 YVFESPKMKEILEKIKKISCAECPV-LITGESGVGKEVVARLIHKLS  184 (387)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSCE-EEECSTTSSHHHHHHHHHHHS
T ss_pred             hhhccHHhhHHHHHHHHhcCCCCCe-EEecCCCcCHHHHHHHHHHhc
Confidence            3444344444444433   344444 899999999999999998754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=89.52  E-value=0.2  Score=40.98  Aligned_cols=26  Identities=38%  Similarity=0.580  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+..-|+|+|.+.+|||||.+.+-+.
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~   95 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGT   95 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCC
Confidence            46778999999999999999999764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=89.44  E-value=0.19  Score=43.82  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..-.|+|+|..|+|||||...+...
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHh
Confidence            4557889999999999999998643

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=89.40  E-value=0.41  Score=41.92  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=20.1

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHH-HHHHh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLL-KKLNN  195 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa-~~i~~  195 (211)
                      .+-+...|.  ...+.-|.||+|+|||+.+ ..|+.
T Consensus       195 ~~AV~~al~--~~~~~lI~GPPGTGKT~ti~~~I~~  228 (646)
T 4b3f_X          195 KEAVLFALS--QKELAIIHGPPGTGKTTTVVEIILQ  228 (646)
T ss_dssp             HHHHHHHHH--CSSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHhc--CCCceEEECCCCCCHHHHHHHHHHH
Confidence            333444443  3346668899999998654 44443

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=89.35  E-value=0.24  Score=39.48  Aligned_cols=24  Identities=29%  Similarity=0.214  Sum_probs=19.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ...-+-|.|.+|+||||||-.+..
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            445678899999999999988754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=89.30  E-value=0.19  Score=42.51  Aligned_cols=26  Identities=23%  Similarity=0.219  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...--|.|+|..|+|||||+..+..+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            35567889999999999999998654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=89.21  E-value=0.29  Score=42.56  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....|+|+|..++|||||+..+..
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHH
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Confidence            455799999999999999998854

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=88.87  E-value=0.59  Score=36.98  Aligned_cols=26  Identities=12%  Similarity=0.153  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..-+|.+=|+-|.||+|.++.|+...
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~L  110 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANM  110 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence            44566677999999999999999876

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=88.84  E-value=0.083  Score=44.74  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -.|+|+|.+|+|||||.+.+.+..
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~  267 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNED  267 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHT
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCC
Confidence            468899999999999999998764

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=88.50  E-value=0.25  Score=41.90  Aligned_cols=27  Identities=22%  Similarity=0.127  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTL-LKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTL-a~~i~~~~  197 (211)
                      .+...++|+|..|+|||+| +..|.|..
T Consensus       161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~  188 (507)
T 1fx0_A          161 GRGQRELIIGDRQTGKTAVATDTILNQQ  188 (507)
T ss_dssp             BTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred             ccCCEEEEecCCCCCccHHHHHHHHHhh
Confidence            3567889999999999999 56887754

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=88.41  E-value=0.053  Score=45.15  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....|+|+|..|+|||||++.+.+.
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~   57 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQ   57 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcC
Confidence            35678999999999999999887654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=88.41  E-value=0.18  Score=42.50  Aligned_cols=25  Identities=24%  Similarity=0.073  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      +....|+|+|..++|||||+..+..
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHH
Confidence            4556799999999999999998753

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=88.40  E-value=0.55  Score=46.37  Aligned_cols=36  Identities=33%  Similarity=0.424  Sum_probs=28.3

Q ss_pred             HHHHHH--HhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVW--GHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~--~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.++  .++.  ..+.+-++|+.|+||||||..+-...
T Consensus      1068 ~Ld~~lg~ggi~--~g~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A         1068 SLDIALGAGGLP--MGRIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp             HHHHHHSSSSEE--TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhccCCcC--CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            445565  2554  78899999999999999999987654

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=88.38  E-value=0.49  Score=40.90  Aligned_cols=37  Identities=35%  Similarity=0.504  Sum_probs=23.5

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++.++.-+......++-+.|.||+||||++-.+--..
T Consensus       315 l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l  351 (589)
T 1ihu_A          315 LSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRL  351 (589)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHH
Confidence            3344443333344555567999999999988775443

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=88.27  E-value=0.63  Score=39.67  Aligned_cols=25  Identities=12%  Similarity=0.133  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +...+.|.|+.|+||||+++.+...
T Consensus       166 ~~pHlLIaG~TGSGKSt~L~~li~s  190 (512)
T 2ius_A          166 KMPHLLVAGTTGSGASVGVNAMILS  190 (512)
T ss_dssp             GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999987653

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=88.22  E-value=0.58  Score=38.02  Aligned_cols=44  Identities=23%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             cccchHHHHHHHHHhh---ccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHI---ADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L---~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|......++...+   ...... +-|.|..|+||+++|+.++...
T Consensus       130 ~~ig~s~~~~~~~~~~~~~a~~~~~-vli~GesGtGKe~lAr~ih~~s  176 (368)
T 3dzd_A          130 EFVGEHPKILEIKRLIPKIAKSKAP-VLITGESGTGKEIVARLIHRYS  176 (368)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHTSCSC-EEEECCTTSSHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHhhhhhhhccchh-heEEeCCCchHHHHHHHHHHhc
Confidence            3556544444444443   223333 5589999999999999999865

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=88.10  E-value=0.36  Score=43.32  Aligned_cols=33  Identities=27%  Similarity=0.282  Sum_probs=23.2

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .+.+...+.  +..++.|+|+.|.||||++..+..
T Consensus        99 ~~~i~~~l~--~~~~vii~gpTGSGKTtllp~ll~  131 (773)
T 2xau_A           99 RDEFLKLYQ--NNQIMVFVGETGSGKTTQIPQFVL  131 (773)
T ss_dssp             HHHHHHHHH--HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHh--CCCeEEEECCCCCCHHHHHHHHHH
Confidence            344444444  456899999999999997666543

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=88.09  E-value=0.33  Score=47.12  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++=|+|+.|.|||+||..+..+-
T Consensus      1081 ~g~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A         1081 MGRIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCChHHHHHHHHHHh
Confidence            45779999999999999999988754

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=87.95  E-value=0.31  Score=43.95  Aligned_cols=25  Identities=20%  Similarity=0.189  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+.-|.|++|+||||++..+....
T Consensus       371 ~~~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          371 RPLSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            3577799999999999887776543

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=87.00  E-value=0.48  Score=40.22  Aligned_cols=27  Identities=22%  Similarity=0.194  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTL-LKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTL-a~~i~~~~  197 (211)
                      .....++|+|..|+|||+| +..|.|..
T Consensus       160 grGQR~~I~g~~g~GKT~Lal~~I~~q~  187 (510)
T 2ck3_A          160 GRGQRELIIGDRQTGKTSIAIDTIINQK  187 (510)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred             ccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence            3677899999999999999 66777765

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=86.88  E-value=0.44  Score=39.41  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...-+.|+|+.|+|||++++.+....
T Consensus        52 ~~~h~~i~G~tGsGKs~~~~~li~~~   77 (437)
T 1e9r_A           52 EPRHLLVNGATGTGKSVLLRELAYTG   77 (437)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHH
Confidence            45678899999999999998776654

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1

Probab=86.69  E-value=0.41  Score=40.81  Aligned_cols=20  Identities=35%  Similarity=0.637  Sum_probs=17.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLK  191 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~  191 (211)
                      +..++.+.|.+|.|||||+.
T Consensus       212 ~g~~~~ffGlSGtGKTTLs~  231 (524)
T 1ii2_A          212 QGDVTVFFGLSGTGKTTLSA  231 (524)
T ss_dssp             TCCEEEEECCTTSSHHHHHC
T ss_pred             CCCEEEEEccCCcchhhhhh
Confidence            45789999999999999985

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*

Probab=86.29  E-value=0.44  Score=40.66  Aligned_cols=21  Identities=33%  Similarity=0.639  Sum_probs=18.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKK  192 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~  192 (211)
                      +..++.+.|.+|.|||||+..
T Consensus       240 ~g~~~lffGlSGtGKTTLs~d  260 (540)
T 2olr_A          240 KGDVAVFFGLSGTGKTTLSTD  260 (540)
T ss_dssp             TSCEEEEECSTTSSHHHHHCC
T ss_pred             CCCEEEEEccCCCCHHHHhcC
Confidence            457899999999999999853

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*

Probab=86.12  E-value=0.37  Score=41.09  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=18.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKK  192 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~  192 (211)
                      +-.++.+.|.+|.|||||+..
T Consensus       224 ~g~~~~ffGlSGtGKTtLs~~  244 (529)
T 1j3b_A          224 EGDVAVFFGLSGTGKTTLSTD  244 (529)
T ss_dssp             TCCEEEEEECTTSCHHHHTCB
T ss_pred             CCcEEEEEccccCChhhHhhc
Confidence            446888899999999999965

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=85.83  E-value=0.51  Score=40.59  Aligned_cols=23  Identities=39%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ++|=|+|+|-.+.|||||+-.+.
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL   52 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLL   52 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCHHHHHHHHH
Confidence            78899999999999999999874

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=85.47  E-value=0.49  Score=42.63  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=18.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ..+.-|.|++|.||||++..+..
T Consensus       375 ~~~~lI~GppGTGKT~~i~~~i~  397 (802)
T 2xzl_A          375 RPLSLIQGPPGTGKTVTSATIVY  397 (802)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHH
Confidence            34677999999999988776644

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A

Probab=85.29  E-value=0.46  Score=40.59  Aligned_cols=19  Identities=37%  Similarity=0.618  Sum_probs=17.0

Q ss_pred             eEEEEEcCCCCcHHHHHHH
Q 041747          174 RIIGLYGIGGVGKTTLLKK  192 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~  192 (211)
                      .++.+.|.+|.|||||+..
T Consensus       236 ~~~~ffGlSGtGKTTLs~d  254 (532)
T 1ytm_A          236 NTAIFFGLSGTGKTTLSTD  254 (532)
T ss_dssp             SEEEEECCTTSSHHHHHCC
T ss_pred             eEEEEEecCCCCHHHHhhC
Confidence            6899999999999999853

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=84.50  E-value=0.63  Score=45.26  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|=|+|+.|+||||||-++....
T Consensus      1430 rg~~iei~g~~~sGkttl~~~~~a~~ 1455 (1706)
T 3cmw_A         1430 MGRIVEIYGPESSGKTTLTLQVIAAA 1455 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999988654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=84.14  E-value=0.51  Score=42.71  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHH-HHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKK-LNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~-i~~  195 (211)
                      +.-+.+.|.|.+|+||+|||-- ||.
T Consensus        34 P~~~l~viTGvSGSGKSSLafdtl~a   59 (842)
T 2vf7_A           34 PRDALVVFTGVSGSGKSSLAFGTLYA   59 (842)
T ss_dssp             ESSSEEEEESSTTSSHHHHHTTTHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999954 443

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=83.87  E-value=1.3  Score=33.19  Aligned_cols=27  Identities=19%  Similarity=0.000  Sum_probs=20.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+.-++|.-|.||||.+-.+..+.
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            356788899999999998776654443

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=82.53  E-value=0.57  Score=35.79  Aligned_cols=17  Identities=29%  Similarity=0.534  Sum_probs=15.3

Q ss_pred             EcCCCCcHHHHHHHHHh
Q 041747          179 YGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       179 ~G~~GiGKTTLa~~i~~  195 (211)
                      .|..|+|||||++.+.+
T Consensus        34 ~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           34 KGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             TTTCCCSHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHh
Confidence            48889999999999986

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=82.38  E-value=1.8  Score=37.41  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..-+.|.|..|.|||++++.+.-..
T Consensus       214 ~pHlLIaG~TGSGKS~~L~tlI~sL  238 (574)
T 2iut_A          214 MPHLLVAGTTGSGKSVGVNAMLLSI  238 (574)
T ss_dssp             SCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999876544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=81.44  E-value=1.7  Score=38.95  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+..|+|+|..++|||||.+.+.+.
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~   74 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGR   74 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            6789999999999999999999875

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=80.74  E-value=0.82  Score=41.95  Aligned_cols=25  Identities=28%  Similarity=0.485  Sum_probs=20.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHH-HHh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKK-LNN  195 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~-i~~  195 (211)
                      +.-+.+.|.|.+|+||++||-- ||.
T Consensus        42 P~~~lvv~tG~SGSGKSSLafdtlya   67 (972)
T 2r6f_A           42 PRGKLVVLTGLSGSGKSSLAFDTIYA   67 (972)
T ss_dssp             ETTSEEEEEESTTSSHHHHHTTTHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999964 443

>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*

Probab=80.63  E-value=0.79  Score=39.84  Aligned_cols=19  Identities=26%  Similarity=0.284  Sum_probs=14.9

Q ss_pred             eEEEEEcCCCCcHHHHHHH
Q 041747          174 RIIGLYGIGGVGKTTLLKK  192 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~  192 (211)
                      ..+-|.|.+|+||||.+-.
T Consensus        23 ~~~lV~a~aGsGKT~~l~~   41 (647)
T 3lfu_A           23 SNLLVLAGAGSGKTRVLVH   41 (647)
T ss_dssp             SCEEEEECTTSCHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHH
Confidence            3467899999999987544

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=80.09  E-value=0.96  Score=33.41  Aligned_cols=24  Identities=29%  Similarity=0.220  Sum_probs=17.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...|-|++..|.||||+|--+--.
T Consensus        28 ~g~i~v~tG~GkGKTTaA~GlalR   51 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAAR   51 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345666777779999999776443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	8e-07

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.0 bits (108), Expect = 8e-07
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 155 VGFDSMLDEVWGH---IADYRCRIIGLYGIGGVGKTTLLKK-LNNKFLDINHHFDLVIWV 210
              +  +D V      + D     + L+G  G GK+ +  + L+     I  ++D ++W+
Sbjct: 23  YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.57
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.29
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.26
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.17
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.12
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.09
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.06
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.05
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.05
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.95
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.94
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.94
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.89
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.87
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.81
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.69
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.65
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.52
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.52
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.38
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.35
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.35
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.34
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.34
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.33
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.32
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.32
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.28
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.26
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.26
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.26
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.25
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.24
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.23
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.23
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.22
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.21
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.19
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.16
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.16
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.1
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.08
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.06
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.06
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.04
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.03
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.9
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.86
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.85
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.76
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.73
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.66
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.58
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.53
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.35
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.34
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.3
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.25
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.21
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.91
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.8
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.65
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.55
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.46
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.24
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.12
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.06
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.05
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.98
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.93
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.91
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.86
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.74
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.64
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.52
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.52
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.44
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.18
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.16
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.12
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.87
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.74
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.72
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.41
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.23
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.22
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.1
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.07
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.93
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.22
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.93
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.17
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.8
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.5
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.97
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.22
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.01
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.88
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	85.28
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	85.01
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	84.29
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	83.49
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	82.95
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	82.27
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	81.44
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.32

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.57  E-value=1.2e-15  Score=119.46  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=51.7

Q ss_pred             ccccchHHHHHHHHHhhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhhh-hcCCCccEEEEeC
Q 041747          152 EETVGFDSMLDEVWGHIAD---YRCRIIGLYGIGGVGKTTLLKKLNNKFL-DINHHFDLVIWVA  211 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTTLa~~i~~~~~-~v~~~F~~~~wv~  211 (211)
                      +.++||+.++++|+.+|.+   +...+|+|+||||+||||||+.+|++.. .+..+|++++||+
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~   83 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK   83 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE
T ss_pred             CceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEE
Confidence            4478999999999999963   5688999999999999999999999751 2677899999984

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.29  E-value=9.5e-07  Score=66.82  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=39.5

Q ss_pred             ccccchHHHHHHHHHhhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++||++..+.|..+|..      .....+-|+|++|+||||+|+.+.+..
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999998863      345788999999999999999999876

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.26  E-value=8e-07  Score=67.35  Aligned_cols=43  Identities=19%  Similarity=0.306  Sum_probs=36.7

Q ss_pred             cccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.++||+.+++.|...    ..+++.|+|++|+|||||++.+.++.
T Consensus        11 ~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          11 RKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             GGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            36789999999998764    45789999999999999999987755

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.17  E-value=1.3e-06  Score=65.01  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=40.6

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|..|+.++...-+=++|+.|+||||||+.+.+..
T Consensus        24 ~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          24 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            5689999999999999988777778899999999999999987653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=1.6e-06  Score=64.34  Aligned_cols=47  Identities=23%  Similarity=0.343  Sum_probs=40.0

Q ss_pred             cccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++|.+..++.|..|+.+....-+=++|+.|+||||+|+.+.+..
T Consensus        14 ~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          14 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence            35689999999999999988776667799999999999999886653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=2.2e-06  Score=63.49  Aligned_cols=47  Identities=21%  Similarity=0.395  Sum_probs=40.1

Q ss_pred             cccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++|.+..++.|..|+.++....+=++|+.|+||||||+.+.+..
T Consensus        13 ~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          13 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHh
Confidence            35689999999999999987766556699999999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=1.7e-06  Score=64.46  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=39.0

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+++|.+..++.|..|+.......+-++|+.|+|||||++.+.++
T Consensus        12 ~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          12 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHH
Confidence            557899888999999998777666789999999999999998765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=3.2e-06  Score=63.13  Aligned_cols=46  Identities=22%  Similarity=0.355  Sum_probs=37.5

Q ss_pred             ccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++++|.+..++.|..++..     ....-+=++|++|+||||||+.+.+..
T Consensus         9 ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2           9 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999888888888752     235556689999999999999998876

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=2.9e-06  Score=63.29  Aligned_cols=47  Identities=21%  Similarity=0.285  Sum_probs=38.4

Q ss_pred             cccccchHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -++++|.+..++.|..|+..     ....-+=++|++|+||||||+.+.++.
T Consensus         8 ~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2           8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhcc
Confidence            35689999999999988753     234456699999999999999998875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=6.5e-06  Score=61.77  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=39.1

Q ss_pred             cccccchHHHHHHHHHhhcc-----------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIAD-----------------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++|.+..+++|..||.+                 ...+.+-++|++|+||||+|+.+.+..
T Consensus        13 ~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          13 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            36689999999999998853                 134678899999999999999998865

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=6.6e-06  Score=59.54  Aligned_cols=45  Identities=22%  Similarity=0.291  Sum_probs=37.9

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ++++||+.++++++..|....-.-+-+||.+|+|||+++..+...
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHH
Confidence            347899999999999998655566779999999999998887654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.94  E-value=1.9e-06  Score=65.41  Aligned_cols=46  Identities=24%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             ccccchHHHHHHHHHhhcc--------CC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIAD--------YR-CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~--------~~-~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +.+.||+...+.|..+|..        .+ ..++.++|++|+||||+++.+.+..
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence            5578999999999887742        11 2245668999999999999998864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=8.3e-06  Score=62.09  Aligned_cols=45  Identities=24%  Similarity=0.289  Sum_probs=37.6

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ++++||+.++++++..|....-.-+-+||++|+|||+|+..+...
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHH
Confidence            347899999999999997655555669999999999999887654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=7.3e-06  Score=61.38  Aligned_cols=47  Identities=17%  Similarity=0.132  Sum_probs=37.8

Q ss_pred             cccccchHHHHHHHHHhhccC-CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          151 MEETVGFDSMLDEVWGHIADY-RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       151 ~~~~~g~~~~~~~l~~~L~~~-~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++++|.++..+.|..++... ...-+-++|++|+||||+|+.+.++.
T Consensus        10 ~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          10 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            356899999999998888653 34446699999999999999998753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.81  E-value=1.3e-05  Score=57.39  Aligned_cols=28  Identities=29%  Similarity=0.452  Sum_probs=24.0

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          169 ADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       169 ~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...++-+|||.|..|+||||||+.+...
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456779999999999999999998653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.69  E-value=2.1e-05  Score=62.99  Aligned_cols=57  Identities=21%  Similarity=0.104  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHH----HhhhhhcCCCccEEEE
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKL----NNKFLDINHHFDLVIW  209 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i----~~~~~~v~~~F~~~~w  209 (211)
                      ++++||+.++++++..|.-..-.-+-+||.+|+|||+|+..+    .+.. -.....+.++|
T Consensus        22 d~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~-vp~~l~~~~i~   82 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGD-VPEGLKGKRIV   82 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTC-SCTTSTTCEEE
T ss_pred             CCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCC-CCHHHcCceEE
Confidence            347899999999999997544444567899999999977544    4432 11223555666

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.65  E-value=2.6e-05  Score=58.79  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHhhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          157 FDSMLDEVWGHIAD-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       157 ~~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.+++.+..|..     +.++.|-++|++|+||||||+.|.+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34445555544432     456778899999999999999999875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=6.2e-05  Score=56.05  Aligned_cols=46  Identities=24%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             ccccchHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.+..++.|..++...++ ..+=++|+.|+||||+|+.+.+..
T Consensus        12 ~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence            5689999999999999987654 457799999999999999976543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.52  E-value=1.8e-05  Score=57.62  Aligned_cols=27  Identities=33%  Similarity=0.605  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +...+++|+|++|+|||||.+.+.+-.
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            477899999999999999999998743

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=5.5e-05  Score=56.16  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            467899999999999999999997643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=0.00011  Score=56.94  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=33.8

Q ss_pred             cccchHHHHHHHHHhhc---------c-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIA---------D-----YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~---------~-----~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|.++.++.|...+.         +     ..++-+-.+||+|+|||.||+.+.+..
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcc
Confidence            35788887777755431         1     245677799999999999999998865

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.35  E-value=5.3e-05  Score=56.54  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+++|+|++|.|||||++.++.-.
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            477899999999999999999998743

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.34  E-value=6.5e-05  Score=55.98  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|..-.
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            577899999999999999999998743

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.34  E-value=5.7e-05  Score=55.99  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|+|||||++.+..-
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCC
Confidence            57889999999999999999998764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=5.7e-05  Score=56.36  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..+++|+|++|+|||||++.++.-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            477899999999999999999998743

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=6.2e-05  Score=56.19  Aligned_cols=27  Identities=37%  Similarity=0.535  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....++||+|++|.|||||.+.+.+-.
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=6.7e-05  Score=57.39  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|..-.
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            578999999999999999999998754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=7.1e-05  Score=56.29  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+.+-.
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            578999999999999999999997643

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.26  E-value=7.7e-05  Score=56.32  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|.|||||++.|..-
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            57889999999999999999999763

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.26  E-value=8.1e-05  Score=55.67  Aligned_cols=26  Identities=31%  Similarity=0.385  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|.|||||++.+..-
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57889999999999999999999764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00017  Score=54.29  Aligned_cols=46  Identities=24%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             ccccchHHHHHHHHHh---hcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGH---IAD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~---L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.++.+++|.+.   +..         ...+-+-++|++|+|||+||+.+.+..
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            5678888777777543   322         234667799999999999999998765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.25  E-value=8.2e-05  Score=55.40  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|+|++|.|||||++.|.+-.
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            588999999999999999998743

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.24  E-value=8.3e-05  Score=55.98  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.+..-.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            577899999999999999999997643

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00016  Score=54.46  Aligned_cols=46  Identities=26%  Similarity=0.336  Sum_probs=35.5

Q ss_pred             ccccchHHHHHHHHHhh----cc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHI----AD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L----~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++.|.++.++.|.+.+    ..         ...+-|=++|++|+|||+||+.+.+..
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHh
Confidence            45788888887777763    22         235667899999999999999998865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.23  E-value=8.2e-05  Score=55.56  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||.+.|..-.
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            478899999999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.22  E-value=7.6e-05  Score=55.25  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            477899999999999999999998743

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=8.2e-05  Score=55.59  Aligned_cols=27  Identities=33%  Similarity=0.576  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .....++|+|..|.|||||++.+.+-.
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            478899999999999999999997743

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.19  E-value=0.00021  Score=53.45  Aligned_cols=45  Identities=18%  Similarity=0.133  Sum_probs=30.6

Q ss_pred             cccchHHHHHHHHHhhc-------c---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          153 ETVGFDSMLDEVWGHIA-------D---YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~-------~---~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++|..++++.++.-+.       .   ...+-|=++|++|+|||+||+.|.+..
T Consensus        10 ~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          10 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcc
Confidence            35665555554444432       1   234556789999999999999998865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=0.0003  Score=52.66  Aligned_cols=46  Identities=22%  Similarity=0.273  Sum_probs=33.3

Q ss_pred             ccccchHHHHHHHHHh---hcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGH---IAD---------YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~---L~~---------~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+++|.++.++.|.+.   +..         ...+-|=++|+.|+|||+||+.+.+..
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHc
Confidence            4578887766655443   322         234568899999999999999998765

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.16  E-value=0.00011  Score=55.36  Aligned_cols=27  Identities=22%  Similarity=0.388  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....+++|+|++|.|||||++.|..-.
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            477899999999999999999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00011  Score=54.55  Aligned_cols=26  Identities=35%  Similarity=0.526  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|.|||||.+.+..-
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            47889999999999999999999873

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.08  E-value=9.8e-05  Score=55.06  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ....+++|+|++|+|||||++.+..-
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            46789999999999999999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00047  Score=53.68  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             HHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++..+..  .+..+|||.|++|+|||||...+-...
T Consensus        40 ~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          40 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3455555543  468899999999999999999986554

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.06  E-value=0.00048  Score=53.56  Aligned_cols=38  Identities=24%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...+++..+..  .+..+|||.|++|+|||||...+-...
T Consensus        36 ~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34455555532  468899999999999999999987654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00019  Score=55.50  Aligned_cols=27  Identities=30%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+-+|||.|..|+||||+|+.+....
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHH
Confidence            457899999999999999999997754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.03  E-value=0.00025  Score=51.69  Aligned_cols=28  Identities=32%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          169 ADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       169 ~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...+..+|-+.|++|+||||||+.+...
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4468889999999999999999998754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.90  E-value=0.00015  Score=54.64  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +...+++|+|..|+|||||++.+..-
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhc
Confidence            57789999999999999999998764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.86  E-value=0.00033  Score=50.01  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      +++..|+|+|..|+|||||.+.+.+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            46678999999999999999999864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00062  Score=52.68  Aligned_cols=46  Identities=22%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             ccccchHHHHHHHHHhhc-------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          152 EETVGFDSMLDEVWGHIA-------D--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~-------~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..++|.+..++.+...+.       +  ....++-.+|+.|+|||.||+.+-.-.
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhc
Confidence            346788888888876653       1  234578899999999999999987643

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00021  Score=54.04  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+-|=++|+.|+|||+||+.+.+..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            4567799999999999999998865

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.73  E-value=0.00035  Score=54.40  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=32.7

Q ss_pred             ccccchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          152 EETVGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       152 ~~~~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ++++|.+..+.-|+-.+-..+..-+=++|..|+||||||+.+-.
T Consensus         7 ~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_           7 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHH
Confidence            67899987776554333333445678999999999999998853

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.66  E-value=0.00091  Score=48.73  Aligned_cols=24  Identities=42%  Similarity=0.531  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+-|+|+.|+|||-|++.++++.
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHh
Confidence            447899999999999999999976

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00071  Score=51.56  Aligned_cols=26  Identities=23%  Similarity=0.128  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+-+|||-|..|+|||||+..|...
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHH
Confidence            45679999999999999999988654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0014  Score=47.36  Aligned_cols=41  Identities=12%  Similarity=0.183  Sum_probs=32.2

Q ss_pred             chHHHHHHHHHhhccCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 041747          156 GFDSMLDEVWGHIADYRC-RIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       156 g~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+...+++...+..+++ ..+-++|+.|+||||+|+.+.+.
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHh
Confidence            345667888888876664 45899999999999999987653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.35  E-value=0.0015  Score=47.96  Aligned_cols=36  Identities=25%  Similarity=0.272  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV  210 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv  210 (211)
                      ...++-|+|.+|+|||||+..+..+.   .++...++|+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~---~~~~~~~~~i   60 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENA---CANKERAILF   60 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH---HTTTCCEEEE
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH---HHhcccccee
Confidence            67899999999999999999988765   3344445554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.0018  Score=49.96  Aligned_cols=44  Identities=34%  Similarity=0.368  Sum_probs=32.1

Q ss_pred             cccchHHHHHHHHHhhc-------c--CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          153 ETVGFDSMLDEVWGHIA-------D--YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       153 ~~~g~~~~~~~l~~~L~-------~--~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .++|.+..++.+...+.       +  ....++-.+|+.|+|||.||+.+-..
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHH
Confidence            35787777777765543       1  23448889999999999999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.34  E-value=0.0016  Score=47.71  Aligned_cols=34  Identities=29%  Similarity=0.558  Sum_probs=26.6

Q ss_pred             HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ++.|..+|.   -+...++|.+|+|||||.+.+..+.
T Consensus        86 ~~~L~~~l~---~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          86 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HhhHHHHhc---CCeEEEECCCCCCHHHHHHhhcchh
Confidence            556666663   4577889999999999999997653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.25  E-value=0.0027  Score=49.97  Aligned_cols=27  Identities=30%  Similarity=0.112  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+.+.+-++|++|+|||++|+.+.+..
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998865

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.21  E-value=0.005  Score=42.42  Aligned_cols=30  Identities=27%  Similarity=0.285  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcC
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDIN  201 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~  201 (211)
                      ....+|.+.|.=|+|||||++.+.... .+.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l-g~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT-TCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhc-ccc
Confidence            456799999999999999999998875 543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.91  E-value=0.004  Score=46.46  Aligned_cols=40  Identities=25%  Similarity=0.403  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          158 DSMLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       158 ~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+.++.+.+.+  ...--|.++|..|+|||||.+.|+++.
T Consensus        15 ~~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          15 QTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCC
Confidence            4455566666654  244567899999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.65  E-value=0.0058  Score=47.98  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...-|=.+|+.|+|||-||+.+-..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhh
Confidence            3556788899999999999998653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0044  Score=43.95  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             HHHHHHH-hhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          160 MLDEVWG-HIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       160 ~~~~l~~-~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .++.++. -+.  ..+++-|.|.+|+|||||+..+..+
T Consensus        11 ~LD~ll~GGi~--~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          11 ELDKLLQGGIE--TGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             HHHHHTTTSEE--TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcCCCc--CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            3455554 444  7789999999999999999887654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0012  Score=46.60  Aligned_cols=19  Identities=32%  Similarity=0.420  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 041747          176 IGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       176 i~I~G~~GiGKTTLa~~i~  194 (211)
                      ..|+|++|+||||+..+|+
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3456999999999999986

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.24  E-value=0.0075  Score=46.43  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          174 RIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .++-++|++|+|||.||+.+....
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHh
Confidence            345558999999999999998864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0074  Score=45.54  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=26.6

Q ss_pred             HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          164 VWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       164 l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ++..+ +..+.||+|+|+-+.||+||++.+++.
T Consensus        24 ~l~~~-~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          24 ILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             HHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             HHHcC-CCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            44444 356899999999999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.06  E-value=0.0016  Score=47.86  Aligned_cols=32  Identities=25%  Similarity=0.483  Sum_probs=22.6

Q ss_pred             HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          163 EVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       163 ~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .|..+|.   -+...++|.+|+|||||.+.+..+.
T Consensus        90 ~L~~~l~---~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          90 DIIPHFQ---DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTGGGGT---TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             HHHHhhc---cceEEEECCCCccHHHHHHhhccHh
Confidence            3444453   3445688999999999999998753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.98  E-value=0.009  Score=46.07  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+-|-|.|..|+|||||++.+.+..
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEeeccccchHHHHHHhhhc
Confidence            3347889999999999999998753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.93  E-value=0.0089  Score=43.63  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+++-|+|.+|+|||||+-.+..+
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            6789999999999999999887654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.91  E-value=0.0066  Score=43.76  Aligned_cols=26  Identities=31%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHH-HHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKK-LNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~-i~~~~  197 (211)
                      ...++-|.|.+|+|||+|+.. +++..
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~~~~   51 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLYNGI   51 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999965 45433

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.028  Score=42.38  Aligned_cols=35  Identities=20%  Similarity=0.127  Sum_probs=28.7

Q ss_pred             HHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          163 EVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       163 ~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +++..|.. .....++|+|..|+|||||+..+.+..
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            46666654 467899999999999999999988754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.0096  Score=43.09  Aligned_cols=25  Identities=28%  Similarity=0.309  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+++-|.|.+|+|||||+-.+...
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            6789999999999999999876543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.014  Score=42.51  Aligned_cols=26  Identities=27%  Similarity=0.192  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...+++-|+|.+|+|||+|+..+..+
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999999887643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.015  Score=45.44  Aligned_cols=24  Identities=42%  Similarity=0.387  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      -++.-|.|++|+||||++..+...
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~  186 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAA  186 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHH
Confidence            468888999999999998765443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.52  E-value=0.013  Score=42.35  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ...++-|.|.+|+|||||+..+..+.
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999986543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.44  E-value=0.031  Score=41.46  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ...++-|.|.+|+|||||+..+--+
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            5678889999999999998887644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.18  E-value=0.024  Score=44.94  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .+--|+|+|..|+|||||.+.+.+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            445689999999999999999986

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.16  E-value=0.016  Score=46.64  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      =|=++|+.|+|||.||+.+-...
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999997643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.12  E-value=0.03  Score=41.22  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhhh
Q 041747          175 IIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       175 vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      -|-|.|..|+|||++|+.|+...
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCcCHHHHHHHHHHhc
Confidence            46888999999999999998653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.87  E-value=0.013  Score=44.27  Aligned_cols=20  Identities=25%  Similarity=0.662  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 041747          174 RIIGLYGIGGVGKTTLLKKL  193 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i  193 (211)
                      .+-.|+|++|+||||+..+|
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            46789999999999999887

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.74  E-value=0.047  Score=40.85  Aligned_cols=26  Identities=46%  Similarity=0.701  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....++|+|..|+|||||+..+-++.
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            56679999999999999988887653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.019  Score=42.55  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+.-|+|.+|+|||||+-.+.-.
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            467789999999999999877654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.41  E-value=0.036  Score=41.39  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhhhhhcCCCccEEEEe
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNKFLDINHHFDLVIWV  210 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~~~~v~~~F~~~~wv  210 (211)
                      ...+++-|+|..|+|||||+-.+.... ...+  ..++||
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~-q~~g--~~~vyI   94 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANA-QAAG--GVAAFI   94 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHH-HHTT--CEEEEE
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHH-hcCC--CEEEEE
Confidence            367899999999999999997776654 2222  346775

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.23  E-value=0.051  Score=42.92  Aligned_cols=43  Identities=21%  Similarity=0.241  Sum_probs=30.9

Q ss_pred             cchHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          155 VGFDSMLDEVWGHIADYRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       155 ~g~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .|....--..+..+......+|-|.|+.|.||||.+..+.+..
T Consensus       140 LG~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         140 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhhhh
Confidence            3554433333444455677899999999999999999988754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.22  E-value=0.028  Score=44.01  Aligned_cols=22  Identities=18%  Similarity=0.524  Sum_probs=18.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHH
Q 041747          173 CRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       173 ~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ..+-.|+|.+|+||||+..+|.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3467789999999999999984

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.10  E-value=0.026  Score=42.22  Aligned_cols=26  Identities=38%  Similarity=0.498  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..-.|+|+|++.+||+||++.+.+..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            45569999999999999999998754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.033  Score=41.45  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++-|+|..|+|||||+-.+....
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHH
Confidence            56799999999999999998887765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.93  E-value=0.051  Score=38.66  Aligned_cols=37  Identities=11%  Similarity=0.100  Sum_probs=27.6

Q ss_pred             HHHHHHhhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          161 LDEVWGHIAD-YRCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       161 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      +..+..+|.. .+..-|-++|+++.|||+++..|.+-.
T Consensus        40 l~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          40 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            3444445543 567899999999999999999886643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.22  E-value=0.05  Score=40.57  Aligned_cols=26  Identities=38%  Similarity=0.456  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ..+++-|+|..|+|||||+-.+....
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHH
Confidence            56799999999999999998887765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.93  E-value=0.056  Score=40.47  Aligned_cols=24  Identities=21%  Similarity=0.066  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      ....++|+|..|+|||+|+..+-.
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             CCceEeeccCCCCChHHHHHHHHh
Confidence            556799999999999999987543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.17  E-value=0.048  Score=41.12  Aligned_cols=15  Identities=33%  Similarity=0.468  Sum_probs=12.3

Q ss_pred             EEEEcCCCCcHHHHH
Q 041747          176 IGLYGIGGVGKTTLL  190 (211)
Q Consensus       176 i~I~G~~GiGKTTLa  190 (211)
                      +-|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            557899999999754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.80  E-value=0.16  Score=37.66  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=26.0

Q ss_pred             HHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHh
Q 041747          162 DEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNN  195 (211)
Q Consensus       162 ~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~  195 (211)
                      .-+..+|..  ++...+-++|+|+.||||++..|..
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            344445532  5677889999999999999999865

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.50  E-value=0.11  Score=40.91  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+-+.|+|..|+|||++++.+...
T Consensus        49 ~~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          49 EPRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCcHHHHHHHHHHH
Confidence            3456899999999999998766544

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.97  E-value=0.16  Score=36.89  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHH
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      ++-+++-|.|++..||||+++.|-
T Consensus        39 ~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          39 PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEeccCchhhHHHHHHHH
Confidence            345788999999999999999974

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.22  E-value=0.25  Score=36.97  Aligned_cols=26  Identities=19%  Similarity=0.019  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          171 YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       171 ~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .....++|+|.+|+|||+|+..+-..
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHh
Confidence            36778999999999999998766543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.01  E-value=0.15  Score=33.13  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=18.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHH
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      +-++.-|+++.|.|||+++-.++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            45677789999999999886644

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.88  E-value=0.37  Score=29.64  Aligned_cols=25  Identities=36%  Similarity=0.592  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      ..+-|=++|.||+|.+.||+.+.+.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~   31 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNE   31 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHH
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhC
Confidence            5667889999999999999998764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.28  E-value=0.3  Score=35.12  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 041747          174 RIIGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       174 ~vi~I~G~~GiGKTTLa~~i~  194 (211)
                      +++-|.|++..||||+++.|-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            477899999999999999874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.01  E-value=0.2  Score=36.49  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=18.9

Q ss_pred             CeE-EEEEcCCCCcHHHHHHHHH
Q 041747          173 CRI-IGLYGIGGVGKTTLLKKLN  194 (211)
Q Consensus       173 ~~v-i~I~G~~GiGKTTLa~~i~  194 (211)
                      ..+ |+|+|-.+.|||||+..+.
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHH
T ss_pred             CceEEEEEeeCCCCHHHHHHHHH
Confidence            344 8999999999999999883

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.49  E-value=0.67  Score=34.24  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      ....|.|+|--+.|||||++.+.+..
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCC
Confidence            34568899999999999999998754

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=82.95  E-value=0.78  Score=34.03  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             HHHHHHHhhcc--CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 041747          160 MLDEVWGHIAD--YRCRIIGLYGIGGVGKTTLLKKLNNK  196 (211)
Q Consensus       160 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTTLa~~i~~~  196 (211)
                      .+.+++..|.+  .+.++|+|.|.+  ||||-+..+..=
T Consensus        24 r~~~~l~~lg~P~~~lkvI~VTGTN--GKtST~~~i~~I   60 (296)
T d2gc6a2          24 RILTLLHALGNPQQQGRYIHVTGTN--GKGSAANAIAHV   60 (296)
T ss_dssp             HHHHHHHHTTCGGGSSCEEEEECSS--SHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchhhCCEEEEeccC--cHHHHHHHHHHH
Confidence            35566666654  578999999887  699988887653

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.44  E-value=0.76  Score=34.10  Aligned_cols=26  Identities=19%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 041747          172 RCRIIGLYGIGGVGKTTLLKKLNNKF  197 (211)
Q Consensus       172 ~~~vi~I~G~~GiGKTTLa~~i~~~~  197 (211)
                      .+..|.|+|--+.||+||++.+.+..
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCCC
Confidence            34578999999999999999998754

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.32  E-value=0.45  Score=33.08  Aligned_cols=17  Identities=29%  Similarity=0.143  Sum_probs=13.9

Q ss_pred             EEEEcCCCCcHHHHHHH
Q 041747          176 IGLYGIGGVGKTTLLKK  192 (211)
Q Consensus       176 i~I~G~~GiGKTTLa~~  192 (211)
                      +-+.++.|.|||+.+..
T Consensus        43 ~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             EEEECSSHHHHHHHHHH
T ss_pred             EEEEcCCCCchhHHHHH
Confidence            44899999999987644