Citrus Sinensis ID: 041785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MNSVSIETKEAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY
Secondary Structure (PSIPRED)
cccccccHHcccccccccHHHcccccHHHHHHHHcccHHHHHHHHHccHHcccccccccccccHHccccHHHHccHHHHHHHHHHccHHHccccccccHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccHHHccccccHHHHHHHHcccHHHHHHHHHHHcHHcccccccccHEEHEHHccccccccHHHHHHHHHHcHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHcHccccccccHccHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mnsvsietkeaplldstgeikqsqmdpnlfkaaadgsvepfKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLqvnakgdtplhlaakysHFDIVRVLIERAQlaqhgdeepesGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILtredpdypysanny
Flexible Loop (DISEMBL)
mnsvsietkeaplldstgeikqsqmdpNLFKAAADGSVEPFKDMAREVIESsltvhtkntiLHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLaqhgdeepeSGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIltredpdypysanny
Low Complexity Region (SEG)
MNSVSIETKEAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY
Disordered region (IsUnstruct)
*********************************************REVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQL**************FRQMIRMVN****TALHEAVSHGNVEVVKILT*************
Disordered Region (DISOPRED)
**********************SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP*S****
Disordered Region (DISEMBL)
********KEAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQL*********SGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY
Disordered Region (DISPRO)
**SVSIETKEAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSVSIETKEAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q6GQX6	883	Ankyrin repeat and SAM do	yes	no	0.480	0.098	0.317	5e-05
Q68DC2	871	Ankyrin repeat and SAM do	yes	no	0.480	0.099	0.317	9e-05
P59672	1150	Ankyrin repeat and SAM do	no	no	0.546	0.086	0.372	0.0001
Q8BIZ1	1259	Ankyrin repeat and steril	no	no	0.325	0.046	0.358	0.0002
P0C6S7	1260	Ankyrin repeat and steril	yes	no	0.325	0.046	0.358	0.0002
Q7Z6G8	1248	Ankyrin repeat and steril	no	no	0.325	0.047	0.358	0.0002
P46683	200	Ankyrin repeat-containing	yes	no	0.414	0.375	0.325	0.0003
Q92625	1134	Ankyrin repeat and SAM do	no	no	0.480	0.076	0.330	0.0003
Q8VHK2	1430	Caskin-1 OS=Rattus norveg	no	no	0.353	0.044	0.363	0.0003
Q8WXD9	1431	Caskin-1 OS=Homo sapiens	no	no	0.353	0.044	0.363	0.0003

>sp|Q6GQX6|ANKS6_MOUSE Ankyrin repeat and SAM domain-containing protein 6 OS=Mus musculus GN=Anks6 PE=2 SV=2

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 77  KFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           + V+EI +  P  +  VN  G TPL LAA   H  +V++L+E+     H D + +  +  
Sbjct: 297 QLVKEIADEDPNHVNLVNGDGATPLMLAAVTGHLPLVQLLVEK-----HADMDKQDSVHG 351

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
           +            TAL +A  HGN E+VK L  +  D    A N
Sbjct: 352 W------------TALMQATYHGNKEIVKYLLNQGADVALRAKN 383

Required for renal function.
Mus musculus (taxid: 10090)

>sp|Q68DC2|ANKS6_HUMAN Ankyrin repeat and SAM domain-containing protein 6 OS=Homo sapiens GN=ANKS6 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 77  KFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           + V+EI +  P+ +  VN  G TPL LAA      +V++L+ER     H D + +  +  
Sbjct: 306 QLVKEIADEDPSHVNLVNGDGATPLMLAAVTGQLALVQLLVER-----HADVDKQDSVHG 360

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
           +            TAL +A  HGN E+VK L  +  D    A N
Sbjct: 361 W------------TALMQATYHGNKEIVKYLLNQGADVTLRAKN 392

Required for renal function.

Homo sapiens (taxid: 9606)

>sp|P59672|ANS1A_MOUSE Ankyrin repeat and SAM domain-containing protein 1A OS=Mus musculus GN=Anks1a PE=1 SV=3

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 79  VEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE--- 135
           V E+L    AL    ++KG  PLHLAA      IVR+LI+  Q   H     ++ +E   
Sbjct: 91  VVEVLLRNDALTNVADSKGCYPLHLAAWKGDAQIVRLLIQ--QGPSHTRVNEQNALEIRE 148

Query: 136 -----AFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
                 F   I   NN+  TALH A  +G+ EVVK L  E  D P   NN
Sbjct: 149 LKKYGPFDPYINAKNNDNETALHCAAQYGHTEVVKALLEELTD-PTMRNN 197

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Mus musculus (taxid: 10090)

>sp|Q8BIZ1|ANS1B_MOUSE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Mus musculus GN=Anks1b PE=1 SV=3

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 19/78 (24%)

Query: 90  LLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           L+  N +  TPLHLAA+  H  +V+VL+             E+G++   Q       EK 
Sbjct: 187 LMSCNTRKHTPLHLAARNGHKAVVQVLL-------------EAGMDVSCQ------TEKG 227

Query: 150 TALHEAVSHGNVEVVKIL 167
           +ALHEA   G V+VV++L
Sbjct: 228 SALHEAALFGKVDVVRVL 245

Isoform 2 may participate in the regulation of nucleoplasmic coilin protein interactions in neuronal and transformed cells.

Mus musculus (taxid: 10090)

>sp|P0C6S7|ANS1B_RAT Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Rattus norvegicus GN=Anks1b PE=1 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 19/78 (24%)

Query: 90  LLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           L+  N +  TPLHLAA+  H  +V+VL+             E+G++   Q       EK 
Sbjct: 187 LMSCNTRKHTPLHLAARNGHKAVVQVLL-------------EAGMDVSCQ------TEKG 227

Query: 150 TALHEAVSHGNVEVVKIL 167
           +ALHEA   G V+VV++L
Sbjct: 228 SALHEAALFGKVDVVRVL 245

Isoform 3 can regulate global protein synthesis by altering nucleolar numbers.

Rattus norvegicus (taxid: 10116)

>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 19/78 (24%)

Query: 90  LLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           L+  N +  TPLHLAA+  H  +V+VL+             E+G++   Q       EK 
Sbjct: 187 LMSCNTRKHTPLHLAARNGHKAVVQVLL-------------EAGMDVSCQ------TEKG 227

Query: 150 TALHEAVSHGNVEVVKIL 167
           +ALHEA   G V+VV++L
Sbjct: 228 SALHEAALFGKVDVVRVL 245

Isoform 4 may play a role as a modulator of APP processing. Overexpression can down-regulate APP processing.

Homo sapiens (taxid: 9606)

>sp|P46683|YAR1_YEAST Ankyrin repeat-containing protein YAR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAR1 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 99  TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSH 158
           T LH+AA   H + VR ++E    A           E  +  +  VN   NTALH A  +
Sbjct: 52  TALHMAAANGHIETVRYILETVSRANSA--------EDLKAFVNEVNKTGNTALHWASLN 103

Query: 159 GNVEVVKILTREDPDYPYSANNY 181
           G ++VVK+L  E    P+  N +
Sbjct: 104 GKLDVVKLLCDEYEADPFIRNKF 126

Required for normal rate of cell proliferation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 19/106 (17%)

Query: 93  VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEP-----ESGIEAFRQMIRMV--- 144
           V++ G TPLH AA   H D+V VL+    L    D +       +  +   Q++R++   
Sbjct: 76  VDSTGYTPLHHAALNGHKDVVEVLLRNDALTNVADSKGCYPLHLAAWKGDAQIVRLLIHQ 135

Query: 145 ----------NNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
                     NN+  TALH A  +G+ EVVK+L  E  D P   NN
Sbjct: 136 GPSHTRVNEQNNDNETALHCAAQYGHTEVVKVLLEELTD-PTMRNN 180

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Homo sapiens (taxid: 9606)

>sp|Q8VHK2|CSKI1_RAT Caskin-1 OS=Rattus norvegicus GN=Caskin1 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 24/88 (27%)

Query: 85  ICPALLL-----QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
           +C ALL        +  G +PLHLAAK  H DI+R+L+             ++GI+  RQ
Sbjct: 172 MCAALLEPRPGDTTDPNGTSPLHLAAKNGHIDIIRLLL-------------QAGIDINRQ 218

Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                  +  TALHEA   G  EVV++L
Sbjct: 219 ------TKSGTALHEAALCGKTEVVRLL 240

May link the scaffolding protein CASK to downstream intracellular effectors.

Rattus norvegicus (taxid: 10116)

>sp|Q8WXD9|CSKI1_HUMAN Caskin-1 OS=Homo sapiens GN=CASKIN1 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 24/88 (27%)

Query: 85  ICPALLL-----QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
           +C ALL        +  G +PLHLAAK  H DI+R+L+             ++GI+  RQ
Sbjct: 172 MCAALLEPRPGDATDPNGTSPLHLAAKNGHIDIIRLLL-------------QAGIDINRQ 218

Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                  +  TALHEA   G  EVV++L
Sbjct: 219 ------TKSGTALHEAALCGKTEVVRLL 240

May link the scaffolding protein CASK to downstream intracellular effectors.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
224127104	405	predicted protein [Populus trichocarpa]	0.889	0.397	0.473	2e-33
224157601	254	predicted protein [Populus trichocarpa]	0.828	0.590	0.483	2e-33
224127081	227	predicted protein [Populus trichocarpa]	0.839	0.669	0.490	2e-33
224127098	399	predicted protein [Populus trichocarpa]	0.839	0.380	0.490	2e-33
224127096	219	predicted protein [Populus trichocarpa]	0.839	0.694	0.503	2e-33
224127093	281	predicted protein [Populus trichocarpa]	0.839	0.540	0.484	6e-33
224127089	217	predicted protein [Populus trichocarpa]	0.839	0.700	0.471	1e-31
224127106	575	predicted protein [Populus trichocarpa]	0.834	0.262	0.470	1e-31
224127079	394	predicted protein [Populus trichocarpa]	0.828	0.380	0.464	2e-31
255585399	575	ankyrin repeat-containing protein, putat	0.839	0.264	0.465	4e-31

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 110/167 (65%), Gaps = 6/167 (3%)

Query: 14  LDSTGEIKQ-SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETE 72
           + S+ ++K+ S MDP LFKAAA+G ++PF+    +     L    +NTILH+ +  Q  E
Sbjct: 1   MGSSEKMKRISYMDPVLFKAAAEGDIDPFEKY--QTCLDQLLTPDENTILHVYLGNQSRE 58

Query: 73  NASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPES 132
              T FV  ILE+CP LL Q N KG+ PLHLAA Y H ++V+VLI+RA+       + ES
Sbjct: 59  PELTDFVVIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP---TDSES 115

Query: 133 GIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN 179
           G+   ++M+RM N E++TALHEA  H    VV+ILT+EDP++PYSAN
Sbjct: 116 GVTEAKKMLRMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSAN 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224157601|ref|XP_002337868.1| predicted protein [Populus trichocarpa] gi|222869936|gb|EEF07067.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 105/155 (67%), Gaps = 5/155 (3%)

Query: 25  MDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILE 84
           MDP L+KAA +G+++PF++   +     L    +NTIL + +  Q TE  ST FV +ILE
Sbjct: 13  MDPVLYKAAEEGNIDPFENC--QTCLDQLLTPDENTILLVYLRNQTTEPKSTDFVYKILE 70

Query: 85  ICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMV 144
            CP LL Q N KG+TPLHLAA+Y H ++V++LIERA+       +PES +   + M+RM 
Sbjct: 71  RCPPLLFQANKKGETPLHLAARYGHANVVKLLIERAEALP---SDPESRVTKAKMMLRMT 127

Query: 145 NNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN 179
           N E++TALHEA  +    VV+ILT+EDP++PYSAN
Sbjct: 128 NGERDTALHEAARNNQSHVVEILTKEDPEFPYSAN 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127081|ref|XP_002329387.1| predicted protein [Populus trichocarpa] gi|222870437|gb|EEF07568.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 103/157 (65%), Gaps = 5/157 (3%)

Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           S MDP LFKAAA+G ++PF+    +     L    +NTILH+ +  Q  E   T FV  I
Sbjct: 11  SYMDPVLFKAAAEGDIDPFEKY--QTCLDQLLTPDENTILHVYLGNQSREPELTDFVVII 68

Query: 83  LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIR 142
           LE+CP LL Q N KG+ PLHLAA Y H ++V+VLI+RA+       + ESG+   ++M+R
Sbjct: 69  LEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP---TDSESGVTEAKKMLR 125

Query: 143 MVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN 179
           M N E++TALHEA  H    VV+ILT+EDP++PYSAN
Sbjct: 126 MTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSAN 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 103/157 (65%), Gaps = 5/157 (3%)

Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           S MDP LFKAAA+G ++PF+    +     L    +NTILH+ +  Q  E   T FV  I
Sbjct: 5   SYMDPVLFKAAAEGDIDPFEKY--QTCLDQLLTPDENTILHVYLGNQSREPELTDFVVII 62

Query: 83  LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIR 142
           LE+CP LL Q N KG+ PLHLAA Y H ++V+VLI+RA+       + ESG+   ++M+R
Sbjct: 63  LEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP---TDSESGVTEAKKMLR 119

Query: 143 MVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN 179
           M N E++TALHEA  H    VV+ILT+EDP++PYSAN
Sbjct: 120 MTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSAN 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127096|ref|XP_002329393.1| predicted protein [Populus trichocarpa] gi|222870443|gb|EEF07574.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 110/157 (70%), Gaps = 5/157 (3%)

Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           + MDP LFKAA  G++ PF++   +   + L    +NTILH+ +  Q +E  ST FV++I
Sbjct: 3   TYMDPVLFKAAEAGNIGPFEN--DQTCLNQLFTPDENTILHVCLGNQSSEPESTYFVDKI 60

Query: 83  LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIR 142
           LE+CP LLLQ N KG+ PLHLAA+Y H ++VRVLI+RA+ A+  D  PESG+   ++M+R
Sbjct: 61  LEMCPPLLLQANKKGEIPLHLAARYGHSNVVRVLIDRAR-ARPTD--PESGVTEAKKMLR 117

Query: 143 MVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN 179
           M N E++TALHEA  +    VV+ILT+EDP + YSAN
Sbjct: 118 MTNVEQDTALHEAARNRRGHVVEILTKEDPYFSYSAN 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127093|ref|XP_002329392.1| predicted protein [Populus trichocarpa] gi|222870442|gb|EEF07573.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 104/157 (66%), Gaps = 5/157 (3%)

Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           + MDP LFKAA  G + PF++   +     L    +NTILH+ +  Q  E   T FV++I
Sbjct: 3   TYMDPVLFKAAEAGDIGPFENY--QTCLDQLLTPDENTILHVYLGNQSREPEFTDFVDKI 60

Query: 83  LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIR 142
           LE+CP LLLQ N KG+ PLHLAA+Y H ++V VLIERA+       +PESG+   ++M+R
Sbjct: 61  LEMCPPLLLQANKKGEIPLHLAARYGHSNVVGVLIERAEALP---TDPESGVSEAKKMLR 117

Query: 143 MVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN 179
           M N+E++TALHEA  +    VV+ILT EDP++ YSAN
Sbjct: 118 MTNDEQDTALHEAARNMRSHVVEILTEEDPEFSYSAN 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127089|ref|XP_002329390.1| predicted protein [Populus trichocarpa] gi|222870440|gb|EEF07571.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 106/157 (67%), Gaps = 5/157 (3%)

Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           + MDP LFKAA  G++ PF++    +  + L    +NTILH+ +  Q  E  ST FV+ I
Sbjct: 3   TYMDPLLFKAAEAGNIGPFENYQTRL--NQLLTPDENTILHVYLGNQSREPESTDFVDII 60

Query: 83  LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIR 142
           LE+CP LLLQ N KG+ PLHLAA+Y H ++V+VLI+ A+       +PESG+   ++M+R
Sbjct: 61  LEMCPPLLLQANEKGEIPLHLAARYGHSNVVKVLIDCAKALP---TDPESGLTKAQKMLR 117

Query: 143 MVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN 179
           M N E++TALHEA  +    +V+ILT+EDP++ YSAN
Sbjct: 118 MANEEQDTALHEAARNRRSHLVEILTKEDPEFSYSAN 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 103/155 (66%), Gaps = 4/155 (2%)

Query: 25  MDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILE 84
           MDP LFKAA  G++ PF++     +   LT   +NTILH+ +  Q +E  ST FV++ LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLT-PDENTILHVYLKNQSSEPESTDFVDKFLE 59

Query: 85  ICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMV 144
            CP LL Q N +G+TPLHL A+Y H ++V+VLI+RA+       +PESG+   + M+RM 
Sbjct: 60  RCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALP---ADPESGVTKAKMMLRMT 116

Query: 145 NNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN 179
           N E++TALHEA  +    VV+ILT+EDP++ Y AN
Sbjct: 117 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPAN 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 5/155 (3%)

Query: 25  MDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILE 84
           MDP LFKAA  G++ PF++    +  + L    +NTILH+ +  Q +E  ST FV++ LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTSL--NQLLTADENTILHVYLKNQSSEPESTDFVDKFLE 58

Query: 85  ICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMV 144
            CP LL Q N +G+TPLHLAA+  H ++V+VLI+RA+       +PESG+   + M+RM 
Sbjct: 59  RCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALP---ADPESGVTKAKMMLRMT 115

Query: 145 NNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN 179
           N E++TALHEA  +    VV+ILT+EDP++ Y AN
Sbjct: 116 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPAN 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 107/159 (67%), Gaps = 7/159 (4%)

Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           + M  +L+KAA DG ++PFK+ A  +    L    K+TILH+N+        ST FV+E 
Sbjct: 25  TYMSLDLYKAAEDGKIDPFKNFAGPL--DLLVTPIKDTILHLNL--ASPSERSTSFVKEA 80

Query: 83  LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIR 142
           L++CP +LLQ+NA GDT LH+AA+Y H DIV++LIE  + AQH D   ES  EA RQM+R
Sbjct: 81  LDMCPQILLQINADGDTLLHIAARYGHLDIVKLLIEHTR-AQHQDL--ESAGEAVRQMLR 137

Query: 143 MVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY 181
           M N  K TALHEA  + + ++V++L  +DPD+ +S+N++
Sbjct: 138 MTNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSNDF 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.828	0.216	0.283	5.1e-10
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.812	0.219	0.275	1.2e-08
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.580	0.196	0.318	1.4e-08
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.917	0.258	0.283	1.9e-08
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.817	0.258	0.276	2.5e-06
UNIPROTKB|E1C898	1155	ANKS1A "Uncharacterized protei	0.569	0.089	0.363	2.8e-05
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.497	0.206	0.306	0.00013
SGD|S000006160	200	YAR1 "Ankyrin-repeat containin	0.491	0.445	0.323	0.00014
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.491	0.194	0.306	0.00014
UNIPROTKB|F1RZ13	1153	ANKS1A "Uncharacterized protei	0.569	0.089	0.354	0.00014

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 45/159 (28%), Positives = 76/159 (47%)

Query:    24 QMDPNLFKAAADGSVEPFKDM-AREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
             +M P +F   +DG+ E  + + +R +  + +  +T ++ILH+ +     E      V+EI
Sbjct:    97 RMIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLE-----LVKEI 151

Query:    83 LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIR 142
             +  CP LLL+ N+ G TPLH+AA   H  IV   +     +       ES  E     + 
Sbjct:   152 VCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEES--ERMNPYV- 208

Query:   143 MVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY 181
             + + + NTAL+ A+     E+   L   + D P+  N Y
Sbjct:   209 LKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKY 247

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 44/160 (27%), Positives = 76/160 (47%)

Query:    24 QMDPNLFKAAADGSVEPFKDM-AREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
             +M P +F   ++G  E  + + +       +  +T ++ILHI       +    + V+EI
Sbjct:    66 EMTPEIFGGMSNGEKECLEKLRSNGTPMERVKSNTGDSILHI-----AAKWGHLELVKEI 120

Query:    83 LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER--AQLAQHGDEEPESGIEAFRQM 140
             +  CP LL + N+   TPLH+A    H  +V  L+    + LA    EE E G+     +
Sbjct:   121 IFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESE-GLNP--HV 177

Query:   141 IRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
             ++  + + NTAL+ A+    +E+   L   D D P+  NN
Sbjct:   178 LK--DEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNN 215

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 36/113 (31%), Positives = 59/113 (52%)

Query:    60 TILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER 119
             T LH+ +     +  + + V++I+EI P+L+   N K DTPLHLAA+  H  I+ +++E 
Sbjct:    29 TFLHLAV-----KLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLES 83

Query:   120 AQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDP 172
                     E  E  +    ++  MVN +  T LH AV +G+VE +     + P
Sbjct:    84 TA---ESIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAP 133

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 51/180 (28%), Positives = 76/180 (42%)

Query:     5 SIETKEAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNT---I 61
             SI+     L D  GE     M+P +F A   G+V+ F D  +    + L      T    
Sbjct:    18 SIQMLVTNLYDLPGEYVS--MNPEIFSAMRAGNVK-FLDKMKTNNNTPLACFRNETGDFT 74

Query:    62 LHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQ 121
             LH+       E      V+ I+  CP LLL+ N+K   PLH AA      +V   + R  
Sbjct:    75 LHLAAAWGRLE-----LVKRIVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVN 129

Query:   122 LAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY 181
                 G  E E   E    +  M + + NTALH A+  G+++    L + +    + ANN+
Sbjct:   130 EISDGLSEEER--ERVN-LYAMKDIDGNTALHLALKGGHLKTAACLVKANHLASFLANNH 186

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 44/159 (27%), Positives = 71/159 (44%)

Query:    24 QMDPNLFKAAADGSVEPFKDMAREVIE--SSLTVHTKNTILHINIICQETENASTKFVEE 81
             QM+  +F   +DG  E   +M + V    + L     +++LH+       E      V+ 
Sbjct:    80 QMNTEVFSGLSDGDKECL-EMLKGVGTPMACLKSDRGDSVLHLAARWGHLE-----LVKN 133

Query:    82 ILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
             I+  CP L+L++N K   PLH+AA   H  IV  L+  A +    D   E   E     +
Sbjct:   134 IISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALV--ASVTFFSDRLAEEDRERLNPYV 191

Query:   142 RMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
              + +   NTALH A+    +E+   L  E+ +  +  NN
Sbjct:   192 -LRDKYGNTALHLAIEGRYMEMAASLVNENQNASFLENN 229

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C898 ANKS1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 40/110 (36%), Positives = 54/110 (49%)

Query:    77 KFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
             K V E+L    AL    + KG  PLHLAA     DIV++LI +       +E+    I+ 
Sbjct:   100 KDVVEVLLRNDALTNVADCKGCYPLHLAAWKGDADIVKLLIHQGPSHTKVNEQNALEIKE 159

Query:   137 FRQM------IRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
              ++       I   NN+  TALH A  +G+ EVVK+L  E  D P   NN
Sbjct:   160 LKKYGPFDPYINAKNNDNETALHCAAQYGHTEVVKVLLEELTD-PTMRNN 208

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 30/98 (30%), Positives = 49/98 (50%)

Query:    25 MDPNLFKAAADGSVEPFKDMARE---VIESSLTVHTKNTILHINIICQETENASTKFVEE 81
             MDP L  AA  GS+  F  +  E   ++++   V   NT LH+      ++N    F  E
Sbjct:     1 MDPRLQHAAETGSINDFYALIEENPYILDNINAVPFVNTPLHV---AAASDNIP--FAME 55

Query:    82 ILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER 119
             +L + P+   ++N  G +PLHLA +  H + +  L+ R
Sbjct:    56 MLNLKPSFARKLNTSGYSPLHLAVEKDHREFITWLLWR 93

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000006160 YAR1 "Ankyrin-repeat containing, nucleocytoplasmic shuttling chaperone" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 108 (43.1 bits), Expect = 0.00014, P = 0.00014
 Identities = 32/99 (32%), Positives = 50/99 (50%)

Query:    85 ICPALLLQVN-AKGD-TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIR 142
             + P LL     ++ D T LH+AA   H + VR ++E    A   ++     ++AF   + 
Sbjct:    36 VSPELLSTCKESESDSTALHMAAANGHIETVRYILETVSRANSAED-----LKAF---VN 87

Query:   143 MVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY 181
              VN   NTALH A  +G ++VVK+L  E    P+  N +
Sbjct:    88 EVNKTGNTALHWASLNGKLDVVKLLCDEYEADPFIRNKF 126

GO:0005634 "nucleus" evidence=IGI;IDA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IGI;IMP

GO:0051082 "unfolded protein binding" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0032880 "regulation of protein localization" evidence=IMP;IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IGI;IMP

GO:0006970 "response to osmotic stress" evidence=IMP

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
 Identities = 30/98 (30%), Positives = 54/98 (55%)

Query:    25 MDPNLFKAAA-DGSVEPFKDMARE---VIESSLTVHTKNTILHINIICQETENASTKFVE 80
             MD    +AAA  G+++   ++  E   V++ +  V   NT LH+  +     N  T+F  
Sbjct:     1 MDQRSLEAAAKSGNIDLLYELIHEDPYVLDKTDHVPFVNTPLHVAAV-----NGKTEFAM 55

Query:    81 EILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIE 118
             E++ + P+   ++NA G TPLHLA ++ HF +V  +++
Sbjct:    56 EMMNLKPSFARKLNADGLTPLHLAVEHGHFWLVLEVVK 93

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1RZ13 ANKS1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
 Identities = 39/110 (35%), Positives = 53/110 (48%)

Query:    77 KFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
             K V E+L    AL    + KG  PLHLAA      IVR+LI +       +E+    I+ 
Sbjct:    91 KDVVEVLLRNDALTNVADCKGCYPLHLAAWKGDAQIVRLLIHQGPSHTKVNEQNALEIKE 150

Query:   137 FRQM------IRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
              ++       +   NN+  TALH A  +G+ EVVK+L  E  D P   NN
Sbjct:   151 LKKYGPFDTYLNAKNNDNETALHCAAQYGHTEVVKVLLEELTD-PTMRNN 199

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 64.7 bits (158), Expect = 6e-14
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 32/143 (22%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  AA++G +E    + + ++E+   V+ K+    T LH+        N   + V+ +LE
Sbjct: 11  LHLAASNGHLE----VVKLLLENGADVNAKDNDGRTPLHLAAK-----NGHLEIVKLLLE 61

Query: 85  ICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMV 144
              A +   +  G+TPLHLAA+  + D+V++L++                      +   
Sbjct: 62  KG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKH------------------GADVNAR 102

Query: 145 NNEKNTALHEAVSHGNVEVVKIL 167
           + +  T LH A  +G++EVVK+L
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 21/99 (21%)

Query: 75  STKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGI 134
           + + V+ +LE    + L      DT LHLAA+  + +IV++L+E      HG +      
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLE------HGAD------ 53

Query: 135 EAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
                 +   + + NTALH A  +GN+E+VK+L     D
Sbjct: 54  ------VNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 18/82 (21%)

Query: 92  QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
             +  G TPLHLAA   H ++V++L+E      +G              +   +N+  T 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLE------NGA------------DVNAKDNDGRTP 43

Query: 152 LHEAVSHGNVEVVKILTREDPD 173
           LH A  +G++E+VK+L  +  D
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGAD 65

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.5 bits (119), Expect = 6e-09
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 18/71 (25%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G T LH AA     ++V+ L+E              G++     I   + + NTALH A 
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-------------KGVD-----INRTDEDGNTALHIAA 42

Query: 157 SHGNVEVVKIL 167
            +GN+EV+K+L
Sbjct: 43  ENGNLEVLKLL 53

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 24/178 (13%)

Query: 1   MNSVSIETKEAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKN- 59
           +  +   +    LL    +   +  D +        + +    + + ++ S   V+ K+ 
Sbjct: 45  LALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA 104

Query: 60  ---TILHINIICQETENASTKFVEEILE--ICPALLLQVNAKGDTPLHLAAKYSHFDIVR 114
              T LH+  +       + +  + +LE      +    +  G+TPLH AA     DIV 
Sbjct: 105 DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVE 164

Query: 115 VLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDP 172
           +L+E          +P S            N+   TAL  A  +G +E+VK+L  +  
Sbjct: 165 LLLEAGA-------DPNS-----------RNSYGVTALDPAAKNGRIELVKLLLDKGL 204

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPA 88
           L  AA +G +E  K +  +  + +      NT LH+        N +   V+ +L+   A
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA-----RNGNLDVVKLLLK-HGA 97

Query: 89  LLLQVNAKGDTPLHLAAKYSHFDIVRVLI 117
            +   +  G TPLHLAAK  H ++V++L+
Sbjct: 98  DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 20/67 (29%)

Query: 101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN 160
           LHLAAK  + ++V++L+E       G                +   + +TALH A  +GN
Sbjct: 1   LHLAAKNGNLELVKLLLE------KG--------------ADVNLGDTDTALHLAARNGN 40

Query: 161 VEVVKIL 167
           +E+VK+L
Sbjct: 41  LEIVKLL 47

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 12/24 (50%), Positives = 19/24 (79%)

Query: 96  KGDTPLHLAAKYSHFDIVRVLIER 119
            G+TPLHLAA+  H ++V++L+E 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 32/141 (22%)

Query: 35  DGSVEPF----KDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILEIC 86
           D S+ P     KDM + +++  + V+ K+    T LH  I     +    + ++ + E  
Sbjct: 93  DTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAI-----KKGDLESIKMLFEYG 147

Query: 87  PALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNN 146
             + ++ +  G  P+H+A K++ FDI+++L+E+   A                   + +N
Sbjct: 148 ADVNIE-DDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN------------------VKDN 188

Query: 147 EKNTALHEAVSHGNVEVVKIL 167
              + LH A  +G+   +K+L
Sbjct: 189 NGESPLHNAAEYGDYACIKLL 209

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 18/74 (24%)

Query: 82  ILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
           +LE  P  L   +  G+TPLHLAAKY   ++V+ L++                      +
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP------------------GVDL 42

Query: 142 RMVNNEKNTALHEA 155
            + +++  TAL  A
Sbjct: 43  NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 149 NTALHEAVSHGNVEVVKIL 167
           NT LH A  +G++EVVK+L
Sbjct: 3   NTPLHLAARNGHLEVVKLL 21

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.001
 Identities = 11/24 (45%), Positives = 19/24 (79%)

Query: 96  KGDTPLHLAAKYSHFDIVRVLIER 119
            G+TPLHLAA+  + ++V++L+E 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEH 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.1 bits (79), Expect = 0.002
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 147 EKNTALHEAVSHGNVEVVKILTREDPD 173
           +  T LH A  +GN+EVVK+L  +  D
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 7/28 (25%), Positives = 20/28 (71%)

Query: 90  LLQVNAKGDTPLHLAAKYSHFDIVRVLI 117
           + + +  G+T LH+AA+  + +++++L+
Sbjct: 27  INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 18/162 (11%)

Query: 20  IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFV 79
            K+  +   L    A    E    +  +   ++      +  L ++    + ++   K  
Sbjct: 36  DKKLNLYLELALLPAASLSELLLKLIVDRHLAA---RDLDGRLPLHSAASKGDDKIVKL- 91

Query: 80  EEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
              L    A +   +A GDTPLHLAA   +     + + +  L    D +         +
Sbjct: 92  ---LLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV-----NNLR 143

Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY 181
                    NT LH A  +G+ ++V++L     D P S N+Y
Sbjct: 144 DEDG-----NTPLHWAALNGDADIVELLLEAGAD-PNSRNSY 179

Length = 235

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 10/24 (41%), Positives = 19/24 (79%)

Query: 96  KGDTPLHLAAKYSHFDIVRVLIER 119
            G TPLHLAA+  + ++V++L+++
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDK 24

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.92
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.91
KOG0510	929	consensus Ankyrin repeat protein [General function	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02874	434	ankyrin repeat protein; Provisional	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA02736	154	Viral ankyrin protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.89
PHA03100	480	ankyrin repeat protein; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA02859	209	ankyrin repeat protein; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.89
PHA02876	682	ankyrin repeat protein; Provisional	99.89
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.89
PHA03095	471	ankyrin-like protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0508	615	consensus Ankyrin repeat protein [General function	99.87
PHA02798	489	ankyrin-like protein; Provisional	99.86
PHA02876	682	ankyrin repeat protein; Provisional	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0508	615	consensus Ankyrin repeat protein [General function	99.86
PHA02946	446	ankyin-like protein; Provisional	99.86
PHA02795	437	ankyrin-like protein; Provisional	99.85
PHA02989	494	ankyrin repeat protein; Provisional	99.85
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
KOG0510	929	consensus Ankyrin repeat protein [General function	99.84
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.84
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.84
PHA02917	661	ankyrin-like protein; Provisional	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
PHA02917	661	ankyrin-like protein; Provisional	99.82
PHA02730	672	ankyrin-like protein; Provisional	99.81
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.81
PHA02741	169	hypothetical protein; Provisional	99.8
PHA02730	672	ankyrin-like protein; Provisional	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.79
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.76
PHA02743	166	Viral ankyrin protein; Provisional	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
PHA02792	631	ankyrin-like protein; Provisional	99.75
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.74
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
PHA02884	300	ankyrin repeat protein; Provisional	99.74
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.72
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.71
KOG0514	452	consensus Ankyrin repeat protein [General function	99.7
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.69
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.69
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.69
PHA02736	154	Viral ankyrin protein; Provisional	99.68
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.68
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.68
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.67
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.62
PHA02792	631	ankyrin-like protein; Provisional	99.62
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.62
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.58
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.57
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.56
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.55
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.53
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.26
PF13606	30	Ank_3: Ankyrin repeat	99.16
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.15
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.14
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.13
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.09
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.04
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.0
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.94
KOG0522	560	consensus Ankyrin repeat protein [General function	98.93
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.9
PF13606	30	Ank_3: Ankyrin repeat	98.84
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.83
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.82
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.78
KOG0522	560	consensus Ankyrin repeat protein [General function	98.76
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.73
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.66
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.6
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.58
KOG2384	223	consensus Major histocompatibility complex protein	98.52
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.28
KOG0511	516	consensus Ankyrin repeat protein [General function	98.26
KOG0511	516	consensus Ankyrin repeat protein [General function	98.15
KOG2384	223	consensus Major histocompatibility complex protein	97.98
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.97
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.96
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.8
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.43
KOG2505	591	consensus Ankyrin repeat protein [General function	97.2
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.11
KOG2505	591	consensus Ankyrin repeat protein [General function	96.65
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.85
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.22
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.86
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.82
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.11

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.1e-31  Score=174.15  Aligned_cols=138  Identities=21%  Similarity=0.226  Sum_probs=101.7

Q ss_pred             hhhcccCCCHHHHHHHHcCCcHHHHHHHH-HhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccC
Q 041785           18 GEIKQSQMDPNLFKAAADGSVEPFKDMAR-EVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAK   96 (181)
Q Consensus        18 ~~~~~~~~~t~l~~a~~~g~~~~~~~ll~-~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   96 (181)
                      ...+.++++||||+||..|+.+++.+|++ .+..++.+|..|+||||+|  +..|+.++++.|+..   .+++++..+..
T Consensus        31 ~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia--~s~g~~evVk~Ll~r---~~advna~tn~  105 (226)
T KOG4412|consen   31 NARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIA--ASNGNDEVVKELLNR---SGADVNATTNG  105 (226)
T ss_pred             hccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhh--hhcCcHHHHHHHhcC---CCCCcceecCC
Confidence            33445577888888888888888888884 4566666777788888888  888888888877665   47788888888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 041785           97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPY  176 (181)
Q Consensus        97 g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  176 (181)
                      |.|+||+|+.+|+.+++.+|++.|+.+                  +.+|..|.||||-|+..|.++++++|++.|+.+|+
T Consensus       106 G~T~LHyAagK~r~eIaqlLle~ga~i------------------~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~  167 (226)
T KOG4412|consen  106 GQTCLHYAAGKGRLEIAQLLLEKGALI------------------RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT  167 (226)
T ss_pred             CcceehhhhcCChhhHHHHHHhcCCCC------------------cccccccCchhHHHHhccchhhHHHHHhcCCCCCc
Confidence            888888888888888888888888776                  66666666666666666666666666666666665


Q ss_pred             Cc
Q 041785          177 SA  178 (181)
Q Consensus       177 ~~  178 (181)
                      ++
T Consensus       168 qD  169 (226)
T KOG4412|consen  168 QD  169 (226)
T ss_pred             cc
Confidence            54

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.2e-30  Score=166.76  Aligned_cols=135  Identities=24%  Similarity=0.286  Sum_probs=128.4

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .+..|.||||+|+..|+.++|+.|+.. |++++..+..|.|+||+|  +..+..++.++|++.    |+.++.+|..|.|
T Consensus        68 kDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyA--agK~r~eIaqlLle~----ga~i~~kD~~~qt  141 (226)
T KOG4412|consen   68 KDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYA--AGKGRLEIAQLLLEK----GALIRIKDKQGQT  141 (226)
T ss_pred             ccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhh--hcCChhhHHHHHHhc----CCCCcccccccCc
Confidence            366799999999999999999999997 899999999999999999  999999999999997    9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |||-|+..|..+++++|+..|+.+                  |.+|..|+||||.|...|+.++..+|+++|+++...++
T Consensus       142 plHRAAavGklkvie~Li~~~a~~------------------n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edk  203 (226)
T KOG4412|consen  142 PLHRAAAVGKLKVIEYLISQGAPL------------------NTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDK  203 (226)
T ss_pred             hhHHHHhccchhhHHHHHhcCCCC------------------CcccccCccHHHHHHhccCchHHHHHHHhccceeeccc
Confidence            999999999999999999999887                  99999999999999999999999999999999987765

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.4e-26  Score=166.58  Aligned_cols=152  Identities=13%  Similarity=0.099  Sum_probs=111.3

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .....|.||||+|+..|+.++++.|++.|++.+..  .|.||||+|  +..++.+++++|+..    |++++.++..|+|
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~A--a~~g~~eiV~lLL~~----Gadvn~~d~~G~T   96 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQA--ATLEDTKIVKILLFS----GMDDSQFDDKGNT   96 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHH--HHCCCHHHHHHHHHC----CCCCCCCCCCCCC
Confidence            34556888888888888888888888888776543  467888888  888888888888875    8888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCc-chHHH---------HHHHhhc----cc-CCCchHHHHHHHcCCHHHH
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPE-SGIEA---------FRQMIRM----VN-NEKNTALHEAVSHGNVEVV  164 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~----~~-~~g~t~l~~A~~~~~~~~~  164 (181)
                      |||+|+..++.+++++|++.|+++...+..+. .+...         .+.++..    .| ..|.||||+|+..|+.+++
T Consensus        97 pLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv  176 (284)
T PHA02791         97 ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM  176 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHH
Confidence            88888888888888888888877654443331 11111         1222221    22 2478888888888888888


Q ss_pred             HHHHHcCCCCCCCcC
Q 041785          165 KILTREDPDYPYSAN  179 (181)
Q Consensus       165 ~~Ll~~g~~~~~~~~  179 (181)
                      ++|+++|++++.+++
T Consensus       177 ~lLL~~gAd~n~~d~  191 (284)
T PHA02791        177 ILLLDYMTSTNTNNS  191 (284)
T ss_pred             HHHHHCCCCCCcccC
Confidence            888888888776654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.8e-25  Score=161.96  Aligned_cols=149  Identities=15%  Similarity=0.024  Sum_probs=111.4

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCC-cHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGD-TPLH  102 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-t~L~  102 (181)
                      .+.||||+|+..|+.++++.|+..|++.+.++..|.||||+|  +..++.+++++|+..    +++++.++..|+ ||||
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~A--a~~g~~eivk~Ll~~----gadin~~~~~g~~TpL~  133 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYA--VDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFY  133 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCcCccCCCCCcHHHH
Confidence            467888888888888888888888887777788888888888  888888888888876    777777776664 7888


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCCchH-HHHHHHcCCHHHHHH
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTA-LHEAVSHGNVEVVKI  166 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~  166 (181)
                      +|+..++.+++++|++.++..... ..+..++...               +.+++.++..|.|| ||+|+..|+.+++++
T Consensus       134 ~Aa~~g~~eivk~LL~~~~~~~d~-~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~l  212 (284)
T PHA02791        134 HAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQA  212 (284)
T ss_pred             HHHHcCCHHHHHHHHhcCCccccc-ccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            888888888888887765432110 0111221111               23457788888987 999999999999999


Q ss_pred             HHHcCCCCCCCcC
Q 041785          167 LTREDPDYPYSAN  179 (181)
Q Consensus       167 Ll~~g~~~~~~~~  179 (181)
                      |+++|++++..+.
T Consensus       213 Ll~~Ga~in~~~~  225 (284)
T PHA02791        213 LFKYDINIYSVNL  225 (284)
T ss_pred             HHHCCCCCccCcc
Confidence            9999999987754

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3.7e-25  Score=170.52  Aligned_cols=154  Identities=19%  Similarity=0.264  Sum_probs=134.8

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.|++++.++..|.||||+|  +..++.+++++|++.    |++++..+..|.||
T Consensus       120 ~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A--~~~~~~~iv~~Ll~~----g~~~n~~~~~g~tp  193 (434)
T PHA02874        120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA--IKHNFFDIIKLLLEK----GAYANVKDNNGESP  193 (434)
T ss_pred             CCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH--HHCCcHHHHHHHHHC----CCCCCCCCCCCCCH
Confidence            345789999999999999999999999999998999999999999  999999999999997    89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH-------------HHHhhcccCCCchHHHHHHHcC-CHHHHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF-------------RQMIRMVNNEKNTALHEAVSHG-NVEVVKI  166 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~  166 (181)
                      ||+|+..|+.+++++|++.|+++......+..+....             +..++.+|..|+||||+|+..+ +.+++++
T Consensus       194 L~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~  273 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDI  273 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHH
Confidence            9999999999999999999988765555444433322             2356788999999999999876 7899999


Q ss_pred             HHHcCCCCCCCcCC
Q 041785          167 LTREDPDYPYSANN  180 (181)
Q Consensus       167 Ll~~g~~~~~~~~~  180 (181)
                      |+++|++++..++.
T Consensus       274 Ll~~gad~n~~d~~  287 (434)
T PHA02874        274 LLYHKADISIKDNK  287 (434)
T ss_pred             HHHCcCCCCCCCCC
Confidence            99999999888653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=8.5e-25  Score=167.59  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=22.3

Q ss_pred             hcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          142 RMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       142 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      +.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~  198 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFG  198 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCC
Confidence            4555566666666666666666666666666655443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=146.74  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=115.6

Q ss_pred             cCCCHHHHHHHHcCCcH----HHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhH---HHHHHHHHhhccccccccc-
Q 041785           23 SQMDPNLFKAAADGSVE----PFKDMAREVIESSLTVHTKNTILHINIICQETENAS---TKFVEEILEICPALLLQVN-   94 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~----~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~-   94 (181)
                      ..+.++||.|++.|+..    +++.|.+.+...+.++..|.||||+|  +..++.+.   +++|+..    |++++.++ 
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~A--a~~g~~~~~~~i~~Ll~~----Gadin~~d~   91 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMV--AWYDRANAVMKIELLVNM----GADINAREL   91 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHH--HHhCccCHHHHHHHHHHc----CCCCCCCCC
Confidence            45667899999999984    44456667777777899999999999  98887655   6777776    99999998 


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHH-hhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785           95 AKGDTPLHLAAKYSHFDIVRVLIE-RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus        95 ~~g~t~L~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      ..|.||||+|+..++.+++++|++ .|+++                  +.++..|.||||+|+..++.+++++|+++|++
T Consensus        92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~------------------~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         92 GTGNTLLHIAASTKNYELAEWLCRQLGVNL------------------GAINYQHETAYHIAYKMRDRRMMEILRANGAV  153 (166)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhccCCCc------------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            589999999999999999999995 78887                  88899999999999999999999999999999


Q ss_pred             CCCCcC
Q 041785          174 YPYSAN  179 (181)
Q Consensus       174 ~~~~~~  179 (181)
                      ++-+++
T Consensus       154 ~~~~~~  159 (166)
T PHA02743        154 CDDPLS  159 (166)
T ss_pred             CCCccc
Confidence            987765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.93  E-value=2.8e-25  Score=169.36  Aligned_cols=152  Identities=21%  Similarity=0.207  Sum_probs=116.3

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhccccccc-CCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTV-HTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      +++|.|+||+|+.+++++++++|+++|++++..+ ..+.||||||  +++|+..++..|+++    |++++.+|.+|.+|
T Consensus        75 D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWA--ar~G~~~vv~lLlqh----GAdpt~~D~~G~~~  148 (600)
T KOG0509|consen   75 DREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWA--ARNGHISVVDLLLQH----GADPTLKDKQGLTP  148 (600)
T ss_pred             CcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHH--HHcCcHHHHHHHHHc----CCCCceecCCCCcH
Confidence            3489999999999999999999999999998655 6799999999  999999999999998    99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhccc-CCCchHHHHHHHcCCHHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVN-NEKNTALHEAVSHGNVEVV  164 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~g~t~l~~A~~~~~~~~~  164 (181)
                      +|+|++.++...+.+|+..+.+++..+..++++..=.               +..+...| .+|.||||+|+..|+..++
T Consensus       149 lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v  228 (600)
T KOG0509|consen  149 LHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAV  228 (600)
T ss_pred             HHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceE
Confidence            9999999999999999999988844444444332111               12233343 5556666666666665555


Q ss_pred             HHHHHcCCCCCCCcC
Q 041785          165 KILTREDPDYPYSAN  179 (181)
Q Consensus       165 ~~Ll~~g~~~~~~~~  179 (181)
                      .+|++.|++.+..+.
T Consensus       229 ~Ll~~g~~~~d~~~~  243 (600)
T KOG0509|consen  229 KLLLEGGADLDKTNT  243 (600)
T ss_pred             ehhhhcCCccccccc
Confidence            555555555554443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.8e-24  Score=151.27  Aligned_cols=136  Identities=14%  Similarity=0.176  Sum_probs=111.7

Q ss_pred             hcccCCCHHHHHHHHcC--CcHHHHHHHHHhccccccc-CCCCchhHHHHhhh---hhhhhHHHHHHHHHhhcccccccc
Q 041785           20 IKQSQMDPNLFKAAADG--SVEPFKDMAREVIESSLTV-HTKNTILHINIICQ---ETENASTKFVEEILEICPALLLQV   93 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g--~~~~~~~ll~~~~~~~~~~-~~g~t~Lh~a~~~~---~~~~~~~~~l~~~~~~~~~~~~~~   93 (181)
                      .....|.||||+|+..+  +.++++.|++.|++++.++ ..|.||||+|  +.   .++.+++++|++.    |++++.+
T Consensus        46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a--~~~~~~~~~eiv~~Ll~~----gadin~~  119 (209)
T PHA02859         46 DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY--LSFNKNVEPEILKILIDS----GSSITEE  119 (209)
T ss_pred             ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH--HHhCccccHHHHHHHHHC----CCCCCCc
Confidence            34456888999888754  7888999998888888665 4788999987  54   3467888888876    8888888


Q ss_pred             ccCCCcHHHHHHH--cCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHH-HHHcCCHHHHHHHHHc
Q 041785           94 NAKGDTPLHLAAK--YSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHE-AVSHGNVEVVKILTRE  170 (181)
Q Consensus        94 ~~~g~t~L~~a~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~-A~~~~~~~~~~~Ll~~  170 (181)
                      +..|.||||+|+.  .++.+++++|++.|+++                  +.+|..|.||||. |+..++.+++++|+++
T Consensus       120 d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi------------------n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~  181 (209)
T PHA02859        120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF------------------LNKDFDNNNILYSYILFHSDKKIFDFLTSL  181 (209)
T ss_pred             CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc------------------ccccCCCCcHHHHHHHhcCCHHHHHHHHHc
Confidence            8889999998875  35788999999888887                  8899999999995 5668899999999999


Q ss_pred             CCCCCCCcC
Q 041785          171 DPDYPYSAN  179 (181)
Q Consensus       171 g~~~~~~~~  179 (181)
                      |++++.+++
T Consensus       182 Gadi~~~d~  190 (209)
T PHA02859        182 GIDINETNK  190 (209)
T ss_pred             CCCCCCCCC
Confidence            999988765

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1e-24  Score=167.17  Aligned_cols=131  Identities=15%  Similarity=0.178  Sum_probs=113.7

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      ..|.||||+|+..|+.++++.|++.|++++..+..|.||||+|  +..++.+++++|++.    +++++.++..|.||||
T Consensus       100 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A--~~~~~~~~v~~Ll~~----g~~~~~~d~~g~TpL~  173 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLA--VMMGDIKGIELLIDH----KACLDIEDCCGCTPLI  173 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhc----CCCCCCCCCCCCCHHH
Confidence            4578888888888888888888888888888888888899988  888888888888886    8888888888889999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCC-chHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK-NTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                      +|+..|+.+++++|++.|+++                  +..+..| .||+|+|+..|+.+++++|+++|++++..
T Consensus       174 ~A~~~g~~eiv~~Ll~~ga~~------------------n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        174 IAMAKGDIAICKMLLDSGANI------------------DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             HHHHcCCHHHHHHHHhCCCCC------------------CcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            998888888888888888887                  6666666 58899999999999999999999999754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=6e-25  Score=167.52  Aligned_cols=130  Identities=18%  Similarity=0.099  Sum_probs=111.1

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      ..+.||||+|+++|++.++..|+++|+++..+|..|.+|||.|  ++.++...+-+++..    +.+++.+|.+|+||||
T Consensus       110 ~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla--~~~~~~~~vayll~~----~~d~d~~D~~grTpLm  183 (600)
T KOG0509|consen  110 VLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLA--AQFGHTALVAYLLSK----GADIDLRDNNGRTPLM  183 (600)
T ss_pred             CCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHH--HHhCchHHHHHHHHh----cccCCCcCCCCCCHHH
Confidence            3468999999999999999999999999999999999999999  999999999999987    8999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCC-CCCcchHHH---------------HHHHhhcccCCCchHHHHHHHc
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGD-EEPESGIEA---------------FRQMIRMVNNEKNTALHEAVSH  158 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~---------------~~~~~~~~~~~g~t~l~~A~~~  158 (181)
                      +|+.+|....++.|+..++.+...+ .++..+++-               .+.+.+.+|.+|.||+.+|..+
T Consensus       184 wAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  184 WAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999888999999988774443 233322222               1356778889999999999877

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=5.1e-24  Score=165.96  Aligned_cols=154  Identities=19%  Similarity=0.166  Sum_probs=118.1

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH---------------------
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI---------------------   82 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~---------------------   82 (181)
                      -+.||||.|+..|+.++++.|++.|++++.++..|.||||+|  |..++.++++.|+..                     
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~  113 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII--CKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN  113 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence            467899999999999999999999999998999999999999  876665544433321                     


Q ss_pred             ---------------------------------------HhhccccccccccC-CCcHHHHHHHcCCHHHHHHHHHhhhh
Q 041785           83 ---------------------------------------LEICPALLLQVNAK-GDTPLHLAAKYSHFDIVRVLIERAQL  122 (181)
Q Consensus        83 ---------------------------------------~~~~~~~~~~~~~~-g~t~L~~a~~~~~~~~~~~L~~~~~~  122 (181)
                                                             +...|++++.++.. |.||||+|+..|+.+++++|++.|++
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad  193 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN  193 (477)
T ss_pred             HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence                                                   22236777778877 99999999999999999999999998


Q ss_pred             ccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHc-CCHHHHHHHHHcCCCCCCCcC
Q 041785          123 AQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSH-GNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       123 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +...+..+..+....               +.+++.+|..|+||||+|+.. ++.+++++|+++|++++..++
T Consensus       194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence            855444444433222               234567777888888888865 577888888888888876653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=5.8e-24  Score=165.66  Aligned_cols=129  Identities=19%  Similarity=0.192  Sum_probs=118.4

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHH
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLA  104 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a  104 (181)
                      |.||||+|+..|+.++++.|++.|++++..+..|.||||+|  +..++.++++.|++.    |++++.++..|.||||+|
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A--~~~~~~~iv~~Ll~~----ga~in~~d~~g~TpLh~A  241 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA--VKHYNKPIVHILLEN----GASTDARDKCGNTPLHIS  241 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHhCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHH
Confidence            89999999999999999999999999998999999999999  999999999999997    999999999999999999


Q ss_pred             HHc-CCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccC-CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          105 AKY-SHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNN-EKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       105 ~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +.. ++.+++++|++.|+++                  +.++. .|.||||+|  .++.+++++|+++|++++..++
T Consensus       242 ~~~~~~~~iv~~Ll~~gadv------------------n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~  298 (477)
T PHA02878        242 VGYCKDYDILKLLLEHGVDV------------------NAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS  298 (477)
T ss_pred             HHhcCCHHHHHHHHHcCCCC------------------CccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC
Confidence            975 6899999999999998                  66664 789999999  5678899999999999887754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=2.6e-24  Score=167.80  Aligned_cols=140  Identities=24%  Similarity=0.255  Sum_probs=125.8

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      ..+.+|.||||+|++.|..+++..|+..|++.+.++.++.+|||.|  +++|+.++++.|++  +......+..|..|.|
T Consensus       268 ~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~A--A~yg~~ntv~rLL~--~~~~rllne~D~~g~t  343 (929)
T KOG0510|consen  268 DEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFA--AIYGRINTVERLLQ--ESDTRLLNESDLHGMT  343 (929)
T ss_pred             cccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHH--HHcccHHHHHHHHh--CcCccccccccccCCC
Confidence            4567899999999999999999999999999999999999999999  99999999999998  2245688889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      |||+|++.|+.++++.|+..|+....               ....|..|.||||.|+..|+..+|++|+++|+++...+
T Consensus       344 pLHlaa~~gH~~v~qlLl~~GA~~~~---------------~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n  407 (929)
T KOG0510|consen  344 PLHLAAKSGHDRVVQLLLNKGALFLN---------------MSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKN  407 (929)
T ss_pred             chhhhhhcCHHHHHHHHHhcChhhhc---------------ccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecc
Confidence            99999999999999999999998711               01349999999999999999999999999999996644

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=1.5e-23  Score=142.20  Aligned_cols=131  Identities=20%  Similarity=0.221  Sum_probs=113.4

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHH------HhcccccccCCCCchhHHHHhhhhhhh----hHHHHHHHHHhhcccc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAR------EVIESSLTVHTKNTILHINIICQETEN----ASTKFVEEILEICPAL   89 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~------~~~~~~~~~~~g~t~Lh~a~~~~~~~~----~~~~~l~~~~~~~~~~   89 (181)
                      .....|.|+||+|+..|+.++++.|+.      .+.+.+.+|..|.||||+|  +..++.    +++++|+..    +++
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A--~~~g~~~~~~~ii~~Ll~~----gad   89 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIA--AEKHEAQLAAEIIDHLIEL----GAD   89 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHH--HHcCChHHHHHHHHHHHHc----CCC
Confidence            345678999999999999999999864      2466677899999999999  988884    566666664    999


Q ss_pred             cccccc-CCCcHHHHHHHcCCHHHHHHHHH-hhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHH
Q 041785           90 LLQVNA-KGDTPLHLAAKYSHFDIVRVLIE-RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL  167 (181)
Q Consensus        90 ~~~~~~-~g~t~L~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  167 (181)
                      ++.++. .|+||||+|+..++.+++++|++ .++++                  +.+|..|+|||++|+..++.+++++|
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~------------------~~~n~~g~tpL~~A~~~~~~~iv~~L  151 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL------------------HFCNADNKSPFELAIDNEDVAMMQIL  151 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------------------CcCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            999985 89999999999999999999998 47777                  88899999999999999999999999


Q ss_pred             HHcCCCC
Q 041785          168 TREDPDY  174 (181)
Q Consensus       168 l~~g~~~  174 (181)
                      ++.++..
T Consensus       152 ~~~~~~~  158 (169)
T PHA02741        152 REIVATS  158 (169)
T ss_pred             HHHHHHh
Confidence            9876553

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.6e-23  Score=161.49  Aligned_cols=155  Identities=15%  Similarity=0.127  Sum_probs=121.2

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH-------------------
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI-------------------   82 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~-------------------   82 (181)
                      ...+.||||.|++.|+.+++++|++.|++++..+..|.+|||.|  +..++.+++++|++.                   
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A--~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~  109 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTA--IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT  109 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence            44678999999999999999999999999888888899999999  999999999888764                   


Q ss_pred             HhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCC
Q 041785           83 LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNE  147 (181)
Q Consensus        83 ~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~  147 (181)
                      +...|.+++.++..|.||||+|+..|+.+++++|++.|+++...+..+..+....               +.+++.++..
T Consensus       110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~  189 (434)
T PHA02874        110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN  189 (434)
T ss_pred             HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC
Confidence            1223556777888899999999999999999999999988754444443332221               1234566777


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          148 KNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       148 g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      |.||||+|+..|+.+++++|++.|++++..+
T Consensus       190 g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~  220 (434)
T PHA02874        190 GESPLHNAAEYGDYACIKLLIDHGNHIMNKC  220 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCcCCC
Confidence            8888888888888888888888887776554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=163.28  Aligned_cols=154  Identities=19%  Similarity=0.188  Sum_probs=131.9

Q ss_pred             hcccCCCHHHHHHH--HcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhh--hhhHHHHHHHHHhhcccccccccc
Q 041785           20 IKQSQMDPNLFKAA--ADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQET--ENASTKFVEEILEICPALLLQVNA   95 (181)
Q Consensus        20 ~~~~~~~t~l~~a~--~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~   95 (181)
                      .....|.||||+|+  ..|+.++++.|++.|++.+..+..|.||||+|  +..+  +.+++++|++.    |++++.++.
T Consensus       101 ~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~~iv~~Ll~~----g~din~~d~  174 (480)
T PHA03100        101 APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY--LESNKIDLKILKLLIDK----GVDINAKNR  174 (480)
T ss_pred             CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHH--HHcCCChHHHHHHHHHC----CCCcccccC
Confidence            34557899999999  99999999999999999988899999999999  9998  99999999997    899999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcc------h-----------HHHH------HHHhhcccCCCchHH
Q 041785           96 KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPES------G-----------IEAF------RQMIRMVNNEKNTAL  152 (181)
Q Consensus        96 ~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~------~-----------~~~~------~~~~~~~~~~g~t~l  152 (181)
                      .|.||||+|+..|+.+++++|++.|+++.........      .           ....      +.+++.+|..|.|||
T Consensus       175 ~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL  254 (480)
T PHA03100        175 YGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPL  254 (480)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            9999999999999999999999999887554443311      1           0111      245677899999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          153 HEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       153 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |+|+..|+.+++++|+++|++++..+.
T Consensus       255 ~~A~~~~~~~iv~~Ll~~gad~n~~d~  281 (480)
T PHA03100        255 HYAVYNNNPEFVKYLLDLGANPNLVNK  281 (480)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence            999999999999999999999988764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=2e-23  Score=171.42  Aligned_cols=152  Identities=18%  Similarity=0.239  Sum_probs=126.7

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...+.++|+.|+..|+.+.++.|++.|++++..|..|.||||+|  +..|+.++++.|++.    |++++.+|..|+|||
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~A--a~~g~~~~v~~Ll~~----gadin~~d~~G~TpL  595 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIA--ASKGYEDCVLVLLKH----ACNVHIRDANGNTAL  595 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcChHHHHHHHHhc----CCCCCCcCCCCCCHH
Confidence            44567899999999999999999999999999999999999999  999999999999987    999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCC-------------cchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHH
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEP-------------ESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT  168 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  168 (181)
                      |+|+..|+.+++++|++.++.........             .......+.+++.+|..|+||||+|+..|+.+++++|+
T Consensus       596 ~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        596 WNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            99999999999999987765432111000             00011113457889999999999999999999999999


Q ss_pred             HcCCCCCCCcC
Q 041785          169 REDPDYPYSAN  179 (181)
Q Consensus       169 ~~g~~~~~~~~  179 (181)
                      ++|++++..++
T Consensus       676 ~~GAdv~~~~~  686 (823)
T PLN03192        676 MNGADVDKANT  686 (823)
T ss_pred             HcCCCCCCCCC
Confidence            99999988764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.90  E-value=2.1e-23  Score=139.46  Aligned_cols=132  Identities=15%  Similarity=0.174  Sum_probs=107.0

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcc-----cccccCCCCchhHHHHhhhhhhhh---HHHHHHHHHhhcccccc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIE-----SSLTVHTKNTILHINIICQETENA---STKFVEEILEICPALLL   91 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~-----~~~~~~~g~t~Lh~a~~~~~~~~~---~~~~l~~~~~~~~~~~~   91 (181)
                      .....|.||||+|+..|+...+..+.....+     ...++..|.||||+|  +..++.+   +++.|+..    |++++
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a--~~~~~~~~~e~v~~Ll~~----gadin   85 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIV--SNPDKADPQEKLKLLMEW----GADIN   85 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEee--cccCchhHHHHHHHHHHc----CCCcc
Confidence            3455799999999999984322222211111     123588999999999  8888764   56677775    89999


Q ss_pred             ccc-cCCCcHHHHHHHcCCHHHHHHHHHh-hhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHH
Q 041785           92 QVN-AKGDTPLHLAAKYSHFDIVRVLIER-AQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR  169 (181)
Q Consensus        92 ~~~-~~g~t~L~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  169 (181)
                      .++ ..|+||||+|+..++.+++++|+.. +.++                  +.++..|.||||+|+..|+.+++++|+.
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~------------------n~~~~~g~tpL~~A~~~~~~~i~~~Ll~  147 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM------------------EILNYAFKTPYYVACERHDAKMMNILRA  147 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC------------------ccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            998 5899999999999999999999984 7777                  8899999999999999999999999999


Q ss_pred             cCCCCC
Q 041785          170 EDPDYP  175 (181)
Q Consensus       170 ~g~~~~  175 (181)
                      +|++++
T Consensus       148 ~ga~~~  153 (154)
T PHA02736        148 KGAQCK  153 (154)
T ss_pred             cCCCCC
Confidence            999875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=5.5e-23  Score=164.30  Aligned_cols=75  Identities=24%  Similarity=0.185  Sum_probs=52.2

Q ss_pred             cccccccccCCCcHHHHHHH--cCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHH-------
Q 041785           87 PALLLQVNAKGDTPLHLAAK--YSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVS-------  157 (181)
Q Consensus        87 ~~~~~~~~~~g~t~L~~a~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~-------  157 (181)
                      |++++.+|..|+||||+|+.  .++.+++++|++.|+++                  +.+|..|+||||+|+.       
T Consensus       307 GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI------------------N~kD~~G~TPLH~A~~~lav~~~  368 (764)
T PHA02716        307 GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL------------------NEPDNIGNTVLHTYLSMLSVVNI  368 (764)
T ss_pred             CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC------------------ccCCCCCCCHHHHHHHhhhhhcc
Confidence            45555555555555554432  23445555555555544                  8899999999999875       


Q ss_pred             -------cCCHHHHHHHHHcCCCCCCCcC
Q 041785          158 -------HGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       158 -------~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                             .++.+++++|+++|++++..++
T Consensus       369 ld~~~~~~~~~eVVklLL~~GADIn~kn~  397 (764)
T PHA02716        369 LDPETDNDIRLDVIQCLISLGADITAVNC  397 (764)
T ss_pred             ccccccccChHHHHHHHHHCCCCCCCcCC
Confidence                   3688999999999999988765

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=9.7e-23  Score=159.37  Aligned_cols=153  Identities=13%  Similarity=0.141  Sum_probs=119.9

Q ss_pred             cccCCCHHHHHHHHc---CCcHHHHHHHHHhccc-ccccCCCCchhHHHHhhh--hhhhhHHHHHHHHHhhccccccc-c
Q 041785           21 KQSQMDPNLFKAAAD---GSVEPFKDMAREVIES-SLTVHTKNTILHINIICQ--ETENASTKFVEEILEICPALLLQ-V   93 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~-~~~~~~g~t~Lh~a~~~~--~~~~~~~~~l~~~~~~~~~~~~~-~   93 (181)
                      ....|.||||.|+..   |+.++++.|++.|+++ +.++..|.||||+|  +.  .++.+++++|++.    |++++. .
T Consensus       104 ~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a--~~~~~~~~~iv~~Ll~~----Gadi~~~~  177 (494)
T PHA02989        104 KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMY--LESFSVKKDVIKILLSF----GVNLFEKT  177 (494)
T ss_pred             CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHH--HHhccCCHHHHHHHHHc----CCCccccc
Confidence            344678999887755   5788999999999888 67888899999988  54  4577888888886    888877 5


Q ss_pred             ccCCCcHHHHHHHcC----CHHHHHHHHHhhhhccCCCCCCcchHHH--------------------HHHHhhcccCCCc
Q 041785           94 NAKGDTPLHLAAKYS----HFDIVRVLIERAQLAQHGDEEPESGIEA--------------------FRQMIRMVNNEKN  149 (181)
Q Consensus        94 ~~~g~t~L~~a~~~~----~~~~~~~L~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~  149 (181)
                      +..|.||||+|+..+    +.+++++|++.|+++...+.........                    .+.+++.+|..|+
T Consensus       178 ~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~  257 (494)
T PHA02989        178 SLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGF  257 (494)
T ss_pred             cccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCC
Confidence            678899999887654    7889999999988875544333222211                    0134678899999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          150 TALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       150 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      ||||+|+..|+.+++++|+++|++++..+.
T Consensus       258 TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~  287 (494)
T PHA02989        258 NPLLISAKVDNYEAFNYLLKLGDDIYNVSK  287 (494)
T ss_pred             CHHHHHHHhcCHHHHHHHHHcCCCccccCC
Confidence            999999999999999999999999988764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.3e-22  Score=156.53  Aligned_cols=150  Identities=17%  Similarity=0.104  Sum_probs=85.4

Q ss_pred             CCCHHHHHHHHcC-CcHHHHHHHHHhcccccccCCCCchhHHHHhh--hhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           24 QMDPNLFKAAADG-SVEPFKDMAREVIESSLTVHTKNTILHINIIC--QETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        24 ~~~t~l~~a~~~g-~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      .|.||||+|+..| ..++++.|++.|++++.++..|.||||+|  +  ..++.+++++|++.    |++++.++..|.||
T Consensus        82 ~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a--~~~~~~~~~iv~~Ll~~----gad~~~~d~~g~tp  155 (471)
T PHA03095         82 CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY--LSGFNINPKVIRLLLRK----GADVNALDLYGMTP  155 (471)
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH--hhCCcCCHHHHHHHHHc----CCCCCccCCCCCCH
Confidence            4555555555555 35555555555555555555555555555  4  23344555555554    45555555555555


Q ss_pred             HHHHHHcC--CHHHHHHHHHhhhhccCCCCCCcchHHH------------------------------------------
Q 041785          101 LHLAAKYS--HFDIVRVLIERAQLAQHGDEEPESGIEA------------------------------------------  136 (181)
Q Consensus       101 L~~a~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~~~~------------------------------------------  136 (181)
                      ||+|+..+  ..+++++|++.|+++...+..+......                                          
T Consensus       156 L~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~  235 (471)
T PHA03095        156 LAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSC  235 (471)
T ss_pred             HHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCc
Confidence            55544433  3445555555544432221111111100                                          


Q ss_pred             ----------HHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          137 ----------FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       137 ----------~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                                .+.+++.+|..|+||||+|+..|+.+++++|+++|++++..++
T Consensus       236 ~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~  288 (471)
T PHA03095        236 KRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSS  288 (471)
T ss_pred             hHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence                      0124567888999999999999999999999999999988765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.89  E-value=9.6e-23  Score=159.00  Aligned_cols=153  Identities=21%  Similarity=0.216  Sum_probs=113.6

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHH-----HHhhhhhhhhHHHHHHHHHhhcccccccccc
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHI-----NIICQETENASTKFVEEILEICPALLLQVNA   95 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~-----a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   95 (181)
                      ....+.||||.|+..|+.++++.|++.|++++..+..|.+|||+     |  +..++.+++++|++.    |++++..+.
T Consensus        31 ~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a--~~~~~~~iv~~Ll~~----ga~i~~~d~  104 (480)
T PHA03100         31 SYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY--NLTDVKEIVKLLLEY----GANVNAPDN  104 (480)
T ss_pred             hhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHH--HhhchHHHHHHHHHC----CCCCCCCCC
Confidence            34456788888888888888888888887777777777888888     7  777788888887776    777777777


Q ss_pred             CCCcHHHHHH--HcCCHHHHHHHHHhhhhccCCCCCCcchHHHH-----------------HHHhhcccCCCchHHHHHH
Q 041785           96 KGDTPLHLAA--KYSHFDIVRVLIERAQLAQHGDEEPESGIEAF-----------------RQMIRMVNNEKNTALHEAV  156 (181)
Q Consensus        96 ~g~t~L~~a~--~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~t~l~~A~  156 (181)
                      .|.||||+|+  ..++.+++++|++.|+++...+..+.......                 +.+++.++..|.||||+|+
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            7888888888  77788888888887777644333332221111                 2334677888999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCcC
Q 041785          157 SHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       157 ~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      ..|+.+++++|+++|++++..+.
T Consensus       185 ~~~~~~iv~~Ll~~ga~~~~~~~  207 (480)
T PHA03100        185 EKGNIDVIKFLLDNGADINAGDI  207 (480)
T ss_pred             HhCCHHHHHHHHHcCCCccCCCC
Confidence            99999999999999999876643

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=1.1e-22  Score=156.74  Aligned_cols=151  Identities=15%  Similarity=0.094  Sum_probs=114.0

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhh--hhhHHHHHHHHHhhccccccc-cccCC
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQET--ENASTKFVEEILEICPALLLQ-VNAKG   97 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~--~~~~~~~l~~~~~~~~~~~~~-~~~~g   97 (181)
                      ....|.||||+|+..|+.++++.|++.|++++.+|..|.||||+|  +..+  ..+++++|++.    |++++. .+..|
T Consensus        68 ~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A--~~~~~~~~e~v~lLl~~----Gadin~~~d~~g  141 (446)
T PHA02946         68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYL--SGTDDEVIERINLLVQY----GAKINNSVDEEG  141 (446)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH--HHcCCchHHHHHHHHHc----CCCcccccCCCC
Confidence            455688999999999999999999988888888888899999988  6544  46778888776    787774 57788


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHH-----------------HHHHhhcccCCCchHHHHHHHcC-
Q 041785           98 DTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA-----------------FRQMIRMVNNEKNTALHEAVSHG-  159 (181)
Q Consensus        98 ~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~g~t~l~~A~~~~-  159 (181)
                      .|||| |+..++.+++++|++.|+++...+..+..+...                 .+.+++.+|..|+||||+|+..+ 
T Consensus       142 ~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        142 CGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             CcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence            88886 566678888888888887775544444333221                 12355677888999999999875 


Q ss_pred             -CHHHHHHHHHcCCCCCCCcC
Q 041785          160 -NVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       160 -~~~~~~~Ll~~g~~~~~~~~  179 (181)
                       +.+++++|++ |++++..++
T Consensus       221 ~~~~iv~lLl~-gadin~~d~  240 (446)
T PHA02946        221 KNVDIINLLLP-STDVNKQNK  240 (446)
T ss_pred             CcHHHHHHHHc-CCCCCCCCC
Confidence             7788888884 888887764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=140.74  Aligned_cols=131  Identities=15%  Similarity=0.126  Sum_probs=114.1

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhh--hhhhHHHHHHHHHhhccccccccc-cCCC
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQE--TENASTKFVEEILEICPALLLQVN-AKGD   98 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~-~~g~   98 (181)
                      .....+|||.|+..|+.+.++.|+.. .  +..+..|.||||+|  +..  ++.+++++|++.    |++++.++ ..|.
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~-~--n~~~~~g~TpLh~a--~~~~~~~~eiv~~Ll~~----gadvn~~~~~~g~   88 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF-V--NDCNDLYETPIFSC--LEKDKVNVEILKFLIEN----GADVNFKTRDNNL   88 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh-h--hccCccCCCHHHHH--HHcCCCCHHHHHHHHHC----CCCCCccCCCCCC
Confidence            34568999999999999999999974 2  34688999999999  764  488999999997    99999997 5899


Q ss_pred             cHHHHHHHc---CCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHH--cCCHHHHHHHHHcCCC
Q 041785           99 TPLHLAAKY---SHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVS--HGNVEVVKILTREDPD  173 (181)
Q Consensus        99 t~L~~a~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~--~~~~~~~~~Ll~~g~~  173 (181)
                      ||||+|+..   ++.+++++|++.|+++                  +.+|..|.||||+|+.  .++.+++++|+++|++
T Consensus        89 TpLh~a~~~~~~~~~eiv~~Ll~~gadi------------------n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad  150 (209)
T PHA02859         89 SALHHYLSFNKNVEPEILKILIDSGSSI------------------TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS  150 (209)
T ss_pred             CHHHHHHHhCccccHHHHHHHHHCCCCC------------------CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            999998764   4789999999999998                  8999999999999986  4689999999999999


Q ss_pred             CCCCcC
Q 041785          174 YPYSAN  179 (181)
Q Consensus       174 ~~~~~~  179 (181)
                      ++..+.
T Consensus       151 in~~d~  156 (209)
T PHA02859        151 FLNKDF  156 (209)
T ss_pred             cccccC
Confidence            987654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.5e-22  Score=158.11  Aligned_cols=151  Identities=15%  Similarity=0.096  Sum_probs=101.7

Q ss_pred             cCCCHHHHHHHHc-----CCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhh---hhhHHHHHHHHHhhccccccccc
Q 041785           23 SQMDPNLFKAAAD-----GSVEPFKDMAREVIESSLTVHTKNTILHINIICQET---ENASTKFVEEILEICPALLLQVN   94 (181)
Q Consensus        23 ~~~~t~l~~a~~~-----g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~   94 (181)
                      ..|.||||.++..     +..++++.|++.|++++.++..|.||||+|  +..+   +.+++++|++.    |++++.++
T Consensus        69 ~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a--~~~~~~~~~~iv~~Ll~~----Gadvn~~d  142 (489)
T PHA02798         69 NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCL--LSNGYINNLEILLFMIEN----GADTTLLD  142 (489)
T ss_pred             CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHH--HHcCCcChHHHHHHHHHc----CCCccccC
Confidence            4566777766643     556677777777777666666777777776  5543   55666666665    66777777


Q ss_pred             cCCCcHHHHHHHcCC---HHHHHHHHHhhhhccCCC--------------------------------------CCCcch
Q 041785           95 AKGDTPLHLAAKYSH---FDIVRVLIERAQLAQHGD--------------------------------------EEPESG  133 (181)
Q Consensus        95 ~~g~t~L~~a~~~~~---~~~~~~L~~~~~~~~~~~--------------------------------------~~~~~~  133 (181)
                      ..|.||||+|+..++   .+++++|++.|+++...+                                      ......
T Consensus       143 ~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~  222 (489)
T PHA02798        143 KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKK  222 (489)
T ss_pred             CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccch
Confidence            777777777776665   666777777666542211                                      111111


Q ss_pred             HH-H--------------------HHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          134 IE-A--------------------FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       134 ~~-~--------------------~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      .. .                    ...+++.+|..|+||||+|+..++.+++++|+++|++++..++
T Consensus       223 ~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~  289 (489)
T PHA02798        223 FMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITE  289 (489)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCC
Confidence            00 0                    0124677889999999999999999999999999999998765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.9e-22  Score=163.15  Aligned_cols=151  Identities=16%  Similarity=0.146  Sum_probs=115.2

Q ss_pred             cCCCHHHHHHHHcC-CcHHHHHHHHHhcccccccCCCCchhHHHHhhhh-hhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           23 SQMDPNLFKAAADG-SVEPFKDMAREVIESSLTVHTKNTILHINIICQE-TENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        23 ~~~~t~l~~a~~~g-~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ..|.||||+|+..| ..+.++.|+..|++++..+..|.||||+|  +.. +..+++..|++.    |++++.++..|.||
T Consensus       305 ~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A--~~~~~~~~iv~lLl~~----gadin~~d~~G~Tp  378 (682)
T PHA02876        305 IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA--STLDRNKDIVITLLEL----GANVNARDYCDKTP  378 (682)
T ss_pred             CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH--HHhCCcHHHHHHHHHc----CCCCccCCCCCCCH
Confidence            45667777777766 46666777777766666667777777777  553 345666666665    89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH----------------HHHhhcccCCCchHHHHHHHcC-CHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF----------------RQMIRMVNNEKNTALHEAVSHG-NVEV  163 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~t~l~~A~~~~-~~~~  163 (181)
                      ||+|+..++.+++++|++.|+++......+.......                +.+++.+|..|+||||+|+..+ +.++
T Consensus       379 Lh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~i  458 (682)
T PHA02876        379 IHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDV  458 (682)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHH
Confidence            9999999999999999999988865444433322211                2456789999999999999976 6899


Q ss_pred             HHHHHHcCCCCCCCcC
Q 041785          164 VKILTREDPDYPYSAN  179 (181)
Q Consensus       164 ~~~Ll~~g~~~~~~~~  179 (181)
                      +++|++.|++++..+.
T Consensus       459 v~lLl~~Gad~n~~d~  474 (682)
T PHA02876        459 IEMLLDNGADVNAINI  474 (682)
T ss_pred             HHHHHHCCCCCCCCCC
Confidence            9999999999988764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=3e-22  Score=160.12  Aligned_cols=152  Identities=13%  Similarity=0.067  Sum_probs=112.5

Q ss_pred             ccCCCHHHHHHHHc--CCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhh--hhHHHHHHHHHhhccccccccccCC
Q 041785           22 QSQMDPNLFKAAAD--GSVEPFKDMAREVIESSLTVHTKNTILHINIICQETE--NASTKFVEEILEICPALLLQVNAKG   97 (181)
Q Consensus        22 ~~~~~t~l~~a~~~--g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~g   97 (181)
                      ...|.||||.|+..  ++.+++++|++.|++++.++..|.||||+|  +..++  .++++.|++.    |++++.++..|
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~A--a~~g~~~~eIVklLLe~----GADVN~kD~~G  247 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTY--LITGNVCASVIKKIIEL----GGDMDMKCVNG  247 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCCCHHHHHHHHHc----CCCCCCCCCCC
Confidence            45789999988754  578999999999999999999999999999  88885  4899999987    99999999999


Q ss_pred             CcHHHHHH---HcCCHHHHHHHHHhhhhccCCCCCC----------------cchHHHHHHHhhcccCCCchHHHHHHH-
Q 041785           98 DTPLHLAA---KYSHFDIVRVLIERAQLAQHGDEEP----------------ESGIEAFRQMIRMVNNEKNTALHEAVS-  157 (181)
Q Consensus        98 ~t~L~~a~---~~~~~~~~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~t~l~~A~~-  157 (181)
                      +||||+|+   ..++.++++.+++.+..........                .......+.+++.+|..|+||||+|+. 
T Consensus       248 ~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~  327 (764)
T PHA02716        248 MSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILR  327 (764)
T ss_pred             CCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHH
Confidence            99999764   3345555555544321110000000                000000112348899999999999875 


Q ss_pred             -cCCHHHHHHHHHcCCCCCCCcC
Q 041785          158 -HGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       158 -~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                       .++.+++++|+++|++++.+++
T Consensus       328 ~~~~~eIVklLLe~GADIN~kD~  350 (764)
T PHA02716        328 HNISTDIIKLLHEYGNDLNEPDN  350 (764)
T ss_pred             hCCCchHHHHHHHcCCCCccCCC
Confidence             4678999999999999988765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=151.70  Aligned_cols=130  Identities=19%  Similarity=0.093  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcccc-cc-----cCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCC
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESS-LT-----VHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGD   98 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~-~~-----~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (181)
                      +.||+|.|+..|+.+++++|++.|++.. ..     +..+.+++|.|  +..++.+++++|+..    |++++.++..|.
T Consensus       149 ~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a--~~~~~~eIve~LIs~----GADIN~kD~~G~  222 (437)
T PHA02795        149 CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLV--DEPTVLEIYKLCIPY----IEDINQLDAGGR  222 (437)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHH--HhcCHHHHHHHHHhC----cCCcCcCCCCCC
Confidence            3456666666666666666666554321 11     12355566666  566666677777665    888999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCC--------HHHHHHHHHc
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN--------VEVVKILTRE  170 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~--------~~~~~~Ll~~  170 (181)
                      ||||+|+..|+.+++++|++.|+++                  +.+|..|+||||+|+..|+        .+++++|+++
T Consensus       223 TpLh~Aa~~g~~eiVelLL~~GAdI------------------N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~  284 (437)
T PHA02795        223 TLLYRAIYAGYIDLVSWLLENGANV------------------NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLRE  284 (437)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCC------------------CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhC
Confidence            9999999999999999999999998                  8999999999999999984        6999999999


Q ss_pred             CCCCCCCc
Q 041785          171 DPDYPYSA  178 (181)
Q Consensus       171 g~~~~~~~  178 (181)
                      |++++...
T Consensus       285 gadI~~~~  292 (437)
T PHA02795        285 PLSIDCIK  292 (437)
T ss_pred             CCCCCchh
Confidence            99987653

>PHA03095 ankyrin-like protein; Provisional

Probab=99.88  E-value=4e-22  Score=155.17  Aligned_cols=152  Identities=14%  Similarity=0.091  Sum_probs=115.2

Q ss_pred             cccCCCHHHHHHHHcC---CcHHHHHHHHHhcccccccCCCCchhHHHHhhhhh-hhhHHHHHHHHHhhccccccccccC
Q 041785           21 KQSQMDPNLFKAAADG---SVEPFKDMAREVIESSLTVHTKNTILHINIICQET-ENASTKFVEEILEICPALLLQVNAK   96 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~   96 (181)
                      ....|.||||+|+..|   +.++++.|++.|++++.++..|.||||+|  +..+ ..+++++|++.    |++++.++..
T Consensus        43 ~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A--~~~~~~~~iv~lLl~~----ga~in~~~~~  116 (471)
T PHA03095         43 RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLY--LYNATTLDVIKLLIKA----GADVNAKDKV  116 (471)
T ss_pred             CCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCcHHHHHHHHHc----CCCCCCCCCC
Confidence            3456899999999999   99999999999999998899999999999  9999 59999999997    9999999999


Q ss_pred             CCcHHHHHH--HcCCHHHHHHHHHhhhhccCCCCCCcchHHHH-----------------HHHhhcccCCCchHHHHHHH
Q 041785           97 GDTPLHLAA--KYSHFDIVRVLIERAQLAQHGDEEPESGIEAF-----------------RQMIRMVNNEKNTALHEAVS  157 (181)
Q Consensus        97 g~t~L~~a~--~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~g~t~l~~A~~  157 (181)
                      |.||||+|+  ..++.+++++|++.|+++...+..+..+....                 +..++..+..|+||||+|+.
T Consensus       117 g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~  196 (471)
T PHA03095        117 GRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ  196 (471)
T ss_pred             CCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            999999999  55678999999999998844333333222110                 11223335556666666554


Q ss_pred             c--CCHHHHHHHHHcCCCCCCCc
Q 041785          158 H--GNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       158 ~--~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      .  +..++++.|+++|++++..+
T Consensus       197 ~~~~~~~i~~~Ll~~g~~~~~~d  219 (471)
T PHA03095        197 SFKPRARIVRELIRAGCDPAATD  219 (471)
T ss_pred             HCCCcHHHHHHHHHcCCCCcccC
Confidence            3  45566666666666665544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=142.48  Aligned_cols=125  Identities=10%  Similarity=0.058  Sum_probs=109.8

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccc----cCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccc-
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLT----VHTKNTILHINIICQETENASTKFVEEILEICPALLLQVN-   94 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~----~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-   94 (181)
                      .+..+..++||.|+..|+.++++.|++.|++++.+    +..|.||||+|  +..++.+++++|+..    |++++.++ 
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~A--a~~~~~eivklLL~~----GADVN~~~~  101 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYA--IDCDNDDAAKLLIRY----GADVNRYAE  101 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCcCcccC
Confidence            34556678889999999999999999999999875    45899999999  999999999999997    99999864 


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHH
Q 041785           95 AKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT  168 (181)
Q Consensus        95 ~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  168 (181)
                      ..|.||||+|+..++.+++++|++.|+++                  +.+|..|.||+|+|+..++.+++.++.
T Consensus       102 ~~g~TpLh~Aa~~~~~eivklLL~~GAdi------------------n~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        102 EAKITPLYISVLHGCLKCLEILLSYGADI------------------NIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            57999999999999999999999999998                  889999999999999877655554443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=2.6e-22  Score=148.79  Aligned_cols=129  Identities=27%  Similarity=0.331  Sum_probs=99.7

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      .+|-+||-.|+..|++++|+.|+..|++.+.......|||-.|  |.-|+.+++++|+++    ++++++.|.+|.|-||
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraA--CfDG~leivKyLvE~----gad~~IanrhGhTcLm  155 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAA--CFDGHLEIVKYLVEH----GADPEIANRHGHTCLM  155 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHH--HhcchhHHHHHHHHc----CCCCcccccCCCeeEE
Confidence            3566777777777888888888887777776666677788877  777788888887776    7777888888888888


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP  175 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  175 (181)
                      +||.+|+.+++++|++.|+++                  +.++..|+|+||.+++.|+.+++++|+++|+.+.
T Consensus       156 Ia~ykGh~~I~qyLle~gADv------------------n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~  210 (615)
T KOG0508|consen  156 IACYKGHVDIAQYLLEQGADV------------------NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID  210 (615)
T ss_pred             eeeccCchHHHHHHHHhCCCc------------------chhcccCchHHHhhhhcccHHHHHHHHhCCceee
Confidence            888888888888888888777                  7777778888888888888888888887777653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.86  E-value=3.6e-21  Score=150.39  Aligned_cols=133  Identities=17%  Similarity=0.119  Sum_probs=116.9

Q ss_pred             cCCCHHHHHHHHc--CCcHHHHHHHHHhcccccccCCCCchhHHHHhhhh-----hhhhHHHHHHHHHhhcccccccccc
Q 041785           23 SQMDPNLFKAAAD--GSVEPFKDMAREVIESSLTVHTKNTILHINIICQE-----TENASTKFVEEILEICPALLLQVNA   95 (181)
Q Consensus        23 ~~~~t~l~~a~~~--g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~   95 (181)
                      ..+.|+++.....  ++.++++.|++.|++++.++..|.||||.|  +..     +..+++++|++.    |++++.++.
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~--~~n~~~~~~~~~iv~~Ll~~----GadiN~~d~  107 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTI--LSNIKDYKHMLDIVKILIEN----GADINKKNS  107 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHH--HHhHHhHHhHHHHHHHHHHC----CCCCCCCCC
Confidence            4466777655544  478999999999999999999999999998  653     568899999987    999999999


Q ss_pred             CCCcHHHHHHHcC---CHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCC---HHHHHHHHH
Q 041785           96 KGDTPLHLAAKYS---HFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN---VEVVKILTR  169 (181)
Q Consensus        96 ~g~t~L~~a~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~---~~~~~~Ll~  169 (181)
                      .|.||||+|+..+   +.+++++|++.|+++                  +.+|..|.||||+|+..++   .+++++|++
T Consensus       108 ~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv------------------n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798        108 DGETPLYCLLSNGYINNLEILLFMIENGADT------------------TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             CcCcHHHHHHHcCCcChHHHHHHHHHcCCCc------------------cccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            9999999999876   689999999999998                  8999999999999999987   999999999


Q ss_pred             cCCCCCCCcC
Q 041785          170 EDPDYPYSAN  179 (181)
Q Consensus       170 ~g~~~~~~~~  179 (181)
                      +|++++..++
T Consensus       170 ~gadin~~~~  179 (489)
T PHA02798        170 KGVDINTHNN  179 (489)
T ss_pred             hCCCcccccC
Confidence            9999987654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.86  E-value=5e-21  Score=154.96  Aligned_cols=134  Identities=17%  Similarity=0.137  Sum_probs=111.6

Q ss_pred             ccCCCHHHHHHHHcCCc-HHHHHHHHHhcccccccCCCCchhHHHHhhhhh-hhhHHHHHHHHHhhccccccccccCCCc
Q 041785           22 QSQMDPNLFKAAADGSV-EPFKDMAREVIESSLTVHTKNTILHINIICQET-ENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~-~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      ...|.||||+|+..|+. ++++.|++.|++++.++..|.||||+|  +..| ..+.++.|+..    |++++.++..|.|
T Consensus       270 d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~A--a~~g~~~~~v~~Ll~~----gadin~~d~~g~T  343 (682)
T PHA02876        270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLM--AKNGYDTENIRTLIML----GADVNAADRLYIT  343 (682)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHhCCCHHHHHHHHHc----CCCCCCcccCCCc
Confidence            34688999999998886 477888888888888888999999999  8877 57888888876    8888999999999


Q ss_pred             HHHHHHHcC-CHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          100 PLHLAAKYS-HFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       100 ~L~~a~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      |||+|+..+ ..++++.|++.|+++                  +.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       344 pLh~A~~~~~~~~iv~lLl~~gadi------------------n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~  405 (682)
T PHA02876        344 PLHQASTLDRNKDIVITLLELGANV------------------NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS  405 (682)
T ss_pred             HHHHHHHhCCcHHHHHHHHHcCCCC------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccC
Confidence            999998754 678888899988887                  7788888888888888888888888888888877654


Q ss_pred             C
Q 041785          179 N  179 (181)
Q Consensus       179 ~  179 (181)
                      +
T Consensus       406 ~  406 (682)
T PHA02876        406 Q  406 (682)
T ss_pred             C
Confidence            3

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=6.4e-22  Score=142.43  Aligned_cols=147  Identities=18%  Similarity=0.219  Sum_probs=120.4

Q ss_pred             cCCCCCCchhhcccCCCHHHHHHHHcCCcHHHHHHHHHh-cccccccCCCCchhHHHHhhhhhh---hhHHHHHHHHHhh
Q 041785           10 EAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREV-IESSLTVHTKNTILHINIICQETE---NASTKFVEEILEI   85 (181)
Q Consensus        10 ~~~~~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~g~t~Lh~a~~~~~~~---~~~~~~l~~~~~~   85 (181)
                      ..++++..-+..+.+|.|+|||++.++++.+|+.||+.| .+.+.++..|.||+++++++....   ..+|..|...   
T Consensus       253 s~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---  329 (452)
T KOG0514|consen  253 SPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM---  329 (452)
T ss_pred             ChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc---
Confidence            344555556677889999999999999999999999966 444568899999999985444333   3455555443   


Q ss_pred             ccccccccc-cCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHH
Q 041785           86 CPALLLQVN-AKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVV  164 (181)
Q Consensus        86 ~~~~~~~~~-~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  164 (181)
                        .++|.+- ..|+|+|++|+.+|+.++++.|+.+|+++                  |++|..|.|+|++|+++|+.+++
T Consensus       330 --gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV------------------NiQDdDGSTALMCA~EHGhkEiv  389 (452)
T KOG0514|consen  330 --GDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADV------------------NIQDDDGSTALMCAAEHGHKEIV  389 (452)
T ss_pred             --cCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCC------------------ccccCCccHHHhhhhhhChHHHH
Confidence              4667664 57999999999999999999999999999                  99999999999999999999999


Q ss_pred             HHHHH-cCCCCCCCcC
Q 041785          165 KILTR-EDPDYPYSAN  179 (181)
Q Consensus       165 ~~Ll~-~g~~~~~~~~  179 (181)
                      ++||. -++|..+.++
T Consensus       390 klLLA~p~cd~sLtD~  405 (452)
T KOG0514|consen  390 KLLLAVPSCDISLTDV  405 (452)
T ss_pred             HHHhccCcccceeecC
Confidence            99997 5777766654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=1.7e-21  Score=144.43  Aligned_cols=121  Identities=24%  Similarity=0.276  Sum_probs=115.9

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (181)
                      .-+|||--||..|+++++++|+++|+++.+.+..|.|.||+|  |..|+.+++++|++.    |++++.++..|.|+||.
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa--~ykGh~~I~qyLle~----gADvn~ks~kGNTALH~  189 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIA--CYKGHVDIAQYLLEQ----GADVNAKSYKGNTALHD  189 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEee--eccCchHHHHHHHHh----CCCcchhcccCchHHHh
Confidence            346999999999999999999999999999999999999999  999999999999998    99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHH
Q 041785          104 AAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR  169 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  169 (181)
                      |+..|+.+++++|+.+|+.+                   .+|..|.|||..|+..|+.++|++|++
T Consensus       190 caEsG~vdivq~Ll~~ga~i-------------------~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  190 CAESGSVDIVQLLLKHGAKI-------------------DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hhhcccHHHHHHHHhCCcee-------------------eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999999887                   567889999999999999999999996

>PHA02946 ankyin-like protein; Provisional

Probab=99.86  E-value=1e-20  Score=145.78  Aligned_cols=150  Identities=13%  Similarity=0.061  Sum_probs=123.7

Q ss_pred             CCCHHHHHHHH--cCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           24 QMDPNLFKAAA--DGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        24 ~~~t~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      +..++||.++.  .++.++++.|++.|++++.++..|.||||+|  +..++.+++++|++.    |++++.+|..|.|||
T Consensus        36 g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~A--a~~g~~eiv~lLL~~----GAdin~~d~~g~TpL  109 (446)
T PHA02946         36 GNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIA--SKINNNRIVAMLLTH----GADPNACDKQHKTPL  109 (446)
T ss_pred             CCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCHH
Confidence            34689998764  3467899999999999999999999999999  999999999999997    999999999999999


Q ss_pred             HHHHHcC--CHHHHHHHHHhhhhccC-CCCCCcchHHH--------------HHHHhhcccCCCchHHHHHHHcC--CHH
Q 041785          102 HLAAKYS--HFDIVRVLIERAQLAQH-GDEEPESGIEA--------------FRQMIRMVNNEKNTALHEAVSHG--NVE  162 (181)
Q Consensus       102 ~~a~~~~--~~~~~~~L~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~g~t~l~~A~~~~--~~~  162 (181)
                      |+|+..+  ..+++++|++.|+++.. .+.++..+..+              .+.+++.+|..|+||||+|+..+  +.+
T Consensus       110 h~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~  189 (446)
T PHA02946        110 YYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKAS  189 (446)
T ss_pred             HHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHH
Confidence            9998766  47899999999998753 23333333222              13456788999999999998755  468


Q ss_pred             HHHHHHHcCCCCCCCcC
Q 041785          163 VVKILTREDPDYPYSAN  179 (181)
Q Consensus       163 ~~~~Ll~~g~~~~~~~~  179 (181)
                      ++++|+++|++++..++
T Consensus       190 ~v~~Ll~~Gadin~~d~  206 (446)
T PHA02946        190 TISWMMKLGISPSKPDH  206 (446)
T ss_pred             HHHHHHHcCCCCcccCC
Confidence            99999999999988764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=9.7e-21  Score=142.93  Aligned_cols=133  Identities=11%  Similarity=0.015  Sum_probs=117.1

Q ss_pred             cccCCCHHHHHHHH--cCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccc-cccc----
Q 041785           21 KQSQMDPNLFKAAA--DGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPAL-LLQV----   93 (181)
Q Consensus        21 ~~~~~~t~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~-~~~~----   93 (181)
                      .....+|+||.++.  .|+.+++++|+++|++++.  ..+.||+|+|  +..++.+++++|+..    |++ .+..    
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~--~~~~t~lh~A--~~~~~~eIVk~Lls~----Ga~~~n~~~~~l  183 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK--IECLNAYFRG--ICKKESSVVEFILNC----GIPDENDVKLDL  183 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC--CCCCCHHHHH--HHcCcHHHHHHHHhc----CCcccccccchh
Confidence            34458999999999  8999999999999999866  3558999999  999999999999997    653 2222    


Q ss_pred             -ccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCC
Q 041785           94 -NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDP  172 (181)
Q Consensus        94 -~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~  172 (181)
                       +..+.+++|.|+..++.+++++|++.|+++                  +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       184 ~~~~~~t~l~~a~~~~~~eIve~LIs~GADI------------------N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA  245 (437)
T PHA02795        184 YKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI------------------NQLDAGGRTLLYRAIYAGYIDLVSWLLENGA  245 (437)
T ss_pred             hhhhccchhHHHHhcCHHHHHHHHHhCcCCc------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence             134779999999999999999999999998                  8999999999999999999999999999999


Q ss_pred             CCCCCcC
Q 041785          173 DYPYSAN  179 (181)
Q Consensus       173 ~~~~~~~  179 (181)
                      +++..++
T Consensus       246 dIN~~d~  252 (437)
T PHA02795        246 NVNAVMS  252 (437)
T ss_pred             CCCCcCC
Confidence            9998765

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.85  E-value=9.9e-21  Score=148.11  Aligned_cols=135  Identities=17%  Similarity=0.129  Sum_probs=112.6

Q ss_pred             cccCCCHHHHHHHHc--CCcHHHHHHHHHhccccc-ccCCCCchhHHHHhhhhh----hhhHHHHHHHHHh---------
Q 041785           21 KQSQMDPNLFKAAAD--GSVEPFKDMAREVIESSL-TVHTKNTILHINIICQET----ENASTKFVEEILE---------   84 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~--g~~~~~~~ll~~~~~~~~-~~~~g~t~Lh~a~~~~~~----~~~~~~~l~~~~~---------   84 (181)
                      ....|.||||+|+..  ++.++++.|++.|++++. .+..|.||||+|  ++.+    +.+++++|++...         
T Consensus       141 ~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a--~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~  218 (494)
T PHA02989        141 KNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIY--LRNDIDVISIKVIKYLIKKGVNIETNNNGS  218 (494)
T ss_pred             cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHH--HhcccccccHHHHHHHHhCCCCccccCCcc
Confidence            345789999998765  578999999999998876 577899999988  6543    7788888777510         


Q ss_pred             -------------------------hccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHH
Q 041785           85 -------------------------ICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ  139 (181)
Q Consensus        85 -------------------------~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  139 (181)
                                               ..+++++.+|..|+||||+|+..++.+++++|++.|+++                
T Consensus       219 ~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi----------------  282 (494)
T PHA02989        219 ESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI----------------  282 (494)
T ss_pred             ccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc----------------
Confidence                                     012345666778999999999999999999999999998                


Q ss_pred             HhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 041785          140 MIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP  175 (181)
Q Consensus       140 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  175 (181)
                        +.+|..|+||||+|+..|+.++++.|+++++..+
T Consensus       283 --n~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        283 --YNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             --cccCCCCCCHHHHHHHcCCHHHHHHHHhcCCChH
Confidence              8999999999999999999999999999887654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=1.1e-21  Score=132.68  Aligned_cols=122  Identities=15%  Similarity=0.106  Sum_probs=65.6

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      +..|.|||.+|+++|++.++++|++.|+++....+...++|.+|  ++.|..++++.|+..    +.++|.-|.+|-|||
T Consensus       157 De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLA--t~ggytdiV~lLL~r----~vdVNvyDwNGgTpL  230 (296)
T KOG0502|consen  157 DEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLA--TRGGYTDIVELLLTR----EVDVNVYDWNGGTPL  230 (296)
T ss_pred             cccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHH--hcCChHHHHHHHHhc----CCCcceeccCCCcee
Confidence            33455555555555555555555555555554444555555555  555555555555553    555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHH
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT  168 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  168 (181)
                      -+|++.++.+|++.|+..|+++                  +..+..|++++..|+..|+. +|+..+
T Consensus       231 lyAvrgnhvkcve~Ll~sGAd~------------------t~e~dsGy~~mdlAValGyr-~Vqqvi  278 (296)
T KOG0502|consen  231 LYAVRGNHVKCVESLLNSGADV------------------TQEDDSGYWIMDLAVALGYR-IVQQVI  278 (296)
T ss_pred             eeeecCChHHHHHHHHhcCCCc------------------ccccccCCcHHHHHHHhhhH-HHHHHH
Confidence            5555555555555555555554                  44555555555555555554 333333

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=1.9e-20  Score=146.44  Aligned_cols=154  Identities=16%  Similarity=0.137  Sum_probs=103.1

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH-HhhccccccccccCCCcH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI-LEICPALLLQVNAKGDTP  100 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~g~t~  100 (181)
                      ...+.||||.|+..++.+..+.|++.|+++-..+..|.+|+|.|  ++.+..++.+.++.. ..+.+..++..+..+.||
T Consensus       151 de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~a--a~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~p  228 (929)
T KOG0510|consen  151 DENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEA--ARSGSKECMEIFLPEHGYERQTHINFDNNEKATP  228 (929)
T ss_pred             ccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHH--HHhcchhhhhhhhccccchhhcccccccCCCCcc
Confidence            34455666666666666655566666666655566666666666  666666666665551 111145566666667777


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                      ||.|+..|+.++++..++.+....   .-........+.+++..|..|.||||+|++.|+.+++..|++.|++++.++++
T Consensus       229 LhlAve~g~~e~lk~~L~n~~~~a---~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d  305 (929)
T KOG0510|consen  229 LHLAVEGGDIEMLKMCLQNGKKIA---DVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKD  305 (929)
T ss_pred             hhhhhhcCCHHHHHHHHhCccccc---hhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCC
Confidence            777777777777776666654331   01111233446788999999999999999999999999999999999888754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.84  E-value=3.2e-21  Score=130.38  Aligned_cols=129  Identities=16%  Similarity=0.075  Sum_probs=115.1

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHH
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLA  104 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a  104 (181)
                      +.+|+.+++..-+++.+..+.+..++  ..|..|.|||.||  +.+|+++++++|++.    |+++....+...++|.+|
T Consensus       129 p~s~~slsVhql~L~~~~~~~~n~VN--~~De~GfTpLiWA--aa~G~i~vV~fLL~~----GAdp~~lgk~resALsLA  200 (296)
T KOG0502|consen  129 PWSPLSLSVHQLHLDVVDLLVNNKVN--ACDEFGFTPLIWA--AAKGHIPVVQFLLNS----GADPDALGKYRESALSLA  200 (296)
T ss_pred             cCChhhHHHHHHHHHHHHHHhhcccc--CccccCchHhHHH--HhcCchHHHHHHHHc----CCChhhhhhhhhhhHhHH
Confidence            45778888877777766666655454  4899999999999  999999999999998    999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          105 AKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       105 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      ++.|..+++++|++++.++                  |..|.+|.|||-+|++-++.+|++.|+..|++++..++
T Consensus       201 t~ggytdiV~lLL~r~vdV------------------NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~d  257 (296)
T KOG0502|consen  201 TRGGYTDIVELLLTREVDV------------------NVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDD  257 (296)
T ss_pred             hcCChHHHHHHHHhcCCCc------------------ceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccc
Confidence            9999999999999999998                  99999999999999999999999999999999987654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=9.8e-21  Score=154.89  Aligned_cols=133  Identities=23%  Similarity=0.292  Sum_probs=86.6

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ..+|.||||.|+..|+.+.++.+++.++..+.....|.+++|.|  ...+...++..+++.    |+.++.++..|.|||
T Consensus       471 s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla--~~~~~v~~~~~l~~~----ga~v~~~~~r~~TpL  544 (1143)
T KOG4177|consen  471 SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLA--ADEDTVKVAKILLEH----GANVDLRTGRGYTPL  544 (1143)
T ss_pred             ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhh--hhhhhHHHHHHHhhc----CCceehhcccccchH
Confidence            44566666666666666666666665544444555566666666  666666666666554    666666666666777


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      |.|+.+|+.++|++|+++|+++                  +.+++.|+||||.|+..|+.+|+.+|+++|+++|..+
T Consensus       545 h~A~~~g~v~~VkfLLe~gAdv------------------~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  545 HVAVHYGNVDLVKFLLEHGADV------------------NAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD  603 (1143)
T ss_pred             HHHHhcCCchHHHHhhhCCccc------------------cccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc
Confidence            7777777777777777766666                  6666666777777776666667777777666666543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.84  E-value=2.8e-20  Score=113.08  Aligned_cols=89  Identities=35%  Similarity=0.456  Sum_probs=71.9

Q ss_pred             hHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHh
Q 041785           62 LHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI  141 (181)
Q Consensus        62 Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  141 (181)
                      ||+|  ++.++.+++++|++.    +.+++.    |.||||+|+..|+.+++++|++.|+++                  
T Consensus         1 L~~A--~~~~~~~~~~~ll~~----~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~------------------   52 (89)
T PF12796_consen    1 LHIA--AQNGNLEILKFLLEK----GADINL----GNTALHYAAENGNLEIVKLLLENGADI------------------   52 (89)
T ss_dssp             HHHH--HHTTTHHHHHHHHHT----TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT------------------
T ss_pred             CHHH--HHcCCHHHHHHHHHC----cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc------------------
Confidence            6788  888888888888885    555554    778888888888888888888888887                  


Q ss_pred             hcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          142 RMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       142 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      +.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        53 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   53 NSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             T-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            7788888888888888888888888888888887764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02917 ankyrin-like protein; Provisional

Probab=99.84  E-value=5.2e-20  Score=147.26  Aligned_cols=137  Identities=12%  Similarity=0.057  Sum_probs=110.8

Q ss_pred             hcccCCCHHHHHHHHc---CCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccC
Q 041785           20 IKQSQMDPNLFKAAAD---GSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAK   96 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   96 (181)
                      .....|.||||+|+..   |+.++++.|++.|++++.++..|.||||+|  +..++.++++.+++.+.+.+...+..+. 
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~A--a~~g~~~v~~~~~~~Ll~~~~~~n~~~~-  103 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEY--TNSRHVKVNKDIAMALLEATGYSNINDF-  103 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHH--HHcCChhHHHHHHHHHHhccCCCCCCCc-
Confidence            3356789999997655   889999999999999998899999999999  9988866654444333222333444332 


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHH--HcCCHHHHHHHHHcCCCC
Q 041785           97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV--SHGNVEVVKILTREDPDY  174 (181)
Q Consensus        97 g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~--~~~~~~~~~~Ll~~g~~~  174 (181)
                       .+++++|+..++.+++++|++.|+++                  +.+|..|+||||+|+  ..|+.+++++|+++|+++
T Consensus       104 -~~~~~~a~~~~~~e~vk~Ll~~Gadi------------------n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v  164 (661)
T PHA02917        104 -NIFSYMKSKNVDVDLIKVLVEHGFDL------------------SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV  164 (661)
T ss_pred             -chHHHHHhhcCCHHHHHHHHHcCCCC------------------CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc
Confidence             36778889999999999999999998                  899999999999654  578999999999999999


Q ss_pred             CCCc
Q 041785          175 PYSA  178 (181)
Q Consensus       175 ~~~~  178 (181)
                      +..+
T Consensus       165 n~~d  168 (661)
T PHA02917        165 LYED  168 (661)
T ss_pred             cccc
Confidence            8654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.8e-20  Score=130.75  Aligned_cols=133  Identities=20%  Similarity=0.158  Sum_probs=117.3

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      ..+.-|.+|||+|++.|+..+++-|+..|+..+..+....||||+|  +.+||.++++.|+..    .+++|..+.+|.|
T Consensus        29 ~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhla--aahghrdivqkll~~----kadvnavnehgnt  102 (448)
T KOG0195|consen   29 VGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLA--AAHGHRDIVQKLLSR----KADVNAVNEHGNT  102 (448)
T ss_pred             cccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhh--hhcccHHHHHHHHHH----hcccchhhccCCC
Confidence            3455688999999999999999999999999998899999999999  999999999999997    8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPY  176 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  176 (181)
                      |||+||..|...+.+-|+.+|+.+                  ++.++.|.||+..|.-.-...+.++--+.|..++.
T Consensus       103 plhyacfwgydqiaedli~~ga~v------------------~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAAV------------------NICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhcccee------------------eecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            999999999999999999999998                  89999999999987655444444444567777653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=7.4e-20  Score=119.54  Aligned_cols=128  Identities=18%  Similarity=0.132  Sum_probs=111.4

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhccc-ccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIES-SLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAA  105 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~-~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~  105 (181)
                      ..+.+|+..+.+..|+.||+..++. +.+|.+|.||||-|  +.+++.++++.|+..    |++.+.+...||||||-||
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRA--aYn~h~div~~ll~~----gAn~~a~T~~GWTPLhSAc  138 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRA--AYNGHLDIVHELLLS----GANKEAKTNEGWTPLHSAC  138 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHH--HhcCchHHHHHHHHc----cCCcccccccCccchhhhh
Confidence            4578999999999999999987765 47999999999999  999999999999997    9999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCH-HHHHHHHH-cCCCCCCCc
Q 041785          106 KYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNV-EVVKILTR-EDPDYPYSA  178 (181)
Q Consensus       106 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll~-~g~~~~~~~  178 (181)
                      ...+.+|+..|+.+|+++                  +.......||||+|+...+. ..+++|+. ++.+.-..+
T Consensus       139 kWnN~~va~~LLqhgaDV------------------nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~n  195 (228)
T KOG0512|consen  139 KWNNFEVAGRLLQHGADV------------------NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKN  195 (228)
T ss_pred             cccchhHHHHHHhccCcc------------------cccccccchhhHHhhcccchHHHHHHHhhccccChhhhc
Confidence            999999999999999998                  88888999999999987654 45666653 455444333

>PHA02917 ankyrin-like protein; Provisional

Probab=99.82  E-value=9.1e-20  Score=145.88  Aligned_cols=127  Identities=17%  Similarity=0.245  Sum_probs=101.6

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccccccccc---CC-----
Q 041785           26 DPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNA---KG-----   97 (181)
Q Consensus        26 ~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~g-----   97 (181)
                      .++++.|+..|+.+++++|++.|++++.+|..|.||||.++.+..++.+++++|++.    |++++..+.   .|     
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~----Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN----GCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc----CCCcccccccccccccccc
Confidence            356677777888888888888888888888889999985411356788888888886    887775542   23     


Q ss_pred             ------CcHHHHHHH-----------cCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCC
Q 041785           98 ------DTPLHLAAK-----------YSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN  160 (181)
Q Consensus        98 ------~t~L~~a~~-----------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  160 (181)
                            .||||+|+.           .++.+++++|++.|+++                  +.+|..|.||||+|+..|+
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv------------------n~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP------------------SSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc------------------ccCCCCCCcHHHHHHHcCC
Confidence                  589998875           45788899999988887                  8999999999999999998


Q ss_pred             H--HHHHHHHHcCCCCC
Q 041785          161 V--EVVKILTREDPDYP  175 (181)
Q Consensus       161 ~--~~~~~Ll~~g~~~~  175 (181)
                      .  +++++|++ |++++
T Consensus       242 ~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        242 IDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             CcHHHHHHHHh-CCccc
Confidence            5  79999985 88764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.81  E-value=1.1e-19  Score=143.34  Aligned_cols=133  Identities=11%  Similarity=0.085  Sum_probs=109.7

Q ss_pred             cCCCHHHHHHHHcCC----cHHHHHHHHHhc--ccccccCCCCchhHHHHhhh-hh---------hhhHHHHHHHHHhhc
Q 041785           23 SQMDPNLFKAAADGS----VEPFKDMAREVI--ESSLTVHTKNTILHINIICQ-ET---------ENASTKFVEEILEIC   86 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~----~~~~~~ll~~~~--~~~~~~~~g~t~Lh~a~~~~-~~---------~~~~~~~l~~~~~~~   86 (181)
                      ..|.||||+|+..++    .++++.|+++|+  +.+.++..|.||||.++.+. .+         ..+++++|+..    
T Consensus       376 ~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~----  451 (672)
T PHA02730        376 TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY----  451 (672)
T ss_pred             CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc----
Confidence            468899999998875    799999999887  46678889999998421022 21         12457788776    


Q ss_pred             cccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccC-CCchHHHHHHHc--CCHHH
Q 041785           87 PALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNN-EKNTALHEAVSH--GNVEV  163 (181)
Q Consensus        87 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~--~~~~~  163 (181)
                      |++++.+|..|.||||+|+..++.+++++|++.|+++                  +.++. .|.||+|+|+..  ++.++
T Consensus       452 GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdI------------------N~~d~~~g~TaL~~Aa~~~~~~~eI  513 (672)
T PHA02730        452 MDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASV------------------NTTSRSIINTAIQKSSYRRENKTKL  513 (672)
T ss_pred             ccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCC------------------CCCCCcCCcCHHHHHHHhhcCcHHH
Confidence            9999999999999999999999999999999999998                  88886 599999999974  78999


Q ss_pred             HHHHHHcCCCCCCC
Q 041785          164 VKILTREDPDYPYS  177 (181)
Q Consensus       164 ~~~Ll~~g~~~~~~  177 (181)
                      +++|+++|+++...
T Consensus       514 v~~LLs~ga~i~~I  527 (672)
T PHA02730        514 VDLLLSYHPTLETM  527 (672)
T ss_pred             HHHHHHcCCCHHHH
Confidence            99999999987543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.81  E-value=1.1e-19  Score=148.82  Aligned_cols=130  Identities=26%  Similarity=0.247  Sum_probs=124.2

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .....+.+++|.+...+....++.+++.|++.+.++..|.||||.|  +.+|+...|++|++.    |++++.+++.|+|
T Consensus       502 ~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A--~~~g~v~~VkfLLe~----gAdv~ak~~~G~T  575 (1143)
T KOG4177|consen  502 LDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVA--VHYGNVDLVKFLLEH----GADVNAKDKLGYT  575 (1143)
T ss_pred             ccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHH--HhcCCchHHHHhhhC----CccccccCCCCCC
Confidence            3445678999999999999999999999999999999999999999  999999999999998    9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      |||.|+..|+.+|+++|+++|+++                  |..|.+|.|||++|+..|+.+++++|+..+++
T Consensus       576 PLH~Aa~~G~~~i~~LLlk~GA~v------------------na~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  576 PLHQAAQQGHNDIAELLLKHGASV------------------NAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             hhhHHHHcChHHHHHHHHHcCCCC------------------CcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            999999999999999999999999                  99999999999999999999999999998887

>PHA02741 hypothetical protein; Provisional

Probab=99.80  E-value=8.3e-19  Score=118.91  Aligned_cols=107  Identities=18%  Similarity=0.157  Sum_probs=93.0

Q ss_pred             cccCCCCchhHHHHhhhhhhhhHHHHHHHHH--hhccccccccccCCCcHHHHHHHcCC----HHHHHHHHHhhhhccCC
Q 041785           53 LTVHTKNTILHINIICQETENASTKFVEEIL--EICPALLLQVNAKGDTPLHLAAKYSH----FDIVRVLIERAQLAQHG  126 (181)
Q Consensus        53 ~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~g~t~L~~a~~~~~----~~~~~~L~~~~~~~~~~  126 (181)
                      .++..|.||||+|  +..|+.++++.|+..+  ...+.+++.+|..|+||||+|+..++    .+++++|++.|+++   
T Consensus        16 ~~~~~g~t~Lh~A--a~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi---   90 (169)
T PHA02741         16 EKNSEGENFFHEA--ARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI---   90 (169)
T ss_pred             ccccCCCCHHHHH--HHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC---
Confidence            3678999999999  9999999999886542  12357889999999999999999998    58899999999888   


Q ss_pred             CCCCcchHHHHHHHhhcccC-CCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCcC
Q 041785          127 DEEPESGIEAFRQMIRMVNN-EKNTALHEAVSHGNVEVVKILTR-EDPDYPYSAN  179 (181)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~  179 (181)
                                     +.++. .|+||||+|+..++.+++++|++ .|++++..+.
T Consensus        91 ---------------n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  130 (169)
T PHA02741         91 ---------------NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA  130 (169)
T ss_pred             ---------------CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence                           77775 89999999999999999999998 5999887654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.80  E-value=5.9e-19  Score=139.25  Aligned_cols=132  Identities=8%  Similarity=-0.039  Sum_probs=112.7

Q ss_pred             hcccCCCHHHHHHHHcC---CcHHHHHHHHHhcccccccCCCCchhHHHHhhhhh--hhhHHHHHHHHHhhccc--cccc
Q 041785           20 IKQSQMDPNLFKAAADG---SVEPFKDMAREVIESSLTVHTKNTILHINIICQET--ENASTKFVEEILEICPA--LLLQ   92 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~--~~~~~~~l~~~~~~~~~--~~~~   92 (181)
                      .+...|.||||+|+..|   +.++++.|+++|++++.+|..|.||||+|  +..+  +.+++++|+..    |+  +.+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~A--a~~~~~~~eIv~~Ll~~----~~~~~~~~  109 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVY--SKRKYVKSQIVHLLISS----YSNASNEL  109 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHH--HHcCCCcHHHHHHHHhc----CCCCCccc
Confidence            44557999999999997   48999999999999999999999999999  8755  79999999986    54  4466


Q ss_pred             cccCCCcHHHHHHH--cCCHHHHHHHHH-hhhhccCCCCCCcchHHHHHHHhhcc----c-CCCchHHHHHHHcCCHHHH
Q 041785           93 VNAKGDTPLHLAAK--YSHFDIVRVLIE-RAQLAQHGDEEPESGIEAFRQMIRMV----N-NEKNTALHEAVSHGNVEVV  164 (181)
Q Consensus        93 ~~~~g~t~L~~a~~--~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~g~t~l~~A~~~~~~~~~  164 (181)
                      .+.-+.+||+.++.  .++.+++++|++ .+.++                  +..    + ..|.+|++++...++.++|
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~------------------~~~~~~~~~~~~~~~~yl~~~~~~~eIv  171 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRP------------------SKNTNYYIHCLGLVDIYVTTPNPRPEVL  171 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCCh------------------hhhhhhhccccchhhhhHhcCCCchHHH
Confidence            67779999999888  888999999997 44555                  222    2 3789999999999999999


Q ss_pred             HHHHHcCCCCC
Q 041785          165 KILTREDPDYP  175 (181)
Q Consensus       165 ~~Ll~~g~~~~  175 (181)
                      ++|+++|++++
T Consensus       172 klLi~~g~~v~  182 (672)
T PHA02730        172 LWLLKSECYST  182 (672)
T ss_pred             HHHHHcCCccc
Confidence            99999999984

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=7.2e-19  Score=106.86  Aligned_cols=85  Identities=28%  Similarity=0.357  Sum_probs=77.9

Q ss_pred             HHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcC
Q 041785           29 LFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYS  108 (181)
Q Consensus        29 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~  108 (181)
                      ||+|++.|+.+++++|++.+.+.+.    |.||||+|  +..++.+++++|++.    +.+++.++..|+||||+|+..+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYA--AENGNLEIVKLLLEN----GADINSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHH--HHTTTHHHHHHHHHT----TTCTT-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHH--HHcCCHHHHHHHHHh----cccccccCCCCCCHHHHHHHcC
Confidence            7999999999999999998776533    89999999  999999999999997    9999999999999999999999


Q ss_pred             CHHHHHHHHHhhhhc
Q 041785          109 HFDIVRVLIERAQLA  123 (181)
Q Consensus       109 ~~~~~~~L~~~~~~~  123 (181)
                      +.+++++|++.|+++
T Consensus        71 ~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   71 NLEIVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHHHHTTT-T
T ss_pred             CHHHHHHHHHcCCCC
Confidence            999999999999887

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.79  E-value=3.5e-18  Score=109.59  Aligned_cols=122  Identities=27%  Similarity=0.365  Sum_probs=111.4

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      ..|.||||.|+..|+.++++.|+..+......+..|.+|+|.|  +..+..+++++++..    +..++..+..|.||+|
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a--~~~~~~~~~~~ll~~----~~~~~~~~~~~~~~l~   78 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLA--AKNGHLEIVKLLLEK----GADVNARDKDGNTPLH   78 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHH--HHcCCHHHHHHHHHc----CCCccccCCCCCCHHH
Confidence            5689999999999999999999998887677889999999999  999999999999997    7778888889999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHH
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT  168 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  168 (181)
                      +|+..++.+++++|++.+...                  +..+..|.||+++|...++.+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADV------------------NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999998666                  677889999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=2.6e-18  Score=129.19  Aligned_cols=139  Identities=18%  Similarity=0.158  Sum_probs=122.0

Q ss_pred             hhcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhh-------------
Q 041785           19 EIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEI-------------   85 (181)
Q Consensus        19 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~-------------   85 (181)
                      +....+|.|+||-++...+.++|+++++.|++++..|..|+||||.|  +.-++..++++++.+...             
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaa--ascg~~~i~~~li~~gA~~~avNsdg~~P~d  144 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAA--ASCGYLNIVEYLIQHGANLLAVNSDGNMPYD  144 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhh--cccccHHHHHHHHHhhhhhhhccCCCCCccc
Confidence            45567899999999999999999999999999999999999999999  999999999999987211             


Q ss_pred             ------------------------------------------ccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhc
Q 041785           86 ------------------------------------------CPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLA  123 (181)
Q Consensus        86 ------------------------------------------~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~  123 (181)
                                                                .|...+.....|.|.||+|+..|..++.++|+..|.++
T Consensus       145 l~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~  224 (527)
T KOG0505|consen  145 LAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV  224 (527)
T ss_pred             cccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc
Confidence                                                      12222224445899999999999999999999999998


Q ss_pred             cCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785          124 QHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                                        +.+|..||||||.|+.=|..+++++|+++|++++..
T Consensus       225 ------------------~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  225 ------------------NIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             ------------------ccccccCCCcccHHHHhhhHhHHHHHHHhhcccchh
Confidence                              899999999999999999999999999999998754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.76  E-value=7e-18  Score=138.95  Aligned_cols=119  Identities=18%  Similarity=0.120  Sum_probs=100.5

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH-----------------
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI-----------------   82 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~-----------------   82 (181)
                      ..+..|.||||+|+..|+.++++.|++.|++++.+|..|.||||+|  +..++.++++.|+..                 
T Consensus       553 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A--~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa  630 (823)
T PLN03192        553 IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA--ISAKHHKIFRILYHFASISDPHAAGDLLCTAA  630 (823)
T ss_pred             CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH--HHhCCHHHHHHHHhcCcccCcccCchHHHHHH
Confidence            4456799999999999999999999999999999999999999988  777777776665321                 


Q ss_pred             ----------HhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCC-chH
Q 041785           83 ----------LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK-NTA  151 (181)
Q Consensus        83 ----------~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~t~  151 (181)
                                +.+.|++++.+|..|+||||+|+..|+.+++++|++.|+++                  +..|..| .||
T Consensus       631 ~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv------------------~~~~~~g~~t~  692 (823)
T PLN03192        631 KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV------------------DKANTDDDFSP  692 (823)
T ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCC------------------CCCCCCCCCCH
Confidence                      23348899999999999999999999999999999999988                  6777777 888


Q ss_pred             HHHHHHc
Q 041785          152 LHEAVSH  158 (181)
Q Consensus       152 l~~A~~~  158 (181)
                      ..++...
T Consensus       693 ~~l~~~~  699 (823)
T PLN03192        693 TELRELL  699 (823)
T ss_pred             HHHHHHH
Confidence            8776554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.75  E-value=8.9e-18  Score=113.46  Aligned_cols=113  Identities=17%  Similarity=0.124  Sum_probs=92.6

Q ss_pred             HhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHH---HHHHHHHhhhhc
Q 041785           47 EVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFD---IVRVLIERAQLA  123 (181)
Q Consensus        47 ~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~---~~~~L~~~~~~~  123 (181)
                      ++++++..+..+.+++|.|  ++.++.+.+..+++.+...+..++.++..|+||||+|+..++.+   ++++|++.|+++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a--~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRI--CRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHH--HHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            3455555677888999999  99888755544444333348888889999999999999998865   489999999988


Q ss_pred             cCCCCCCcchHHHHHHHhhccc-CCCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCcC
Q 041785          124 QHGDEEPESGIEAFRQMIRMVN-NEKNTALHEAVSHGNVEVVKILTR-EDPDYPYSAN  179 (181)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~  179 (181)
                                        +.++ ..|+||||+|+..++.+++++|+. .|++++.+++
T Consensus        87 ------------------n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~  126 (166)
T PHA02743         87 ------------------NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY  126 (166)
T ss_pred             ------------------CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC
Confidence                              8887 589999999999999999999995 8999987664

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=3.9e-18  Score=120.06  Aligned_cols=123  Identities=24%  Similarity=0.215  Sum_probs=106.6

Q ss_pred             HHcCCcHHHHHHHH-HhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHH
Q 041785           33 AADGSVEPFKDMAR-EVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFD  111 (181)
Q Consensus        33 ~~~g~~~~~~~ll~-~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~  111 (181)
                      |+.|+.-.++.-++ ..-+.+.-|..|.+|||||  |+.|+..+++.|+..    |+-+|..+....||||+|+..|+.+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwa--akegh~aivemll~r----garvn~tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWA--AKEGHVAIVEMLLSR----GARVNSTNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhh--hhcccHHHHHHHHhc----ccccccccCCCCcchhhhhhcccHH
Confidence            45555544444444 2233345788899999999  999999999999997    9999999999999999999999999


Q ss_pred             HHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          112 IVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       112 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      ++..|+++.+++                  |..+..|+|||||||.-|.-.+++-|++.|+.++..+.
T Consensus        82 ivqkll~~kadv------------------navnehgntplhyacfwgydqiaedli~~ga~v~icnk  131 (448)
T KOG0195|consen   82 IVQKLLSRKADV------------------NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNK  131 (448)
T ss_pred             HHHHHHHHhccc------------------chhhccCCCchhhhhhhcHHHHHHHHHhccceeeeccc
Confidence            999999999998                  99999999999999999999999999999999988764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.75  E-value=8.7e-18  Score=131.56  Aligned_cols=128  Identities=11%  Similarity=0.079  Sum_probs=108.3

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcccccccCCC--CchhHHHHhhhhhhhh---HHHHHHHHHhhccccccccccCCCc
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESSLTVHTK--NTILHINIICQETENA---STKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g--~t~Lh~a~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      ....++.|+..|+.++++.|++.|++++.++..|  .||||+|  +.....+   ++++++..    |++++.+|..|+|
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A--~~n~~~~v~~IlklLIs~----GADIN~kD~~G~T  412 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPT--LSIHESDVLSILKLCKPY----IDDINKIDKHGRS  412 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHH--HHhccHhHHHHHHHHHhc----CCccccccccCcc
Confidence            4556899999999999999999999998877764  6899987  6554443   35555554    9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHH--cC--------CHHHHHHHHH
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVS--HG--------NVEVVKILTR  169 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~--~~--------~~~~~~~Ll~  169 (181)
                      |||+|+..++.+++++|++.|+++                  +.++..|.||+++|+.  .+        ..++++.|++
T Consensus       413 PLh~Aa~~~n~eivelLLs~GADI------------------N~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs  474 (631)
T PHA02792        413 ILYYCIESHSVSLVEWLIDNGADI------------------NITTKYGSTCIGICVILAHACIPEIAELYIKILEIILS  474 (631)
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCC------------------CCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998                  8999999999999986  22        2567999999


Q ss_pred             cCCCCCC
Q 041785          170 EDPDYPY  176 (181)
Q Consensus       170 ~g~~~~~  176 (181)
                      +|+++..
T Consensus       475 ~~p~i~~  481 (631)
T PHA02792        475 KLPTIEC  481 (631)
T ss_pred             cCCChhH
Confidence            9988754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.74  E-value=5e-18  Score=138.76  Aligned_cols=133  Identities=15%  Similarity=0.114  Sum_probs=109.5

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhccccccc--------------CCCCchhHHHHhhhhhhhhHHHHHHHHHhhcc
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTV--------------HTKNTILHINIICQETENASTKFVEEILEICP   87 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~--------------~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~   87 (181)
                      ...|.||||+|+..|+.++++.|++.|++++.++              ..|.+|||.|  +..++.++++.|++.    |
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~A--a~~~~~~iv~lLl~~----g  198 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAA--ACLGSPSIVALLSED----P  198 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHH--HHhCCHHHHHHHhcC----C
Confidence            3468999999999999999999999998887432              3589999999  999999999999986    8


Q ss_pred             ccccccccCCCcHHHHHHHcC---------CHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHc
Q 041785           88 ALLLQVNAKGDTPLHLAAKYS---------HFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSH  158 (181)
Q Consensus        88 ~~~~~~~~~g~t~L~~a~~~~---------~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  158 (181)
                      ++++.+|..|+||||+|+..+         ...+.+++++.++....           .....+..|..|.||||+|+..
T Consensus       199 adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~-----------~~el~~i~N~~g~TPL~~A~~~  267 (743)
T TIGR00870       199 ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD-----------SKELEVILNHQGLTPLKLAAKE  267 (743)
T ss_pred             cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC-----------hHhhhhhcCCCCCCchhhhhhc
Confidence            999999999999999999886         23456667666554300           0011256789999999999999


Q ss_pred             CCHHHHHHHHHcC
Q 041785          159 GNVEVVKILTRED  171 (181)
Q Consensus       159 ~~~~~~~~Ll~~g  171 (181)
                      |+.+++++|++.+
T Consensus       268 g~~~l~~lLL~~~  280 (743)
T TIGR00870       268 GRIVLFRLKLAIK  280 (743)
T ss_pred             CCccHHHHHHHHH
Confidence            9999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=1.5e-17  Score=108.88  Aligned_cols=117  Identities=20%  Similarity=0.145  Sum_probs=103.1

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      ..+.++.||||-|+.+|+.++++.|+..|+++.++...|+||||.|  |...+.+++..|+.+    |++++.+....+|
T Consensus        92 trD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSA--ckWnN~~va~~LLqh----gaDVnA~t~g~lt  165 (228)
T KOG0512|consen   92 TRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSA--CKWNNFEVAGRLLQH----GADVNAQTKGLLT  165 (228)
T ss_pred             ccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhh--hcccchhHHHHHHhc----cCcccccccccch
Confidence            5567899999999999999999999999999999999999999999  999999999999998    9999999999999


Q ss_pred             HHHHHHHcCCHH-HHHHHHH-hhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCC
Q 041785          100 PLHLAAKYSHFD-IVRVLIE-RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN  160 (181)
Q Consensus       100 ~L~~a~~~~~~~-~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  160 (181)
                      |||+|+...+.. .+++|+. ++..+                  ..++..+.||+.+|-+.+-
T Consensus       166 pLhlaa~~rn~r~t~~~Ll~dryi~p------------------g~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  166 PLHLAAGNRNSRDTLELLLHDRYIHP------------------GLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhHHhhcccchHHHHHHHhhccccCh------------------hhhcCccchHHHHHHHhhh
Confidence            999999887654 5666654 34444                  6778899999999998753

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=3.4e-17  Score=119.17  Aligned_cols=103  Identities=17%  Similarity=0.064  Sum_probs=90.7

Q ss_pred             cccCCCCchh-HHHHhhhhhhhhHHHHHHHHHhhccccccccc----cCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCC
Q 041785           53 LTVHTKNTIL-HINIICQETENASTKFVEEILEICPALLLQVN----AKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGD  127 (181)
Q Consensus        53 ~~~~~g~t~L-h~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~  127 (181)
                      .+|..|.+++ |.|  +..++.++++.|++.    |++++.++    ..|.||||+|+..++.+++++|++.|+++    
T Consensus        27 ~~d~~~~~~lL~~A--~~~~~~eivk~LL~~----GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV----   96 (300)
T PHA02884         27 KKNKICIANILYSS--IKFHYTDIIDAILKL----GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV----   96 (300)
T ss_pred             ccCcCCCCHHHHHH--HHcCCHHHHHHHHHC----CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----
Confidence            3677777765 566  778899999999997    99999874    58999999999999999999999999998    


Q ss_pred             CCCcchHHHHHHHhhcc-cCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          128 EEPESGIEAFRQMIRMV-NNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       128 ~~~~~~~~~~~~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                                    +.+ +..|.||||+|+..++.+++++|+++|++++..++
T Consensus        97 --------------N~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~  135 (300)
T PHA02884         97 --------------NRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTN  135 (300)
T ss_pred             --------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence                          775 46799999999999999999999999999988754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.72  E-value=2.2e-17  Score=124.30  Aligned_cols=147  Identities=22%  Similarity=0.245  Sum_probs=125.5

Q ss_pred             HHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHc
Q 041785           28 NLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKY  107 (181)
Q Consensus        28 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~  107 (181)
                      .+.-|+..|+.+-+..|+..|++++..+.+|.|+||.+  |.-.+.++++++++.    ++.++.+|..||||||.|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~--~id~~~e~v~~l~e~----ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQA--CIDDNLEMVKFLVEN----GANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHH--HhcccHHHHHHHHHh----cCCccccccccCCcchhhccc
Confidence            35677899999999999999999998999999999999  999999999999998    999999999999999999999


Q ss_pred             CCHHHHHHHHHhhhhccCCCCCCcchHHH-----------------------H------------------HHHhhcccC
Q 041785          108 SHFDIVRVLIERAQLAQHGDEEPESGIEA-----------------------F------------------RQMIRMVNN  146 (181)
Q Consensus       108 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~-----------------------~------------------~~~~~~~~~  146 (181)
                      |+..++++|+..|+++...+.+...+...                       .                  +...++++.
T Consensus       117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~  196 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA  196 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc
Confidence            99999999999999875443332221100                       0                  134556777


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          147 EKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       147 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                      .|.|.||+|+..|..++.++|+.+|.+++..+.+
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d  230 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSVNIKDYD  230 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCccccccc
Confidence            7999999999999999999999999999887754

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.71  E-value=7.7e-17  Score=131.82  Aligned_cols=147  Identities=18%  Similarity=0.109  Sum_probs=97.0

Q ss_pred             ccCCCHHHH-HHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccc------ccc--
Q 041785           22 QSQMDPNLF-KAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPAL------LLQ--   92 (181)
Q Consensus        22 ~~~~~t~l~-~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~------~~~--   92 (181)
                      +..|.|||| .|+..++.++++.|++.+.    .+..|.||||.|  +.. ..+.++.++..+...+..      ++.  
T Consensus        49 d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A--~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~  121 (743)
T TIGR00870        49 DRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAI--SLE-YVDAVEAILLHLLAAFRKSGPLELANDQY  121 (743)
T ss_pred             CccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHH--Hhc-cHHHHHHHHHHHhhcccccCchhhhcccc
Confidence            346778888 6777777777777777655    466788888877  652 223333333332211211      111  


Q ss_pred             --cccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHc
Q 041785           93 --VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE  170 (181)
Q Consensus        93 --~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  170 (181)
                        ....|.||||+|+..++.++++.|+++|+++...........    .........|.||||+|+..|+.+++++|+++
T Consensus       122 ~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~----~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       122 TSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK----SQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhc----CCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence              124699999999999999999999999998842211110000    00001124689999999999999999999999


Q ss_pred             CCCCCCCcC
Q 041785          171 DPDYPYSAN  179 (181)
Q Consensus       171 g~~~~~~~~  179 (181)
                      |+|++..++
T Consensus       198 gadin~~d~  206 (743)
T TIGR00870       198 PADILTADS  206 (743)
T ss_pred             CcchhhHhh
Confidence            999987664

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.70  E-value=7.3e-17  Score=116.62  Aligned_cols=125  Identities=18%  Similarity=0.138  Sum_probs=107.2

Q ss_pred             hcccCCCHHHHHHHHc-----CCcHHHHHHHHHhcccccc-cCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccccccc
Q 041785           20 IKQSQMDPNLFKAAAD-----GSVEPFKDMAREVIESSLT-VHTKNTILHINIICQETENASTKFVEEILEICPALLLQV   93 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~-----g~~~~~~~ll~~~~~~~~~-~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~   93 (181)
                      .+.+-|+||+++++..     .+..+|..|...| +++++ ...|+|+|++|  +.+|..++++.|+..    ++++|++
T Consensus       297 ~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLA--VSHGr~d~vk~LLac----gAdVNiQ  369 (452)
T KOG0514|consen  297 QQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLA--VSHGRVDMVKALLAC----GADVNIQ  369 (452)
T ss_pred             ccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhhhh--hhcCcHHHHHHHHHc----cCCCccc
Confidence            3456789999998865     4778899999854 33322 45699999999  999999999999996    9999999


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhh-hhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHH
Q 041785           94 NAKGDTPLHLAAKYSHFDIVRVLIERA-QLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR  169 (181)
Q Consensus        94 ~~~g~t~L~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  169 (181)
                      |..|.|+|+.|+.+|+.+++++|+... ++.                  ...|.+|.|+|.+|...|+.+|.-+|..
T Consensus       370 DdDGSTALMCA~EHGhkEivklLLA~p~cd~------------------sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  370 DDDGSTALMCAAEHGHKEIVKLLLAVPSCDI------------------SLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             cCCccHHHhhhhhhChHHHHHHHhccCcccc------------------eeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            999999999999999999999999863 443                  7889999999999999999999887764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=9.1e-17  Score=126.25  Aligned_cols=141  Identities=13%  Similarity=0.058  Sum_probs=120.8

Q ss_pred             CCCchhhcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccc-----------------------cCCCCchhHHHHhhhh
Q 041785           14 LDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLT-----------------------VHTKNTILHINIICQE   70 (181)
Q Consensus        14 ~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~-----------------------~~~g~t~Lh~a~~~~~   70 (181)
                      ....-..+..-|.||||+|+.+.+.++|+.|++.|++.+++                       -+.|+.||.+|  |.-
T Consensus       173 ind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfA--AC~  250 (782)
T KOG3676|consen  173 INDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFA--ACT  250 (782)
T ss_pred             hhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHH--HHc
Confidence            34444455667999999999999999999999988887622                       13478999999  999


Q ss_pred             hhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCch
Q 041785           71 TENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNT  150 (181)
Q Consensus        71 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  150 (181)
                      ++.++++.|++.    +++++.+|..|+|.||..+..-..++...++++|+..                +..++|..|-|
T Consensus       251 nq~eivrlLl~~----gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~----------------l~~v~N~qgLT  310 (782)
T KOG3676|consen  251 NQPEIVRLLLAH----GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA----------------LEHVRNNQGLT  310 (782)
T ss_pred             CCHHHHHHHHhc----CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc----------------cccccccCCCC
Confidence            999999999997    9999999999999999999998889999999999871                12788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC
Q 041785          151 ALHEAVSHGNVEVVKILTREDPDYPY  176 (181)
Q Consensus       151 ~l~~A~~~~~~~~~~~Ll~~g~~~~~  176 (181)
                      ||.+|++.|..++.+.++++.....|
T Consensus       311 PLtLAaklGk~emf~~ile~~k~~~W  336 (782)
T KOG3676|consen  311 PLTLAAKLGKKEMFQHILERRKFTDW  336 (782)
T ss_pred             hHHHHHHhhhHHHHHHHHHhhcccce
Confidence            99999999999999999998444433

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.69  E-value=1.8e-16  Score=93.25  Aligned_cols=90  Identities=20%  Similarity=0.183  Sum_probs=83.3

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAK  106 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~  106 (181)
                      -.+.+++++|.++.|+..+..|.+.+.. ..|++|||+|  +..|+.+++++|+..    |++++.+|+.|-|||.-|++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyA--AD~GQl~ilefli~i----GA~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYA--ADYGQLSILEFLISI----GANIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHh--hhcchHHHHHHHHHh----ccccCCccccCCcHHHHHHH
Confidence            3478999999999999999989887753 4899999999  999999999999997    99999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhhc
Q 041785          107 YSHFDIVRVLIERAQLA  123 (181)
Q Consensus       107 ~~~~~~~~~L~~~~~~~  123 (181)
                      .|+.+|+++|++.|++-
T Consensus        77 EGH~~cVklLL~~GAdr   93 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADR   93 (117)
T ss_pred             HhhHHHHHHHHHcCccc
Confidence            99999999999999986

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.69  E-value=1.4e-16  Score=93.68  Aligned_cols=92  Identities=25%  Similarity=0.267  Sum_probs=81.8

Q ss_pred             hhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHH
Q 041785           61 ILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQM  140 (181)
Q Consensus        61 ~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  140 (181)
                      -+.|+  .++|..+-++..+..    +.+++..- .|++|||+|+..|+.+++++|+..|+++                 
T Consensus         5 ~~~W~--vkNG~~DeVk~~v~~----g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i-----------------   60 (117)
T KOG4214|consen    5 SVAWN--VKNGEIDEVKQSVNE----GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANI-----------------   60 (117)
T ss_pred             hHhhh--hccCcHHHHHHHHHc----cccHHHHh-CCcccchHhhhcchHHHHHHHHHhcccc-----------------
Confidence            46788  899999988877775    66666554 8999999999999999999999999998                 


Q ss_pred             hhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785          141 IRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus       141 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                       +.+|+.|-|||--|+..|+.+||++|++.|++-+..
T Consensus        61 -~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~   96 (117)
T KOG4214|consen   61 -QDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIH   96 (117)
T ss_pred             -CCccccCCcHHHHHHHHhhHHHHHHHHHcCccccee
Confidence             899999999999999999999999999999997543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.68  E-value=7.4e-17  Score=107.80  Aligned_cols=97  Identities=11%  Similarity=0.036  Sum_probs=87.2

Q ss_pred             ccCCCHHHHHHHHcCCcH---HHHHHHHHhccccccc-CCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCC
Q 041785           22 QSQMDPNLFKAAADGSVE---PFKDMAREVIESSLTV-HTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKG   97 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~---~~~~ll~~~~~~~~~~-~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   97 (181)
                      ...|.||||+|+..|+.+   +++.|++.|++.+.++ ..|.||||+|  +..++.+++++|+..   .+.+++.++..|
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A--~~~~~~~i~~~Ll~~---~g~d~n~~~~~g  126 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIA--VYTQNYELATWLCNQ---PGVNMEILNYAF  126 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHH--HHhCCHHHHHHHHhC---CCCCCccccCCC
Confidence            567999999999999874   6888999999998877 4899999999  999999999999863   378999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhc
Q 041785           98 DTPLHLAAKYSHFDIVRVLIERAQLA  123 (181)
Q Consensus        98 ~t~L~~a~~~~~~~~~~~L~~~~~~~  123 (181)
                      .||||+|+..++.+++++|+..|++.
T Consensus       127 ~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        127 KTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999998765

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.68  E-value=5.3e-16  Score=109.21  Aligned_cols=124  Identities=27%  Similarity=0.269  Sum_probs=115.8

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhh-----hhHHHHHHHHHhhccc---ccccccc
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETE-----NASTKFVEEILEICPA---LLLQVNA   95 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~-----~~~~~~l~~~~~~~~~---~~~~~~~   95 (181)
                      .+.++++.++..+....+++++..+++++.++..|.||||+|  +..++     .++++.++..    +.   ..+.++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~~~~~~ll~~----g~~~~~~~~~~~  145 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLA--ALNGNPPEGNIEVAKLLLEA----GADLDVNNLRDE  145 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHH--HhcCCcccchHHHHHHHHHc----CCCCCCccccCC
Confidence            367899999999999999999999999999999999999999  99999     9999999997    77   6677799


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcC
Q 041785           96 KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRED  171 (181)
Q Consensus        96 ~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  171 (181)
                      .|.||||+|+..|+.++++.|++.++++                  +.++..|.|++++|+..++.+++..++..+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~------------------~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADP------------------NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCC------------------cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999988                  788999999999999999999999999875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.68  E-value=6.8e-17  Score=126.02  Aligned_cols=128  Identities=25%  Similarity=0.248  Sum_probs=110.2

Q ss_pred             hhcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCC
Q 041785           19 EIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGD   98 (181)
Q Consensus        19 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (181)
                      +.++..|.|+||.|+.+|+.++++.|++..+-....+..|.+|||+|  ++.|+.++++.++..    +..+|.++..|.
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhla--aw~g~~e~vkmll~q----~d~~na~~~e~~  116 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLA--AWNGNLEIVKMLLLQ----TDILNAVNIENE  116 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEeh--hhcCcchHHHHHHhc----ccCCCcccccCc
Confidence            34456788999999999999999999886666666778899999999  999999999988887    677888888899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHc
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE  170 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  170 (181)
                      ||||.|++.|+.+++.+|+.++++.                  -.+|..+.|++.+|++.|..++++.|++.
T Consensus       117 tplhlaaqhgh~dvv~~Ll~~~adp------------------~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  117 TPLHLAAQHGHLEVVFYLLKKNADP------------------FIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             CccchhhhhcchHHHHHHHhcCCCc------------------cccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            9999999999999999999998887                  77888899999999999999999988876

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.67  E-value=1.4e-16  Score=124.26  Aligned_cols=92  Identities=36%  Similarity=0.454  Sum_probs=47.6

Q ss_pred             cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcc
Q 041785           53 LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPES  132 (181)
Q Consensus        53 ~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~  132 (181)
                      ..|.+|.|+||.|  +..++.++++.|++.    ...++..+..|.+|||+|++.|+.+++++++..+..+         
T Consensus        44 ~qd~~gfTalhha--~Lng~~~is~llle~----ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~---------  108 (854)
T KOG0507|consen   44 LQDYSGFTLLHHA--VLNGQNQISKLLLDY----EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL---------  108 (854)
T ss_pred             ccCccchhHHHHH--HhcCchHHHHHHhcc----hhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCC---------
Confidence            3445555555555  555555555555554    4444444455555555555555555555555554333         


Q ss_pred             hHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHH
Q 041785          133 GIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT  168 (181)
Q Consensus       133 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  168 (181)
                               +..+..|.||||.|+.+|+.+++.+|+
T Consensus       109 ---------na~~~e~~tplhlaaqhgh~dvv~~Ll  135 (854)
T KOG0507|consen  109 ---------NAVNIENETPLHLAAQHGHLEVVFYLL  135 (854)
T ss_pred             ---------CcccccCcCccchhhhhcchHHHHHHH
Confidence                     444555555555555555555555554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.62  E-value=2e-15  Score=82.80  Aligned_cols=54  Identities=37%  Similarity=0.634  Sum_probs=45.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHH
Q 041785           97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT  168 (181)
Q Consensus        97 g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  168 (181)
                      |.||||+|+..|+.+++++|++.|.++                  +.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di------------------n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI------------------NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT------------------T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999888                  888999999999999999999999986

...

>PHA02792 ankyrin-like protein; Provisional

Probab=99.62  E-value=7.1e-15  Score=115.44  Aligned_cols=127  Identities=10%  Similarity=0.065  Sum_probs=107.9

Q ss_pred             HHHHHHHHcC--CcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCC--CcHHH
Q 041785           27 PNLFKAAADG--SVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKG--DTPLH  102 (181)
Q Consensus        27 t~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g--~t~L~  102 (181)
                      -.||.=...+  +.++++.|++.|++..  ......+++.|  +..++.+++++|+..    |++++.+|..|  .||||
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~A--a~~gn~eIVelLIs~----GADIN~kD~~g~~~TpLh  379 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQK--FDNRDPKVVEYILKN----GNVVVEDDDNIINIMPLF  379 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHH--HHcCCHHHHHHHHHc----CCchhhhcCCCCChhHHH
Confidence            4567667777  6789999999999863  23356678899  999999999999997    99999998765  69999


Q ss_pred             HHHHcCCHH---HHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          103 LAAKYSHFD---IVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       103 ~a~~~~~~~---~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +|+.....+   ++++|++.|+++                  +.+|..|+||||+|+..++.+++++|+++|++++..++
T Consensus       380 ~A~~n~~~~v~~IlklLIs~GADI------------------N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~  441 (631)
T PHA02792        380 PTLSIHESDVLSILKLCKPYIDDI------------------NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTK  441 (631)
T ss_pred             HHHHhccHhHHHHHHHHHhcCCcc------------------ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            987766644   578889999998                  89999999999999999999999999999999987764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.62  E-value=1.2e-14  Score=93.00  Aligned_cols=101  Identities=32%  Similarity=0.429  Sum_probs=91.0

Q ss_pred             ccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcch
Q 041785           54 TVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESG  133 (181)
Q Consensus        54 ~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  133 (181)
                      ++..|.||||+|  +..++.+++++++..    +...+..+..|.+|||.|+..+..+++++|++.+..+          
T Consensus         3 ~~~~g~t~l~~a--~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~----------   66 (126)
T cd00204           3 RDEDGRTPLHLA--ASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV----------   66 (126)
T ss_pred             cCcCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc----------
Confidence            467899999999  999999999999987    7777888899999999999999999999999998766          


Q ss_pred             HHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          134 IEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       134 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                              +..+..|.||+|+|+..++.+++++|+++|.+++..+
T Consensus        67 --------~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~  103 (126)
T cd00204          67 --------NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD  103 (126)
T ss_pred             --------cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccC
Confidence                    6778899999999999999999999999987766554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.58  E-value=1.3e-14  Score=114.39  Aligned_cols=134  Identities=19%  Similarity=0.135  Sum_probs=112.4

Q ss_pred             ccCCCHHHHHHHHc---CCcHHHHHHHHHhccc---c--cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccccccc
Q 041785           22 QSQMDPNLFKAAAD---GSVEPFKDMAREVIES---S--LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQV   93 (181)
Q Consensus        22 ~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~---~--~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~   93 (181)
                      -.-|+|.||.|+.+   ++-++++.|++..+..   .  .-.+.|.||||+|  ..+.+.++|..|++.    |++++.+
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiA--Iv~~~~~~V~lLl~~----gADV~aR  213 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIA--IVNRDAELVRLLLAA----GADVHAR  213 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHH--HHhccHHHHHHHHHc----CCchhhH
Confidence            45689999999984   4557888888843222   2  2346799999999  889999999999997    8877763


Q ss_pred             -----------------------ccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCch
Q 041785           94 -----------------------NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNT  150 (181)
Q Consensus        94 -----------------------~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  150 (181)
                                             -+.|..||.+|+-.++.+|+++|+++|+++                  +.+|..|+|
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~------------------~aqDS~GNT  275 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP------------------NAQDSNGNT  275 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC------------------CccccCCCh
Confidence                                   124788999999999999999999999998                  999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC--CCCCcC
Q 041785          151 ALHEAVSHGNVEVVKILTREDPD--YPYSAN  179 (181)
Q Consensus       151 ~l~~A~~~~~~~~~~~Ll~~g~~--~~~~~~  179 (181)
                      .||..+.+-..+|..+++++|++  ...+|+
T Consensus       276 VLH~lVi~~~~~My~~~L~~ga~~l~~v~N~  306 (782)
T KOG3676|consen  276 VLHMLVIHFVTEMYDLALELGANALEHVRNN  306 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence            99999999999999999999999  666554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.57  E-value=1.3e-14  Score=116.91  Aligned_cols=87  Identities=22%  Similarity=0.253  Sum_probs=83.5

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAK  106 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~  106 (181)
                      ..|+.|+..|+.+.++.|++.|++++.+|..|.||||+|  +..++.+++++|++.    |++++.+|..|.||||+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~A--a~~g~~eiv~~LL~~----Gadvn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIA--CANGHVQVVRVLLEF----GADPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH--HHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            458899999999999999999999998999999999999  999999999999997    99999999999999999999


Q ss_pred             cCCHHHHHHHHHh
Q 041785          107 YSHFDIVRVLIER  119 (181)
Q Consensus       107 ~~~~~~~~~L~~~  119 (181)
                      .++.+++++|+++
T Consensus       158 ~g~~~iv~~Ll~~  170 (664)
T PTZ00322        158 NGFREVVQLLSRH  170 (664)
T ss_pred             CCcHHHHHHHHhC
Confidence            9999999999998

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.56  E-value=3.4e-14  Score=114.61  Aligned_cols=86  Identities=27%  Similarity=0.322  Sum_probs=81.8

Q ss_pred             hhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHH
Q 041785           61 ILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQM  140 (181)
Q Consensus        61 ~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  140 (181)
                      .|+.|  +..|+.+.++.|+..    +++++.+|..|+||||+|+..|+.+++++|++.|+++                 
T Consensus        85 ~L~~a--a~~G~~~~vk~LL~~----Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-----------------  141 (664)
T PTZ00322         85 ELCQL--AASGDAVGARILLTG----GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-----------------  141 (664)
T ss_pred             HHHHH--HHcCCHHHHHHHHHC----CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-----------------
Confidence            37788  899999999999986    9999999999999999999999999999999999998                 


Q ss_pred             hhcccCCCchHHHHHHHcCCHHHHHHHHHc
Q 041785          141 IRMVNNEKNTALHEAVSHGNVEVVKILTRE  170 (181)
Q Consensus       141 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  170 (181)
                       +.+|..|.||||+|+..|+.+++++|+++
T Consensus       142 -n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        142 -TLLDKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             -CCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence             89999999999999999999999999998

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=8.8e-14  Score=98.12  Aligned_cols=120  Identities=20%  Similarity=0.175  Sum_probs=109.0

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccc-cCCCcHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVN-AKGDTPLH  102 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~  102 (181)
                      .-.++|..++..++.+....||+.--+.+..|.+|.++|..|  +..|+.+.++.+++.    |+++|... ..+.||||
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahA--aykGnl~~v~lll~~----gaDvN~~qhg~~YTpLm   84 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHA--AYKGNLTLVELLLEL----GADVNDKQHGTLYTPLM   84 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHH--HhcCcHHHHHHHHHh----CCCcCcccccccccHHH
Confidence            346789999999999999999986555778999999999999  999999999999998    99998864 67899999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHH
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL  167 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  167 (181)
                      .|+.+|+.++.+.|++.|+.+                  ...|.-|+|+-..|+..|+.++|..+
T Consensus        85 FAALSGn~dvcrllldaGa~~------------------~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGARM------------------YLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             HHHHcCCchHHHHHHhccCcc------------------ccccchhhhHHHHHHHhcchHHHHHH
Confidence            999999999999999999988                  78889999999999999999998876

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=2.7e-14  Score=107.94  Aligned_cols=119  Identities=23%  Similarity=0.237  Sum_probs=99.4

Q ss_pred             HHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHc
Q 041785           28 NLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKY  107 (181)
Q Consensus        28 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~  107 (181)
                      .|..|+..|-++.|+..+.+--++...+..|-|+||.|  +..||.++|++|+.+    |+++|..|.+||||||.|+..
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNA--iCaghyeIVkFLi~~----ganVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNA--ICAGHYEIVKFLIEF----GANVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhh--hhcchhHHHHHHHhc----CCcccCccCCCCchhhhhhhc
Confidence            36678899999999999987666667788999999999  999999999999998    999999999999999999999


Q ss_pred             CCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHH--HcCCHHHHHHHHH
Q 041785          108 SHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV--SHGNVEVVKILTR  169 (181)
Q Consensus       108 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~--~~~~~~~~~~Ll~  169 (181)
                      ++..+++.|++.|+.+++                 ..-.++.|+..-.-  +.|...|.+||..
T Consensus       627 Nnv~~ckqLVe~GaavfA-----------------sTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAVFA-----------------STLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             CchHHHHHHHhccceEEe-----------------eecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999999988722                 22345666654432  3566778888753

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.53  E-value=9.5e-15  Score=80.59  Aligned_cols=50  Identities=34%  Similarity=0.528  Sum_probs=27.4

Q ss_pred             ccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHH
Q 041785           88 ALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA  155 (181)
Q Consensus        88 ~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  155 (181)
                      .+++.+|..|.||||+|+..|+.+++++|++.++++                  +.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~------------------~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP------------------NAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T------------------T---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC------------------CCCcCCCCCHHHhC
Confidence            677777888888888888888888888888777777                  77888888888876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.53  E-value=8.2e-15  Score=118.88  Aligned_cols=134  Identities=16%  Similarity=0.108  Sum_probs=113.7

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccccccc-ccCCC
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQV-NAKGD   98 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~   98 (181)
                      ......+|+|-.||..|+.+.+..|+.+|+++--+|..|.+||-+|  +..||..+++.|+..    .++++.+ |+.+.
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plIma--atagh~tvV~~llk~----ha~veaQsdrtkd  825 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMA--ATAGHITVVQDLLKA----HADVEAQSDRTKD  825 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhh--cccCchHHHHHHHhh----hhhhhhhcccccC
Confidence            3344678999999999999999999999999888899999999999  999999999999997    7777765 67899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                      |+|.+||..|+.++++.|+..|++.                  ..++...+|||.+|..-|..++++.|++.|++++.+
T Consensus       826 t~lSlacsggr~~vvelLl~~gank------------------ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  826 TMLSLACSGGRTRVVELLLNAGANK------------------EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             ceEEEecCCCcchHHHHHHHhhccc------------------cccchhhcCchhhhcCcchHHHHHHHhhcccccccc
Confidence            9999999999999999999999887                  556666677777777777777777777777666554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.52  E-value=3.6e-14  Score=77.78  Aligned_cols=54  Identities=33%  Similarity=0.401  Sum_probs=32.0

Q ss_pred             CCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 041785           58 KNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLI  117 (181)
Q Consensus        58 g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~  117 (181)
                      |.||||+|  +..|+.+++++|++.    +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A--~~~g~~~~~~~Ll~~----~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWA--ARSGNLEIVKLLLEH----GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHH--HHTT-HHHHHHHHHT----TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHH--HHhCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666  666666666666664    6666666666666777666666666666664

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=2.5e-14  Score=78.91  Aligned_cols=55  Identities=20%  Similarity=0.178  Sum_probs=31.2

Q ss_pred             HHHHh-cccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHH
Q 041785           44 MAREV-IESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLA  104 (181)
Q Consensus        44 ll~~~-~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a  104 (181)
                      |++.+ .+.+.+|..|.||||+|  +..|+.+++++|++.    +++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A--~~~g~~~~v~~Ll~~----g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWA--ARYGHSEVVRLLLQN----GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHH--HHHT-HHHHHHHHHC----T--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHH--HHcCcHHHHHHHHHC----cCCCCCCcCCCCCHHHhC
Confidence            45666 66778899999999999  999999999999965    999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.46  E-value=7.6e-13  Score=93.08  Aligned_cols=103  Identities=24%  Similarity=0.320  Sum_probs=92.8

Q ss_pred             cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCC-----HHHHHHHHHhhh--hccC
Q 041785           53 LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSH-----FDIVRVLIERAQ--LAQH  125 (181)
Q Consensus        53 ~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~-----~~~~~~L~~~~~--~~~~  125 (181)
                      ..+..+.+++|.+  +..+...++..++..    +.+++.++..|.||||+|+..++     .++++.|++.|+  ..  
T Consensus        68 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~--  139 (235)
T COG0666          68 ARDLDGRLPLHSA--ASKGDDKIVKLLLAS----GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV--  139 (235)
T ss_pred             cCCccccCHHHHH--HHcCcHHHHHHHHHc----CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC--
Confidence            3456689999999  999999999888886    88999999999999999999999     999999999999  33  


Q ss_pred             CCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          126 GDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                                     .+.+|..|+||||+|+..|+.+++++|++.|++++.++
T Consensus       140 ---------------~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~  177 (235)
T COG0666         140 ---------------NNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRN  177 (235)
T ss_pred             ---------------ccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccc
Confidence                           26779999999999999999999999999999988764

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=4.1e-13  Score=101.67  Aligned_cols=96  Identities=26%  Similarity=0.205  Sum_probs=82.3

Q ss_pred             CCCchhHHHH-hhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHH
Q 041785           57 TKNTILHINI-ICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE  135 (181)
Q Consensus        57 ~g~t~Lh~a~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~  135 (181)
                      ....||.+.. -+..|..+.|+.++..    -.+....+..|-|+||-|+-.|+.+||++|++.|+++            
T Consensus       546 vrfnPLaLLLDaaLeGEldlVq~~i~e----v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV------------  609 (752)
T KOG0515|consen  546 VRFNPLALLLDAALEGELDLVQRIIYE----VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV------------  609 (752)
T ss_pred             eecchHHHHHhhhhcchHHHHHHHHHh----hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc------------
Confidence            3445554321 0578889999888876    4566778889999999999999999999999999999            


Q ss_pred             HHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785          136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus       136 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                            |..|.+||||||+|+.-++..+++.|++.|+-+
T Consensus       610 ------Na~DSdGWTPLHCAASCNnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  610 ------NAADSDGWTPLHCAASCNNVPMCKQLVESGAAV  642 (752)
T ss_pred             ------cCccCCCCchhhhhhhcCchHHHHHHHhccceE
Confidence                  999999999999999999999999999999865

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.26  E-value=7.8e-12  Score=102.12  Aligned_cols=135  Identities=19%  Similarity=0.179  Sum_probs=111.1

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccc-cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCC
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESS-LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGD   98 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~-~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (181)
                      -.+..|.+||.+|+..|+...|+.|+...+++. ..|..+.|+|.+|  |..|..++++.|+..    ++.-..++-...
T Consensus       785 hrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla--csggr~~vvelLl~~----gankehrnvsDy  858 (2131)
T KOG4369|consen  785 HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA--CSGGRTRVVELLLNA----GANKEHRNVSDY  858 (2131)
T ss_pred             ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe--cCCCcchHHHHHHHh----hccccccchhhc
Confidence            345568899999999999999999999887776 5788999999999  999999999999998    777778888889


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPY  176 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  176 (181)
                      |||.+|...|..++++.|+..|..+..                ..-.+.|-.||.+|..+|+....+.|++.|.|+|.
T Consensus       859 tPlsla~Sggy~~iI~~llS~GseInS----------------rtgSklgisPLmlatmngh~~at~~ll~~gsdiNa  920 (2131)
T KOG4369|consen  859 TPLSLARSGGYTKIIHALLSSGSEINS----------------RTGSKLGISPLMLATMNGHQAATLSLLQPGSDINA  920 (2131)
T ss_pred             CchhhhcCcchHHHHHHHhhccccccc----------------ccccccCcchhhhhhhccccHHHHHHhcccchhcc
Confidence            999999999999999999999977611                12245666777777777777777777777766653

>PF13606 Ank_3: Ankyrin repeat

Probab=99.16  E-value=5.8e-11  Score=56.47  Aligned_cols=30  Identities=43%  Similarity=0.556  Sum_probs=28.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 041785          147 EKNTALHEAVSHGNVEVVKILTREDPDYPY  176 (181)
Q Consensus       147 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  176 (181)
                      +|+||||+|++.|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.15  E-value=1e-10  Score=57.11  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          147 EKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       147 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      .|.||||+|+..|+.+++++|+++|++++.++|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            489999999999999999999999999998875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.14  E-value=5e-11  Score=89.42  Aligned_cols=93  Identities=18%  Similarity=0.173  Sum_probs=62.2

Q ss_pred             CCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHH
Q 041785           57 TKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA  136 (181)
Q Consensus        57 ~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  136 (181)
                      .+...+.+|  ++.|+...++.+...    +.+++.+|++.+|+||+|+..|+.+++++|++.....             
T Consensus       505 ~~~i~~~~a--a~~GD~~alrRf~l~----g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~-------------  565 (622)
T KOG0506|consen  505 DTVINVMYA--AKNGDLSALRRFALQ----GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD-------------  565 (622)
T ss_pred             cchhhhhhh--hhcCCHHHHHHHHHh----cccccccccccchhheeecccCceeHHHHHHHHHcCC-------------
Confidence            344556667  777777777666554    6777777777777777777777777777777654322             


Q ss_pred             HHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCC
Q 041785          137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDP  172 (181)
Q Consensus       137 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~  172 (181)
                          .+.+|.+|+|||.-|...++.+++++|-+..-
T Consensus       566 ----~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  566 ----PDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             ----CChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence                25667777777777777777777777765443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.13  E-value=1e-10  Score=87.83  Aligned_cols=91  Identities=23%  Similarity=0.306  Sum_probs=85.2

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHH
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLA  104 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a  104 (181)
                      ..-.+++|+..|++..++.+.-.|.+...+|++.+|+||.|  +..|+++++++|++.   ++.+.+.+|.+|+|||.-|
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvA--AaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVA--AAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheee--cccCceeHHHHHHHH---HcCCCChhhccCCCcchHh
Confidence            44679999999999999999999999999999999999999  999999999999998   5889999999999999999


Q ss_pred             HHcCCHHHHHHHHHhh
Q 041785          105 AKYSHFDIVRVLIERA  120 (181)
Q Consensus       105 ~~~~~~~~~~~L~~~~  120 (181)
                      ...++.+++++|-+.-
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            9999999999998864

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.09  E-value=4.9e-10  Score=79.49  Aligned_cols=93  Identities=17%  Similarity=0.127  Sum_probs=84.0

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccc-cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCC
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESS-LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGD   98 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~-~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (181)
                      ..++.|-|+|.-|+..|+.+.++.+++.|++.+ -+...+.||||.|  +.+|+.++++.|++.    |+.....+.-|+
T Consensus        40 ~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA--ALSGn~dvcrlllda----Ga~~~~vNsvgr  113 (396)
T KOG1710|consen   40 QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA--ALSGNQDVCRLLLDA----GARMYLVNSVGR  113 (396)
T ss_pred             ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH--HHcCCchHHHHHHhc----cCccccccchhh
Confidence            345678999999999999999999999999998 4677899999999  999999999999997    998999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHH
Q 041785           99 TPLHLAAKYSHFDIVRVLIE  118 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~  118 (181)
                      |+-..|+.-|+.+|+..+=.
T Consensus       114 TAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  114 TAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             hHHHHHHHhcchHHHHHHhc
Confidence            99999999999999876543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.04  E-value=1.1e-09  Score=82.82  Aligned_cols=88  Identities=17%  Similarity=0.205  Sum_probs=79.2

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhccccccc-CCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIESSLTV-HTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAA  105 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~  105 (181)
                      .-||-.++.|+.++.-.|+..|++.+..+ ..|.||||.|  ++.|+...++.|.-+    |++++..|..|.||+.+|-
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvA--Ak~Gq~~Q~ElL~vY----GAD~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVA--AKAGQILQAELLAVY----GADPGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHH--HhccchhhhhHHhhc----cCCCCCCCCCCCcHHHHHH
Confidence            45999999999999999999999998654 4599999999  999999999999886    9999999999999999999


Q ss_pred             HcCCHHHHHHHHHhh
Q 041785          106 KYSHFDIVRVLIERA  120 (181)
Q Consensus       106 ~~~~~~~~~~L~~~~  120 (181)
                      ..|+.++.+.|++.-
T Consensus       209 ~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  209 QGGHHELAERLVEIQ  223 (669)
T ss_pred             hcCchHHHHHHHHHH
Confidence            999988877777653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.00  E-value=6.3e-10  Score=88.83  Aligned_cols=99  Identities=18%  Similarity=0.257  Sum_probs=82.9

Q ss_pred             CCcHHHHHHHHH-hcc-cccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccccccccc-CCCcHHHHHHHcCCHHH
Q 041785           36 GSVEPFKDMARE-VIE-SSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNA-KGDTPLHLAAKYSHFDI  112 (181)
Q Consensus        36 g~~~~~~~ll~~-~~~-~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~  112 (181)
                      +-..-++-++.. +.+ .+++|.-|+++||++  +..+...++++|+++    |+++..+|+ .|+||||-|+..|+.+|
T Consensus        28 s~~Nqlk~F~~k~c~n~anikD~~GR~alH~~--~S~~k~~~l~wLlqh----Gidv~vqD~ESG~taLHRaiyyG~idc  101 (1267)
T KOG0783|consen   28 SEPNQLKGFSEKSCQNLANIKDRYGRTALHIA--VSENKNSFLRWLLQH----GIDVFVQDEESGYTALHRAIYYGNIDC  101 (1267)
T ss_pred             CChhHHHHHHHHhhhhhhhHHHhhccceeeee--eccchhHHHHHHHhc----CceeeeccccccchHhhHhhhhchHHH
Confidence            344345656652 212 346899999999999  999999999999998    999999995 79999999999999999


Q ss_pred             HHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHc
Q 041785          113 VRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSH  158 (181)
Q Consensus       113 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  158 (181)
                      +-.|+..|..+                  .++|+.|..||..-++.
T Consensus       102 a~lLL~~g~SL------------------~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  102 ASLLLSKGRSL------------------RIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             HHHHHhcCCce------------------EEecccCCCHHHHHhhc
Confidence            99999999887                  88999999999987773

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.94  E-value=4.2e-09  Score=79.70  Aligned_cols=93  Identities=20%  Similarity=0.152  Sum_probs=80.6

Q ss_pred             cccCCCCch------hHHHHhhhhhhhhHHHHHHHHHhhccccccccc-cCCCcHHHHHHHcCCHHHHHHHHHhhhhccC
Q 041785           53 LTVHTKNTI------LHINIICQETENASTKFVEEILEICPALLLQVN-AKGDTPLHLAAKYSHFDIVRVLIERAQLAQH  125 (181)
Q Consensus        53 ~~~~~g~t~------Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~  125 (181)
                      .+|.+|.+.      ||..  ++.+..+.+-.|+..    |++.|..+ ..|.||||+|++.|+.-.+++|+-.|+++  
T Consensus       122 ~rDdD~~~~~~LsrQLhas--vRt~nlet~LRll~l----GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~--  193 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSS--VRTGNLETCLRLLSL----GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP--  193 (669)
T ss_pred             CCCcchhhHHHHHHHHHHH--hhcccHHHHHHHHHc----ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC--
Confidence            456666554      7888  899998888888887    99988876 57999999999999999999999999998  


Q ss_pred             CCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHH
Q 041785          126 GDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR  169 (181)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  169 (181)
                                      ...|..|.||+.+|-..|+.++.+.|++
T Consensus       194 ----------------~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  194 ----------------GAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             ----------------CCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence                            8999999999999999999888777654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.93  E-value=4.4e-09  Score=80.15  Aligned_cols=85  Identities=15%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             HHHHHHHcCCcHHHHHHHHH--hcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHH
Q 041785           28 NLFKAAADGSVEPFKDMARE--VIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAA  105 (181)
Q Consensus        28 ~l~~a~~~g~~~~~~~ll~~--~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~  105 (181)
                      |+|+++...+.+.+...+..  +..++..|..|.||||+|  ++.|+...++.|+..    ++++..++..||+|||-|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlA--V~Lg~~~~a~~Ll~a----~Adv~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLA--VRLGHVEAARILLSA----GADVSIKNNEGWSPLHEAV   96 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHH--HHhcCHHHHHHHHhc----CCCccccccccccHHHHHH
Confidence            35555555555555543332  223334555556666666  555565555555554    5555555666666666666


Q ss_pred             HcCCHHHHHHHHH
Q 041785          106 KYSHFDIVRVLIE  118 (181)
Q Consensus       106 ~~~~~~~~~~L~~  118 (181)
                      ..|+..++.-++.
T Consensus        97 ~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   97 STGNEQIITEVLR  109 (560)
T ss_pred             HcCCHHHHHHHHH
Confidence            6665555444443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.90  E-value=6.5e-09  Score=80.11  Aligned_cols=124  Identities=15%  Similarity=0.209  Sum_probs=106.8

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAK  106 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~  106 (181)
                      .-+..|+..+++-.++..-..|.+...++.+..+.||+|  +..|+-+++++++.+..  +..+++.+..|.|+||-|+-
T Consensus       868 eeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a--~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYA--AKTGNGEIVKYILDHGP--SELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHH--HhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHH
Confidence            346777888887777776667777777888999999999  99999999999999721  24677788999999999999


Q ss_pred             cCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCC
Q 041785          107 YSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDP  172 (181)
Q Consensus       107 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~  172 (181)
                      .++..+..+|++.|+.+                  ...|..|.||-.-|-..|+.+++.||-++.-
T Consensus       944 ~~~r~vc~~lvdagasl------------------~ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASL------------------RKTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             hcchHHHHHHHhcchhh------------------eecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            99999999999999987                  7789999999999999999999999987643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.84  E-value=4.2e-09  Score=49.98  Aligned_cols=28  Identities=43%  Similarity=0.701  Sum_probs=25.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhc
Q 041785           96 KGDTPLHLAAKYSHFDIVRVLIERAQLA  123 (181)
Q Consensus        96 ~g~t~L~~a~~~~~~~~~~~L~~~~~~~  123 (181)
                      +|+||||+|++.|+.+++++|++.|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4899999999999999999999998876

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.83  E-value=3.4e-08  Score=79.26  Aligned_cols=133  Identities=14%  Similarity=0.083  Sum_probs=104.3

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHh----cccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREV----IESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~----~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .+.-.+..|++.|+.-.|+..++..    .+.++.|..|.++|+.|  ..+.+.++.++|++.    +...       ..
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~ia--i~nenle~~eLLl~~----~~~~-------gd   90 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIA--IDNENLELQELLLDT----SSEE-------GD   90 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecc--cccccHHHHHHHhcC----cccc-------ch
Confidence            3445688999999999999999843    55668899999999999  999999999999885    4322       35


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCC--CCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHG--DEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                      +|.+|+..|..++++.++.+-......  ..+.          ....-..+-||+.+|+..++++|+++|+.+|+.+...
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~----------~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDA----------NSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhcccccc----------CcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            888999999999999999874332100  0000          0123456789999999999999999999999999887


Q ss_pred             cC
Q 041785          178 AN  179 (181)
Q Consensus       178 ~~  179 (181)
                      ++
T Consensus       161 H~  162 (822)
T KOG3609|consen  161 HD  162 (822)
T ss_pred             cc
Confidence            65

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.82  E-value=1.2e-08  Score=78.56  Aligned_cols=90  Identities=14%  Similarity=0.129  Sum_probs=78.9

Q ss_pred             HHHHHHHcCCcHHHHHHHHHhcccc----cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHH
Q 041785           28 NLFKAAADGSVEPFKDMAREVIESS----LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        28 ~l~~a~~~g~~~~~~~ll~~~~~~~----~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (181)
                      -|.-|+...++.++-.||.+|...-    ..+.+|.|+||+|  |+.|++.+.++|+.+    ++++-.+|.+|+|+|.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa--~~~gnVvl~QLLiWy----g~dv~~rda~g~t~l~y  700 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLA--ARKGNVVLAQLLIWY----GVDVMARDAHGRTALFY  700 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhh--hhhcchhHHHHHHHh----CccceecccCCchhhhh
Confidence            4777888889999999998774332    4566789999999  999999999999986    99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhc
Q 041785          104 AAKYSHFDIVRVLIERAQLA  123 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~  123 (181)
                      |-+.|..+|+.+|+.+|...
T Consensus       701 ar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  701 ARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             HhhcccHHHHHHHHHcCCCc
Confidence            99999999999999998754

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.78  E-value=1.1e-08  Score=49.79  Aligned_cols=28  Identities=43%  Similarity=0.681  Sum_probs=26.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhc
Q 041785           96 KGDTPLHLAAKYSHFDIVRVLIERAQLA  123 (181)
Q Consensus        96 ~g~t~L~~a~~~~~~~~~~~L~~~~~~~  123 (181)
                      +|.||||+|+..++.+++++|++.|+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            4889999999999999999999999987

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.76  E-value=3.1e-08  Score=75.64  Aligned_cols=63  Identities=16%  Similarity=0.060  Sum_probs=56.2

Q ss_pred             hhcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHH
Q 041785           19 EIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEIL   83 (181)
Q Consensus        19 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~   83 (181)
                      ...+..|.||||.|+.-|+...++.|+..|++...++..|++|||.|  +..|+.+++..++...
T Consensus        49 d~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EA--v~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   49 DRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEA--VSTGNEQIITEVLRHL  111 (560)
T ss_pred             ccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHH--HHcCCHHHHHHHHHHh
Confidence            34456679999999999999999999999999888999999999999  9999999888887763

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.73  E-value=8e-09  Score=82.73  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=75.6

Q ss_pred             hhhcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccC-CCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccC
Q 041785           18 GEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVH-TKNTILHINIICQETENASTKFVEEILEICPALLLQVNAK   96 (181)
Q Consensus        18 ~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   96 (181)
                      .+..+.-|+++||+++..+..+++++|+++|++...+|+ .|.||||-|  ..+|+++++-.|+.+    |..+.++|+.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRa--iyyG~idca~lLL~~----g~SL~i~Dke  118 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRA--IYYGNIDCASLLLSK----GRSLRIKDKE  118 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHh--hhhchHHHHHHHHhc----CCceEEeccc
Confidence            456677899999999999999999999999999987775 499999999  999999999999997    9999999999


Q ss_pred             CCcHHHHHHH
Q 041785           97 GDTPLHLAAK  106 (181)
Q Consensus        97 g~t~L~~a~~  106 (181)
                      |..||..-++
T Consensus       119 glsplq~~~r  128 (1267)
T KOG0783|consen  119 GLSPLQFLSR  128 (1267)
T ss_pred             CCCHHHHHhh
Confidence            9999987665

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.66  E-value=9.9e-08  Score=73.71  Aligned_cols=87  Identities=18%  Similarity=0.131  Sum_probs=67.9

Q ss_pred             hhhhhhHHHHHHHHHhhccccccc--cccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccC
Q 041785           69 QETENASTKFVEEILEICPALLLQ--VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNN  146 (181)
Q Consensus        69 ~~~~~~~~~~l~~~~~~~~~~~~~--~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (181)
                      ...+...+-.|+.+.-  ...++.  -+.+|.|+||+|++.|+..+..+|+=+|.++                  ..+|.
T Consensus       633 ~~~Dl~t~~lLLAhg~--~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv------------------~~rda  692 (749)
T KOG0705|consen  633 AAEDLQTAILLLAHGS--REEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV------------------MARDA  692 (749)
T ss_pred             HHHHHHHHHHHHhccC--chhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc------------------eeccc
Confidence            3444455555555411  112222  2457899999999999999999999889888                  78999


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 041785          147 EKNTALHEAVSHGNVEVVKILTREDPDYP  175 (181)
Q Consensus       147 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  175 (181)
                      .|+|+|.||-..|..+|+.+|+.+|+.-.
T Consensus       693 ~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  693 HGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             CCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            99999999999999999999999998643

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.60  E-value=4.2e-08  Score=80.26  Aligned_cols=130  Identities=15%  Similarity=-0.040  Sum_probs=100.9

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ...+.+.+|.++..+..+.++.+++. +......+..|...+|.+  + .++.++.-.+...   .+..++++|..||||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc--a-~lg~ewA~ll~~~---~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC--A-ALGYEWAFLPISA---DGVAIDIRDRNGWTP  644 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh--h-hcCCceeEEEEee---cccccccccCCCCcc
Confidence            44577899999999999999999985 655556788999999995  4 4455555544443   488999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR  169 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  169 (181)
                      ||+|+..|+..++..|++.|+...+...            .......|.|+-..|...|+..+.-+|-+
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~td------------ps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTD------------PSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccC------------CCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            9999999999999999998876521111            12335678899999999998887777644

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.58  E-value=1.4e-07  Score=73.04  Aligned_cols=92  Identities=23%  Similarity=0.188  Sum_probs=81.9

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccc--cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESS--LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~--~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .++..+.||+|+..|+-++|+++|++|+...  +.+..|.|+||.|  +..++..++++|++.    |+.+...|..|.|
T Consensus       896 ~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhka--a~~~~r~vc~~lvda----gasl~ktd~kg~t  969 (1004)
T KOG0782|consen  896 GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKA--ACQRNRAVCQLLVDA----GASLRKTDSKGKT  969 (1004)
T ss_pred             CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHH--HHhcchHHHHHHHhc----chhheecccCCCC
Confidence            3455789999999999999999999886553  5678999999999  888888899999987    9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHh
Q 041785          100 PLHLAAKYSHFDIVRVLIER  119 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~  119 (181)
                      |-.-|-+.|..+...+|-.+
T Consensus       970 p~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  970 PQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHhcCCchHHHHHhhh
Confidence            99999999999999998775

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.52  E-value=3.6e-07  Score=61.33  Aligned_cols=65  Identities=22%  Similarity=0.139  Sum_probs=36.2

Q ss_pred             ccccccccCCCcHHHHHHHcCCHHHHHHHHHhh-hhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHH
Q 041785           88 ALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERA-QLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKI  166 (181)
Q Consensus        88 ~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  166 (181)
                      .++|.+|..||||++.|+..|+.+.+.||+.+| +.+                  .+.|..|.+++.+|-+.|..++++.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v------------------gv~d~ssldaaqlaek~g~~~fvh~   64 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV------------------GVTDESSLDAAQLAEKGGAQAFVHS   64 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccc------------------cccccccchHHHHHHhcChHHHHHH
Confidence            345555555555555555555555555555555 333                  4555555555555555555555555


Q ss_pred             HHHc
Q 041785          167 LTRE  170 (181)
Q Consensus       167 Ll~~  170 (181)
                      |.+.
T Consensus        65 lfe~   68 (223)
T KOG2384|consen   65 LFEN   68 (223)
T ss_pred             HHHH
Confidence            5544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.28  E-value=7.5e-07  Score=73.00  Aligned_cols=90  Identities=21%  Similarity=0.336  Sum_probs=80.2

Q ss_pred             cCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchH
Q 041785           55 VHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGI  134 (181)
Q Consensus        55 ~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  134 (181)
                      -..|.++||.|  +..+....+++|++.    +++++..+..|++|+|.+...|+...+..++++|++.           
T Consensus       653 ~~~~~s~lh~a--~~~~~~~~~e~ll~~----ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-----------  715 (785)
T KOG0521|consen  653 LCIGCSLLHVA--VGTGDSGAVELLLQN----GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-----------  715 (785)
T ss_pred             hhcccchhhhh--hccchHHHHHHHHhc----CCcchhhhccCCCcchhhhhhcccchhhhhccccccc-----------
Confidence            35679999999  999999999999997    9999999999999999999999999999999999998           


Q ss_pred             HHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHH
Q 041785          135 EAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT  168 (181)
Q Consensus       135 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  168 (181)
                             ++.+..|.+|+++|....+.+.+-++.
T Consensus       716 -------~a~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  716 -------NAFDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             -------cccCccCcchhhHHhhhccccHHHHHh
Confidence                   888999999999998876666555543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.26  E-value=2.2e-06  Score=63.44  Aligned_cols=60  Identities=25%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 041785           98 DTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP  175 (181)
Q Consensus        98 ~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  175 (181)
                      ..-|..||+.|..+.+++|++.|.++                  |.+|.+..+||.+|+--||.+++++|+++||-+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV------------------N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV------------------NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc------------------chhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            45677899999999999999999988                  9999999999999999999999999999998653

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.15  E-value=2.2e-05  Score=58.36  Aligned_cols=69  Identities=14%  Similarity=0.116  Sum_probs=58.0

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      --|+.||+.|+.+.+++|++.|.+.+..|.....||.+|  +--||.+++++|++.    |+....-...|...+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lA--sLcGHe~vvklLLen----GAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLA--SLCGHEDVVKLLLEN----GAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHH--HHcCcHHHHHHHHHc----CCcccccccCcchhh
Confidence            348899999999999999999999998899999999999  889999999999997    776666556666553

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.98  E-value=1.6e-05  Score=53.62  Aligned_cols=67  Identities=16%  Similarity=0.046  Sum_probs=48.0

Q ss_pred             cccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcc-ccccccccCCCcHHHHHHHcCCHHHHHHHHHhhh
Q 041785           49 IESSLTVHTKNTILHINIICQETENASTKFVEEILEICP-ALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQ  121 (181)
Q Consensus        49 ~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~  121 (181)
                      .+++++|.-|+|+++.|  +..|..+.+.+|+..    | +.+...+..|.+++.+|-+.|..++++.|.+...
T Consensus         3 ~~in~rD~fgWTalmca--a~eg~~eavsyllgr----g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCA--AMEGSNEAVSYLLGR----GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCccchhhhcchHHHHH--hhhcchhHHHHHhcc----CcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            34556777777777777  777777777777775    5 6666777777777777777777777777776643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.97  E-value=7e-06  Score=67.46  Aligned_cols=88  Identities=16%  Similarity=0.088  Sum_probs=78.2

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.|+||.|+..|+.-.+..|++.|.+.+..+..|.+|+|.+  ...|+......+++.    +++.+..+..|.+|+
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~--~~~g~~~~~~~ll~~----~a~~~a~~~~~~~~l  726 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHA--TASGHTSIACLLLKR----GADPNAFDPDGKLPL  726 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhh--hhhcccchhhhhccc----cccccccCccCcchh
Confidence            34568999999999999999999999999999999999999999  999999999888886    899999999999999


Q ss_pred             HHHHHcCCHHHHHH
Q 041785          102 HLAAKYSHFDIVRV  115 (181)
Q Consensus       102 ~~a~~~~~~~~~~~  115 (181)
                      ++|....+.+.+-+
T Consensus       727 ~~a~~~~~~d~~~l  740 (785)
T KOG0521|consen  727 DIAMEAANADIVLL  740 (785)
T ss_pred             hHHhhhccccHHHH
Confidence            99987766555433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.96  E-value=4.4e-06  Score=68.82  Aligned_cols=97  Identities=18%  Similarity=0.117  Sum_probs=65.6

Q ss_pred             cCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHh-hhhccCCCCCCcch
Q 041785           55 VHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER-AQLAQHGDEEPESG  133 (181)
Q Consensus        55 ~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~  133 (181)
                      ...|.+.+|++  +..+..-.++.+++.   .+......+..|...+|. |..++.+++-+++.. |..           
T Consensus       571 ~~r~~lllhL~--a~~lyawLie~~~e~---~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~a-----------  633 (975)
T KOG0520|consen  571 NFRDMLLLHLL--AELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVA-----------  633 (975)
T ss_pred             CCcchHHHHHH--HHHhHHHHHHHHhcc---cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccc-----------
Confidence            45577778887  666666666665553   133334445666666766 444444444333332 223           


Q ss_pred             HHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 041785          134 IEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP  175 (181)
Q Consensus       134 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  175 (181)
                             ++.+|..||||||||+..|+..++..|++.|++-.
T Consensus       634 -------i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  634 -------IDIRDRNGWTPLHWAAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             -------cccccCCCCcccchHhhcCHHHHHHHHHHhccccc
Confidence                   48999999999999999999999999998887754

>smart00248 ANK ankyrin repeats

Probab=97.80  E-value=5.7e-05  Score=34.39  Aligned_cols=29  Identities=41%  Similarity=0.593  Sum_probs=26.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 041785          147 EKNTALHEAVSHGNVEVVKILTREDPDYP  175 (181)
Q Consensus       147 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  175 (181)
                      .|.||+|+|+..++.++++.|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999998764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.43  E-value=0.00023  Score=58.02  Aligned_cols=100  Identities=16%  Similarity=0.091  Sum_probs=73.8

Q ss_pred             chhhcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccc-----ccc
Q 041785           17 TGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPA-----LLL   91 (181)
Q Consensus        17 ~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~-----~~~   91 (181)
                      +.+-.+.-|.++|+.|+.+.+.++.+.|++.....      |. +|-+|  ...+..++++.++.+-...+.     +.+
T Consensus        54 ninc~d~lGr~al~iai~nenle~~eLLl~~~~~~------gd-ALL~a--I~~~~v~~VE~ll~~~~~~~~~~~~~d~~  124 (822)
T KOG3609|consen   54 NINCRDPLGRLALHIAIDNENLELQELLLDTSSEE------GD-ALLLA--IAVGSVPLVELLLVHFVDAPYLERSGDAN  124 (822)
T ss_pred             chhccChHhhhceecccccccHHHHHHHhcCcccc------ch-HHHHH--HHHHHHHHHHHHHhcccccchhccccccC
Confidence            33444566899999999999999999999865532      44 45556  888999999999887211100     000


Q ss_pred             -ccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccC
Q 041785           92 -QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQH  125 (181)
Q Consensus        92 -~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~  125 (181)
                       ..-..+-||+.+||..++.+|+++|+++|+.+..
T Consensus       125 ~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  125 SPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             cccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence             1113467999999999999999999999987743

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.20  E-value=0.00073  Score=52.14  Aligned_cols=45  Identities=18%  Similarity=0.099  Sum_probs=39.9

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHH
Q 041785           94 NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV  156 (181)
Q Consensus        94 ~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  156 (181)
                      +....|+||+|+..|..+++.+|++.|+++                  ..+|..|.||+.++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp------------------~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDP------------------STKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCc------------------hhcccCCCCcccccc
Confidence            455789999999999999999999999888                  788999999998876

>smart00248 ANK ankyrin repeats

Probab=97.11  E-value=0.00094  Score=30.02  Aligned_cols=28  Identities=36%  Similarity=0.720  Sum_probs=22.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhc
Q 041785           96 KGDTPLHLAAKYSHFDIVRVLIERAQLA  123 (181)
Q Consensus        96 ~g~t~L~~a~~~~~~~~~~~L~~~~~~~  123 (181)
                      .|.||+|+|+..++.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3678888888888888888888876543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.65  E-value=0.0046  Score=47.92  Aligned_cols=62  Identities=16%  Similarity=0.225  Sum_probs=48.3

Q ss_pred             cHHHHHHHHHhcccc------cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHH
Q 041785           38 VEPFKDMAREVIESS------LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAA  105 (181)
Q Consensus        38 ~~~~~~ll~~~~~~~------~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~  105 (181)
                      ...+.+|.+.++..+      ..+..-.|+||+|  +..|..+++.+|++.    +++...+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~a--a~qg~~k~v~~~Lee----g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYA--AAQGARKCVKYFLEE----GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHH--HhcchHHHHHHHHHh----cCCchhcccCCCCcccccc
Confidence            556677777665554      3345577889999  899999999888887    7888888999999988877

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.85  E-value=0.092  Score=37.01  Aligned_cols=141  Identities=11%  Similarity=0.123  Sum_probs=83.6

Q ss_pred             ccCCCCCCchhhcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccc
Q 041785            9 KEAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPA   88 (181)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~   88 (181)
                      +-+.++....-.+.+-..-.|-.|+...+.+.+..++...-       .-.+++-++  ...+..+++.+|+....-...
T Consensus       137 HiPRm~sT~~f~kv~lr~isledAV~AsN~~~i~~~VtdKk-------dA~~Am~~s--i~~~K~dva~~lls~f~ft~~  207 (284)
T PF06128_consen  137 HIPRMVSTDNFKKVKLRDISLEDAVKASNYEEISNLVTDKK-------DAHQAMWLS--IGNAKEDVALYLLSKFNFTKQ  207 (284)
T ss_pred             ccchhccccchhhcccccccHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHH--hcccHHHHHHHHHhhcceecc
Confidence            33344333333333334444677887778877777665211       224567777  777788888888775321111


Q ss_pred             cccccccCCCcHHHHH--HHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHH
Q 041785           89 LLLQVNAKGDTPLHLA--AKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKI  166 (181)
Q Consensus        89 ~~~~~~~~g~t~L~~a--~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  166 (181)
                      ++-.. ..+.--+.++  ....+..++++++++|-.--- .             .-.+-..|.|.|.-|++.++.+++.+
T Consensus       208 dv~~~-~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN-~-------------~F~~~NSGdtMLDNA~Ky~~~emi~~  272 (284)
T PF06128_consen  208 DVASM-EKELYDIEYLLSEHSASYKVLEYFINRGLVDVN-K-------------KFQKVNSGDTMLDNAMKYKNSEMIAF  272 (284)
T ss_pred             hhhhc-CcchhhHHHHHhhcCCcHHHHHHHHhccccccc-h-------------hhhccCCcchHHHhHHhcCcHHHHHH
Confidence            11111 1122233333  334456788888888743200 0             02334689999999999999999999


Q ss_pred             HHHcCCC
Q 041785          167 LTREDPD  173 (181)
Q Consensus       167 Ll~~g~~  173 (181)
                      |+++||-
T Consensus       273 Llk~GA~  279 (284)
T PF06128_consen  273 LLKYGAI  279 (284)
T ss_pred             HHHcCcc
Confidence            9999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.22  E-value=0.33  Score=28.08  Aligned_cols=47  Identities=21%  Similarity=0.337  Sum_probs=37.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHc
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE  170 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  170 (181)
                      .-+..|+.+|+.++++..++.+ .+                        ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~------------------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP------------------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc------------------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4568899999999999888653 21                        15668999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.86  E-value=0.68  Score=32.83  Aligned_cols=95  Identities=8%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHh-ccc--ccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccc---cccCCCc
Q 041785           26 DPNLFKAAADGSVEPFKDMAREV-IES--SLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQ---VNAKGDT   99 (181)
Q Consensus        26 ~t~l~~a~~~g~~~~~~~ll~~~-~~~--~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~g~t   99 (181)
                      .+++-+++.++.-+++.+|+..- ...  .+....+..-+-++...-..+..+++.+++.   .-+++|.   +-..|.|
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~---Glv~vN~~F~~~NSGdt  256 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINR---GLVDVNKKFQKVNSGDT  256 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhc---cccccchhhhccCCcch
Confidence            47788888888889999998731 110  0122233334555411223345666666665   2344444   2457999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhc
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLA  123 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~  123 (181)
                      .|.-|..+++.+++..|+..|+..
T Consensus       257 MLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  257 MLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHHhHHhcCcHHHHHHHHHcCccc
Confidence            999999999999999999999865

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.82  E-value=2.7  Score=28.85  Aligned_cols=50  Identities=10%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             HHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH
Q 041785           28 NLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI   82 (181)
Q Consensus        28 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~   82 (181)
                      .+--|+..+.++++++.-+...+-   -...++..-.|  |+..+.++++|+.+.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElA--C~~qkydiV~WI~qn   98 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELA--CEEQKYDIVKWIGQN   98 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHH--HHHccccHHHHHhhc
Confidence            345666777777777766543321   23455666778  888888888888554

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.11  E-value=1.5  Score=25.29  Aligned_cols=46  Identities=17%  Similarity=0.134  Sum_probs=31.5

Q ss_pred             HHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH
Q 041785           28 NLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI   82 (181)
Q Consensus        28 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~   82 (181)
                      .+..|+..|+.++++.+++.+ .+   +   ...+..|  +..-+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~---~---~~~l~~A--I~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KP---D---NDCLEYA--IKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-cc---H---HHHHHHH--HHHhhHHHHHHHHHh
Confidence            467888888888888887643 11   1   3357777  666677788887775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		5e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		6e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-04
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 30/154 (19%)
Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           S++   L +AA +G+ +  KD+     + + +     T LH          A+ +  +EI
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHY---------AAKEGHKEI 52
Query: 83  LEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
           +++  +    VNAK   G TPLH AAK  H +IV++LI +                    
Sbjct: 53  VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA------------------ 94
Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
            +   +++  T LH A   G+ E+VK+L  +  D
Sbjct: 95  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 18/78 (23%)
Query: 96  KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
           KG+TPLHLAA Y H +IV VL+      +HG +            +   +N+ +T LH A
Sbjct: 46  KGNTPLHLAADYDHLEIVEVLL------KHGAD------------VNAHDNDGSTPLHLA 87
Query: 156 VSHGNVEVVKILTREDPD 173
              G++E+V++L +   D
Sbjct: 88  ALFGHLEIVEVLLKHGAD 105

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           S++   L +AA +G+ +  KD+     + + +     T LH         +A+    +E+
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLH---------HAAENGHKEV 52
Query: 83  LEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE---- 135
           +++  +    VNAK   G TPLH AA+  H ++V++LI +       D +  + +     
Sbjct: 53  VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE 112
Query: 136 -AFRQMIRMV----------NNEKNTALHEAVSHGNVEVVKILTRE 170
              +++++++          +++  T L  A  HGN EVVK+L ++
Sbjct: 113 NGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 21/103 (20%)
Query: 74  ASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEP 130
           A+ K   EI+E+       VNA    GDTPLHLAA Y H +IV VL+      ++G +  
Sbjct: 54  AAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLL------KNGADVN 107
Query: 131 ESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
            +    F            T LH A   G++E+V++L +   D
Sbjct: 108 ATDTYGF------------TPLHLAADAGHLEIVEVLLKYGAD 138

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 88  ALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQL----AQHGDEEPESGIEAFRQM--- 140
           AL+   +A+G T LHLAAK  H+++V+ L+   Q+       G   P      ++ +   
Sbjct: 68  ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 141 ---------IRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
                    I + +NE+N  LH A   G V++ +IL     D
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
           +A G TPLHLAA Y H +IV VL+      +HG +            +  ++   +T LH
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLL------KHGAD------------VNAIDIXGSTPLH 85
Query: 154 EAVSHGNVEVVKILTREDPD 173
            A   G++E+V++L +   D
Sbjct: 86  LAALIGHLEIVEVLLKHGAD 105

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 30/154 (19%)
Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           S++   L +AA +G+ +  KD+     + + +     T LH+         A+    +E+
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHL---------AAENGHKEV 52
Query: 83  LEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
           +++  +     NAK   G TPLHLAA+  H ++V++L+ +         +P +       
Sbjct: 53  VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA-------DPNA------- 98
Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
                +++  T LH A  +G+ EVVK+L  +  D
Sbjct: 99  ----KDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
           +A G TPLHLAA Y H +IV VL+      +HG +            +  ++   +T LH
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLL------KHGAD------------VNAIDIMGSTPLH 85
Query: 154 EAVSHGNVEVVKILTREDPD 173
            A   G++E+V++L +   D
Sbjct: 86  LAALIGHLEIVEVLLKHGAD 105

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 68  CQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGD 127
           C E E      V+E+L   P+LLLQ +  G  PLH +  +   +I   L+ + +     D
Sbjct: 10  CMENEFFK---VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66
Query: 128 EEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
              +SG                T  H A S GN+EVVK L
Sbjct: 67  YPDDSGW---------------TPFHIACSVGNLEVVKSL 91

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 68  CQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGD 127
           C E E      V+E+L   P+LLLQ +  G  PLH +  +   +I   L+ + +     D
Sbjct: 10  CMENEFFK---VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66
Query: 128 EEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
              +SG                T  H A S GN+EVVK L
Sbjct: 67  YPDDSGW---------------TPFHIACSVGNLEVVKSL 91

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 38/146 (26%)
Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  AA +G +E  K +    +E+   V+ K+    T LH+        N   + V+ +LE
Sbjct: 6   LHLAARNGHLEVVKLL----LEAGADVNAKDKNGRTPLHL-----AARNGHLEVVKLLLE 56
Query: 85  ICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
                   VNAK   G TPLHLAA+  H ++V++L+             E+G +     +
Sbjct: 57  AGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLL-------------EAGAD-----V 94
Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
              +    T LH A  +G++EVVK+L
Sbjct: 95  NAKDKNGRTPLHLAARNGHLEVVKLL 120

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 24/97 (24%)
Query: 83  LEICPALL---LQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           LE+   LL     VNAK   G TPLHLAA+  H ++V++L+E             +G + 
Sbjct: 15  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-------------AGAD- 60
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
               +   +    T LH A  +G++EVVK+L     D
Sbjct: 61  ----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 18/77 (23%)
Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G TPLHLAAK  H +IV VL++                  +   +   +N   T LH A 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLK------------------YGADVNAWDNYGATPLHLAA 88
Query: 157 SHGNVEVVKILTREDPD 173
            +G++E+V++L +   D
Sbjct: 89  DNGHLEIVEVLLKHGAD 105

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 68  CQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGD 127
           C E E      V+E+L   P+LLLQ +  G  PLH +  +   +I   L+ + +     D
Sbjct: 10  CMENEFFK---VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66
Query: 128 EEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
              +SG                T  H A S GN+EVVK L
Sbjct: 67  YPDDSGW---------------TPFHIACSVGNLEVVKSL 91

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 97  GDTPLHLAAKYSHFDIVRVL------------IERAQLAQHGDEEPESGIEAFRQMIRMV 144
           G +PLHLAA+Y HF    VL            ++R  L     E   + +E   +    V
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 145 NNE---KNTALHEAVSHGNVEVVKILTREDPD 173
           N +   K TALH A  H + EVV++L +   D
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 83  LEICPALL---LQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           LEI   LL     VNAK   G TPLHLAA+  H +IV VL+      ++G +   S    
Sbjct: 60  LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL------KNGADVNASDSHG 113
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
           F            T LH A   G++E+V++L +   D
Sbjct: 114 F------------TPLHLAAKRGHLEIVEVLLKNGAD 138

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 21/84 (25%)
Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           VNA+   GDTPLHLAA+  H +IV VL++                      +  ++   +
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVLLKNG------------------ADVNALDFSGS 81
Query: 150 TALHEAVSHGNVEVVKILTREDPD 173
           T LH A   G++E+V++L +   D
Sbjct: 82  TPLHLAAKRGHLEIVEVLLKYGAD 105

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 96  KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
           KG TPLH+AAKY    +  +L+ER       D  P +                 T LH A
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLER-------DAHPNA-----------AGKNGLTPLHVA 186
Query: 156 VSHGNVEVVKILT-REDPDYPYSANNY 181
           V H N+++VK+L  R    +  + N Y
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGY 213

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 30/154 (19%)
Query: 23  SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
           S++   L +AA +G+ +  KD+     + + +     T LH          A+    +EI
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHY---------AAENGHKEI 52
Query: 83  LEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
           +++  +     NAK   G TPLH AA+  H +IV++L+ +         +P +       
Sbjct: 53  VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA-------DPNA------- 98
Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
                +++  T LH A  +G+ E+VK+L  +  D
Sbjct: 99  ----KDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-12
2etb_A	256	Transient receptor potential cation channel subfam	9e-09
2etb_A	256	Transient receptor potential cation channel subfam	4e-08
2etb_A	256	Transient receptor potential cation channel subfam	8e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-09
2rfa_A	232	Transient receptor potential cation channel subfa	3e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	2e-08
2rfa_A	232	Transient receptor potential cation channel subfa	7e-08
2rfa_A	232	Transient receptor potential cation channel subfa	9e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	8e-11
2pnn_A	273	Transient receptor potential cation channel subfa	7e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 62.2 bits (152), Expect = 2e-13
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 21/88 (23%)

Query: 83  LEICPALLLQ---VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
                 L+ +   + +     L  AA+    D VR+L+       +G +     + A   
Sbjct: 7   HHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMA------NGAD-----VAA--- 52

Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                +   +T LH A  +G++EVVK+L
Sbjct: 53  ----KDKNGSTPLHLAARNGHLEVVKLL 76

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           V AK   G TPLHLAA+  H ++V++L+E       G +            +   +    
Sbjct: 50  VAAKDKNGSTPLHLAARNGHLEVVKLLLE------AGAD------------VXAQDKFGK 91

Query: 150 TALHEAVSHGNVEVVKIL 167
           TA   ++ +GN ++ +IL
Sbjct: 92  TAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 21/64 (32%)

Query: 104 AAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEV 163
            + + H      L+ R             G          + ++    L EA   G  + 
Sbjct: 1   GSSHHHHHHSSGLVPR-------------GSH--------MGSDLGKKLLEAARAGQDDE 39

Query: 164 VKIL 167
           V+IL
Sbjct: 40  VRIL 43

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 38/148 (25%)

Query: 32  AAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILEICP 87
           A          ++ R+V      ++ +N    T LH+         A      EI E   
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL---------AVITNQPEIAE--- 62

Query: 88  ALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHG-DEEPESGIEAFRQ 139
             LL        +   G+TPLHLA +      V VL +              S ++A   
Sbjct: 63  -ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ------SCTTPHLHSILKA--- 112

Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                N   +T LH A  HG + +V++L
Sbjct: 113 ----TNYNGHTCLHLASIHGYLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.4 bits (150), Expect = 4e-12
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 26/124 (20%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRV 115
           ++ LH+ II     +       E++      L  +N +     TPLHLA   +  +I   
Sbjct: 9   DSFLHLAII-----HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 116 LIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP 175
           L+        G +              + +   NT LH A   G +  V +LT+      
Sbjct: 64  LL------GAGCD------------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105

Query: 176 YSAN 179
             + 
Sbjct: 106 LHSI 109

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 14/76 (18%)

Query: 92  QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
           Q+   GD+ LHLA  +    +   +I   Q+                  +   NN + T 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIR--QVKGDLAF------------LNFQNNLQQTP 48

Query: 152 LHEAVSHGNVEVVKIL 167
           LH AV     E+ + L
Sbjct: 49  LHLAVITNQPEIAEAL 64

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 39/120 (32%)

Query: 59  NTILHINIICQETENASTKFVEEILEIC--PALLLQVNAK---GDTPLHLAAKYSHFDIV 113
           NT LH+       E      V  + + C  P L   + A    G T LHLA+ + +  IV
Sbjct: 79  NTPLHL-----ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133

Query: 114 RVLIERAQLAQHGDEEPESGIEAFRQMIRMVN-NEKN-----TALHEAVSHGNVEVVKIL 167
            +L+        G                  + N +      TALH AV   N ++V +L
Sbjct: 134 ELLVS------LG-----------------ADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.3 bits (129), Expect = 3e-09
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 25/92 (27%)

Query: 83  LEICPALLLQ---VNAK----GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
           L I   L+     VNA+    G T LHLA    + D+V +L++       G +       
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK------CGAD------- 176

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                +  V  +  +         +  + + L
Sbjct: 177 -----VNRVTYQGYSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 13/83 (15%), Positives = 19/83 (22%), Gaps = 25/83 (30%)

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
           LLL+    VN     G +P  L        I + L +         E  +          
Sbjct: 169 LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ------LTLENLQ---------- 212

Query: 142 RMVNNEKNTALHEAVSHGNVEVV 164
             +  E              E  
Sbjct: 213 --MLPESEDEESYDTESEFTEFT 233

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 62.8 bits (154), Expect = 4e-13
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 17/75 (22%)

Query: 93  VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
            N++ D  L  AAK    + V+ L                         R +   ++T L
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCT-----VQSVN------------CRDIEGRQSTPL 46

Query: 153 HEAVSHGNVEVVKIL 167
           H A  +  V VV+ L
Sbjct: 47  HFAAGYNRVSVVEYL 61

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.7 bits (133), Expect = 4e-10
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 25/91 (27%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            E+   L+     VN       TPLH AA    ++I ++L++      HG +        
Sbjct: 88  YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ------HGAD-----PTK 136

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   N + NT L      G+ ++  +L
Sbjct: 137 -------KNRDGNTPLDLV-KDGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.7 bits (133), Expect = 4e-10
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
                    TPLH AA Y+   +V  L++      HG +     + A        +    
Sbjct: 35  CRDIEGRQSTPLHFAAGYNRVSVVEYLLQ------HGAD-----VHA-------KDKGGL 76

Query: 150 TALHEAVSHGNVEVVKIL 167
             LH A S+G+ EV ++L
Sbjct: 77  VPLHNACSYGHYEVAELL 94

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 143 MVNNEKNTALHEAVSHGNVEVVKIL 167
           M N+E +  L EA   G+VE VK L
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKL 27

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 62.5 bits (153), Expect = 9e-13
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 19/75 (25%)

Query: 93  VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
           V ++ +TP   AA+ +    +  L+E               ++A       V+    TAL
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDR------------DVDA-------VDENGRTAL 80

Query: 153 HEAVSHGNVEVVKIL 167
                 G+ + V++L
Sbjct: 81  LFVAGLGSDKCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 22/79 (27%)

Query: 93  VNAK----GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK 148
           ++ +    G T LH+AA Y   ++V  L+E       G +     IE         +   
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVE------LGAD-----IEV-------EDERG 143

Query: 149 NTALHEAVSHGNVEVVKIL 167
            TAL  A            
Sbjct: 144 LTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.7 bits (125), Expect = 8e-09
 Identities = 8/76 (10%), Positives = 16/76 (21%), Gaps = 21/76 (27%)

Query: 92  QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
           +   +G     +  K  H                         +        V +E  T 
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYI-------------AAD--------VVSEYETP 47

Query: 152 LHEAVSHGNVEVVKIL 167
              A    + + +  L
Sbjct: 48  WWTAARKADEQALSQL 63

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 6/44 (13%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERA 120
            E+  AL+     +  +   G T L LA +          ++  
Sbjct: 123 PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 23/158 (14%)

Query: 27  PNLFKAAADGSVEPFKDMAREVIESSLT----VHTKN----TILHI-NIICQETENASTK 77
             LF   + G  E    +   +  +S       +T+     T L    +  Q+  NA   
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 78  FVEEILEICPALLLQVNA-------KGDTPLHLAAKYSHFDIVRVLIERAQLAQHG-DEE 129
            + +I +        VNA       +G + LH+A +      V++L+E      +G D  
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE------NGADVH 117

Query: 130 PESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
             +    F++            L  A      +VV  L
Sbjct: 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.1 bits (125), Expect = 9e-09
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 59  NTILHINIICQETENASTKFV----EEILEICPALLLQ------VNAKGDTPLHLAAKYS 108
           NT+LH  ++  +    ++  V    + +L++   L          N +G TPL LAAK  
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232

Query: 109 HFDIVRVLIER 119
             +I R +++R
Sbjct: 233 KIEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQM-IRMVNNEKNTALHEA 155
           G+ PL LAA    +D+V  L+E        +     G      + +   N+ +N+AL   
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 156 VSHGNVEVVKIL 167
           +  G +++   L
Sbjct: 196 MYDGLLQMGARL 207

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 18/80 (22%)

Query: 88  ALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNE 147
            +++  N+  ++ L +        +   L    QL                    + N++
Sbjct: 179 LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL------------------EEISNHQ 220

Query: 148 KNTALHEAVSHGNVEVVKIL 167
             T L  A   G +E+ + +
Sbjct: 221 GLTPLKLAAKEGKIEIFRHI 240

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.1 bits (147), Expect = 2e-12
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 18/75 (24%)

Query: 93  VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
           + +  D     A K    D V+  +        G++     +                 L
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVA------KGED-----VNR-------TLEGGRKPL 44

Query: 153 HEAVSHGNVEVVKIL 167
           H A   G +E+++ L
Sbjct: 45  HYAADCGQLEILEFL 59

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 59.7 bits (146), Expect = 3e-12
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           VN     G  PLH AA     +I+  L+        G     + I A        +    
Sbjct: 33  VNRTLEGGRKPLHYAADCGQLEILEFLLL------KG-----ADINA-------PDKHHI 74

Query: 150 TALHEAVSHGNVEVVKIL 167
           T L  AV  G+V  VK+L
Sbjct: 75  TPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.4 bits (127), Expect = 1e-09
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 24/89 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           LEI   LLL+   +NA      TPL  A    H   V++L+        G     +    
Sbjct: 53  LEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS------KG-----ADKTV 101

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVK 165
                     +  TA     +     +++
Sbjct: 102 -------KGPDGLTAFEATDNQAIKALLQ 123

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.9 bits (144), Expect = 2e-12
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           LE+   LL     VNAK   G TPLHLAA+  H ++V++L+E       G     + + A
Sbjct: 15  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE------AG-----ADVNA 63

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   +    T LH A  +G++EVVK+L
Sbjct: 64  -------KDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.2 bits (137), Expect = 3e-11
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 18/71 (25%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G TPLHLAA+  H ++V++L+E       G +     + A        +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE------AGAD-----VNA-------KDKNGRTPLHLAA 43

Query: 157 SHGNVEVVKIL 167
            +G++EVVK+L
Sbjct: 44  RNGHLEVVKLL 54

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.7 bits (102), Expect = 3e-06
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
           LE+   LL     VNAK   G TPLHLAA+  H ++V++L+E
Sbjct: 48  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.9 bits (154), Expect = 3e-12
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 33/115 (28%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQ---VNAK---GDTPLHLAAKYSHFDI 112
            T LH          A      +  ++   LL +   VN K     TPLH+AA+ +H D+
Sbjct: 212 ETALHC---------AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDV 262

Query: 113 VRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           + VL +      HG +            +  +++   TALH A   G+++  ++L
Sbjct: 263 MEVLHK------HGAK------------MNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           + I   LL     V+AK   G  PLH A  Y H+++  +L++      HG          
Sbjct: 71  VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK------HGAC-------- 116

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
               +  ++  + T LHEA S   VEV  +L
Sbjct: 117 ----VNAMDLWQFTPLHEAASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 4e-11
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 29/101 (28%)

Query: 74  ASTKFVEEILEICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHG 126
           A +   E+++     LL       +A      TPLHLAA Y+   IV++L+      QHG
Sbjct: 32  ARSGNEEKLMA----LLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL------QHG 81

Query: 127 DEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                + + A        +      LH A S+G+ EV ++L
Sbjct: 82  -----ADVHA-------KDKGGLVPLHNACSYGHYEVTELL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.3 bits (137), Expect = 4e-10
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 21/91 (23%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           VNA      TPLH AA  +  ++  +L+       HG +              +VN    
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLS------HGAD------------PTLVNCHGK 158

Query: 150 TALHEAVSHGNVEVVKILTREDPDYPYSANN 180
           +A+  A +    E +    +       +   
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHSLLQAAREA 189

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 21/77 (27%)

Query: 94  NAKGDTPLHLAAKYSHF---DIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNT 150
               +T LH A    H     +  +L+        G              +   N +  T
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLR------KGAN------------VNEKNKDFMT 249

Query: 151 ALHEAVSHGNVEVVKIL 167
            LH A    + +V+++L
Sbjct: 250 PLHVAAERAHNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 29/91 (31%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            ++   L      +NA    G T LH AA   H    R+L+       +G     S    
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS------YG-----SDPSI 308

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                  ++ +  TA          E V+ +
Sbjct: 309 -------ISLQGFTAAQMG-----NEAVQQI 327

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 27/89 (30%)

Query: 88  ALLL-----QVNAKGD----TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFR 138
           AL L     +    G+      L  A   +   ++ +L                 +    
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL-------------NVN--- 50

Query: 139 QMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                 +  K+T LH A  +  V +V++L
Sbjct: 51  --CHASDGRKSTPLHLAAGYNRVRIVQLL 77

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.2 bits (90), Expect = 8e-04
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 28/78 (35%)

Query: 96  KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN---TAL 152
           KG + L  AA+ +    V+       LA                       +     TAL
Sbjct: 178 KGHSLLQ-AAREADLAKVKKT-----LALEII----------------NFKQPQSHETAL 215

Query: 153 HEAVSHG---NVEVVKIL 167
           H AV+       +V ++L
Sbjct: 216 HCAVASLHPKRKQVAELL 233

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 18/155 (11%), Positives = 49/155 (31%), Gaps = 38/155 (24%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVH-----TKN----TILHINIICQETENASTKFV 79
           L +A    +    ++    ++++  +         N    + LH          A     
Sbjct: 177 LMRAMEFRN----REALDLMMDTVPSKSSLRLDYANKQGNSHLHW---------AILINW 223

Query: 80  EEILEICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPES 132
           E++        ++    VN +      PL+L+ + +   + + L+++  +         +
Sbjct: 224 EDVAM----RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279

Query: 133 GIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           G       +          +  A      EV+++L
Sbjct: 280 G-----TTVLPDRVVWLDFVPAAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 9e-12
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 19/91 (20%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           LE+   L+       AK    +TPL  A ++ + + + ++++                  
Sbjct: 153 LEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR--------- 203

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
               +   N + N+ LH A+     +V    
Sbjct: 204 ----LDYANKQGNSHLHWAILINWEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 31/88 (35%)

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
            L++       +   G T LHLA K+   D  + L         G+              
Sbjct: 38  RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS------VGEV------------- 78

Query: 142 RMVNNEKN--TALHEAVSHGNVEVVKIL 167
              ++  +    +H AV     ++V  L
Sbjct: 79  ---HSLWHGQKPIHLAVMANKTDLVVAL 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
                      +H+AA+    D VR LIE       G                + N    
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIE------TGVS------------PTIQNRFGC 54

Query: 150 TALHEAVSHGNVEVVKIL 167
           TALH A   G V+  K L
Sbjct: 55  TALHLACKFGCVDTAKYL 72

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.6 bits (135), Expect = 9e-10
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 18/77 (23%)

Query: 91  LQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNT 150
           L         +  AA  S  +++++L E        DE     +           N    
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQE------KLDE-----VVR-------SLNTGAG 325

Query: 151 ALHEAVSHGNVEVVKIL 167
              +        V ++ 
Sbjct: 326 GAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 20/88 (22%)

Query: 93  VNAK-GDTPLHLAAKYSHFDIVRVLIERA---------QLAQHGDEE-PESGIEAFRQMI 141
            +   G  P+HLA   +  D+V  L+E A          L +  + E  E G        
Sbjct: 79  HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHV----- 133

Query: 142 RMVNNEKNTALHEAVSHGN--VEVVKIL 167
              + +  TALH  V  G   +E++KIL
Sbjct: 134 --KHCKGQTALHWCVGLGPEYLEMIKIL 159

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 7/79 (8%), Positives = 18/79 (22%), Gaps = 24/79 (30%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            E+   L  +   V      G        K +   + R+ +                   
Sbjct: 303 QEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA------PSAP-------- 348

Query: 137 FRQMIRMVNNEKNTALHEA 155
               +R  +  +  +   +
Sbjct: 349 ----VRTRSRSRARSSAVS 363

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 60.5 bits (148), Expect = 3e-12
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 23/91 (25%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           L+    LL     VN +   G+ PLHLAAK  H  +V  L++      H           
Sbjct: 83  LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK------HTASNVGHR--- 133

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   N++ +TA   A  +G  EVV ++
Sbjct: 134 --------NHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            EI   LLL+    + K   G   +H AA+    D ++ L+E         +     +  
Sbjct: 50  PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE------FQAD-----VNI 98

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   +NE N  LH A   G++ VV+ L
Sbjct: 99  -------EDNEGNLPLHLAAKEGHLRVVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 51.6 bits (125), Expect = 5e-09
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 25/91 (27%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           LE   +LL     VNA+   G T L +     + +I R L+        G     +  + 
Sbjct: 18  LEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLL------RG-----ANPDL 65

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   +      +H+A   G ++ ++ L
Sbjct: 66  -------KDRTGFAVIHDAARAGFLDTLQTL 89

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 19/72 (26%)

Query: 96  KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
                L  AA     + +  L++      +        + A        N    TAL   
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQ------NNVN-----VNA-------QNGFGRTALQVM 45

Query: 156 VSHGNVEVVKIL 167
              GN E+ + L
Sbjct: 46  -KLGNPEIARRL 56

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 7/43 (16%)

Query: 83  LEICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
           L +   L+      V  +   GDT   LA  Y   ++V ++  
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.5 bits (148), Expect = 3e-12
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           +N      DTPLHLAA + H DIV+ L+      Q+  +     I A       VN   N
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLL------QYKAD-----INA-------VNEHGN 106

Query: 150 TALHEAVSHGNVEVVKIL 167
             LH A   G  +V + L
Sbjct: 107 VPLHYACFWGQDQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 25/86 (29%)

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
            LLQ    +NA    G+ PLH A  +    +   L+       +G              +
Sbjct: 90  KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA------NGAL------------V 131

Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
            + N      + +A +     + +  
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 17/71 (23%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
               +    +  +   VR+ ++      + + +   G           ++   + LH A 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLD------NTENDLNQG-----------DDHGFSPLHWAC 47

Query: 157 SHGNVEVVKIL 167
             G   VV++L
Sbjct: 48  REGRSAVVEML 58

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.1 bits (95), Expect = 9e-05
 Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 6/42 (14%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
            ++   L+     V+     G+ P+  A       +     +
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.9 bits (149), Expect = 4e-12
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 20/78 (25%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           +N +    D+P   A      +I+  +++      H   +               N    
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLK------HATPDLNKH-----------NRYGG 107

Query: 150 TALHEAVSHGNVEVVKIL 167
            AL  A   G+++ VK+L
Sbjct: 108 NALIPAAEKGHIDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.5 bits (135), Expect = 3e-10
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 36/115 (31%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQ---VNAK---GDTPLHLAAKYSHFDI 112
             +L           A+ +  +++ EI   L      V+     G+TPL++A   +  +I
Sbjct: 7   GALLEA---------ANQRDTKKVKEI---LQDTTYQVDEVDTEGNTPLNIAVHNNDIEI 54

Query: 113 VRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
            + LI+       G +     I          N+  ++    A + G  E++  +
Sbjct: 55  AKALID------RGAD-----INL-------QNSISDSPYLYAGAQGRTEILAYM 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 25/83 (30%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           +N     G   L  AA+  H D V++L+E       G E+ +             N+   
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLE------DGREDIDF-----------QNDFGY 141

Query: 150 TALHEAV-----SHGNVEVVKIL 167
           TAL EAV     +    ++VK+L
Sbjct: 142 TALIEAVGLREGNQLYQDIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 18/74 (24%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
             +    L  A +     +  +L +         +     ++        V+ E NT L+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD------TTYQ-----VDE-------VDTEGNTPLN 44

Query: 154 EAVSHGNVEVVKIL 167
            AV + ++E+ K L
Sbjct: 45  IAVHNNDIEIAKAL 58

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.1 bits (121), Expect = 4e-08
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 26/83 (31%)

Query: 93  VNAK---GDTPLHLAAKYS-----HFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMV 144
           ++ +   G T L  A         + DIV++L+E      +G +                
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME------NGAD-----QSI-------K 174

Query: 145 NNEKNTALHEAVSHGNVEVVKIL 167
           +N   TA+  A   G  E+ KIL
Sbjct: 175 DNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQ----VNAK---GDTPLHLAAKYSHFD 111
            T L   +  +E        V+        LL++     + K   G T +  A +  + +
Sbjct: 141 YTALIEAVGLREGNQLYQDIVK--------LLMENGADQSIKDNSGRTAMDYANQKGYTE 192

Query: 112 IVRVLIE 118
           I ++L +
Sbjct: 193 ISKILAQ 199

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.7 bits (146), Expect = 4e-12
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 18/74 (24%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
           N +G+T LH+A+       V  L++      +G +                ++   T LH
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQ------NGSD-----PNV-------KDHAGWTPLH 48

Query: 154 EAVSHGNVEVVKIL 167
           EA +HG+++VV++L
Sbjct: 49  EACNHGHLKVVELL 62

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.7 bits (146), Expect = 4e-12
 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 27/87 (31%)

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHG-DEEPESGIEAFRQM 140
           LLLQ    VN      D+PLH AAK  H DIV++L+       +G               
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS------YGAS------------- 101

Query: 141 IRMVNNEKNTALHEAVSHGNVEVVKIL 167
              VN      +          ++ + 
Sbjct: 102 RNAVNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 6/44 (13%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERA 120
           ++I   LL      NA    G  P+      S   ++ +  +  
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 19/75 (25%)

Query: 93  VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
           V ++ +TP   AA+ +    +  L+E               ++A       V+    TAL
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRD------------VDA-------VDENGRTAL 81

Query: 153 HEAVSHGNVEVVKIL 167
                 G+ + V++L
Sbjct: 82  LFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 22/79 (27%)

Query: 93  VNAK----GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK 148
           ++ +    G T LH+AA Y   ++V  L+E       G +     IE         +   
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVE------LGAD-----IEV-------EDERG 144

Query: 149 NTALHEAVSHGNVEVVKIL 167
            TAL  A            
Sbjct: 145 LTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.9 bits (120), Expect = 6e-08
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 37/157 (23%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN-----TILHINIICQETENASTKFVEEIL 83
           L   A  GS        R + E+   +  ++     T LH+         A+     E++
Sbjct: 81  LLFVAGLGS----DKCVRLLAEAGADLDHRDMRGGLTALHM---------AAGYVRPEVV 127

Query: 84  EICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           E     L++    +  +   G T L LA +          ++     + G E+  + +E 
Sbjct: 128 E----ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG--RRIGLEKVINVLEG 181

Query: 137 FRQMIRMV------NNEKNTALHEAVSHGNVEVVKIL 167
                  V        +     +        +   + 
Sbjct: 182 QVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 8/76 (10%), Positives = 16/76 (21%), Gaps = 21/76 (27%)

Query: 92  QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
           +   +G     +  K  H                  +               V +E  T 
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSY------IAAD---------------VVSEYETP 48

Query: 152 LHEAVSHGNVEVVKIL 167
              A    + + +  L
Sbjct: 49  WWTAARKADEQALSQL 64

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 26/99 (26%)

Query: 65  NIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQ 124
            I  ++  N     V E  E+    +++   KG    +L       D   V         
Sbjct: 169 RIGLEKVINVLEGQVFEYAEV--DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGV------ 220

Query: 125 HGDEEPESGIEAFRQMIRMVNNEKN--TALHEAVSHGNV 161
           H  E+                  K+    L  AV+   +
Sbjct: 221 HVAED----------------VAKDYEDGLEYAVAESVI 243

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.3 bits (150), Expect = 5e-12
 Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 44/153 (28%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLT----VHTKN----TILHINIICQETENASTKFVE 80
           L  A   G+          ++         +   N    T LH+         A    + 
Sbjct: 13  LHIAVVQGN----LPAVHRLVNLFQQGGRELDIYNNLRQTPLHL---------AVITTLP 59

Query: 81  EILEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGI 134
            ++ +   L+       A    G T  HLA ++     +R L++               +
Sbjct: 60  SVVRL---LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD------SAAPGTLD-L 109

Query: 135 EAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           EA        N +  TALH AV+    E V++L
Sbjct: 110 EA-------RNYDGLTALHVAVNTECQETVQLL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.5 bits (148), Expect = 7e-12
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 17/78 (21%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
                  GDTPLH+A    +   V  L+      Q G E            + + NN + 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNL--FQQGGRE------------LDIYNNLRQ 47

Query: 150 TALHEAVSHGNVEVVKIL 167
           T LH AV      VV++L
Sbjct: 48  TPLHLAVITTLPSVVRLL 65

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 26/112 (23%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRV 115
           +T LHI          +   V  ++ +      +++       TPLHLA   +   +VR+
Sbjct: 10  DTPLHI-----AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 116 LIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           L+        G     +   A       ++    TA H A  H +   ++ L
Sbjct: 65  LVT------AG-----ASPMA-------LDRHGQTAAHLACEHRSPTCLRAL 98

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 45/150 (30%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN-----TILHINIICQETENASTKFVEEIL 83
           L  A         ++  + ++E    +   +     + L           A       ++
Sbjct: 120 LHVAVNTEC----QETVQLLLERGADIDAVDIKSGRSPLIH---------AVENNSLSMV 166

Query: 84  EICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
           ++   LL     VNA+   G + LH A+      +VR L+        G +         
Sbjct: 167 QL---LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR------SGAD--------- 208

Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                + N   +T L  A S   +++++  
Sbjct: 209 ---SSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.9 bits (136), Expect = 4e-10
 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 33/146 (22%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  A           + R ++ +  +    +    T  H+       E+ S   +  +L+
Sbjct: 50  LHLAVITTL----PSVVRLLVTAGASPMALDRHGQTAAHL-----ACEHRSPTCLRALLD 100

Query: 85  ICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
                 L + A+   G T LH+A      + V++L+E       G     + I+A     
Sbjct: 101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE------RG-----ADIDAVD--- 146

Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
                   + L  AV + ++ +V++L
Sbjct: 147 ---IKSGRSPLIHAVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIER 119
           L +   L+      + K    DTPL +A      DI+R    R
Sbjct: 196 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.7 bits (146), Expect = 6e-12
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 46/150 (30%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  A+A G +E      R ++E     H       + L +         AST    +I+ 
Sbjct: 40  LIWASAFGEIE----TVRFLLEWGADPHILAKERESALSL---------ASTGGYTDIVG 86

Query: 85  ICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
               LLL+    +N     G TPL  A + +H   V  L+        G +     +   
Sbjct: 87  ----LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA------RGAD-----LTT- 130

Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   +   T +  AV+ G  +V +++
Sbjct: 131 ------EADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 58.2 bits (142), Expect = 3e-11
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 25/92 (27%)

Query: 83  LEICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
           L+     L +    VN     G TPL  A+ +   + VR L+E       G +       
Sbjct: 15  LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------WGAD-----PH 63

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   +  E+ +AL  A + G  ++V +L
Sbjct: 64  I-------LAKERESALSLASTGGYTDIVGLL 88

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.3 bits (132), Expect = 7e-10
 Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 17/71 (23%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
               +H  A     D ++  +        GD                 +    T L  A 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLR------KGDNLVNKP-----------DERGFTPLIWAS 44

Query: 157 SHGNVEVVKIL 167
           + G +E V+ L
Sbjct: 45  AFGEIETVRFL 55

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIER 119
           ++   ALL +   +  +   G TP+ LA    +  + +V+   
Sbjct: 115 VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.7 bits (146), Expect = 6e-12
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
             I   LL Q    N +   G +P+H AA+    D ++VL+E      HG +     +  
Sbjct: 48  TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE------HGAD-----VNV 96

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   +      +H AV  G+  VV  L
Sbjct: 97  -------PDGTGALPIHLAVQEGHTAVVSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.3 bits (145), Expect = 8e-12
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 25/91 (27%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           L+    L+     VN     G  P+HLA +  H  +V  L   +                
Sbjct: 81  LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD--------------- 125

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
               +   +    T L  A+  G  ++V IL
Sbjct: 126 ----LHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.0 bits (126), Expect = 4e-09
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 25/92 (27%)

Query: 79  VEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
           V  +L          +A    G T L +   +    I   L++       G         
Sbjct: 18  VRRLLHRELV---HPDALNRFGKTALQVMM-FGSTAIALELLK------QGAS-----PN 62

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                    +    + +H+A   G ++ +K+L
Sbjct: 63  V-------QDTSGTSPVHDAARTGFLDTLKVL 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 18/72 (25%)

Query: 96  KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
           +    L  AA       VR L+      +                   +N    TAL   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH-----RELVH------------PDALNRFGKTALQVM 43

Query: 156 VSHGNVEVVKIL 167
              G+  +   L
Sbjct: 44  -MFGSTAIALEL 54

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 6/36 (16%)

Query: 89  LLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
            L     ++ +   G TPL LA +    D+V +L  
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 61.3 bits (150), Expect = 6e-12
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 33/116 (28%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQ----VNAK---GDTPLHLAAKYSHFD 111
              L          ++    VE I      LLL     VN +   G TPL LA +  H  
Sbjct: 183 RNALIH-----ALLSSDDSDVEAITH----LLLDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 112 IVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           +V+ L+E     Q   E     I          +++  TAL  AV     ++ ++L
Sbjct: 234 LVQRLLE-----QEHIE-----IND-------TDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 57.9 bits (141), Expect = 1e-10
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 25/92 (27%)

Query: 83  LEICPALLLQ---VNAK----GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
           +++   LL     VN +    G TPLH A + S  DIV +L+       HG     +   
Sbjct: 18  VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR------HG-----ADPV 66

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                         T    A   G+V+++K+ 
Sbjct: 67  L-------RKKNGATPFLLAAIAGSVKLLKLF 91

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 25/97 (25%)

Query: 81  EILEICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHG---DEEP 130
           ++L+    L L     VN     G T    AA Y     ++ L +       G   +   
Sbjct: 86  KLLK----LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK------RGANVNLRR 135

Query: 131 ESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           ++  +        +     TAL +A   G+VEV+KIL
Sbjct: 136 KTKED-----QERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 17/74 (22%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
             + +  L  A +    D+V+ L+E       G       +               T LH
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLE------GGAN-----VNF------QEEEGGWTPLH 44

Query: 154 EAVSHGNVEVVKIL 167
            AV     ++V++L
Sbjct: 45  NAVQMSREDIVELL 58

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 21/80 (26%)

Query: 92  QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
           ++   G T L  AA+  H +++++L++            E G +     +   +N    A
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLD------------EMGAD-----VNACDNMGRNA 185

Query: 152 LHEAVSHGNV----EVVKIL 167
           L  A+   +      +  +L
Sbjct: 186 LIHALLSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 23/102 (22%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  A         + +   +++    V+ +     T L +         A  K    +++
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL---------AVEKKHLGLVQ 236

Query: 85  ICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIER 119
               LL Q    +N     G T L LA +     I  +L +R
Sbjct: 237 R---LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 59.3 bits (145), Expect = 8e-12
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 46/150 (30%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L +AA  G      D  R ++ +   V+ ++    T LH+         A+     EI+E
Sbjct: 18  LLEAARAGR----DDEVRILMANGADVNAEDASGWTPLHL---------AAFNGHLEIVE 64

Query: 85  ICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
               +LL+    VNA    G TPL LAA + H +IV VL++      +G +     + A 
Sbjct: 65  ----VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK------NGAD-----VNA- 108

Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                  + E +T LH A   G++E+V++L
Sbjct: 109 ------NDMEGHTPLHLAAMFGHLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.8 bits (141), Expect = 4e-11
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           VNA    G TPLHLAA + H +IV VL++      +G     + + A        +    
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLK------NG-----ADVNA-------QDKFGK 147

Query: 150 TALHEAVSHGNVEVVKIL 167
           TA   ++ +GN ++ +IL
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 54.3 bits (132), Expect = 7e-10
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
            +     L  AA+    D VR+L+       +G +     + A        +    T LH
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMA------NGAD-----VNA-------EDASGWTPLH 52

Query: 154 EAVSHGNVEVVKIL 167
            A  +G++E+V++L
Sbjct: 53  LAAFNGHLEIVEVL 66

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 5e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
           LEI   LL     VNA+   G T   ++    + D+  +L +
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.2 bits (142), Expect = 8e-12
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           VNA+   G+TPLHLAAK  H +IV++L+        G +     + A        + + N
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLA------KGAD-----VNA-------RSKDGN 76

Query: 150 TALHEAVSHGNVEVVKIL 167
           T  H A  +G+ E+VK+L
Sbjct: 77  TPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.1 bits (134), Expect = 1e-10
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 19/76 (25%)

Query: 93  VNAK-GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
             +K G+TPLH AAK  H + V+ L+        G +     + A        + + NT 
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLS------KGAD-----VNA-------RSKDGNTP 45

Query: 152 LHEAVSHGNVEVVKIL 167
           LH A  +G+ E+VK+L
Sbjct: 46  LHLAAKNGHAEIVKLL 61

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.8 bits (102), Expect = 4e-06
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 24/77 (31%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            EI   LL +   VNA+   G+TP HLA K  H +IV++L         G +     + A
Sbjct: 55  AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA------KGAD-----VNA 103

Query: 137 FRQMIRMVNNEKNTALH 153
                   +   +   H
Sbjct: 104 -------RSWGSSHHHH 113

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 60.9 bits (148), Expect = 8e-12
 Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 22/156 (14%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN--------TILHI-NIICQETENASTKFV 79
           LF   + GS +  + +   ++     +  +         T L    +      N +   +
Sbjct: 9   LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68

Query: 80  EEILEICPALLLQVNA-------KGDTPLHLAAKYSHFDIVRVLIER-AQLAQHGDEEPE 131
            +I E    +   +N+       +G T LH+A +      V +L+E+ A +         
Sbjct: 69  LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-----HAQA 123

Query: 132 SGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
            G     +            L  A       +V  L
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 59  NTILHINIICQETENASTKFVEEILEI----------CPALLLQVNAKGDTPLHLAAKYS 108
           NT+LH  +   +    +TKFV ++ ++             L   +N  G +PL +AAK  
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

Query: 109 HFDIVRVLIER 119
              I + +I R
Sbjct: 237 KIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 15/64 (23%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G+ PL LAA  +   IV  L E      +G ++ +         +R  ++  NT LH  V
Sbjct: 140 GELPLSLAACTNQPHIVHYLTE------NGHKQAD---------LRRQDSRGNTVLHALV 184

Query: 157 SHGN 160
           +  +
Sbjct: 185 AIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 11/81 (13%)

Query: 93  VNAK---GDTPLHLAAKYSH--FDIVRVLIERAQLA-QHGDEEPESGIEAFRQMIRMVNN 146
           +  +   G+T LH     +    +  + + +   L      +     +     +  ++NN
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK-----LFPDTNLEALLNN 223

Query: 147 EKNTALHEAVSHGNVEVVKIL 167
           +  + L  A   G + + + +
Sbjct: 224 DGLSPLMMAAKTGKIGIFQHI 244

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 59.3 bits (145), Expect = 9e-12
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 25/86 (29%)

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
            LLQ            ++ L LA    + DIV++L++       G +     +       
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD------CGVD-----VNE----- 97

Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
              +    T L  AV   +V+ VK+L
Sbjct: 98  --YDWNGGTPLLYAVHGNHVKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 58.9 bits (144), Expect = 1e-11
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 25/86 (29%)

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
           +LL     VN     G TPL  A   +H   V++L+E       G     +         
Sbjct: 87  MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE------SG-----ADPTI----- 130

Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
               +    ++  AV+ G   V +++
Sbjct: 131 --ETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.3 bits (132), Expect = 7e-10
 Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 18/71 (25%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
               +H  A       +   IE        +      I          + E  T L  A 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIE------QENV-----INH-------TDEEGFTPLMWAA 44

Query: 157 SHGNVEVVKIL 167
           +HG + VV+ L
Sbjct: 45  AHGQIAVVEFL 55

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 6/43 (13%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIER 119
           ++    LL        +   G   + LA    +  + +V+   
Sbjct: 115 VKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.1 bits (142), Expect = 1e-11
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 23/79 (29%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHG-DEEPESGIEAFRQMIRMVNNEK 148
           VNAK   G TPLHLAA+  H ++V++L+E       G D      + A        +   
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLE------AGAD------VNA-------KDKNG 101

Query: 149 NTALHEAVSHGNVEVVKIL 167
            T LH A  +G++EVVK+L
Sbjct: 102 RTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.1 bits (142), Expect = 1e-11
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           VNAK   G TPLHLAA+  H ++V++L+E       G +     + A        +    
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLE------AGAD-----VNA-------KDKNGR 69

Query: 150 TALHEAVSHGNVEVVKIL 167
           T LH A  +G++EVVK+L
Sbjct: 70  TPLHLAARNGHLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 56.2 bits (137), Expect = 6e-11
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 18/71 (25%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G TPLHLAA+  H ++V++L+E       G +     + A        +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE------AGAD-----VNA-------KDKNGRTPLHLAA 43

Query: 157 SHGNVEVVKIL 167
            +G++EVVK+L
Sbjct: 44  RNGHLEVVKLL 54

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.1 bits (103), Expect = 4e-06
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIER 119
           LE+   LL     VNAK   G TPLHLAA+  H ++V++L+E 
Sbjct: 81  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           L I   LL +    N      +TPLH+AA+  H ++ + L++      +      + + A
Sbjct: 27  LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ------NK-----AKVNA 75

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                     +  T LH A   G+  +VK+L
Sbjct: 76  -------KAKDDQTPLHCAARIGHTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            E+   LL +    N     G TPLHL A+  H  +  VLI+      HG       ++A
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK------HGVM-----VDA 306

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                        T LH A  +GN+++VK L
Sbjct: 307 -------TTRMGYTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 46/150 (30%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  AA +G      +    ++E   +         T LH+         A+      + E
Sbjct: 117 LHIAAREGH----VETVLALLEKEASQACMTKKGFTPLHV---------AAKYGKVRVAE 163

Query: 85  ICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
               LLL+     NA    G TPLH+A  +++ DIV++L+        G           
Sbjct: 164 ----LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP------RGGS--------- 204

Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                       T LH A     VEV + L
Sbjct: 205 ---PHSPAWNGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
             +   LL      N     G TPLH+AA+  H + V  L+E             +    
Sbjct: 93  TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE------KE-----ASQAC 141

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                  +  +  T LH A  +G V V ++L
Sbjct: 142 -------MTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 58.7 bits (143), Expect = 8e-11
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 25/86 (29%)

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
            LLQ    VNAK   G +PLH AA+  H DIV +L++      +G               
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK------NGAS------------P 370

Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
             V+++  T L  A   G + V  +L
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVL 396

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
                  G TPLH+A+   H  IV+ L+      Q G                + N +  
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLL------QRGAS------------PNVSNVKVE 48

Query: 150 TALHEAVSHGNVEVVKIL 167
           T LH A   G+ EV K L
Sbjct: 49  TPLHMAARAGHTEVAKYL 66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           L+I   LL +    ++    G TPLH+AAK +  ++ R L++      +G         A
Sbjct: 192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ------YGGS-----ANA 240

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   + +  T LH A   G+ E+V +L
Sbjct: 241 -------ESVQGVTPLHLAAQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 24/86 (27%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            +I   LL      N     G TPL +A +  +  +  VL     +              
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV---VTDETSF-------- 405

Query: 137 FRQMIRMVNNEKNTALH---EAVSHG 159
               + + +  + +      E +   
Sbjct: 406 ----VLVSDKHRMSFPETVDEILDVS 427

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 25/98 (25%)

Query: 83  LEICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
            +I   L  Q    +N +   GDT LH AA   + DIV++L+        G         
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA------KGAR------- 165

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
                  + N EK  A   A +     ++K     D  
Sbjct: 166 -----TDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 19/86 (22%)

Query: 83  LEICPALLLQVNAK-GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
             + P+  +   A+  D PLH AAK  +   +R  ++      +               +
Sbjct: 58  TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD------NRVG------------V 99

Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
             ++   +TAL+ A   G+ ++V++L
Sbjct: 100 NGLDKAGSTALYWACHGGHKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 9/77 (11%), Positives = 18/77 (23%), Gaps = 18/77 (23%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G   +  A           L       + GD             I  + +  +T   +  
Sbjct: 12  GQVKVFRALYTFEPRTPDELYI-----EEGD-------------IIYITDMSDTNWWKGT 53

Query: 157 SHGNVEVVKILTREDPD 173
           S G   ++      +  
Sbjct: 54  SKGRTGLIPSNYVAEQA 70

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 6/83 (7%), Positives = 18/83 (21%), Gaps = 24/83 (28%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            +I   LL +    + +         +A   +   +++                      
Sbjct: 153 ADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-------------DAV- 198

Query: 137 FRQMIRMVNNEKNTALHEAVSHG 159
                 + N E      ++    
Sbjct: 199 ----RTLSNAEDYLDDEDSDLEH 217

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 19/76 (25%)

Query: 93  VNAK-GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
            N    + PLH AA      IV++L+        G                  +++ NTA
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLF------SG-----LDDSQ-------FDDKGNTA 98

Query: 152 LHEAVSHGNVEVVKIL 167
           L+ AV  GN++ VK+ 
Sbjct: 99  LYYAVDSGNMQTVKLF 114

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 9/91 (9%), Positives = 25/91 (27%), Gaps = 35/91 (38%)

Query: 89  LLLQ----VNAK----GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQM 140
           L ++    +         T  + A   +   IV   +                       
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS------EIP------------- 153

Query: 141 IRMVNNEKN----TALHEAVSHGNVEVVKIL 167
               +        + +H  + +G+V+++ +L
Sbjct: 154 ----STFDLAILLSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.6 bits (135), Expect = 8e-10
 Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 23/91 (25%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            +I   LL      +     G+T L+ A    +   V++ +      +         +  
Sbjct: 75  TKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV------KKN-----WRLMF 123

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                        T+ + AV   +V +V   
Sbjct: 124 ------YGKTGWKTSFYHAVMLNDVSIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 28/87 (32%)

Query: 88  ALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
              L           G +  + A   ++  +V  L+        G               
Sbjct: 16  KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLN------AGAL------------- 56

Query: 142 RMVNNEKN-TALHEAVSHGNVEVVKIL 167
              N  +N   LH+A +  + ++VKIL
Sbjct: 57  --KNLLENEFPLHQAATLEDTKIVKIL 81

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 20/89 (22%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNT-AL 152
            A   + +H+  K  H D++ +L++      +                   N+      +
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLD------YMTS------------TNTNNSLLFIPDI 199

Query: 153 HEAVSHGNVEVVKILTREDPDYPYSANNY 181
             A+ + ++E+++ L + D +  YSAN  
Sbjct: 200 KLAIDNKDIEMLQALFKYDIN-IYSANLE 227

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.4 bits (119), Expect = 9e-08
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 32/92 (34%)

Query: 83  LEICPALLLQ---VNAK---GDTP-LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
           +++   LL      N        P + LA      ++++ L +      +          
Sbjct: 174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK------YD--------- 218

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                         +A  E V   + E+ K++
Sbjct: 219 ----------INIYSANLENVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 12/96 (12%), Positives = 31/96 (32%), Gaps = 22/96 (22%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN-----TILHINIICQETENASTKFVEEIL 83
           +     +G      DM   +++   + +T N       + +         A      E+L
Sbjct: 165 IHITIKNGH----VDMMILLLDYMTSTNTNNSLLFIPDIKL---------AIDNKDIEML 211

Query: 84  EICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER 119
           +     L + +    +           +I +++IE+
Sbjct: 212 Q----ALFKYDINIYSANLENVLLDDAEIAKMIIEK 243

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.8 bits (141), Expect = 2e-11
 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 44/149 (29%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L +AA  G      D  R ++ +   V+ K+    T L++         A+     EI+E
Sbjct: 18  LLEAARAGQ----DDEVRILMANGADVNAKDEYGLTPLYL---------ATAHGHLEIVE 64

Query: 85  ICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFR 138
           +   LL     VNA    G TPLHLAA   H +I  VL++      HG +          
Sbjct: 65  V---LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK------HGAD---------- 105

Query: 139 QMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
             +   +    TA   ++ +GN ++ +IL
Sbjct: 106 --VNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 56.2 bits (137), Expect = 6e-11
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 36/115 (31%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQ---VNAK---GDTPLHLAAKYSHFDI 112
              L           A+    ++ + I   L+     VNAK   G TPL+LA  + H +I
Sbjct: 15  GKKLLE---------AARAGQDDEVRI---LMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 113 VRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           V VL++      +G +     + A       V+    T LH A   G++E+ ++L
Sbjct: 63  VEVLLK------NGAD-----VNA-------VDAIGFTPLHLAAFIGHLEIAEVL 99

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.0 bits (126), Expect = 3e-09
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 18/74 (24%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
            +     L  AA+    D VR+L+       +G +     + A        +    T L+
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMA------NGAD-----VNA-------KDEYGLTPLY 52

Query: 154 EAVSHGNVEVVKIL 167
            A +HG++E+V++L
Sbjct: 53  LATAHGHLEIVEVL 66

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
           LEI   LL     VNA+   G T   ++    + D+  +L +
Sbjct: 93  LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.3 bits (145), Expect = 2e-11
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 24/97 (24%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           ++I   LL     ++A    GD+PLH+AA+ + +D V + +              S +  
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS------RD-----SDVTL 205

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
                   N E  T L  A  +  V     +++   D
Sbjct: 206 -------KNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 4e-11
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 23/91 (25%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           LE    L+     V+ K   G T LHLAAK  H+++V+ L+       +G  +       
Sbjct: 57  LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS------NGQMDVNCQ--- 107

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   ++   T +  A  + +V++VK+L
Sbjct: 108 --------DDGGWTPMIWATEYKHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 4e-11
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 25/92 (27%)

Query: 83  LEICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
            E+   LL      VN +   G TP+  A +Y H D+V++L+        G     S I 
Sbjct: 90  YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS------KG-----SDIN 138

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                    +NE+N  LH A   G V++ +IL
Sbjct: 139 I-------RDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.8 bits (141), Expect = 7e-11
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           ++IC  L+     ++       TPL  AA+ +H + V+ LI+       G     + ++ 
Sbjct: 24  VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK------AG-----ALVDP 72

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   + E +T LH A   G+ EVV+ L
Sbjct: 73  -------KDAEGSTCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.0 bits (139), Expect = 1e-10
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
              +     +PLH AA+  H DI  +L++       G       I+         + ++ 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQ------AGAN-----IDT-------CSEDQR 45

Query: 150 TALHEAVSHGNVEVVKIL 167
           T L EA  + ++E VK L
Sbjct: 46  TPLMEAAENNHLEAVKYL 63

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.5 bits (145), Expect = 3e-11
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 15/75 (20%)

Query: 93  VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
           V   GDT LHLA  + H   +  L+                  A  + + + N+   TAL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLL------GFS---------AGHEYLDLQNDLGQTAL 49

Query: 153 HEAVSHGNVEVVKIL 167
           H A   G    V+ L
Sbjct: 50  HLAAILGEASTVEKL 64

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.1 bits (144), Expect = 4e-11
 Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 21/83 (25%)

Query: 88  ALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMV 144
           A    ++ +   G T LHLAA       V  L         G     +G+          
Sbjct: 33  AGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA------AG-----AGVLV-------A 74

Query: 145 NNEKNTALHEAVSHGNVEVVKIL 167
               +TALH A          +L
Sbjct: 75  ERGGHTALHLACRVRAHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           + A+   G TPLH+A  +   ++VR+L +       G +     +               
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRD------AGAD-----LNKPE------PTCGR 193

Query: 150 TALHEAVSHGNVEVVKIL 167
           T LH AV      V+++L
Sbjct: 194 TPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 21/82 (25%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
             A+   G TPL  A    +  + R+L        HG                    +K 
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRA------HGAP------------EPEDGGDKL 259

Query: 150 TALHEAVSHGNVEVVKILTRED 171
           +    + S  + +        D
Sbjct: 260 SPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 11/80 (13%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           V      G T LHLA +        VL++           P    + +    +    + +
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQ------PRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 150 --TALHEAVSHGNVEVVKIL 167
              A  ++  +   E     
Sbjct: 125 HAPAAVDSQPNPENEEEPRD 144

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.8 bits (141), Expect = 3e-11
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
             I   LL     VNAK     T LH A +++H ++V +LI+      +G +     +  
Sbjct: 80  ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK------YGAD-----VHT 128

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   +    TA   ++ +GN ++ +IL
Sbjct: 129 -------QSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.3 bits (132), Expect = 5e-10
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 23/90 (25%)

Query: 83  LEICPALLLQ---VNAK--GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
            +    L+           G +PLHLAA+Y HF    VL+        G        +A 
Sbjct: 15  DDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR------AGVS-----RDA- 62

Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                       T LH A S G+  +V++L
Sbjct: 63  ------RTKVDRTPLHMAASEGHANIVEVL 86

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.8 bits (123), Expect = 8e-09
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 19/71 (26%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
               L  AA+    D VR+L+       +G                  +    + LH A 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMA------NGAP-----FTT--------DWLGTSPLHLAA 42

Query: 157 SHGNVEVVKIL 167
            +G+    ++L
Sbjct: 43  QYGHFSTTEVL 53

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 16/78 (20%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           V+ +   G+T LH+AA Y + +   VL+E         E     + +          E  
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLME------AAPELVFEPMTS-------ELYEGQ 76

Query: 150 TALHEAVSHGNVEVVKIL 167
           TALH AV + NV +V+ L
Sbjct: 77  TALHIAVINQNVNLVRAL 94

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 28/116 (24%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQ----VNAK---GDTPLHLAAKYSHFD 111
              L           A+    EEI+     LL++    + A+   G+T LH+     +  
Sbjct: 122 EHPLSF---------AACVGSEEIVR----LLIEHGADIRAQDSLGNTVLHILILQPNKT 168

Query: 112 IVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
               +     L  +       G    + +  + NN+  T    A   GN+ + + L
Sbjct: 169 FACQMYN--LLLSYD-----GGDHL-KSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHG-DEEPESGIEAFRQMIRMVNNEK 148
           + ++   G T LH+A    + ++VR L+        G      +    F      +    
Sbjct: 68  MTSELYEGQTALHIAVINQNVNLVRALLA------RGASVSARATGSVFHYRPHNLIYYG 121

Query: 149 NTALHEAVSHGNVEVVKIL 167
              L  A   G+ E+V++L
Sbjct: 122 EHPLSFAACVGSEEIVRLL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 18/72 (25%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G+ PL  AA     +IVR+LIE      HG +            IR  ++  NT LH  +
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIE------HGAD------------IRAQDSLGNTVLHILI 162

Query: 157 SHGNVEVVKILT 168
              N      + 
Sbjct: 163 LQPNKTFACQMY 174

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.5 bits (119), Expect = 7e-08
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 17/71 (23%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
            ++PL LAAK +    +  L     L   G E            +        TALH A 
Sbjct: 3   WESPLLLAAKENDVQALSKL-----LKFEGCE------------VHQRGAMGETALHIAA 45

Query: 157 SHGNVEVVKIL 167
            + N+E   +L
Sbjct: 46  LYDNLEAAMVL 56

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 22/104 (21%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  AA  GS    +++ R +IE    +  ++    T+LHI I        +  F  ++  
Sbjct: 125 LSFAACVGS----EEIVRLLIEHGADIRAQDSLGNTVLHILI-----LQPNKTFACQMYN 175

Query: 85  I---------CPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER 119
           +           +L L  N +G TP  LA    +  + + L+++
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 58.6 bits (143), Expect = 3e-11
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           +N     G T LHLA     F++ + LIE      +G              +R+ +    
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIE------NGAS------------VRIKDKFNQ 141

Query: 150 TALHEAVSHGNVEVVKIL 167
             LH A S G+++++++L
Sbjct: 142 IPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 18/78 (23%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           +  K   G  PLH +  +   +I   L+         +      +          ++   
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLS------KMEN-----VNL----DDYPDDSGW 73

Query: 150 TALHEAVSHGNVEVVKIL 167
           T  H A S GN+EVVK L
Sbjct: 74  TPFHIACSVGNLEVVKSL 91

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.1 bits (134), Expect = 6e-10
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 25/94 (26%)

Query: 83  LEICPALLLQ---VNAK------GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESG 133
            EI   LL +   VN        G TP H+A    + ++V+ L +R              
Sbjct: 49  HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD--------- 99

Query: 134 IEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                  +  + N+  T LH AV     EV + L
Sbjct: 100 -------LNKITNQGVTCLHLAVGKKWFEVSQFL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 23/78 (29%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           VN +   G TPL  A    H D   +L+E     ++G E              +V+N+  
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVE-----KYGAE------------YDLVDNKGA 209

Query: 150 TALHEAVSHGNVEVVKIL 167
            A   A++    +V K  
Sbjct: 210 KAEDVALNE---QVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 17/71 (23%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
            + PLH A   + F  V+ L     L           +          + +    LH +V
Sbjct: 2   SNYPLHQACMENEFFKVQEL-----LHSKPSL-----LLQ-------KDQDGRIPLHWSV 44

Query: 157 SHGNVEVVKIL 167
           S    E+   L
Sbjct: 45  SFQAHEITSFL 55

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.2 bits (142), Expect = 4e-11
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 36/113 (31%)

Query: 58  KNTILHINIICQETENASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVR 114
              +  I            K + + L+         N +     TPL +A      + + 
Sbjct: 8   GEIVEKI---------KDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAID 52

Query: 115 VLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
            L+E      + D+     +E         + E +TAL  AV +  + + + L
Sbjct: 53  KLVE------NFDK-----LED-------KDIEGSTALIWAVKNNRLGIAEKL 87

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 56.6 bits (138), Expect = 1e-10
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 23/79 (29%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHG-DEEPESGIEAFRQMIRMVNNEK 148
           VN +   G+TPL +A+KY   +IV+ L+E       G D      I A        +   
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLE------LGAD------ISA-------RDLTG 167

Query: 149 NTALHEAVSHGNVEVVKIL 167
            TA   A   G  EV+KI 
Sbjct: 168 LTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 55.5 bits (135), Expect = 3e-10
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           +  K   G T L  A K +   I   L+        G       +          +    
Sbjct: 61  LEDKDIEGSTALIWAVKNNRLGIAEKLLS------KGSN-----VNT-------KDFSGK 102

Query: 150 TALHEAVSHGNVEVVKIL 167
           T L  ++  G  E+   L
Sbjct: 103 TPLMWSIIFGYSEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 8/75 (10%), Positives = 17/75 (22%), Gaps = 24/75 (32%)

Query: 93  VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
           ++  G+    +  + S    +  L                            ++   T L
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNYR------------------------DSYNRTPL 39

Query: 153 HEAVSHGNVEVVKIL 167
             A   G    +  L
Sbjct: 40  MVACMLGMENAIDKL 54

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.1 bits (90), Expect = 5e-04
 Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
           ++A+   G T    A  +   +++++  E
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTE 188

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.0 bits (144), Expect = 4e-11
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 22/79 (27%)

Query: 92  QVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK 148
           QVN       TPL  A     +D V +L++      HG     + ++          ++ 
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQ------HG-----ASVQP--------ESDL 157

Query: 149 NTALHEAVSHGNVEVVKIL 167
            + +HEA   G+VE V  L
Sbjct: 158 ASPIHEAARRGHVECVNSL 176

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.7 bits (143), Expect = 7e-11
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
                 L+ Q   VN       +PLH A    H   V++L++      HG +     +  
Sbjct: 72  QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK------HGAQ-----VNG 120

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                  V  + +T L  A   G+ + V +L
Sbjct: 121 -------VTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.3 bits (142), Expect = 7e-11
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 46/149 (30%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN---TILHINIICQETENASTKFVEEILEI 85
           LF A   GS     D    +++   +V  ++   + +H          A+ +   E +  
Sbjct: 129 LFNACVSGS----WDCVNLLLQHGASVQPESDLASPIHE---------AARRGHVECVN- 174

Query: 86  CPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFR 138
               L+     ++ K     TPL+LA +      V+ L+E       G +     +    
Sbjct: 175 ---SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE------SGAD-----VNQ-- 218

Query: 139 QMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                    +++ LH  V   + E+  +L
Sbjct: 219 ------GKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 18/74 (24%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
                +P+H AA + H   +R LI        G              + ++  +  + LH
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLIS------QGWA------------VNIITADHVSPLH 97

Query: 154 EAVSHGNVEVVKIL 167
           EA   G++  VKIL
Sbjct: 98  EACLGGHLSCVKIL 111

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.5 bits (127), Expect = 9e-09
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 23/87 (26%)

Query: 83  LEICPALLLQ---VNAK--GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
                 LL     VN     D+PLH   + +  ++  +L++       G     +  +A 
Sbjct: 203 RACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD------FG-----ADTQA- 250

Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVV 164
                  N E    +        +  +
Sbjct: 251 ------KNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 13/78 (16%)

Query: 103 LAAKYSHFDIVRVLIER-AQL-AQHGDEEPESGIEAFRQMIRM---------VNNEKN-- 149
           + + + H      L+ R + + +  G +    G +                 + +  +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 150 TALHEAVSHGNVEVVKIL 167
           + +HEA  HG+   ++ L
Sbjct: 61  SPMHEAAIHGHQLSLRNL 78

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 25/98 (25%)

Query: 83  LEICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
           + I   L+ +     + +   G TP+ LAA+    ++V  LI+       G     + +E
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ------QG-----ASVE 340

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
           A       V+   +TA   A ++ +  +V I  R  P+
Sbjct: 341 A-------VDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 37/146 (25%)

Query: 32  AAADGSVEPFKDMAREVIESSLTVHTKN---TILHINIICQETENASTKFVEEILEICPA 88
             A GS      +   +   S+ +       T+LH         N+S +  E+++     
Sbjct: 100 TEAAGS----YAITEPITRESVNIIDPRHNRTVLHW-----IASNSSAEKSEDLIVHEAK 150

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
             +     VNA     +TPL LA       +V  L++       G +             
Sbjct: 151 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK------AGAD-----PTI----- 194

Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
              N  + +ALH+A ++ +  ++  +
Sbjct: 195 --YNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 17/87 (19%)

Query: 81  EILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQM 140
           ++     A       KG T LH AA+ S+  IV+ L+             E G       
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG------------EKGSN----- 305

Query: 141 IRMVNNEKNTALHEAVSHGNVEVVKIL 167
               + +  T +  A   G +EVV  L
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 16/150 (10%), Positives = 35/150 (23%), Gaps = 35/150 (23%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPA 88
           L +A+ DG ++          + +   H                      + +       
Sbjct: 41  LLEASYDGYIK---------RQRNELQHYSLYPNPQGYGNGNDF------LGDFNHTNLQ 85

Query: 89  LLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK 148
           +  +   +    LH  A    + I   +              +                 
Sbjct: 86  IPTEPEPESPIKLHTEAA-GSYAITEPITR------ESVNIID-------------PRHN 125

Query: 149 NTALHEAVSHGNVEVVKILTREDPDYPYSA 178
            T LH   S+ + E  + L   +     +A
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAA 155

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 18/77 (23%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
                    + LH AA    F ++  ++             +   +     I  ++    
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYML----------NSTKLKGD-----IEELDRNGM 236

Query: 150 TALHEAVSHGNVEVVKI 166
           TAL     +   + V  
Sbjct: 237 TALMIVAHNEGRDQVAS 253

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 58.2 bits (142), Expect = 5e-11
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 21/79 (26%)

Query: 92  QVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK 148
            +          +  A +Y  ++  R L+E       G +            +R  + E 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVE------AGYD------------VRQPDKEN 42

Query: 149 NTALHEAVSHGNVEVVKIL 167
            T LH A  +  +++VK  
Sbjct: 43  VTLLHWAAINNRIDLVKYY 61

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 22/79 (27%)

Query: 93  VNAK----GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK 148
           VN       +T LH A    +  ++ +L+E       G     + ++A        N + 
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLE------AG-----ANVDA-------QNIKG 210

Query: 149 NTALHEAVSHGNVEVVKIL 167
            +AL  A    NV ++  L
Sbjct: 211 ESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 56.3 bits (137), Expect = 3e-10
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 25/92 (27%)

Query: 83  LEICPALLLQ---VNAK----GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
           +++    + +   V+        TPLH A +  H  +V  L++      +G +       
Sbjct: 55  IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK------YGAD-----PS 103

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   ++ E  + +H A   G+  +V  L
Sbjct: 104 L-------IDGEGCSCIHLAAQFGHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.9 bits (136), Expect = 4e-10
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 23/91 (25%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            E C  L+     V        T LH AA  +  D+V+  I        G       ++ 
Sbjct: 22  YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS------KGAI-----VDQ 70

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                    +  +T LH A   G++ +V  L
Sbjct: 71  LG------GDLNSTPLHWATRQGHLSMVVQL 95

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 3e-09
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 22/79 (27%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
            +     G + +HLAA++ H  IV  LI        G +            + M++    
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIA------KGQD------------VDMMDQNGM 143

Query: 150 TALHEAVSHGN-VEVVKIL 167
           T L  A    + V+  ++L
Sbjct: 144 TPLMWAAYRTHSVDPTRLL 162

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
             +   LL     V+A+   G++ L LA +  +  ++  L E
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.2 bits (142), Expect = 6e-11
 Identities = 29/117 (24%), Positives = 39/117 (33%), Gaps = 26/117 (22%)

Query: 59  NTILHINIICQETENASTKFVEE-ILEICPALLLQ----VNAK---GDTPLHLAAKYSHF 110
            T L I               EE    +    + Q     N     G+T LHLAA+YS  
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70

Query: 111 DIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           D  + L+E         +              + +N   T LH AVS     V +IL
Sbjct: 71  DAAKRLLE------ASAD------------ANIQDNMGRTPLHAAVSADAQGVFQIL 109

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           ++A+   G TPL LAA+ +   ++  LI          +     + A       V++   
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLIN------SHAD-----VNA-------VDDLGK 158

Query: 150 TALHEAVSHGNVEVVKIL 167
           +ALH A +  NV+   +L
Sbjct: 159 SALHWAAAVNNVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 44/149 (29%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  AA        + M  ++I S   V+  +    + LH          A+     +   
Sbjct: 128 LILAARLAV----EGMLEDLINSHADVNAVDDLGKSALHW---------AAAVNNVDAAV 174

Query: 85  ICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFR 138
           +   LL      + +    +TPL LAA+   ++  +VL++      H      +  +   
Sbjct: 175 V---LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD------HF-----ANRDI-- 218

Query: 139 QMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                 ++        A    + ++V++L
Sbjct: 219 -----TDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 41/95 (43%)

Query: 93  VNAK---GDTPLHLAAKY-------------SHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           VN +   G TPL +A+                   ++   I        G          
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY------QGAS-------- 48

Query: 137 FRQMIRMVNNEKN----TALHEAVSHGNVEVVKIL 167
                  ++N+ +    TALH A  +   +  K L
Sbjct: 49  -------LHNQTDRTGETALHLAARYSRSDAAKRL 76

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 11/51 (21%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGD 127
            E    LL      +        P  +A +  H DIVR+L       +H  
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL-----EHHH 248

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.0 bits (141), Expect = 6e-11
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
            +     G T LH A    H +IV+ L++       G       + A        +++  
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQ------FG-----VNVNA-------ADSDGW 104

Query: 150 TALHEAVSHGNVEVVKIL 167
           T LH A S  NV+V K L
Sbjct: 105 TPLHCAASCNNVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 20/77 (25%)

Query: 93  VNAK--GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNT 150
           V         L  ++    FD+V+ +I         D+              + N+E  T
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIY------EVDD------------PSLPNDEGIT 72

Query: 151 ALHEAVSHGNVEVVKIL 167
           ALH AV  G+ E+VK L
Sbjct: 73  ALHNAVCAGHTEIVKFL 89

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 47/152 (30%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  ++ +G      D+ + +I         N    T LH          A      EI++
Sbjct: 41  LLDSSLEGE----FDLVQRIIYEVDDPSLPNDEGITALHN---------AVCAGHTEIVK 87

Query: 85  ICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
                L+Q    VNA    G TPLH AA  ++  + + L+E       G       + A 
Sbjct: 88  ----FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE------SGAA-----VFA- 131

Query: 138 RQMIRMVNNEKNTA--LHEAVSHGNVEVVKIL 167
                M  ++  TA    E +  G  +  + L
Sbjct: 132 -----MTYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 19/71 (26%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G   L    + +        I       HG       ++         N      L ++ 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIA------HGMR-----VKF--------NPLPLALLLDSS 45

Query: 157 SHGNVEVVKIL 167
             G  ++V+ +
Sbjct: 46  LEGEFDLVQRI 56

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 9/90 (10%), Positives = 24/90 (26%), Gaps = 27/90 (30%)

Query: 83  LEICPALLLQ---VNAK------GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESG 133
           +++C  L+     V A                +  +    + L          ++     
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG------VQEK----- 164

Query: 134 IEAFRQMIRMVNNEKNTALHEAVSHGNVEV 163
                  + ++N     AL +     + E+
Sbjct: 165 -------MGIMNKGVIYALWDYEPQNDDEL 187

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.3 bits (141), Expect = 8e-11
 Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 22/156 (14%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN--------TILHINIICQETENAST---- 76
           +F A A  + +  + +   +  S   +            T L   ++        T    
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 77  ----KFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER-AQLAQHGDEEPE 131
               +  + + +   A       KG T LH+A +  +  +V +L+E  A +     +   
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-----QAAA 131

Query: 132 SGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           +G    +   R         L  A     + +VK L
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.5 bits (126), Expect = 7e-09
 Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 35/112 (31%)

Query: 59  NTILHINIICQETENASTKFVEEI----------LEICPALLLQVNAKGDTPLHLAAKYS 108
           NT+LH  +   +    +TKFV  +          L     L    N KG TPL LAA   
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244

Query: 109 HFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN 160
              ++  +++R                            +    H A  H +
Sbjct: 245 KIGVLAYILQR-------------------------EIHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           ++A+   G+T LH   + +   +       +   +       + +    ++  + N +  
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI--LILGAKLHPTLKLEEITNRKGL 234

Query: 150 TALHEAVSHGNVEVVKIL 167
           T L  A S G + V+  +
Sbjct: 235 TPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 15/71 (21%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G+ PL LAA  +   IV+ L++      +  +  +         I   ++  NT LH  V
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQ------NSWQPAD---------ISARDSVGNTVLHALV 192

Query: 157 SHGNVEVVKIL 167
              +  V    
Sbjct: 193 EVADNTVDNTK 203

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.5 bits (135), Expect = 1e-10
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 22/78 (28%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           ++      D  L  AA     + VR L+E       G +       A       +N    
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLE------AGAD-----PNA-------LNRFGR 46

Query: 150 TALHEAVSHGNVEVVKIL 167
             +      G+ +V ++L
Sbjct: 47  RPIQVM-MMGSAQVAELL 63

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.1 bits (134), Expect = 2e-10
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 25/92 (27%)

Query: 83  LEICPALLLQ---VNAK---GDT-PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
            ++   LLL     N       T P+H AA+    D + VL         G       ++
Sbjct: 57  AQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR------AGAR-----LD 105

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                    +      +  A   G+ ++ + L
Sbjct: 106 V-------CDAWGRLPVDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 26/92 (28%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           +E    LL      NA    G  P+ +        +  +L+       HG     +    
Sbjct: 25  VETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLL------HG-----AEPNC 72

Query: 137 FRQMIRMVNNEKNT-ALHEAVSHGNVEVVKIL 167
                   +    T  +H+A   G ++ + +L
Sbjct: 73  -------ADPATLTRPVHDAAREGFLDTLVVL 97

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 6/43 (13%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIER 119
           L+    L      ++     G  P+ LA +  H DI R L   
Sbjct: 91  LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.1 bits (139), Expect = 2e-10
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
            E    LL +   +N     G T LH A    + D+V+ L+E      +G       I  
Sbjct: 53  TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE------NGAN-----INQ 101

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   +NE    LH A S G +++ + L
Sbjct: 102 -------PDNEGWIPLHAAASCGYLDIAEYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
                  G T LH+AA   + +++++LI      Q   +            + + + +  
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLI------QARYD------------VNIKDYDGW 233

Query: 150 TALHEAVSHGNVEVVKIL 167
           T LH A   G  E  +IL
Sbjct: 234 TPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 47/164 (28%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L +A  D +     DM + ++E+   ++  +      LH          A++    +I E
Sbjct: 77  LHQACIDDN----VDMVKFLVENGANINQPDNEGWIPLHA---------AASCGYLDIAE 123

Query: 85  ICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
                L+     V A    GDTPL +A + +  ++++  + R      G +   +  E  
Sbjct: 124 ----YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR-----QGVDIEAARKEEE 174

Query: 138 RQMIRMV----------NNEKN----TALHEAVSHGNVEVVKIL 167
           R M+R            +        TALH A + G  EV+K+L
Sbjct: 175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 20/78 (25%)

Query: 92  QVNAKGD--TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           +   K D       A      + V  L+ER             G +     I   N +  
Sbjct: 33  KTKVKFDDGAVFLAACSSGDTEEVLRLLER-------------GAD-----INYANVDGL 74

Query: 150 TALHEAVSHGNVEVVKIL 167
           TALH+A    NV++VK L
Sbjct: 75  TALHQACIDDNVDMVKFL 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.1 bits (113), Expect = 7e-07
 Identities = 10/74 (13%), Positives = 16/74 (21%), Gaps = 19/74 (25%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
           +AK      L         +   +          +               V  +      
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVV------KRKK-------------TKVKFDDGAVFL 45

Query: 154 EAVSHGNVEVVKIL 167
            A S G+ E V  L
Sbjct: 46  AACSSGDTEEVLRL 59

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 25/86 (29%)

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
           LL+Q    VN K   G TPLH AA +   +  R+L+E      +        +EA     
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE------NL-----CDMEA----- 260

Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
             VN    TA   A       + ++ 
Sbjct: 261 --VNKVGQTAFDVADEDILGYLEELQ 284

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 25/93 (26%)

Query: 82  ILEICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGI 134
              +    + Q     N     G+T LHLAA+YS  D  + L+E         +      
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE------ASAD------ 50

Query: 135 EAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   + +N   T LH AVS     V +IL
Sbjct: 51  ------ANIQDNMGRTPLHAAVSADAQGVFQIL 77

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
           ++A+   G TPL LAA+ +   ++  LI              + + A       V++   
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLIN------SH-----ADVNA-------VDDLGK 126

Query: 150 TALHEAVSHGNVEVVKIL 167
           +ALH A +  NV+   +L
Sbjct: 127 SALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           ++    LL      + +    +TPL LAA+   ++  +VL++      H      +  + 
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD------HF-----ANRDI 186

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   ++        A    + ++V++L
Sbjct: 187 -------TDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.5 bits (96), Expect = 8e-05
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 26/100 (26%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  AAA  +     D A  ++++      +N    T L +         A+ +   E  +
Sbjct: 129 LHWAAAVNN----VDAAVVLLKNGANKDMQNNREETPLFL---------AAREGSYETAK 175

Query: 85  ICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
           +   LL      +        P  +A +  H DIVR+L E
Sbjct: 176 V---LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.3 bits (138), Expect = 3e-10
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 18/104 (17%)

Query: 72  ENASTKFVEEI--LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEE 129
               +  ++ +  L     ++  + A+      LAA+  H  ++  L E          E
Sbjct: 101 ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE------LAPTE 154

Query: 130 PESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
                     ++ M+  E   A   A  +G++ V+  L    P 
Sbjct: 155 ----------IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 22/112 (19%)

Query: 72  ENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSH---FDIVRVLIERAQLAQHGDE 128
           + ++   V +++            +G   L    + +     D +R L+    +      
Sbjct: 259 KLSNPDGVFDLVTKSEC------LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT 312

Query: 129 EPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
                          +  + N  L  A+  GN     +L         +  N
Sbjct: 313 A-------------TIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN 351

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 6/103 (5%)

Query: 79  VEEILEICPALLLQ-VNAKGDTPLHLAA-KYSHFDIVRVLIER----AQLAQHGDEEPES 132
           +  + E+ P      + A+       AA    H +++  L++     A    H  E  E 
Sbjct: 179 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK 238

Query: 133 GIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP 175
            +  F         E + A   +   G  ++V         Y 
Sbjct: 239 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYM 281

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 6/75 (8%), Positives = 20/75 (26%), Gaps = 21/75 (28%)

Query: 93  VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
           +    +  L LA +  +     +L+    +                     +   K    
Sbjct: 315 IPGDANELLRLALRLGNQGACALLLSIPSV---------------------LALTKANNY 353

Query: 153 HEAVSHGNVEVVKIL 167
           +   + G +++  + 
Sbjct: 354 YINETGGRLDLRAVA 368

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 24/91 (26%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           LE+    + +    +     G T LH A   +++ IV  LI        G     + + +
Sbjct: 34  LEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT------AG-----ANVNS 82

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                   ++   T LH A S  +  +   L
Sbjct: 83  -------PDSHGWTPLHCAASCNDTVICMAL 106

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 24/82 (29%)

Query: 92  QVNAK------GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVN 145
                          L  AA     ++V+  ++        ++                N
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVK------EMND------------PSQPN 51

Query: 146 NEKNTALHEAVSHGNVEVVKIL 167
            E  TALH A+   N  +V  L
Sbjct: 52  EEGITALHNAICGANYSIVDFL 73

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 47/152 (30%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L  AA  G      ++ ++ ++        N    T LH          A       I++
Sbjct: 25  LLDAALTGE----LEVVQQAVKEMNDPSQPNEEGITALHN---------AICGANYSIVD 71

Query: 85  ICPALLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
                L+     VN+    G TPLH AA  +   I   L++      HG     + I A 
Sbjct: 72  ----FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ------HG-----AAIFA- 115

Query: 138 RQMIRMVNNEKNTALHEAVSH--GNVEVVKIL 167
                   ++  TA  +   +  G  +    L
Sbjct: 116 -----TTLSDGATAFEKCDPYREGYADCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 17/110 (15%), Positives = 26/110 (23%), Gaps = 33/110 (30%)

Query: 83  LEICPALLLQ---VNAK----GDTPLHLAAKYS--HFDIVRVLIERAQLAQHGDEEPE-- 131
             IC AL+     + A     G T       Y   + D    L +  Q     +      
Sbjct: 100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159

Query: 132 -----------------SGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVV 164
                              +   R+     +  + T    A  HG    V
Sbjct: 160 LWDYSAEFGDELSFREGESVTVLRR-----DGPEETDWWWAALHGQEGYV 204

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 25/92 (27%)

Query: 83  LEICPALLLQ---VNAKGD----TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
             +   LLL     N         P+H AA+    D + VL         G       ++
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR------AGAR-----LD 105

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                    +      +  A   G+ +V + L
Sbjct: 106 V-------RDAWGRLPVDLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 21/73 (28%)

Query: 96  KGDTPLHLAAKYSHFDIVRVLIER-AQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHE 154
                L  AA     + VR L+E  A               A        N+     +  
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGAN------------PNA-------PNSYGRRPIQV 51

Query: 155 AVSHGNVEVVKIL 167
               G+  V ++L
Sbjct: 52  M-MMGSARVAELL 63

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 48.6 bits (117), Expect = 7e-08
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 26/92 (28%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           +E   ALL      NA    G  P+ +        +  +L+       HG     +    
Sbjct: 25  VEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL------HG-----AEPNC 72

Query: 137 FRQMIRMVNNEKNT-ALHEAVSHGNVEVVKIL 167
                   +    T  +H+A   G ++ + +L
Sbjct: 73  -------ADPATLTRPVHDAAREGFLDTLVVL 97

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 29/88 (32%)

Query: 83  LEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
           L+    L      ++ +   G  P+ LA +  H D+ R L                    
Sbjct: 91  LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA------AA---------- 134

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVV 164
                       +       + G  ++ 
Sbjct: 135 -------GGTRGSNHARIDAAEGPSDIP 155

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 15/153 (9%), Positives = 41/153 (26%), Gaps = 29/153 (18%)

Query: 26  DPNLFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEE 81
              L+    + + E    ++  +I     + ++     T+                 +  
Sbjct: 39  SNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF------QGGGNDITG 92

Query: 82  ILEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIV-RVLIERAQLAQHGDEEPESGI 134
             E+C   L +   + A        +         D    + + +   +Q G +      
Sbjct: 93  TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ------ 146

Query: 135 EAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                 + + +    TAL           +K++
Sbjct: 147 ------LLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 31/147 (21%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPA 88
           +  AA  G+ E F ++  +  E       K+ IL+  +      N + +   +I      
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVL-----RNNNDEARYKISM---- 59

Query: 89  LLLQ----VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHG-DEEPESGIEAFRQM 140
            L+     + ++   G T      +    DI           + G D      I A    
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD------ITA---- 109

Query: 141 IRMVNNEKNTALHEAVSHGNVEVVKIL 167
              +       + + + +  V+  +++
Sbjct: 110 ---LYKPYKIVVFKNIFNYFVDENEMI 133

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 13/68 (19%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQ----VNAK---GDTPLHLAAKYSHFD 111
             ++  NI     +        E++ +   +  Q    +  K   G T L    +     
Sbjct: 115 KIVVFKNIFNYFVDEN------EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

Query: 112 IVRVLIER 119
            ++++ + 
Sbjct: 169 ALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 24/79 (30%)

Query: 94  NAKGD-TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
           NA  +   +  AA    ++    L E       G E+               +  K+  L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFE------KGYEDK-------------ESVLKSNIL 42

Query: 153 HEAVSH----GNVEVVKIL 167
           ++ + +       ++   L
Sbjct: 43  YDVLRNNNDEARYKISMFL 61

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 24/105 (22%)

Query: 82  ILEICPALLLQ---VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
           + E+   +L              T LH A    H +IV  L++       G       + 
Sbjct: 19  LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVP-----VN 67

Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
                    ++   + LH A S G  E+VK L  +         N
Sbjct: 68  D-------KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.8 bits (111), Expect = 6e-07
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 18/71 (25%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
                +LA      ++   ++                           + +  TALH A 
Sbjct: 7   NIMICNLAYSGKLDELKERILA------DKSL------------ATRTDQDSRTALHWAC 48

Query: 157 SHGNVEVVKIL 167
           S G+ E+V+ L
Sbjct: 49  SAGHTEIVEFL 59

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 18/106 (16%)

Query: 93  VNAK---GDTPLHLAAKYSHFDIVRVLIERAQ---------------LAQHGDEEPESGI 134
           VN K   G +PLH+AA     +IV+ L+ +                  A     E    +
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 135 EAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN 180
                     ++   TA+H A + GN+++V IL             
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 47.7 bits (113), Expect = 5e-07
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 74  ASTKFVEEILEICPALLLQVNAKGD----TPLHLAAKYSHFDIVRVLIERAQLAQHGDEE 129
           +    ++E+ +  P   L +N   D    TPLH     ++ ++V+ L++      HG   
Sbjct: 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK------HGSN- 156

Query: 130 PESGIEAFRQMIRMVNNEKNTALHEAVSHGN 160
                          +N   + L +AV   N
Sbjct: 157 -----------RLYGDNMGESCLVKAVKSVN 176

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 44.2 bits (104), Expect = 6e-06
 Identities = 21/174 (12%), Positives = 54/174 (31%), Gaps = 41/174 (23%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
           L    +  ++E    + + +++        +    + L      +   N  +   E +L+
Sbjct: 135 LHWLTSIANLE----LVKHLVKHGSNRLYGDNMGESCLVK--AVKSVNNYDSGTFEALLD 188

Query: 85  ICPALLLQVNAKGDTPLHLAA------------KYSHFDIVRVLIERAQ----------- 121
                L+  ++   T LH               KY    ++  ++++             
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 122 -----LAQHGDEEPESGIEAFRQMIRMVN---NEKNTALHEAVSHGNVEVVKIL 167
                      +     ++    +  M+N   +  +T L+ A   GN+ +V  L
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 21/87 (24%)

Query: 73  NASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEE 129
                 + E L++   +   +NA+   GDT L++AA+  +  IV  L++      +G + 
Sbjct: 256 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD------YGAD- 308

Query: 130 PESGIEAFRQMIRMVNNEKNTALHEAV 156
                        + N      +    
Sbjct: 309 -----------PFIANKSGLRPVDFGA 324

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 21/109 (19%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIE 118
            T LH+ +    + + ++  + + L      L +   KG T LH      + + +++L+ 
Sbjct: 170 ETALHLAV---RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL- 225

Query: 119 RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                +                I + N    T L  A    +    ++L
Sbjct: 226 -----RGK------------ASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 15/74 (20%)

Query: 96  KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
             +T LHLA +      + ++     L Q+               +     + +TALH  
Sbjct: 168 PDETALHLAVRSVDRTSLHIV---DFLVQNSGN------------LDKQTGKGSTALHYC 212

Query: 156 VSHGNVEVVKILTR 169
               N E +K+L R
Sbjct: 213 CLTDNAECLKLLLR 226

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 25/86 (29%)

Query: 89  LLLQ-------VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
            ++Q         A G+T LH AA Y+  D +++L++                   R ++
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG------------------RALV 252

Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
             VN    TAL  A    + E  ++L
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 15/84 (17%)

Query: 86  CPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVN 145
            P       A  +  LHLA K ++   + ++     + Q+G              +    
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLV---DFIIQNGGH------------LDAKA 223

Query: 146 NEKNTALHEAVSHGNVEVVKILTR 169
            + NTALH A  +   + +K+L +
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLK 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 15/76 (19%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
            A  +  LHLA K ++   +  L++   + Q+G              +     + NTALH
Sbjct: 168 QAPEELVLHLAVKVANQASL-PLVDF--IIQNG------------GHLDAKAADGNTALH 212

Query: 154 EAVSHGNVEVVKILTR 169
            A  +   + +K+L +
Sbjct: 213 YAALYNQPDCLKLLLK 228

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 32/161 (19%)

Query: 14  LD-STGEIKQSQMD--PNLFKA-AADGSVEPFKDMAREVI---ESSLTVHTKNTILH--- 63
           +D  TGE +    D       A   +   +  +DM + ++   E    + +K+ +     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 64  -INIICQETENASTKFVEEILEI-CPALLLQVNAKGDTPLHLAAKYSH-----FDIVRVL 116
               +  + E    KFVEE+L I    L+  +  +   P  +   Y       ++  +V 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 117 ----IERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
               + R Q                RQ +  +   KN  + 
Sbjct: 127 AKYNVSRLQP-----------YLKLRQALLELRPAKNVLID 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.92
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.92
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.92
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.9e-32  Score=183.97  Aligned_cols=133  Identities=26%  Similarity=0.288  Sum_probs=117.6

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..++.++++.|++.|++++.++..|.||||+|  +..++.+++++|++.    |++++.+|..|+||
T Consensus        33 ~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A--~~~g~~~~v~~Ll~~----gadvn~~d~~G~Tp  106 (169)
T 4gpm_A           33 SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA--AENGHKEVVKLLISK----GADVNAKDSDGRTP  106 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCH
Confidence            455789999999999999999999999999988899999999999  999999999999986    89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                      ||+|+..|+.+++++|++.|+++                  +.+|..|+|||++|+..|+.+++++|+++||+++.-
T Consensus       107 Lh~A~~~g~~~~v~~Ll~~gad~------------------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A          107 LHHAAENGHKEVVKLLISKGADV------------------NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCc------------------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence            99999999999999999999888                  889999999999999999999999999999998754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=5e-31  Score=177.90  Aligned_cols=130  Identities=26%  Similarity=0.367  Sum_probs=124.5

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAK  106 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~  106 (181)
                      ++|+.|++.|+.++|+.|++.|++++.+|..|.||||+|  +..++.++++.+++.    +++++.++..|+||||+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a--~~~~~~~~~~~ll~~----gad~~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA--AENGHKEVVKLLISK----GADVNAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHhc----ccchhhhccCCCCHHHHHHH
Confidence            469999999999999999999999999999999999999  999999999999986    99999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          107 YSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       107 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                      .|+.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++.++++
T Consensus        80 ~g~~~~v~~Ll~~gadv------------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~  135 (169)
T 4gpm_A           80 NGHKEVVKLLISKGADV------------------NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSD  135 (169)
T ss_dssp             TTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cCCHHHHHHHHHCcCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC
Confidence            99999999999999998                  899999999999999999999999999999999988753

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=1.9e-30  Score=169.14  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=122.5

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccC-CC
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAK-GD   98 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~   98 (181)
                      .....+.||||+|+..|+.+++++|++.|++++.++..|.||||+|  +. ++.+++++|++.    +++++.++.. |.
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~~----g~~~~~~~~~~g~   79 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM--MM-GSAQVAELLLLH----GAEPNCADPATLT   79 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTS--TT-SCHHHHHHHHHH----TCCSSCCBTTTTB
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHH--Hc-CCHHHHHHHHHC----CCCCCCcCCCCCC
Confidence            3455789999999999999999999999999998999999999999  99 999999999998    9999999999 99


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      ||||+|+..++.+++++|++.|+++                  +.+|..|.||||+|+..++.+++++|+++|+|
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~------------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARL------------------DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCC------------------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999988                  88999999999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=2.7e-30  Score=172.12  Aligned_cols=135  Identities=16%  Similarity=0.058  Sum_probs=118.9

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .....+.||||+|+..|+.+++++|++.|++++..+..|.||||+|  + .++.+++++|++.    +++++.++..|.|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~-~~~~~~v~~Ll~~----g~~~~~~d~~g~t   79 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM--M-MGSARVAELLLLH----GAEPNCADPATLT   79 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS--C-TTCHHHHHHHHTT----TCCCCCCCTTTCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--H-cCCHHHHHHHHHc----CCCCCCcCCCCCc
Confidence            4456789999999999999999999999999988899999999998  7 8899999999986    9999999999999


Q ss_pred             -HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          100 -PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       100 -~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                       |||+|+..++.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~~------------------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~  141 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGARL------------------DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN  141 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCS------------------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccC
Confidence             999999999999999999999988                  8899999999999999999999999999999998775


Q ss_pred             C
Q 041785          179 N  179 (181)
Q Consensus       179 ~  179 (181)
                      .
T Consensus       142 ~  142 (156)
T 1bi7_B          142 H  142 (156)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=183.12  Aligned_cols=136  Identities=24%  Similarity=0.270  Sum_probs=128.8

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.++++...+..|.||+|+|  +..++.++++.|++.    +++++.+|..|+||
T Consensus        82 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~~----g~~~n~~d~~g~Tp  155 (269)
T 4b93_B           82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLA--CQQGHFQVVKCLLDS----NAKPNKKDLSGNTP  155 (269)
T ss_dssp             CCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCSCCCCTTCCCH
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccc--cccChHHHHHHHHHC----CCCCCCCCCCCCCH
Confidence            356789999999999999999999999999998999999999999  999999999999986    99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                      ||+|+..|+.+++++|++.|+++                  +.++..|+||||+|+..|+.+++++|+++|++++.+++.
T Consensus       156 L~~A~~~g~~~~v~~Ll~~gadv------------------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~  217 (269)
T 4b93_B          156 LIYACSGGHHELVALLLQHGASI------------------NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKR  217 (269)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCT------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCC------------------CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            99999999999999999999988                  899999999999999999999999999999999988653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=4.7e-29  Score=171.32  Aligned_cols=136  Identities=17%  Similarity=0.090  Sum_probs=127.5

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .....|.||||+|+..|+.+++++|++.+.+++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.|
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  103 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWA--VKNNRLGIAEKLLSK----GSNVNTKDFSGKT  103 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTSCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCc
Confidence            3466799999999999999999999999999888899999999999  999999999999998    8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |||+|+..++.+++++|++.|+++                  +.+|..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  165 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANV------------------NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL  165 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS------------------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            999999999999999999999988                  88899999999999999999999999999999987764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=5.6e-29  Score=159.48  Aligned_cols=126  Identities=27%  Similarity=0.346  Sum_probs=120.6

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (181)
                      +|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH--HHcCcHHHHHHHHHc----CCCCcccCCCCCcHHHH
Confidence            478999999999999999999999999888899999999999  999999999999996    89999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785          104 AAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      |+..++.+++++|++.|+++                  +.+|..|.||+++|+..++.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADV------------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHcChHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999887                  88899999999999999999999999999986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=6.1e-29  Score=167.14  Aligned_cols=131  Identities=19%  Similarity=0.118  Sum_probs=91.6

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHH
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLA  104 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a  104 (181)
                      +.||||.|+..|+.+++++|++.+.+.+.++..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   76 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA--AAHGQIAVVEFLLQN----GADPQLLGKGRESALSLA   76 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHH--HHCCCHHHHHHHHHc----CCCCCCcCCCCCcHHHHH
Confidence            56677777777777777777776666666666777777777  777777777777665    666666677777777777


Q ss_pred             HHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          105 AKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       105 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +..++.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  133 (167)
T 3v31_A           77 CSKGYTDIVKMLLDCGVDV------------------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD  133 (167)
T ss_dssp             HHHTCHHHHHHHHHHTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHcCCHHHHHHHHHCCCCC------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            7777777777777776665                  66666677777777777777777777777776665543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=4.4e-29  Score=162.65  Aligned_cols=126  Identities=22%  Similarity=0.250  Sum_probs=118.6

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...+.||||+|+..|+.+++++|++.|.+++..+..|.||||+|  +..++.+++++|++.    +++++.++..|.|||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~d~~g~t~L   84 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA--TAHGHLEIVEVLLKN----GADVNAVDAIGFTPL   84 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTCCCHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCcCCCCCCCHH
Confidence            44578999999999999999999999999988899999999999  999999999999997    999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRED  171 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  171 (181)
                      |+|+..++.+++++|++.|+++                  +.+|..|.||||+|+..|+.+++++|+++|
T Consensus        85 ~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           85 HLAAFIGHLEIAEVLLKHGADV------------------NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC------------------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999887                  889999999999999999999999999886

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.9e-28  Score=165.14  Aligned_cols=133  Identities=24%  Similarity=0.302  Sum_probs=118.7

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      ..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   85 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA--AFNGHLEIVEVLLKN----GADVNAVDHAGMTPLR   85 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCCHHH
Confidence            3456889999999999999999999988888888999999999  999999999999886    8888999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +|+..++.+++++|++.|+++                  +.+|..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  144 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGADV------------------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK  144 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHcCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999999999999999998887                  78888899999999999999999999999999877654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.3e-28  Score=164.55  Aligned_cols=128  Identities=21%  Similarity=0.208  Sum_probs=109.0

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+. |+.+++++|++.|++++.++..|.||||+|  +..++.+++++|++.    +.+++.++..|.|||
T Consensus        35 ~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L  107 (162)
T 1ihb_A           35 NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDA--ARAGFLDTLQTLLEF----QADVNIEDNEGNLPL  107 (162)
T ss_dssp             CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHH
Confidence            4567888888888 888899988888888888888888999988  888888888888886    888888888888999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      |+|+..++.+++++|++.|++.                 ++.++..|.||||+|+..|+.+++++|+++|||
T Consensus       108 ~~A~~~~~~~~v~~Ll~~g~~~-----------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          108 HLAAKEGHLRVVEFLVKHTASN-----------------VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHcCCHHHHHHHHHccCCC-----------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999888989999998888764                 377888899999999999999999999999885

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.8e-28  Score=161.79  Aligned_cols=129  Identities=25%  Similarity=0.242  Sum_probs=109.0

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHH
Q 041785           26 DPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAA  105 (181)
Q Consensus        26 ~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~  105 (181)
                      .++|+.|+..|+.+++++|++.|.+.. .+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~   75 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLA--AQYGHFSTTEVLLRA----GVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHH--HHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHH
Confidence            578888888888888888888887654 477788888888  888888888888876    7888888888888888888


Q ss_pred             HcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          106 KYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       106 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      ..++.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        76 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  131 (153)
T 1awc_B           76 SEGHANIVEVLLKHGADV------------------NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HcChHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            888888888888888877                  77888888888888888888888888888888877654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=3.9e-28  Score=163.90  Aligned_cols=134  Identities=16%  Similarity=0.125  Sum_probs=116.0

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .....|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  104 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA--STGGYTDIVGLLLER----DVDINIYDWNGGT  104 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHTT----TCCTTCCCTTSCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHH--HHCCCHHHHHHHHHc----CCCCCCCCCCCCC
Confidence            3355788999999999999999999998888888888899999999  888899999888886    8888888888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                      |||+|+..++.+++++|++.|+++                  +.+|..|.||||+|+..|+.+++++|+++|+++...
T Consensus       105 ~L~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~  164 (172)
T 3v30_A          105 PLLYAVRGNHVKCVEALLARGADL------------------TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS  164 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc------------------cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence            999999999999999999988887                  788888999999999999999999999888876544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.2e-28  Score=166.40  Aligned_cols=131  Identities=22%  Similarity=0.175  Sum_probs=122.1

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcc-cccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHH
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIE-SSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~-~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (181)
                      +.+|||.|+..|+.+.++.|++.+.. .+..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA--SAFGEIETVRFLLEW----GADPHILAKERESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCchhhcccCCCHHHH
Confidence            46899999999999999999998876 567889999999999  999999999999997    99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          104 AAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |+..++.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  133 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDVDI------------------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD  133 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHCCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            99999999999999999888                  88999999999999999999999999999999988764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=4.8e-28  Score=162.45  Aligned_cols=132  Identities=23%  Similarity=0.354  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      .+.++||.|+..|+.++++.|++. +.+....+..|.||||+|  +..++.+++++|++.    +.+++.++..|+||||
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   80 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA--AGYNRVSVVEYLLQH----GADVHAKDKGGLVPLH   80 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH--HHcChHHHHHHHHhc----CCCCCccCCCCCCHHH
Confidence            455677777777777777777663 333334555666777777  677777777777665    6666667777777777


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +|+..++.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVV------------------NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHcCcHHHHHHHHhCCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            777777777777777776665                  66666777777777777777777777777777665543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=2.2e-27  Score=163.77  Aligned_cols=135  Identities=21%  Similarity=0.202  Sum_probs=123.4

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.   .+.+++..+..|.|||
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A--~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L  110 (201)
T 3hra_A           36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA--GAQGRTEILAYMLKH---ATPDLNKHNRYGGNAL  110 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhc---cCcccccccCCCCcHH
Confidence            45789999999999999999999999999988899999999999  999999999999966   4778999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhh-hhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCC-----HHHHHHHHHcCCCCC
Q 041785          102 HLAAKYSHFDIVRVLIERA-QLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN-----VEVVKILTREDPDYP  175 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~Ll~~g~~~~  175 (181)
                      |+|+..++.+++++|++.+ .++                  +.+|..|+||||+|+..++     .+++++|+++|++++
T Consensus       111 ~~A~~~~~~~~v~~Ll~~g~~~~------------------~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~  172 (201)
T 3hra_A          111 IPAAEKGHIDNVKLLLEDGREDI------------------DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS  172 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCCCT------------------TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCc------------------CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence            9999999999999999998 666                  7889999999999999887     899999999999998


Q ss_pred             CCcC
Q 041785          176 YSAN  179 (181)
Q Consensus       176 ~~~~  179 (181)
                      ..+.
T Consensus       173 ~~~~  176 (201)
T 3hra_A          173 IKDN  176 (201)
T ss_dssp             CCCT
T ss_pred             ccCC
Confidence            8764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.6e-27  Score=160.65  Aligned_cols=127  Identities=22%  Similarity=0.265  Sum_probs=119.9

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.|.+.+..+..|.||||+|  +..++.+++++|++.    +++++.++..|.||
T Consensus        43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~  116 (169)
T 2y1l_E           43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA--ALFGHLEIVEVLLKN----GADVNANDMEGHTP  116 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCCCCCCH
Confidence            345789999999999999999999999999988899999999999  999999999999997    99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcC
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRED  171 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  171 (181)
                      ||+|+..++.+++++|++.|+++                  +.+|..|.||+++|+..|+.+++++|++.|
T Consensus       117 L~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          117 LHLAAMFGHLEIVEVLLKNGADV------------------NAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999988                  889999999999999999999999999876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.4e-27  Score=162.27  Aligned_cols=132  Identities=14%  Similarity=0.124  Sum_probs=98.9

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +++++.++..|.|||
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~d~~g~t~L  109 (179)
T 3f6q_A           36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA--ASHGHRDIVQKLLQY----KADINAVNEHGNVPL  109 (179)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCCHH
Confidence            44567777777777777777777777777776777777777777  777777777777775    777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                      |+|+..++.+++++|++.|+++                  +.+|..|.||+++|+..++.+++++|+++|++++..
T Consensus       110 ~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~  167 (179)
T 3f6q_A          110 HYACFWGQDQVAEDLVANGALV------------------SICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI  167 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCS------------------SBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCB
T ss_pred             HHHHHcCCHHHHHHHHHCCCCc------------------chhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence            7777777777777777777776                  677777777777777777777777777777777654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3.9e-28  Score=165.06  Aligned_cols=133  Identities=23%  Similarity=0.252  Sum_probs=121.8

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      +++.++|+.|+..|+.+.+++|++. +.+.+..+..|.||||+|  +..++.+++++|++.    +++++.++..|.|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CREGRSAVVEMLIMR----GARINVMNRGDDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCCHH
Confidence            3567899999999999999999997 556667899999999999  999999999999997    999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |+|+..++.+++++|++.|+++                  +.+|..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~~~------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  136 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYKADI------------------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK  136 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhcc
Confidence            9999999999999999999988                  88999999999999999999999999999999988764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=8.2e-28  Score=160.70  Aligned_cols=131  Identities=20%  Similarity=0.189  Sum_probs=122.0

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (181)
                      ...||||.|+..|+.+++++|++.|++++..+..|.||||+|  +. ++.+++++|++.    +.+++.++..|.||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   76 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--KL-GNPEIARRLLLR----GANPDLKDRTGFAVIHD   76 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH--Hc-CcHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence            456899999999999999999999999988899999999999  88 999999999997    89999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC-CCCCcC
Q 041785          104 AAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD-YPYSAN  179 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~  179 (181)
                      |+..++.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++ ++..+.
T Consensus        77 A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  135 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQADV------------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH  135 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC
Confidence            99999999999999999887                  88999999999999999999999999999998 465543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=2.6e-27  Score=166.96  Aligned_cols=145  Identities=19%  Similarity=0.166  Sum_probs=115.0

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccc-----cccccCC
Q 041785           24 QMDPNLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALL-----LQVNAKG   97 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~g   97 (181)
                      .|.||||.|+..|+.+++++|++. |.+++.++..|.||||+|  +..++.+++++|++.    +.++     +..+..|
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g   75 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA--ALYDNLEAAMVLMEA----APELVFEPMTSELYEG   75 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----CGGGGGCCCCSTTTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CchhccccccccCCCC
Confidence            478999999999999999999997 888888999999999999  999999999999997    6655     5667899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785           98 DTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus        98 ~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                      .||||+|+..++.+++++|++.|+++..........     ...+..+..|+||||+|+..|+.+++++|+++|++++..
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  150 (232)
T 2rfa_A           76 QTALHIAVINQNVNLVRALLARGASVSARATGSVFH-----YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ  150 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS-----CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             cCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCccee-----ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            999999999999999999999998873322211000     001223346777777777777777777777777777665


Q ss_pred             cC
Q 041785          178 AN  179 (181)
Q Consensus       178 ~~  179 (181)
                      +.
T Consensus       151 d~  152 (232)
T 2rfa_A          151 DS  152 (232)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=2.6e-27  Score=166.78  Aligned_cols=154  Identities=21%  Similarity=0.194  Sum_probs=129.4

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .....|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.|
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  108 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA--ASAGXDEIVKALLVK----GAHVNAVNQNGCT  108 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHH--HHcCHHHHHHHHHHc----CCCCCCCCCCCCC
Confidence            3355788999999999999999999999988888888999999999  999999999999886    8888888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHH
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVV  164 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~  164 (181)
                      |||+|+..++.+++++|++.|.++...+..+.......               +.+++.+|..|+||||+|+..++.+++
T Consensus       109 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  188 (231)
T 3aji_A          109 PLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA  188 (231)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999999887755554444433222               134567888999999999999999999


Q ss_pred             HHHHHcCCCCCCCcC
Q 041785          165 KILTREDPDYPYSAN  179 (181)
Q Consensus       165 ~~Ll~~g~~~~~~~~  179 (181)
                      ++|+++|++++.++.
T Consensus       189 ~~Ll~~ga~~~~~~~  203 (231)
T 3aji_A          189 KFLVTQGASIYIENK  203 (231)
T ss_dssp             HHHHHTTCCSCCCCT
T ss_pred             HHHHHCCCCCCCCCC
Confidence            999999999987764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=7.9e-28  Score=161.38  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=117.7

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...+.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +++++.++..|.|||
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L  112 (165)
T 3twr_A           39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA--CSYGHYEVAELLVKH----GAVVNVADLWKFTPL  112 (165)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHH
T ss_pred             ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH--HHcCcHHHHHHHHhC----CCCCCCcCCCCCCHH
Confidence            44578999999999999999999999999998999999999999  999999999999997    999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDP  172 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~  172 (181)
                      |+|+..++.+++++|++.|+++                  +.+|..|.||+++|+. ++.+++++|+++|+
T Consensus       113 ~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          113 HEAAAKGKYEICKLLLQHGADP------------------TKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC------------------cccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999999999988                  8899999999999777 89999999999986

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=4.1e-27  Score=170.42  Aligned_cols=136  Identities=15%  Similarity=0.207  Sum_probs=125.1

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhc-ccccccCCCCchhHHHHhh-----hhhhhhHHHHHHHHHhhcccccccc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVI-ESSLTVHTKNTILHINIIC-----QETENASTKFVEEILEICPALLLQV   93 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~g~t~Lh~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~   93 (181)
                      .....|.||||+|+..|+.+++++|++.|. +.+..+..|.||||+|  +     ..++.++++.|++.    +...+..
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a--~~~~~~~~~~~~~v~~Ll~~----g~~~~~~  179 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT--ALATLKTQDDIETVLQLFRL----GNINAKA  179 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG--GGCCCCSHHHHHHHHHHHHH----SCTTCCC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH--HHHHhhhhhhHHHHHHHHHc----CCCcccc
Confidence            446679999999999999999999999997 7788899999999999  7     67889999999987    8888888


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHH-cCC
Q 041785           94 NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR-EDP  172 (181)
Q Consensus        94 ~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~  172 (181)
                      +..|+||||+|+..|+.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|++ .|+
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~------------------n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~ga  241 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADV------------------NVQDDDGSTALMCACEHGHKEIAGLLLAVPSC  241 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------------------CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence            899999999999999999999999999988                  8899999999999999999999999999 899


Q ss_pred             CCCCCcC
Q 041785          173 DYPYSAN  179 (181)
Q Consensus       173 ~~~~~~~  179 (181)
                      +++.+++
T Consensus       242 d~~~~d~  248 (276)
T 4hbd_A          242 DISLTDR  248 (276)
T ss_dssp             CTTCCCT
T ss_pred             CCcCcCC
Confidence            9988765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.6e-27  Score=160.15  Aligned_cols=130  Identities=17%  Similarity=0.210  Sum_probs=123.0

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~  105 (167)
T 3v31_A           32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLA--CSKGYTDIVKMLLDC----GVDVNEYDWNGGTP  105 (167)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTSCCH
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH--HHcCCHHHHHHHHHC----CCCCCcCCCCCCCH
Confidence            345789999999999999999999999999988899999999999  999999999999998    99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                      ||+|+..++.+++++|++.|+++                  +.++..|.||+++|+..|+.+++++|+++++++
T Consensus       106 L~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          106 LLYAVHGNHVKCVKMLLESGADP------------------TIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99999999999999999999988                  889999999999999999999999999987764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=2.7e-27  Score=162.51  Aligned_cols=126  Identities=22%  Similarity=0.164  Sum_probs=120.1

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +++++.++..|.|||
T Consensus        65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L  138 (192)
T 2rfm_A           65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS--IIFGYSEMSYFLLEH----GANVNDRNLEGETPL  138 (192)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCSSCCCTTCCCHH
T ss_pred             cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHH
Confidence            45689999999999999999999999999988999999999999  999999999999987    999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRED  171 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  171 (181)
                      |+|+..++.+++++|++.|+++                  +.+|..|.||+++|+..|+.+++++|+++|
T Consensus       139 ~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          139 IVASKYGRSEIVKKLLELGADI------------------SARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCC------------------CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999999988                  889999999999999999999999999865

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=3.8e-27  Score=174.41  Aligned_cols=155  Identities=13%  Similarity=0.111  Sum_probs=126.9

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhh---hhHHHHHHHHHhhccccccccccCC
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETE---NASTKFVEEILEICPALLLQVNAKG   97 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~g   97 (181)
                      ....|.||||+|+..|+.+++++|++.|++++.++..|.||||+|  +..++   .++++.|++.+   ..+++.++..|
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A--~~~g~~~~~~~~~~ll~~~---~~~~~~~d~~g  201 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA--VKSVNNYDSGTFEALLDYL---YPCLILEDSMN  201 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHH--HHSSHHHHTTCHHHHHHHH---GGGGGEECTTC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHhcccccHHHHHHHHHhh---hccccCCCCCC
Confidence            456799999999999999999999999999999999999999999  99888   78888888873   46789999999


Q ss_pred             CcHHHHHHH----cCCHHHHHHHHHhhh--------------------hccCCCCCCcchHHH-------HHHHhhcccC
Q 041785           98 DTPLHLAAK----YSHFDIVRVLIERAQ--------------------LAQHGDEEPESGIEA-------FRQMIRMVNN  146 (181)
Q Consensus        98 ~t~L~~a~~----~~~~~~~~~L~~~~~--------------------~~~~~~~~~~~~~~~-------~~~~~~~~~~  146 (181)
                      +||||+|+.    .++.+++++|++.+.                    ++...+..+......       ...+++.+|.
T Consensus       202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~  281 (327)
T 1sw6_A          202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  281 (327)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCC
Confidence            999999999    899999999999853                    222222222221111       1225789999


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          147 EKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       147 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                      .|+||||+|+..|+.+++++|+++|++++.+++.
T Consensus       282 ~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~  315 (327)
T 1sw6_A          282 NGDTCLNIAARLGNISIVDALLDYGADPFIANKS  315 (327)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence            9999999999999999999999999999988753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=3e-27  Score=168.95  Aligned_cols=152  Identities=20%  Similarity=0.158  Sum_probs=121.2

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccc-cccccccCCCcH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPA-LLLQVNAKGDTP  100 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~g~t~  100 (181)
                      ...|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +. +++.++..|.||
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~  127 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA--VSADAQGVFQILIRN----RATDLDARMHDGTTP  127 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHS----TTSCTTCCCTTCCCH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCccccCCCCCcH
Confidence            46788999999999999999999999988888888999999999  889999999998886    43 777778888888


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVVK  165 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~  165 (181)
                      ||+|+..++.+++++|++.|+++...+..+.......               +.+++.+|..|.||||+|+..|+.++++
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            8888888888888888888877754444444433222               1245677888888888888888888888


Q ss_pred             HHHHcCCCCCCCcC
Q 041785          166 ILTREDPDYPYSAN  179 (181)
Q Consensus       166 ~Ll~~g~~~~~~~~  179 (181)
                      +|+++|++++..+.
T Consensus       208 ~Ll~~ga~~~~~d~  221 (253)
T 1yyh_A          208 VLLDHFANRDITDH  221 (253)
T ss_dssp             HHHHTTCCTTCCCT
T ss_pred             HHHHcCCCcccccc
Confidence            88888888877654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.2e-28  Score=172.67  Aligned_cols=134  Identities=19%  Similarity=0.178  Sum_probs=125.3

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...+.||||.|+..|+.+++++|++.|++++.++..|.||||+|  +..++.+++++|++.    |++++.+|..|+|||
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A--~~~g~~~~v~~Ll~~----ga~~n~~d~~g~tpL   91 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA--ICGANYSIVDFLITA----GANVNSPDSHGWTPL   91 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHH
Confidence            44567999999999999999999999999998999999999999  999999999999997    999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhccc-CCCchHHHHH--HHcCCHHHHHHHHHcCCCCCCCc
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVN-NEKNTALHEA--VSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      |+|+..|+.+++++|++.|+++                  +.++ ..|+||||+|  +..|+.+++++|+++|++++..+
T Consensus        92 h~A~~~g~~~~v~~Ll~~ga~~------------------~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~  153 (229)
T 2vge_A           92 HCAASCNDTVICMALVQHGAAI------------------FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN  153 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCT------------------TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSG
T ss_pred             HHHHHcCCHHHHHHHHHcCCCc------------------ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccccc
Confidence            9999999999999999999988                  6765 6999999999  99999999999999999998875


Q ss_pred             C
Q 041785          179 N  179 (181)
Q Consensus       179 ~  179 (181)
                      +
T Consensus       154 ~  154 (229)
T 2vge_A          154 S  154 (229)
T ss_dssp             G
T ss_pred             C
Confidence            4

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=1.5e-27  Score=168.71  Aligned_cols=139  Identities=23%  Similarity=0.222  Sum_probs=115.9

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhc--cccccccccCCC
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEIC--PALLLQVNAKGD   98 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~g~   98 (181)
                      ....|.||||+|+..|+.+++++|++.|++++.++..|.||||+|  +..++.+++++|+......  ...++..+..|.
T Consensus        41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  118 (236)
T 1ikn_D           41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA--CEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  118 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH--HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHhcccchhHHHHhhccCCCCC
Confidence            345688999999999999999999999988888889999999999  9999999999998861100  122567788899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccC-CCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNN-EKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                      ||||+|+..++.+++++|++.|+++                  +.++. .|+||||+|+..|+.+++++|+++|++++..
T Consensus       119 t~L~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  180 (236)
T 1ikn_D          119 TCLHLASIHGYLGIVELLVSLGADV------------------NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV  180 (236)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCT------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence            9999999999999999999999887                  66776 8888888888888888888888888888776


Q ss_pred             cC
Q 041785          178 AN  179 (181)
Q Consensus       178 ~~  179 (181)
                      +.
T Consensus       181 ~~  182 (236)
T 1ikn_D          181 TY  182 (236)
T ss_dssp             CT
T ss_pred             cC
Confidence            54

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=5.9e-27  Score=164.93  Aligned_cols=150  Identities=18%  Similarity=0.220  Sum_probs=125.1

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcc-cccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIE-SSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~-~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      .+.+|||.|+..|+.+.+++++..+.. .+..+..|.||||+|  +..++.+++++|++.    +.+++.++..|+||||
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   78 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA--CSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLH   78 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH--HHcCcHHHHHHHHHh----CCCCCCcCCCCCCHHH
Confidence            467899999999999999999997654 346789999999999  999999999999997    8999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHHHHH
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVVKIL  167 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  167 (181)
                      +|+..++.+++++|++.|.++...+..+.......               +..++.++..|.||||+|+..|+.+++++|
T Consensus        79 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            99999999999999999988855554444433222               123556777888888888888888888888


Q ss_pred             HHcCCCCCCCcC
Q 041785          168 TREDPDYPYSAN  179 (181)
Q Consensus       168 l~~g~~~~~~~~  179 (181)
                      +++|++++.++.
T Consensus       159 l~~g~~~~~~~~  170 (231)
T 3aji_A          159 LFYKASTNIQDT  170 (231)
T ss_dssp             HHTTCCSCCCCT
T ss_pred             HhcCCCccccCC
Confidence            888888877654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=2.9e-27  Score=169.02  Aligned_cols=144  Identities=18%  Similarity=0.174  Sum_probs=103.0

Q ss_pred             HHHHHcCCcHHHHHHHHHhcccc-cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcC
Q 041785           30 FKAAADGSVEPFKDMAREVIESS-LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYS  108 (181)
Q Consensus        30 ~~a~~~g~~~~~~~ll~~~~~~~-~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~  108 (181)
                      ..+...++.+++++|++.|.+.+ ..+..|.||||+|  +..++.+++++|++.    +++++.++..|.||||+|+..+
T Consensus        28 ~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~  101 (253)
T 1yyh_A           28 NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSAD  101 (253)
T ss_dssp             ------------------------CCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHT
T ss_pred             chhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcC
Confidence            34778899999999999998886 4588999999999  999999999999997    9999999999999999999999


Q ss_pred             CHHHHHHHHHhhh-hccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCC
Q 041785          109 HFDIVRVLIERAQ-LAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDP  172 (181)
Q Consensus       109 ~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~  172 (181)
                      +.+++++|++.+. ++...+..+.......               +.+++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       102 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  181 (253)
T 1yyh_A          102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA  181 (253)
T ss_dssp             CHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999987 5544444444433222               23567888999999999999999999999999999


Q ss_pred             CCCCCcC
Q 041785          173 DYPYSAN  179 (181)
Q Consensus       173 ~~~~~~~  179 (181)
                      +++..+.
T Consensus       182 ~~~~~~~  188 (253)
T 1yyh_A          182 NKDMQNN  188 (253)
T ss_dssp             CTTCCCT
T ss_pred             CCCCcCC
Confidence            9988764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=7.5e-27  Score=163.58  Aligned_cols=153  Identities=19%  Similarity=0.151  Sum_probs=122.1

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.   ...+++..+..|.|||
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~L   96 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA--VSADAQGVFQILIRN---RATDLDARMHDGTTPL   96 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHB---TTSCTTCCCTTCCCHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHc---CCCCcccCCCCCCcHH
Confidence            45788999999999999999999999988888889999999999  999999999999886   2337788888899999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHHHH
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVVKI  166 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  166 (181)
                      |+|+..++.+++++|++.|+++...+..+.......               +.+++.+|..|.||||+|+..|+.+++++
T Consensus        97 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  176 (223)
T 2f8y_A           97 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV  176 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHH
Confidence            999999999999999998887754444444332221               12356777788888888888888888888


Q ss_pred             HHHcCCCCCCCcC
Q 041785          167 LTREDPDYPYSAN  179 (181)
Q Consensus       167 Ll~~g~~~~~~~~  179 (181)
                      |+++|++++..+.
T Consensus       177 Ll~~ga~~~~~~~  189 (223)
T 2f8y_A          177 LLDHFANRDITDH  189 (223)
T ss_dssp             HHHTTCCTTCCCT
T ss_pred             HHHcCCCCccccc
Confidence            8888888876654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=3.3e-27  Score=170.58  Aligned_cols=157  Identities=16%  Similarity=0.127  Sum_probs=113.1

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHh----------------
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILE----------------   84 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~----------------   84 (181)
                      ....|.||||+|+..|+.+++++|++.|++++.++..|.||||+|  +..++.+++++|++...                
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A--~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  118 (282)
T 1oy3_D           41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA--CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD  118 (282)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH--TTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCcchhHhhhccCCCCchhhHHHHhhcccc
Confidence            345678888888888888888888888888777778888888888  88888888887776310                


Q ss_pred             ---------------------------hccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCC-CcchHHH
Q 041785           85 ---------------------------ICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEE-PESGIEA  136 (181)
Q Consensus        85 ---------------------------~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~-~~~~~~~  136 (181)
                                                 ..+.+++.++..|.||||+|+..|+.+++++|++.|+++...... +..+...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  198 (282)
T 1oy3_D          119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL  198 (282)
T ss_dssp             -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHH
Confidence                                       001235666777888888888888888888888888777544322 3333222


Q ss_pred             H---------------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          137 F---------------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       137 ~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      .               +.+++.+|..|+||||+|+..|+.+++++|+++|++++.+++
T Consensus       199 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  256 (282)
T 1oy3_D          199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG  256 (282)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCC
Confidence            1               234567788888888888888888888888888888877664

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=3.7e-27  Score=165.55  Aligned_cols=152  Identities=18%  Similarity=0.189  Sum_probs=106.7

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHh--ccccc-ccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcc--ccccccccC
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREV--IESSL-TVHTKNTILHINIICQETENASTKFVEEILEICP--ALLLQVNAK   96 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~--~~~~~-~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~   96 (181)
                      ...|.||||+|+..|+.+++++|++.+  ++... .+..|.||||+|  +..++.+++++|++.    +  .+++.++..
T Consensus        33 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~~~  106 (228)
T 2dzn_A           33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA--CSVGNLEVVKSLYDR----PLKPDLNKITNQ  106 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH--HHHCCHHHHHHHHSS----SSCCCTTCCCTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCcccccCCcC
Confidence            445677777777777777777777766  44443 566677777777  777777777777664    4  666666677


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------H-HHhhcccCCCchHHHHHHHcCC
Q 041785           97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------R-QMIRMVNNEKNTALHEAVSHGN  160 (181)
Q Consensus        97 g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~g~t~l~~A~~~~~  160 (181)
                      |.||||+|+..++.+++++|++.|+++...+..+.......               + .+++.+|..|+||||+|+..|+
T Consensus       107 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~  186 (228)
T 2dzn_A          107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH  186 (228)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCC
Confidence            77777777777777777777777766644444443332221               1 2346778899999999999999


Q ss_pred             HHHHHHHH-HcCCCCCCCcC
Q 041785          161 VEVVKILT-REDPDYPYSAN  179 (181)
Q Consensus       161 ~~~~~~Ll-~~g~~~~~~~~  179 (181)
                      .+++++|+ +.|++++..++
T Consensus       187 ~~~v~~Ll~~~ga~~~~~~~  206 (228)
T 2dzn_A          187 GDAAVLLVEKYGAEYDLVDN  206 (228)
T ss_dssp             HHHHHHHHHHHCCCSCCBCT
T ss_pred             HHHHHHHHHhcCCCCCccCC
Confidence            99999999 88999988764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=2.2e-27  Score=171.25  Aligned_cols=139  Identities=14%  Similarity=0.116  Sum_probs=119.7

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccC--------------CCCchhHHHHhhhhhhhhHHHHHHH---HHh
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVH--------------TKNTILHINIICQETENASTKFVEE---ILE   84 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~--------------~g~t~Lh~a~~~~~~~~~~~~~l~~---~~~   84 (181)
                      ...|.||||+|+..|+.++++.|++.|++++..+.              .|.||||+|  +..++.+++++|++   .  
T Consensus        98 d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~--  173 (273)
T 2pnn_A           98 YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA--ACTNQLAIVKFLLQNSWQ--  173 (273)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHH--HHTTCHHHHHHHHHCSSC--
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHH--HHcCCHHHHHHHHhcccC--
Confidence            34799999999999999999999999999987776              799999999  99999999999999   7  


Q ss_pred             hccccccccccCCCcHHHHHHHcCC---------HHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHH
Q 041785           85 ICPALLLQVNAKGDTPLHLAAKYSH---------FDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA  155 (181)
Q Consensus        85 ~~~~~~~~~~~~g~t~L~~a~~~~~---------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  155 (181)
                        +++++.+|..|+||||+|+..++         .+++++|++.|+++.....           .++.+|..|+||||+|
T Consensus       174 --gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~-----------~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          174 --PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK-----------LEEITNRKGLTPLALA  240 (273)
T ss_dssp             --CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCC-----------GGGCCCTTSCCHHHHH
T ss_pred             --CCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccc-----------cccccCCCCCCHHHHH
Confidence              89999999999999999999998         7999999999998711000           0125899999999999


Q ss_pred             HHcCCHHHHHHHHHcCC-CCCCC
Q 041785          156 VSHGNVEVVKILTREDP-DYPYS  177 (181)
Q Consensus       156 ~~~~~~~~~~~Ll~~g~-~~~~~  177 (181)
                      +..|+.+++++|+++|+ |...+
T Consensus       241 ~~~g~~~iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          241 ASSGKIGVLAYILQREIHEPECR  263 (273)
T ss_dssp             HHTTCHHHHHHHHHHHTC-----
T ss_pred             HHhChHHHHHHHHHCCCCCchhh
Confidence            99999999999999999 55443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=3e-27  Score=170.75  Aligned_cols=116  Identities=14%  Similarity=0.041  Sum_probs=93.1

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccC-CCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVH-TKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      ....|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|  +..++.+++++|++.    |++++.++..|.|
T Consensus       154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A--~~~~~~~~v~~Ll~~----gad~~~~d~~g~t  227 (282)
T 1oy3_D          154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA--VEAQAASVLELLLKA----GADPTARMYGGRT  227 (282)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHH--HHcCCHHHHHHHHHc----CCCCcccccCCCC
Confidence            355788999999999999999999999999987664 499999999  999999999999997    9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCC
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN  160 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~  160 (181)
                      |||+|+..++.+++++|+++|+++                  +.++..|.||+++|....+
T Consensus       228 pL~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          228 PLGSALLRPNPILARLLRAHGAPE------------------PEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTCCC------------------CCCC---------------
T ss_pred             HHHHHHHcCCcHHHHHHHHcCCCc------------------CcCCCcccccccccCCccc
Confidence            999999999999999999999998                  8999999999999987654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=4.3e-27  Score=156.04  Aligned_cols=122  Identities=20%  Similarity=0.186  Sum_probs=116.4

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +++++.++..|.|||
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L  104 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMA--ASEGHANIVEVLLKH----GADVNAKDMLKMTAL  104 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHTT----TCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcChHHHHHHHHHc----CCCCCCCCCCCCCHH
Confidence            45689999999999999999999999999988899999999999  999999999999986    999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHH
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL  167 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  167 (181)
                      |+|+..++.+++++|++.|+++                  +.+|..|.||+++|+..|+.+++++|
T Consensus       105 ~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          105 HWATEHNHQEVVELLIKYGADV------------------HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCc------------------cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999988                  88999999999999999999999987

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=9.5e-27  Score=163.05  Aligned_cols=146  Identities=14%  Similarity=0.104  Sum_probs=88.7

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhc-ccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVI-ESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      .|.||||+|+..|+.+++++|++.+. +.+..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||
T Consensus        57 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~  130 (223)
T 2f8y_A           57 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA--ARLAVEGMLEDLINS----HADVNAVDDLGKSALH  130 (223)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCBCTTSCBHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHH--HHhCcHHHHHHHHHc----CCCCcCcCCCCCcHHH
Confidence            44555555555555555555555443 3334455555555555  555555555555554    5555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHHHHH
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVVKIL  167 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  167 (181)
                      +|+..++.+++++|++.|+++...+..+.......               +.+++.+|..|.||+++|+..++.+++++|
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  210 (223)
T 2f8y_A          131 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL  210 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHH
Confidence            55555555555555555555443333333322221               112478899999999999999999999999


Q ss_pred             HHcCCCCC
Q 041785          168 TREDPDYP  175 (181)
Q Consensus       168 l~~g~~~~  175 (181)
                      +++|+...
T Consensus       211 ~~~g~~~~  218 (223)
T 2f8y_A          211 DEYNLVRS  218 (223)
T ss_dssp             HHTTCSSC
T ss_pred             HHcCCCcc
Confidence            99998754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=8.7e-27  Score=169.90  Aligned_cols=152  Identities=22%  Similarity=0.236  Sum_probs=125.2

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...+.|+||.|+..|+.+++++|++.|++++..+..|.||||+|  +..|+.+++++|++.    |++++.++..|.|||
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~tpL  110 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVEN----GANINQPDNEGWIPL  110 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCcHH
Confidence            44567899999999999999999999988888888999999999  899999999999886    888999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCC---------------------------------------------------
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEP---------------------------------------------------  130 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~---------------------------------------------------  130 (181)
                      |+|+..|+.+++++|++.|+++...+..+                                                   
T Consensus       111 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (299)
T 1s70_B          111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence            99999999999999999887664322211                                                   


Q ss_pred             ---------cchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          131 ---------ESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       131 ---------~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                               .......               +.+++.+|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  263 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCC
Confidence                     1111111               134678899999999999999999999999999999988764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=1.8e-26  Score=162.65  Aligned_cols=131  Identities=22%  Similarity=0.178  Sum_probs=120.0

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhccc-----ccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccccccccc
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIES-----SLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNA   95 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~-----~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   95 (181)
                      ....|.||||+|+..|+.+++++|++.+.+.     ...+..|.||||+|  +..++.+++++|++.    +++++.++.
T Consensus        33 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~  106 (232)
T 2rfa_A           33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA--VINQNVNLVRALLAR----GASVSARAT  106 (232)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH--HHcCCHHHHHHHHhC----CCCCCcccC
Confidence            3567899999999999999999999998876     45677899999999  999999999999997    888887765


Q ss_pred             -------------CCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHH
Q 041785           96 -------------KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVE  162 (181)
Q Consensus        96 -------------~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  162 (181)
                                   .|.||||+|+..|+.+++++|++.|+++                  +.+|..|+||||+|+..++.+
T Consensus       107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------------------~~~d~~g~t~L~~A~~~~~~~  168 (232)
T 2rfa_A          107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI------------------RAQDSLGNTVLHILILQPNKT  168 (232)
T ss_dssp             SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHTCSCHH
T ss_pred             CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHcCChH
Confidence                         7999999999999999999999999988                  899999999999999999999


Q ss_pred             HH----HHHHHcCCCCC
Q 041785          163 VV----KILTREDPDYP  175 (181)
Q Consensus       163 ~~----~~Ll~~g~~~~  175 (181)
                      ++    ++|+++|++..
T Consensus       169 ~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          169 FACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             HHHHHHHHHHHTTCSCS
T ss_pred             HHHHHHHHHHhcCCchh
Confidence            88    99999999874

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=5e-27  Score=167.87  Aligned_cols=135  Identities=17%  Similarity=0.143  Sum_probs=119.9

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCC-------------CCchhHHHHhhhhhhhhHHHHHHH---HHhhc
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHT-------------KNTILHINIICQETENASTKFVEE---ILEIC   86 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-------------g~t~Lh~a~~~~~~~~~~~~~l~~---~~~~~   86 (181)
                      ..|.||||+|+..|+.++++.|++.|++++..+..             |.||||+|  +..++.+++++|++   .    
T Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~~~~~~v~~Ll~~~~~----  161 (256)
T 2etb_A           88 YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLA--ACTKQWDVVTYLLENPHQ----  161 (256)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHH--HHTTCHHHHHHHHHCSSC----
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHH--HHcCCHHHHHHHHhcccc----
Confidence            56999999999999999999999999999877776             99999999  99999999999999   7    


Q ss_pred             cccccccccCCCcHHHHHHH--cCCHH-------HHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHH
Q 041785           87 PALLLQVNAKGDTPLHLAAK--YSHFD-------IVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVS  157 (181)
Q Consensus        87 ~~~~~~~~~~g~t~L~~a~~--~~~~~-------~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~  157 (181)
                      |++++.+|..|+||||+|+.  .++.+       ++++|++.|+++....           ...+.+|..|+||||+|+.
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~-----------~~~~~~d~~g~tpL~~A~~  230 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV-----------QLEEISNHQGLTPLKLAAK  230 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC-----------CGGGCCCTTSCCHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc-----------ccccccCCCCCCHHHHHHH
Confidence            89999999999999999999  78888       9999999998761100           0016789999999999999


Q ss_pred             cCCHHHHHHHHHcCCCC
Q 041785          158 HGNVEVVKILTREDPDY  174 (181)
Q Consensus       158 ~~~~~~~~~Ll~~g~~~  174 (181)
                      .|+.+++++|+++|++.
T Consensus       231 ~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          231 EGKIEIFRHILQREFSG  247 (256)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHhCCCCC
Confidence            99999999999998754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=2.6e-27  Score=169.65  Aligned_cols=136  Identities=13%  Similarity=0.134  Sum_probs=120.5

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhccccccc--------------CCCCchhHHHHhhhhhhhhHHHHHHH---HHhh
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTV--------------HTKNTILHINIICQETENASTKFVEE---ILEI   85 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~--------------~~g~t~Lh~a~~~~~~~~~~~~~l~~---~~~~   85 (181)
                      ..|.||||+|+..|+.++++.|++.|++++..+              ..|.||||+|  +..++.+++++|++   .   
T Consensus        91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~---  165 (260)
T 3jxi_A           91 YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA--ACTNQPHIVHYLTENGHK---  165 (260)
T ss_dssp             EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHH--HHTTCHHHHHHHHHCSSC---
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHH--HHcCCHHHHHHHHhcccc---
Confidence            378999999999999999999999999998777              6899999999  99999999999999   7   


Q ss_pred             ccccccccccCCCcHHHHHHHcCC---------HHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHH
Q 041785           86 CPALLLQVNAKGDTPLHLAAKYSH---------FDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV  156 (181)
Q Consensus        86 ~~~~~~~~~~~g~t~L~~a~~~~~---------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  156 (181)
                       +++++.+|..|+||||+|+..++         .+++++|++.|+++.....           ..+.+|..|+||||+|+
T Consensus       166 -ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~-----------~~~~~d~~g~tpL~~A~  233 (260)
T 3jxi_A          166 -QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN-----------LEALLNNDGLSPLMMAA  233 (260)
T ss_dssp             -CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC-----------GGGCCCTTSCCHHHHHH
T ss_pred             -CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc-----------hhhcccCCCCCHHHHHH
Confidence             89999999999999999998887         7899999999988611100           01568999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCC
Q 041785          157 SHGNVEVVKILTREDPDYP  175 (181)
Q Consensus       157 ~~~~~~~~~~Ll~~g~~~~  175 (181)
                      ..|+.+++++|+++|++..
T Consensus       234 ~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          234 KTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhCCCcc
Confidence            9999999999999987643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.9e-26  Score=167.63  Aligned_cols=155  Identities=18%  Similarity=0.116  Sum_probs=131.9

Q ss_pred             CCchhhcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccc
Q 041785           15 DSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVN   94 (181)
Q Consensus        15 ~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   94 (181)
                      ..........|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|  +..++.+++++|++.    +++++.++
T Consensus        49 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~  122 (285)
T 3d9h_A           49 SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA--CLGGHLSCVKILLKH----GAQVNGVT  122 (285)
T ss_dssp             CCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCSSCCC
T ss_pred             hCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHCCcHHHHHHHHHC----CCCCCCCC
Confidence            333445677899999999999999999999999999988999999999999  999999999999997    89999999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcC
Q 041785           95 AKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHG  159 (181)
Q Consensus        95 ~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~  159 (181)
                      ..|.||||+|+..++.+++++|++.|+++..... +.......               +.+++.+|..|+||||+|+..|
T Consensus       123 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~  201 (285)
T 3d9h_A          123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ  201 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCT-TSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999999999999999987743222 22221111               1345678889999999999999


Q ss_pred             CHHHHHHHHHcCCCCCC
Q 041785          160 NVEVVKILTREDPDYPY  176 (181)
Q Consensus       160 ~~~~~~~Ll~~g~~~~~  176 (181)
                      +.+++++|+++|++++.
T Consensus       202 ~~~~v~~Ll~~ga~~~~  218 (285)
T 3d9h_A          202 QRACVKKLLESGADVNQ  218 (285)
T ss_dssp             CHHHHHHHHHTTCCTTC
T ss_pred             cHHHHHHHHHCCCCCCC
Confidence            99999999999999874

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=3.1e-26  Score=162.04  Aligned_cols=156  Identities=17%  Similarity=0.141  Sum_probs=125.5

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.....+.+++..+..|.|||
T Consensus        43 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L  120 (241)
T 1k1a_A           43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA--CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL  120 (241)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH--HHcCCHHHHHHHHHcCCCccccccccCcCCCcHH
Confidence            45688999999999999999999999988888888999999999  8999999999998872211227788888899999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCC-CCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHHH
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGD-EEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVVK  165 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~  165 (181)
                      |+|+..++.+++++|++.|.++...+ ..+.......               +.+++.+|..|+||||+|+..|+.++++
T Consensus       121 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999888775444 2333332221               2346778889999999999999999999


Q ss_pred             HHHHcCCCCCCCcC
Q 041785          166 ILTREDPDYPYSAN  179 (181)
Q Consensus       166 ~Ll~~g~~~~~~~~  179 (181)
                      +|+++|++++..+.
T Consensus       201 ~Ll~~ga~~~~~~~  214 (241)
T 1k1a_A          201 TLVRSGADSSLKNC  214 (241)
T ss_dssp             HHHHTTCCTTCCCT
T ss_pred             HHHhcCCCCCCcCC
Confidence            99999999887764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=1.1e-26  Score=168.81  Aligned_cols=148  Identities=14%  Similarity=0.081  Sum_probs=82.4

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      ..|.||||+|+..|+.+++++|++.|++++..  +|.||||+|  +..++.+++++|++.    |++++.++..|+||||
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQA--ATLEDTKIVKILLFS----GLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHH--TTSSSCHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCcCCCCCcHHH
Confidence            34555555555555555555555555554333  355555555  555555555555554    5555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCC-c-----------------------------chHHHH---------------
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEP-E-----------------------------SGIEAF---------------  137 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~-~-----------------------------~~~~~~---------------  137 (181)
                      +|+..|+.+++++|++.|+++...+..+ .                             .+.+++               
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L  180 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL  180 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence            5555555555555555555443222222 1                             111111               


Q ss_pred             ---HHHhhcccCCCchH-HHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          138 ---RQMIRMVNNEKNTA-LHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       138 ---~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                         +.+++.++..|+|| ||+|+..|+.+++++|+++|++++..+
T Consensus       181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred             HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence               34566777777776 777777777777777777777776654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.1e-26  Score=154.29  Aligned_cols=124  Identities=18%  Similarity=0.138  Sum_probs=116.0

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+ +..|+.+++++|++.|++++.++..|.||||+|  +..++.+++++|++.    |++++.++..|.||
T Consensus        32 ~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~  104 (156)
T 1bd8_A           32 LNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDA--ARTGFLDTLKVLVEH----GADVNVPDGTGALP  104 (156)
T ss_dssp             CCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCSCCCCTTSCCH
T ss_pred             cCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCcH
Confidence            34568999999 999999999999999999998999999999999  999999999999997    89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHc
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE  170 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  170 (181)
                      ||+|+..++.+++++|++. +++                  +.+|..|.|||++|+..|+.+++++|+++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~-~~~------------------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          105 IHLAVQEGHTAVVSFLAAE-SDL------------------HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHTT-SCT------------------TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHhChHHHHHHHHhc-cCC------------------CCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999998 666                  88999999999999999999999999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=4e-26  Score=169.38  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=34.6

Q ss_pred             hhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          141 IRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       141 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      ++.+|..|+||||+|+..|+.+++++|+++|++++..++
T Consensus       273 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~  311 (351)
T 3utm_A          273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL  311 (351)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC
Confidence            478889999999999999999999999999999888765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=2.2e-26  Score=162.56  Aligned_cols=153  Identities=18%  Similarity=0.225  Sum_probs=120.4

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|  +..++.+++++|++.   .+.+++..+..|.|||
T Consensus        41 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L  115 (237)
T 3b7b_A           41 SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA--AKKGHYEVVQYLLSN---GQMDVNCQDDGGWTPM  115 (237)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH--HHTTCHHHHHHHHTT---TCCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH--HHcCCHHHHHHHHhC---CCCCcccCCCCCCCHH
Confidence            34677888888888888888888888887777788888888888  888888888888776   2267777788888888


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHHHH
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVVKI  166 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~  166 (181)
                      |+|+..++.+++++|++.|+++...+..+.......               +.+++.+|..|.||||+|+..++.+++++
T Consensus       116 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  195 (237)
T 3b7b_A          116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL  195 (237)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH
Confidence            888888888888888888877755544444433222               13457788899999999999999999999


Q ss_pred             HHHcCCCCCCCcC
Q 041785          167 LTREDPDYPYSAN  179 (181)
Q Consensus       167 Ll~~g~~~~~~~~  179 (181)
                      |+++|++++.++.
T Consensus       196 Ll~~gad~~~~d~  208 (237)
T 3b7b_A          196 FLSRDSDVTLKNK  208 (237)
T ss_dssp             HHTTTCCTTCCCT
T ss_pred             HHHcCCCCCccCC
Confidence            9999999987764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=5.4e-26  Score=160.78  Aligned_cols=154  Identities=16%  Similarity=0.196  Sum_probs=126.2

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHH----HhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccccccccc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAR----EVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNA   95 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~----~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   95 (181)
                      .....|.||||+|+..|+.+++++|++    .+.+.+..+..|.||||+|  +..++.+++++|++.    +.+++.++.
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~   77 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA--VITTLPSVVRLLVTA----GASPMALDR   77 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCT
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH--HHcCCHHHHHHHHHc----CCCccccCC
Confidence            345689999999999999999999997    5777778899999999999  999999999999997    899999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhh----hccCCCCCCcchHHHH---------------HHHhhccc-CCCchHHHHH
Q 041785           96 KGDTPLHLAAKYSHFDIVRVLIERAQ----LAQHGDEEPESGIEAF---------------RQMIRMVN-NEKNTALHEA  155 (181)
Q Consensus        96 ~g~t~L~~a~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~g~t~l~~A  155 (181)
                      .|.||||+|+..++.+++++|++.+.    ++...+..+.......               +.+++..+ ..|.||||+|
T Consensus        78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA  157 (241)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Confidence            99999999999999999999999987    4433333333332221               12344555 6789999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          156 VSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       156 ~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +..|+.+++++|+++|++++..+.
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~  181 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGANVNAQMY  181 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCBCT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999999999999999999887654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=9.6e-28  Score=156.38  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=116.5

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|  +..++.+++++|++.    +.+++.++..|.||
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA--CNHGHLKVVELLLQH----KALVNTTGYQNDSP   79 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCGGGCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCcccCcCCCCCCH
Confidence            345789999999999999999999999999988999999999999  999999999999987    99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      ||+|+..++.+++++|++.|+++                  +.+|..|.||+++|+..+..+++++|.+.+..
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASR------------------NAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            99999999999999999999988                  89999999999999999999998888776554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=1.2e-26  Score=172.25  Aligned_cols=153  Identities=16%  Similarity=0.133  Sum_probs=131.5

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +++++..+..|.||
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~iv~~Ll~~----g~~~~~~~~~g~t~  127 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA--CSYGHYEVTELLLKH----GACVNAMDLWQFTP  127 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH--HHCCCHHHHHHHHHC----CCCCCCCCCCCCCH
Confidence            345689999999999999999999999999998999999999999  999999999999997    99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcch-----------------------------------------------
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESG-----------------------------------------------  133 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~-----------------------------------------------  133 (181)
                      ||+|+..++.+++++|++.|+++...+..+...                                               
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  207 (351)
T 3utm_A          128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ  207 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccC
Confidence            999999999999999999988764333222111                                               


Q ss_pred             -------HH------------HH------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          134 -------IE------------AF------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       134 -------~~------------~~------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                             ..            ..      +.+++.++..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       208 ~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~  278 (351)
T 3utm_A          208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS  278 (351)
T ss_dssp             TTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence                   00            01      124567889999999999999999999999999999988764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=3.5e-26  Score=161.52  Aligned_cols=154  Identities=23%  Similarity=0.248  Sum_probs=126.4

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .....|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.|
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t   79 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEA--AENNHLEAVKYLIKA----GALVDPKDAEGST   79 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHTT----TCCCCCCCTTSCC
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHH--HHhCCHHHHHHHHhC----CCCCCCCCCCCCc
Confidence            3456789999999999999999999999999988899999999999  999999999999986    8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhh-hhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHH
Q 041785          100 PLHLAAKYSHFDIVRVLIERA-QLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEV  163 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~  163 (181)
                      |||+|+..++.+++++|++.+ .++...+..+.......               +.+++.++..|.||||+|+..|+.++
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence            999999999999999999998 45533333333322221               12345667778888888888888888


Q ss_pred             HHHHHHcCCCCCCCcC
Q 041785          164 VKILTREDPDYPYSAN  179 (181)
Q Consensus       164 ~~~Ll~~g~~~~~~~~  179 (181)
                      +++|+++|++++..+.
T Consensus       160 ~~~Ll~~g~~~~~~~~  175 (237)
T 3b7b_A          160 AEILLAAKCDLHAVNI  175 (237)
T ss_dssp             HHHHHTTTCCTTCCCT
T ss_pred             HHHHHHcCCCCCCcCC
Confidence            8888888888776653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=3.6e-26  Score=160.51  Aligned_cols=149  Identities=15%  Similarity=0.187  Sum_probs=120.5

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcccc-cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcc--ccccc-cccCCCcH
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESS-LTVHTKNTILHINIICQETENASTKFVEEILEICP--ALLLQ-VNAKGDTP  100 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~-~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~--~~~~~-~~~~g~t~  100 (181)
                      |.||||.|+..|+.+++++|++.+.+.. ..+..|.||||+|  +..++.+++++|++.    +  .+++. .+..|.||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~~~~g~t~   75 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS--VSFQAHEITSFLLSK----MENVNLDDYPDDSGWTP   75 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----CTTCCGGGCCCTTSCCH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH--HHcCCHHHHHHHHhc----cccccccccCCCCCCCH
Confidence            5799999999999999999999988776 4789999999999  999999999999997    6  55555 77899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhh--hhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERA--QLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEV  163 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~  163 (181)
                      ||+|+..++.+++++|++.|  .++...+..+.......               +.+++.++..|+||||+|+..|+.++
T Consensus        76 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  155 (228)
T 2dzn_A           76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL  155 (228)
T ss_dssp             HHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999998  55544444443332221               13456677788888888888888888


Q ss_pred             HHHHHHcC-CCCCCCcC
Q 041785          164 VKILTRED-PDYPYSAN  179 (181)
Q Consensus       164 ~~~Ll~~g-~~~~~~~~  179 (181)
                      +++|+++| ++++..+.
T Consensus       156 v~~Ll~~g~~~~~~~d~  172 (228)
T 2dzn_A          156 IELLCGLGKSAVNWQDK  172 (228)
T ss_dssp             HHHHHTTTCCCSCCCCT
T ss_pred             HHHHHhcCcccccCcCC
Confidence            88888888 77776653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=3.2e-26  Score=175.15  Aligned_cols=132  Identities=20%  Similarity=0.271  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (181)
                      .|.||||+|+..|+.+++++|++.+++.+..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+
T Consensus       244 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~  317 (437)
T 1n11_A          244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV--AQEGHVPVADVLIKH----GVMVDATTRMGYTPLHV  317 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCSSCCCHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhC----CccCCCCCCCCCCHHHH
Confidence            455666666666666666666666655555566666666666  666666666666665    66666666666666666


Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          104 AAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |+..|+.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       318 A~~~g~~~~v~~Ll~~gad~------------------n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~  375 (437)
T 1n11_A          318 ASHYGNIKLVKFLLQHQADV------------------NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  375 (437)
T ss_dssp             HHHSSCSHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             HHHcCcHHHHHHHHhcCCCC------------------CCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCC
Confidence            66666666666666666655                  88899999999999999999999999999999988764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=3.7e-26  Score=166.08  Aligned_cols=132  Identities=14%  Similarity=0.102  Sum_probs=91.6

Q ss_pred             HcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHH
Q 041785           34 ADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIV  113 (181)
Q Consensus        34 ~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  113 (181)
                      ...+...+..++..+ +.+.+|..|.||||+|  +..|+.+++++|++.    +++++..  .|+||||+|+..|+.+++
T Consensus         8 ~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~--~g~t~L~~A~~~g~~~~v   78 (285)
T 3kea_A            8 NTWKSKQLKSFLSSK-DTFKADVHGHSASYYA--IADNNVRLVCTLLNA----GALKNLL--ENEFPLHQAATLEDTKIV   78 (285)
T ss_dssp             GGCCHHHHHHHHHST-TTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TGGGSCC--TTCCHHHHHTTSSSCHHH
T ss_pred             HhcCHHHHHHHHHhC-CCCccCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCC--CCCCHHHHHHHcCCHHHH
Confidence            445566666666543 4567899999999999  999999999999997    8888887  489999999999999999


Q ss_pred             HHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCC-chHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785          114 RVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEK-NTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus       114 ~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                      ++|++.|+++...+..+..+....               +.+++.++..| .||||+|+..|+.+++++|+++|++.
T Consensus        79 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           79 KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            999999998843333333222111               12344444444 45555555555555555555555443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=6e-27  Score=166.17  Aligned_cols=133  Identities=18%  Similarity=0.207  Sum_probs=113.2

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      ..+.||||.|+..|+.++++.|++.|++++.++..|.||||+|  +..++.+++++|++.    +++++.+|..|+||||
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~d~~g~tpL~  108 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA--VCAGHTEIVKFLVQF----GVNVNAADSDGWTPLH  108 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHH
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCCHHH
Confidence            4567889999999999999999988888888888899999999  888899999988887    8888888889999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCc-hHHHHH--HHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN-TALHEA--VSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +|+..++.+++++|++.|+++                  +.++..|. ||+|+|  +..|+.+++++|+++|++++..++
T Consensus       109 ~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~  170 (239)
T 1ycs_B          109 CAASCNNVQVCKFLVESGAAV------------------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK  170 (239)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT------------------TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGG
T ss_pred             HHHHcCCHHHHHHHHHcCCCc------------------ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccccccc
Confidence            999999999999999988887                  77776666 999988  677888999999998888876654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=7.4e-26  Score=164.98  Aligned_cols=119  Identities=23%  Similarity=0.246  Sum_probs=99.1

Q ss_pred             cCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchH
Q 041785           55 VHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGI  134 (181)
Q Consensus        55 ~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  134 (181)
                      +..|.||||+|  +..|+.++++.|++.    +.+++..+..|.||||+|+..|+.+++++|++.|+++...+..+..+.
T Consensus        37 ~~~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL  110 (299)
T 1s70_B           37 KFDDGAVFLAA--CSSGDTEEVLRLLER----GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL  110 (299)
T ss_dssp             EECHHHHHHHH--HHHTCHHHHHHHHHH----CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCccHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            56789999999  999999999999997    899999999999999999999999999999999998866555555443


Q ss_pred             HHH---------HHH------hh---------------------------------------------------------
Q 041785          135 EAF---------RQM------IR---------------------------------------------------------  142 (181)
Q Consensus       135 ~~~---------~~~------~~---------------------------------------------------------  142 (181)
                      ...         ..+      ++                                                         
T Consensus       111 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (299)
T 1s70_B          111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence            322         000      00                                                         


Q ss_pred             ---cccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          143 ---MVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       143 ---~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                         ..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~  230 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence               1345789999999999999999999999999988764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2.6e-27  Score=168.02  Aligned_cols=131  Identities=18%  Similarity=0.057  Sum_probs=93.8

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (181)
                      .|.||||.|+..|+.+.++.|++.|.+.+. +..|.||||+|  +..|+.++++.|++.    +.+++.++..|.||||+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDS--SLEGEFDLVQRIIYE----VDDPSLPNDEGITALHN   76 (239)
T ss_dssp             ----------------------------------CHHHHHHH--HHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHH
Confidence            589999999999999999999999988875 46789999999  999999999999986    88999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          104 AAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |+..|+.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++..++
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~------------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  134 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNV------------------NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY  134 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             HHHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecC
Confidence            99999999999999999988                  89999999999999999999999999999999987764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=9.8e-27  Score=166.36  Aligned_cols=130  Identities=22%  Similarity=0.211  Sum_probs=119.2

Q ss_pred             cccCCCHHHHHHHHc---CCcHHHHHHHHHhccccc-----------ccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhc
Q 041785           21 KQSQMDPNLFKAAAD---GSVEPFKDMAREVIESSL-----------TVHTKNTILHINIICQETENASTKFVEEILEIC   86 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~-----------~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~   86 (181)
                      ....|.||||+|+..   |+.+++++|++.|++.+.           .+..|.||||+|  +..++.+++++|++.    
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----  112 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIA--IEKRSLQCVKLLVEN----  112 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHH--HHTTCHHHHHHHHHT----
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHH--HHcCCHHHHHHHHHc----
Confidence            456799999999999   999999999998877652           236799999999  999999999999997    


Q ss_pred             cccccccccC-------------CCcHHHHHHHcCCHHHHHHHHH---hhhhccCCCCCCcchHHHHHHHhhcccCCCch
Q 041785           87 PALLLQVNAK-------------GDTPLHLAAKYSHFDIVRVLIE---RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNT  150 (181)
Q Consensus        87 ~~~~~~~~~~-------------g~t~L~~a~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  150 (181)
                      |++++.++..             |.||||+|+..|+.+++++|++   .|+++                  +.+|..|+|
T Consensus       113 ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~------------------n~~d~~g~T  174 (256)
T 2etb_A          113 GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL------------------EATDSLGNT  174 (256)
T ss_dssp             TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT------------------TCCCTTSCC
T ss_pred             CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc------------------CccCCCCCC
Confidence            8999998876             9999999999999999999999   88888                  899999999


Q ss_pred             HHHHHHH--cCCHH-------HHHHHHHcCCCC
Q 041785          151 ALHEAVS--HGNVE-------VVKILTREDPDY  174 (181)
Q Consensus       151 ~l~~A~~--~~~~~-------~~~~Ll~~g~~~  174 (181)
                      |||+|+.  .++.+       ++++|+++|+++
T Consensus       175 pLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          175 VLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            9999999  78888       999999999998

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.94  E-value=1.4e-27  Score=167.47  Aligned_cols=135  Identities=22%  Similarity=0.202  Sum_probs=114.6

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+..|+.++++.|++.|++++.++..|.||||+|  +..++.+++++|+..   .+++++.++..|+|||
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA--CHGGHKDIVEMLFTQ---PNIELNQQNKLGDTAL  144 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHH--HHcCCHHHHHHHHcC---CCCCccccCCCCCCHH
Confidence            44678999999999999999999999999988899999999999  999999999999874   4889999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |+|+..|+.+++++|++.|+++                  +.+|..|.|||++|+..++.++++.|++.|+.....+.
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGART------------------DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS------------------CCCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC------------------ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence            9999999999999999999998                  88999999999999999999999999999999877653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=2.2e-26  Score=172.31  Aligned_cols=38  Identities=21%  Similarity=0.157  Sum_probs=24.4

Q ss_pred             hcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          142 RMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       142 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +.+|..|+||||+|+..|+.+++++|+++|++++..++
T Consensus       205 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~  242 (364)
T 3ljn_A          205 DYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN  242 (364)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            55566666666666666666666666666666665543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=3.2e-26  Score=171.42  Aligned_cols=130  Identities=18%  Similarity=0.136  Sum_probs=123.6

Q ss_pred             cccCCCHHHHHHHHcC--CcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccc-----cccc
Q 041785           21 KQSQMDPNLFKAAADG--SVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPAL-----LLQV   93 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~   93 (181)
                      ....|.||||+|+..|  +.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +++     ++.+
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~~~  207 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRA--MEFRNREALDLMMDT----VPSKSSLRLDYA  207 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----CSCSSSCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHhc----cccccccccccc
Confidence            4567899999999999  99999999999999999999999999999  999999999999998    777     9999


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785           94 NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus        94 ~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      +..|+||||+|+..|+.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       208 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~------------------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          208 NKQGNSHLHWAILINWEDVAMRFVEMGIDV------------------NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             CTTCCCTTHHHHTTTCHHHHHHHHTTTCCT------------------TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence            999999999999999999999999999998                  89999999999999999999999999999877


Q ss_pred             C
Q 041785          174 Y  174 (181)
Q Consensus       174 ~  174 (181)
                      +
T Consensus       270 ~  270 (364)
T 3ljn_A          270 F  270 (364)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=1e-25  Score=162.66  Aligned_cols=133  Identities=21%  Similarity=0.208  Sum_probs=123.5

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhh----hhHHHHHHHHHhhccccccccccC
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINIICQETE----NASTKFVEEILEICPALLLQVNAK   96 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~   96 (181)
                      ...|.||||.|+..|+.+++++|++. +.+++..+..|.||||+|  +..++    .+++++|++.    +.+++.++..
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~i~~~Ll~~----g~~~~~~~~~  218 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA--LLSSDDSDVEAITHLLLDH----GADVNVRGER  218 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH--HHCSCTTTHHHHHHHHHHT----TCCSSCCCTT
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH--HHccccchHHHHHHHHHHc----CCCCCCcCCC
Confidence            45688999999999999999999997 888888899999999999  88888    7777777776    9999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH-hhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 041785           97 GDTPLHLAAKYSHFDIVRVLIE-RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP  175 (181)
Q Consensus        97 g~t~L~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  175 (181)
                      |.||||+|+..++.+++++|++ .|.++                  +.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       219 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~------------------~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          219 GKTPLILAVEKKHLGLVQRLLEQEHIEI------------------NDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCCCc------------------cccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            9999999999999999999999 78777                  8899999999999999999999999999999999


Q ss_pred             CCc
Q 041785          176 YSA  178 (181)
Q Consensus       176 ~~~  178 (181)
                      .++
T Consensus       281 ~~d  283 (285)
T 1wdy_A          281 CGD  283 (285)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=3.6e-26  Score=161.58  Aligned_cols=130  Identities=15%  Similarity=0.134  Sum_probs=120.7

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcc------cccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccccccccc
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIE------SSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNA   95 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~------~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   95 (181)
                      ...|.||||+|+..|+.++++.|++.+.+      ....+..|.||||+|  +..++.+++++|++.    +++++.++.
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~  148 (236)
T 1ikn_D           75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA--SIHGYLGIVELLVSL----GADVNAQEP  148 (236)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCC
Confidence            45789999999999999999999998764      345788899999999  999999999999998    999999997


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785           96 -KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus        96 -~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                       .|.||||+|+..++.+++++|++.|+++                  +.+|..|.|||++|+..++.+++++|+++|++.
T Consensus       149 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          149 CNGRTALHLAVDLQNPDLVSLLLKCGADV------------------NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCS------------------CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------------CcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence             9999999999999999999999999998                  889999999999999999999999999999975


Q ss_pred             C
Q 041785          175 P  175 (181)
Q Consensus       175 ~  175 (181)
                      .
T Consensus       211 ~  211 (236)
T 1ikn_D          211 L  211 (236)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.6e-25  Score=162.74  Aligned_cols=152  Identities=15%  Similarity=0.129  Sum_probs=120.5

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +.+++..+ .|.||
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~-~g~t~  160 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA--CVSGSWDCVNLLLQH----GASVQPES-DLASP  160 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCSSCSC-TTSCH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCHHHHHHHHHHC----CCCCCCCC-CCCCH
Confidence            345688999999999999999999998888888888899999999  888899999888886    66666543 47888


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------H------HHhhcccCCCchHHHHHHHcCCHHHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------R------QMIRMVNNEKNTALHEAVSHGNVEVVK  165 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------~------~~~~~~~~~g~t~l~~A~~~~~~~~~~  165 (181)
                      ||+|+..|+.+++++|++.|+++...+..+.......         +      .+++ .+..|+||||+|+..++.++++
T Consensus       161 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHH
Confidence            8888888888888888888777655554444433222         1      1234 3788999999999999999999


Q ss_pred             HHHHcCCCCCCCcCC
Q 041785          166 ILTREDPDYPYSANN  180 (181)
Q Consensus       166 ~Ll~~g~~~~~~~~~  180 (181)
                      +|+++|++++.+++.
T Consensus       240 ~Ll~~gad~~~~d~~  254 (285)
T 3d9h_A          240 LLMDFGADTQAKNAE  254 (285)
T ss_dssp             HHHHTTCCTTCCCTT
T ss_pred             HHHHCCCCCCCcCCC
Confidence            999999999987753

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.3e-25  Score=149.17  Aligned_cols=129  Identities=22%  Similarity=0.250  Sum_probs=118.1

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHH
Q 041785           25 MDPNLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (181)
                      +.|+||.|+..|+.+.+++|++. +.+++..+..|.||||+|   ..++.+++++|++.    |.+++.++..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~~---~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM---MFGSTAIALELLKQ----GASPNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHS---CTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHHH---HcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHH
Confidence            35899999999999999999997 336677899999999994   56899999999987    99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          104 AAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |+..|+.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++ ++++..+.
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~  131 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADV------------------NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA  131 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCS------------------CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT
T ss_pred             HHHcCcHHHHHHHHHcCCCC------------------CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC
Confidence            99999999999999999887                  88899999999999999999999999999 88887764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=4.2e-27  Score=161.04  Aligned_cols=133  Identities=10%  Similarity=-0.009  Sum_probs=115.3

Q ss_pred             cCCCHHHHHHHHcCCc----HHHHHHHHHhcccccccCCCCchhHHHHhhhhhh------hhHHHHHHHHHhhccccccc
Q 041785           23 SQMDPNLFKAAADGSV----EPFKDMAREVIESSLTVHTKNTILHINIICQETE------NASTKFVEEILEICPALLLQ   92 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~----~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~------~~~~~~l~~~~~~~~~~~~~   92 (181)
                      ..|.||||+|+..|+.    +++++|++.|++++.++..|.||||+|  +..++      .+++++|++.    |++++.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a--~~~~~~~~~~~~~iv~~Ll~~----Gadin~  109 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL--FQGGGNDITGTTELCKIFLEK----GADITA  109 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH--HHHCTTCHHHHHHHHHHHHHT----TCCSSS
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH--HHcCCcchhhHHHHHHHHHHC----CCCCCc
Confidence            4689999999999975    489999999999999999999999999  77765      4677888876    999999


Q ss_pred             cccCCC-cHHHHHHHcC-----CHHHHHHHHH-hhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHH
Q 041785           93 VNAKGD-TPLHLAAKYS-----HFDIVRVLIE-RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVK  165 (181)
Q Consensus        93 ~~~~g~-t~L~~a~~~~-----~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  165 (181)
                      +|..|. ||||+|+..+     ..+++++|++ .|+++                  +.+|..|.||||+|++.|+.++++
T Consensus       110 ~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~------------------~~~d~~G~TpL~~A~~~~~~~~v~  171 (186)
T 3t8k_A          110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL------------------LIKDKWGLTALEFVKRCQKPIALK  171 (186)
T ss_dssp             CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT------------------TCCCTTSCCHHHHHHTTTCHHHHH
T ss_pred             cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC------------------cccCCCCCCHHHHHHHcCCHHHHH
Confidence            999999 9999999844     3568999999 89988                  899999999999999999999999


Q ss_pred             HHHHcCCCCCCCcC
Q 041785          166 ILTREDPDYPYSAN  179 (181)
Q Consensus       166 ~Ll~~g~~~~~~~~  179 (181)
                      +|.+...+.+.+++
T Consensus       172 ~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          172 MMEDYIKKYNLKEN  185 (186)
T ss_dssp             HHHHHHHHHTCCC-
T ss_pred             HHHHHHHHHhcccC
Confidence            99987766666554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=1.6e-25  Score=171.29  Aligned_cols=153  Identities=18%  Similarity=0.204  Sum_probs=125.4

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..|+.+++++|++.    +.+++.++..|.||
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~   83 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTP   83 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCCCCCCCCH
Confidence            345789999999999999999999999998888889999999999  999999999999997    88999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------H------HHhhcccCCCchHHHHHHHcCCHHHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------R------QMIRMVNNEKNTALHEAVSHGNVEVVK  165 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------~------~~~~~~~~~g~t~l~~A~~~~~~~~~~  165 (181)
                      ||+|+..|+.+++++|++.|+++...+..+.......         .      ...+..+..|.||||+|+..|+.++++
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  163 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE  163 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999988765555544443322         1      123455678889999999999999999


Q ss_pred             HHHHcCCCCCCCcC
Q 041785          166 ILTREDPDYPYSAN  179 (181)
Q Consensus       166 ~Ll~~g~~~~~~~~  179 (181)
                      +|+++|++++..+.
T Consensus       164 ~Ll~~g~~~~~~~~  177 (437)
T 1n11_A          164 LLLERDAHPNAAGK  177 (437)
T ss_dssp             HHHHTTCCTTCCCS
T ss_pred             HHHhCCCCCCCCCC
Confidence            99999998877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.7e-26  Score=147.78  Aligned_cols=112  Identities=18%  Similarity=0.153  Sum_probs=104.3

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      ..+.||||.|+..|+.+++++|++.+.+++..+..|.||||+|  +..++.+++++|++.    +++++.+|..|+||||
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA--ADCGQLEILEFLLLK----GADINAPDKHHITPLL   78 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHH--HHTTCHHHHHHHHTT----TCCTTCCCTTSCCHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHH--HHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHH
Confidence            4578999999999999999999999999988899999999999  999999999999986    9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHc
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSH  158 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~  158 (181)
                      +|+..++.+++++|++.|+++                  +.+|..|.||+++|...
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGADK------------------TVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHCCCH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHhCCH
Confidence            999999999999999999988                  88999999999999443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=2.5e-25  Score=153.43  Aligned_cols=132  Identities=19%  Similarity=0.215  Sum_probs=121.1

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhc-ccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVI-ESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      .+.||||.|+..|+.+.++.|+..+. +++..+..|.||||+|  +..++.+++++|++.    +++++.++..|.||||
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~   77 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA--VHNNDIEIAKALIDR----GADINLQNSISDSPYL   77 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHH
Confidence            56799999999999999999999765 7778899999999999  999999999999997    9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhh-hhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCcC
Q 041785          103 LAAKYSHFDIVRVLIERA-QLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRED-PDYPYSAN  179 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~  179 (181)
                      +|+..++.+++++|++.+ .++                  +.++..|.||||+|+..|+.+++++|+++| ++++.++.
T Consensus        78 ~A~~~~~~~~~~~Ll~~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  138 (201)
T 3hra_A           78 YAGAQGRTEILAYMLKHATPDL------------------NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND  138 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCT------------------TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT
T ss_pred             HHHHcCCHHHHHHHHhccCccc------------------ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Confidence            999999999999999654 454                  788999999999999999999999999999 88887764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=4.6e-26  Score=163.16  Aligned_cols=128  Identities=22%  Similarity=0.168  Sum_probs=116.0

Q ss_pred             cCCCHHHHHHH---HcCCcHHHHHHHHHhccc-----------ccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccc
Q 041785           23 SQMDPNLFKAA---ADGSVEPFKDMAREVIES-----------SLTVHTKNTILHINIICQETENASTKFVEEILEICPA   88 (181)
Q Consensus        23 ~~~~t~l~~a~---~~g~~~~~~~ll~~~~~~-----------~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~   88 (181)
                      ..|.||||+|+   ..|+.+++++|++.|.+.           ...+..|.||||+|  +..++.+++++|++.    |+
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga  117 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIA--IERRCKHYVELLVEK----GA  117 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHH--HHTTCHHHHHHHHHT----TC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHH--HHcCCHHHHHHHHhC----CC
Confidence            56999999999   779999999999987542           23455899999999  999999999999997    99


Q ss_pred             cccccc--------------cCCCcHHHHHHHcCCHHHHHHHHH---hhhhccCCCCCCcchHHHHHHHhhcccCCCchH
Q 041785           89 LLLQVN--------------AKGDTPLHLAAKYSHFDIVRVLIE---RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA  151 (181)
Q Consensus        89 ~~~~~~--------------~~g~t~L~~a~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  151 (181)
                      +++.++              ..|.||||+|+..|+.+++++|++   .|+++                  +.+|..|+||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~------------------~~~d~~g~Tp  179 (260)
T 3jxi_A          118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL------------------RRQDSRGNTV  179 (260)
T ss_dssp             CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT------------------TCCCTTSCCH
T ss_pred             CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC------------------cccCCCCCcH
Confidence            999988              589999999999999999999999   88887                  8999999999


Q ss_pred             HHHHHHcCC---------HHHHHHHHHcCCCC
Q 041785          152 LHEAVSHGN---------VEVVKILTREDPDY  174 (181)
Q Consensus       152 l~~A~~~~~---------~~~~~~Ll~~g~~~  174 (181)
                      ||+|+..++         .+++++|+++|+++
T Consensus       180 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          180 LHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            999999887         79999999999988

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=1.1e-25  Score=162.29  Aligned_cols=131  Identities=18%  Similarity=0.180  Sum_probs=118.7

Q ss_pred             cccCCCHHHHHHHHc---CCcHHHHHHHHHhccc-------c----cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhc
Q 041785           21 KQSQMDPNLFKAAAD---GSVEPFKDMAREVIES-------S----LTVHTKNTILHINIICQETENASTKFVEEILEIC   86 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~-------~----~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~   86 (181)
                      ....|.||||+|+..   |+.+++++|++.|++.       +    ..+..|.||||+|  +..++.+++++|++.    
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A--~~~g~~~~v~~Ll~~----  123 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA--IERRNMTLVTLLVEN----  123 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHH--HHTTCHHHHHHHHHT----
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHH--HHcCCHHHHHHHHHC----
Confidence            356799999999987   9999999999988652       2    1456899999999  999999999999997    


Q ss_pred             ccccccccc--------------CCCcHHHHHHHcCCHHHHHHHHH---hhhhccCCCCCCcchHHHHHHHhhcccCCCc
Q 041785           87 PALLLQVNA--------------KGDTPLHLAAKYSHFDIVRVLIE---RAQLAQHGDEEPESGIEAFRQMIRMVNNEKN  149 (181)
Q Consensus        87 ~~~~~~~~~--------------~g~t~L~~a~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  149 (181)
                      +++++.++.              .|.||||+|+..|+.+++++|++   .|+++                  +.+|..|+
T Consensus       124 ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~------------------~~~d~~g~  185 (273)
T 2pnn_A          124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI------------------SARDSVGN  185 (273)
T ss_dssp             TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT------------------TCCCTTSC
T ss_pred             CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc------------------eeeCCCCC
Confidence            899999886              79999999999999999999999   88887                  89999999


Q ss_pred             hHHHHHHHcCC---------HHHHHHHHHcCCCCC
Q 041785          150 TALHEAVSHGN---------VEVVKILTREDPDYP  175 (181)
Q Consensus       150 t~l~~A~~~~~---------~~~~~~Ll~~g~~~~  175 (181)
                      ||||+|+..|+         .+++++|+++|++++
T Consensus       186 tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             CHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence            99999999988         799999999999886

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=6.3e-26  Score=163.63  Aligned_cols=135  Identities=20%  Similarity=0.235  Sum_probs=104.5

Q ss_pred             cccCCCHHHHHHHHcCCcH-HHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           21 KQSQMDPNLFKAAADGSVE-PFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~-~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      ....+.|||+.|+..+... +++.|++.|++++.++..|.||||+|  +..|+.+++++|+..    +++++.++..|.|
T Consensus        48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A--~~~g~~~~v~~Ll~~----~a~~~~~~~~g~t  121 (269)
T 4b93_B           48 ADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVA--ALHGRADLIPLLLKH----GANAGARNADQAV  121 (269)
T ss_dssp             ---------------------------CCCCTTCCCTTSCCHHHHH--HHTTCTTHHHHHHHT----TCCTTCCCTTCCC
T ss_pred             cCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCcHHHHHHHHhc----CCCcCccCCCCCC
Confidence            3456789999999888764 78899999999999999999999999  999999999999987    8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |+|+|+..++.+++++|++.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       122 ~l~~a~~~~~~~~~~~Ll~~g~~~------------------n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~  183 (269)
T 4b93_B          122 PLHLACQQGHFQVVKCLLDSNAKP------------------NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNN  183 (269)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS------------------CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT
T ss_pred             ccccccccChHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc
Confidence            999999999999999999999988                  88999999999999999999999999999999988765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.93  E-value=4.1e-25  Score=163.80  Aligned_cols=132  Identities=21%  Similarity=0.214  Sum_probs=107.7

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhh----hhHHHHHHHHHhhccccccccccC
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINIICQETE----NASTKFVEEILEICPALLLQVNAK   96 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~   96 (181)
                      ...|.||||+|+..|+.+++++|+++ |++++.++..|.+++|.+  +..+.    ..++++|++.    |++++.++..
T Consensus       165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~--~~~~~~~~~~~i~~lLl~~----gad~n~~d~~  238 (337)
T 4g8k_A          165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA--LLSSDDSDVEAITHLLLDH----GADVNVRGER  238 (337)
T ss_dssp             TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH--HHHSCTTTHHHHHHHHHHT----TCCTTCCCGG
T ss_pred             cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHH--HHHcCcccHHHHHHHHHHC----CCCCCCcCCC
Confidence            45688999999999999999999974 888888899999999887  54333    2455666664    8999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHh-hhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 041785           97 GDTPLHLAAKYSHFDIVRVLIER-AQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP  175 (181)
Q Consensus        97 g~t~L~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  175 (181)
                      |+||||+|+..++.++++.|++. +.++                  +.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       239 g~t~L~~a~~~~~~~~v~~Ll~~~~~~v------------------n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          239 GKTPLILAVEKKHLGLVQRLLEQEHIEI------------------NDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHTSTTCCT------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             CCCHHHHHHHhhhhHHHHHHHHhcCCcc------------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999999998875 5565                  7778888888888888888888888888888876


Q ss_pred             CC
Q 041785          176 YS  177 (181)
Q Consensus       176 ~~  177 (181)
                      .+
T Consensus       301 ~~  302 (337)
T 4g8k_A          301 CG  302 (337)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=9.1e-25  Score=157.64  Aligned_cols=152  Identities=13%  Similarity=0.072  Sum_probs=121.6

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+..|+.+++++|++.|++++..+..|.||||+|  +..++.+++++|++.    +.+++.++..|.|||
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L  109 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA--AIAGSVKLLKLFLSK----GADVNECDFYGFTAF  109 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCBCTTCCBHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCcccCCHH
Confidence            45688999999999999999999999999988899999999999  999999999999997    899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCC----------CCCcchHHHH----------------HHHhhcccCCCchHHHHH
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGD----------EEPESGIEAF----------------RQMIRMVNNEKNTALHEA  155 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~----------~~~~~~~~~~----------------~~~~~~~~~~g~t~l~~A  155 (181)
                      |+|+..++.+++++|++.|+++....          ..+.......                +..++.++..|+||||+|
T Consensus       110 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  189 (285)
T 1wdy_A          110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA  189 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            99999999999999999998774432          1122221111                123345566777777777


Q ss_pred             HHcCC----HHHHHHHHHcCCCCCCCcC
Q 041785          156 VSHGN----VEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       156 ~~~~~----~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +..++    .+++++|+++|++++.++.
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~  217 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGADVNVRGE  217 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCCSSCCCT
T ss_pred             HHccccchHHHHHHHHHHcCCCCCCcCC
Confidence            77777    7777777777777766543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=153.34  Aligned_cols=152  Identities=21%  Similarity=0.171  Sum_probs=127.3

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhccccc-ccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSL-TVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~-~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ...|.||||+|+..|+.+++++|++.+.+... .+..|.||||+|  +..++.+++++|++.    +.+++.++..|.||
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~  112 (240)
T 3eu9_A           39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA--TRQGHLSMVVQLMKY----GADPSLIDGEGCSC  112 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCH
Confidence            45688999999999999999999999888763 445599999999  999999999999986    89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH----------------HHHhhcccC-CCchHHHHHHHcCCHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF----------------RQMIRMVNN-EKNTALHEAVSHGNVEV  163 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~g~t~l~~A~~~~~~~~  163 (181)
                      ||+|+..++.+++++|++.|.++...+..+.......                +.+++..+. .|.||||+|+..|+.++
T Consensus       113 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  192 (240)
T 3eu9_A          113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV  192 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHH
Confidence            9999999999999999999988765555444433222                133455665 89999999999999999


Q ss_pred             HHHHHHcCCCCCCCcC
Q 041785          164 VKILTREDPDYPYSAN  179 (181)
Q Consensus       164 ~~~Ll~~g~~~~~~~~  179 (181)
                      +++|+++|++++..+.
T Consensus       193 v~~Ll~~g~~~~~~~~  208 (240)
T 3eu9_A          193 ISLLLEAGANVDAQNI  208 (240)
T ss_dssp             HHHHHHHTCCTTCBCT
T ss_pred             HHHHHHcCCCCCCcCC
Confidence            9999999999987754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=2.5e-25  Score=151.80  Aligned_cols=124  Identities=20%  Similarity=0.213  Sum_probs=109.0

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccc-cCCCcH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVN-AKGDTP  100 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~  100 (181)
                      ...|.||||.|+..|+.++++.|++ +.+++..+..|.||||+|  +..++.+++++|++.    +++++.++ ..|+||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A--~~~~~~~~v~~Ll~~----ga~~~~~~~~~g~tp  113 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFV--AGLGSDKCVRLLAEA----GADLDHRDMRGGLTA  113 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCSSSSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCcCCCCCCCCH
Confidence            3467899999999999999999999 988888999999999999  999999999999997    99999988 899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHc----------------CCHHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSH----------------GNVEVV  164 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~----------------~~~~~~  164 (181)
                      ||+|+..++.+++++|++.|+++                  +.+|..|+||||+|+..                |..+++
T Consensus       114 L~~A~~~~~~~~v~~Ll~~ga~~------------------~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~  175 (183)
T 3deo_A          114 LHMAAGYVRPEVVEALVELGADI------------------EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI  175 (183)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCT------------------TCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHcCCCC------------------cCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHH
Confidence            99999999999999999999988                  66677777777766654                556777


Q ss_pred             HHHHHc
Q 041785          165 KILTRE  170 (181)
Q Consensus       165 ~~Ll~~  170 (181)
                      ++|.++
T Consensus       176 ~~L~~~  181 (183)
T 3deo_A          176 NVLEGQ  181 (183)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            777643

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.92  E-value=1.4e-24  Score=157.23  Aligned_cols=125  Identities=16%  Similarity=0.161  Sum_probs=116.6

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHhcccc------cccCCCCchhHHHHhhhh---hhhhHHHHHHHHHhhccccccccccC
Q 041785           26 DPNLFKAAADGSVEPFKDMAREVIESS------LTVHTKNTILHINIICQE---TENASTKFVEEILEICPALLLQVNAK   96 (181)
Q Consensus        26 ~t~l~~a~~~g~~~~~~~ll~~~~~~~------~~~~~g~t~Lh~a~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~   96 (181)
                      .++|+.|+..|+.+.++.++..|.+.+      ..+..|.||||+|  +..   ++.+++++|++.    |++++.+|..
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A--~~~~~~~~~~~v~~Ll~~----ga~in~~d~~  204 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA--VRSVDRTSLHIVDFLVQN----SGNLDKQTGK  204 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHH--HHHCCTTTHHHHHHHHHH----CSCTTCCCTT
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHH--HHhcccchHHHHHHHHHC----CCCccccCCC
Confidence            368999999999999999999988754      3478899999999  888   899999999998    9999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785           97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus        97 g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                      |+||||+|+..|+.+++++|++.|+++                  +.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       205 g~TpLh~A~~~g~~~~v~~Ll~~gad~------------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          205 GSTALHYCCLTDNAECLKLLLRGKASI------------------EIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC------------------CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999998                  899999999999999999999999999999874

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.92  E-value=8.7e-25  Score=164.39  Aligned_cols=156  Identities=11%  Similarity=0.134  Sum_probs=128.3

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.|++++.++..|.||||+|  +..++.+++++|++... .+.+++..+..|.||
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~~~-~~~~~~~~d~~g~t~  238 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA--AANRDFGMMVYMLNSTK-LKGDIEELDRNGMTA  238 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH--HHTTCHHHHHHHTTSHH-HHHTTSCCCTTSCCH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHH--HHCCCHHHHHHHHhcCc-cccChhhcCCCCCCH
Confidence            355789999999999999999999999999988899999999999  99999999999988511 026888899999999


Q ss_pred             HHHHHHcC---CHHHHHHHHHhhhhccCC--------CCCCcchHHHH----------------HHHhhcccCCCchHHH
Q 041785          101 LHLAAKYS---HFDIVRVLIERAQLAQHG--------DEEPESGIEAF----------------RQMIRMVNNEKNTALH  153 (181)
Q Consensus       101 L~~a~~~~---~~~~~~~L~~~~~~~~~~--------~~~~~~~~~~~----------------~~~~~~~~~~g~t~l~  153 (181)
                      ||+|+..+   +.+++++|++.|+++...        +..+.......                +.+++.+|..|+||||
T Consensus       239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~  318 (373)
T 2fo1_E          239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  318 (373)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHH
Confidence            99999888   788999999998877431        11222222211                1456678899999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          154 EAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       154 ~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +|+..|+.+++++|+++|++++..+.
T Consensus       319 ~A~~~g~~~iv~~Ll~~gad~~~~d~  344 (373)
T 2fo1_E          319 LAAQEGRIEVVMYLIQQGASVEAVDA  344 (373)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             HHHHcCCHHHHHHHHHcCCCccCCCC
Confidence            99999999999999999999988765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.92  E-value=3.8e-25  Score=160.07  Aligned_cols=128  Identities=16%  Similarity=0.144  Sum_probs=119.0

Q ss_pred             hcccCCCHHHHHHH-----HcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccc
Q 041785           20 IKQSQMDPNLFKAA-----ADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVN   94 (181)
Q Consensus        20 ~~~~~~~t~l~~a~-----~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   94 (181)
                      .....|.||||+|+     ..++.++++.|++.|......+..|.||||+|  +..++.+++++|++.    |++++.+|
T Consensus       140 ~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~----gad~n~~d  213 (276)
T 4hbd_A          140 KQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLA--VSHGRVDVVKALLAC----EADVNVQD  213 (276)
T ss_dssp             CCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCC
T ss_pred             CCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCCC
Confidence            34567899999999     66899999999999988777888999999999  999999999999997    99999999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHH-hhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcC
Q 041785           95 AKGDTPLHLAAKYSHFDIVRVLIE-RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRED  171 (181)
Q Consensus        95 ~~g~t~L~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  171 (181)
                      ..|+||||+|+..|+.+++++|++ .|+++                  +.+|..|+||||+|+..|+.+++++|++++
T Consensus       214 ~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~------------------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          214 DDGSTALMCACEHGHKEIAGLLLAVPSCDI------------------SLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHTSTTCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCCCCC------------------cCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999999999 78887                  889999999999999999999999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=1.6e-25  Score=159.37  Aligned_cols=142  Identities=18%  Similarity=0.203  Sum_probs=115.7

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccc-cCCCcHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVN-AKGDTPL  101 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L  101 (181)
                      ..|.||||.|+..|+.++++.|++ +.+++.++..|.||||+|  +..++.+++++|++.    +++++.++ ..|+|||
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~~g~t~L  115 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFV--AGLGSDKCVRLLAEA----GADLDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCSSSCCCHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHH--HHCCCHHHHHHHHHc----CCCCCcCCCCCCCCHH
Confidence            467899999999999999999999 988888999999999999  999999999999997    99999998 8899999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      |+|+..|+.+++++|++.|+++...+..+.........  ......+.|||++|+..|+.+++++|++++.+
T Consensus       116 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~--~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE--ILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH--HHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH--HHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            99999999999999999999984444433333332222  11223455555555678899999999986443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.92  E-value=1.7e-24  Score=162.84  Aligned_cols=130  Identities=20%  Similarity=0.214  Sum_probs=111.3

Q ss_pred             ccCCCHHHHHHHHcC---CcHHHHHHHHHhccccc--------ccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccc
Q 041785           22 QSQMDPNLFKAAADG---SVEPFKDMAREVIESSL--------TVHTKNTILHINIICQETENASTKFVEEILEICPALL   90 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g---~~~~~~~ll~~~~~~~~--------~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~   90 (181)
                      ...|.||||+|+..+   +.++++.|++.|++++.        .+..|.||||+|  +..++.+++++|++.   .+.++
T Consensus       232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~~v~~Ll~~---~~~~~  306 (373)
T 2fo1_E          232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA--AQVSNMPIVKYLVGE---KGSNK  306 (373)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH--HSSCCHHHHHHHHHH---SCCCT
T ss_pred             CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHH--HHhCCHHHHHHHHHh---cCCCc
Confidence            456788899988887   78888888888877654        456789999999  888899999988876   34888


Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHc
Q 041785           91 LQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE  170 (181)
Q Consensus        91 ~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  170 (181)
                      +.+|..|.||||+|+..|+.+++++|++.|+++                  +.+|..|.|||++|+..|+.+++++|+++
T Consensus       307 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~------------------~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          307 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV------------------EAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------------------SCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------------cCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            888999999999999999999999999998887                  88999999999999999999999999999


Q ss_pred             CCCC
Q 041785          171 DPDY  174 (181)
Q Consensus       171 g~~~  174 (181)
                      |++-
T Consensus       369 ~a~~  372 (373)
T 2fo1_E          369 RPER  372 (373)
T ss_dssp             C---
T ss_pred             Cccc
Confidence            9863

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.92  E-value=2.8e-24  Score=151.59  Aligned_cols=133  Identities=19%  Similarity=0.249  Sum_probs=116.9

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccc-cCCCcHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVN-AKGDTPL  101 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L  101 (181)
                      ..+.++|+.|+..|+.+++++|++.|.+++..+..|.||||+|  +..++.+++++|++.    +.+++... ..|.|||
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWA--AINNRIDLVKYYISK----GAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCBTTTTBCHH
T ss_pred             cccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHH--HHhCCHHHHHHHHHc----CCcchhhcCCcCCChh
Confidence            3567899999999999999999999999888899999999999  999999999999997    76666544 4599999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      |+|+..++.+++++|++.|+++                  +.++..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  140 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADP------------------SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ  140 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCC
Confidence            9999999999999999999887                  67778888888888888888888888888888776543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.2e-24  Score=131.42  Aligned_cols=93  Identities=30%  Similarity=0.430  Sum_probs=82.2

Q ss_pred             CCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHH
Q 041785           57 TKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA  136 (181)
Q Consensus        57 ~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  136 (181)
                      +|.||||+|  +..++.+++++|++.    +.+++.++..|+||||+|+..++.+++++|++.|+++             
T Consensus         1 ~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------   61 (93)
T 1n0q_A            1 NGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-------------   61 (93)
T ss_dssp             --CCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------
T ss_pred             CCCcHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------
Confidence            478999999  889999999998886    8888999999999999999999999999999998887             


Q ss_pred             HHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785          137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus       137 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                           +.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        62 -----~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           62 -----NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             -----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -----CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                 78888999999999999999999999999875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.4e-24  Score=158.92  Aligned_cols=126  Identities=20%  Similarity=0.234  Sum_probs=117.6

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhccccc------ccCCCCchhHHHHhhhh---hhhhHHHHHHHHHhhcccccccccc
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESSL------TVHTKNTILHINIICQE---TENASTKFVEEILEICPALLLQVNA   95 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~------~~~~g~t~Lh~a~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~   95 (181)
                      ..++|+.|+..|+.+.++.|+..|.+++.      .+..|.||||+|  +..   ++.+++++|++.    +++++.+|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~iv~~Ll~~----gadvn~~d~  224 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLA--VKVANQASLPLVDFIIQN----GGHLDAKAA  224 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHH--HHTCCTTTHHHHHHHHHH----SSCTTCCCT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHH--HHhcccCcHHHHHHHHhc----CCCCCCCCC
Confidence            34679999999999999999999988875      588999999999  876   889999999998    999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785           96 KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus        96 ~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                      .|+||||+|+..|+.+++++|++.|+++                  +.+|..|.|||++|+..++.+++++|+++|++.
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~------------------~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALV------------------GTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCC------------------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            9999999999999999999999999998                  899999999999999999999999999988764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=4.3e-25  Score=151.05  Aligned_cols=129  Identities=12%  Similarity=0.082  Sum_probs=113.5

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhccccccc-CCCCchhHHHHhhhhhhh----hHHHHHHHHHhhccccccccccCCCc
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESSLTV-HTKNTILHINIICQETEN----ASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~Lh~a~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      +.++|+.|++.|+.+.++.++..+.+.  .+ ..|.||||+|  +..++.    +++++|++.    |++++.++..|+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~T   77 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDV--LRNNNDEARYKISMFLINK----GADIKSRTKEGTT   77 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHHT----TCCSSCCCTTCCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHH--HHcCCcchHHHHHHHHHHC----CCCCCCCCCCCCc
Confidence            457899999999999999999877654  44 7799999999  887764    588888886    9999999999999


Q ss_pred             HHHHHHHcCC------HHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCc-hHHHHHHHcC-----CHHHHHHH
Q 041785          100 PLHLAAKYSH------FDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN-TALHEAVSHG-----NVEVVKIL  167 (181)
Q Consensus       100 ~L~~a~~~~~------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~L  167 (181)
                      |||+|+..++      .+++++|++.|+++                  +.+|..|+ ||||+|+..+     ..+++++|
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi------------------n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~L  139 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGADI------------------TALYKPYKIVVFKNIFNYFVDENEMIPLYKLI  139 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCCS------------------SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCCC------------------CccCCCcCchHHHHHHHcCCChhhHHHHHHHH
Confidence            9999999987      57899999999998                  99999999 9999999954     35699999


Q ss_pred             HH-cCCCCCCCcC
Q 041785          168 TR-EDPDYPYSAN  179 (181)
Q Consensus       168 l~-~g~~~~~~~~  179 (181)
                      ++ +|++++.+++
T Consensus       140 l~~~gad~~~~d~  152 (186)
T 3t8k_A          140 FSQSGLQLLIKDK  152 (186)
T ss_dssp             HTSTTCCTTCCCT
T ss_pred             HHhcCCCCcccCC
Confidence            99 9999998875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=5.2e-24  Score=159.50  Aligned_cols=125  Identities=18%  Similarity=0.210  Sum_probs=117.3

Q ss_pred             CCHHHHHHHHc-CCcHHHHHHHHHhccccccc--CCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           25 MDPNLFKAAAD-GSVEPFKDMAREVIESSLTV--HTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        25 ~~t~l~~a~~~-g~~~~~~~ll~~~~~~~~~~--~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      +.++||.|+.. |+.++++.|++.|++++..+  ..|.||||+|  +..++.+++++|++.    +++++.+|..|+|||
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~A--a~~g~~~iv~~LL~~----Gadvn~~d~~G~TpL  272 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQA--TAANSLLACEFLLQN----GANVNQADSAGRGPL  272 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHH--HHCCCHHHHHHHHHc----CCCCCCCCCCCCCHH
Confidence            45799999999 99999999999999998777  8899999999  999999999999997    999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      |+|+..++.+++++|++.|+++                  +.+|..|.||||+|+..++.+++++|+..+..
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~------------------~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADL------------------GARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHcCcHHHHHHHHHCcCCC------------------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999998                  89999999999999999999999999987643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=8.9e-24  Score=156.63  Aligned_cols=133  Identities=17%  Similarity=0.168  Sum_probs=123.8

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccC-CCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVH-TKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ..++.|+||.|++.|++++|+.|++.|++++.++. .|.||||+|  +..|+.+++++|++.    |++++.++..+.++
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~~----ga~~~~~~~~~~~~   95 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRH----GADPVLRKKNGATP   95 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHHc----CCchhhhccCCCch
Confidence            34578999999999999999999999999987654 599999999  999999999999997    99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      ++.++..+...++..++..+.++                  +.+|..|.||+|+|+..|+.+++++|+++|++++...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~  155 (337)
T 4g8k_A           96 FILAAIAGSVKLLKLFLSKGADV------------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR  155 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             hHHHHhcccchhhHHhhhccchh------------------hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh
Confidence            99999999999999999999887                  8899999999999999999999999999999987654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=1.3e-23  Score=136.73  Aligned_cols=107  Identities=24%  Similarity=0.356  Sum_probs=98.2

Q ss_pred             hcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCC
Q 041785           48 VIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGD  127 (181)
Q Consensus        48 ~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~  127 (181)
                      |+++ .++..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.|+++    
T Consensus         1 G~d~-~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----   69 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIA--SIKGDIPSVEYLLQN----GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV----   69 (137)
T ss_dssp             ---C-CCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----
T ss_pred             CCCC-CcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc----
Confidence            3455 5789999999999  999999999999986    8999999999999999999999999999999999887    


Q ss_pred             CCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          128 EEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                                    +.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        70 --------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  107 (137)
T 3c5r_A           70 --------------NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI  107 (137)
T ss_dssp             --------------TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             --------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence                          88999999999999999999999999999999988764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=5.3e-23  Score=125.20  Aligned_cols=92  Identities=26%  Similarity=0.338  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (181)
                      .|.||||+|+..|+.+++++|++.|++++.++..|.||||+|  +..++.+++++|++.    +++++.+|..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A--~~~~~~~~v~~Ll~~----ga~~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHH
Confidence            378999999999999999999999999999999999999999  999999999999997    99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhh
Q 041785          104 AAKYSHFDIVRVLIERAQ  121 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~  121 (181)
                      |+..++.+++++|++.|+
T Consensus        75 A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCC
Confidence            999999999999999885

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=2.7e-23  Score=135.13  Aligned_cols=106  Identities=11%  Similarity=0.135  Sum_probs=99.2

Q ss_pred             cccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCC
Q 041785           49 IESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDE  128 (181)
Q Consensus        49 ~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~  128 (181)
                      ++.+..+..|.||||+|  +..++.+++++|++.    +.+++.++..|+||||+|+. ++.+++++|++.|+++     
T Consensus         3 ~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-----   70 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATA--AARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-----   70 (136)
T ss_dssp             CCCSCCCCCCSCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-----
T ss_pred             CCccCCCCCCccHHHHH--HHcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-----
Confidence            45567889999999999  999999999999997    89999999999999999999 9999999999999988     


Q ss_pred             CCcchHHHHHHHhhcccCC-CchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          129 EPESGIEAFRQMIRMVNNE-KNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                                   +.+|.. |+||||+|+..|+.+++++|+++|++++..+.
T Consensus        71 -------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~  109 (136)
T 1d9s_A           71 -------------NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA  109 (136)
T ss_dssp             -------------SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSS
T ss_pred             -------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence                         888999 99999999999999999999999999988764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=1.1e-22  Score=129.91  Aligned_cols=101  Identities=19%  Similarity=0.177  Sum_probs=93.5

Q ss_pred             cCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchH
Q 041785           55 VHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGI  134 (181)
Q Consensus        55 ~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  134 (181)
                      +..|.+|||+|  +..++.++++.|++.    +.+++.++..|+||||+|+..++.+++++|++.|+++           
T Consensus         4 ~~~~~~~l~~A--~~~~~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------   66 (123)
T 3aaa_C            4 GSMCDKEFMWA--LKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-----------   66 (123)
T ss_dssp             ---CHHHHHHH--HHTTCHHHHHHHHHT----TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-----------
T ss_pred             ccccchHHHHH--HHcCCHHHHHHHHHc----CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----------
Confidence            56789999999  999999999999986    8899999999999999999999999999999999888           


Q ss_pred             HHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          135 EAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       135 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                             +.+|..|+||||+|+..++.+++++|+++|++++..+.
T Consensus        67 -------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  104 (123)
T 3aaa_C           67 -------NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP  104 (123)
T ss_dssp             -------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence                   88999999999999999999999999999999988765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.88  E-value=1.3e-22  Score=142.97  Aligned_cols=115  Identities=17%  Similarity=0.070  Sum_probs=97.8

Q ss_pred             HHHHHHHhcccc---cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 041785           41 FKDMAREVIESS---LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLI  117 (181)
Q Consensus        41 ~~~ll~~~~~~~---~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~  117 (181)
                      ++.|++.+.+++   ..+..|.||||+|  +..|+.++++.|++.    +.+++.++..|+||||+|+..|+.+++++|+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll   74 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDA--ALTGELEVVQQAVKE----MNDPSQPNEEGITALHNAICGANYSIVDFLI   74 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHH--HHHTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHH--HHcCCHHHHHHHHhc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            456788787765   3455677889999  999999999999997    8999999999999999999999999999999


Q ss_pred             HhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          118 ERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +.|+++                  +.+|..|+||||+|+..|+.+++++|+++|++++..++
T Consensus        75 ~~ga~~------------------n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~  118 (229)
T 2vge_A           75 TAGANV------------------NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL  118 (229)
T ss_dssp             HTTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCS
T ss_pred             HCCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccC
Confidence            999988                  88999999999999999999999999999999988754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=2.8e-23  Score=131.21  Aligned_cols=100  Identities=29%  Similarity=0.344  Sum_probs=55.7

Q ss_pred             ccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcch
Q 041785           54 TVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESG  133 (181)
Q Consensus        54 ~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  133 (181)
                      +|..|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.|+++          
T Consensus         5 ~d~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------   68 (115)
T 2l6b_A            5 GSKDGNTPLHNA--AKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV----------   68 (115)
T ss_dssp             CSCSSCCHHHHH--HHHTCHHHHHHHTTT----TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT----------
T ss_pred             cCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC----------
Confidence            345555555555  555555555555554    5555555555555555555555555555555555554          


Q ss_pred             HHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785          134 IEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus       134 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                              +.+|..|+||||+|+..++.+++++|+++|++++..
T Consensus        69 --------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~  104 (115)
T 2l6b_A           69 --------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR  104 (115)
T ss_dssp             --------TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHH
T ss_pred             --------cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcC
Confidence                    455555555555555555555555555555555443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=1.4e-22  Score=127.94  Aligned_cols=108  Identities=21%  Similarity=0.236  Sum_probs=99.0

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.++++.|++.|++++..+..|.||||+|  +..++.+++++|++.    +++++.++..|.||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~d~~g~tp   78 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA--AKNGHAEIVKLLLAK----GADVNARSKDGNTP   78 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHH--HTTTCHHHHHHHTTT----TCCTTCCCTTCCCT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCcccCCCCCCH
Confidence            345789999999999999999999999999988899999999999  999999999999986    99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL  152 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l  152 (181)
                      ||+|+..++.+++++|++.|+++                  +.++..|.+|-
T Consensus        79 l~~A~~~~~~~~~~~Ll~~ga~~------------------n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKGADV------------------NARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTSSSH------------------HHHSCCCC---
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCC------------------CcCCccccccc
Confidence            99999999999999999999998                  88888888874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=7.4e-22  Score=128.27  Aligned_cols=102  Identities=22%  Similarity=0.232  Sum_probs=94.7

Q ss_pred             ccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcch
Q 041785           54 TVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESG  133 (181)
Q Consensus        54 ~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  133 (181)
                      ....+.||||+|  +..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.|+++          
T Consensus        10 ~~~~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------   73 (136)
T 2jab_A           10 HGSDLGKKLLEA--ARAGQDDEVRILMAN----GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV----------   73 (136)
T ss_dssp             --CHHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------
T ss_pred             ccccccHHHHHH--HHhCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence            356789999999  999999999999997    8999999999999999999999999999999999887          


Q ss_pred             HHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          134 IEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       134 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                              +.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        74 --------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  111 (136)
T 2jab_A           74 --------NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK  111 (136)
T ss_dssp             --------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             --------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCC
Confidence                    88999999999999999999999999999999987764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=5e-21  Score=122.17  Aligned_cols=99  Identities=29%  Similarity=0.417  Sum_probs=93.5

Q ss_pred             CCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHH
Q 041785           57 TKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA  136 (181)
Q Consensus        57 ~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  136 (181)
                      +|.||||+|  +..++.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.|.++             
T Consensus         1 ~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------------   61 (126)
T 1n0r_A            1 NGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-------------   61 (126)
T ss_dssp             CCCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------------
T ss_pred             CCccHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-------------
Confidence            589999999  999999999999997    8899999999999999999999999999999999887             


Q ss_pred             HHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       137 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                           +.++..|.||||+|+..++.+++++|+++|++++..+.
T Consensus        62 -----~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~   99 (126)
T 1n0r_A           62 -----NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK   99 (126)
T ss_dssp             -----TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -----cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCC
Confidence                 88899999999999999999999999999999987754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=8.4e-22  Score=144.17  Aligned_cols=111  Identities=21%  Similarity=0.098  Sum_probs=96.2

Q ss_pred             cccCCCHHHHHHHHc---CCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCC
Q 041785           21 KQSQMDPNLFKAAAD---GSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKG   97 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   97 (181)
                      ....|.||||+|+..   |+.+++++|++.|++++.+|..|.||||+|  +..++.+++++|++.    |++++.+|..|
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A--~~~g~~~~v~~Ll~~----gad~~~~d~~G  259 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYA--ALYNQPDCLKLLLKG----RALVGTVNEAG  259 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCCSCCCTTS
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCC
Confidence            355788999999997   899999999999999998999999999999  999999999999997    99999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCH
Q 041785           98 DTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNV  161 (181)
Q Consensus        98 ~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~  161 (181)
                      .||||+|+..++.+++++|++.|++.                        |.||||+|+..|+.
T Consensus       260 ~TpL~~A~~~~~~~iv~~Ll~~ga~~------------------------g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          260 ETALDIARKKHHKECEELLEQAQAGT------------------------FAFPLHVDYSWVIS  299 (301)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHHHHT------------------------TSSCCC--------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCCC------------------------CCChhHHHHhcCCc
Confidence            99999999999999999999988653                        79999999998763

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=9.5e-23  Score=153.14  Aligned_cols=124  Identities=15%  Similarity=0.163  Sum_probs=102.1

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccc---cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhcccc---ccccccCC
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESS---LTVHTKNTILHINIICQETENASTKFVEEILEICPAL---LLQVNAKG   97 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~---~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~g   97 (181)
                      .+.||||+|+..|+.+++++|++.|....   ..+..|.||||+|  +..|+.+++++|++.    +++   .+..+.. 
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A--a~~G~~eiv~~Ll~~----gad~~~~~i~~~~-  163 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCEL----APTEIMAMIQAEN-  163 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHHS----CTTTHHHHHSHHH-
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH--HHcCCHHHHHHHHhC----CCCccccccCCCC-
Confidence            45699999999999999999999876221   2355688999999  999999999999986    643   2333333 


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhc--ccCCCchHHHHHH-HcCCHHHHHHHHHcCC
Q 041785           98 DTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRM--VNNEKNTALHEAV-SHGNVEVVKILTREDP  172 (181)
Q Consensus        98 ~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~t~l~~A~-~~~~~~~~~~Ll~~g~  172 (181)
                      .||||+|+..|+.+++++|++.|+++                  +.  +|..|+||||+|+ ..|+.+++++|++.|+
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~------------------~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTE------------------ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGG------------------HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCcc------------------chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence            89999999999999999999999886                  55  7788999999999 9999999999998764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=2.9e-21  Score=135.25  Aligned_cols=103  Identities=19%  Similarity=0.180  Sum_probs=96.2

Q ss_pred             ccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHh-hhhccCCCCCCcc
Q 041785           54 TVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER-AQLAQHGDEEPES  132 (181)
Q Consensus        54 ~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~  132 (181)
                      .+..|.||||+|  +..|+.++++.|++.    +.+++.++..|+||||+|+..|+.+++++|++. |+++         
T Consensus        69 ~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~---------  133 (222)
T 3ehr_A           69 QAESIDNPLHEA--AKRGNLSWLRECLDN----RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL---------  133 (222)
T ss_dssp             HEEEESCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC---------
T ss_pred             cccccccccccc--cccCcHHHHHHHHhC----CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc---------
Confidence            456789999999  999999999999986    899999999999999999999999999999998 8887         


Q ss_pred             hHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          133 GIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       133 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                               +.+|..|+||||+|+..|+.+++++|+++|++++..+..
T Consensus       134 ---------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  172 (222)
T 3ehr_A          134 ---------NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE  172 (222)
T ss_dssp             ---------CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT
T ss_pred             ---------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence                     889999999999999999999999999999999887653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.84  E-value=9.4e-22  Score=145.45  Aligned_cols=119  Identities=14%  Similarity=0.044  Sum_probs=104.7

Q ss_pred             HHHHHHHcCCcHHHHHHHHHhccccc-ccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHH
Q 041785           28 NLFKAAADGSVEPFKDMAREVIESSL-TVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAK  106 (181)
Q Consensus        28 ~l~~a~~~g~~~~~~~ll~~~~~~~~-~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~  106 (181)
                      .+|.++..+..++++.|++.|++++. ++..|.||||+|  +..|+.+++++|++.    |++++.++..|+||||+|+.
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~A--a~~g~~~~v~~Ll~~----Gad~n~~d~~g~TpLh~A~~  173 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWL--TSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVK  173 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTBCCTTCCCHHHHHHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHH
Confidence            34677777777888888888999988 899999999999  999999999999997    99999999999999999999


Q ss_pred             cCC---HHHHHHHHHhh-hhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHH----cCCHHHHHHHHHc
Q 041785          107 YSH---FDIVRVLIERA-QLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVS----HGNVEVVKILTRE  170 (181)
Q Consensus       107 ~~~---~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~  170 (181)
                      .|+   .++++.|++.+ .++                  +.+|..|+||||+|+.    .|+.+++++|++.
T Consensus       174 ~g~~~~~~~~~~ll~~~~~~~------------------~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          174 SVNNYDSGTFEALLDYLYPCL------------------ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             SSHHHHTTCHHHHHHHHGGGG------------------GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHhhhccc------------------cCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            998   67888888887 445                  8899999999999999    8999999999987

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=3.7e-21  Score=131.00  Aligned_cols=100  Identities=22%  Similarity=0.152  Sum_probs=93.1

Q ss_pred             cCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchH
Q 041785           55 VHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGI  134 (181)
Q Consensus        55 ~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  134 (181)
                      +..|.||||+|  +..++.++++.|++     +.+++.++..|+||||+|+..++.+++++|++.|+++           
T Consensus        41 ~~~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-----------  102 (183)
T 3deo_A           41 VSEYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-----------  102 (183)
T ss_dssp             HHHHHHHHHHH--HHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------
T ss_pred             CCCCCCHHHHH--HHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------
Confidence            45789999999  99999999999987     6789999999999999999999999999999999988           


Q ss_pred             HHHHHHhhccc-CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          135 EAFRQMIRMVN-NEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       135 ~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                             +.++ ..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       103 -------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~  141 (183)
T 3deo_A          103 -------DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE  141 (183)
T ss_dssp             -------TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             -------CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCC
Confidence                   7777 8899999999999999999999999999988765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.84  E-value=1.6e-21  Score=129.59  Aligned_cols=110  Identities=20%  Similarity=0.076  Sum_probs=88.0

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCc-hhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNT-ILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t-~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      ....|.||||+|+ .|+.+++++|++.|++++.++..|.| |||+|  +..++.+++++|++.    +++++.++..|.|
T Consensus        41 ~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A--~~~~~~~~v~~Ll~~----ga~~~~~d~~g~t  113 (156)
T 1bi7_B           41 PNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA--AREGFLDTLVVLHRA----GARLDVRDAWGRL  113 (156)
T ss_dssp             CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTCCC
T ss_pred             CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH--HHCCCHHHHHHHHHc----CCCCcccCCCCCC
Confidence            3457899999985 99999999999999999989999999 99999  999999999999998    9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHH
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA  155 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  155 (181)
                      |||+|+..++.+++++|++.|+++                  +.++..|.||.+-+
T Consensus       114 pl~~A~~~~~~~~v~~Ll~~ga~~------------------~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          114 PVDLAEELGHRDVARYLRAAAGGT------------------RGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHSSCC-----------------------------------
T ss_pred             HHHHHHHhCHHHHHHHHHHcCCCC------------------CccCcCcCcccccC
Confidence            999999999999999999999998                  88888999987743

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=1.9e-20  Score=133.09  Aligned_cols=127  Identities=19%  Similarity=0.117  Sum_probs=105.5

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHH
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLA  104 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a  104 (181)
                      +.++++.++..|+...+..+...+.+   .+..|.||||+|  +..|+.++++.|+.     +.+++.++..|+||||+|
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~~~---~~~~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A   84 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFV   84 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSCHH---HHHHHHHHHHHH--HTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHH
T ss_pred             CccHHHHHHHcCCCcccccccccccc---cccCCCCHHHHH--HHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHH
Confidence            33445555556665554443332222   245789999999  99999999999887     678999999999999999


Q ss_pred             HHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhccc-CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          105 AKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVN-NEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       105 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      +..|+.+++++|++.|+++                  +.++ ..|+||||+|+..|+.+++++|+++|++++..++
T Consensus        85 ~~~g~~~~v~~Ll~~ga~~------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  142 (244)
T 3ui2_A           85 AGLGSDKCVRLLAEAGADL------------------DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE  142 (244)
T ss_dssp             HHHTCHHHHHHHHHTTCCT------------------TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHCCCHHHHHHHHHcCCCC------------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            9999999999999999988                  7777 8899999999999999999999999999988765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=3.6e-20  Score=116.08  Aligned_cols=89  Identities=22%  Similarity=0.339  Sum_probs=51.4

Q ss_pred             cCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchH
Q 041785           55 VHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGI  134 (181)
Q Consensus        55 ~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  134 (181)
                      +..|.|+||+|  +..++.+++++|++.    +++++.++..|.||||+|+..++.+++++|++.|+++           
T Consensus        21 ~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-----------   83 (110)
T 2zgd_A           21 GSDLGKKLLEA--ARAGQDDEVRILMAN----GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-----------   83 (110)
T ss_dssp             -CCHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred             CCccchHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-----------
Confidence            44555566665  555555555555554    5555555555666666666666666666666655554           


Q ss_pred             HHHHHHhhcccCCCchHHHHHHHcCCHHHHHHH
Q 041785          135 EAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL  167 (181)
Q Consensus       135 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  167 (181)
                             +.+|..|+||||+|+..|+.+++++|
T Consensus        84 -------~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           84 -------XAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             -------TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             -------cccccCCCcHHHHHHHcCCHHHHHHh
Confidence                   55555566666666666666655554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=2.2e-22  Score=151.19  Aligned_cols=120  Identities=11%  Similarity=0.111  Sum_probs=104.8

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcc---cccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccc--cccCCC
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIE---SSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQ--VNAKGD   98 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~---~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~g~   98 (181)
                      .+.||||+|+..|+.+++++|++.|++   .+..+.+ .||||+|  +..|+.+++++|++.    +++++.  ++..|.
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A--a~~G~~eiv~~Ll~~----ga~~~~~~~d~~g~  199 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA--AENGHLHVLNRLCEL----APTEATAMIQAENY  199 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH--HHTTCHHHHHHHHHS----CGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH--HHCCCHHHHHHHHHc----CCccchhccCCCCC
Confidence            456899999999999999999999864   2222333 9999999  999999999999997    888777  888899


Q ss_pred             cHHHHHH-HcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 041785           99 TPLHLAA-KYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYP  175 (181)
Q Consensus        99 t~L~~a~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  175 (181)
                      ||||+|+ ..|+.+++++|++.|+.                         |.||+++|+..|+.+++++|+++|++++
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll~~ga~-------------------------~~taL~~Aa~~g~~evv~lL~~~ga~~~  252 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLLDCPVM-------------------------LAYAEIHEFEYGEKYVNPFIARHVNRLK  252 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHHH-------------------------HHHHHHCTTTTTTTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHhCCCc-------------------------cchHHHHHHHCCCHHHHHHHHhcCcccc
Confidence            9999999 99999999999996532                         6899999999999999999999988764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2e-19  Score=112.64  Aligned_cols=91  Identities=16%  Similarity=0.206  Sum_probs=84.0

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .....+.|+||+|+..|+.+++++|++.|++++.++..|.||||+|  +..++.+++++|++.    +++++.++..|.|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A--~~~~~~~~v~~Ll~~----ga~~~~~d~~g~t   92 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLA--ARNGHLEVVKLLLEA----GADVXAQDKFGKT   92 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCccccccCCCc
Confidence            4456788999999999999999999999999988899999999999  999999999999997    9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHH
Q 041785          100 PLHLAAKYSHFDIVRVL  116 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L  116 (181)
                      |||+|+..++.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999876

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.80  E-value=2.8e-19  Score=129.39  Aligned_cols=96  Identities=18%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             ccCCCHHHHHHHHc---CCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCC
Q 041785           22 QSQMDPNLFKAAAD---GSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGD   98 (181)
Q Consensus        22 ~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (181)
                      ...|.||||+|+..   |+.++++.|++.|++++.+|..|.||||+|  +..++.+++++|++.    |++++.+|..|.
T Consensus       166 ~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A--~~~g~~~~v~~Ll~~----gad~~~~d~~g~  239 (278)
T 1dcq_A          166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC--CLTDNAECLKLLLRG----KASIEIANESGE  239 (278)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred             ccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCccCCCC
Confidence            45689999999999   899999999999999999999999999999  999999999999996    999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhc
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLA  123 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~  123 (181)
                      ||||+|+..|+.+++++|++.|+..
T Consensus       240 tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          240 TPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999998764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=1.8e-18  Score=129.61  Aligned_cols=132  Identities=16%  Similarity=0.060  Sum_probs=89.0

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHH
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLH  102 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (181)
                      ..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|  +..++.+++++|++.    +++++.+|..|.||||
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A--~~~g~~~~v~~LL~~----Gad~~~~d~~G~TpL~  306 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA--TILGHTGLACLFLKR----GADLGARDSEGRDPLT  306 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCcHHHHHHHHHC----cCCCCCcCCCCCCHHH
Confidence            5689999999999999999999999999999999999999999  999999999999997    9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCC--HHHHHHHHHcCCCCC
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN--VEVVKILTREDPDYP  175 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~--~~~~~~Ll~~g~~~~  175 (181)
                      +|+..++.+++++|+..+....               .....+..+.|+++++.....  .+-.+.|..++.+++
T Consensus       307 ~A~~~g~~~iv~lLl~~~~~~~---------------~~~~~~~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~~~  366 (368)
T 3jue_A          307 IAMETANADIVTLLRLAKMREA---------------EAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLH  366 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--------------------------------------------------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCcc---------------cccccCCCCCCHHHHHHHHHhhcCCCHHHHHhcCCCcC
Confidence            9999999999999998874320               012345667888887766542  234556666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.003
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.003

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 7e-12
 Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 18/103 (17%)

Query: 67  ICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHG 126
           +    + ++   V+ ++    +   + +  G TP+ LAA+    ++V  LI+       G
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ------QG 244

Query: 127 DEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR 169
                         +  V+   +TA   A ++ +  +V I  R
Sbjct: 245 AS------------VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.7 bits (91), Expect = 7e-05
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 18/81 (22%)

Query: 98  DTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVS 157
           ++P+ L  + +    +   I R  +                           T LH   S
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDP------------------RHNRTVLHWIAS 42

Query: 158 HGNVEVVKILTREDPDYPYSA 178
           + + E  + L   +     +A
Sbjct: 43  NSSAEKSEDLIVHEAKECIAA 63

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
             T LH  A  S  +    LI           E +  I A    +  ++ ++NT L  AV
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVH---------EAKECIAAGAD-VNAMDCDENTPLMLAV 82

Query: 157 SHGNVE 162
                 
Sbjct: 83  LARRRR 88

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 8e-10
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 18/139 (12%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPA 88
           L  AA  G VE  K +  E+  + +          +      ++++  + +  +L    A
Sbjct: 152 LMDAAEKGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 89  LLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK 148
            +     +G TPL LA +  H  +V+ L+E+              IE     I   +++ 
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQE------------HIE-----INDTDSDG 253

Query: 149 NTALHEAVSHGNVEVVKIL 167
            TAL  AV     ++ ++L
Sbjct: 254 KTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIE 118
            T L + +     E      V+ +LE     +   ++ G T L LA +     I  +L +
Sbjct: 220 KTPLILAV-----EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 119 R 119
           R
Sbjct: 275 R 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 20/94 (21%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERA-------------QLAQHGDEEPESGIEAFRQM 140
              G T L  AA+  H +++++L++                L        +S +EA   +
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 141 -------IRMVNNEKNTALHEAVSHGNVEVVKIL 167
                  + +      T L  AV   ++ +V+ L
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 17/71 (23%)

Query: 96  KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
           + +  L  A +    D+V+ L+E        +                      T LH A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----------------EEGGWTPLHNA 46

Query: 156 VSHGNVEVVKI 166
           V     ++V++
Sbjct: 47  VQMSREDIVEL 57

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
           +  G T    AA Y     ++ L +R        +         ++    +     TAL 
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK--------TKEDQERLRKGGATALM 153

Query: 154 EAVSHGNVEVVKILTREDPDYPYSANNY 181
           +A   G+VEV+KIL  E      + +N 
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNM 181

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 20/131 (15%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIE 118
           N +L   +     +N     V+++LE    +  Q    G TPLH A + S  DIV +L+ 
Sbjct: 6   NHLLIKAV-----QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 119 RAQL---------------AQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEV 163
                              A  G  +      +    +   +    TA  EA  +G V+ 
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 164 VKILTREDPDY 174
           +K L +   + 
Sbjct: 121 LKFLYKRGANV 131

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 8e-10
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 24/139 (17%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPA 88
           L   A +G V     + +  +    T     T LH+       +        + L    A
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV------KFLLQHQA 321

Query: 89  LLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK 148
            +      G +PLH AA+  H DIV +L++      +G                 V+++ 
Sbjct: 322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLK------NGAS------------PNEVSSDG 363

Query: 149 NTALHEAVSHGNVEVVKIL 167
            T L  A   G + V  +L
Sbjct: 364 TTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 18/69 (26%)

Query: 99  TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSH 158
           TPLH+A+   H  IV+ L++R             G         + N +  T LH A   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR-------------GAS-----PNVSNVKVETPLHMAARA 43

Query: 159 GNVEVVKIL 167
           G+ EV K L
Sbjct: 44  GHTEVAKYL 52

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 19/110 (17%)

Query: 72  ENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPE 131
                  V+ +L+   A     N K +TPLH+AA+  H ++ + L++      +  +   
Sbjct: 9   FMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ------NKAK--- 58

Query: 132 SGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANNY 181
                    +     +  T LH A   G+  +VK+L   + +   +    
Sbjct: 59  ---------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 99

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 42/181 (23%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETEN--------------- 73
           L  A    +++  K +               T LHI     + E                
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 228

Query: 74  ---------ASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERA- 120
                    A+ +   E++ +  +     N     G TPLHL A+  H  +  VLI+   
Sbjct: 229 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 288

Query: 121 --------------QLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKI 166
                           + +G+ +    +   +  +        + LH+A   G+ ++V +
Sbjct: 289 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 348

Query: 167 L 167
           L
Sbjct: 349 L 349

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 67  ICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERA------ 120
           +    +    +  E +LE   A        G TPLH+A  +++ DIV++L+ R       
Sbjct: 136 LHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194

Query: 121 ---------QLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVK 165
                      A+    E    +  +       + +  T LH A   G+ E+V 
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 86  CPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVN 145
             A    +  KG TPLH+AAKY    +  +L+ER                          
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-------------DAH-----PNAAG 162

Query: 146 NEKNTALHEAVSHGNVEVVKILTREDPD 173
               T LH AV H N+++VK+L      
Sbjct: 163 KNGLTPLHVAVHHNNLDIVKLLLPRGGS 190

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 93  VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
           V   GDT LHLA  + H   +  L+                  A  + + + N+   TAL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQTAL 49

Query: 153 HEAVSHGNV 161
           H A   G  
Sbjct: 50  HLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 40  PFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT 99
              +M R + ++   ++          +    E  +   +E +L+   A        G T
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRT 227

Query: 100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESG 133
           PL  A    +  + R+L        HG  EPE G
Sbjct: 228 PLGSALLRPNPILARLLRA------HGAPEPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 18/69 (26%)

Query: 99  TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSH 158
           TPLHLA +     ++ +L++              G +              T L  A+  
Sbjct: 194 TPLHLAVEAQAASVLELLLKA-------------GAD-----PTARMYGGRTPLGSALLR 235

Query: 159 GNVEVVKIL 167
            N  + ++L
Sbjct: 236 PNPILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 143 MVNNEKNTALHEAVSHGNVEVVKIL 167
            V  + +TALH AV H +   +  L
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFL 28

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 21/162 (12%)

Query: 19  EIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINI---ICQETENAS 75
            I+  + DP L           F+        S +T+  K  I          ++     
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 76  TKFVEEILE---ICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPES 132
             +            +   +   K +    +AA       +  L     L    +     
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCL---LLTSDEI---- 118

Query: 133 GIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDY 174
                   ++++  E   A   A  +G++ V+  L    P  
Sbjct: 119 --------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 13/88 (14%)

Query: 80  EEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
           + + ++               L         D +R L+    +                 
Sbjct: 262 DGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP------------ 309

Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKIL 167
               +  + N  L  A+  GN     +L
Sbjct: 310 -TATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIE 118
             I  +        +++   +  +L     ++  + A+      LAA+  H  ++  L E
Sbjct: 91  EVICFV--AAITGCSSALDTLCLLLT-SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 147

Query: 119 RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
                               +++ M+  E   A   A  +G++ V+  L    P 
Sbjct: 148 ------LAPT----------EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 186

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 28/192 (14%)

Query: 10  EAPLLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMA-----REVIESSLTVHTKNTILHI 64
            +  L S  +I ++   P +        +E F         +E+  S     +       
Sbjct: 11  TSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGG 70

Query: 65  NIICQETENASTKFVEEILEICPALLLQVNAK----GDTPLHLAAKYSHFDIVRVLIERA 120
           +   Q+   +    ++E+ +  P   L +N      G+TPLH     ++ ++V+ L++  
Sbjct: 71  SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130

Query: 121 QLAQHGDEEPES-------------------GIEAFRQMIRMVNNEKNTALHEAVSHGNV 161
               +GD   ES                    ++     + + ++   T LH  +    +
Sbjct: 131 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 190

Query: 162 EVVKILTREDPD 173
                  +   D
Sbjct: 191 TGCSAAAKYYLD 202

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 23/154 (14%), Positives = 44/154 (28%), Gaps = 28/154 (18%)

Query: 13  LLDSTGEIKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETE 72
            L     ++ S     L        +      A+  ++  +    K     I     E E
Sbjct: 165 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 73  NASTKFVEEILEICPALLLQ-------VNAK---GDTPLHLAAKYSHFDIVRVLIERAQL 122
           +       E  +     L         +NA+   GDT L++AA+  +  IV  L++    
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD---- 280

Query: 123 AQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
             +G +              + N      +    
Sbjct: 281 --YGAD------------PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 15/105 (14%)

Query: 63  HINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQL 122
            +       +      +  I++     +     + ++  +         I+  L  +  +
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 123 AQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           A                M+   ++  +T L+ A   GN+ +V  L
Sbjct: 249 AN---------------MLNAQDSNGDTCLNIAARLGNISIVDAL 278

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 3e-07
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 18/88 (20%)

Query: 78  FVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
            + ++L    A +      G + LH A+      +VR L+        G +         
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR------SGAD--------- 202

Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVK 165
                + N   +T L  A S   +++++
Sbjct: 203 ---SSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 6e-07
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           GDTPLH+A    +   V  L+      Q G E            + + NN + T LH AV
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVN--LFQQGGRE------------LDIYNNLRQTPLHLAV 48

Query: 157 SH 158
             
Sbjct: 49  IT 50

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 15/117 (12%)

Query: 66  IICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQH 125
           ++C    +   + ++E +    +L  + +    T LH A    H +IV  L++       
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 126 GDEEPESGIEAFRQ---------------MIRMVNNEKNTALHEAVSHGNVEVVKIL 167
            D+   S +                     +  VN    T LH A S    E+  +L
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 122

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 7e-07
 Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 21/154 (13%)

Query: 29  LFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPA 88
           L  A + G  E  + + +  +  +       + LHI              + + L    A
Sbjct: 41  LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG------RDEIVKALLGKGA 94

Query: 89  LLLQVNAKGDTPLHLAAKYSHFDIVRVLIERA---------------QLAQHGDEEPESG 133
            +  VN  G TPLH AA  +  +I  +L+E                 + A  G+ +    
Sbjct: 95  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 154

Query: 134 IEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           +  ++    + + E NT LH A     VE  K+L
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 188

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 29/130 (22%)

Query: 42  KDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILEICPALLLQVNAKG 97
            ++A  ++E       K+    T +H               +  IL    A     + +G
Sbjct: 116 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL------KMIHILLYYKASTNIQDTEG 169

Query: 98  DTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVS 157
           +TPLHLA      +  ++L+        G              I + N E+ T L  A  
Sbjct: 170 NTPLHLACDEERVEEAKLLVS------QGAS------------IYIENKEEKTPLQVA-K 210

Query: 158 HGNVEVVKIL 167
            G   ++K +
Sbjct: 211 GGLGLILKRM 220

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 3e-06
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 17/64 (26%)

Query: 98  DTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVS 157
           + PLH A   + F  V+ L+                       +   + +    LH +VS
Sbjct: 1   NYPLHQACMENEFFKVQELLHS-----KPSL------------LLQKDQDGRIPLHWSVS 43

Query: 158 HGNV 161
               
Sbjct: 44  FQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 3e-05
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 25/112 (22%)

Query: 56  HTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRV 115
                 LH        +            +        + +G TPL  A    H D   +
Sbjct: 136 KFNQIPLHRAASVGSLKLIELLCGLGKSAVN-----WQDKQGWTPLFHALAEGHGDAAVL 190

Query: 116 LIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
           L+E+     +G E              +V+N+   A   A++    +V K  
Sbjct: 191 LVEK-----YGAE------------YDLVDNKGAKAEDVALNE---QVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 8e-05
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSH 109
           N  LH               V+E+L   P+LLLQ +  G  PLH +  +  
Sbjct: 1   NYPLHQAC-----MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 5e-04
 Identities = 7/33 (21%), Positives = 10/33 (30%)

Query: 149 NTALHEAVSHGNVEVVKILTREDPDYPYSANNY 181
           N  LH+A        V+ L    P      +  
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQD 33

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 3/53 (5%)

Query: 67  ICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER 119
           +              ++E   A    V+ KG     +A    +  + +  +  
Sbjct: 176 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 23/127 (18%)

Query: 64  INIICQETENASTKFVEEILE-----ICPALLLQVNAKGDTPLHLAAK---YSHFDIVRV 115
           ++ +C+  +      + +             L   +   +T LHLA +    +   IV  
Sbjct: 7   LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 66

Query: 116 LIE---------------RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGN 160
           L++                       + E    +   +  I + N    T L  A    +
Sbjct: 67  LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 126

Query: 161 VEVVKIL 167
               ++L
Sbjct: 127 EHCEELL 133

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 6e-04
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 94  NAKGDTPLHLAAKYSHFDIVRVLIE 118
           N  G+TPL +A +  H     +L +
Sbjct: 111 NESGETPLDIAKRLKHEHCEELLTQ 135

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 6e-06
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 92  QVNAKGDTPLHLAAKYSHFDIVRVLIER 119
             N KGDT   LA  Y   ++V ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 2e-04
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
               +   N++ +TA   A  +G  EVV ++
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 7e-06
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 56  HTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRV 115
               T LH+ +  Q  +  S          C A + +V  +G +P  L        I + 
Sbjct: 143 CNGRTALHLAVDLQNPDLVSLLL------KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 196

Query: 116 LIERAQLAQHGDEEPES 132
           L +     ++    PES
Sbjct: 197 LGQL--TLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 14/62 (22%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           GD+ LHLA  +    +   +I   Q+                  +   NN + T LH AV
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIR--QVKGDLAF------------LNFQNNLQQTPLHLAV 47

Query: 157 SH 158
             
Sbjct: 48  IT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.002
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 18/71 (25%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
           G T LHLA    + D+V +L+      + G +            +  V  +  +      
Sbjct: 145 GRTALHLAVDLQNPDLVSLLL------KCGAD------------VNRVTYQGYSPYQLTW 186

Query: 157 SHGNVEVVKIL 167
              +  + + L
Sbjct: 187 GRPSTRIQQQL 197

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 28/109 (25%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIE 118
            T LH+      TE      V ++L      +   +  G TPLH AA +   +  R+L+E
Sbjct: 200 GTALHVAAAKGYTE------VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 119 RAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
                 +  +            +  VN    TA   A      +++  L
Sbjct: 254 ------NLCD------------MEAVNKVGQTAFDVADE----DILGYL 280

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 10/50 (20%), Positives = 16/50 (32%)

Query: 118 ERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
              QL +    E +      ++    V  +       A S G+ E V  L
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRL 59

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 85  ICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIE 118
              + L + +A+G TPL LA +    D+V +L  
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 141 IRMVNNEKNTALHEAVSHGNVEVVKIL 167
           +   +    T L  A+  G  ++V IL
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDIL 152

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 63  HINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQL 122
                       + + + E L    A +   +  G T LH AA  ++ + V +L+     
Sbjct: 89  DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN 148

Query: 123 AQHGDEEPESGIEAFRQM---------------IRMVNNEKNTALHEAVSHGNVEVVKIL 167
               D++ E+ +    +                  + ++        A    + ++V++L
Sbjct: 149 RDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 75  STKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVL 116
           + + + ++L     L   ++  G+T LHLAA+++  D  + L
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 59  NTILHINIICQETENASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRV 115
           +      +       A+    +E++E+       V+ +     T   ++    + D+  +
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

Query: 116 L 116
           L
Sbjct: 152 L 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 2e-04
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 141 IRMVNNEKNTALHEAVSHGNVEVVKIL 167
           +   +    TA   ++ +GN ++ +IL
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 99  TPLHLAAKYSHFDIVRVLIER 119
             L  AA+    D VR+L+  
Sbjct: 4   KKLLEAARAGQDDEVRILMAN 24

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 3e-04
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIERA 120
           G  P+ LA +  H D+ R L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.7 bits (75), Expect = 0.003
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 97  GDTPLHLAAKYSHFDIVRVLIER 119
            D     A K    D V+  + +
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAK 24

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.86
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.85
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.82
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.81
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.79
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.74
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.71
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.69

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-28  Score=156.29  Aligned_cols=121  Identities=16%  Similarity=0.079  Sum_probs=112.1

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCC-cHHH
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGD-TPLH  102 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-t~L~  102 (181)
                      ++.++||+|+..|+.+++++|++.|++++.++..|.||+|+|  + .++.+++++|++.    +++++.++..+. ||||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a--~-~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM--M-MGSARVAELLLLH----GAEPNCADPATLTRPVH   74 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS--C-TTCHHHHHHHHTT----TCCCCCCCTTTCCCHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc--c-ccccccccccccc----ccccccccccccccccc
Confidence            456889999999999999999999999999999999999976  4 6899999999987    899999988765 6999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHH
Q 041785          103 LAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR  169 (181)
Q Consensus       103 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  169 (181)
                      +|+..|+.+++++|++.|+++                  +.+|..|+||||+|++.|+.+++++|++
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~~------------------~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGARL------------------DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCS------------------SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccc------------------ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999988                  8999999999999999999999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.5e-27  Score=162.69  Aligned_cols=155  Identities=21%  Similarity=0.202  Sum_probs=132.2

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      ..+..|.||||+|+..|+.+++++++..+......+..+.++++.+  +..++.+++++|++.    +.+++.+|..|.|
T Consensus        32 ~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Ll~~----~~d~~~~d~~g~t  105 (223)
T d1uoha_          32 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA--ASAGRDEIVKALLGK----GAQVNAVNQNGCT  105 (223)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTCCC
T ss_pred             CcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccc--ccccccchhHHHhcc----CceeEeeCCCCCc
Confidence            4456789999999999999999999998877776777888999999  889999999999886    8889999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------------HHHhhcccCCCchHHHHHHHcCCHHHH
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------------RQMIRMVNNEKNTALHEAVSHGNVEVV  164 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~  164 (181)
                      |||+|+..++.+++++|++.|.++...+..+.......               +.+++.+|..|+||||+|+..|+.+++
T Consensus       106 pL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v  185 (223)
T d1uoha_         106 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA  185 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             hhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHH
Confidence            99999999999999999999988765555544443322               235688999999999999999999999


Q ss_pred             HHHHHcCCCCCCCcCC
Q 041785          165 KILTREDPDYPYSANN  180 (181)
Q Consensus       165 ~~Ll~~g~~~~~~~~~  180 (181)
                      ++|+++|++++.++.+
T Consensus       186 ~~LL~~Gad~~~~d~~  201 (223)
T d1uoha_         186 KLLVSQGASIYIENKE  201 (223)
T ss_dssp             HHHHHTTCCSCCCCTT
T ss_pred             HHHHHCCCCCCCCCCC
Confidence            9999999999987753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=9.6e-29  Score=155.78  Aligned_cols=107  Identities=19%  Similarity=0.159  Sum_probs=102.3

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHH
Q 041785           26 DPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAA  105 (181)
Q Consensus        26 ~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~  105 (181)
                      +|||++|++.|+.++++.|++.|++++.++..|.||||+|  +..++.++++++++.    +++++.+|..|+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A--~~~~~~~~~~~ll~~----g~din~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA--ADCGQLEILEFLLLK----GADINAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHH--HHHSTTTHHHHHHHS----SCTTTCCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccc--ccccccccccccccc----cceeeecccccccchhhhh
Confidence            4899999999999999999999999999999999999999  999999999999986    9999999999999999999


Q ss_pred             HcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHH
Q 041785          106 KYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV  156 (181)
Q Consensus       106 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  156 (181)
                      ..++.+++++|++.|+++                  +.+|..|+||||+|.
T Consensus        77 ~~~~~~~v~~Ll~~Gad~------------------~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADK------------------TVKGPDGLTALEATD  109 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCS------------------SSSSSSTCCCCCTCS
T ss_pred             hcCchhhhhhhhcccccc------------------eeeCCCCCCHHHHHh
Confidence            999999999999999988                  899999999999884

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.7e-27  Score=151.56  Aligned_cols=122  Identities=20%  Similarity=0.269  Sum_probs=110.5

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAK  106 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~  106 (181)
                      ++|+.|+..|+.+++++|++.|++++.++..|.||||+|  +..++.++++++++.    +.+++.+|..|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A--~~~~~~~~~~~ll~~----g~~~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA--VCAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccc--ccccccccccccccc----ccccccccccCcccccccch
Confidence            679999999999999999999999999999999999999  999999999999997    89999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhccc-CCCchHHHHH--HHcCCHHHHHHHHHcCC
Q 041785          107 YSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVN-NEKNTALHEA--VSHGNVEVVKILTREDP  172 (181)
Q Consensus       107 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~Ll~~g~  172 (181)
                      .|+.+++++|++.|+++                  +..+ ..++||++++  +..|+.+++++|++.+.
T Consensus        77 ~g~~~~v~~Ll~~ga~v------------------~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAV------------------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             TTCHHHHHHHHHTTCCT------------------TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCc------------------ccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            99999999999999987                  5555 4578886665  56788999999987543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.8e-26  Score=162.92  Aligned_cols=150  Identities=17%  Similarity=0.125  Sum_probs=100.4

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHH------------------
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEIL------------------   83 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~------------------   83 (181)
                      ...|.||||+|+..|+.++++.|++.|++++.++..|.||||+|  +..++.++++.+++..                  
T Consensus        42 ~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  119 (255)
T d1oy3d_          42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA--CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC  119 (255)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH--TTTTCHHHHHHHSSSCCSSCCCC-----------
T ss_pred             CCCCCCccchHHhhcccccccccccccccccccccccchhhhhh--hccCchHHHHHHHhhccchhcccchhhhhHHhhh
Confidence            44677888888888888888888888887777788888888888  7777777776664320                  


Q ss_pred             -------------------------hhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCC-CCCcchHHHH
Q 041785           84 -------------------------EICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGD-EEPESGIEAF  137 (181)
Q Consensus        84 -------------------------~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~~~~~  137 (181)
                                               ...+..++.++..|.||||+|+..++.+++++|++.+....... ..+..+....
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A  199 (255)
T d1oy3d_         120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA  199 (255)
T ss_dssp             ------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             cccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccccccc
Confidence                                     00123444567778899999999999999999988877663211 1122111110


Q ss_pred             ---------------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785          138 ---------------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus       138 ---------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                                     +.+++.+|..|+||||+|+..++.+++++|+++||+
T Consensus       200 ~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence                           124556666677777777777777777777777765

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.3e-26  Score=160.55  Aligned_cols=93  Identities=19%  Similarity=0.134  Sum_probs=85.4

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHHHHhccc---ccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMAREVIES---SLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~---~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      .+|.||||+|++.|+.+++++|++.|++.   +.++..|.||||+|  +..++.++++.|++.    |++++.+|..|.|
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A--~~~g~~~iv~~Ll~~----ga~i~~~d~~g~t   80 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AILGEASTVEKLYAA----GAGVLVAERGGHT   80 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCSSCCCTTSCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchH--Hhhcccccccccccc----cccccccccccch
Confidence            47899999999999999999999988763   46788999999999  999999999999987    9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhh
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQ  121 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~  121 (181)
                      |||+|+..++.+++++|++.+.
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~  102 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRP  102 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCC
T ss_pred             hhhhhhccCchHHHHHHHhhcc
Confidence            9999999999999999987653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=9.1e-26  Score=162.19  Aligned_cols=152  Identities=22%  Similarity=0.252  Sum_probs=129.0

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...+.|+|+.|+..|+.++|++|++.|++++.+|..|.||||+|  +..|+.+++++|++.    +.+....+..+.+||
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A--~~~g~~eiv~~Ll~~----~~~~~~~~~~~~~~L  110 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVEN----GANINQPDNEGWIPL  110 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHH--HhcCCceeeeeeccc----ccccccccccccccc
Confidence            34456999999999999999999999999999999999999999  999999999999997    888888888999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHH---------------------------------------------
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA---------------------------------------------  136 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~---------------------------------------------  136 (181)
                      +.++..++.++++.|++.+......+.+.......                                             
T Consensus       111 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (291)
T d1s70b_         111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (291)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccc
Confidence            99999999999999999886554333322221100                                             


Q ss_pred             ------------H------------------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          137 ------------F------------------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       137 ------------~------------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                                  +                  +.+++.++..|+||||+|+..|+.+++++|+++|++++.+++
T Consensus       191 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~  263 (291)
T d1s70b_         191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (291)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence                        0                  124667899999999999999999999999999999998865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=9.8e-26  Score=147.75  Aligned_cols=121  Identities=21%  Similarity=0.196  Sum_probs=107.4

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH-----------------------
Q 041785           26 DPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI-----------------------   82 (181)
Q Consensus        26 ~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~-----------------------   82 (181)
                      .|||+.|++.|+.++++.|++.|++.+ .+..|.||||+|  +..++.+.+..+...                       
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLA--AQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHH--HHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccc--cccccccccccccccccccccccccccccccccccccc
Confidence            489999999999999999999998765 588999999999  888888877766553                       


Q ss_pred             ------HhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHH
Q 041785           83 ------LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV  156 (181)
Q Consensus        83 ------~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~  156 (181)
                            +...+.+.+.++..|+||||+|+..|+.+++++|++.|+++                  +.+|..|.||||+|+
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~------------------~~~d~~g~Tpl~~A~  141 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV------------------HTQSKFCKTAFDISI  141 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCC------------------cccCCCCCCHHHHHH
Confidence                  22345677778999999999999999999999999999998                  889999999999999


Q ss_pred             HcCCHHHHHHH
Q 041785          157 SHGNVEVVKIL  167 (181)
Q Consensus       157 ~~~~~~~~~~L  167 (181)
                      ..|+.+++++|
T Consensus       142 ~~g~~eiv~lL  152 (153)
T d1awcb_         142 DNGNEDLAEIL  152 (153)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHhC
Confidence            99999999976

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.6e-25  Score=145.86  Aligned_cols=123  Identities=16%  Similarity=0.178  Sum_probs=110.3

Q ss_pred             HHHHHHHcCCcHHHHHHHHHhccccc------ccCCCCchhHHHHhhh---hhhhhHHHHHHHHHhhccccccccccCCC
Q 041785           28 NLFKAAADGSVEPFKDMAREVIESSL------TVHTKNTILHINIICQ---ETENASTKFVEEILEICPALLLQVNAKGD   98 (181)
Q Consensus        28 ~l~~a~~~g~~~~~~~ll~~~~~~~~------~~~~g~t~Lh~a~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (181)
                      .|+.|++.+++..+..++..|.+...      .+..|.||||+|  +.   .+..+++++|++.    |++++.+|..|+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~iv~~Ll~~----gadin~~d~~g~   82 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA--VRSVDRTSLHIVDFLVQN----SGNLDKQTGKGS   82 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHH--HHHCCTTTHHHHHHHHHH----CSCTTCCCTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHH--HHhcCCCCHHHHHHHHHc----CCChhhhhhhhc
Confidence            46788999999999999998876553      266799999999  75   3677899999987    999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                      ||||+|+..|+.+++++|++.|+++                  +.+|..|+||||+|++.|+.+++++|++.++..
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~gad~------------------~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKASI------------------EIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccccCccc------------------cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999999998                  899999999999999999999999999977654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=147.86  Aligned_cols=138  Identities=19%  Similarity=0.131  Sum_probs=106.9

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAK  106 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~  106 (181)
                      ++||+|+..|+.++++.|++.|++++.+|..|.||||+|  + .++.+++++|++.    +++++.++..+.++++.++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A--~-~~~~ei~~~Ll~~----~a~~~~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--K-LGNPEIARRLLLR----GANPDLKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--C-SSCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCccccccccc--c-ccccccccccccc----ccccccccccCccccccccc
Confidence            678888888888888888888888888888888888876  5 5778888888875    77777777777888888888


Q ss_pred             cCCHHHHHHHHHhhhhccCCCCCCcchHHHH---------H-------HHhhcccCCCchHHHHHHHcCCHHHHHHHHHc
Q 041785          107 YSHFDIVRVLIERAQLAQHGDEEPESGIEAF---------R-------QMIRMVNNEKNTALHEAVSHGNVEVVKILTRE  170 (181)
Q Consensus       107 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---------~-------~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  170 (181)
                      .+..++++++++.+......+..+.......         .       .+.+.+|..|.||||+|++.++.+++++|+++
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          76 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            8888888777777766644444443332211         0       13577888999999999999999999999998


Q ss_pred             C
Q 041785          171 D  171 (181)
Q Consensus       171 g  171 (181)
                      |
T Consensus       156 G  156 (156)
T d1ihba_         156 G  156 (156)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.7e-25  Score=151.92  Aligned_cols=140  Identities=16%  Similarity=0.144  Sum_probs=92.9

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccc---cccCCCCchhHHHHhhhhhhhhHHHHHHHH----------------
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESS---LTVHTKNTILHINIICQETENASTKFVEEI----------------   82 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~---~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~----------------   82 (181)
                      ..+|.||||+|+..|+.+++++|++.|++++   ..+..|.+|+|++  +..+..++++.++..                
T Consensus        31 d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d1ixva_          31 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA--CSVGNLEVVKSLYDRPLKPDLNKITNQGVTC  108 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHH--HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCH
T ss_pred             CCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            4566777777777777777777777665543   3344566666666  555555444443322                


Q ss_pred             ---------------HhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCC
Q 041785           83 ---------------LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNE  147 (181)
Q Consensus        83 ---------------~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (181)
                                     +...+...+.++..|+||||+|+..++.+++++|++.+...                 ++.+|..
T Consensus       109 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-----------------in~~d~~  171 (229)
T d1ixva_         109 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-----------------VNWQDKQ  171 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC-----------------SCCCCTT
T ss_pred             cccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccc-----------------ccccccc
Confidence                           11123344445556666666666666666666666655332                 4788999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHH-cCCCCCCCcCC
Q 041785          148 KNTALHEAVSHGNVEVVKILTR-EDPDYPYSANN  180 (181)
Q Consensus       148 g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~  180 (181)
                      |+||||+|+..|+.+++++|++ .|++++.++++
T Consensus       172 g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~  205 (229)
T d1ixva_         172 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK  205 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTT
T ss_pred             cCCchhhhcccccHHHHHHHHHhcCCCCCCcCCC
Confidence            9999999999999999999997 59999988764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=3.1e-25  Score=158.07  Aligned_cols=152  Identities=16%  Similarity=0.150  Sum_probs=121.9

Q ss_pred             cCCCHHHHHHHHcCCcHHHHHHH--------HHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccc
Q 041785           23 SQMDPNLFKAAADGSVEPFKDMA--------REVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVN   94 (181)
Q Consensus        23 ~~~~t~l~~a~~~g~~~~~~~ll--------~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   94 (181)
                      ..|.||||+|+..|+.++++.|+        +.|++++.+|..|.||||+|  +..|+.+++++|++.    |++++.++
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A--~~~g~~~iv~~Ll~~----Gad~n~~~  104 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA--VLARRRRLVAYLMKA----GADPTIYN  104 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHT----TCCSCCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccc--ccccccccccccccc----cccccccc
Confidence            35899999999999999888775        45778888999999999999  999999999999997    99999999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhhhhc---cCCCCCCc----------------------------------------
Q 041785           95 AKGDTPLHLAAKYSHFDIVRVLIERAQLA---QHGDEEPE----------------------------------------  131 (181)
Q Consensus        95 ~~g~t~L~~a~~~~~~~~~~~L~~~~~~~---~~~~~~~~----------------------------------------  131 (181)
                      ..|.|||++|+..++.++++++...+...   ........                                        
T Consensus       105 ~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (277)
T d2fo1e1         105 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK  184 (277)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred             ccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccc
Confidence            99999999999999999988887654321   11000000                                        


Q ss_pred             ----chHHH---------H-------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          132 ----SGIEA---------F-------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       132 ----~~~~~---------~-------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                          .....         .       +.+.+.+|..|+||||+|+..|+.+++++|+++|++++.+++.
T Consensus       185 ~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~  253 (277)
T d2fo1e1         185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT  253 (277)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSS
T ss_pred             cCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCC
Confidence                00000         0       0234567899999999999999999999999999999987654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-25  Score=153.85  Aligned_cols=124  Identities=19%  Similarity=0.157  Sum_probs=115.0

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....|.||||+|+..|+.+++++|++.|++++.++..|.||||+|  +..++..+++.|...    +.+++.++..|+||
T Consensus        99 ~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a--~~~~~~~~~~~L~~~----~~~i~~~d~~g~Tp  172 (223)
T d1uoha_          99 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA--AAKGNLKMIHILLYY----KASTNIQDTEGNTP  172 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCSCCCCTTCCCH
T ss_pred             eCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhh--hhcCCcchhhhhccc----cceeeeccCCCCce
Confidence            455788999999999999999999999999988899999999999  999999999888876    89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHH
Q 041785          101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR  169 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  169 (181)
                      ||+|+..|+.+++++|++.|+++                  +.+|..|+||||+| ..|+.+++++|++
T Consensus       173 L~~Aa~~g~~~~v~~LL~~Gad~------------------~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         173 LHLACDEERVEEAKLLVSQGASI------------------YIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCS------------------CCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eccccccCcHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999999998                  89999999999998 5789999999985

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.5e-25  Score=143.90  Aligned_cols=123  Identities=18%  Similarity=0.142  Sum_probs=107.1

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||||+|+ .|+.+++++|++.+.+++..+..|.+|++.+  +..++.++++.+++.    +.+++.++..|.|||
T Consensus        33 d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~~----~~~~n~~~~~~~t~L  105 (156)
T d1bd8a_          33 NRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDA--ARTGFLDTLKVLVEH----GADVNVPDGTGALPI  105 (156)
T ss_dssp             CTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCSCCCCTTSCCHH
T ss_pred             CCCCCccccccc-ccccccccccccccccccccccccccccccc--ccccccccccccccc----ccccccccCCCCeee
Confidence            456788999876 4788899999988888887788889999998  888888888888886    788888899999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHc
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE  170 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  170 (181)
                      |+|+..|+.+++++|+ .++++                  +.+|..|+||||+|++.|+.+++++|+++
T Consensus       106 ~~A~~~~~~~i~~~L~-~~~~~------------------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         106 HLAVQEGHTAVVSFLA-AESDL------------------HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTCHHHHHHHH-TTSCT------------------TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccc-ccccc------------------cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999998887 56666                  88999999999999999999999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.7e-24  Score=146.13  Aligned_cols=151  Identities=19%  Similarity=0.204  Sum_probs=118.4

Q ss_pred             CCCHHHHHHHHcCCcHHHHHHHH----HhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           24 QMDPNLFKAAADGSVEPFKDMAR----EVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~~~ll~----~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      +|.||||+|+..|+.++++.|++    .|++++.+|..|.||||+|  +..++.++++.|++.    ++..+.....+.+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A--~~~~~~~iv~~Ll~~----ga~~~~~~~~~~~   75 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA--VITTLPSVVRLLVTA----GASPMALDRHGQT   75 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceeh--hcccccccccccccc----ccccccccccccc
Confidence            68999999999999999999886    6777888899999999999  999999999999986    8888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhcc--------------------------------------CCCCCCcchHHHH----
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQ--------------------------------------HGDEEPESGIEAF----  137 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~--------------------------------------~~~~~~~~~~~~~----  137 (181)
                      +++.|...++.++++.+........                                      .............    
T Consensus        76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~  155 (228)
T d1k1aa_          76 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  155 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhh
Confidence            8888888888887776655432110                                      0000111111110    


Q ss_pred             -----------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          138 -----------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       138 -----------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                                 +..++.+|..|.||||+|+..|+.+++++|+++|++++.++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~  209 (228)
T d1k1aa_         156 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH  209 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             hhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence                       1235678899999999999999999999999999999988653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3e-24  Score=155.40  Aligned_cols=154  Identities=14%  Similarity=0.107  Sum_probs=112.6

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhh---hhHHHHHHHHHhhccccccccccCCC
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETE---NASTKFVEEILEICPALLLQVNAKGD   98 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (181)
                      +..|.||||+|+..|+.++++.|++.|++++.+|..|.||||.|  +..++   ...+..+++.+   ...+..+|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A--~~~~~~~~~~~~~~ll~~l---~~~~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA--VKSVNNYDSGTFEALLDYL---YPCLILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHH--HHSSHHHHTTCHHHHHHHH---GGGGGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHh--hhcccchhhhhHHHHHHHH---hhhhhhcccccC
Confidence            45789999999999999999999999999999999999999999  77664   34445555553   445677888999


Q ss_pred             cHHHHHHHcCC----HHHH--------HHHHHhhhhccCCC-CCCcc------------------hHHHHHHHhhcccCC
Q 041785           99 TPLHLAAKYSH----FDIV--------RVLIERAQLAQHGD-EEPES------------------GIEAFRQMIRMVNNE  147 (181)
Q Consensus        99 t~L~~a~~~~~----~~~~--------~~L~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~  147 (181)
                      ||||+++..+.    ..++        .+++..+....... .....                  ........++.+|..
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            99998875543    3333        33444333221000 00000                  011112347889999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          148 KNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       148 g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                      |+||||+|++.|+.+++++|+++|++++.++++
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~  291 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKS  291 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            999999999999999999999999999998764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.1e-24  Score=151.85  Aligned_cols=138  Identities=21%  Similarity=0.202  Sum_probs=118.1

Q ss_pred             hhcccCCCHHHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHh--hhhhhhhHHHHHHHHHhhcccccccccc
Q 041785           19 EIKQSQMDPNLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINII--CQETENASTKFVEEILEICPALLLQVNA   95 (181)
Q Consensus        19 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~   95 (181)
                      ......|.||||+|++.|+.+++++|++. |++++..+..|.++++.+..  .......++++|++.    |++++.++.
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~----ga~~n~~~~  217 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGE  217 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT----TCCSSCCCT
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC----CCCCCccCC
Confidence            34456789999999999999999999984 67777788889888776510  223344567777765    999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh-hhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785           96 KGDTPLHLAAKYSHFDIVRVLIER-AQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus        96 ~g~t~L~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                      .|.||||+|+..++.+++++|++. |.++                  +.+|..|.||||+|++.|+.+++++|+++||++
T Consensus       218 ~g~t~L~~a~~~~~~~~v~~lL~~~g~di------------------n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         218 RGKTPLILAVEKKHLGLVQRLLEQEHIEI------------------NDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHSSSCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             CCCCccchhhhcCcHHHHHHHHHcCCCCC------------------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            999999999999999999999985 6676                  889999999999999999999999999999999


Q ss_pred             CCCc
Q 041785          175 PYSA  178 (181)
Q Consensus       175 ~~~~  178 (181)
                      +.+|
T Consensus       280 n~~d  283 (285)
T d1wdya_         280 DCGD  283 (285)
T ss_dssp             CCSS
T ss_pred             Cccc
Confidence            9876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-23  Score=156.39  Aligned_cols=146  Identities=21%  Similarity=0.255  Sum_probs=120.1

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHH
Q 041785           27 PNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAK  106 (181)
Q Consensus        27 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~  106 (181)
                      ||||+|+..|+.++|++|++.|++++..|..|.||||+|  +..|+.+++++|++.    |++++.++..|+||||+|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A--~~~g~~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHHH
Confidence            899999999999999999999999998999999999999  999999999999998    99999999999999999999


Q ss_pred             cCCHHHHHHHHHhhhhccCCCCCCc---------------------------------chHH---------HHH------
Q 041785          107 YSHFDIVRVLIERAQLAQHGDEEPE---------------------------------SGIE---------AFR------  138 (181)
Q Consensus       107 ~~~~~~~~~L~~~~~~~~~~~~~~~---------------------------------~~~~---------~~~------  138 (181)
                      .|+.+++++|+..............                                 ....         ..+      
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~  155 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  155 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999987654421111111                                 1000         001      


Q ss_pred             HHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCc
Q 041785          139 QMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSA  178 (181)
Q Consensus       139 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  178 (181)
                      ..++..+..|.+||++|+..++.+++++|+.+|++++..+
T Consensus       156 ~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  195 (408)
T d1n11a_         156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA  195 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC
T ss_pred             CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccC
Confidence            2345667788889999999999999999998888877654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=1e-23  Score=150.13  Aligned_cols=129  Identities=16%  Similarity=0.195  Sum_probs=109.8

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH------------------
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI------------------   82 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~------------------   82 (181)
                      ....|.||||+|+..|+.+++++|++.|++++.++..|.|||++|  +..++.+++..+...                  
T Consensus        70 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  147 (277)
T d2fo1e1          70 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA--AANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL  147 (277)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH--HHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred             cCCCCCeeeccccccccccccccccccccccccccccccccccch--hhhcchhhhhhhhhcccccccccccccccchhH
Confidence            456899999999999999999999999999998899999999999  777766555444221                  


Q ss_pred             -----------------------------------------------------------HhhccccccccccCCCcHHHH
Q 041785           83 -----------------------------------------------------------LEICPALLLQVNAKGDTPLHL  103 (181)
Q Consensus        83 -----------------------------------------------------------~~~~~~~~~~~~~~g~t~L~~  103 (181)
                                                                                 +...+.+.+.+|..|+||||+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~  227 (277)
T d2fo1e1         148 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML  227 (277)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred             HHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHH
Confidence                                                                       112234445577889999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHH
Q 041785          104 AAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR  169 (181)
Q Consensus       104 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  169 (181)
                      |+..|+.+++++|++.|+++                  +.+|..|+||||+|++.|+.+++++|++
T Consensus       228 A~~~g~~~iv~~Ll~~gadi------------------n~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         228 AAQEGRIEVVMYLIQQGASV------------------EAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCS------------------SCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHCcCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999988                  8999999999999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.8e-24  Score=146.67  Aligned_cols=140  Identities=23%  Similarity=0.214  Sum_probs=102.5

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhc--cccccccccCCC
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEIC--PALLLQVNAKGD   98 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~g~   98 (181)
                      ....|.||||+|+..|+.+++++|++.|++++..+..|.+|||++  +..+..++++.++......  ..........|.
T Consensus        35 ~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  112 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA--CEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  112 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH--HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             CCCCCCccccccccccccccccccccccccccccccccccccccc--cccccccccchhhhhcccccccccccccccccc
Confidence            455678888888888888888888888877777778888888888  7777777777776642110  112222334567


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhc-ccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRM-VNNEKNTALHEAVSHGNVEVVKILTREDPDYPYS  177 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  177 (181)
                      ||||.|+..++.+++++++..+...                  +. .+..|+||||+|++.|+.+++++|+++|+|++.+
T Consensus       113 t~l~~a~~~~~~~~~~~l~~~~~~~------------------~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~  174 (221)
T d1iknd_         113 TCLHLASIHGYLGIVELLVSLGADV------------------NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV  174 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCT------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCC
T ss_pred             hhhhHHhhcCChhheeeecccCccc------------------ccccccCCCCccccccccccHHHHHHHHhcCCccccc
Confidence            7777777777777777777776665                  33 3467899999999999999999999999999887


Q ss_pred             cCC
Q 041785          178 ANN  180 (181)
Q Consensus       178 ~~~  180 (181)
                      ++.
T Consensus       175 ~~~  177 (221)
T d1iknd_         175 TYQ  177 (221)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.6e-23  Score=136.70  Aligned_cols=126  Identities=21%  Similarity=0.262  Sum_probs=114.9

Q ss_pred             HHHHHHHcCCcHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHH
Q 041785           28 NLFKAAADGSVEPFKDMARE-VIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAK  106 (181)
Q Consensus        28 ~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~  106 (181)
                      .|+.|+..|+.+.|+.|+.. +.+++.+|..|.||||+|  +. ++.++++.|++.    +.+++..+..|.+|++.++.
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A--~~-~~~~~v~~Ll~~----~~~~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM--MF-GSTAIALELLKQ----GASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHS--CT-TCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccc--cc-cccccccccccc----cccccccccccccccccccc
Confidence            49999999999999999985 678888899999999998  64 778999999886    88899999999999999999


Q ss_pred             cCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          107 YSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       107 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      .++.++++++++.++++                  +.+|..|.||||+|+..|+.+++++|+ .|++++.++.
T Consensus        78 ~~~~~~~~~~l~~~~~~------------------n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~  131 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGADV------------------NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDA  131 (156)
T ss_dssp             TTCHHHHHHHHHTTCCS------------------CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCT
T ss_pred             ccccccccccccccccc------------------ccccCCCCeeecccccccccccccccc-ccccccccCC
Confidence            99999999999999887                  888999999999999999999999888 7889887765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.1e-24  Score=134.87  Aligned_cols=98  Identities=19%  Similarity=0.213  Sum_probs=93.2

Q ss_pred             CchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHH
Q 041785           59 NTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFR  138 (181)
Q Consensus        59 ~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  138 (181)
                      .|||++|  ++.|+.++++.|++.    |++++.++..|+||||+|+..++.+++++|++.|+++               
T Consensus         3 ~tpL~~A--~~~g~~~~v~~Ll~~----g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di---------------   61 (118)
T d1myoa_           3 DKEFMWA--LKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI---------------   61 (118)
T ss_dssp             HHHHHHH--HHTTCHHHHHHHHTT----TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT---------------
T ss_pred             ChHHHHH--HHCCCHHHHHHHHHh----hhcccccccccccccccccccccccccccccccccee---------------
Confidence            5899999  999999999999986    8999999999999999999999999999999999988               


Q ss_pred             HHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          139 QMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       139 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                         +.+|..|+||||+|+..|+.+++++|+++|++++.++++
T Consensus        62 ---n~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~  100 (118)
T d1myoa_          62 ---NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD  100 (118)
T ss_dssp             ---TCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSS
T ss_pred             ---eecccccccchhhhhhcCchhhhhhhhcccccceeeCCC
Confidence               889999999999999999999999999999999987653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.3e-23  Score=153.68  Aligned_cols=133  Identities=23%  Similarity=0.216  Sum_probs=117.1

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...|.||++.|+..++.+++++|++.|++++..+..+.||||.+  +..++.++++.+++.    |++++.+|..|.|||
T Consensus       261 ~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~--~~~~~~~~~~~ll~~----g~~in~~d~~G~T~L  334 (408)
T d1n11a_         261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA--SHYGNIKLVKFLLQH----QADVNAKTKLGYSPL  334 (408)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHH--HHSSCSHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             cCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhh--cccCcceeeeeeccc----cccccccCCCCCCHH
Confidence            44678999999999999999999999999888888899999999  899999999998886    899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHH---HcCCCCCCCc
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT---REDPDYPYSA  178 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll---~~g~~~~~~~  178 (181)
                      |+|++.|+.+++++|+++|+++                  +.+|..|+||||+|++.|+.++|++|.   +.+++....+
T Consensus       335 h~A~~~g~~~iv~~Ll~~GAd~------------------n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~  396 (408)
T d1n11a_         335 HQAAQQGHTDIVTLLLKNGASP------------------NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD  396 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCS------------------CCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC---
T ss_pred             HHHHHcCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhccccccccc
Confidence            9999999999999999999998                  899999999999999999999988664   4566555443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-23  Score=132.72  Aligned_cols=96  Identities=24%  Similarity=0.144  Sum_probs=90.5

Q ss_pred             chhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHH
Q 041785           60 TILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ  139 (181)
Q Consensus        60 t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  139 (181)
                      ++|+.|  +..|+.++++.|++.    |++++.+|..|+||||+|+..++.+++++|++.|+++                
T Consensus         3 ~lL~~A--~~~G~~~~v~~Ll~~----g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~----------------   60 (130)
T d1ycsb1           3 ALLLDS--SLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----------------   60 (130)
T ss_dssp             HHHHHH--HHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT----------------
T ss_pred             HHHHHH--HHcCCHHHHHHHHHc----CCCcccccccccccccccccccccccccccccccccc----------------
Confidence            578999  999999999999987    8999999999999999999999999999999999887                


Q ss_pred             HhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          140 MIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       140 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                        +.+|..|+||||+|+..|+.+++++|+++|++++..++
T Consensus        61 --~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~   98 (130)
T d1ycsb1          61 --NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY   98 (130)
T ss_dssp             --TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             --ccccccCcccccccchhhHHHHHHHHHHcCCCcccccC
Confidence              88999999999999999999999999999999986553

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=1.6e-22  Score=138.52  Aligned_cols=138  Identities=18%  Similarity=0.159  Sum_probs=111.7

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH-------------------
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI-------------------   82 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~-------------------   82 (181)
                      ...|.||||+|+..|+.+++++|++.|++++.++..+.++++.+  +..............                   
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA--VAADAMGVFQILLRNRATNLNARMHDGTTPLILA   97 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence            46799999999999999999999999998888888888888887  544444322222111                   


Q ss_pred             -----------HhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchH
Q 041785           83 -----------LEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA  151 (181)
Q Consensus        83 -----------~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  151 (181)
                                 +...+.+++.++..|+|||++++..+..++++.+++.+.++                  +.+|..|.||
T Consensus        98 ~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~------------------~~~d~~g~Tp  159 (209)
T d1ot8a_          98 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR------------------DAQDDKDETP  159 (209)
T ss_dssp             HHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTCCCH
T ss_pred             ccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc------------------cccccccccc
Confidence                       23346677778888899999999999999999999988877                  7888889999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          152 LHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       152 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      ||+|+..|+.+++++|+++|++++..++
T Consensus       160 L~~A~~~g~~~~v~~Ll~~gad~n~~d~  187 (209)
T d1ot8a_         160 LFLAAREGSYEASKALLDNFANREITDH  187 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cchhccccHHHHHHHHHHCCCCCCCcCC
Confidence            9999999999999999999999887764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=4.3e-25  Score=162.79  Aligned_cols=135  Identities=14%  Similarity=0.101  Sum_probs=111.5

Q ss_pred             hcccCCCHHHHHHHHcCCcHHHHH---HHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccc--
Q 041785           20 IKQSQMDPNLFKAAADGSVEPFKD---MAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVN--   94 (181)
Q Consensus        20 ~~~~~~~t~l~~a~~~g~~~~~~~---ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--   94 (181)
                      .....|.||||+|++.|+.+.++.   |++.|++.+..+..|.||||+|  +..|+.+++++|++.    |++++..+  
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~A--a~~G~~~~v~~Ll~~----g~~~~~~~~~  158 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCEL----APTEIMAMIQ  158 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHHS----CTTTHHHHHS
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHH--HHCCCHHHHHHHHHc----CCCccccccc
Confidence            334567899999999999887765   6778998888899999999999  999999999999997    88887765  


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785           95 AKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus        95 ~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                      ..|+||||+|+..|+.+++++|++.|+..               ...+..+..+.||++.|+..|+.+++++|++.|+++
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~---------------~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTE---------------ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGG---------------HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCcc---------------cccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            46899999999999999999999998754               112444566788899999999999999999998765


Q ss_pred             C
Q 041785          175 P  175 (181)
Q Consensus       175 ~  175 (181)
                      +
T Consensus       224 ~  224 (346)
T d2ajaa1         224 A  224 (346)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.3e-22  Score=140.82  Aligned_cols=127  Identities=17%  Similarity=0.085  Sum_probs=115.2

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcH
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP  100 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (181)
                      ....+.++++.++..++.++++.|+..+......+..|.||||+|  +..++.++++.|+..   .+.+++.+|..|+||
T Consensus       101 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~~---~~~~in~~d~~g~Tp  175 (229)
T d1ixva_         101 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA--ASVGSLKLIELLCGL---GKSAVNWQDKQGWTP  175 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH--HHHTCHHHHHHHHTT---TCCCSCCCCTTSCCH
T ss_pred             cccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchh--hhccccccccccccc---ccccccccccccCCc
Confidence            344577999999999999999999999988888899999999999  999999999999886   347889999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHh-hhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCC
Q 041785          101 LHLAAKYSHFDIVRVLIER-AQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD  173 (181)
Q Consensus       101 L~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  173 (181)
                      ||+|+..++.+++++|++. |+++                  +.+|..|+||||+|+.   .+++++|+++|+|
T Consensus       176 Lh~A~~~~~~~~v~~Ll~~~gad~------------------~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         176 LFHALAEGHGDAAVLLVEKYGAEY------------------DLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHCCCS------------------CCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             hhhhcccccHHHHHHHHHhcCCCC------------------CCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            9999999999999999975 8887                  8999999999999984   5899999999997

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.3e-22  Score=137.32  Aligned_cols=138  Identities=19%  Similarity=0.189  Sum_probs=114.1

Q ss_pred             CCCHHHHHHHHcCCcHHH----HHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCc
Q 041785           24 QMDPNLFKAAADGSVEPF----KDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDT   99 (181)
Q Consensus        24 ~~~t~l~~a~~~g~~~~~----~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t   99 (181)
                      +|+||||+|+..|+.+.+    +.+...+.+++.+|..|.||||+|  +..++.+++++|++.    +++++.++..|.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A--~~~~~~~iv~~L~~~----g~d~~~~d~~g~t   74 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA--VITNQPEIAEALLGA----GCDPELRDFRGNT   74 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH--HHTTCHHHHHCCCSC----CCCSCCCCTTCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccc--ccccccccccccccc----ccccccccccccc
Confidence            589999999999986544    455567778888999999999999  999999999999886    8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcC
Q 041785          100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSAN  179 (181)
Q Consensus       100 ~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  179 (181)
                      ||++++..++.++++.+++.+........            .......|.||+|.|+..++.+++++|+..|+.++..++
T Consensus        75 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~  142 (221)
T d1iknd_          75 PLHLACEQGCLASVGVLTQSCTTPHLHSI------------LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP  142 (221)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCG------------GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             ccccccccccccccchhhhhccccccccc------------ccccccccchhhhHHhhcCChhheeeecccCcccccccc
Confidence            99999999999999999998765411110            244556789999999999999999999999999877654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.3e-21  Score=136.40  Aligned_cols=153  Identities=16%  Similarity=0.134  Sum_probs=115.5

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHhcccccc-cCCCCchhHHHHhhhhhhhhHHHHHHHHHh-------------------
Q 041785           25 MDPNLFKAAADGSVEPFKDMAREVIESSLT-VHTKNTILHINIICQETENASTKFVEEILE-------------------   84 (181)
Q Consensus        25 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~-~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~-------------------   84 (181)
                      ++|+|+.|++.|+.++++.|++.|++++.+ +..|.||||+|  +..++.+++++|++...                   
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A--~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHH--HHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            468999999999999999999999998754 45799999999  99999999999877410                   


Q ss_pred             ----------hcc---------------------------------ccc----------cccccCCCcHHHHHHHcCCHH
Q 041785           85 ----------ICP---------------------------------ALL----------LQVNAKGDTPLHLAAKYSHFD  111 (181)
Q Consensus        85 ----------~~~---------------------------------~~~----------~~~~~~g~t~L~~a~~~~~~~  111 (181)
                                ...                                 ..+          ......|.||||+|+..++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                      000                                 000          002345899999999999999


Q ss_pred             HHHHHHHh-hhhccCCCCCCcchHHHH-------------------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHH-c
Q 041785          112 IVRVLIER-AQLAQHGDEEPESGIEAF-------------------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTR-E  170 (181)
Q Consensus       112 ~~~~L~~~-~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~  170 (181)
                      ++++|++. |+++..............                   +.+++.++..|.||||+|+..|+.+++++|++ .
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            99999976 555544433333222111                   12346788999999999999999999999998 5


Q ss_pred             CCCCCCCcC
Q 041785          171 DPDYPYSAN  179 (181)
Q Consensus       171 g~~~~~~~~  179 (181)
                      |++++..+.
T Consensus       243 g~din~~d~  251 (285)
T d1wdya_         243 HIEINDTDS  251 (285)
T ss_dssp             SCCTTCCCT
T ss_pred             CCCCcCCCC
Confidence            999987754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=8.8e-21  Score=129.68  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=112.1

Q ss_pred             ccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHH
Q 041785           22 QSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPL  101 (181)
Q Consensus        22 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (181)
                      ...+.++.+.+.........+.|...+.+.+..+..|.|||+++  +..+...++..++..    +.+++..|..|.|||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~--~~~~~~~~~~~l~~~----~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          87 MHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWA--AAVNNTEAVNILLMH----HANRDAQDDKDETPL  160 (209)
T ss_dssp             CTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHH
T ss_pred             cccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhh--cccCcceeeeeeccc----ccccccccccccccc
Confidence            34567788888888888999999998888888899999999999  999999999999886    888999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHH
Q 041785          102 HLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL  167 (181)
Q Consensus       102 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  167 (181)
                      |+|+..|+.+++++|++.|+++                  +.+|..|+||||+|++.|+.++|++|
T Consensus       161 ~~A~~~g~~~~v~~Ll~~gad~------------------n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDNFANR------------------EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             chhccccHHHHHHHHHHCCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999988                  88999999999999999999999987

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.1e-20  Score=123.57  Aligned_cols=96  Identities=18%  Similarity=0.172  Sum_probs=88.9

Q ss_pred             ccCCCHHHHHHHHc---CCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCC
Q 041785           22 QSQMDPNLFKAAAD---GSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGD   98 (181)
Q Consensus        22 ~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (181)
                      ...|.||||+|+..   |..+++++|++.|++++.++..|.||||+|  +..++.+++++|++.    |++++.+|..|.
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A--~~~~~~~~v~~Ll~~----gad~~~~d~~g~  115 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC--CLTDNAECLKLLLRG----KASIEIANESGE  115 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc--ccccccccccccccc----CccccccCCCCC
Confidence            45689999999975   678999999999999999999999999999  999999999999987    999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhhhhc
Q 041785           99 TPLHLAAKYSHFDIVRVLIERAQLA  123 (181)
Q Consensus        99 t~L~~a~~~~~~~~~~~L~~~~~~~  123 (181)
                      ||||+|+..++.+++++|++.+...
T Consensus       116 tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         116 TPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999987654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.82  E-value=9.7e-21  Score=135.62  Aligned_cols=127  Identities=19%  Similarity=0.122  Sum_probs=91.0

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH------------------
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI------------------   82 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~------------------   82 (181)
                      ....|.||||+|+..|+.+++++|++.+.+....+..+.+||+.+  +..++.++++.++..                  
T Consensus        69 ~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a  146 (291)
T d1s70b_          69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA--ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA  146 (291)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             cCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccc--ccccccchhhcccccCcccccccccCccccccc
Confidence            355688899999999999998888887666554444455555555  444444444333321                  


Q ss_pred             -----------------------------------------------------------------------Hhhcccccc
Q 041785           83 -----------------------------------------------------------------------LEICPALLL   91 (181)
Q Consensus        83 -----------------------------------------------------------------------~~~~~~~~~   91 (181)
                                                                                             +...+++++
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din  226 (291)
T d1s70b_         147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN  226 (291)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             cccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceeccc
Confidence                                                                                   111366777


Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcC
Q 041785           92 QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRED  171 (181)
Q Consensus        92 ~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g  171 (181)
                      .++..|+||||+|+..|+.+++++|+++|+++                  +.+|..|+||||+|++    +++++|.+..
T Consensus       227 ~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv------------------~~~d~~G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDM------------------EAVNKVGQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------------CCcCCCCCCHHHHHHH----HHHHHHHHHh
Confidence            78888888999888888888888888888887                  8999999999999975    4777776543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-20  Score=119.46  Aligned_cols=98  Identities=12%  Similarity=0.144  Sum_probs=89.1

Q ss_pred             CCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH
Q 041785           58 KNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF  137 (181)
Q Consensus        58 g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  137 (181)
                      +.++||+|  +..|+.+++++|++.    |++++.++..|.||||+|+ .|+.+++++|++.|+++              
T Consensus         3 ~~~~L~~A--a~~G~~~~v~~Ll~~----gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~--------------   61 (125)
T d1bi7b_           3 SADWLATA--AARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP--------------   61 (125)
T ss_dssp             STTHHHHH--HHHTCHHHHHHHHTT----TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC--------------
T ss_pred             ChhHHHHH--HHCCCHHHHHHHHHc----CCccccccccccccccccc-ccccccccccccccccc--------------
Confidence            56899999  999999999999986    8999999999999999775 69999999999999988              


Q ss_pred             HHHhhcccCCCc-hHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          138 RQMIRMVNNEKN-TALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       138 ~~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                          +.++..+. ||||+|++.|+.+++++|+++|++++.+++.
T Consensus        62 ----~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~  101 (125)
T d1bi7b_          62 ----NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW  101 (125)
T ss_dssp             ----CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT
T ss_pred             ----ccccccccccccccccccccccccccccccccccccccCC
Confidence                77777765 6999999999999999999999999988653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.8e-20  Score=127.35  Aligned_cols=125  Identities=15%  Similarity=0.137  Sum_probs=100.5

Q ss_pred             cccCCCHHHHHHHHcCCcHHHHHHHHHhcccccccCCCCchhHHHHhhhhhhhhHHHHHHHH------------------
Q 041785           21 KQSQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI------------------   82 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~------------------   82 (181)
                      ....|.||||+|+..|+.++++.|++.|++.+.....|.++++.|  ....+.++++.+...                  
T Consensus        36 ~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (228)
T d1k1aa_          36 YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA--CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA  113 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH
T ss_pred             cCCCCCccceehhcccccccccccccccccccccccccccccccc--cccccccchhhhhhccccccccccccccccccc
Confidence            345789999999999999999999998888776666777777776  555555554444332                  


Q ss_pred             -------------------------------------------------HhhccccccccccCCCcHHHHHHHcCCHHHH
Q 041785           83 -------------------------------------------------LEICPALLLQVNAKGDTPLHLAAKYSHFDIV  113 (181)
Q Consensus        83 -------------------------------------------------~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  113 (181)
                                                                       +...+...+.++..|.||||+|+..|+.+++
T Consensus       114 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v  193 (228)
T d1k1aa_         114 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV  193 (228)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred             cccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHH
Confidence                                                             0112455666788899999999999999999


Q ss_pred             HHHHHhhhhccCCCCCCcchHHHHHHHhhcccCCCchHHHHHHHcCCHHHHH
Q 041785          114 RVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVK  165 (181)
Q Consensus       114 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  165 (181)
                      ++|++.|+++                  +.+|..|+||||+|++.|+.++++
T Consensus       194 ~~Ll~~Gad~------------------n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         194 RTLVRSGADS------------------SLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCT------------------TCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHCCCCC------------------CCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999988                  899999999999999999988875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=5.9e-19  Score=114.94  Aligned_cols=115  Identities=23%  Similarity=0.270  Sum_probs=93.9

Q ss_pred             CchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH-
Q 041785           59 NTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF-  137 (181)
Q Consensus        59 ~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~-  137 (181)
                      .||||.|  ++.|+.++++.|++.    |++++ .+..|+||||+|+..++.++++.++.................... 
T Consensus         3 ~t~L~~A--a~~g~~~~v~~LL~~----ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           3 GKKLLEA--ARAGQDDEVRILMAN----GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHH--HHHTCHHHHHHHHHH----TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHH--HHCCCHHHHHHHHHc----CCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            4899999  999999999999997    77776 688999999999999999999999887665533333333222221 


Q ss_pred             --------------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCcCC
Q 041785          138 --------------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPDYPYSANN  180 (181)
Q Consensus       138 --------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (181)
                                    +.+.+.++..|+||||+|+..|+.+++++|+++|++++.++++
T Consensus        76 ~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~  132 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF  132 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCC
Confidence                          2345678899999999999999999999999999999987653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.74  E-value=1.3e-19  Score=133.25  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=84.8

Q ss_pred             cccCCCCchhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcc
Q 041785           53 LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPES  132 (181)
Q Consensus        53 ~~~~~g~t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~  132 (181)
                      .++..|.||||+|  +..|+.++++++... ...+++++.++..|+||||+|+..|+.+++++|++.|+++         
T Consensus        85 ~~~~~~~t~L~~A--a~~g~~~~~~~~~~L-~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~---------  152 (346)
T d2ajaa1          85 KKGIKSEVICFVA--AITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE---------  152 (346)
T ss_dssp             HHTCCHHHHHHHH--HHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT---------
T ss_pred             hccCCCCcHHHHH--HHhCCHHHHHHHHHH-HhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc---------
Confidence            4567899999999  999998887764221 1148999999999999999999999999999999999887         


Q ss_pred             hHHHHHHHhhccc--CCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 041785          133 GIEAFRQMIRMVN--NEKNTALHEAVSHGNVEVVKILTREDPDY  174 (181)
Q Consensus       133 ~~~~~~~~~~~~~--~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  174 (181)
                               +..+  ..|+||||+|+..|+.+++++|++.|++.
T Consensus       153 ---------~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         153 ---------IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             ---------HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             ---------cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcc
Confidence                     5554  46999999999999999999999999764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-17  Score=108.97  Aligned_cols=113  Identities=19%  Similarity=0.180  Sum_probs=93.6

Q ss_pred             chhHHHHhhhhhhhhHHHHHHHHHhhccccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcchHHHH--
Q 041785           60 TILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF--  137 (181)
Q Consensus        60 t~Lh~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~--  137 (181)
                      ++||+|  +..|+.+++++|++.    |++++.+|..|.||||+|+ .++.+++++|++.++++..............  
T Consensus         3 ~~Lh~A--a~~g~~~~v~~Ll~~----g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASA--AARGDLEQLTSLLQN----NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHHH--HHHTCHHHHHHHTTS----CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHH--HHcCCHHHHHHHHHC----CCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccc
Confidence            789999  999999999999996    9999999999999999886 7899999999999988765555444332221  


Q ss_pred             -------------HHHhhcccCCCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCcC
Q 041785          138 -------------RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDP-DYPYSAN  179 (181)
Q Consensus       138 -------------~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~  179 (181)
                                   +..++..+..|.+|+++|+..++.+++++|+++|+ +.+.+++
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~  131 (156)
T d1ihba_          76 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH  131 (156)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence                         12366788999999999999999999999999887 5666554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=3.8e-17  Score=117.71  Aligned_cols=116  Identities=19%  Similarity=0.172  Sum_probs=82.7

Q ss_pred             cccCCCHHHHHHHHcCC---cHHHHHHHHH-hcccccccCCCCchhHHHHhhhhhh----hhHHHHH----HHHHhhc--
Q 041785           21 KQSQMDPNLFKAAADGS---VEPFKDMARE-VIESSLTVHTKNTILHINIICQETE----NASTKFV----EEILEIC--   86 (181)
Q Consensus        21 ~~~~~~t~l~~a~~~g~---~~~~~~ll~~-~~~~~~~~~~g~t~Lh~a~~~~~~~----~~~~~~l----~~~~~~~--   86 (181)
                      ....|.||||.|+..++   ...+..+++. .......+..|.||||++  +..+.    ...++..    +..+...  
T Consensus       136 ~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  213 (301)
T d1sw6a_         136 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI--IITSGMTGCSAAAKYYLDILMGWIVKKQN  213 (301)
T ss_dssp             CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHH--HHHHTSTTCHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHH--HHHhCccccHHHHHHHHHHHHHHHHhcCC
Confidence            34569999999998774   3334444442 233345788999999988  54332    2222221    1111000  


Q ss_pred             -----------------------------------cccccccccCCCcHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCc
Q 041785           87 -----------------------------------PALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPE  131 (181)
Q Consensus        87 -----------------------------------~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~  131 (181)
                                                         +..++.+|..|+||||+|++.|+.+++++|++.|+++        
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~--------  285 (301)
T d1sw6a_         214 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP--------  285 (301)
T ss_dssp             CCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT--------
T ss_pred             cchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--------
Confidence                                               1126788999999999999999999999999999998        


Q ss_pred             chHHHHHHHhhcccCCCchHHHHHH
Q 041785          132 SGIEAFRQMIRMVNNEKNTALHEAV  156 (181)
Q Consensus       132 ~~~~~~~~~~~~~~~~g~t~l~~A~  156 (181)
                                +.+|..|.|||++|+
T Consensus       286 ----------~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         286 ----------FIANKSGLRPVDFGA  300 (301)
T ss_dssp             ----------TCCCTTSCCGGGGTC
T ss_pred             ----------CCCCCCCCCHHHHcC
Confidence                      999999999999985