Citrus Sinensis ID: 041922

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
Protein Sequence
MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQRGKV
Secondary Structure (PSIPRED)
cccHHHHHHHHcccHHHHHHHHHHcccccHHcccccccHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccHHHHHHHHHHccHHHHHHcccccccHHHHHHHcccHHHHHHHHHHccccccHHHHEcccccccHHHHHHHcccHHHHHHHHHHcccHHccccccccccHHHHccHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccHHHHHHHHHHHcHHHHHccccccccHEHHHHHccHHHHHHHHHHcccccccHHHEEEEEccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHEEEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADeglancswssgnledkehhrekrgtymglssnddhgkssrdsrpdkdgdtfsvpetppvlendqifQSRNICLESAVAvhnkdgnardETATAAVQELKFMkkkdqqsgrkatPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDrkmlgesdlnifehvdikgnSALHLAAKFgeygpwripgaALQMQWEIKWYKFvkesmpryfflgynnkgktpkeIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALttsatvpgglneqsgkpilenepafkIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMrsavyplyaatcfPMIFFVLAHVPLYLDLIWAIFKkvpqrgkv
Flexible Loop (DISEMBL)
MEVNCLskfamrgqWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGtymglssnddhgkssrdsrpdkdgdTFSVPETPPVLENDQIFQSRNICLESAVAvhnkdgnarDETATAAVQELKfmkkkdqqsgrkaTPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKkvpqrgkv
Low Complexity Region (SEG)
MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSEsclvvaaliasvalttsatvPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQRGKV
Disordered region (IsUnstruct)
****CLSKFAMRGQWDNFVQAY****************TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAAD*GLANC**********************************************************IFQSRNICLESAVAV*********************************TPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSATVPGGL******PILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKK*******
Disordered Region (DISOPRED)
MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKE*****QEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQRG**
Disordered Region (DISEMBL)
MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGL*********************FSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKF**********KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQRGKV
Disordered Region (DISPRO)
MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQRGKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	523	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.456	0.405	0.238	2e-06
H2KZB2	603	Ankyrin repeat and LEM do	yes	no	0.269	0.233	0.254	8e-05

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 120/289 (41%), Gaps = 50/289 (17%)

Query: 223 IAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLN 282
           +AA+ G  E+++ +L   P     +D + +  + +AV+ + + + KLLLD      +D  
Sbjct: 238 LAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLD------ADPA 291

Query: 283 IFEHVDIKGNSALHLAAK---------------FGEYGPWRIPGAALQMQWEIKWYK--- 324
           I    D   N+ALH+A +                      R    AL +   +   +   
Sbjct: 292 IVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESS 351

Query: 325 FVKESMPRYFFLGYNNKGK-------TPKEIFTKTH-----------------KELVKDG 360
           ++KE + R   L  N   +       T  +I    H                 KEL K  
Sbjct: 352 YIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLH 411

Query: 361 QEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALC 420
           +E ++  + S  VVA L A+VA     TVPGG N   G  ++    +FKIF I + +AL 
Sbjct: 412 REGINNATNSVTVVAVLFATVAFAAIFTVPGGDN-NDGSAVVVGRASFKIFFIFNALALF 470

Query: 421 FSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFC 469
            S+  +    +++    + +   + +  KL+  L S+ TS+A +  S+ 
Sbjct: 471 TSLAVVVVQITLVRGETKAEKRVVEVINKLMW-LASMCTSVAFLASSYI 518

Arabidopsis thaliana (taxid: 3702)

>sp|H2KZB2|ANKL2_CAEEL Ankyrin repeat and LEM domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=lem-4l PE=1 SV=1

 Score = 49.3 bits (116), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 44/185 (23%)

Query: 1   MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGD-----------TALHIAAAAGQ 49
           +++N   K+  +G  +NF++  ++NP      +   GD            ALHIAA AGQ
Sbjct: 118 IQMNEFKKYVEKGDMENFLRLVDSNP---RFLVNTGGDVASIVMEGFRYNALHIAAKAGQ 174

Query: 50  TNIVSELVEIM----------GENASNV-LKIQN---------DRG--DTALHLAAALGN 87
           T I+++++E++          G  A +V L+  N         D+G  DT LH A+  G 
Sbjct: 175 TEIIAKILELIQNIDFLIRLYGTGADDVTLRKINILDSYLNTPDKGNSDTPLHFASKFGK 234

Query: 88  EAMCHCM---ASKDRELISAADEGLANCSWSSGNLEDKEH-----HREKRGTYMGLSSND 139
             +   +   ++ DR L++ + +   +C+      EDK+      H    G Y+ L  N 
Sbjct: 235 IGVVRVLTENSATDRTLLNKSGKSALDCAGERYTGEDKDMVQRDIHLAIEGFYVFLHRNP 294

Query: 140 DHGKS 144
             G +
Sbjct: 295 TTGST 299

Involved in mitotic nuclear envelope reassembly by promoting dephosphorylation of baf-1 during mitotic exit. Coordinates the control of baf-1 dephosphorylation by inhibiting VRK1 kinase and promoting dephosphorylation of baf-1 by protein phosphatase 2A (PP2A), thereby facilitating nuclear envelope assembly. It is unclear whether it acts as a real PP2A regulatory subunit or whether it is involved in recruitment of the PP2A complex.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
296085250	635	unnamed protein product [Vitis vinifera]	0.875	0.721	0.449	1e-120
255554112	786	ankyrin repeat-containing protein, putat	0.726	0.483	0.550	1e-117
224066419	360	predicted protein [Populus trichocarpa]	0.594	0.863	0.629	1e-116
359495447	733	PREDICTED: uncharacterized protein LOC10	0.592	0.422	0.623	1e-113
359495445	835	PREDICTED: uncharacterized protein LOC10	0.634	0.397	0.584	1e-112
359479721	749	PREDICTED: uncharacterized protein LOC10	0.592	0.413	0.623	1e-112
356546544	725	PREDICTED: uncharacterized protein LOC10	0.726	0.524	0.530	1e-108
147855983	1513	hypothetical protein VITISV_044165 [Viti	0.722	0.249	0.515	1e-108
359476634	969	PREDICTED: uncharacterized protein LOC10	0.594	0.320	0.583	1e-107
359479729	826	PREDICTED: uncharacterized protein LOC10	0.586	0.371	0.577	1e-106

>gi|296085250|emb|CBI28745.3| unnamed protein product [Vitis vinifera]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/523 (44%), Positives = 325/523 (62%), Gaps = 65/523 (12%)

Query: 6   LSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENAS 65
           L  +AM+G+W+  V   + +P + + K T SGDTALHIA + G+ ++V +LV++M     
Sbjct: 166 LISYAMQGKWEKVVDICKEDPWAHDEKTTTSGDTALHIAVSDGREDVVVKLVQLMAHRNV 225

Query: 66  NVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHH 125
            ++ I+NDRG+T LHLAA++GN  MC C+A++  EL+                       
Sbjct: 226 YLINIKNDRGNTPLHLAASVGNVRMCKCIAAEYPELV----------------------- 262

Query: 126 REKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLE-----NDQIFQSRNICLE 180
                   G+ +N++                    ETP  L       D      NIC  
Sbjct: 263 --------GVRNNEN--------------------ETPLFLAALHGMKDAFLCLSNICSS 294

Query: 181 SA---VAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKIL 237
           +A   V  + +  +  +    A   E  F  K+    G++ +P+LIAA+ G+ EMVEKIL
Sbjct: 295 TANNKVYEYLRRSDGENSLHCAITGEY-FALKRTWGMGKRKSPVLIAAENGIIEMVEKIL 353

Query: 238 DTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHL 297
              P AI  +DS++KN+VLLAV+NRQ  +Y+LLL+RK L ES    F  VD +GNSALHL
Sbjct: 354 KLFPAAIRHVDSDQKNIVLLAVKNRQISVYELLLNRKPLEESA---FRMVDSEGNSALHL 410

Query: 298 AAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELV 357
           AA  G+Y P+  P AALQMQWEIKWYK+VK S+PR+FF+ YNNK + PKEIFT++HKELV
Sbjct: 411 AATLGDYRPY--PFAALQMQWEIKWYKYVKNSVPRHFFIRYNNKNQVPKEIFTESHKELV 468

Query: 358 KDGQEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFV 417
           ++G +WL+ TS SC VVA L+ +VA  T+AT+PGG  E S +P LE+ P F ++AISS +
Sbjct: 469 REGGKWLNNTSNSCSVVATLVTTVAFATTATIPGGFKENSSEPTLEHHPGFLVYAISSLI 528

Query: 418 ALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLR 477
           AL FS+T++  F +ILTS Y+ KD    LPRKLLLGLTSLF SI A+++ FC+GHF +L+
Sbjct: 529 ALSFSVTSVVTFLAILTSRYQVKDFGRGLPRKLLLGLTSLFISIGAMLVCFCAGHFFLLK 588

Query: 478 DEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQR 520
           + ++   +P+YA  C P+ FF +A  P Y DLIWAIFKKVPQR
Sbjct: 589 NVLKQTAFPVYAVACLPVTFFAVAQFPFYFDLIWAIFKKVPQR 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554112|ref|XP_002518096.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223542692|gb|EEF44229.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/409 (55%), Positives = 290/409 (70%), Gaps = 29/409 (7%)

Query: 139 DDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRN----ICLESAVAVHNKDG---- 190
           ++ G++ R+S P +DGD       P + E D++ QS+      C  +   +  ++     
Sbjct: 375 ENDGRNPRNSWPKRDGDPSEFLAAPHISEVDKLTQSKEHIGLSCPTTNQEIRRENHGRAA 434

Query: 191 --------NARDETATAAVQELK----------FMKKKDQQSGRKATPILIAAKMGVTEM 232
                   N   +    AVQEL           F KK+ Q+  +K TPIL+AAK+G+TE+
Sbjct: 435 KLGVAEVVNESLDAYPTAVQELNTSQKNLVLLAFEKKETQKFRKKETPILVAAKVGITEI 494

Query: 233 VEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN 292
           V+KILDT P+AI DLDS++KN VLLAVE+RQT +Y LLL R M+ ES   +F  +D  GN
Sbjct: 495 VDKILDTYPLAIQDLDSDEKNAVLLAVEHRQTDVYNLLLKRAMVKES---VFRQLDKHGN 551

Query: 293 SALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKT 352
           SALHLAAK G+Y P  +PGAALQMQWEIKWYKFVK SMP +FF+ +N++G+TPKEIF  T
Sbjct: 552 SALHLAAKLGDYRPKLVPGAALQMQWEIKWYKFVKNSMPPHFFVKHNSQGQTPKEIFIVT 611

Query: 353 HKELVKDGQEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFA 412
           HKELV  G EWL++TSESC VVAAL+A+VA  TSAT+PGG+N ++G PILENEPAF++FA
Sbjct: 612 HKELVAKGSEWLTKTSESCSVVAALVATVAFATSATIPGGVNPENGAPILENEPAFEVFA 671

Query: 413 ISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGH 472
           I+S VALCFS+TA+ FF +ILTS Y+E D AM LPRKL LGLTSLFTSIA+I++SFC+GH
Sbjct: 672 IASLVALCFSVTAVIFFLTILTSRYQENDFAMDLPRKLFLGLTSLFTSIASILLSFCAGH 731

Query: 473 FSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQRG 521
           F VL++ +R+A YPLYAATC P+ FF L+ +PLY DL  AI    PQR 
Sbjct: 732 FFVLKESLRTAAYPLYAATCLPISFFALSQLPLYFDLGRAILLDEPQRS 780

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066419|ref|XP_002302098.1| predicted protein [Populus trichocarpa] gi|222843824|gb|EEE81371.1| predicted protein [Populus trichocarpa]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/316 (62%), Positives = 250/316 (79%), Gaps = 5/316 (1%)

Query: 208 KKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIY 267
           K K      + TPILIAAK G+ EMVEKI++  PVAI+D+++EKKN+VLL+VENRQ  +Y
Sbjct: 43  KPKAPAMEMRETPILIAAKNGIVEMVEKIIEKFPVAINDVNAEKKNIVLLSVENRQPHVY 102

Query: 268 KLLLD--RKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKF 325
           + LL   R ++ ES   IF  VD KGNSALHLAA  G++ PW IPGAALQMQWEIKW++F
Sbjct: 103 QFLLSLKRNIVKES---IFRQVDSKGNSALHLAATLGDFKPWSIPGAALQMQWEIKWFEF 159

Query: 326 VKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTT 385
           VK+SMP  FF+ YN +GKTP++IFT+THK+LVK G EWL+ TSESC VVAALIA+VA  T
Sbjct: 160 VKDSMPPNFFVRYNKEGKTPRDIFTETHKDLVKSGGEWLTNTSESCSVVAALIATVAFAT 219

Query: 386 SATVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMA 445
           S+TVPGG+NE +G PILE +PAFK+FAISS +ALCFS+T++  F +ILTS Y+E+D    
Sbjct: 220 SSTVPGGVNEITGSPILEYQPAFKMFAISSLIALCFSVTSVVMFLAILTSRYQERDFGQD 279

Query: 446 LPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPL 505
           LPRKLL+GLTSLF SIA++++SFC+GHF VLRDE++ A +P+YA TC P+ FF +A  PL
Sbjct: 280 LPRKLLVGLTSLFISIASVLVSFCTGHFFVLRDELKYAAFPVYAVTCLPVTFFAVAQFPL 339

Query: 506 YLDLIWAIFKKVPQRG 521
           Y DL WA FKKVPQR 
Sbjct: 340 YFDLTWATFKKVPQRS 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495447|ref|XP_002274376.2| PREDICTED: uncharacterized protein LOC100254555 [Vitis vinifera]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/313 (62%), Positives = 245/313 (78%), Gaps = 3/313 (0%)

Query: 209 KKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYK 268
           KK ++  +K TPIL+AAK G+ EMV +ILD  PVAI D++SE KN+VLLAVENRQ  +Y+
Sbjct: 419 KKTEKVDKKETPILLAAKNGIAEMVREILDRFPVAIQDMNSEHKNMVLLAVENRQPHVYE 478

Query: 269 LLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKE 328
           LLL+RK+  ++   +F  VD  GNSALHLAA   +  PW IPGAALQMQWEIKW+ +VK 
Sbjct: 479 LLLNRKIQKDT---VFRIVDKDGNSALHLAAMLRDNLPWHIPGAALQMQWEIKWFDYVKN 535

Query: 329 SMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSAT 388
           SMP +FF  YN   +TPKE+F ++HKELV+ G +WL  TS+SC VV+ALIA+VA  TSAT
Sbjct: 536 SMPIHFFPHYNANNQTPKEVFNESHKELVEKGGKWLKATSDSCSVVSALIATVAFATSAT 595

Query: 389 VPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPR 448
           VPGG+ E SGKPILE +PAF+IFAISS VALCFS+T++  F +ILTS Y+ KD    LPR
Sbjct: 596 VPGGIKEDSGKPILERQPAFRIFAISSLVALCFSVTSVVMFLAILTSRYQVKDFRRDLPR 655

Query: 449 KLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLD 508
           KLLLGL+SLF SIAAI++SFC+GHF VL+DE++ A +P+YA TC P+ FF +A  PLYLD
Sbjct: 656 KLLLGLSSLFVSIAAILVSFCAGHFFVLKDELKYAAFPVYAVTCLPVTFFAIAQFPLYLD 715

Query: 509 LIWAIFKKVPQRG 521
           L+WA FKKVP+RG
Sbjct: 716 LVWATFKKVPKRG 728

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495445|ref|XP_002274340.2| PREDICTED: uncharacterized protein LOC100259671 [Vitis vinifera]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/342 (58%), Positives = 253/342 (73%), Gaps = 10/342 (2%)

Query: 189 DGNARDETATAAVQELKFMKKKDQQSGR-------KATPILIAAKMGVTEMVEKILDTIP 241
           + N      T++  E +  KKK+ +  +       K TPILIAAK G+ EMV +IL+  P
Sbjct: 494 EANDTKRMKTSSENEKRQQKKKNDEKAKETDEMAKKETPILIAAKNGIVEMVVRILELFP 553

Query: 242 VAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKF 301
           VAIHD++SEKKN+VLLAVENRQT +Y LLL R++L +S   IF  VD +GNSALHLAAK 
Sbjct: 554 VAIHDMNSEKKNIVLLAVENRQTHVYALLLKREILKDS---IFHVVDHEGNSALHLAAKL 610

Query: 302 GEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQ 361
            +  PWRIPGAALQMQWEIKWY+FVK SMP +FF+ YNN  KT +E+FT++H +LV  G 
Sbjct: 611 NDRHPWRIPGAALQMQWEIKWYEFVKNSMPIHFFVRYNNNNKTAREVFTESHADLVDKGG 670

Query: 362 EWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALCF 421
           +WL+ TS SC VVAALIA+VA  TSATVPGG+ E  G P LEN+PAF +F+ISS +ALCF
Sbjct: 671 KWLNDTSNSCSVVAALIATVAFATSATVPGGVKEGIGVPTLENQPAFNVFSISSLIALCF 730

Query: 422 SMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMR 481
           S+T++  F +ILTS ++EKD    LP+KLL GL+SLF SIAAI++SFC+GHF VL+DE++
Sbjct: 731 SVTSVVMFLAILTSRHQEKDFGSDLPKKLLFGLSSLFISIAAILVSFCAGHFFVLKDELK 790

Query: 482 SAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQRGKV 523
              +P+YA TC P+ FF +   PLYLDLI A FKKVPQR  V
Sbjct: 791 YFAFPIYAVTCLPVTFFAVMQFPLYLDLICATFKKVPQRSYV 832

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479721|ref|XP_002272096.2| PREDICTED: uncharacterized protein LOC100255529 [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/313 (62%), Positives = 245/313 (78%), Gaps = 3/313 (0%)

Query: 208 KKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIY 267
           KKK  +  RK TP+L+AAK GV E+VE+IL+  PVAIHD D +KKN+VLLAVE RQ  +Y
Sbjct: 433 KKKPSEMERKETPLLVAAKNGVVEIVERILELFPVAIHDKDYQKKNIVLLAVEYRQPHVY 492

Query: 268 KLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVK 327
           +LL+ RK+L ++   +F HVDI GNSALHLAA  GE  PW IPGAALQMQWEIKWY+FVK
Sbjct: 493 ELLVKRKVLKDA---VFRHVDIDGNSALHLAAMLGENKPWLIPGAALQMQWEIKWYEFVK 549

Query: 328 ESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSA 387
            S+P++FF+  N KG+T K+IFT+ H +LV+ G EWL +TSESC VVAALIA+VA  TS+
Sbjct: 550 RSVPQHFFVRCNQKGETAKDIFTEKHMDLVQAGGEWLFKTSESCSVVAALIATVAFATSS 609

Query: 388 TVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALP 447
           TVPGG+ E+ G P LE+EPAF IFAISS VALCFS+ A+  F +ILTS Y+E+D  + LP
Sbjct: 610 TVPGGVKEKVGTPTLEDEPAFDIFAISSLVALCFSVNAVIMFLAILTSRYQERDFRIYLP 669

Query: 448 RKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYL 507
           RKLL+GLTSLF SIA+++ISFC+GH+ VL D+++     +YA TC P+IFF +A  PLY 
Sbjct: 670 RKLLVGLTSLFVSIASMLISFCAGHYFVLMDKLQYTAILVYAVTCLPVIFFAVAQFPLYF 729

Query: 508 DLIWAIFKKVPQR 520
           DL+WA FKKVPQR
Sbjct: 730 DLMWATFKKVPQR 742

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546544|ref|XP_003541685.1| PREDICTED: uncharacterized protein LOC100798360 [Glycine max]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/396 (53%), Positives = 270/396 (68%), Gaps = 16/396 (4%)

Query: 139 DDHGKSSRDSRPDKD--GDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDET 196
           DD G     +  DKD   D +S      V   D   + +++ ++     H K G  +DE 
Sbjct: 327 DDDGNKPLQNLGDKDQQTDPYSFDGGGSVTLADITEEQQHLTIKGEPK-HQKIGGKKDEN 385

Query: 197 ATAAVQEL---KFMKKKDQQSGRKAT--------PILIAAKMGVTEMVEKILDTIPVAIH 245
              +   L       KKD+++ + +T        PILIAAK GVTEMV KI+D+ PVA+H
Sbjct: 386 PLGSSLNLYCCHCTSKKDEKNEKISTKEKKVLETPILIAAKNGVTEMVAKIMDSFPVAVH 445

Query: 246 DLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYG 305
           D+D++KKN+VLLAVENRQT +Y  LL +K L ES  NIFE VD +GNSALHLAAK G+Y 
Sbjct: 446 DMDAKKKNIVLLAVENRQTYLYNFLLSKKNLKES--NIFEKVDNEGNSALHLAAKLGDYK 503

Query: 306 PWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLS 365
           PW IPG ALQM WEIKWY FVK SM  +FF  YNN+ KTP++IF++THK+LV+ G EWL 
Sbjct: 504 PWLIPGEALQMHWEIKWYLFVKGSMQPHFFSHYNNENKTPRDIFSETHKDLVRSGGEWLK 563

Query: 366 RTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTA 425
           +T+ESC +VAALIA+VA +TS  VPG   + +G P LE  P FK FAI+S +ALC S+T+
Sbjct: 564 KTAESCSLVAALIAAVAFSTSTNVPGDFKDDTGSPTLEERPEFKAFAIASLIALCCSVTS 623

Query: 426 LSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVY 485
           L  F SILTS Y+E+D    LPRKL+LGLTSLF SI ++M+ FC+GHF VL+D+++S  +
Sbjct: 624 LVLFLSILTSRYQERDFGKNLPRKLILGLTSLFMSITSMMVCFCAGHFFVLKDKLKSVAF 683

Query: 486 PLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQRG 521
           P+YA TC P+  F LA  PLY+DL WA FKKVPQRG
Sbjct: 684 PVYAVTCLPVTLFALAQFPLYIDLTWATFKKVPQRG 719

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855983|emb|CAN82817.1| hypothetical protein VITISV_044165 [Vitis vinifera]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/400 (51%), Positives = 271/400 (67%), Gaps = 22/400 (5%)

Query: 139 DDHGKSSRDSRPDKDGDT--FSVPETPPVLENDQIFQSRNICLESAV---AVHNKDGNAR 193
           +D+G++ +     KD DT  +S+ +   V   D   +S+++   +A    +  N+ G  +
Sbjct: 423 EDNGRNPQQPSQKKDADTTPYSISDDHGV-SFDNTLESQHLXXGTAAQPSSAXNQQGEDK 481

Query: 194 DETATAAVQELKFM-------------KKKDQQSGRKATPILIAAKMGVTEMVEKILDTI 240
              A  +  E +               KKK  +  RK T +L+AAK GV E+VE+IL+  
Sbjct: 482 GAPADQSSPEAQRKQNDNGKNKKNEQDKKKPSEMERKETXLLVAAKNGVVEIVERILELF 541

Query: 241 PVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAK 300
           PVAIHD D +KKN+VLLAVE RQ  +Y+LL+ RK+L ++   +F HVDI GNSALHLAA 
Sbjct: 542 PVAIHDKDYQKKNIVLLAVEYRQPHVYELLVKRKVLKDA---VFRHVDIDGNSALHLAAM 598

Query: 301 FGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDG 360
            GE  PW IPGAALQMQWEIKWY+FVK S+P++FF+  N KG+T K+IFT+ H +LV+ G
Sbjct: 599 LGENKPWLIPGAALQMQWEIKWYEFVKRSVPQHFFVRCNXKGETAKDIFTEXHMDLVQAG 658

Query: 361 QEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALC 420
            EWL +TSESC VV ALIA+VA  TS T PGG+ E  G P LE+EPAF IFAISS VALC
Sbjct: 659 GEWLFKTSESCSVVXALIATVAFATSXTXPGGVKEBVGTPTLEDEPAFDIFAISSLVALC 718

Query: 421 FSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEM 480
           FS+ A+  F +ILTS  +E+D  + LPRKLL+GLTSLF SIA+++ISFC+GH+ VL D++
Sbjct: 719 FSVNAVIMFLAILTSRXQERDFRIYLPRKLLVGLTSLFVSIASMLISFCAGHYFVLMDKL 778

Query: 481 RSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKKVPQR 520
                 +YA TC P+IFF +A  PLY DL+WA FKKVPQR
Sbjct: 779 XYTAILVYAVTCLPVIFFAVAQFPLYFDLMWATFKKVPQR 818

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476634|ref|XP_002273692.2| PREDICTED: uncharacterized protein LOC100246246 [Vitis vinifera]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/319 (58%), Positives = 237/319 (74%), Gaps = 8/319 (2%)

Query: 203 ELKFM-----KKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLL 257
           EL FM     KK+  + G   TPILIAAK G+ EMV+ IL+  PVAIHD + EKKN+VLL
Sbjct: 399 ELNFMNLATEKKRTVEFGNMETPILIAAKNGIKEMVDSILEKFPVAIHDRNKEKKNVVLL 458

Query: 258 AVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQ 317
           AVENRQ  +Y++LL + +L +S   +F  VD +GNSALHLAA  G+Y PW IPGAALQMQ
Sbjct: 459 AVENRQPEVYEILLKKNILKDS---VFGVVDNEGNSALHLAAMLGDYQPWHIPGAALQMQ 515

Query: 318 WEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAAL 377
           WEIKWYKFVK SMP +FF  YNNK +TPKEIFT  H ELV+ G +WL+ TS SC V+A L
Sbjct: 516 WEIKWYKFVKNSMPPHFFSHYNNKNQTPKEIFTDHHDELVRRGGKWLNNTSSSCSVIATL 575

Query: 378 IASVALTTSATVPGGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTY 437
           IA+VA  TSAT+PG  NE +G+P  E++ AF +FAISS VALCFS+T++  F +IL+S +
Sbjct: 576 IATVAFATSATIPGSFNEGTGRPNFEHQLAFNLFAISSLVALCFSVTSMVMFLAILSSRH 635

Query: 438 REKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIF 497
           +E D    LP+KLLLGLT+LF SI+AI++SFC+GHF +LRDE++ A +P+YA TC P+  
Sbjct: 636 QEDDFHRDLPQKLLLGLTTLFISISAILVSFCAGHFFILRDELKRAAFPVYAITCLPISI 695

Query: 498 FVLAHVPLYLDLIWAIFKK 516
           F L   PLY D++W  F+K
Sbjct: 696 FALVEFPLYFDVVWTTFRK 714

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479729|ref|XP_002274084.2| PREDICTED: uncharacterized protein LOC100245924 [Vitis vinifera]

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/310 (57%), Positives = 238/310 (76%), Gaps = 3/310 (0%)

Query: 211 DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLL 270
           ++Q  +K TPILIAAK G+TEMV +ILD  PVAIHD  S  KN+V++AVENRQ  +Y LL
Sbjct: 514 NKQKDKKETPILIAAKNGITEMVMEILDCSPVAIHDKTSANKNIVMVAVENRQPNVYNLL 573

Query: 271 LDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESM 330
           L++++L E+   +F  VD +GNSALHL A    + PW IPGAALQMQWEIKWYK+V++SM
Sbjct: 574 LEKRILIET---LFNAVDDEGNSALHLVAMATHHQPWLIPGAALQMQWEIKWYKYVEDSM 630

Query: 331 PRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSATVP 390
           P +F + YN   KT ++IFT+ H+ELVK+G  WL+ TS SC VVAALIA+VA  TSATVP
Sbjct: 631 PMHFSMRYNKANKTARQIFTEKHEELVKNGSAWLNTTSNSCSVVAALIATVAFATSATVP 690

Query: 391 GGLNEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKL 450
           GG+NE +G P LE +PAF +F+ISS +ALCFS+ +L  F +ILTS ++E+D    LP K+
Sbjct: 691 GGINEGNGTPTLERKPAFNVFSISSLIALCFSVNSLVMFLAILTSRHQERDFGRNLPNKM 750

Query: 451 LLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLI 510
           L GL+SLF SI A+++SFC+GHF +L+DE++ A +P+YA TC P+ FF +  +PLYLDL+
Sbjct: 751 LFGLSSLFISIGAMLVSFCAGHFFLLKDELKYAAFPIYAVTCLPVAFFAVMQLPLYLDLM 810

Query: 511 WAIFKKVPQR 520
           WA F+KVP+R
Sbjct: 811 WATFRKVPKR 820

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.548	0.827	0.321	2.9e-32
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.548	0.428	0.334	5.6e-32
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.533	0.486	0.299	2.9e-30
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.558	0.484	0.295	3.5e-30
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.483	0.404	0.312	1.9e-29
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.154	0.134	0.325	1.1e-10
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.114	0.097	0.387	6.6e-09
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.151	0.136	0.246	3.8e-08
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.135	0.132	0.346	4.9e-06
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.152	0.118	0.320	1.7e-05

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 98/305 (32%), Positives = 154/305 (50%)

Query:   218 ATPILI--AAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM 275
             ++P+L+  AA+ G  E++  ++ + P  I  +D + ++L  +A  NR   I+  + +   
Sbjct:    30 SSPMLLFDAAQSGNLELLLILIRSYPDLIWTVDHKNQSLFHIAAINRHEKIFNRIYE--- 86

Query:   276 LGE-SDLNIFEHVDIKGNSALHLAAKFGEYGPWRI-PGAALQMQWEIKWYKFVKESMPRY 333
             LG   DL          ++ LHL A+       ++  GAALQMQ EI WYK VKE +PR 
Sbjct:    87 LGAIKDLIAMYKEKESNDNLLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEIVPRV 146

Query:   334 FFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSEXXXXXXXXXXXXXXXXXXXXPGGL 393
             +    N K +   ++FTK H  L K+G++W+  T+                     PGG 
Sbjct:   147 YIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGG- 205

Query:   394 NEQSGK------PILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALP 447
             N+ SG       P    E  F++F IS  VAL  S+T++  F SILTS Y E      LP
Sbjct:   206 NDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLP 265

Query:   448 RKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMR--SAVYPLYAATCFPMIFFVLAHVPL 505
              KL+LGL +LF SI +++++F +    ++RD+    S +  +Y A+   + F VL H  L
Sbjct:   266 TKLMLGLLALFVSIISMVLAF-TATLILIRDQEPKWSLILLVYVASATALSFVVL-HFQL 323

Query:   506 YLDLI 510
             + D +
Sbjct:   324 WFDTL 328

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 5.6e-32, Sum P(2) = 5.6e-32
 Identities = 102/305 (33%), Positives = 152/305 (49%)

Query:   221 ILIAAKMG-VTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL---DRKML 276
             +L A + G V  +VE I +   +      S    L LLAVE RQ  ++ LL    DRK L
Sbjct:   363 LLFAVRYGNVDFLVEMIRNNSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYL 422

Query:   277 GESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIP---GAALQMQWEIKWYKFVKESMPRY 333
               +D       D  GN  LHLA  F    P ++    GA LQ+Q E++W+K V+   P  
Sbjct:   423 LLADK------DCDGNGVLHLAG-FPS-PPSKLSSVVGAPLQLQRELQWFKEVERIAPEI 474

Query:   334 FFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSEXXXXXXXXXXXXXXXXXXXXPGGL 393
                  N + +TP EIFTK H+ L ++ ++W+  T+                     PGG 
Sbjct:   475 EKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGT 534

Query:   394 NEQS-GKPILENEPAFKIFAISSFVALCF-SMTALSFFFSILTSTYREKDLAMALPRKLL 451
             ++ S GKP    +  F IF +S  ++ CF S T++  F  ILT+ Y   D  + LP K++
Sbjct:   535 DDNSKGKPFHLRDRRFIIFIVSDLIS-CFASCTSVLIFLGILTARYSFDDFLVFLPTKMI 593

Query:   452 LGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIW 511
              GL+ LF SIAA++I+F S  F+++  E +  V P     C P + FVL   PL  ++I+
Sbjct:   594 AGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIF 653

Query:   512 AIFKK 516
             + + K
Sbjct:   654 STYGK 658

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
 Identities = 89/297 (29%), Positives = 143/297 (48%)

Query:   224 AAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNI 283
             AA++G  E++  ++ +    +  +D+  + L  +A   R   I+ L+ +  + G  DL I
Sbjct:   262 AAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYE--LGGIKDL-I 318

Query:   284 FEHVDIKG-NSALHLAAKFGEYGPWRI-PGAALQMQWEIKWYKFVKESMPRYFFLGYNNK 341
               + + +  ++ LHL A+       ++  GAAL MQ E+ W+K VKE +PR +    N K
Sbjct:   319 ASYKEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTK 378

Query:   342 GKTPKEIFTKTHKELVKDGQEWLSRTSEXXXXXXXXXXXXXXXXXXXXPGGLNEQSGK-- 399
             G+   +IFT+ H+ L K+G+ W+  T+                     PGG N+ SG   
Sbjct:   379 GELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGG-NDDSGDKA 437

Query:   400 -----PILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGL 454
                  P       F IF +S  VAL  SM ++  F SI TS Y E+D    LP KL+ GL
Sbjct:   438 NTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGL 497

Query:   455 TSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIW 511
             ++LF SI +++++F    FS++   +  A   L   +C   +   L    LY  L W
Sbjct:   498 SALFISIISMILAFT---FSMILIRVEKASLSLVLISCLASLT-ALTFAYLYFHL-W 549

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.5e-30, P = 3.5e-30
 Identities = 88/298 (29%), Positives = 152/298 (51%)

Query:   221 ILIAAKMGVTEMVEKILDTIPVAIHDLD-SEKKNLVLLAVENRQTGIYKLLLDRKMLGES 279
             +L AAK G  +   +I+      +  L+ +  +NL  LAVE ++  I+ L+     L + 
Sbjct:   298 LLEAAKSGNRDFFIEIIKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHG---LDDR 354

Query:   280 DLNIFEHVDIKGNSALHLAAKFGEYGPW-RIPGAALQMQWEIKWYKFVKESMPRYFFLGY 338
              + +    D   N+ LH+A +        +I GAAL+MQ E +W+K V+  +     +  
Sbjct:   355 KVTLLRSYDKGNNNILHIAGRLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQK 414

Query:   339 NNKGKTPKEIFTKTHKELVKDGQEWLSRTSEXXXXXXXXXXXXXXXXXXXXPGGLNEQSG 398
             N   KTP++IF   H+ L K+G+EW+  T+                     PGG++  SG
Sbjct:   415 NKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSG 474

Query:   399 KPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLF 458
              P++ N+  F+ F  +  +A   S  ++  F SILTS Y   D  ++LPRK++LG + LF
Sbjct:   475 SPLILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILF 534

Query:   459 TSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFPMIFFVLAHVPLYLDLIWAIFKK 516
              SIA+++++F +   + +R +  + VYPL     FP + F++   PL  ++I + + K
Sbjct:   535 ISIASMLVAFITSLSASMRHKP-ALVYPLKPLASFPSLLFLMLQYPLLKEMISSTYGK 591

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
 Identities = 82/262 (31%), Positives = 129/262 (49%)

Query:   258 AVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAA-KFGEYGPWRIPGAALQM 316
             AV+ RQ  ++ LL     LG+         D  GNS LHLA      Y    +  A LQM
Sbjct:   359 AVQVRQEKVFSLLYG---LGDRKYLFLADKDSDGNSVLHLAGYPPPNYKLATVVSATLQM 415

Query:   317 QWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKTHKELVKDGQEWLSRTSEXXXXXXX 376
             Q E++W+K ++  +P       N +  TP EIF K H+ +  + ++W+  T+        
Sbjct:   416 QRELQWFKEMERIVPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAA 475

Query:   377 XXXXXXXXXXXXXPGGLNEQSG-KPILENEPAFKIFAISSFVALCFSM-TALSFFFSILT 434
                          PGG ++ SG +P   +E  F IF +S  ++ CF+  T++  F  ILT
Sbjct:   476 LIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLIS-CFAACTSVLIFLGILT 534

Query:   435 STYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSVLRDEMRSAVYPLYAATCFP 494
             + Y   D   +LP  ++ GL++LF SIAA++++F S  F++  D     V P     CFP
Sbjct:   535 ARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDPW--IVAPTIFFACFP 592

Query:   495 MIFFVLAHVPLYLDLIWAIFKK 516
              + FV+   PL  +LI++ + K
Sbjct:   593 ALLFVMIQYPLLKELIFSTYGK 614

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query:    19 VQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTA 78
             V+A E++ +   ++   + +T LH+AA  G   +V++++E+      ++L  +N  GDT 
Sbjct:    20 VEARESS-LEERSEEQNTNNTVLHVAAKLGHRELVAKIIELR----PSLLSSRNAYGDTP 74

Query:    79 LHLAAALGNEAMCHCMASKDRELISA 104
             LHLAA LG+  +   M     EL SA
Sbjct:    75 LHLAALLGDVNIVMQMLDTGLELYSA 100

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query:    37 GDTALHIAAAAGQTNIVSELVEIMGENASN--VLKIQNDRGDTALHLAAALGNEAMCHCM 94
             G+T LH+AA AG  NIV  LV  + E++S    +  ++  GDTALH A    +  +  C+
Sbjct:   106 GETTLHVAARAGSLNIVEILVRFITESSSYDAFIAAKSKNGDTALHAALKGKHVEVAFCL 165

Query:    95 AS 96
              S
Sbjct:   166 VS 167

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
 Identities = 20/81 (24%), Positives = 41/81 (50%)

Query:   219 TPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE 278
             +P+ +A   G   ++E+ LD +P++   +   K+ +  LA  N+    +  + +   LG 
Sbjct:   207 SPLHLAVLRGSVVILEEFLDKVPLSFSSITPSKETVFHLAARNKNMDAFVFMAES--LGI 264

Query:   279 SDLNIFEHVDIKGNSALHLAA 299
             +   + +  D  GN+ LH+AA
Sbjct:   265 NSQILLQQTDESGNTVLHIAA 285

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
 Identities = 26/75 (34%), Positives = 38/75 (50%)

Query:    37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
             G T LH+A   G   +V ++VEI     S+     N + DT LHLAA LG+ ++   M  
Sbjct:    27 GGTFLHLAVKLGNEELVKKIVEIHPSLVSST----NTKSDTPLHLAARLGHTSILLLMLE 82

Query:    97 KDRELISAADEGLAN 111
                E I + +E + N
Sbjct:    83 STAESIESLEETVPN 97

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 26/81 (32%), Positives = 44/81 (54%)

Query:   220 PILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGES 279
             PI +A K G  ++++ IL   P A+  LD E +N++ +A +N +  + K +L R    ++
Sbjct:   353 PIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFIL-RCCKDKN 411

Query:   280 DLNIFEHVDIKGNSALHLAAK 300
                +    D  GN+ LHLA K
Sbjct:   412 KEKLINEEDANGNTPLHLATK 432

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00020449 hypothetical protein (360 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	523
pfam13962	114	pfam13962, PGG, Domain of unknown function	9e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 95.7 bits (239), Expect = 9e-24
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 361 QEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQS-----GKPILENEP-AFKIFAIS 414
            EWL +T  S LVVA LIA+V      T PGG  +       G PIL  +P  FK F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 415 SFVALCFSMTALSFFFSILTSTYREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHF 473
           + +A   S+ A+     I+ S  R          +LL  LT L+ S+ ++M++F +G +
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRL-------PRLLALLTLLWLSLLSLMVAFAAGSY 112

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
             G T LH+AA  G   IV  L+    E  ++V   ++  G+T LHLAA  GN  +   
Sbjct: 37 DNDGRTPLHLAAKNGHLEIVKLLL----EKGADV-NARDKDGNTPLHLAARNGNLDVVKL 91

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
            G T LH+AA+ G   +V  L+E         +  +++ G T LHLAA  G+  +
Sbjct: 5  EDGRTPLHLAASNGHLEVVKLLLE-----NGADVNAKDNDGRTPLHLAAKNGHLEI 55

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 8/84 (9%)

Query: 219 TPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE 278
           TP+ +AA  G  E+V+ +L+     ++  D++ +  + LA +N    I KLLL++     
Sbjct: 9   TPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG---- 63

Query: 279 SDLNIFEHVDIKGNSALHLAAKFG 302
           +D+N     D  GN+ LHLAA+ G
Sbjct: 64  ADVNA---RDKDGNTPLHLAARNG 84

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASK 97
          DTALH+AA  G   IV  L+E         +  ++  G+TALHLAA  GN  +   +   
Sbjct: 29 DTALHLAARNGNLEIVKLLLE-----HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Query: 98 D 98
           
Sbjct: 84 G 84

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 32  KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
              + G+T LH+AA  G  ++V  L++         +  ++  G T LHLAA  G+  + 
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLLK-----HGADVNARDKDGRTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 219 TPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE 278
           TP+ +AAK G  E+V+ +L+     ++  D +    + LA  N    + KLLL       
Sbjct: 42  TPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG---- 96

Query: 279 SDLNIFEHVDIKGNSALHLAAKFG 302
           +D+N     D  G + LHLAAK G
Sbjct: 97  ADVNA---RDKDGRTPLHLAAKNG 117

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 221 ILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVL-LAVENRQTGIYKLLLDRKMLGES 279
           + +AAK G  E+V+ +L+       D++    +  L LA  N    I KLLL+      +
Sbjct: 1   LHLAAKNGNLELVKLLLE----KGADVNLGDTDTALHLAARNGNLEIVKLLLEH----GA 52

Query: 280 DLNIFEHVDIKGNSALHLAAKFGEY 304
           D+N     D  GN+ALHLAA+ G  
Sbjct: 53  DVN---AKDKDGNTALHLAARNGNL 74

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
          G TALH AA +G+  +V  L+E  G + +      ++ G+TALH+AA  GN  +   
Sbjct: 1  GRTALHKAAISGRLELVKYLLE-KGVDIN----RTDEDGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 37  GDTALHIAAAAGQTN-----IVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           GDT LH+AA  G        +   L+E   +   N L  +++ G+T LH AA  G+  + 
Sbjct: 106 GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL--RDEDGNTPLHWAALNGDADIV 163

Query: 92  HCMASKDRELISAADEGLANCSWSSGN--------LEDKEHHREKRGTYMGLSSNDDHGK 143
             +     +  S    G+     ++ N        L DK  H       +   +N +  K
Sbjct: 164 ELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSK 223

Query: 144 SSR 146
            + 
Sbjct: 224 RNI 226

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA 82
           +G+T LH+AA  G   +V  L++  G +    L +++  G TAL LA
Sbjct: 14 GNGNTPLHLAAKYGALELVQWLLK-PGVD----LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEA 89
            G+T LH AA  G  +IV  L+E            +N  G TAL  AA  G   
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEA-----GADPNSRNSYGVTALDPAAKNGRIE 194

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 208 KKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIY 267
           K  D   G   T + +AA+ G  E+V+ +L+     ++  D +    + LA  N    I 
Sbjct: 19  KGADVNLGDTDTALHLAARNGNLEIVKLLLE-HGADVNAKDKDGNTALHLAARNGNLEIV 77

Query: 268 KLLLDRKMLGESDLNI 283
           KLLL+      +D+N+
Sbjct: 78  KLLLEH----GADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 41 LHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
          LH+AA  G   +V  L+E           +     DTALHLAA  GN  + 
Sbjct: 1  LHLAAKNGNLELVKLLLE-------KGADVNLGDTDTALHLAARNGNLEIV 44

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 37 GDTALHIAAAAGQTNIVSELVE 58
          G+T LH+AA  G   +V  L+E
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	523
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.98
PHA02791	284	ankyrin-like protein; Provisional	99.98
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
PHA02730	672	ankyrin-like protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PF13962	113	PGG: Domain of unknown function	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.85
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.85
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
PHA02741	169	hypothetical protein; Provisional	99.82
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.79
KOG0514	452	consensus Ankyrin repeat protein [General function	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.76
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.74
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.73
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.65
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.65
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.56
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.41
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.4
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.4
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.37
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.28
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.28
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.27
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.27
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.25
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.99
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.76
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.71
PF13606	30	Ank_3: Ankyrin repeat	98.71
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.67
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.63
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.61
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.6
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.6
PF13606	30	Ank_3: Ankyrin repeat	98.58
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.58
KOG0522	560	consensus Ankyrin repeat protein [General function	98.58
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.48
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.42
KOG0522	560	consensus Ankyrin repeat protein [General function	98.36
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.29
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.18
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.1
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.1
KOG2384	223	consensus Major histocompatibility complex protein	97.76
KOG0511	516	consensus Ankyrin repeat protein [General function	97.71
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.6
KOG2384	223	consensus Major histocompatibility complex protein	97.6
KOG0511	516	consensus Ankyrin repeat protein [General function	97.57
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.56
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.38
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.77
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.25
KOG2505	591	consensus Ankyrin repeat protein [General function	95.33
KOG2505	591	consensus Ankyrin repeat protein [General function	95.33
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.11
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	85.16
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.85

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-37  Score=256.11  Aligned_cols=212  Identities=20%  Similarity=0.171  Sum_probs=156.0

Q ss_pred             CC-chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHH
Q 041922            1 ME-VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAL   79 (523)
Q Consensus         1 ~~-~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpL   79 (523)
                      |+ -.+.+.++.......+++++++.|....-..|.+|+||||+||..|+.+++++|++.    ....+|.+|..|+|||
T Consensus         1 Me~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq----~nv~~ddkDdaGWtPl   76 (226)
T KOG4412|consen    1 MEYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ----PNVKPDDKDDAGWTPL   76 (226)
T ss_pred             CCccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc----CCCCCCCccccCCchh
Confidence            55 345666777788889999999988543334455999999999999999999999973    2345888999999999


Q ss_pred             hHHHHcCCHHHHHHHHhc-CcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCcc
Q 041922           80 HLAAALGNEAMCHCMASK-DRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFS  158 (523)
Q Consensus        80 h~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~  158 (523)
                      |+||..|+.|+|+.|+.+ |+++                                  |..+                   
T Consensus        77 hia~s~g~~evVk~Ll~r~~adv----------------------------------na~t-------------------  103 (226)
T KOG4412|consen   77 HIAASNGNDEVVKELLNRSGADV----------------------------------NATT-------------------  103 (226)
T ss_pred             hhhhhcCcHHHHHHHhcCCCCCc----------------------------------ceec-------------------
Confidence            999999999999999998 6655                                  3333                   


Q ss_pred             CCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHh
Q 041922          159 VPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILD  238 (523)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~  238 (523)
                                                                              ..|.||||+|+..|+.+++++|++
T Consensus       104 --------------------------------------------------------n~G~T~LHyAagK~r~eIaqlLle  127 (226)
T KOG4412|consen  104 --------------------------------------------------------NGGQTCLHYAAGKGRLEIAQLLLE  127 (226)
T ss_pred             --------------------------------------------------------CCCcceehhhhcCChhhHHHHHHh
Confidence                                                                    346667777777777777777777


Q ss_pred             hCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHH
Q 041922          239 TIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQW  318 (523)
Q Consensus       239 ~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~  318 (523)
                      + |+.++.+|..|+||||.|+.-|+.+++++|++.|+       .+|.+|+.|+||||.|...++.+..           
T Consensus       128 ~-ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a-------~~n~qDk~G~TpL~~al~e~~~d~a-----------  188 (226)
T KOG4412|consen  128 K-GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA-------PLNTQDKYGFTPLHHALAEGHPDVA-----------  188 (226)
T ss_pred             c-CCCCcccccccCchhHHHHhccchhhHHHHHhcCC-------CCCcccccCccHHHHHHhccCchHH-----------
Confidence            6 67777777777777777777777777777777777       7777777777777777656654431           


Q ss_pred             HhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          319 EIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       319 ~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                              ..++..++ ....|++| ||+.++...-
T Consensus       189 --------~lLV~~gAd~~~edke~-t~~~~a~~~l  215 (226)
T KOG4412|consen  189 --------VLLVRAGADTDREDKEG-TALRIACNEL  215 (226)
T ss_pred             --------HHHHHhccceeeccccC-chHHHHHHHH
Confidence                    11222222 46677777 7777666543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.5e-35  Score=298.66  Aligned_cols=293  Identities=12%  Similarity=0.087  Sum_probs=216.0

Q ss_pred             HHHHHH--HcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            5 CLSKFA--MRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         5 ~L~~Aa--~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      .||.++  ..++.+.++.+++.  +.+++.+|.+|.||||+||..|+.++|+.|++.|+     +++.+|.+|.||||+|
T Consensus        40 ~Lh~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GA-----din~~d~~g~TpLh~A  112 (446)
T PHA02946         40 ILHAYCGIKGLDERFVEELLHR--GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGA-----DPNACDKQHKTPLYYL  112 (446)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHC--cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcC-----CCCCCCCCCCCHHHHH
Confidence            455544  34466778888887  77888999999999999999999999999999864     5899999999999999


Q ss_pred             HHcCC--HHHHHHHHhcCcccccccCCCCceeE-eccCCccc-chhhhhhcCCccCCccCCCCCCCccccCCCCCCCCcc
Q 041922           83 AALGN--EAMCHCMASKDRELISAADEGLANCS-WSSGNLED-KEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFS  158 (523)
Q Consensus        83 ~~~g~--~~iv~~Ll~~~~~~~~~~~~~~~l~l-~~~~~~~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~  158 (523)
                      +..++  .+++++|+++|++++...+..+.+++ ++..+..+ +++|+++   +++++.+|..|+||||.|+..      
T Consensus       113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~---gad~~~~d~~G~t~Lh~A~~~------  183 (446)
T PHA02946        113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSI---GFEARIVDKFGKNHIHRHLMS------  183 (446)
T ss_pred             HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhc---cccccccCCCCCCHHHHHHHh------
Confidence            88764  78999999999999865444444222 33334444 4888887   899999999999999976521      


Q ss_pred             CCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcC--hHHH
Q 041922          159 VPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMG--VTEM  232 (523)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g--~~~~  232 (523)
                                                            .....+++++|+++    +.+|.+|.||||+|+..|  +.++
T Consensus       184 --------------------------------------~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~i  225 (446)
T PHA02946        184 --------------------------------------DNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDI  225 (446)
T ss_pred             --------------------------------------cCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHH
Confidence                                                  01113578888887    667889999999999986  8899


Q ss_pred             HHHHHhhCCCcccccccCCCcHHHHHHHcCc-hhHHHHHHhccccCCcc-------------cccccccc-CCCCcHhHH
Q 041922          233 VEKILDTIPVAIHDLDSEKKNLVLLAVENRQ-TGIYKLLLDRKMLGESD-------------LNIFEHVD-IKGNSALHL  297 (523)
Q Consensus       233 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~-~~iv~~Ll~~~~~~~~~-------------~~~in~~d-~~G~TpLH~  297 (523)
                      ++.|++  +++++.+|.+|+||||+|++.++ .+++++|+++|+....+             ...++.++ ..|+||||+
T Consensus       226 v~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~  303 (446)
T PHA02946        226 INLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKM  303 (446)
T ss_pred             HHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHH
Confidence            999885  79999999999999999999988 48999999998631000             00123333 468899999


Q ss_pred             HHHhCCCCCccC---Cc----chhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhh
Q 041922          298 AAKFGEYGPWRI---PG----AALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHK  354 (523)
Q Consensus       298 Aa~~~~~~~~~~---~g----~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~  354 (523)
                      |+..|+.+++..   .|    .++.........+.++.++..++ ++.+ ++|+||+++|...+.
T Consensus       304 Aa~~g~~eivk~Ll~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~  367 (446)
T PHA02946        304 AVEVGSIRCVKYLLDNDIICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNN  367 (446)
T ss_pred             HHHcCCHHHHHHHHHCCCccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCC
Confidence            999999776521   12    12222222223344555566555 5554 578899988876543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-35  Score=300.93  Aligned_cols=229  Identities=15%  Similarity=0.097  Sum_probs=181.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      +..|+.|+..|+.+.++.++...+ ...+..+.+|.||||.|+..|+.++|++|++.|.     +++..+..|.||||.|
T Consensus         2 ~~~l~~ai~~gd~~~v~~ll~~~~-~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga-----~~n~~~~~~~t~L~~A   75 (434)
T PHA02874          2 SQDLRMCIYSGDIEAIEKIIKNKG-NCINISVDETTTPLIDAIRSGDAKIVELFIKHGA-----DINHINTKIPHPLLTA   75 (434)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHH
Confidence            467899999999999999998764 4456778899999999999999999999999864     4888999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCccc-chhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLED-KEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPE  161 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~  161 (523)
                      +..|+.+++++|+++|++....         +......+ ++.+++.   +++++.+|..|.||||.|+.          
T Consensus        76 ~~~~~~~iv~~Ll~~g~~~~~~---------~~~~~~~~~i~~ll~~---g~d~n~~~~~g~T~Lh~A~~----------  133 (434)
T PHA02874         76 IKIGAHDIIKLLIDNGVDTSIL---------PIPCIEKDMIKTILDC---GIDVNIKDAELKTFLHYAIK----------  133 (434)
T ss_pred             HHcCCHHHHHHHHHCCCCCCcc---------hhccCCHHHHHHHHHC---cCCCCCCCCCCccHHHHHHH----------
Confidence            9999999999999999876321         11222222 4677776   88899999999999998773          


Q ss_pred             CCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHH
Q 041922          162 TPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKIL  237 (523)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll  237 (523)
                                                          .+..++++.|+++    +.+|..|.||||+|+..|+.+++++|+
T Consensus       134 ------------------------------------~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll  177 (434)
T PHA02874        134 ------------------------------------KGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL  177 (434)
T ss_pred             ------------------------------------CCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH
Confidence                                                1224577777766    456677888888888888888888888


Q ss_pred             hhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCC
Q 041922          238 DTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGE  303 (523)
Q Consensus       238 ~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  303 (523)
                      +. |++++..|..|+||||+|+..|+.+++++|+++|+       +++.++..|+||||+|+..+.
T Consensus       178 ~~-g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~-------~i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        178 EK-GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN-------HIMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             HC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-------CCcCCCCCCCCHHHHHHHCCh
Confidence            76 77777778888888888888888888888888877       777777778888888776554

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.2e-35  Score=316.87  Aligned_cols=318  Identities=15%  Similarity=0.054  Sum_probs=202.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHH------------------------------------
Q 041922            2 EVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAA------------------------------------   45 (523)
Q Consensus         2 ~~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa------------------------------------   45 (523)
                      .+.+||.|+..|+.+.|+.+++++|.. ....|..|+||||+|+                                    
T Consensus        41 ~~t~LH~A~~~g~~e~V~~ll~~~~~~-~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  119 (682)
T PHA02876         41 PFTAIHQALQLRQIDIVEEIIQQNPEL-IYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDE  119 (682)
T ss_pred             cchHHHHHHHHHhhhHHHHHHHhCccc-chhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHH
Confidence            367999999999999999999999874 3577889999999666                                    


Q ss_pred             ----------------------------------HcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHH
Q 041922           46 ----------------------------------AAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC   91 (523)
Q Consensus        46 ----------------------------------~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv   91 (523)
                                                        ..|+.+++++|++.|     .++|.+|..|.||||+|++.|+.+++
T Consensus       120 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~G-----advn~~d~~G~TpLh~Aa~~G~~~iv  194 (682)
T PHA02876        120 ACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGG-----ADVNAKDIYCITPIHYAAERGNAKMV  194 (682)
T ss_pred             HHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCC-----CCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence                                              457788888898876     45999999999999999999999999


Q ss_pred             HHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhc--------------------------CCccCCccCCCCCC
Q 041922           92 HCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKR--------------------------GTYMGLSSNDDHGK  143 (523)
Q Consensus        92 ~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~--------------------------~~~~~l~~~d~~g~  143 (523)
                      ++|+++|++++..+..+.+ ++.+...++.++ +.|+++.                          ..+.+++..|..|+
T Consensus       195 ~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~  274 (682)
T PHA02876        195 NLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKN  274 (682)
T ss_pred             HHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            9999999999877776665 666665555442 3333221                          23677889999999


Q ss_pred             CccccCCCCCCC--Cc-cCCCCCCCC----CccccchhhhHH----HHHHHHhhcc-------CCCcchhhhhHH-----
Q 041922          144 SSRDSRPDKDGD--TF-SVPETPPVL----ENDQIFQSRNIC----LESAVAVHNK-------DGNARDETATAA-----  200 (523)
Q Consensus       144 tpLh~a~~~~~~--~~-~~l~~~~~~----~~~~~~~~~~~~----~~~~~~l~~~-------~~~~~~~~~~~~-----  200 (523)
                      ||||.|+.....  .. .+++.+.+.    ..+..|.++...    ...++.+...       +..+.++.|.+.     
T Consensus       275 TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~  354 (682)
T PHA02876        275 TPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRN  354 (682)
T ss_pred             CHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCc
Confidence            999988853321  11 223333322    223344433321    1222222221       112223333331     


Q ss_pred             HHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCc-hhHHHHHHhccc
Q 041922          201 VQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQ-TGIYKLLLDRKM  275 (523)
Q Consensus       201 ~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~-~~iv~~Ll~~~~  275 (523)
                      .++++.|++.    +.+|..|.||||+|+..|+.++++.|++. |++++..+..|.||||+|+..++ ..++++|+++|+
T Consensus       355 ~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~-gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~ga  433 (682)
T PHA02876        355 KDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDY-GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGA  433 (682)
T ss_pred             HHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCC
Confidence            3345555554    45555666666666666666666666664 56666666666666666665443 345666666666


Q ss_pred             cCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhh
Q 041922          276 LGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTK  351 (523)
Q Consensus       276 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~  351 (523)
                             ++|.+|.+|+||||+|+..+..                  .+.++.++..++ ++.+|.+|.||+++|.+
T Consensus       434 -------din~~d~~G~TpLh~Aa~~~~~------------------~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        434 -------NVNSKNKDLSTPLHYACKKNCK------------------LDVIEMLLDNGADVNAINIQNQYPLLIALE  485 (682)
T ss_pred             -------CCCcCCCCCChHHHHHHHhCCc------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence                   6666666666666666655421                  012333333444 56666666666666654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.9e-35  Score=303.14  Aligned_cols=266  Identities=14%  Similarity=0.071  Sum_probs=225.5

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC---CHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            7 SKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAG---QTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         7 ~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      +.++..++.+.++.+++.  +.+++..+..|.||||+|+..|   +.++++.|++.|.     ++|.+|..|.||||+|+
T Consensus        19 ~~~~~~~~~~~v~~Ll~~--ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga-----din~~~~~g~TpLh~A~   91 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA--GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA-----DVNAPERCGFTPLHLYL   91 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc--CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHH
Confidence            456788999999999988  7788899999999999999999   9999999999874     59999999999999999


Q ss_pred             HcC-CHHHHHHHHhcCcccccccCCCCc-eeEeccCCc--cc-chhhhhhcCCccCCccCCCCCCCccccCCCCCCCCcc
Q 041922           84 ALG-NEAMCHCMASKDRELISAADEGLA-NCSWSSGNL--ED-KEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFS  158 (523)
Q Consensus        84 ~~g-~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~--~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~  158 (523)
                      ..| +.+++++|+++|++++..+..+.+ ++.+.....  .+ +++|+++   +++++.+|..|.||||.++...     
T Consensus        92 ~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~---gad~~~~d~~g~tpL~~a~~~~-----  163 (471)
T PHA03095         92 YNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK---GADVNALDLYGMTPLAVLLKSR-----  163 (471)
T ss_pred             HcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcC-----
Confidence            999 599999999999999888887777 666663333  23 4888887   8999999999999999765210     


Q ss_pred             CCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHc--ChHHH
Q 041922          159 VPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKM--GVTEM  232 (523)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~--g~~~~  232 (523)
                                                             ....++++.|+++    +..+..|.||||+|+..  ++.++
T Consensus       164 ---------------------------------------~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i  204 (471)
T PHA03095        164 ---------------------------------------NANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARI  204 (471)
T ss_pred             ---------------------------------------CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHH
Confidence                                                   1125688888887    45578899999999875  78899


Q ss_pred             HHHHHhhCCCcccccccCCCcHHHHHHHcCch--hHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCC
Q 041922          233 VEKILDTIPVAIHDLDSEKKNLVLLAVENRQT--GIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIP  310 (523)
Q Consensus       233 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~--~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~  310 (523)
                      ++.|++. |++++.+|..|+||||+|+..++.  .+++.|++.|+       ++|.+|.+|+||||+|+..|+.+++   
T Consensus       205 ~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~-------din~~d~~g~TpLh~A~~~~~~~~v---  273 (471)
T PHA03095        205 VRELIRA-GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI-------SINARNRYGQTPLHYAAVFNNPRAC---  273 (471)
T ss_pred             HHHHHHc-CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC-------CCCCcCCCCCCHHHHHHHcCCHHHH---
Confidence            9999997 899999999999999999999875  68899999999       9999999999999999999985543   


Q ss_pred             cchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          311 GAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       311 g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                                      +.++..++ ++.+|.+|+||+++|....
T Consensus       274 ----------------~~LL~~gad~n~~~~~g~tpl~~A~~~~  301 (471)
T PHA03095        274 ----------------RRLIALGADINAVSSDGNTPLSLMVRNN  301 (471)
T ss_pred             ----------------HHHHHcCCCCcccCCCCCCHHHHHHHhC
Confidence                            33333344 6899999999999998754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.1e-34  Score=304.96  Aligned_cols=274  Identities=11%  Similarity=0.035  Sum_probs=207.3

Q ss_pred             HcCCHHHHHHHHHcCCC-cccccc-CCCCCcHHHHHHHc--CCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcC
Q 041922           11 MRGQWDNFVQAYENNPM-SREAKL-TRSGDTALHIAAAA--GQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALG   86 (523)
Q Consensus        11 ~~g~~~~v~~ll~~~~~-~~~~~~-~~~g~T~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g   86 (523)
                      +.++.+.++.|++.  + .+++.+ |..|.||||.|+..  ++.+++++|++.|.     +++.+|.+|+||||+|++.|
T Consensus       151 ~~v~leiVk~LLe~--G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GA-----DVN~kD~~G~TPLH~Aa~~g  223 (764)
T PHA02716        151 RGIDLDLIKYMVDV--GIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGV-----NVNLQNNHLITPLHTYLITG  223 (764)
T ss_pred             cCCCHHHHHHHHHC--CCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcC
Confidence            45888888888887  5 677777 88899999988654  67899999998763     58899999999999999988


Q ss_pred             C--HHHHHHHHhcCcccccccCCCCc-eeEec-------------------------------------cCCccc-chhh
Q 041922           87 N--EAMCHCMASKDRELISAADEGLA-NCSWS-------------------------------------SGNLED-KEHH  125 (523)
Q Consensus        87 ~--~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~-------------------------------------~~~~~~-v~~l  125 (523)
                      +  .+++++|+++|++++..+..+.+ ++.+.                                     ..++.+ +++|
T Consensus       224 ~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklL  303 (764)
T PHA02716        224 NVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSF  303 (764)
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHH
Confidence            5  48999999999998887776666 43221                                     111222 3666


Q ss_pred             hhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 041922          126 REKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELK  205 (523)
Q Consensus       126 ~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~  205 (523)
                      +++   +++++.+|..|+||||.|+.                                            .+....++++
T Consensus       304 Le~---GAdIN~kD~~G~TPLH~Aaa--------------------------------------------~~~~~~eIVk  336 (764)
T PHA02716        304 LQP---GVKLHYKDSAGRTCLHQYIL--------------------------------------------RHNISTDIIK  336 (764)
T ss_pred             HhC---CCceeccCCCCCCHHHHHHH--------------------------------------------HhCCCchHHH
Confidence            666   88999999999999997641                                            0111245888


Q ss_pred             HHHhc----ccccCCCChHHHHHHH--------------cChHHHHHHHHhhCCCcccccccCCCcHHHH----HHHcCc
Q 041922          206 FMKKK----DQQSGRKATPILIAAK--------------MGVTEMVEKILDTIPVAIHDLDSEKKNLVLL----AVENRQ  263 (523)
Q Consensus       206 ~Ll~~----~~~~~~g~tpLh~Aa~--------------~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~----A~~~~~  263 (523)
                      +|+++    +.+|..|+||||+|+.              .|+.+++++|+++ |++++.+|..|+||||.    |...++
T Consensus       337 lLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y~~~a~n~~~  415 (764)
T PHA02716        337 LLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSYICTAQNYMY  415 (764)
T ss_pred             HHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHHHHHHHhcCh
Confidence            99887    6788899999999875              3789999999997 99999999999999994    233567


Q ss_pred             hhHHHHHHhccccCC------------c------------------------------------------cccccccccC
Q 041922          264 TGIYKLLLDRKMLGE------------S------------------------------------------DLNIFEHVDI  289 (523)
Q Consensus       264 ~~iv~~Ll~~~~~~~------------~------------------------------------------~~~~in~~d~  289 (523)
                      .+++++|++.++...            .                                          ...++|.+|.
T Consensus       416 ~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~  495 (764)
T PHA02716        416 YDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCET  495 (764)
T ss_pred             HHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCC
Confidence            899999988653100            0                                          0003466788


Q ss_pred             CCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          290 KGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       290 ~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                      .|+||||+|+..|+.+.+.              .+.++.++..++ ++.+|++|+||+++|.++.
T Consensus       496 ~G~TPLh~Aa~~g~~~~v~--------------~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        496 SGMTPLHVSIISHTNANIV--------------MDSFVYLLSIQYNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             CCCCHHHHHHHcCCccchh--------------HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Confidence            9999999999998865431              123344555555 7999999999999999865

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.6e-33  Score=277.35  Aligned_cols=207  Identities=21%  Similarity=0.221  Sum_probs=184.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccc-cCCChHHhHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN-DRGDTALHLA   82 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d-~~G~TpLh~A   82 (523)
                      ..++.|++.|+++.++++++.. +..++..|.+|.|+||+||.+++.+++++|+++++     ++|..+ .-|.||||+|
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga-----dvn~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGA-----DVNAIGGVLGSTPLHWA  119 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCC-----CccccCCCCCCCcchHH
Confidence            4578999999999999999987 77888899999999999999999999999999874     588888 6789999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +++|+..+|++|+++|+++                                                             
T Consensus       120 ar~G~~~vv~lLlqhGAdp-------------------------------------------------------------  138 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADP-------------------------------------------------------------  138 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCC-------------------------------------------------------------
Confidence            9999999999999999987                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +.+|.+|.||||+|++.|++-+|-+||.+ ++
T Consensus       139 ------------------------------------------------t~~D~~G~~~lHla~~~~~~~~vayll~~-~~  169 (600)
T KOG0509|consen  139 ------------------------------------------------TLKDKQGLTPLHLAAQFGHTALVAYLLSK-GA  169 (600)
T ss_pred             ------------------------------------------------ceecCCCCcHHHHHHHhCchHHHHHHHHh-cc
Confidence                                                            33556799999999999999999999998 79


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHHHhccccCCcccccccccc-CCCCcHhHHHHHhCCCCCccCCcchhhhHHHhH
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVD-IKGNSALHLAAKFGEYGPWRIPGAALQMQWEIK  321 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d-~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~  321 (523)
                      +++.+|.+|+||||+|+.+|....++.|++-++       .++.+| ++|+||||.|+..|+.+++.+            
T Consensus       170 d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a-------~~~~~d~~~g~TpLHwa~~~gN~~~v~L------------  230 (600)
T KOG0509|consen  170 DIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA-------SLLLTDDNHGNTPLHWAVVGGNLTAVKL------------  230 (600)
T ss_pred             cCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc-------cccccccccCCchHHHHHhcCCcceEeh------------
Confidence            999999999999999999999888999999999       888888 999999999999999876521            


Q ss_pred             HHHHHHhhCCccc-ccccCCCCCChhHHhhhh
Q 041922          322 WYKFVKESMPRYF-FLGYNNKGKTPKEIFTKT  352 (523)
Q Consensus       322 ~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~  352 (523)
                             ....+. .+..|.+|+||+++|.++
T Consensus       231 -------l~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  231 -------LLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             -------hhhcCCcccccccCCCCHHHHHHHh
Confidence                   111111 478899999999999887

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=292.04  Aligned_cols=309  Identities=17%  Similarity=0.176  Sum_probs=243.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      -+||.|+....++.++.+++.  +.+..-.+.++.+|||+|+..|+.+..+.|++++     .++|..|+.|.||||+||
T Consensus        90 ~~l~~a~~~~~~~~i~~Lls~--gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~-----~dvnl~de~~~TpLh~A~  162 (929)
T KOG0510|consen   90 TPLHAAVEYNQGDKIQVLLSY--GADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYG-----ADVNLEDENGFTPLHLAA  162 (929)
T ss_pred             chhHHHhhcchHHHHHHHHhc--CCCCChhhhhccCchhhccccchHHHHHHHHHhc-----CCccccccCCCchhhHHH
Confidence            468889999999999999998  6777788999999999999999999999999986     459999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhc--CCccCCccCCCCCCCccccCCCCCCCCc--
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKR--GTYMGLSSNDDHGKSSRDSRPDKDGDTF--  157 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~--~~~~~l~~~d~~g~tpLh~a~~~~~~~~--  157 (523)
                      +.++.|..+.|++.|+++...+.++.. +|-++..+..+. ++.+...  +.+..+|.-|++|.||||.|+.......  
T Consensus       163 ~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk  242 (929)
T KOG0510|consen  163 RKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLK  242 (929)
T ss_pred             hcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHH
Confidence            999999889999999999777666665 566666666663 6666532  4567889999999999999985332211  


Q ss_pred             cCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHH----HHHHHHHHhc----ccccCCCChHHHHHHHcCh
Q 041922          158 SVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAA----VQELKFMKKK----DQQSGRKATPILIAAKMGV  229 (523)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~  229 (523)
                      .+++.+..    .-....+.|...-..+.+.+.+++++.|.+.    .+.++.|+..    +.+++++.||||.||.+|+
T Consensus       243 ~~L~n~~~----~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~  318 (929)
T KOG0510|consen  243 MCLQNGKK----IADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGR  318 (929)
T ss_pred             HHHhCccc----cchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHccc
Confidence            12222111    1112223455555556677778887777764    5689999888    6778899999999999999


Q ss_pred             HHHHHHHHh-hCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccc--cccCCCCcHhHHHHHhCCCCC
Q 041922          230 TEMVEKILD-TIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFE--HVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       230 ~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in--~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      .+.|+.||+ ..-...+..|-.|+||||+|+++||.++++.|+++|+.      ..+  ..|.+|+||||+|+..|+..+
T Consensus       319 ~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~------~~~~~e~D~dg~TaLH~Aa~~g~~~a  392 (929)
T KOG0510|consen  319 INTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL------FLNMSEADSDGNTALHLAAKYGNTSA  392 (929)
T ss_pred             HHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChh------hhcccccccCCchhhhHHHHhccHHH
Confidence            999999999 43457888899999999999999999999999999994      233  569999999999999999654


Q ss_pred             ccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHH
Q 041922          307 WRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEI  348 (523)
Q Consensus       307 ~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~l  348 (523)
                                         |..++..++ +..+|++|++++|+
T Consensus       393 -------------------v~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  393 -------------------VQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             -------------------HHHHHHcCCceeeccccccccccc
Confidence                               334445555 56778888887774

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=291.03  Aligned_cols=239  Identities=16%  Similarity=0.132  Sum_probs=194.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhccc------------------c
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGEN------------------A   64 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~------------------~   64 (523)
                      ..+||.|+..|+.+.++.+++.  +.+++..+..|.||||.|+..|+.+++++|++.|.+.                  .
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~--Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~  113 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKH--GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC  113 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence            4689999999999999999988  6778888999999999999999999999999876421                  1


Q ss_pred             cccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCC
Q 041922           65 SNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKS  144 (523)
Q Consensus        65 ~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~t  144 (523)
                      ..+++.+|..|.||||+|+..|+.+++++|++.|+++                                  +.+|..|.|
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~----------------------------------n~~d~~g~t  159 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV----------------------------------NIEDDNGCY  159 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC----------------------------------CCcCCCCCC
Confidence            2457888999999999999999999999999987655                                  667888999


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChH
Q 041922          145 SRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATP  220 (523)
Q Consensus       145 pLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tp  220 (523)
                      |||.|+.                                              ....++++.|+++    +..+..|.||
T Consensus       160 pLh~A~~----------------------------------------------~~~~~iv~~Ll~~g~~~n~~~~~g~tp  193 (434)
T PHA02874        160 PIHIAIK----------------------------------------------HNFFDIIKLLLEKGAYANVKDNNGESP  193 (434)
T ss_pred             HHHHHHH----------------------------------------------CCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            9997762                                              1234588888877    5567789999


Q ss_pred             HHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHH
Q 041922          221 ILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAK  300 (523)
Q Consensus       221 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~  300 (523)
                      ||+|+..|+.+++++|++. |++++.++..|+||||.|+..++ +++++|+ .|+       ++|.+|.+|+||||+|+.
T Consensus       194 L~~A~~~g~~~iv~~Ll~~-g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~-------~in~~d~~G~TpLh~A~~  263 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDH-GNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNA-------SINDQDIDGSTPLHHAIN  263 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCC-------CCCCcCCCCCCHHHHHHh
Confidence            9999999999999999987 78888899999999999998765 5666666 466       888999999999999998


Q ss_pred             hCC-CCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhh
Q 041922          301 FGE-YGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKT  352 (523)
Q Consensus       301 ~~~-~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~  352 (523)
                      .+. .++                   ++.++..++ ++.+|++|+||+++|.+.
T Consensus       264 ~~~~~~i-------------------v~~Ll~~gad~n~~d~~g~TpL~~A~~~  298 (434)
T PHA02874        264 PPCDIDI-------------------IDILLYHKADISIKDNKGENPIDTAFKY  298 (434)
T ss_pred             cCCcHHH-------------------HHHHHHCcCCCCCCCCCCCCHHHHHHHh
Confidence            653 222                   222333333 588899999999998754

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-33  Score=305.13  Aligned_cols=282  Identities=11%  Similarity=0.033  Sum_probs=214.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      +.++.|+..|+.+.++.|++.  +.+++.+|..|.||||+||..|+.++|++|++.|+     +++..+.+|.||||+|+
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~--Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Ga-----d~n~~~~~g~t~L~~A~  219 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEG--GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGA-----DVNIIALDDLSVLECAV  219 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-----CcCccCCCCCCHHHHHH
Confidence            457788899999999999988  77888999999999999999999999999999864     48889999999999999


Q ss_pred             HcCCHHHHHHHHhcCcc-----------------------------cccccCCCCc-eeEeccCCcc-c-chhhhhhcCC
Q 041922           84 ALGNEAMCHCMASKDRE-----------------------------LISAADEGLA-NCSWSSGNLE-D-KEHHREKRGT  131 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~-----------------------------~~~~~~~~~~-l~l~~~~~~~-~-v~~l~~~~~~  131 (523)
                      ..|+.+++++|++.+++                             ++..+..+.+ ++.++..++. . +++|++.   
T Consensus       220 ~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~---  296 (682)
T PHA02876        220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER---  296 (682)
T ss_pred             HcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC---
Confidence            99998888877765543                             4333444444 5555554443 2 3677776   


Q ss_pred             ccCCccCCCCCCCccccCCCCCC--CCc-cCCCCCCCC----CccccchhhhHH----HHHHHHhhcc-------CCCcc
Q 041922          132 YMGLSSNDDHGKSSRDSRPDKDG--DTF-SVPETPPVL----ENDQIFQSRNIC----LESAVAVHNK-------DGNAR  193 (523)
Q Consensus       132 ~~~l~~~d~~g~tpLh~a~~~~~--~~~-~~l~~~~~~----~~~~~~~~~~~~----~~~~~~l~~~-------~~~~~  193 (523)
                      +++++.+|.+|.||||.|+....  ... .+++.+.+.    ..+..|.++...    ......+.+.       +..+.
T Consensus       297 gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~  376 (682)
T PHA02876        297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK  376 (682)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCC
Confidence            88999999999999998875332  111 233333333    234455554422    2333333322       23344


Q ss_pred             hhhhhH----HHHHHHHHHhc----ccccCCCChHHHHHHHcCh-HHHHHHHHhhCCCcccccccCCCcHHHHHHHcC-c
Q 041922          194 DETATA----AVQELKFMKKK----DQQSGRKATPILIAAKMGV-TEMVEKILDTIPVAIHDLDSEKKNLVLLAVENR-Q  263 (523)
Q Consensus       194 ~~~~~~----~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~-~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~-~  263 (523)
                      ++.|.+    ..++++.|+++    +..+..|.||||+|+..++ .++++.|++. |++++.+|.+|+||||+|+..+ +
T Consensus       377 TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~-gadin~~d~~G~TpLh~Aa~~~~~  455 (682)
T PHA02876        377 TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDR-GANVNSKNKDLSTPLHYACKKNCK  455 (682)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhC-CCCCCcCCCCCChHHHHHHHhCCc
Confidence            555554    46799999998    5667889999999998766 5678999987 8999999999999999999977 6


Q ss_pred             hhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCC
Q 041922          264 TGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGE  303 (523)
Q Consensus       264 ~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  303 (523)
                      .+++++|+++|+       ++|.+|..|+||||+|+..+.
T Consensus       456 ~~iv~lLl~~Ga-------d~n~~d~~g~tpl~~a~~~~~  488 (682)
T PHA02876        456 LDVIEMLLDNGA-------DVNAINIQNQYPLLIALEYHG  488 (682)
T ss_pred             HHHHHHHHHCCC-------CCCCCCCCCCCHHHHHHHhCC
Confidence            899999999999       999999999999999997653

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-33  Score=293.50  Aligned_cols=261  Identities=14%  Similarity=0.056  Sum_probs=205.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .|||.|+..|+.+.++.|++.  +.+++.+|.+|.||||+||..|+.++++.|++.+..     .+  ...+.+|+|.|+
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~--gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~-----~~--~~~~~~~l~~a~  109 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTR--GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINK-----CS--VFYTLVAIKDAF  109 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhc-----cc--cccchhhHHHHH
Confidence            479999999999999999987  677888899999999999999999999999987532     11  156789999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcc---cchhhhhhcCCccCCccCCCC-CCCccccCCCCCCCCccC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLE---DKEHHREKRGTYMGLSSNDDH-GKSSRDSRPDKDGDTFSV  159 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~---~v~~l~~~~~~~~~l~~~d~~-g~tpLh~a~~~~~~~~~~  159 (523)
                      ..|+.++++.|+..+.+.....+. .........+..   -+++|+++   +++++.+|.. |+||||.|+.        
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~iv~~Ll~~---gadin~~~~~~g~tpLh~A~~--------  177 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDL-VYIDKKSKDDIIEAEITKLLLSY---GADINMKDRHKGNTALHYATE--------  177 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcH-HHHhhccchhhHHHHHHHHHHHc---CCCCCccCCCCCCCHHHHHHh--------
Confidence            999999999999875432111100 001111111111   24778877   9999999999 9999998873        


Q ss_pred             CCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHH
Q 041922          160 PETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEK  235 (523)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~  235 (523)
                                                            .+..++++.|+++    +..|..|.||||.|+..|+.++++.
T Consensus       178 --------------------------------------~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~  219 (477)
T PHA02878        178 --------------------------------------NKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHI  219 (477)
T ss_pred             --------------------------------------CCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence                                                  1235688999887    5678899999999999999999999


Q ss_pred             HHhhCCCcccccccCCCcHHHHHHHc-CchhHHHHHHhccccCCccccccccccC-CCCcHhHHHHHhCCCCCccCCcch
Q 041922          236 ILDTIPVAIHDLDSEKKNLVLLAVEN-RQTGIYKLLLDRKMLGESDLNIFEHVDI-KGNSALHLAAKFGEYGPWRIPGAA  313 (523)
Q Consensus       236 Ll~~~~~~~~~~d~~G~t~Lh~A~~~-~~~~iv~~Ll~~~~~~~~~~~~in~~d~-~G~TpLH~Aa~~~~~~~~~~~g~~  313 (523)
                      |++. |++++.+|..|+||||+|+.. ++.+++++|+++|+       ++|.++. .|+||||+|+  ++.+        
T Consensus       220 Ll~~-ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga-------dvn~~~~~~g~TpLh~A~--~~~~--------  281 (477)
T PHA02878        220 LLEN-GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV-------DVNAKSYILGLTALHSSI--KSER--------  281 (477)
T ss_pred             HHHc-CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC-------CCCccCCCCCCCHHHHHc--cCHH--------
Confidence            9997 899999999999999999976 68999999999999       9999986 8999999994  3322        


Q ss_pred             hhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhh
Q 041922          314 LQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKT  352 (523)
Q Consensus       314 l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~  352 (523)
                                 .++.++..++ ++.+|.+|+||+++|.+.
T Consensus       282 -----------~v~~Ll~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        282 -----------KLKLLLEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             -----------HHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence                       1233344444 689999999999999864

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-33  Score=292.48  Aligned_cols=243  Identities=13%  Similarity=0.058  Sum_probs=209.8

Q ss_pred             chHHHHHHHcC---CHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC-CHHHHHHHHHHhcccccccccccccCCChH
Q 041922            3 VNCLSKFAMRG---QWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAG-QTNIVSELVEIMGENASNVLKIQNDRGDTA   78 (523)
Q Consensus         3 ~~~L~~Aa~~g---~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g-~~~~v~~Ll~~~~~~~~~~~~~~d~~G~Tp   78 (523)
                      ..+||.|+..|   +.+.++.+++.  +.+++.++..|.||||+|+..| +.++++.|++.|.     +++.+|..|+||
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~--Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga-----~in~~~~~g~tp  120 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEA--GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA-----DVNAKDKVGRTP  120 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCC-----CCCCCCCCCCCH
Confidence            35899999998   88999999988  7888999999999999999999 5999999999864     599999999999


Q ss_pred             HhHHH--HcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCccc---chhhhhhcCCccCCccCCCCCCCccccCCCC
Q 041922           79 LHLAA--ALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLED---KEHHREKRGTYMGLSSNDDHGKSSRDSRPDK  152 (523)
Q Consensus        79 Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~---v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~  152 (523)
                      ||+|+  ..++.+++++|++.|++++..+..+.+ ++.+...+...   +++|+++   +++++..|..|+||||.++..
T Consensus       121 Lh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~---g~~~~~~d~~g~t~Lh~~~~~  197 (471)
T PHA03095        121 LHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDA---GADVYAVDDRFRSLLHHHLQS  197 (471)
T ss_pred             HHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHH
Confidence            99999  567899999999999999888877766 65555555333   4788887   889988899999999976520


Q ss_pred             CCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcC
Q 041922          153 DGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMG  228 (523)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g  228 (523)
                                                                  .....++++.|++.    +.+|..|.||||+|+..|
T Consensus       198 --------------------------------------------~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        198 --------------------------------------------FKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             --------------------------------------------CCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence                                                        01123477888877    678889999999999999


Q ss_pred             hH--HHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          229 VT--EMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       229 ~~--~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      +.  .+++.|++. |++++.+|.+|+||||+|+..|+.+++++|+++|+       ++|.+|.+|+||||+|+..++.++
T Consensus       234 ~~~~~~v~~ll~~-g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~ga-------d~n~~~~~g~tpl~~A~~~~~~~~  305 (471)
T PHA03095        234 SCKRSLVLPLLIA-GISINARNRYGQTPLHYAAVFNNPRACRRLIALGA-------DINAVSSDGNTPLSLMVRNNNGRA  305 (471)
T ss_pred             CchHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCcccCCCCCCHHHHHHHhCCHHH
Confidence            75  578888886 89999999999999999999999999999999999       999999999999999999999765


Q ss_pred             c
Q 041922          307 W  307 (523)
Q Consensus       307 ~  307 (523)
                      +
T Consensus       306 v  306 (471)
T PHA03095        306 V  306 (471)
T ss_pred             H
Confidence            5

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.3e-33  Score=283.79  Aligned_cols=243  Identities=15%  Similarity=0.144  Sum_probs=200.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHh
Q 041922            1 MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALH   80 (523)
Q Consensus         1 ~~~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh   80 (523)
                      |+-..|+.|+..|+.+.++.+++.  +.+.+..+.+|.||||+|+..|+.+++++|++.|.     +++.++.+|.||||
T Consensus         1 ~~~~~L~~A~~~g~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-----~~~~~~~~~~t~L~   73 (413)
T PHA02875          1 MDQVALCDAILFGELDIARRLLDI--GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA-----IPDVKYPDIESELH   73 (413)
T ss_pred             CCchHHHHHHHhCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-----CccccCCCcccHHH
Confidence            566789999999999999999998  67788888899999999999999999999999864     47778889999999


Q ss_pred             HHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCC
Q 041922           81 LAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVP  160 (523)
Q Consensus        81 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l  160 (523)
                      .|+..|+.+++++|++.|++..                                 +..+.+|.||||.|+.         
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~---------------------------------~~~~~~g~tpL~~A~~---------  111 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFAD---------------------------------DVFYKDGMTPLHLATI---------  111 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCccc---------------------------------ccccCCCCCHHHHHHH---------
Confidence            9999999999999999986542                                 2345678999998762         


Q ss_pred             CCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHH
Q 041922          161 ETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKI  236 (523)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~L  236 (523)
                                                           .+..++++.|+++    +.++..|.||||+|+..|+.++++.|
T Consensus       112 -------------------------------------~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L  154 (413)
T PHA02875        112 -------------------------------------LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL  154 (413)
T ss_pred             -------------------------------------hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                                                 1224688888887    56677899999999999999999999


Q ss_pred             HhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCC-cHhHHHHHhCCCCCccCCcchhh
Q 041922          237 LDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN-SALHLAAKFGEYGPWRIPGAALQ  315 (523)
Q Consensus       237 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~-TpLH~Aa~~~~~~~~~~~g~~l~  315 (523)
                      ++. |++++.+|..|+||||+|+..|+.+++++|+++|+       +++..+.+|. ||+|+|+..++.+++..      
T Consensus       155 l~~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga-------~~n~~~~~~~~t~l~~A~~~~~~~iv~~------  220 (413)
T PHA02875        155 IDH-KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA-------NIDYFGKNGCVAALCYAIENNKIDIVRL------  220 (413)
T ss_pred             Hhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-------CCCcCCCCCCchHHHHHHHcCCHHHHHH------
Confidence            997 88999999999999999999999999999999999       8888888774 88999999998665411      


Q ss_pred             hHHHhHHHHHHHhhCCcccccccCCCCCChhHHhhhh
Q 041922          316 MQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKT  352 (523)
Q Consensus       316 ~~~~~~~~~~v~~~~~~~~~~~~n~~G~Tpl~la~~~  352 (523)
                               .++.....+.....+++|.||++++...
T Consensus       221 ---------Ll~~gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        221 ---------FIKRGADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             ---------HHHCCcCcchHhhcCCCchHHHHHHHhh
Confidence                     1122222222345578899999987643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.4e-33  Score=263.48  Aligned_cols=194  Identities=19%  Similarity=0.153  Sum_probs=137.1

Q ss_pred             cCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHH
Q 041922           12 RGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC   91 (523)
Q Consensus        12 ~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv   91 (523)
                      .++.+.++.+++.  +.  +..|.+|+||||+|+..|+.++++.|++.+.     +++.+  +|+||||+|+..|+.+++
T Consensus         9 ~~~~~~~~~Lis~--~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga-----~~n~~--d~~TpLh~Aa~~g~~eiV   77 (284)
T PHA02791          9 WKSKQLKSFLSSK--DA--FKADVHGHSALYYAIADNNVRLVCTLLNAGA-----LKNLL--ENEFPLHQAATLEDTKIV   77 (284)
T ss_pred             cCHHHHHHHHHhC--CC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcC-----CCcCC--CCCCHHHHHHHCCCHHHH
Confidence            3455556556654  33  4578999999999999999999999999764     35554  478999999999999999


Q ss_pred             HHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCcccc
Q 041922           92 HCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQI  171 (523)
Q Consensus        92 ~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~  171 (523)
                      ++|++.|+++                                  +.+|..|+||||+|+.                    
T Consensus        78 ~lLL~~Gadv----------------------------------n~~d~~G~TpLh~Aa~--------------------  103 (284)
T PHA02791         78 KILLFSGMDD----------------------------------SQFDDKGNTALYYAVD--------------------  103 (284)
T ss_pred             HHHHHCCCCC----------------------------------CCCCCCCCCHHHHHHH--------------------
Confidence            9999987765                                  4566677777776652                    


Q ss_pred             chhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCC-ChHHHHHHHcChHHHHHHHHhhCCCcccc
Q 041922          172 FQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRK-ATPILIAAKMGVTEMVEKILDTIPVAIHD  246 (523)
Q Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~  246 (523)
                                                .+..++++.|+++    +.++..| .||||+|+..|+.+++++|+++.+..   
T Consensus       104 --------------------------~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---  154 (284)
T PHA02791        104 --------------------------SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---  154 (284)
T ss_pred             --------------------------cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---
Confidence                                      1123466666665    3344455 36777777777777777777653322   


Q ss_pred             cc-cCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcH-hHHHHHhCCCCC
Q 041922          247 LD-SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSA-LHLAAKFGEYGP  306 (523)
Q Consensus       247 ~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~Tp-LH~Aa~~~~~~~  306 (523)
                      .| ..|+||||+|+++|+.+++++|+++|+       ++|.+|..|.|| ||+|+..|+.++
T Consensus       155 ~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA-------d~n~~d~~g~t~~L~~Aa~~~~~e~  209 (284)
T PHA02791        155 FDLAILLSCIHITIKNGHVDMMILLLDYMT-------STNTNNSLLFIPDIKLAIDNKDLEM  209 (284)
T ss_pred             cccccCccHHHHHHHcCCHHHHHHHHHCCC-------CCCcccCCCCChHHHHHHHcCCHHH
Confidence            22 246777777777777777777777777       677777777765 777777777543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=292.72  Aligned_cols=241  Identities=19%  Similarity=0.141  Sum_probs=215.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHH-----HHHcCCHHHHHHHHHHhcccccccccccccCCCh
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHI-----AAAAGQTNIVSELVEIMGENASNVLKIQNDRGDT   77 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~-----Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~T   77 (523)
                      ..+||.|+..|+.+.++.+++.  +.+++..+..|.||||+     |+..|+.++++.|++.|+     +++..|..|.|
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll~~--g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga-----~i~~~d~~g~t  108 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILLDN--GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA-----NVNAPDNNGIT  108 (480)
T ss_pred             chhhhhhhccCCHHHHHHHHHc--CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCC-----CCCCCCCCCCc
Confidence            4689999999999999999998  67788889999999999     999999999999999864     47899999999


Q ss_pred             HHhHHH--HcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCC--ccc-chhhhhhcCCccCCccCCCCCCCccccCCC
Q 041922           78 ALHLAA--ALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGN--LED-KEHHREKRGTYMGLSSNDDHGKSSRDSRPD  151 (523)
Q Consensus        78 pLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~--~~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~  151 (523)
                      |||+|+  ..|+.+++++|+++|++++..+..+.+ ++.++..+  +.+ +++|+++   +++++.+|..|.||||.|+.
T Consensus       109 pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~---g~din~~d~~g~tpL~~A~~  185 (480)
T PHA03100        109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK---GVDINAKNRYGYTPLHIAVE  185 (480)
T ss_pred             hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC---CCCcccccCCCCCHHHHHHH
Confidence            999999  999999999999999999888777777 77777777  444 4888887   89999999999999998872


Q ss_pred             CCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCC------ChHH
Q 041922          152 KDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRK------ATPI  221 (523)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g------~tpL  221 (523)
                                                                    .+..++++.|+++    +..+..|      .|||
T Consensus       186 ----------------------------------------------~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l  219 (480)
T PHA03100        186 ----------------------------------------------KGNIDVIKFLLDNGADINAGDIETLLFTIFETPL  219 (480)
T ss_pred             ----------------------------------------------hCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHH
Confidence                                                          1235688999887    4445566      8999


Q ss_pred             HHHHHcCh--HHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHH
Q 041922          222 LIAAKMGV--TEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAA  299 (523)
Q Consensus       222 h~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa  299 (523)
                      |.|+..|+  .++++.|++. |++++.+|..|+||||+|+.+|+.+++++|+++|+       ++|.+|.+|+||||+|+
T Consensus       220 ~~a~~~~~~~~~iv~~Ll~~-g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga-------d~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        220 HIAACYNEITLEVVNYLLSY-GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA-------NPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             HHHHHhCcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCCccCCCCCcHHHHHH
Confidence            99999999  9999999997 89999999999999999999999999999999999       99999999999999999


Q ss_pred             HhCCCCCc
Q 041922          300 KFGEYGPW  307 (523)
Q Consensus       300 ~~~~~~~~  307 (523)
                      ..++.+++
T Consensus       292 ~~~~~~iv  299 (480)
T PHA03100        292 LNNNKEIF  299 (480)
T ss_pred             HhCCHHHH
Confidence            99987654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-32  Score=288.56  Aligned_cols=260  Identities=15%  Similarity=0.103  Sum_probs=219.1

Q ss_pred             CCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH-----HHHcCC
Q 041922           13 GQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL-----AAALGN   87 (523)
Q Consensus        13 g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~-----A~~~g~   87 (523)
                      ...+.++.++.+  +...+..+..+.||||.|+..|+.++|+.|++.|.     +++..+..|.||||+     |+..|+
T Consensus        13 ~~~~~~~~~~~~--~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~-----~~~~~~~~~~t~L~~~~~~~a~~~~~   85 (480)
T PHA03100         13 IKVKNIKYIIME--DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGA-----DINSSTKNNSTPLHYLSNIKYNLTDV   85 (480)
T ss_pred             HHHHHHHHHHhc--CccchhhhcccchhhhhhhccCCHHHHHHHHHcCC-----CCCCccccCcCHHHHHHHHHHHhhch
Confidence            344566667765  34455678899999999999999999999999864     488899999999999     999999


Q ss_pred             HHHHHHHHhcCcccccccCCCCc-eeEec--cCCccc-chhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           88 EAMCHCMASKDRELISAADEGLA-NCSWS--SGNLED-KEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        88 ~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~--~~~~~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      .+++++|++.|++++..+..+.+ ++.++  ..++.+ +++|+++   +++++..|..|.||||.|+..           
T Consensus        86 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~---g~~~~~~~~~g~t~L~~A~~~-----------  151 (480)
T PHA03100         86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDN---GANVNIKNSDGENLLHLYLES-----------  151 (480)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHc---CCCCCccCCCCCcHHHHHHHc-----------
Confidence            99999999999999766666666 66666  555555 4888887   899999999999999988731           


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhh
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDT  239 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~  239 (523)
                                                      + ....++++.|+++    +.++..|.||||+|+..|+.+++++|++.
T Consensus       152 --------------------------------~-~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  198 (480)
T PHA03100        152 --------------------------------N-KIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN  198 (480)
T ss_pred             --------------------------------C-CChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence                                            1 0135688999888    56677999999999999999999999997


Q ss_pred             CCCcccccccCC------CcHHHHHHHcCc--hhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCc
Q 041922          240 IPVAIHDLDSEK------KNLVLLAVENRQ--TGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPG  311 (523)
Q Consensus       240 ~~~~~~~~d~~G------~t~Lh~A~~~~~--~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g  311 (523)
                       |++++..+..|      .||||.|+..++  .+++++|+++|+       ++|.+|..|+||||+|+..++.+++    
T Consensus       199 -ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~-------din~~d~~g~TpL~~A~~~~~~~iv----  266 (480)
T PHA03100        199 -GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV-------PINIKDVYGFTPLHYAVYNNNPEFV----  266 (480)
T ss_pred             -CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC-------CCCCCCCCCCCHHHHHHHcCCHHHH----
Confidence             89999999999      999999999999  999999999999       9999999999999999999986543    


Q ss_pred             chhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          312 AALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       312 ~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                                     +.++..++ ++.+|.+|+||+++|.+..
T Consensus       267 ---------------~~Ll~~gad~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        267 ---------------KYLLDLGANPNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             ---------------HHHHHcCCCCCccCCCCCcHHHHHHHhC
Confidence                           22333333 6899999999999998754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.6e-31  Score=266.78  Aligned_cols=258  Identities=16%  Similarity=0.169  Sum_probs=210.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .|+|.|+..|+.+.++.+++.  ++++|..|..|.||||+||..++.|..+.|++.++     ++...|.+|++|+|.|+
T Consensus       123 aplh~A~~~~~~s~L~~Ll~~--~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a-----~~~K~~~~~~~~iH~aa  195 (929)
T KOG0510|consen  123 APLHLAADSGNYSCLKLLLDY--GADVNLEDENGFTPLHLAARKNKVEAKKELINKGA-----DPCKSDIDGNFPIHEAA  195 (929)
T ss_pred             CchhhccccchHHHHHHHHHh--cCCccccccCCCchhhHHHhcChHHHHHHHHhcCC-----CCCcccCcCCchHHHHH
Confidence            478999999999999999998  68999999999999999999999998899998864     47788999999999999


Q ss_pred             HcCCHHHHHHHHh-----cCcccccccCCCCc-eeEeccCCccc-chhhhhhcCCccC------------CccCCCCCCC
Q 041922           84 ALGNEAMCHCMAS-----KDRELISAADEGLA-NCSWSSGNLED-KEHHREKRGTYMG------------LSSNDDHGKS  144 (523)
Q Consensus        84 ~~g~~~iv~~Ll~-----~~~~~~~~~~~~~~-l~l~~~~~~~~-v~~l~~~~~~~~~------------l~~~d~~g~t  144 (523)
                      ++|..|+.+..+.     ++..++..++.+.+ +++++..++.+ ++.++++...+.+            ++..|++|+|
T Consensus       196 ~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~t  275 (929)
T KOG0510|consen  196 RSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCT  275 (929)
T ss_pred             HhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCc
Confidence            9999999999998     56667666666555 77777777766 4777766433332            2788999999


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHH----hhccCCCcchhhhh----HHHHHHHHHHhc------
Q 041922          145 SRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVA----VHNKDGNARDETAT----AAVQELKFMKKK------  210 (523)
Q Consensus       145 pLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~----~~~~~v~~Ll~~------  210 (523)
                      |||+|+++.+                     -.|++.+..    ...++.++..+.|.    ++.+.++.||+.      
T Consensus       276 pLH~a~r~G~---------------------~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rll  334 (929)
T KOG0510|consen  276 PLHYAARQGG---------------------PESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLL  334 (929)
T ss_pred             hHHHHHHcCC---------------------hhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccc
Confidence            9999985322                     223332221    22233344444554    456789999983      


Q ss_pred             ccccCCCChHHHHHHHcChHHHHHHHHhhCCCccc---ccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccc
Q 041922          211 DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIH---DLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHV  287 (523)
Q Consensus       211 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~---~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~  287 (523)
                      +..|-.|.||||.|+++||.++++.||++ |++.+   ..|.+|.||||.|++.|+..+|++|+.+|+       ++..+
T Consensus       335 ne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga-------~I~~~  406 (929)
T KOG0510|consen  335 NESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGA-------DIGVK  406 (929)
T ss_pred             ccccccCCCchhhhhhcCHHHHHHHHHhc-ChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCC-------ceeec
Confidence            67788899999999999999999999998 77766   569999999999999999999999999999       99999


Q ss_pred             cCCCCcHhHH
Q 041922          288 DIKGNSALHL  297 (523)
Q Consensus       288 d~~G~TpLH~  297 (523)
                      |+.|.+++|+
T Consensus       407 n~~g~SA~~~  416 (929)
T KOG0510|consen  407 NKKGKSAFDT  416 (929)
T ss_pred             cccccccccc
Confidence            9999999996

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.8e-32  Score=277.73  Aligned_cols=229  Identities=14%  Similarity=0.066  Sum_probs=190.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHH--cCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            5 CLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAA--AGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         5 ~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      +++.++..++.+.++.+++..       ....+.++||.++.  .++.++|+.|++.|.     ++|.+|.+|+||||+|
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~-------~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Ga-----dvn~~d~~G~TpLh~A   79 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAI-------EPSGNYHILHAYCGIKGLDERFVEELLHRGY-----SPNETDDDGNYPLHIA   79 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhcc-------CCCCCChHHHHHHHhcCCCHHHHHHHHHCcC-----CCCccCCCCCCHHHHH
Confidence            578889999999999999762       12235799998774  457799999999874     5899999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCccc---chhhhhhcCCccCCcc-CCCCCCCccccCCCCCCCCc
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLED---KEHHREKRGTYMGLSS-NDDHGKSSRDSRPDKDGDTF  157 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~---v~~l~~~~~~~~~l~~-~d~~g~tpLh~a~~~~~~~~  157 (523)
                      ++.|+.+++++|+++|++++..+..+.+ ++++...+...   +++|+++   +++++. .|.+|.||||.|..      
T Consensus        80 a~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~---Gadin~~~d~~g~tpL~aa~~------  150 (446)
T PHA02946         80 SKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQY---GAKINNSVDEEGCGPLLACTD------  150 (446)
T ss_pred             HHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc---CCCcccccCCCCCcHHHHHHC------
Confidence            9999999999999999999887777776 55555444332   4788887   899985 69999999995542      


Q ss_pred             cCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcCh--HH
Q 041922          158 SVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGV--TE  231 (523)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~--~~  231 (523)
                                                               ...++++.|++.    +.+|..|+||||+|+..++  .+
T Consensus       151 -----------------------------------------~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~  189 (446)
T PHA02946        151 -----------------------------------------PSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKAS  189 (446)
T ss_pred             -----------------------------------------CChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHH
Confidence                                                     123478888877    6778899999999987654  68


Q ss_pred             HHHHHHhhCCCcccccccCCCcHHHHHHHcC--chhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCC
Q 041922          232 MVEKILDTIPVAIHDLDSEKKNLVLLAVENR--QTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEY  304 (523)
Q Consensus       232 ~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~--~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  304 (523)
                      ++++|++. |++++.+|.+|+||||+|+.++  +.+++++|++ |+       ++|.+|.+|+||||+|++.++.
T Consensus       190 ~v~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga-------din~~d~~G~TpLh~A~~~~~~  255 (446)
T PHA02946        190 TISWMMKL-GISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST-------DVNKQNKFGDSPLTLLIKTLSP  255 (446)
T ss_pred             HHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC-------CCCCCCCCCCCHHHHHHHhCCh
Confidence            99999997 9999999999999999999986  7899999985 77       9999999999999999998874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.98  E-value=4.2e-32  Score=285.61  Aligned_cols=253  Identities=10%  Similarity=0.066  Sum_probs=192.4

Q ss_pred             hHHHHHHH--cCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCC--HHHHHHHHHHhcccccccccccccCCChHH
Q 041922            4 NCLSKFAM--RGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQ--TNIVSELVEIMGENASNVLKIQNDRGDTAL   79 (523)
Q Consensus         4 ~~L~~Aa~--~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~--~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpL   79 (523)
                      .+||.|+.  .++.+.++.|++.  +.+++.+|..|.||||+|+..|+  .++|+.|++.|+     ++|.+|..|+|||
T Consensus       179 TpLH~A~~n~~~~~eIVklLLe~--GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GA-----DVN~kD~~G~TPL  251 (764)
T PHA02716        179 GILHAYLGNMYVDIDILEWLCNN--GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGG-----DMDMKCVNGMSPI  251 (764)
T ss_pred             cHHHHHHHhccCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC-----CCCCCCCCCCCHH
Confidence            36776653  3678899888887  78889999999999999999995  599999999874     5999999999999


Q ss_pred             hHH-------------------------------------HHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCC--c
Q 041922           80 HLA-------------------------------------AALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGN--L  119 (523)
Q Consensus        80 h~A-------------------------------------~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~--~  119 (523)
                      |.|                                     ++.|+.+++++|++.|++++..+..|.+ ++.++..+  +
T Consensus       252 h~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~  331 (764)
T PHA02716        252 MTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIS  331 (764)
T ss_pred             HHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCC
Confidence            975                                     4568889999999999999888777777 66554433  3


Q ss_pred             cc-chhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhh
Q 041922          120 ED-KEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT  198 (523)
Q Consensus       120 ~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (523)
                      .+ +++|+++   +++++.+|..|+||||.|+...... ..+                          +.     .....
T Consensus       332 ~eIVklLLe~---GADIN~kD~~G~TPLH~A~~~lav~-~~l--------------------------d~-----~~~~~  376 (764)
T PHA02716        332 TDIIKLLHEY---GNDLNEPDNIGNTVLHTYLSMLSVV-NIL--------------------------DP-----ETDND  376 (764)
T ss_pred             chHHHHHHHc---CCCCccCCCCCCCHHHHHHHhhhhh-ccc--------------------------cc-----ccccc
Confidence            33 5889987   8999999999999999764210000 000                          00     00011


Q ss_pred             HHHHHHHHHHhc----ccccCCCChHHHH----HHHcChHHHHHHHHhhC------------------------------
Q 041922          199 AAVQELKFMKKK----DQQSGRKATPILI----AAKMGVTEMVEKILDTI------------------------------  240 (523)
Q Consensus       199 ~~~~~v~~Ll~~----~~~~~~g~tpLh~----Aa~~g~~~~v~~Ll~~~------------------------------  240 (523)
                      ...+++++|+++    +.+|..|.||||.    |...++.+++++|++..                              
T Consensus       377 ~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~  456 (764)
T PHA02716        377 IRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAK  456 (764)
T ss_pred             ChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHh
Confidence            235688888877    5677788888883    22346677877776631                              


Q ss_pred             ------------------------------CCcccccccCCCcHHHHHHHcCchh-----HHHHHHhccccCCccccccc
Q 041922          241 ------------------------------PVAIHDLDSEKKNLVLLAVENRQTG-----IYKLLLDRKMLGESDLNIFE  285 (523)
Q Consensus       241 ------------------------------~~~~~~~d~~G~t~Lh~A~~~~~~~-----iv~~Ll~~~~~~~~~~~~in  285 (523)
                                                    +.+++..|..|+||||+|+.+|+.+     ++++|++.|+       ++|
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GA-------DIN  529 (764)
T PHA02716        457 YNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQY-------NIN  529 (764)
T ss_pred             cCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCC-------CCc
Confidence                                          1133556889999999999998874     4599999999       999


Q ss_pred             cccCCCCcHhHHHHHhCCCC
Q 041922          286 HVDIKGNSALHLAAKFGEYG  305 (523)
Q Consensus       286 ~~d~~G~TpLH~Aa~~~~~~  305 (523)
                      .+|++|+||||+|+++|+.+
T Consensus       530 ~~d~~G~TPLh~A~~~g~~~  549 (764)
T PHA02716        530 IPTKNGVTPLMLTMRNNRLS  549 (764)
T ss_pred             ccCCCCCCHHHHHHHcCCcc
Confidence            99999999999999999863

>PHA02791 ankyrin-like protein; Provisional

Probab=99.98  E-value=5.2e-32  Score=258.04  Aligned_cols=195  Identities=19%  Similarity=0.119  Sum_probs=168.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.+++.  +.+.+..  +|+||||+|+..|+.++++.|++.|.     +++.+|..|+||||+|+
T Consensus        32 TpLh~Aa~~g~~eiv~~Ll~~--ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Ga-----dvn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         32 SALYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGM-----DDSQFDDKGNTALYYAV  102 (284)
T ss_pred             cHHHHHHHcCCHHHHHHHHHC--cCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHH
Confidence            579999999999999999988  4455443  47999999999999999999998763     58999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCC-CccccCCCCCCCCccCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGK-SSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~-tpLh~a~~~~~~~~~~l~~  162 (523)
                      ..|+.+++++|+++|+++                                  +.++..|+ ||||.|+.           
T Consensus       103 ~~g~~eivk~Ll~~gadi----------------------------------n~~~~~g~~TpL~~Aa~-----------  137 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRL----------------------------------MFYGKTGWKTSFYHAVM-----------  137 (284)
T ss_pred             HcCCHHHHHHHHHCCCCc----------------------------------CccCCCCCcHHHHHHHH-----------
Confidence            999999999999988765                                  55666774 89998762           


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcc--ccc-CCCChHHHHHHHcChHHHHHHHHhh
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKD--QQS-GRKATPILIAAKMGVTEMVEKILDT  239 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~--~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~  239 (523)
                                                         .+..+++++|+++.  ..| ..|.||||+|++.|+.++++.|++.
T Consensus       138 -----------------------------------~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~  182 (284)
T PHA02791        138 -----------------------------------LNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY  182 (284)
T ss_pred             -----------------------------------cCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHC
Confidence                                               12255889998872  223 3589999999999999999999997


Q ss_pred             CCCcccccccCCCcH-HHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhH
Q 041922          240 IPVAIHDLDSEKKNL-VLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALH  296 (523)
Q Consensus       240 ~~~~~~~~d~~G~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH  296 (523)
                       |++++.+|..|.|| ||+|+.+|+.+++++|+++|+       ++|.+|.+| |||+
T Consensus       183 -gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga-------~in~~~~~~-~~l~  231 (284)
T PHA02791        183 -MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDI-------NIYSVNLEN-VLLD  231 (284)
T ss_pred             -CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCC-------CCccCcccC-ccCC
Confidence             89999999999987 999999999999999999999       999999955 7773

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.4e-32  Score=229.53  Aligned_cols=174  Identities=21%  Similarity=0.264  Sum_probs=159.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|..+.+..|+. .|+..+|..|..|+||||+||..|+.|+|+.|+.+-    ..++|..++.|.||||+|+
T Consensus        40 t~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~----~advna~tn~G~T~LHyAa  114 (226)
T KOG4412|consen   40 TPLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRS----GADVNATTNGGQTCLHYAA  114 (226)
T ss_pred             ceeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCC----CCCcceecCCCcceehhhh
Confidence            46899999999999988887 568888899999999999999999999999999872    2579999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+|+++|+++|+.+                                                              
T Consensus       115 gK~r~eIaqlLle~ga~i--------------------------------------------------------------  132 (226)
T KOG4412|consen  115 GKGRLEIAQLLLEKGALI--------------------------------------------------------------  132 (226)
T ss_pred             cCChhhHHHHHHhcCCCC--------------------------------------------------------------
Confidence            999999999999999765                                                              


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCc
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVA  243 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  243 (523)
                                                                     +.+|..|.||||.|+..|..+++++|+.. ++.
T Consensus       133 -----------------------------------------------~~kD~~~qtplHRAAavGklkvie~Li~~-~a~  164 (226)
T KOG4412|consen  133 -----------------------------------------------RIKDKQGQTPLHRAAAVGKLKVIEYLISQ-GAP  164 (226)
T ss_pred             -----------------------------------------------cccccccCchhHHHHhccchhhHHHHHhc-CCC
Confidence                                                           34566799999999999999999999997 899


Q ss_pred             ccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHH
Q 041922          244 IHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAK  300 (523)
Q Consensus       244 ~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~  300 (523)
                      +|..|+.|+||||.|...|+.++..+|+++|+       ++...|++| ||+-.|+-
T Consensus       165 ~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gA-------d~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  165 LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGA-------DTDREDKEG-TALRIACN  213 (226)
T ss_pred             CCcccccCccHHHHHHhccCchHHHHHHHhcc-------ceeeccccC-chHHHHHH
Confidence            99999999999999988899999999999999       999999999 99877763

>PHA02730 ankyrin-like protein; Provisional

Probab=99.98  E-value=6.3e-31  Score=271.53  Aligned_cols=316  Identities=9%  Similarity=0.005  Sum_probs=212.9

Q ss_pred             hHHHHHHHcC---CHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC--CHHHHHHHHHHhccc---------------
Q 041922            4 NCLSKFAMRG---QWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAG--QTNIVSELVEIMGEN---------------   63 (523)
Q Consensus         4 ~~L~~Aa~~g---~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g--~~~~v~~Ll~~~~~~---------------   63 (523)
                      .+||.|+..|   +.+.++.||+.  |++++.+|..|+||||+|+..|  +.|+|+.|++.|.+-               
T Consensus        43 TaLh~A~~~~~~~~~eivklLLs~--GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~  120 (672)
T PHA02730         43 NALHCYVSNKCDTDIKIVRLLLSR--GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYS  120 (672)
T ss_pred             cHHHHHHHcCCcCcHHHHHHHHhC--CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHH
Confidence            6799999997   48888888877  8899999999999999999977  799999999986410               


Q ss_pred             ------------------ccccccccc-----cCCChHHhHHHHcCCHHHHHHHHhcCccccc-------ccCCCCc--e
Q 041922           64 ------------------ASNVLKIQN-----DRGDTALHLAAALGNEAMCHCMASKDRELIS-------AADEGLA--N  111 (523)
Q Consensus        64 ------------------~~~~~~~~d-----~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~-------~~~~~~~--l  111 (523)
                                        ...+++..+     ..|.+|+++|...++.|+|++|+++|++++.       .++...+  +
T Consensus       121 y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l  200 (672)
T PHA02730        121 YMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSL  200 (672)
T ss_pred             HHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhH
Confidence                              001112221     2678899999999999999999999998852       2233332  2


Q ss_pred             eEec------cCCccc-chhhhhhcCCccCCccCCCCCCCcccc--CCCCC-CCCc-cCCCC------CCCC--------
Q 041922          112 CSWS------SGNLED-KEHHREKRGTYMGLSSNDDHGKSSRDS--RPDKD-GDTF-SVPET------PPVL--------  166 (523)
Q Consensus       112 ~l~~------~~~~~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~--a~~~~-~~~~-~~l~~------~~~~--------  166 (523)
                      +++.      .....+ +++|+++   |+++|.+|.+|+||||+  +.... .+.. .+++.      ..+.        
T Consensus       201 ~~~il~~~~~~~n~~eiv~lLIs~---GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~  277 (672)
T PHA02730        201 HYYILSHRESESLSKDVIKCLIDN---NVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGV  277 (672)
T ss_pred             HHHHHhhhhhhccCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhh
Confidence            2111      112223 4899998   99999999999999994  43211 1112 22330      0000        


Q ss_pred             ----Cccccchh-hhHHHHHHHHhhc----------------cCCCc-------------------c----hhhh---hH
Q 041922          167 ----ENDQIFQS-RNICLESAVAVHN----------------KDGNA-------------------R----DETA---TA  199 (523)
Q Consensus       167 ----~~~~~~~~-~~~~~~~~~~l~~----------------~~~~~-------------------~----~~~~---~~  199 (523)
                          ...+++.. +..-..++.++++                ..+..                   +    ...+   .-
T Consensus       278 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v  357 (672)
T PHA02730        278 LADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMV  357 (672)
T ss_pred             HHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcC
Confidence                00000000 0001111111111                00100                   0    1111   23


Q ss_pred             HHHHHHHHHhc----ccccCCCChHHHHHHHcCh----HHHHHHHHhhCCC--cccccccCCCcHHHH---HHHcC----
Q 041922          200 AVQELKFMKKK----DQQSGRKATPILIAAKMGV----TEMVEKILDTIPV--AIHDLDSEKKNLVLL---AVENR----  262 (523)
Q Consensus       200 ~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~--~~~~~d~~G~t~Lh~---A~~~~----  262 (523)
                      ..+++++|+++    +.. ..|.||||+|+..++    .+++++|+++ |+  +++.+|.+|+||||.   |...+    
T Consensus       358 ~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~-Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~  435 (672)
T PHA02730        358 SIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVEN-NGHMAINHVSNNGRLCMYGLILSRFNNCGYH  435 (672)
T ss_pred             cHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHc-CCCccccccccCCCchHhHHHHHHhcccccc
Confidence            47899999998    443 689999999999885    8999999997 55  799999999999994   43332    


Q ss_pred             -----chhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-cc
Q 041922          263 -----QTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FL  336 (523)
Q Consensus       263 -----~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~  336 (523)
                           ..+++++|+++|+       ++|.+|+.|+||||+|+..++.++                   ++.++..++ ++
T Consensus       436 ~~e~~~~~ivk~LIs~GA-------DINakD~~G~TPLh~Aa~~~~~ei-------------------ve~LI~~GAdIN  489 (672)
T PHA02730        436 CYETILIDVFDILSKYMD-------DIDMIDNENKTLLYYAVDVNNIQF-------------------ARRLLEYGASVN  489 (672)
T ss_pred             ccchhHHHHHHHHHhccc-------chhccCCCCCCHHHHHHHhCCHHH-------------------HHHHHHCCCCCC
Confidence                 2357999999999       999999999999999999988543                   233344444 68


Q ss_pred             ccCC-CCCChhHHhhhh
Q 041922          337 GYNN-KGKTPKEIFTKT  352 (523)
Q Consensus       337 ~~n~-~G~Tpl~la~~~  352 (523)
                      .+|+ .|.||++.|...
T Consensus       490 ~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        490 TTSRSIINTAIQKSSYR  506 (672)
T ss_pred             CCCCcCCcCHHHHHHHh
Confidence            8886 599999999763

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.5e-30  Score=270.21  Aligned_cols=265  Identities=12%  Similarity=0.088  Sum_probs=205.7

Q ss_pred             HHHHHHH---cCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHc--CCHHHHHHHHHHhcccccccccccccCCChHH
Q 041922            5 CLSKFAM---RGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAA--GQTNIVSELVEIMGENASNVLKIQNDRGDTAL   79 (523)
Q Consensus         5 ~L~~Aa~---~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpL   79 (523)
                      .||..+.   ..+.+.++.|++.  |.++|.. .+|.||||.++..  ++.++|+.|++.|+     ++|.++ .|.|||
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL~~--GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GA-----dvn~~~-~~~tpL   73 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLLRT--GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGA-----DVNYKG-YIETPL   73 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHHHc--CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCC-----CccCCC-CCCCcH
Confidence            4555544   4789999999988  7788877 6799999876654  37899999999874     478776 679999


Q ss_pred             hHHHHcC------CHHHHHHHHhcCcccccccCCCCc-eeEeccC---Cccc-chhhhhhcCCccCC-ccCCCCCCCccc
Q 041922           80 HLAAALG------NEAMCHCMASKDRELISAADEGLA-NCSWSSG---NLED-KEHHREKRGTYMGL-SSNDDHGKSSRD  147 (523)
Q Consensus        80 h~A~~~g------~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~---~~~~-v~~l~~~~~~~~~l-~~~d~~g~tpLh  147 (523)
                      |.|+.++      +.+++++|+++|++++..+..|.+ ++.+...   ++.+ +++|+++   |+++ +.+|..|+||||
T Consensus        74 ~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~---Gadin~~~d~~g~tpLh  150 (494)
T PHA02989         74 CAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK---GINVNDVKNSRGYNLLH  150 (494)
T ss_pred             HHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC---CCCcccccCCCCCCHHH
Confidence            9998754      578999999999999988877766 4433322   2333 4889988   9999 899999999999


Q ss_pred             cCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----cc-ccCCCChHHH
Q 041922          148 SRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQ-QSGRKATPIL  222 (523)
Q Consensus       148 ~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~-~~~~g~tpLh  222 (523)
                      .|+..                                            .....++++.|+++    +. .+..|.||||
T Consensus       151 ~a~~~--------------------------------------------~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~  186 (494)
T PHA02989        151 MYLES--------------------------------------------FSVKKDVIKILLSFGVNLFEKTSLYGLTPMN  186 (494)
T ss_pred             HHHHh--------------------------------------------ccCCHHHHHHHHHcCCCccccccccCCChHH
Confidence            76410                                            01225688888887    23 4567999999


Q ss_pred             HHHHcC----hHHHHHHHHhhCCCcccccccCCCcHHHHHHHcC------chhHHHHHHhccccCCccccccccccCCCC
Q 041922          223 IAAKMG----VTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENR------QTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       223 ~Aa~~g----~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~------~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                      +|+..+    +.+++++|+++ |++++..|..|.|+||.++..+      ..+++++|++ ++       ++|.+|.+|+
T Consensus       187 ~a~~~~~~~~~~~iv~~Ll~~-Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~a-------dvn~~d~~G~  257 (494)
T PHA02989        187 IYLRNDIDVISIKVIKYLIKK-GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YI-------KINKKDKKGF  257 (494)
T ss_pred             HHHhcccccccHHHHHHHHhC-CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CC-------CCCCCCCCCC
Confidence            988764    89999999997 8999999999999999877643      4677787665 57       8999999999


Q ss_pred             cHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          293 SALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       293 TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                      ||||+|+..++.++                   ++.++..++ ++.+|.+|+||+++|.+..
T Consensus       258 TpL~~Aa~~~~~~~-------------------v~~LL~~Gadin~~d~~G~TpL~~A~~~~  300 (494)
T PHA02989        258 NPLLISAKVDNYEA-------------------FNYLLKLGDDIYNVSKDGDTVLTYAIKHG  300 (494)
T ss_pred             CHHHHHHHhcCHHH-------------------HHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            99999999988554                   333344444 6889999999999998754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.6e-30  Score=274.06  Aligned_cols=313  Identities=9%  Similarity=-0.049  Sum_probs=219.6

Q ss_pred             hHHHHHHHc---CCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHH----HHHHHHHHhc---------------
Q 041922            4 NCLSKFAMR---GQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTN----IVSELVEIMG---------------   61 (523)
Q Consensus         4 ~~L~~Aa~~---g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~----~v~~Ll~~~~---------------   61 (523)
                      .+||.|+..   |+.+.++.||+.  +.+++..+..|.||||+|+..|+.+    +++.|++.+.               
T Consensus        34 t~Lh~a~~~~~~~~~~~v~~Ll~~--ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~  111 (661)
T PHA02917         34 NALHAYLFNEHCNNVEVVKLLLDS--GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKS  111 (661)
T ss_pred             cHHHHHHHhhhcCcHHHHHHHHHC--CCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHh
Confidence            578887555   889999999987  7788889999999999999888743    3445554311               


Q ss_pred             c-----------cccccccccccCCChHHhHHH--HcCCHHHHHHHHhcCcccccccCC---C-----------Cc-eeE
Q 041922           62 E-----------NASNVLKIQNDRGDTALHLAA--ALGNEAMCHCMASKDRELISAADE---G-----------LA-NCS  113 (523)
Q Consensus        62 ~-----------~~~~~~~~~d~~G~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~---~-----------~~-l~l  113 (523)
                      .           ...+++|.+|.+|+||||.|+  ..|+.+++++|+++|++++..+..   |           ++ +++
T Consensus       112 ~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~  191 (661)
T PHA02917        112 KNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHL  191 (661)
T ss_pred             hcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHH
Confidence            0           123568999999999999654  578999999999999999754432   1           23 444


Q ss_pred             eccC-----------Cccc-chhhhhhcCCccCCccCCCCCCCccccCCCCCCC---CccCCCCCCCCCc--------cc
Q 041922          114 WSSG-----------NLED-KEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGD---TFSVPETPPVLEN--------DQ  170 (523)
Q Consensus       114 ~~~~-----------~~~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~---~~~~l~~~~~~~~--------~~  170 (523)
                      +...           ++.+ +++|+++   |++++.+|.+|+||||+|+..+..   ...++..+.+...        +.
T Consensus       192 a~~~~~~~~~~~~~~~~~eiv~~Li~~---Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~~~~~~~  268 (661)
T PHA02917        192 YIISHLYSESDTRAYVRPEVVKCLINH---GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAYSYIDDLTCC  268 (661)
T ss_pred             HHhhcccccccccccCcHHHHHHHHHC---CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcccccccccCcccc
Confidence            4321           2233 5899988   999999999999999998875443   3333334443221        11


Q ss_pred             cchhhhH------------HHHHHHHhhccCCCcc---------------h-----------hh-------hhH--HHHH
Q 041922          171 IFQSRNI------------CLESAVAVHNKDGNAR---------------D-----------ET-------ATA--AVQE  203 (523)
Q Consensus       171 ~~~~~~~------------~~~~~~~l~~~~~~~~---------------~-----------~~-------~~~--~~~~  203 (523)
                      .+..+..            ..++++.|++.+....               .           ..       ..+  ..++
T Consensus       269 ~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  348 (661)
T PHA02917        269 TRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPL  348 (661)
T ss_pred             cchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHH
Confidence            1111111            2344555555442210               0           00       011  2458


Q ss_pred             HHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcC-----------------
Q 041922          204 LKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENR-----------------  262 (523)
Q Consensus       204 v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~-----------------  262 (523)
                      ++.|+++    +.++..|.|+.    ...+.++++.||.+.|++++..|.+|+||||.|++++                 
T Consensus       349 v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~  424 (661)
T PHA02917        349 VECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCD  424 (661)
T ss_pred             HHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccch
Confidence            8999988    55667787754    4677889999998668887777888999999998543                 


Q ss_pred             ------chhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-c
Q 041922          263 ------QTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-F  335 (523)
Q Consensus       263 ------~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~  335 (523)
                            ..+++++|+++|+       ++|.+|..|+||||+|+..++.++                   ++.++..++ +
T Consensus       425 ~~~~~~~~~~v~~Ll~~GA-------dIN~kd~~G~TpLh~Aa~~~~~~~-------------------v~~Ll~~GAdi  478 (661)
T PHA02917        425 MSYACPILSTINICLPYLK-------DINMIDKRGETLLHKAVRYNKQSL-------------------VSLLLESGSDV  478 (661)
T ss_pred             hhhhhhhHHHHHHHHHCCC-------CCCCCCCCCcCHHHHHHHcCCHHH-------------------HHHHHHCcCCC
Confidence                  2567899999999       999999999999999999887443                   233344444 6


Q ss_pred             cccCCCCCChhHHhhh
Q 041922          336 LGYNNKGKTPKEIFTK  351 (523)
Q Consensus       336 ~~~n~~G~Tpl~la~~  351 (523)
                      +.+|..|+||+++|..
T Consensus       479 n~~d~~G~T~L~~A~~  494 (661)
T PHA02917        479 NIRSNNGYTCIAIAIN  494 (661)
T ss_pred             CCCCCCCCCHHHHHHH
Confidence            8999999999999985

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.4e-29  Score=263.78  Aligned_cols=265  Identities=15%  Similarity=0.069  Sum_probs=188.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCC--CccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            5 CLSKFAMRGQWDNFVQAYENNP--MSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         5 ~L~~Aa~~g~~~~v~~ll~~~~--~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      .|+.+....+.+.+.+.++.-.  +...+..+..+.||||+|+..|+.++|++|++.|.     +++.+|.+|.||||+|
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~ga-----dvn~~d~~g~TpLh~A   77 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGH-----NVNQPDHRDLTPLHII   77 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHH
Confidence            5788888888877877776521  11123345578899999999999999999999864     5899999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPE  161 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~  161 (523)
                      |..|+.++++.|++.+.+... ......++.+...++.++ +.|+..   +.+       +.......            
T Consensus        78 ~~~g~~~~v~~Ll~~~~~~~~-~~~~~~l~~a~~~~~~ei~~~Ll~~---~~~-------~~~~~~~~------------  134 (477)
T PHA02878         78 CKEPNKLGMKEMIRSINKCSV-FYTLVAIKDAFNNRNVEIFKIILTN---RYK-------NIQTIDLV------------  134 (477)
T ss_pred             HHCccHhHHHHHHHHHhcccc-ccchhhHHHHHHcCCHHHHHHHHhC---ccc-------CcccCcHH------------
Confidence            999999999999998654322 000001222222222222 333332   000       00000000            


Q ss_pred             CCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCC-CChHHHHHHHcChHHHHHHH
Q 041922          162 TPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGR-KATPILIAAKMGVTEMVEKI  236 (523)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~-g~tpLh~Aa~~g~~~~v~~L  236 (523)
                                    ..+.             .........++++.|+++    +..+.. |.||||+|+..|+.+++++|
T Consensus       135 --------------~~~~-------------~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        135 --------------YIDK-------------KSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             --------------HHhh-------------ccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence                          0000             000011224589999988    566667 99999999999999999999


Q ss_pred             HhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHh-CCCCCccCCcchhh
Q 041922          237 LDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKF-GEYGPWRIPGAALQ  315 (523)
Q Consensus       237 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~-~~~~~~~~~g~~l~  315 (523)
                      ++. |++++.+|..|+||||.|+..++.+++++|++.|+       ++|.+|..|+||||+|+.. ++.++         
T Consensus       188 l~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga-------~in~~d~~g~TpLh~A~~~~~~~~i---------  250 (477)
T PHA02878        188 LSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGA-------STDARDKCGNTPLHISVGYCKDYDI---------  250 (477)
T ss_pred             HHC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC-------CCCCCCCCCCCHHHHHHHhcCCHHH---------
Confidence            997 89999999999999999999999999999999999       9999999999999999976 44333         


Q ss_pred             hHHHhHHHHHHHhhCCccc-ccccCC-CCCChhHHhhh
Q 041922          316 MQWEIKWYKFVKESMPRYF-FLGYNN-KGKTPKEIFTK  351 (523)
Q Consensus       316 ~~~~~~~~~~v~~~~~~~~-~~~~n~-~G~Tpl~la~~  351 (523)
                                ++.++..++ ++.++. .|.||+|+|..
T Consensus       251 ----------v~~Ll~~gadvn~~~~~~g~TpLh~A~~  278 (477)
T PHA02878        251 ----------LKLLLEHGVDVNAKSYILGLTALHSSIK  278 (477)
T ss_pred             ----------HHHHHHcCCCCCccCCCCCCCHHHHHcc
Confidence                      233333343 466665 79999999943

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.5e-30  Score=269.08  Aligned_cols=242  Identities=14%  Similarity=0.087  Sum_probs=195.0

Q ss_pred             hHHHHHHHcC--CHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC------CHHHHHHHHHHhcccccccccccccCC
Q 041922            4 NCLSKFAMRG--QWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAG------QTNIVSELVEIMGENASNVLKIQNDRG   75 (523)
Q Consensus         4 ~~L~~Aa~~g--~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g------~~~~v~~Ll~~~~~~~~~~~~~~d~~G   75 (523)
                      ++|+.++..+  +.+.++.|++.  |+++|.++ .+.||||.|+.++      +.++++.|++.|+     ++|.+|.+|
T Consensus        37 t~l~~~~~~~~~~~~iv~~Ll~~--GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Ga-----din~~d~~g  108 (494)
T PHA02989         37 SILLLYLKRKDVKIKIVKLLIDN--GADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGA-----DINLKTFNG  108 (494)
T ss_pred             CHHHHHHhcCCCChHHHHHHHHc--CCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCC-----CCCCCCCCC
Confidence            4566665544  57888888887  77787765 5799999998764      5789999999874     599999999


Q ss_pred             ChHHhHHHHc---CCHHHHHHHHhcCccc-ccccCCCCc-eeEeccCC--ccc-chhhhhhcCCccCCcc-CCCCCCCcc
Q 041922           76 DTALHLAAAL---GNEAMCHCMASKDREL-ISAADEGLA-NCSWSSGN--LED-KEHHREKRGTYMGLSS-NDDHGKSSR  146 (523)
Q Consensus        76 ~TpLh~A~~~---g~~~iv~~Ll~~~~~~-~~~~~~~~~-l~l~~~~~--~~~-v~~l~~~~~~~~~l~~-~d~~g~tpL  146 (523)
                      .||||.|+..   |+.+++++|+++|+++ +..+..|.+ ++++....  +.+ +++|+++   |++++. .+..|.|||
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~---Gadi~~~~~~~g~tpL  185 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF---GVNLFEKTSLYGLTPM  185 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc---CCCccccccccCCChH
Confidence            9999998765   6899999999999999 555555555 55554433  333 5889988   899988 688999999


Q ss_pred             ccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHH
Q 041922          147 DSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPIL  222 (523)
Q Consensus       147 h~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh  222 (523)
                      |.|...                                          .......+++++|+++    +.++..|.||||
T Consensus       186 ~~a~~~------------------------------------------~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~  223 (494)
T PHA02989        186 NIYLRN------------------------------------------DIDVISIKVIKYLIKKGVNIETNNNGSESVLE  223 (494)
T ss_pred             HHHHhc------------------------------------------ccccccHHHHHHHHhCCCCccccCCccccHHH
Confidence            976521                                          0112236789999988    556677999999


Q ss_pred             HHHHcC------hHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhH
Q 041922          223 IAAKMG------VTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALH  296 (523)
Q Consensus       223 ~Aa~~g------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH  296 (523)
                      .++..+      ..+++++|++  +++++.+|.+|+||||+|+..|+.+++++|+++|+       ++|.+|.+|+||||
T Consensus       224 ~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Ga-------din~~d~~G~TpL~  294 (494)
T PHA02989        224 SFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGD-------DIYNVSKDGDTVLT  294 (494)
T ss_pred             HHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCC-------CccccCCCCCCHHH
Confidence            877643      5678887765  59999999999999999999999999999999999       99999999999999


Q ss_pred             HHHHhCCCCCc
Q 041922          297 LAAKFGEYGPW  307 (523)
Q Consensus       297 ~Aa~~~~~~~~  307 (523)
                      +|++.++.+++
T Consensus       295 ~A~~~~~~~iv  305 (494)
T PHA02989        295 YAIKHGNIDML  305 (494)
T ss_pred             HHHHcCCHHHH
Confidence            99999997654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=5.7e-30  Score=267.18  Aligned_cols=236  Identities=14%  Similarity=0.097  Sum_probs=189.4

Q ss_pred             HcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHc-----CCHHHHHHHHHHhcccccccccccccCCChHHhHHHHc
Q 041922           11 MRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAA-----GQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAAL   85 (523)
Q Consensus        11 ~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~   85 (523)
                      ..++.+.++.+++.  |.+++..|..|.||||.|+.+     ++.++++.|++.|+     ++|.+|.+|+||||+|+..
T Consensus        47 ~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Ga-----diN~~d~~G~TpLh~a~~~  119 (489)
T PHA02798         47 DSPSTDIVKLFINL--GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGA-----DINKKNSDGETPLYCLLSN  119 (489)
T ss_pred             CCCCHHHHHHHHHC--CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCC-----CCCCCCCCcCcHHHHHHHc
Confidence            34467888888887  778888899999999998864     67899999998764     5889999999999999987


Q ss_pred             C---CHHHHHHHHhcCcccccccCCCCc-eeEeccCCc---cc-chhhhhhcCCccCCccCC-CCCCCccccCCCCCCCC
Q 041922           86 G---NEAMCHCMASKDRELISAADEGLA-NCSWSSGNL---ED-KEHHREKRGTYMGLSSND-DHGKSSRDSRPDKDGDT  156 (523)
Q Consensus        86 g---~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~---~~-v~~l~~~~~~~~~l~~~d-~~g~tpLh~a~~~~~~~  156 (523)
                      +   +.+++++|+++|++++..+..+.+ ++++...++   .+ +++|+++   |++++.++ ..|.||||.+...    
T Consensus       120 ~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~---gadin~~~~~~~~t~Lh~~~~~----  192 (489)
T PHA02798        120 GYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK---GVDINTHNNKEKYDTLHCYFKY----  192 (489)
T ss_pred             CCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh---CCCcccccCcCCCcHHHHHHHh----
Confidence            5   689999999999999888877777 666666665   33 4888887   88888774 5788999855410    


Q ss_pred             ccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHH-------HHH
Q 041922          157 FSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPIL-------IAA  225 (523)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh-------~Aa  225 (523)
                                                            .......+++++|+++    +..+..|.++++       .+.
T Consensus       193 --------------------------------------~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~  234 (489)
T PHA02798        193 --------------------------------------NIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDN  234 (489)
T ss_pred             --------------------------------------ccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhc
Confidence                                                  0011235689999988    445667888876       345


Q ss_pred             HcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCC
Q 041922          226 KMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYG  305 (523)
Q Consensus       226 ~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~  305 (523)
                      ..++.+++++|+.  ++++|.+|..|+||||+|+.+|+.+++++|+++|+       ++|.+|.+|+||||+|+..++.+
T Consensus       235 ~~~~~~i~~~l~~--~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GA-------din~~d~~G~TpL~~A~~~~~~~  305 (489)
T PHA02798        235 KRFKKNILDFIFS--YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGG-------DINIITELGNTCLFTAFENESKF  305 (489)
T ss_pred             ccchHHHHHHHHh--cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCC-------cccccCCCCCcHHHHHHHcCcHH
Confidence            5677888988776  48999999999999999999999999999999999       99999999999999999999866


Q ss_pred             Cc
Q 041922          306 PW  307 (523)
Q Consensus       306 ~~  307 (523)
                      ++
T Consensus       306 iv  307 (489)
T PHA02798        306 IF  307 (489)
T ss_pred             HH
Confidence            54

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.9e-29  Score=257.14  Aligned_cols=205  Identities=15%  Similarity=0.105  Sum_probs=174.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEecc
Q 041922           37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSS  116 (523)
Q Consensus        37 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~  116 (523)
                      ++++||.|+..|+.+++++|++.|.     +++.++.+|.||||+|+..|+.+++++|++.|+++               
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~-----~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~---------------   61 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGI-----NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP---------------   61 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCC-----CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc---------------
Confidence            5799999999999999999999864     48889999999999999999999999999998654               


Q ss_pred             CCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhh
Q 041922          117 GNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDET  196 (523)
Q Consensus       117 ~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  196 (523)
                                         +..+.+|.||||.|+.                                             
T Consensus        62 -------------------~~~~~~~~t~L~~A~~---------------------------------------------   77 (413)
T PHA02875         62 -------------------DVKYPDIESELHDAVE---------------------------------------------   77 (413)
T ss_pred             -------------------cccCCCcccHHHHHHH---------------------------------------------
Confidence                               4556788999998873                                             


Q ss_pred             hhHHHHHHHHHHhc-----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHH
Q 041922          197 ATAAVQELKFMKKK-----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL  271 (523)
Q Consensus       197 ~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  271 (523)
                       .+..++++.|++.     +..+.+|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+
T Consensus        78 -~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll  155 (413)
T PHA02875         78 -EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLI  155 (413)
T ss_pred             -CCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence             1234588888876     33456799999999999999999999997 8999999999999999999999999999999


Q ss_pred             hccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCC-ChhHHh
Q 041922          272 DRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGK-TPKEIF  349 (523)
Q Consensus       272 ~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~-Tpl~la  349 (523)
                      ++|+       +++.+|..|+||||+|+..|+.+++                   +.++..++ ++..+.+|. ||+++|
T Consensus       156 ~~g~-------~~~~~d~~g~TpL~~A~~~g~~eiv-------------------~~Ll~~ga~~n~~~~~~~~t~l~~A  209 (413)
T PHA02875        156 DHKA-------CLDIEDCCGCTPLIIAMAKGDIAIC-------------------KMLLDSGANIDYFGKNGCVAALCYA  209 (413)
T ss_pred             hcCC-------CCCCCCCCCCCHHHHHHHcCCHHHH-------------------HHHHhCCCCCCcCCCCCCchHHHHH
Confidence            9999       9999999999999999999986543                   22333333 467777775 788988


Q ss_pred             hhhh
Q 041922          350 TKTH  353 (523)
Q Consensus       350 ~~~~  353 (523)
                      .+..
T Consensus       210 ~~~~  213 (413)
T PHA02875        210 IENN  213 (413)
T ss_pred             HHcC
Confidence            8754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=3.9e-29  Score=237.60  Aligned_cols=182  Identities=20%  Similarity=0.178  Sum_probs=159.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCC---C----ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCC
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNP---M----SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRG   75 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~---~----~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G   75 (523)
                      +.||..||++|+.+.|+.++++..   .    ..++....+|-+||..|+..||.++|+.|++++.     .+|......
T Consensus        43 ~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga-----~VN~tT~TN  117 (615)
T KOG0508|consen   43 GTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGA-----SVNDTTRTN  117 (615)
T ss_pred             CCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcC-----ccccccccC
Confidence            467899999999999999998431   1    3355667789999999999999999999999874     588888888


Q ss_pred             ChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCC
Q 041922           76 DTALHLAAALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKD  153 (523)
Q Consensus        76 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~  153 (523)
                      .|||--||..|+.+++|+|+++|+|+...+..|++ ++++...++.++ ++|++.   ++|+|.++..|+|+||.++   
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~---gADvn~ks~kGNTALH~ca---  191 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQ---GADVNAKSYKGNTALHDCA---  191 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHh---CCCcchhcccCchHHHhhh---
Confidence            89999999999999999999999999888888888 999999999887 889988   9999999999999999665   


Q ss_pred             CCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc---ccccCCCChHHHHHHHcChH
Q 041922          154 GDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK---DQQSGRKATPILIAAKMGVT  230 (523)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~---~~~~~~g~tpLh~Aa~~g~~  230 (523)
                                                                 ..++++++++|+++   -..|..|.|||..|+..|+.
T Consensus       192 -------------------------------------------EsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  192 -------------------------------------------ESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             -------------------------------------------hcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcch
Confidence                                                       23457799999998   44567799999999999999


Q ss_pred             HHHHHHHh
Q 041922          231 EMVEKILD  238 (523)
Q Consensus       231 ~~v~~Ll~  238 (523)
                      ++|+.|++
T Consensus       229 ~iVe~L~~  236 (615)
T KOG0508|consen  229 DIVERLLQ  236 (615)
T ss_pred             HHHHHHhc
Confidence            99999995

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=226.19  Aligned_cols=176  Identities=10%  Similarity=0.091  Sum_probs=148.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcC--CHHHHHHHHhcCcccccccCCCCce
Q 041922           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALG--NEAMCHCMASKDRELISAADEGLAN  111 (523)
Q Consensus        34 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~l  111 (523)
                      ...+.||||.|+..|+.+.|+.|++.        ++.+|..|.||||+|+..+  +.+++++|+++|+++          
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~--------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv----------   79 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF--------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV----------   79 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh--------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC----------
Confidence            45678999999999999999999874        5678899999999999854  899999999988766          


Q ss_pred             eEeccCCcccchhhhhhcCCccCCccCC-CCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCC
Q 041922          112 CSWSSGNLEDKEHHREKRGTYMGLSSND-DHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDG  190 (523)
Q Consensus       112 ~l~~~~~~~~v~~l~~~~~~~~~l~~~d-~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (523)
                                              +.++ ..|.||||.|+.                                       
T Consensus        80 ------------------------n~~~~~~g~TpLh~a~~---------------------------------------   96 (209)
T PHA02859         80 ------------------------NFKTRDNNLSALHHYLS---------------------------------------   96 (209)
T ss_pred             ------------------------CccCCCCCCCHHHHHHH---------------------------------------
Confidence                                    4554 478999997642                                       


Q ss_pred             CcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHH--cChHHHHHHHHhhCCCcccccccCCCcHHHH-HHHcCc
Q 041922          191 NARDETATAAVQELKFMKKK----DQQSGRKATPILIAAK--MGVTEMVEKILDTIPVAIHDLDSEKKNLVLL-AVENRQ  263 (523)
Q Consensus       191 ~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~-A~~~~~  263 (523)
                          ..+....++++.|+++    +.+|.+|.||||.|+.  .++.+++++|++. |++++.+|.+|.||||. |+..++
T Consensus        97 ----~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~-gadin~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         97 ----FNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS-GVSFLNKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             ----hCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCcccccCCCCcHHHHHHHhcCC
Confidence                0111235688888887    6788899999999876  4789999999997 89999999999999995 567889


Q ss_pred             hhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhC
Q 041922          264 TGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFG  302 (523)
Q Consensus       264 ~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~  302 (523)
                      .+++++|+++|+       +++.+|..|.||||+|...+
T Consensus       172 ~~iv~~Ll~~Ga-------di~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        172 KKIFDFLTSLGI-------DINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHHcCC-------CCCCCCCCCCCHHHHHhhhh
Confidence            999999999999       99999999999999998764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=2.1e-28  Score=262.12  Aligned_cols=325  Identities=18%  Similarity=0.191  Sum_probs=202.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcc---------------------
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE---------------------   62 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~---------------------   62 (523)
                      .++|.|+..|+.+.+..++..  +...+..+..|.||||.||+.+..|++++|++.|.+                     
T Consensus       244 ~~lh~a~~~g~~~i~~~l~~~--ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~  321 (1143)
T KOG4177|consen  244 TPLHVAAFMGHLDIVKLLLQH--GASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHE  321 (1143)
T ss_pred             cHHHHHHhccchhHHHHHHhc--ccccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchH
Confidence            478999999999999999988  677778888999999999999999999999988753                     


Q ss_pred             -------cccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcCCcc
Q 041922           63 -------NASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRGTYM  133 (523)
Q Consensus        63 -------~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~~~~  133 (523)
                             .....++..+..|.||||+++..++.++..+|...++.-.....++.+ ++++...+..++ ++++..   +.
T Consensus       322 ~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~---ga  398 (1143)
T KOG4177|consen  322 EIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEA---GA  398 (1143)
T ss_pred             HHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhc---cC
Confidence                   011223333444444444444444444444444333333332222222 444444444443 444443   56


Q ss_pred             CCccCCCCCCCccccCCC-CCCCCc-cCCCCCCCC----CccccchhhhHH-----------------------------
Q 041922          134 GLSSNDDHGKSSRDSRPD-KDGDTF-SVPETPPVL----ENDQIFQSRNIC-----------------------------  178 (523)
Q Consensus       134 ~l~~~d~~g~tpLh~a~~-~~~~~~-~~l~~~~~~----~~~~~~~~~~~~-----------------------------  178 (523)
                      +++.++..|.||||.+.. ...... -+++.+.+.    ..+..+.++...                             
T Consensus       399 ~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~L  478 (1143)
T KOG4177|consen  399 DPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPL  478 (1143)
T ss_pred             CcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcch
Confidence            667777777777775443 222222 223333222    122222222111                             


Q ss_pred             --------HHHHHHhhccC---C----Ccchhhh----hHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHH
Q 041922          179 --------LESAVAVHNKD---G----NARDETA----TAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEK  235 (523)
Q Consensus       179 --------~~~~~~l~~~~---~----~~~~~~~----~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~  235 (523)
                              ......+.+..   .    .+-...|    .....+.+.++++    +.++..|+||||.|+.+|+.++|++
T Consensus       479 hlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~Vkf  558 (1143)
T KOG4177|consen  479 HLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKF  558 (1143)
T ss_pred             hhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHH
Confidence                    11111111111   0    0001112    1223355555555    5666788999999999999999999


Q ss_pred             HHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhh
Q 041922          236 ILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQ  315 (523)
Q Consensus       236 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~  315 (523)
                      ||++ |++++.+|+.|+||||.|+..|+.+|+.+|+++|+       ++|..|.+|.||||+|++.|+.+.+..      
T Consensus       559 LLe~-gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA-------~vna~d~~g~TpL~iA~~lg~~~~~k~------  624 (1143)
T KOG4177|consen  559 LLEH-GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGA-------SVNAADLDGFTPLHIAVRLGYLSVVKL------  624 (1143)
T ss_pred             hhhC-CccccccCCCCCChhhHHHHcChHHHHHHHHHcCC-------CCCcccccCcchhHHHHHhcccchhhH------
Confidence            9997 89999999999999999999999999999999999       999999999999999999999776411      


Q ss_pred             hHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhhh
Q 041922          316 MQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHKE  355 (523)
Q Consensus       316 ~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~~  355 (523)
                              ..+....+... ....|..|.||.++..+....
T Consensus       625 --------l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~~~  657 (1143)
T KOG4177|consen  625 --------LKVVTATPAATDPVKENRKGAVPEDVAEELDTD  657 (1143)
T ss_pred             --------HHhccCccccccchhhhhcccChhhHHHHhhhh
Confidence                    01111122111 566788899999998876544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=5.3e-29  Score=266.62  Aligned_cols=287  Identities=16%  Similarity=0.109  Sum_probs=180.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      +++|.++.+|+.+....+...  +......+..|.||+|.|+..|..++++.++..+.     +++.++..|.||||.|+
T Consensus       343 t~lHlaa~~~~~~~~~~l~~~--~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga-----~~~~~gk~gvTplh~aa  415 (1143)
T KOG4177|consen  343 TPLHLAAKEGQVEVAGALLEH--GAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGA-----DPNSAGKNGVTPLHVAA  415 (1143)
T ss_pred             ccccHhhhhhhHHHHHHhhcc--ccccCcccccCCcchhhhcccCchhHHHhhhhccC-----CcccCCCCCcceeeehh
Confidence            456666666666644333333  22233445566666666666666666666666543     26666666666666666


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCC-cccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCc-c-
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGN-LEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTF-S-  158 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~-~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~-~-  158 (523)
                      ..++.++++.+++.|++.+..+..|.+ ++.+...+ ..++ ..++.   .+.++|..-..|.||||.|..+..... . 
T Consensus       416 ~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~---~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~l  492 (1143)
T KOG4177|consen  416 HYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQ---YGADPNAVSKQGFTPLHLAAQEGHTEVVQL  492 (1143)
T ss_pred             hccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhh---cCCCcchhccccCcchhhhhccCCchHHHH
Confidence            666666666666666666666666644 44444444 3333 22222   266667777777777776554333222 1 


Q ss_pred             CCCCCCCC----Cccccchhh-------hHHHHHHHH-----hhccCCCcc--hhhhhHHHHHHHHHHhc----ccccCC
Q 041922          159 VPETPPVL----ENDQIFQSR-------NICLESAVA-----VHNKDGNAR--DETATAAVQELKFMKKK----DQQSGR  216 (523)
Q Consensus       159 ~l~~~~~~----~~~~~~~~~-------~~~~~~~~~-----l~~~~~~~~--~~~~~~~~~~v~~Ll~~----~~~~~~  216 (523)
                      +++.....    ...-.+.+.       ..+...++.     +....+..+  .+.|.+.+.+|++|+++    +.+++.
T Consensus       493 lle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~  572 (1143)
T KOG4177|consen  493 LLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKL  572 (1143)
T ss_pred             hhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCC
Confidence            12221111    001111111       111111111     111111111  56666778899999999    778899


Q ss_pred             CChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhH
Q 041922          217 KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALH  296 (523)
Q Consensus       217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH  296 (523)
                      |+||||.||..|+.++++.|+++ |+++|..|.+|.||||.|+..|+.+++++|+..++...  ..+....+..|+||.-
T Consensus       573 G~TPLH~Aa~~G~~~i~~LLlk~-GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~--~~~~~~e~~~g~~p~~  649 (1143)
T KOG4177|consen  573 GYTPLHQAAQQGHNDIAELLLKH-GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPA--ATDPVKENRKGAVPED  649 (1143)
T ss_pred             CCChhhHHHHcChHHHHHHHHHc-CCCCCcccccCcchhHHHHHhcccchhhHHHhccCccc--cccchhhhhcccChhh
Confidence            99999999999999999999997 99999999999999999999999999999999998320  1127777889999998


Q ss_pred             HHHHhCC
Q 041922          297 LAAKFGE  303 (523)
Q Consensus       297 ~Aa~~~~  303 (523)
                      .+-....
T Consensus       650 v~e~~~~  656 (1143)
T KOG4177|consen  650 VAEELDT  656 (1143)
T ss_pred             HHHHhhh
Confidence            8776544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=4e-28  Score=253.28  Aligned_cols=271  Identities=10%  Similarity=0.048  Sum_probs=210.7

Q ss_pred             CCchHHHHHHHcCC---HHHHHHHHHcCCCccccccCCCCCcHHHHHHHc--CCHHHHHHHHHHhcccccccccccccCC
Q 041922            1 MEVNCLSKFAMRGQ---WDNFVQAYENNPMSREAKLTRSGDTALHIAAAA--GQTNIVSELVEIMGENASNVLKIQNDRG   75 (523)
Q Consensus         1 ~~~~~L~~Aa~~g~---~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~~~d~~G   75 (523)
                      |+-..||..+...+   .+.|+.++...   +.+.. ..|.|+++.+...  ++.++|+.|++.|+     ++|.+|..|
T Consensus         1 ~~~~~l~~y~~~~~~~~~~~v~~ll~~~---~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Ga-----dvn~~d~~g   71 (489)
T PHA02798          1 MDIDNLYNYITFSDNVKLSTVKLLIKSC---NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGA-----NVNGLDNEY   71 (489)
T ss_pred             CchhhhHHHeeecCcccHHHHHHHHhcC---Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCC-----CCCCCCCCC
Confidence            56677888766554   56888888652   22332 4577888755544  58999999999874     599999999


Q ss_pred             ChHHhHHHHc-----CCHHHHHHHHhcCcccccccCCCCc-eeEeccCCc---cc-chhhhhhcCCccCCccCCCCCCCc
Q 041922           76 DTALHLAAAL-----GNEAMCHCMASKDRELISAADEGLA-NCSWSSGNL---ED-KEHHREKRGTYMGLSSNDDHGKSS  145 (523)
Q Consensus        76 ~TpLh~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~---~~-v~~l~~~~~~~~~l~~~d~~g~tp  145 (523)
                      .||||.|+.+     ++.+++++|+++|++++..+..|.+ ++.+...+.   .+ +++|+++   |++++.+|.+|.||
T Consensus        72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~---Gadvn~~d~~g~tp  148 (489)
T PHA02798         72 STPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIEN---GADTTLLDKDGFTM  148 (489)
T ss_pred             CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc---CCCccccCCCCCcH
Confidence            9999999864     6799999999999999988887777 665555442   23 4888887   99999999999999


Q ss_pred             cccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccc-cCCCChH
Q 041922          146 RDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQ-SGRKATP  220 (523)
Q Consensus       146 Lh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~-~~~g~tp  220 (523)
                      ||.|+.                                           .++....++++.|+++    +.. +..|.||
T Consensus       149 L~~a~~-------------------------------------------~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~  185 (489)
T PHA02798        149 LQVYLQ-------------------------------------------SNHHIDIEIIKLLLEKGVDINTHNNKEKYDT  185 (489)
T ss_pred             HHHHHH-------------------------------------------cCCcchHHHHHHHHHhCCCcccccCcCCCcH
Confidence            998762                                           1222236689999987    233 3578999


Q ss_pred             HHHHHHc----ChHHHHHHHHhhCCCcccccccCCCcHHH-------HHHHcCchhHHHHHHhccccCCccccccccccC
Q 041922          221 ILIAAKM----GVTEMVEKILDTIPVAIHDLDSEKKNLVL-------LAVENRQTGIYKLLLDRKMLGESDLNIFEHVDI  289 (523)
Q Consensus       221 Lh~Aa~~----g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh-------~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~  289 (523)
                      ||.++..    ++.+++++|+++ |++++..|..|+++++       .+...++.+++++|++ ++       ++|.+|.
T Consensus       186 Lh~~~~~~~~~~~~~ivk~Li~~-Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~-------dvN~~d~  256 (489)
T PHA02798        186 LHCYFKYNIDRIDADILKLFVDN-GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YI-------DINQVDE  256 (489)
T ss_pred             HHHHHHhccccCCHHHHHHHHHC-CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cC-------CCCCcCc
Confidence            9998765    489999999997 8999999999999987       2445567888888776 46       9999999


Q ss_pred             CCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhh
Q 041922          290 KGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHK  354 (523)
Q Consensus       290 ~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~  354 (523)
                      .|+||||+|+..++.++                   ++.++..++ ++.+|.+|+||+++|.+...
T Consensus       257 ~G~TPL~~A~~~~~~~~-------------------v~~LL~~GAdin~~d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        257 LGFNPLYYSVSHNNRKI-------------------FEYLLQLGGDINIITELGNTCLFTAFENES  303 (489)
T ss_pred             CCccHHHHHHHcCcHHH-------------------HHHHHHcCCcccccCCCCCcHHHHHHHcCc
Confidence            99999999999998554                   333444444 69999999999999987643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=245.07  Aligned_cols=312  Identities=12%  Similarity=0.045  Sum_probs=194.0

Q ss_pred             HHHHHHHcCCCccccccCCCCCcHHHHHHHcC---CHHHHHHHHHHhcccccccccccccCCChHHhHHHHcC--CHHHH
Q 041922           17 NFVQAYENNPMSREAKLTRSGDTALHIAAAAG---QTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALG--NEAMC   91 (523)
Q Consensus        17 ~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g--~~~iv   91 (523)
                      .++..++...+.+ ..+|.+|+||||+|+..|   +.|+|+.|++.|+     +++.+|.+|+||||+|+..+  +.|++
T Consensus        22 ~~~~~~~~~~~in-~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GA-----din~kD~~G~TPLh~Aa~~~~~~~eIv   95 (672)
T PHA02730         22 KIKLEIETCHNLS-KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGV-----ERLCRNNEGLTPLGVYSKRKYVKSQIV   95 (672)
T ss_pred             HHHHHHHHhcchh-hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCC-----CCcccCCCCCChHHHHHHcCCCcHHHH
Confidence            4445555532332 377889999999999997   5999999999874     59999999999999999977  79999


Q ss_pred             HHHHhcCccc--ccccCCCCc-eeEeccCCccc---chhhhhhcCCccCCccCCC-----CCCCccccCCCCCCC-Cc-c
Q 041922           92 HCMASKDREL--ISAADEGLA-NCSWSSGNLED---KEHHREKRGTYMGLSSNDD-----HGKSSRDSRPDKDGD-TF-S  158 (523)
Q Consensus        92 ~~Ll~~~~~~--~~~~~~~~~-l~l~~~~~~~~---v~~l~~~~~~~~~l~~~d~-----~g~tpLh~a~~~~~~-~~-~  158 (523)
                      ++|++.|++.  ...++.+.. ++.+.++.+.+   +++|+..  .+.+++...+     .|.+|++.+...... .+ .
T Consensus        96 ~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~--~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvkl  173 (672)
T PHA02730         96 HLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVD--KRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLW  173 (672)
T ss_pred             HHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHh--cCCChhhhhhhhccccchhhhhHhcCCCchHHHHH
Confidence            9999996644  555655544 66666644443   4788853  2556554432     789999977753222 22 3


Q ss_pred             CCCCCCCCC-c------cccch--------------hhhHHHHHHHHhhc-------cCCCcchhhhh--HH----HHHH
Q 041922          159 VPETPPVLE-N------DQIFQ--------------SRNICLESAVAVHN-------KDGNARDETAT--AA----VQEL  204 (523)
Q Consensus       159 ~l~~~~~~~-~------~~~~~--------------~~~~~~~~~~~l~~-------~~~~~~~~~~~--~~----~~~v  204 (523)
                      +++.+++.. .      -+.|.              .+..+.+.++.|+.       ++..+.++.|.  ..    .|++
T Consensus       174 Li~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv  253 (672)
T PHA02730        174 LLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIV  253 (672)
T ss_pred             HHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHH
Confidence            456655541 0      01110              12233444444432       22334455542  22    5666


Q ss_pred             HHHHh--------------------------------c----cc--------------------ccCCCCh---------
Q 041922          205 KFMKK--------------------------------K----DQ--------------------QSGRKAT---------  219 (523)
Q Consensus       205 ~~Ll~--------------------------------~----~~--------------------~~~~g~t---------  219 (523)
                      ++|++                                +    ..                    .+..|.+         
T Consensus       254 ~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~  333 (672)
T PHA02730        254 KLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILK  333 (672)
T ss_pred             HHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHH
Confidence            66666                                1    00                    2233433         


Q ss_pred             ------------HHHHHHHcC---hHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCc----hhHHHHHHhccccCCcc
Q 041922          220 ------------PILIAAKMG---VTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQ----TGIYKLLLDRKMLGESD  280 (523)
Q Consensus       220 ------------pLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~----~~iv~~Ll~~~~~~~~~  280 (523)
                                  .||.-...|   +.+++++|+++ |++++.. ..|+||||+|+..++    .+++++|+++|+..   
T Consensus       334 ~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~-GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~---  408 (672)
T PHA02730        334 RFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN-GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM---  408 (672)
T ss_pred             hhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC-CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc---
Confidence                        455555544   46777777776 6777764 677777777777664    67777777777521   


Q ss_pred             ccccccccCCCCcHhHH--HHH-hCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          281 LNIFEHVDIKGNSALHL--AAK-FGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       281 ~~~in~~d~~G~TpLH~--Aa~-~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                        ++|.+|.+|.||||.  ++. .+.. .     .    ..+....+.++.+++.++ ++.+|+.|+||+++|....
T Consensus       409 --dIN~kd~~G~T~Lh~~i~a~~~n~~-~-----~----~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~  473 (672)
T PHA02730        409 --AINHVSNNGRLCMYGLILSRFNNCG-Y-----H----CYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVN  473 (672)
T ss_pred             --cccccccCCCchHhHHHHHHhcccc-c-----c----ccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhC
Confidence              477777777777773  222 2110 0     0    000001123566677776 8999999999999998754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.2e-27  Score=251.81  Aligned_cols=283  Identities=12%  Similarity=0.011  Sum_probs=206.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHHHhccccccccccccc---CC----
Q 041922            5 CLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAA--AAGQTNIVSELVEIMGENASNVLKIQND---RG----   75 (523)
Q Consensus         5 ~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~~d~---~G----   75 (523)
                      .++.|+..|+.+.++.|++.  +++++..|.+|.||||.|+  ..|+.+++++|++.|+     +++.+|.   .|    
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~--Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga-----~vn~~d~~~~~g~~~~  178 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEH--GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGC-----SVLYEDEDDEYGYAYD  178 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHc--CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCC-----Cccccccccccccccc
Confidence            45678888999999999988  8889999999999999654  5789999999999875     3554443   33    


Q ss_pred             -------ChHHhHHHH-----------cCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCccc---chhhhhhcCCcc
Q 041922           76 -------DTALHLAAA-----------LGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLED---KEHHREKRGTYM  133 (523)
Q Consensus        76 -------~TpLh~A~~-----------~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~---v~~l~~~~~~~~  133 (523)
                             .||||+|+.           .++.+++++|+++|++++..+..|.+ ++++...++.+   +++|++    ++
T Consensus       179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~----g~  254 (661)
T PHA02917        179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK----GI  254 (661)
T ss_pred             cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh----CC
Confidence                   599999986           46899999999999999999888888 88888888753   477754    45


Q ss_pred             CC----ccCCCCCCCccccCCC-------CCCCC----ccCCCCCCCCCc---------cc--------------cchhh
Q 041922          134 GL----SSNDDHGKSSRDSRPD-------KDGDT----FSVPETPPVLEN---------DQ--------------IFQSR  175 (523)
Q Consensus       134 ~l----~~~d~~g~tpLh~a~~-------~~~~~----~~~l~~~~~~~~---------~~--------------~~~~~  175 (523)
                      +.    +..|..|.+|+|.|+.       .....    -.+++.+.+...         ..              ...+.
T Consensus       255 d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (661)
T PHA02917        255 DNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHI  334 (661)
T ss_pred             cccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHH
Confidence            44    3577788988887662       11111    133455543210         00              00000


Q ss_pred             hH--------HHHHHHHhhccCCC-------cchhhhhHHHHHHHHHHhc-----ccccCCCChHHHHHHHcC-------
Q 041922          176 NI--------CLESAVAVHNKDGN-------ARDETATAAVQELKFMKKK-----DQQSGRKATPILIAAKMG-------  228 (523)
Q Consensus       176 ~~--------~~~~~~~l~~~~~~-------~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g-------  228 (523)
                      ..        -...++.|++.+.+       +..+......++++.|+.+     +..+.+|.||||.|++.+       
T Consensus       335 l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~  414 (661)
T PHA02917        335 LIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFY  414 (661)
T ss_pred             HHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhh
Confidence            00        12244555544332       1222222345688888864     445567999999997543       


Q ss_pred             ----------------hHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCC
Q 041922          229 ----------------VTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       229 ----------------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                                      ..++++.|+++ |++++.+|..|+||||+|+..++.+++++|+++|+       ++|.+|..|+
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~-GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GA-------din~~d~~G~  486 (661)
T PHA02917        415 TYTYKKGLCDMSYACPILSTINICLPY-LKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGS-------DVNIRSNNGY  486 (661)
T ss_pred             hhhhhhccchhhhhhhhHHHHHHHHHC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcC-------CCCCCCCCCC
Confidence                            35678999997 99999999999999999999999999999999999       9999999999


Q ss_pred             cHhHHHHH-hCCCCC
Q 041922          293 SALHLAAK-FGEYGP  306 (523)
Q Consensus       293 TpLH~Aa~-~~~~~~  306 (523)
                      ||||+|+. .++.++
T Consensus       487 T~L~~A~~~~~~~~i  501 (661)
T PHA02917        487 TCIAIAINESRNIEL  501 (661)
T ss_pred             CHHHHHHHhCCCHHH
Confidence            99999996 455443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.6e-27  Score=242.20  Aligned_cols=304  Identities=9%  Similarity=-0.053  Sum_probs=193.7

Q ss_pred             HHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHH-cCCHHHHHHHHHHhcccc----------------------
Q 041922            8 KFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAA-AGQTNIVSELVEIMGENA----------------------   64 (523)
Q Consensus         8 ~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~----------------------   64 (523)
                      .|...|+.|.++.|+.+  |+++|..+..|.||||+|+. .|+.|++++|++.|++-+                      
T Consensus        78 ~~s~n~~lElvk~LI~~--GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~  155 (631)
T PHA02792         78 LCSDNIDIELLKLLISK--GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNW  155 (631)
T ss_pred             HHHhcccHHHHHHHHHc--CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccch
Confidence            35677888888888887  78888888888899999865 589999999998886310                      


Q ss_pred             ---------cccccccccCCChHHhHHHHcC-------CHHHHHHHHhcCcccccccCCCCc-eeEeccCCc--cc-chh
Q 041922           65 ---------SNVLKIQNDRGDTALHLAAALG-------NEAMCHCMASKDRELISAADEGLA-NCSWSSGNL--ED-KEH  124 (523)
Q Consensus        65 ---------~~~~~~~d~~G~TpLh~A~~~g-------~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~--~~-v~~  124 (523)
                               .-.+|..|..|.||||+|+.++       +.+++++|+++|++++..+..|.+ ++.++...+  .+ +++
T Consensus       156 ~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~  235 (631)
T PHA02792        156 DDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDA  235 (631)
T ss_pred             hhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHH
Confidence                     0135677788889999998888       788899998888887666665555 555544442  22 245


Q ss_pred             hhhhcCCccCCccCCCCCCCccc------cCCCCCCCCc----cCCCCCC--CCCccccchhhh--------HHHHHHHH
Q 041922          125 HREKRGTYMGLSSNDDHGKSSRD------SRPDKDGDTF----SVPETPP--VLENDQIFQSRN--------ICLESAVA  184 (523)
Q Consensus       125 l~~~~~~~~~l~~~d~~g~tpLh------~a~~~~~~~~----~~l~~~~--~~~~~~~~~~~~--------~~~~~~~~  184 (523)
                      |+......       .+-+..|+      +.........    .+++...  +....-.+.++.        .....++.
T Consensus       236 L~~~~~~~-------~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~  308 (631)
T PHA02792        236 LFDSNYSG-------NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQD  308 (631)
T ss_pred             HHhccccc-------cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHH
Confidence            54420000       00011111      0000000000    0111100  000000000000        00011111


Q ss_pred             hhccCCCcchhhhhHHHHHHHHHHhccccc--CCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCC--CcHHHHHHH
Q 041922          185 VHNKDGNARDETATAAVQELKFMKKKDQQS--GRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEK--KNLVLLAVE  260 (523)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G--~t~Lh~A~~  260 (523)
                      ++..-    .....-..+++++|+++....  .....++|.|+..|+.+++++|+++ |++++.+|.+|  .||||.|..
T Consensus       309 ~l~~Y----l~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~  383 (631)
T PHA02792        309 LLSEY----VSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLS  383 (631)
T ss_pred             HHHHH----HhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHH
Confidence            11100    000112466899999884322  2367789999999999999999997 99999999875  699999887


Q ss_pred             cCch---hHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-cc
Q 041922          261 NRQT---GIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FL  336 (523)
Q Consensus       261 ~~~~---~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~  336 (523)
                      ....   +++++|+++|+       ++|.+|..|+||||+|+..++.+++                   +.++..++ ++
T Consensus       384 n~~~~v~~IlklLIs~GA-------DIN~kD~~G~TPLh~Aa~~~n~eiv-------------------elLLs~GADIN  437 (631)
T PHA02792        384 IHESDVLSILKLCKPYID-------DINKIDKHGRSILYYCIESHSVSLV-------------------EWLIDNGADIN  437 (631)
T ss_pred             hccHhHHHHHHHHHhcCC-------ccccccccCcchHHHHHHcCCHHHH-------------------HHHHHCCCCCC
Confidence            7664   46889999999       9999999999999999998885432                   22333344 68


Q ss_pred             ccCCCCCChhHHhhh
Q 041922          337 GYNNKGKTPKEIFTK  351 (523)
Q Consensus       337 ~~n~~G~Tpl~la~~  351 (523)
                      .+|+.|+||+++|..
T Consensus       438 ~kD~~G~TpL~~A~~  452 (631)
T PHA02792        438 ITTKYGSTCIGICVI  452 (631)
T ss_pred             CcCCCCCCHHHHHHH
Confidence            999999999999975

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.9e-27  Score=226.22  Aligned_cols=213  Identities=18%  Similarity=0.202  Sum_probs=157.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc---cccccCCCCCcHHHHHHHcCCHHHHHHHHHHhccc----ccccccccccCCCh
Q 041922            5 CLSKFAMRGQWDNFVQAYENNPMS---REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGEN----ASNVLKIQNDRGDT   77 (523)
Q Consensus         5 ~L~~Aa~~g~~~~v~~ll~~~~~~---~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~----~~~~~~~~d~~G~T   77 (523)
                      ..+.|++.|+...+..++.+....   ..-..+.+|.|||-+||++||.++|++|+++..-.    ...-.+-.+..|-+
T Consensus         7 ~~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegap   86 (615)
T KOG0508|consen    7 VVINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAP   86 (615)
T ss_pred             HHHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCc
Confidence            345899999999999998874321   12234678899999999999999999999965411    11224445678899


Q ss_pred             HHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCc
Q 041922           78 ALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTF  157 (523)
Q Consensus        78 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~  157 (523)
                      ||-.|+..||.++||.|+++|+++|.                                  ......|||-.||       
T Consensus        87 pLWaAsaAGHl~vVk~L~~~ga~VN~----------------------------------tT~TNStPLraAC-------  125 (615)
T KOG0508|consen   87 PLWAASAAGHLEVVKLLLRRGASVND----------------------------------TTRTNSTPLRAAC-------  125 (615)
T ss_pred             hhhHHhccCcHHHHHHHHHhcCcccc----------------------------------ccccCCccHHHHH-------
Confidence            99999999999999999999987743                                  3334457777666       


Q ss_pred             cCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHH
Q 041922          158 SVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMV  233 (523)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v  233 (523)
                                                          ..+|   ++++++|+++    +..|+.|.|.||+||..||.+++
T Consensus       126 ------------------------------------fDG~---leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen  126 ------------------------------------FDGH---LEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             ------------------------------------hcch---hHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHH
Confidence                                                1222   4477777776    45567788888888888888888


Q ss_pred             HHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          234 EKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       234 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      ++|++. |+|+|.++.+|+|+||.++++|+.+++++|+++|+       .+ .+|..|.|||-.|+..|+.++
T Consensus       167 qyLle~-gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga-------~i-~~d~~GmtPL~~Aa~tG~~~i  230 (615)
T KOG0508|consen  167 QYLLEQ-GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA-------KI-DVDGHGMTPLLLAAVTGHTDI  230 (615)
T ss_pred             HHHHHh-CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc-------ee-eecCCCCchHHHHhhhcchHH
Confidence            888876 78888888888888888888888888888888876       33 355668888888887777554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.93  E-value=3.6e-26  Score=226.89  Aligned_cols=174  Identities=24%  Similarity=0.291  Sum_probs=157.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccC-CCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      ..||.||.+++++.++.++++  +.++|... .-+.||||+|+++|+..+|+.|+++|+     +++.+|.+|.||||+|
T Consensus        80 tlLHWAAiNNrl~v~r~li~~--gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGA-----dpt~~D~~G~~~lHla  152 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISH--GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGA-----DPTLKDKQGLTPLHLA  152 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHc--CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCC-----CCceecCCCCcHHHHH
Confidence            468999999999999999999  67778777 678899999999999999999999874     5999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      ++.|+.-++-+|+.+++++                                                             
T Consensus       153 ~~~~~~~~vayll~~~~d~-------------------------------------------------------------  171 (600)
T KOG0509|consen  153 AQFGHTALVAYLLSKGADI-------------------------------------------------------------  171 (600)
T ss_pred             HHhCchHHHHHHHHhcccC-------------------------------------------------------------
Confidence            9999999999999998655                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      |.+|.+|+||||+|+.+|+...++.||+- ++
T Consensus       172 ------------------------------------------------d~~D~~grTpLmwAaykg~~~~v~~LL~f-~a  202 (600)
T KOG0509|consen  172 ------------------------------------------------DLRDNNGRTPLMWAAYKGFALFVRRLLKF-GA  202 (600)
T ss_pred             ------------------------------------------------CCcCCCCCCHHHHHHHhcccHHHHHHHHh-cc
Confidence                                                            34566799999999999999889999986 88


Q ss_pred             cccccc-cCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHh
Q 041922          243 AIHDLD-SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKF  301 (523)
Q Consensus       243 ~~~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~  301 (523)
                      .+...| .+|.||||+|+..|+.+++++|++.|+       +.+.+|.+|.||+.+|.+.
T Consensus       203 ~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~-------~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  203 SLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGA-------DLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccccCCchHHHHHhcCCcceEehhhhcCC-------cccccccCCCCHHHHHHHh
Confidence            999888 999999999999999999996666667       8889999999999999877

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.5e-25  Score=218.88  Aligned_cols=79  Identities=19%  Similarity=0.198  Sum_probs=76.7

Q ss_pred             CChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhH
Q 041922          217 KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALH  296 (523)
Q Consensus       217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH  296 (523)
                      +.||+|.|+..++.+++++|+++ |++++.+|..|+||||+|+.+|+.+++++|+++|+       ++|.+|..|+||||
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~-GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA-------dIN~~d~~G~TpLh  259 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPY-IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGA-------NVNAVMSNGYTCLD  259 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhC-cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-------CCCCcCCCCCCHHH
Confidence            78999999999999999999997 89999999999999999999999999999999999       99999999999999


Q ss_pred             HHHHhCC
Q 041922          297 LAAKFGE  303 (523)
Q Consensus       297 ~Aa~~~~  303 (523)
                      +|+..|+
T Consensus       260 ~Aa~~g~  266 (437)
T PHA02795        260 VAVDRGS  266 (437)
T ss_pred             HHHHcCC
Confidence            9999986

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=5.9e-25  Score=202.26  Aligned_cols=171  Identities=10%  Similarity=0.068  Sum_probs=143.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcC--CHHHHHHHHHHhcccccccccccc-cCCChHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAG--QTNIVSELVEIMGENASNVLKIQN-DRGDTAL   79 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~~d-~~G~TpL   79 (523)
                      ..||+.|+..|+.+.|+.++..     .+..|..|.||||+|+..+  +.+++++|++.|+     +++.++ ..|.|||
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~ga-----dvn~~~~~~g~TpL   91 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGA-----DVNFKTRDNNLSAL   91 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCC-----CCCccCCCCCCCHH
Confidence            3689999999999999999864     3567899999999999865  8999999999864     588887 5899999


Q ss_pred             hHHHHc---CCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCC
Q 041922           80 HLAAAL---GNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDT  156 (523)
Q Consensus        80 h~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~  156 (523)
                      |+|+..   ++.+++++|+++|+++                                  +.+|..|.||||.|+..    
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadi----------------------------------n~~d~~G~TpLh~a~~~----  133 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSI----------------------------------TEEDEDGKNLLHMYMCN----  133 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCC----------------------------------CCcCCCCCCHHHHHHHh----
Confidence            998864   4799999999987655                                  77899999999976410    


Q ss_pred             ccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHH-HHHcChHH
Q 041922          157 FSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILI-AAKMGVTE  231 (523)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~-Aa~~g~~~  231 (523)
                                                              .....+++++|+++    +.+|.+|.||||. |+..|+.+
T Consensus       134 ----------------------------------------~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859        134 ----------------------------------------FNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             ----------------------------------------ccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHH
Confidence                                                    01125689999988    6778899999996 56788999


Q ss_pred             HHHHHHhhCCCcccccccCCCcHHHHHHHcC
Q 041922          232 MVEKILDTIPVAIHDLDSEKKNLVLLAVENR  262 (523)
Q Consensus       232 ~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~  262 (523)
                      ++++|++. |++++.+|..|+||||+|..++
T Consensus       174 iv~~Ll~~-Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        174 IFDFLTSL-GIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHc-CCCCCCCCCCCCCHHHHHhhhh
Confidence            99999997 8999999999999999998764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=3.7e-23  Score=226.67  Aligned_cols=232  Identities=17%  Similarity=0.148  Sum_probs=167.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHH-HHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALH-IAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL   81 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh-~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~   81 (523)
                      .+.++.|+..|+.+.++.++++.++.+.|..|..|+|||| .|+.+++.++++.|++.+.         ++..|+||||.
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~---------~~~~G~T~Lh~   88 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC---------RGAVGDTLLHA   88 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC---------CCCcChHHHHH
Confidence            3578999999999999999988667788889999999999 8999999999999998641         67889999999


Q ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCC
Q 041922           82 AAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPE  161 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~  161 (523)
                      |+. ++.+.++.++....+.....                                    +..++..+..          
T Consensus        89 A~~-~~~~~v~~ll~~l~~~~~~~------------------------------------~~~~~~~~~~----------  121 (743)
T TIGR00870        89 ISL-EYVDAVEAILLHLLAAFRKS------------------------------------GPLELANDQY----------  121 (743)
T ss_pred             HHh-ccHHHHHHHHHHHhhccccc------------------------------------Cchhhhcccc----------
Confidence            987 33444444443321110000                                    0000000000          


Q ss_pred             CCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCC
Q 041922          162 TPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIP  241 (523)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~  241 (523)
                                                                       ...+..|.||||+|+.+|+.++++.|+++ |
T Consensus       122 -------------------------------------------------~~~~~~G~TpLhlAa~~~~~eiVklLL~~-G  151 (743)
T TIGR00870       122 -------------------------------------------------TSEFTPGITALHLAAHRQNYEIVKLLLER-G  151 (743)
T ss_pred             -------------------------------------------------ccccCCCCcHHHHHHHhCCHHHHHHHHhC-C
Confidence                                                             11234699999999999999999999997 8


Q ss_pred             Ccccccc--------------cCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          242 VAIHDLD--------------SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       242 ~~~~~~d--------------~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      ++++.++              ..|+||||.|+..|+.+++++|+++|+       ++|.+|+.|+||||+|+..+..+..
T Consensus       152 Adv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga-------din~~d~~g~T~Lh~A~~~~~~~~~  224 (743)
T TIGR00870       152 ASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA-------DILTADSLGNTLLHLLVMENEFKAE  224 (743)
T ss_pred             CCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc-------chhhHhhhhhHHHHHHHhhhhhhHH
Confidence            9988653              369999999999999999999999999       9999999999999999998742210


Q ss_pred             cCCcchhhhHHHhHHHHHHHhhCCc-----ccccccCCCCCChhHHhhhhhh
Q 041922          308 RIPGAALQMQWEIKWYKFVKESMPR-----YFFLGYNNKGKTPKEIFTKTHK  354 (523)
Q Consensus       308 ~~~g~~l~~~~~~~~~~~v~~~~~~-----~~~~~~n~~G~Tpl~la~~~~~  354 (523)
                           ....  .....+.+......     ...+.+|++|.||+++|.+..+
T Consensus       225 -----~~~l--~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~  269 (743)
T TIGR00870       225 -----YEEL--SCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGR  269 (743)
T ss_pred             -----HHHH--HHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCC
Confidence                 0000  00011112211111     1136789999999999987643

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=2.3e-24  Score=237.49  Aligned_cols=178  Identities=15%  Similarity=0.174  Sum_probs=149.1

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCcee
Q 041922           33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANC  112 (523)
Q Consensus        33 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~  112 (523)
                      .+.++.++||.||..|+.++++.|++.|.     ++|.+|.+|+||||+|+..|+.+++++|+++|+++           
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~-----d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-----------  584 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKL-----DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-----------  584 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-----------
Confidence            35567788999999999999999888753     48888889999999999999999999998877544           


Q ss_pred             EeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCc
Q 041922          113 SWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNA  192 (523)
Q Consensus       113 l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (523)
                                             +.+|.+|+||||.|+.                                         
T Consensus       585 -----------------------n~~d~~G~TpL~~A~~-----------------------------------------  600 (823)
T PLN03192        585 -----------------------HIRDANGNTALWNAIS-----------------------------------------  600 (823)
T ss_pred             -----------------------CCcCCCCCCHHHHHHH-----------------------------------------
Confidence                                   6678888899997762                                         


Q ss_pred             chhhhhHHHHHHHHHHhc--ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHH
Q 041922          193 RDETATAAVQELKFMKKK--DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLL  270 (523)
Q Consensus       193 ~~~~~~~~~~~v~~Ll~~--~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~L  270 (523)
                        .+|   .++++.|++.  ......|.+|||.|+..|+.++++.|+++ |+++|.+|.+|+||||+|+..|+.+++++|
T Consensus       601 --~g~---~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        601 --AKH---HKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             --hCC---HHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence              222   3477777765  22334688999999999999999999997 899999999999999999999999999999


Q ss_pred             HhccccCCccccccccccCCC-CcHhHHHHHhCC
Q 041922          271 LDRKMLGESDLNIFEHVDIKG-NSALHLAAKFGE  303 (523)
Q Consensus       271 l~~~~~~~~~~~~in~~d~~G-~TpLH~Aa~~~~  303 (523)
                      +++|+       +++.+|.+| .||++++.....
T Consensus       675 l~~GA-------dv~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        675 IMNGA-------DVDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             HHcCC-------CCCCCCCCCCCCHHHHHHHHHH
Confidence            99999       999999988 999999876543

>PF13962 PGG: Domain of unknown function

Probab=99.91  E-value=3.7e-24  Score=175.56  Aligned_cols=109  Identities=38%  Similarity=0.631  Sum_probs=96.0

Q ss_pred             hHHHHhhhchhHHHHHHHHHHHHHhhccCCCCCCCC---CCcccccCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 041922          361 QEWLSRTSESCLVVAALIASVALTTSATVPGGLNEQ---SGKPILENEP-AFKIFAISSFVALCFSMTALSFFFSILTST  436 (523)
Q Consensus       361 ~~~~~~~~~~~~~va~Liatvtf~a~~t~Pgg~~~~---~G~~~~~~~~-~f~~F~~~~~~a~~~s~~~~~~~~~~~~~~  436 (523)
                      +||++++++++++||+||||+||+|+|+|||||+|+   .|+|++.+++ .|++|+++|+++|++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            479999999999999999999999999999999875   6999998888 999999999999999999998877422   


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 041922          437 YREKDLAMALPRKLLLGLTSLFTSIAAIMISFCSGHFSV  475 (523)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~s~~~m~~af~~~~~~~  475 (523)
                         .++.+..++.+.++..++++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               334444556677888999999999999999999875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=1.1e-22  Score=224.29  Aligned_cols=191  Identities=13%  Similarity=0.072  Sum_probs=152.7

Q ss_pred             cCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhh
Q 041922           47 AGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHR  126 (523)
Q Consensus        47 ~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~  126 (523)
                      .+..++-..+.+.+       ....+.++.++||.||..|+.++++.|++.|+++                         
T Consensus       504 l~~l~v~~ll~~~~-------~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-------------------------  551 (823)
T PLN03192        504 LHDLNVGDLLGDNG-------GEHDDPNMASNLLTVASTGNAALLEELLKAKLDP-------------------------  551 (823)
T ss_pred             hccccHHHHHhhcc-------cccCCccchhHHHHHHHcCCHHHHHHHHHCCCCC-------------------------
Confidence            34445555555432       1234556889999999999999999999987654                         


Q ss_pred             hhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHH
Q 041922          127 EKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKF  206 (523)
Q Consensus       127 ~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~  206 (523)
                               |..|.+|+||||.|+.                                              .+..++++.
T Consensus       552 ---------n~~d~~G~TpLh~Aa~----------------------------------------------~g~~~~v~~  576 (823)
T PLN03192        552 ---------DIGDSKGRTPLHIAAS----------------------------------------------KGYEDCVLV  576 (823)
T ss_pred             ---------CCCCCCCCCHHHHHHH----------------------------------------------cChHHHHHH
Confidence                     6789999999998873                                              223568888


Q ss_pred             HHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCcccc
Q 041922          207 MKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLN  282 (523)
Q Consensus       207 Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~  282 (523)
                      |+++    +.+|.+|.||||+|+..|+.++++.|++. ++..+  ...|.++||.|+.+|+.+++++|+++|+       
T Consensus       577 Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~-~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga-------  646 (823)
T PLN03192        577 LLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHF-ASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGL-------  646 (823)
T ss_pred             HHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhc-CcccC--cccCchHHHHHHHhCCHHHHHHHHHCCC-------
Confidence            9887    67788999999999999999999999975 54433  3568899999999999999999999999       


Q ss_pred             ccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCC-CChhHHhhhhh
Q 041922          283 IFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKG-KTPKEIFTKTH  353 (523)
Q Consensus       283 ~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G-~Tpl~la~~~~  353 (523)
                      ++|.+|.+|+||||+|+..|+.+++                   +.++..++ ++..|.+| .||.+++....
T Consensus       647 din~~d~~G~TpLh~A~~~g~~~iv-------------------~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        647 NVDSEDHQGATALQVAMAEDHVDMV-------------------RLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCCCCCCCCCCHHHHHHHCCcHHHH-------------------HHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999996643                   33333344 57888888 99999886543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=1.6e-23  Score=193.62  Aligned_cols=174  Identities=21%  Similarity=0.228  Sum_probs=144.0

Q ss_pred             CCHHHHHHHHHcCCC-------ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHc
Q 041922           13 GQWDNFVQAYENNPM-------SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAAL   85 (523)
Q Consensus        13 g~~~~v~~ll~~~~~-------~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~   85 (523)
                      .+.+.|..+|.....       ..+|.-|.+|+|+||||+.+++.++|+.||+.|-    ++++.+|+.|.||.++|+..
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv----C~VD~qNrAGYtpiMLaALA  312 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGV----CDVDQQNRAGYTPVMLAALA  312 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCc----ccccccccccccHHHHHHHH
Confidence            355666666653211       3467789999999999999999999999999763    67999999999999999853


Q ss_pred             -----CCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCC
Q 041922           86 -----GNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVP  160 (523)
Q Consensus        86 -----g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l  160 (523)
                           .+.++|..|.+.| ++|.+                                                        
T Consensus       313 ~lk~~~d~~vV~~LF~mg-nVNaK--------------------------------------------------------  335 (452)
T KOG0514|consen  313 KLKQPADRTVVERLFKMG-DVNAK--------------------------------------------------------  335 (452)
T ss_pred             hhcchhhHHHHHHHHhcc-Ccchh--------------------------------------------------------
Confidence                 3466666666654 22110                                                        


Q ss_pred             CCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhC
Q 041922          161 ETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTI  240 (523)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~  240 (523)
                                                                          -...|+|+|++|+.+|+.++|+.||. |
T Consensus       336 ----------------------------------------------------AsQ~gQTALMLAVSHGr~d~vk~LLa-c  362 (452)
T KOG0514|consen  336 ----------------------------------------------------ASQHGQTALMLAVSHGRVDMVKALLA-C  362 (452)
T ss_pred             ----------------------------------------------------hhhhcchhhhhhhhcCcHHHHHHHHH-c
Confidence                                                                01249999999999999999999998 7


Q ss_pred             CCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          241 PVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       241 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      |+|+|.+|.+|-|+|++|+++||.||+++||....-      ++...|.+|-|+|.+|...|+.++
T Consensus       363 gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~c------d~sLtD~DgSTAl~IAleagh~eI  422 (452)
T KOG0514|consen  363 GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSC------DISLTDVDGSTALSIALEAGHREI  422 (452)
T ss_pred             cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcc------cceeecCCCchhhhhHHhcCchHH
Confidence            999999999999999999999999999999988763      889999999999999999999775

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-22  Score=197.90  Aligned_cols=223  Identities=20%  Similarity=0.224  Sum_probs=172.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHH
Q 041922            5 CLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAA   84 (523)
Q Consensus         5 ~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~   84 (523)
                      .++.|+..|+.+.+..+|..  +...+..+.+|.|+||-+|.-.+.+||++|++.++     .+|..|..|+||||.|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~--ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga-----~Vn~~d~e~wtPlhaaas  115 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNR--GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGA-----NVNAQDNEGWTPLHAAAS  115 (527)
T ss_pred             HHHhccccccHHHHHHHhcc--CCCccccCCccchhHHHHHhcccHHHHHHHHHhcC-----CccccccccCCcchhhcc
Confidence            47889999999999999998  56668899999999999999999999999999975     599999999999999999


Q ss_pred             cCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCC
Q 041922           85 LGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPP  164 (523)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~  164 (523)
                      .||.+++++|++.|+++....                                  .+|..|+-.+...            
T Consensus       116 cg~~~i~~~li~~gA~~~avN----------------------------------sdg~~P~dl~e~e------------  149 (527)
T KOG0505|consen  116 CGYLNIVEYLIQHGANLLAVN----------------------------------SDGNMPYDLAEDE------------  149 (527)
T ss_pred             cccHHHHHHHHHhhhhhhhcc----------------------------------CCCCCccccccCc------------
Confidence            999999999999998875433                                  3444444433211            


Q ss_pred             CCCccccchhhhHHHHHHHHhhccCCCcc----hhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHH
Q 041922          165 VLENDQIFQSRNICLESAVAVHNKDGNAR----DETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKI  236 (523)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~L  236 (523)
                                  .+...+.......+...    ......-++-++..+..    +..+..|.|.||.|+.+|..++.++|
T Consensus       150 ------------a~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lL  217 (527)
T KOG0505|consen  150 ------------ATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALL  217 (527)
T ss_pred             ------------chhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHH
Confidence                        01111111111111000    00000001112222222    45555699999999999999999999


Q ss_pred             HhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHH
Q 041922          237 LDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAK  300 (523)
Q Consensus       237 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~  300 (523)
                      ++. +.+++.+|.+|+||||.|+.-|+.+++++|+++|+       +++.....|.||+.+|..
T Consensus       218 l~a-g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga-------~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  218 LQA-GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA-------DMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHh-ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc-------ccchhhhcCCCCccchhh
Confidence            997 89999999999999999999999999999999999       999999999999999875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=1.1e-23  Score=181.71  Aligned_cols=201  Identities=18%  Similarity=0.178  Sum_probs=162.5

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcC
Q 041922            7 SKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALG   86 (523)
Q Consensus         7 ~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g   86 (523)
                      -.+...|+.+..+..+.-+|.... ..+++|+.++|.|+-+|+.+.+..++..+..     .|..+-.+.+|+.+++.+.
T Consensus        67 ~~~~~s~nsd~~v~s~~~~~~~~~-~t~p~g~~~~~v~ap~~s~~k~sttltN~~r-----gnevs~~p~s~~slsVhql  140 (296)
T KOG0502|consen   67 TVAVRSGNSDVAVQSAQLDPDAID-ETDPEGWSALLVAAPCGSVDKVSTTLTNGAR-----GNEVSLMPWSPLSLSVHQL  140 (296)
T ss_pred             chhhhcCCcHHHHHhhccCCCCCC-CCCchhhhhhhhcCCCCCcceeeeeeccccc-----CCccccccCChhhHHHHHH
Confidence            346677888888777776666544 4577788899998888888888888876543     5667777888888888877


Q ss_pred             CHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCC
Q 041922           87 NEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVL  166 (523)
Q Consensus        87 ~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~  166 (523)
                      +.+.+..+.++                                    .+|..|+.|.|||.+|+.               
T Consensus       141 ~L~~~~~~~~n------------------------------------~VN~~De~GfTpLiWAaa---------------  169 (296)
T KOG0502|consen  141 HLDVVDLLVNN------------------------------------KVNACDEFGFTPLIWAAA---------------  169 (296)
T ss_pred             HHHHHHHHhhc------------------------------------cccCccccCchHhHHHHh---------------
Confidence            77777666543                                    236677888888887662               


Q ss_pred             CccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          167 ENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                  .+|   ++++++|++.    +...+...|+|.+|++.|..++|+.||.+ +.
T Consensus       170 ----------------------------~G~---i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r-~v  217 (296)
T KOG0502|consen  170 ----------------------------KGH---IPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTR-EV  217 (296)
T ss_pred             ----------------------------cCc---hHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc-CC
Confidence                                        223   3477777776    23335678999999999999999999996 89


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCC
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGE  303 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  303 (523)
                      |+|..|.+|-|||-+|++.++.+|++.|++.|+       +++..|..|++++.+|+..|+
T Consensus       218 dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA-------d~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  218 DVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA-------DVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             CcceeccCCCceeeeeecCChHHHHHHHHhcCC-------CcccccccCCcHHHHHHHhhh
Confidence            999999999999999999999999999999999       999999999999999999998

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=208.11  Aligned_cols=298  Identities=11%  Similarity=0.026  Sum_probs=186.5

Q ss_pred             hHHHHHHHcCCHHHH--HHHHHcCCCccccccCCCCCcHHHHHHHcCCHH-HHHHHHHHhcccccccccccccCCChHHh
Q 041922            4 NCLSKFAMRGQWDNF--VQAYENNPMSREAKLTRSGDTALHIAAAAGQTN-IVSELVEIMGENASNVLKIQNDRGDTALH   80 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v--~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~-~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh   80 (523)
                      +-|+..+..=+.+.+  +.|+++  |.+.-. ..+|.||||+-..+.+.- -++.++..+.     ..+..|.+|.+|+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~n~~~~~~~~   76 (631)
T PHA02792          5 KILYDSCKTFNIDACSAQSLIES--GANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLLS-----SVDYKNINDFDIFE   76 (631)
T ss_pred             hHHHhHhhccchhHHHHHHHHHc--CCCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHHh-----CCCcCccCCccHHH
Confidence            345666666655554  445555  555434 467779999886665532 2233333332     26778888888887


Q ss_pred             HH-HHcCCHHHHHHHHhcCcccccccCCCCc-eeEecc-CCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCC
Q 041922           81 LA-AALGNEAMCHCMASKDRELISAADEGLA-NCSWSS-GNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDT  156 (523)
Q Consensus        81 ~A-~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~-~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~  156 (523)
                      +- ..+|+.|+|++|+++|++++.+++.+.+ ++.++. .++.++ ++|+++   |++++..+..|.||++....+.   
T Consensus        77 ~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~---Gad~~~~~~~g~~~~~~~~~~~---  150 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDK---GIPTCSNIQYGYKIIIEQITRA---  150 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHC---CCCcccccccCcchhhhhcccc---
Confidence            64 4578888999999999888888776555 345533 355554 888887   8887778888888888554311   


Q ss_pred             ccCCCC--C-----------CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCCh
Q 041922          157 FSVPET--P-----------PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKAT  219 (523)
Q Consensus       157 ~~~l~~--~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~t  219 (523)
                       ++...  .           .+...+..+.++...        .++.    .+.....++++.|+++    +..|..|.|
T Consensus       151 -~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~--------~~s~----~~~~~~~~v~k~Li~~g~~~~~~d~~g~t  217 (631)
T PHA02792        151 -EYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII--------TRSQ----DGYATSLDVINYLISHEKEMRYYTYREHT  217 (631)
T ss_pred             -cccchhhhccccccccccccCCCCCCchHHHHHh--------hCCc----ccccCCHHHHHHHHhCCCCcCccCCCCCh
Confidence             01000  0           001111122222110        0000    0001135688888888    446677888


Q ss_pred             HHHHHHHcC--hHHHHHHHHhhC---------------------------------------------------------
Q 041922          220 PILIAAKMG--VTEMVEKILDTI---------------------------------------------------------  240 (523)
Q Consensus       220 pLh~Aa~~g--~~~~v~~Ll~~~---------------------------------------------------------  240 (523)
                      |||+|+.+.  +.|+++.|++.+                                                         
T Consensus       218 ~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~  297 (631)
T PHA02792        218 TLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISS  297 (631)
T ss_pred             HHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHH
Confidence            888888887  667777776631                                                         


Q ss_pred             ---------------------------------CCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccc
Q 041922          241 ---------------------------------PVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHV  287 (523)
Q Consensus       241 ---------------------------------~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~  287 (523)
                                                       |++.+  ...+.+++|.|+.+|+.+++++|+++|+       ++|.+
T Consensus       298 ~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GA-------DIN~k  368 (631)
T PHA02792        298 ILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGN-------VVVED  368 (631)
T ss_pred             HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCC-------chhhh
Confidence                                             11110  0024567889999999999999999999       99999


Q ss_pred             cCCC--CcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          288 DIKG--NSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       288 d~~G--~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                      |++|  .||||+|+.....+.                .+.++.+++.++ ++.+|+.|+||+++|....
T Consensus       369 D~~g~~~TpLh~A~~n~~~~v----------------~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~  421 (631)
T PHA02792        369 DDNIINIMPLFPTLSIHESDV----------------LSILKLCKPYIDDINKIDKHGRSILYYCIESH  421 (631)
T ss_pred             cCCCCChhHHHHHHHhccHhH----------------HHHHHHHHhcCCccccccccCcchHHHHHHcC
Confidence            9875  699998776554321                122344444443 6899999999999998654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.88  E-value=3.7e-22  Score=197.53  Aligned_cols=190  Identities=14%  Similarity=0.029  Sum_probs=154.9

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhccccccccc------ccccCCChHHhHHHH--cC
Q 041922           15 WDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK------IQNDRGDTALHLAAA--LG   86 (523)
Q Consensus        15 ~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~------~~d~~G~TpLh~A~~--~g   86 (523)
                      .+.+-+++..+ +.+++..+.+|     +|+..+..|+++.|+.++.+     ++      .++..++|+||+|+.  .|
T Consensus        61 ~~~~~~~~~~~-~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~-----~~~~~~~~~~~~~~~~~L~~~~~n~~n  129 (437)
T PHA02795         61 VDVLYDYFRIH-RDNIDQYIVDR-----LFAYITYKDIISALVSKNYM-----EDIFSIIIKNCNSVQDLLLYYLSNAYV  129 (437)
T ss_pred             HHHHHHHHHHc-Ccchhhhhhhh-----HHhhcchHHHHHHHHhcccc-----cchhhhhhhccccccHHHHHHHHhcCC
Confidence            44444444443 55666666666     99999999999999998753     44      688889999999999  89


Q ss_pred             CHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCC
Q 041922           87 NEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVL  166 (523)
Q Consensus        87 ~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~  166 (523)
                      +.+++++|+++|++++.                                                               
T Consensus       130 ~~eiV~~LI~~GADIn~---------------------------------------------------------------  146 (437)
T PHA02795        130 EIDIVDFMVDHGAVIYK---------------------------------------------------------------  146 (437)
T ss_pred             CHHHHHHHHHCCCCCCC---------------------------------------------------------------
Confidence            99999999999998732                                                               


Q ss_pred             CccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCc-cc
Q 041922          167 ENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVA-IH  245 (523)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~-~~  245 (523)
                                                                      .++.||+|.|+..|+.+++++|+++ |++ .+
T Consensus       147 ------------------------------------------------~~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n  177 (437)
T PHA02795        147 ------------------------------------------------IECLNAYFRGICKKESSVVEFILNC-GIPDEN  177 (437)
T ss_pred             ------------------------------------------------CCCCCHHHHHHHcCcHHHHHHHHhc-CCcccc
Confidence                                                            1257899999999999999999998 653 33


Q ss_pred             cc-----ccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHh
Q 041922          246 DL-----DSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEI  320 (523)
Q Consensus       246 ~~-----d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~  320 (523)
                      ..     +..|.|++|.|..+++.+++++|+++|+       ++|.+|.+|+||||+|+..|+.++              
T Consensus       178 ~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA-------DIN~kD~~G~TpLh~Aa~~g~~ei--------------  236 (437)
T PHA02795        178 DVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE-------DINQLDAGGRTLLYRAIYAGYIDL--------------  236 (437)
T ss_pred             cccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC-------CcCcCCCCCCCHHHHHHHcCCHHH--------------
Confidence            32     2358899999999999999999999999       999999999999999999999654              


Q ss_pred             HHHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          321 KWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       321 ~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                           ++.++..++ ++.+|.+|.||+|+|.+..
T Consensus       237 -----VelLL~~GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        237 -----VSWLLENGANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             -----HHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence                 333444455 6999999999999998764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=1.5e-22  Score=203.49  Aligned_cols=235  Identities=17%  Similarity=0.153  Sum_probs=196.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCC-----------CccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccc
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNP-----------MSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN   72 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~-----------~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d   72 (523)
                      +.+..|+..||.+.+..+|+...           ....+..|.+|.|.||.||.+|+.++++.|++.-     ..++..|
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~e-----a~ldl~d   79 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYE-----ALLDLCD   79 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcch-----hhhhhhh
Confidence            46889999999999999997431           1345678899999999999999999999999863     5688899


Q ss_pred             cCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCC
Q 041922           73 DRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRP  150 (523)
Q Consensus        73 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~  150 (523)
                      ..|.+|||+|+..|+.++++.++.++..++.....+.+ +++++..++.++ .+|+.+   +++.-.+|+.+.|+|-.|+
T Consensus        80 ~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~---~adp~i~nns~~t~ldlA~  156 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKK---NADPFIRNNSKETVLDLAS  156 (854)
T ss_pred             ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhc---CCCccccCcccccHHHHHH
Confidence            99999999999999999999999999666665555555 777777777775 888888   8999999999999999776


Q ss_pred             CCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc------------ccccCCCC
Q 041922          151 DKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK------------DQQSGRKA  218 (523)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~------------~~~~~~g~  218 (523)
                      .                                              .+..++++.|+..            ..++-.+.
T Consensus       157 q----------------------------------------------fgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~  190 (854)
T KOG0507|consen  157 R----------------------------------------------FGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAI  190 (854)
T ss_pred             H----------------------------------------------hhhhHHHHHHhhhccchhhcccCCCCCCCCCCc
Confidence            3                                              2223344444433            33445789


Q ss_pred             hHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHH
Q 041922          219 TPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLA  298 (523)
Q Consensus       219 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~A  298 (523)
                      +|||.|+++||.++++.|++. |-++|....+| |+||.|+..|..++|.+|++.|.       +...+|..|.|+|.+-
T Consensus       191 ~plHlaakngh~~~~~~ll~a-g~din~~t~~g-talheaalcgk~evvr~ll~~gi-------n~h~~n~~~qtaldil  261 (854)
T KOG0507|consen  191 YPLHLAAKNGHVECMQALLEA-GFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGI-------NTHIKNQHGQTALDII  261 (854)
T ss_pred             CCcchhhhcchHHHHHHHHhc-CCCcccccccc-hhhhhHhhcCcchhhhHHHhhcc-------ccccccccchHHHHHH
Confidence            999999999999999999997 99999876665 89999999999999999999999       9999999999999887


Q ss_pred             HHh
Q 041922          299 AKF  301 (523)
Q Consensus       299 a~~  301 (523)
                      ...
T Consensus       262 ~d~  264 (854)
T KOG0507|consen  262 IDL  264 (854)
T ss_pred             Hhc
Confidence            654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=6.6e-22  Score=175.17  Aligned_cols=145  Identities=12%  Similarity=0.136  Sum_probs=123.9

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHH----HHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHH---HHHHHhcCc
Q 041922           27 MSREAKLTRSGDTALHIAAAAGQTN----IVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM---CHCMASKDR   99 (523)
Q Consensus        27 ~~~~~~~~~~g~T~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~i---v~~Ll~~~~   99 (523)
                      +++.+..+.++.++||.||+.|+.+    ++++|++.+     ..++.+|.+|+||||+|+..|+.+.   +++|++.|+
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g-----~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga   84 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDG-----HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA   84 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc-----hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC
Confidence            4566678888999999999999984    444555543     4588899999999999999998654   889999987


Q ss_pred             ccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHH
Q 041922          100 ELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICL  179 (523)
Q Consensus       100 ~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  179 (523)
                      +++                                                                             
T Consensus        85 din-----------------------------------------------------------------------------   87 (166)
T PHA02743         85 DIN-----------------------------------------------------------------------------   87 (166)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            762                                                                             


Q ss_pred             HHHHHhhccCCCcchhhhhHHHHHHHHHHhccccc-CCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHH
Q 041922          180 ESAVAVHNKDGNARDETATAAVQELKFMKKKDQQS-GRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLA  258 (523)
Q Consensus       180 ~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A  258 (523)
                                                      .++ ..|.||||+|+..|+.+++++|++..+++++.+|..|+||||+|
T Consensus        88 --------------------------------~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A  135 (166)
T PHA02743         88 --------------------------------ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIA  135 (166)
T ss_pred             --------------------------------CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHH
Confidence                                            233 35899999999999999999999655899999999999999999


Q ss_pred             HHcCchhHHHHHHhccccCCccccccccccCCCC
Q 041922          259 VENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       259 ~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                      +..++.+++++|+++|+       +++.++..|.
T Consensus       136 ~~~~~~~iv~~Ll~~ga-------~~~~~~~~~~  162 (166)
T PHA02743        136 YKMRDRRMMEILRANGA-------VCDDPLSIGL  162 (166)
T ss_pred             HHcCCHHHHHHHHHcCC-------CCCCcccCCc
Confidence            99999999999999999       8888888775

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=2e-21  Score=172.93  Aligned_cols=136  Identities=18%  Similarity=0.263  Sum_probs=117.0

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHhcc-cccccccccccCCChHHhHHHHcCC----HHHHHHHHhcCccccccc
Q 041922           31 AKLTRSGDTALHIAAAAGQTNIVSELVEIMGE-NASNVLKIQNDRGDTALHLAAALGN----EAMCHCMASKDRELISAA  105 (523)
Q Consensus        31 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~~~~~d~~G~TpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~  105 (523)
                      +.+|..|.||||+|++.|+.++++.|+..... ....+++.+|..|+||||+|+..|+    .+++++|++.|++++   
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin---   91 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN---   91 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC---
Confidence            34678999999999999999999998764310 1124689999999999999999999    588999999887662   


Q ss_pred             CCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHh
Q 041922          106 DEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAV  185 (523)
Q Consensus       106 ~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  185 (523)
                                                                                                      
T Consensus        92 --------------------------------------------------------------------------------   91 (169)
T PHA02741         92 --------------------------------------------------------------------------------   91 (169)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCcchhhhhHHHHHHHHHHhccccc-CCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCch
Q 041922          186 HNKDGNARDETATAAVQELKFMKKKDQQS-GRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQT  264 (523)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~  264 (523)
                                                .++ ..|.||||+|+..|+.+++++|++..+++++..|.+|+||||+|+..++.
T Consensus        92 --------------------------~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~  145 (169)
T PHA02741         92 --------------------------AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV  145 (169)
T ss_pred             --------------------------CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH
Confidence                                      223 25899999999999999999999855899999999999999999999999


Q ss_pred             hHHHHHHhccc
Q 041922          265 GIYKLLLDRKM  275 (523)
Q Consensus       265 ~iv~~Ll~~~~  275 (523)
                      +++++|++.++
T Consensus       146 ~iv~~L~~~~~  156 (169)
T PHA02741        146 AMMQILREIVA  156 (169)
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1.6e-21  Score=171.19  Aligned_cols=135  Identities=14%  Similarity=0.144  Sum_probs=110.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhc--ccccccccccccCCChHHhHHHHcCCH---HHHHHHHhcCcccccc
Q 041922           30 EAKLTRSGDTALHIAAAAGQTNIVSELVEIMG--ENASNVLKIQNDRGDTALHLAAALGNE---AMCHCMASKDRELISA  104 (523)
Q Consensus        30 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~--~~~~~~~~~~d~~G~TpLh~A~~~g~~---~iv~~Ll~~~~~~~~~  104 (523)
                      .+..|.+|.||||+|++.|+.  ++.+.....  +..+..++.+|.+|+||||+|+..|+.   +++++|++.|++++  
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin--   85 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN--   85 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc--
Confidence            456788999999999999984  333332221  112234667899999999999999987   46889999987662  


Q ss_pred             cCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHH
Q 041922          105 ADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVA  184 (523)
Q Consensus       105 ~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  184 (523)
                                                                                                      
T Consensus        86 --------------------------------------------------------------------------------   85 (154)
T PHA02736         86 --------------------------------------------------------------------------------   85 (154)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccCCCcchhhhhHHHHHHHHHHhccccc-CCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCc
Q 041922          185 VHNKDGNARDETATAAVQELKFMKKKDQQS-GRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQ  263 (523)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  263 (523)
                                                 .++ ..|.||||+|+..|+.+++++|++..+++++.+|..|+||||+|+..|+
T Consensus        86 ---------------------------~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~  138 (154)
T PHA02736         86 ---------------------------GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHD  138 (154)
T ss_pred             ---------------------------ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCC
Confidence                                       233 3699999999999999999999986689999999999999999999999


Q ss_pred             hhHHHHHHhccc
Q 041922          264 TGIYKLLLDRKM  275 (523)
Q Consensus       264 ~~iv~~Ll~~~~  275 (523)
                      .+++++|+++|+
T Consensus       139 ~~i~~~Ll~~ga  150 (154)
T PHA02736        139 AKMMNILRAKGA  150 (154)
T ss_pred             HHHHHHHHHcCC
Confidence            999999999998

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.85  E-value=2.1e-19  Score=197.19  Aligned_cols=202  Identities=20%  Similarity=0.151  Sum_probs=138.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccc-----cc----cccccC
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASN-----VL----KIQNDR   74 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-----~~----~~~d~~   74 (523)
                      .+||.+|..|+...+.++|.+++.     .+..|+||||.|+. |..+.++.++.......+.     ..    ...+..
T Consensus        54 t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~  127 (743)
T TIGR00870        54 SALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTP  127 (743)
T ss_pred             hHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHh-ccHHHHHHHHHHHhhcccccCchhhhccccccccCC
Confidence            577846666666556566655422     57889999999987 3344444444432211100     11    123457


Q ss_pred             CChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCC
Q 041922           75 GDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDG  154 (523)
Q Consensus        75 G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~  154 (523)
                      |.||||+||.+|+.+++++|+++|++++...+..                                   .... ..    
T Consensus       128 G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~-----------------------------------~~~~-~~----  167 (743)
T TIGR00870       128 GITALHLAAHRQNYEIVKLLLERGASVPARACGD-----------------------------------FFVK-SQ----  167 (743)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCc-----------------------------------hhhc-CC----
Confidence            9999999999999999999999999885321100                                   0000 00    


Q ss_pred             CCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHH
Q 041922          155 DTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVE  234 (523)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~  234 (523)
                                                                             .......|.||||.|+..|+.++++
T Consensus       168 -------------------------------------------------------~~~~~~~g~tpL~~Aa~~~~~~iv~  192 (743)
T TIGR00870       168 -------------------------------------------------------GVDSFYHGESPLNAAACLGSPSIVA  192 (743)
T ss_pred             -------------------------------------------------------CCCcccccccHHHHHHHhCCHHHHH
Confidence                                                                   0011235899999999999999999


Q ss_pred             HHHhhCCCcccccccCCCcHHHHHHHcC---------chhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCC
Q 041922          235 KILDTIPVAIHDLDSEKKNLVLLAVENR---------QTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYG  305 (523)
Q Consensus       235 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~---------~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~  305 (523)
                      .|++. |++++..|..|+||||+|+..+         ...+.+++++.++.........+.+|++|+||||+|+..|+.+
T Consensus       193 lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~  271 (743)
T TIGR00870       193 LLSED-PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIV  271 (743)
T ss_pred             HHhcC-CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCcc
Confidence            99996 8999999999999999999986         2346677777665211000022778999999999999999987


Q ss_pred             Cc
Q 041922          306 PW  307 (523)
Q Consensus       306 ~~  307 (523)
                      ++
T Consensus       272 l~  273 (743)
T TIGR00870       272 LF  273 (743)
T ss_pred             HH
Confidence            65

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.85  E-value=1e-18  Score=178.40  Aligned_cols=212  Identities=18%  Similarity=0.187  Sum_probs=158.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCC-------CccccccCCCCCcHHHHHHHc---CCHHHHHHHHHHhccccccccccccc
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNP-------MSREAKLTRSGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKIQND   73 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~-------~~~~~~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~d~   73 (523)
                      +++..+..+|+.+....++....       ..+++.+...|+|.||.|..+   ++.++++.|++..++-..+.--....
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            55677778888877777765421       245667778899999999974   56689999999865321122222346


Q ss_pred             CCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCC
Q 041922           74 RGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKD  153 (523)
Q Consensus        74 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~  153 (523)
                      .|+||||+|+.+.+.++|++|++.|+|++....                         |.-....|..+.. -+      
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~-------------------------G~FF~~~dqk~~r-k~------  230 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARAC-------------------------GAFFCPDDQKASR-KS------  230 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhh-------------------------ccccCcccccccc-cc------
Confidence            799999999999999999999999999955321                         1111111110000 00      


Q ss_pred             CCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHH
Q 041922          154 GDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMV  233 (523)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v  233 (523)
                                         -+|.                                   -.-..|..||-.||..++.|++
T Consensus       231 -------------------T~Y~-----------------------------------G~~YfGEyPLSfAAC~nq~eiv  256 (782)
T KOG3676|consen  231 -------------------TNYT-----------------------------------GYFYFGEYPLSFAACTNQPEIV  256 (782)
T ss_pred             -------------------cCCc-----------------------------------ceeeeccCchHHHHHcCCHHHH
Confidence                               0000                                   0112599999999999999999


Q ss_pred             HHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          234 EKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       234 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      ++|+++ |+|++.+|.+|+|.||..+.+-..++.++++++|+..     ....+|++|-|||-+||+.|..+++
T Consensus       257 rlLl~~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~-----l~~v~N~qgLTPLtLAaklGk~emf  324 (782)
T KOG3676|consen  257 RLLLAH-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA-----LEHVRNNQGLTPLTLAAKLGKKEMF  324 (782)
T ss_pred             HHHHhc-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc-----cccccccCCCChHHHHHHhhhHHHH
Confidence            999995 9999999999999999999999999999999999931     3889999999999999999997654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=2.1e-21  Score=167.55  Aligned_cols=133  Identities=17%  Similarity=0.174  Sum_probs=115.3

Q ss_pred             HHHHHHHHhc--ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCC
Q 041922          201 VQELKFMKKK--DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE  278 (523)
Q Consensus       201 ~~~v~~Ll~~--~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  278 (523)
                      ++.+..+.++  |..|+.|.|||.+|+..|++++|++||+. |++++..-+...++|.+|+..|..+||++|+.++.   
T Consensus       142 L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~v---  217 (296)
T KOG0502|consen  142 LDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTREV---  217 (296)
T ss_pred             HHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCC---
Confidence            4455555555  88899999999999999999999999997 99999999999999999999999999999999999   


Q ss_pred             ccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhhhHH
Q 041922          279 SDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHKELV  357 (523)
Q Consensus       279 ~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~~l~  357 (523)
                          ++|.-|-+|-|||-+|++-++.++                   ++.++..++ ++..+..|.+++++|.......+
T Consensus       218 ----dVNvyDwNGgTpLlyAvrgnhvkc-------------------ve~Ll~sGAd~t~e~dsGy~~mdlAValGyr~V  274 (296)
T KOG0502|consen  218 ----DVNVYDWNGGTPLLYAVRGNHVKC-------------------VESLLNSGADVTQEDDSGYWIMDLAVALGYRIV  274 (296)
T ss_pred             ----CcceeccCCCceeeeeecCChHHH-------------------HHHHHhcCCCcccccccCCcHHHHHHHhhhHHH
Confidence                999999999999999999999765                   444555555 68889999999999998765555


Q ss_pred             hhh
Q 041922          358 KDG  360 (523)
Q Consensus       358 ~~~  360 (523)
                      +..
T Consensus       275 qqv  277 (296)
T KOG0502|consen  275 QQV  277 (296)
T ss_pred             HHH
Confidence            443

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=4.2e-20  Score=164.42  Aligned_cols=88  Identities=16%  Similarity=0.185  Sum_probs=78.6

Q ss_pred             cccCCCChHHHHHHHcCh----HHHHHHHHhhCCCccccccc-CCCcHHHHHHHcCchhHHHHHHh-ccccCCccccccc
Q 041922          212 QQSGRKATPILIAAKMGV----TEMVEKILDTIPVAIHDLDS-EKKNLVLLAVENRQTGIYKLLLD-RKMLGESDLNIFE  285 (523)
Q Consensus       212 ~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~~~~~in  285 (523)
                      .+|..|.||||+|+..|+    .+++++|++. +++++.+|. +|+||||+|+.+++.+++++|++ .|+       +++
T Consensus        55 ~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~-------~~~  126 (169)
T PHA02741         55 ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGI-------DLH  126 (169)
T ss_pred             ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCC-------CCC
Confidence            355678999999999998    5889999986 899999985 99999999999999999999997 487       999


Q ss_pred             cccCCCCcHhHHHHHhCCCCCc
Q 041922          286 HVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       286 ~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      .+|.+|+||||+|+..++.+++
T Consensus       127 ~~n~~g~tpL~~A~~~~~~~iv  148 (169)
T PHA02741        127 FCNADNKSPFELAIDNEDVAMM  148 (169)
T ss_pred             cCCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999986543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.81  E-value=3.2e-19  Score=179.71  Aligned_cols=242  Identities=18%  Similarity=0.119  Sum_probs=195.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhcc--------cccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc
Q 041922           39 TALHIAAAAGQTNIVSELVEIMGE--------NASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA  110 (523)
Q Consensus        39 T~Lh~Aa~~g~~~~v~~Ll~~~~~--------~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  110 (523)
                      +=|--|+..|+.+.+..||+....        ..+...|.+|.+|.|+||.|+.+|+.+++++|+++.+-+...++++..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            456789999999999999986442        123558899999999999999999999999999999988888866666


Q ss_pred             -eeEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhcc
Q 041922          111 -NCSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNK  188 (523)
Q Consensus       111 -l~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (523)
                       +++++..++.++ ++++.+   ...+|..+.+|.||||.|+                                      
T Consensus        85 plhlaaw~g~~e~vkmll~q---~d~~na~~~e~~tplhlaa--------------------------------------  123 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQ---TDILNAVNIENETPLHLAA--------------------------------------  123 (854)
T ss_pred             eEEehhhcCcchHHHHHHhc---ccCCCcccccCcCccchhh--------------------------------------
Confidence             777777777774 888777   5777999999999999887                                      


Q ss_pred             CCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCc--------ccccccCCCcHHH
Q 041922          189 DGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVA--------IHDLDSEKKNLVL  256 (523)
Q Consensus       189 ~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~--------~~~~d~~G~t~Lh  256 (523)
                           ..+|   .+++.+|+++    -..+..+.|+|-.|++.|..++++.|++. .-+        -..++-.+-+|||
T Consensus       124 -----qhgh---~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plH  194 (854)
T KOG0507|consen  124 -----QHGH---LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLH  194 (854)
T ss_pred             -----hhcc---hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcc
Confidence                 2334   4489999988    34567899999999999999999999876 211        1234567889999


Q ss_pred             HHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-c
Q 041922          257 LAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-F  335 (523)
Q Consensus       257 ~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~  335 (523)
                      +|+++|+.++++.|++.|.       ++|.+.++| |+||-|+..|..+++..                   ++..+. .
T Consensus       195 laakngh~~~~~~ll~ag~-------din~~t~~g-talheaalcgk~evvr~-------------------ll~~gin~  247 (854)
T KOG0507|consen  195 LAAKNGHVECMQALLEAGF-------DINYTTEDG-TALHEAALCGKAEVVRF-------------------LLEIGINT  247 (854)
T ss_pred             hhhhcchHHHHHHHHhcCC-------Ccccccccc-hhhhhHhhcCcchhhhH-------------------HHhhcccc
Confidence            9999999999999999998       999888877 89999999999887632                   222222 4


Q ss_pred             cccCCCCCChhHHhhhhhhhHH
Q 041922          336 LGYNNKGKTPKEIFTKTHKELV  357 (523)
Q Consensus       336 ~~~n~~G~Tpl~la~~~~~~l~  357 (523)
                      .++|.+|+|++|+..+...++.
T Consensus       248 h~~n~~~qtaldil~d~~~~~~  269 (854)
T KOG0507|consen  248 HIKNQHGQTALDIIIDLQENRR  269 (854)
T ss_pred             ccccccchHHHHHHHhcchhhh
Confidence            8999999999999887655443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=3e-19  Score=174.13  Aligned_cols=201  Identities=17%  Similarity=0.197  Sum_probs=148.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCC
Q 041922           39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGN  118 (523)
Q Consensus        39 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~  118 (523)
                      -.+--|+..|..+-|+.|+..+.     .++..|.+|.|+||-+|...+.+||++|+++|+++                 
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga-----~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-----------------   99 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGA-----SPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-----------------   99 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCC-----CccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-----------------
Confidence            34566889999999999998763     36999999999999999999999999999998766                 


Q ss_pred             cccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhh
Q 041922          119 LEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT  198 (523)
Q Consensus       119 ~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (523)
                                       |..|.+||||||.|+.                                           .+| 
T Consensus       100 -----------------n~~d~e~wtPlhaaas-------------------------------------------cg~-  118 (527)
T KOG0505|consen  100 -----------------NAQDNEGWTPLHAAAS-------------------------------------------CGY-  118 (527)
T ss_pred             -----------------cccccccCCcchhhcc-------------------------------------------ccc-
Confidence                             7788999999997762                                           111 


Q ss_pred             HHHHHHHHHHhc----ccccCCCChHH----------------------HHHHHcC-hH---HHHHHHHhhCCCcccccc
Q 041922          199 AAVQELKFMKKK----DQQSGRKATPI----------------------LIAAKMG-VT---EMVEKILDTIPVAIHDLD  248 (523)
Q Consensus       199 ~~~~~v~~Ll~~----~~~~~~g~tpL----------------------h~Aa~~g-~~---~~v~~Ll~~~~~~~~~~d  248 (523)
                        +.++++|+.+    ...+.+|..|+                      .-|++.- ..   +=++..+. .|...+..+
T Consensus       119 --~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~  195 (527)
T KOG0505|consen  119 --LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-AGAELDARH  195 (527)
T ss_pred             --HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-ccccccccc
Confidence              1244444433    11111111111                      1111111 11   11223344 378888888


Q ss_pred             cCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHh
Q 041922          249 SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKE  328 (523)
Q Consensus       249 ~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~  328 (523)
                      ..|.|.||+|+.+|..++.++|++.|.       +++.+|.+|+||||.|+..|..+.+                   +.
T Consensus       196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~-------~~~~~D~dgWtPlHAAA~Wg~~~~~-------------------el  249 (527)
T KOG0505|consen  196 ARGATALHVAAANGYTEVAALLLQAGY-------SVNIKDYDGWTPLHAAAHWGQEDAC-------------------EL  249 (527)
T ss_pred             cccchHHHHHHhhhHHHHHHHHHHhcc-------CcccccccCCCcccHHHHhhhHhHH-------------------HH
Confidence            889999999999999999999999999       9999999999999999999986643                   11


Q ss_pred             hCCccc-ccccCCCCCChhHHhhh
Q 041922          329 SMPRYF-FLGYNNKGKTPKEIFTK  351 (523)
Q Consensus       329 ~~~~~~-~~~~n~~G~Tpl~la~~  351 (523)
                      ++..++ .+.++..|+||+|++.+
T Consensus       250 L~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  250 LVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHhhcccchhhhcCCCCccchhh
Confidence            222222 58889999999999987

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=5.9e-19  Score=156.29  Aligned_cols=134  Identities=19%  Similarity=0.186  Sum_probs=112.0

Q ss_pred             chHHHHHHHcCCHHHHHHHH---HcCCCccccccCCCCCcHHHHHHHcCCHHH---HHHHHHHhcccccccccccc-cCC
Q 041922            3 VNCLSKFAMRGQWDNFVQAY---ENNPMSREAKLTRSGDTALHIAAAAGQTNI---VSELVEIMGENASNVLKIQN-DRG   75 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll---~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~---v~~Ll~~~~~~~~~~~~~~d-~~G   75 (523)
                      +.++|.|++.|+.+.+++++   .++ +...+..|..|+||||+|+..|+.+.   +++|++.|.     +++.+| ..|
T Consensus        21 ~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga-----din~~d~~~g   94 (166)
T PHA02743         21 QNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA-----DINARELGTG   94 (166)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC-----CCCCCCCCCC
Confidence            56899999999997666543   222 55677889999999999999998765   789998764     589998 589


Q ss_pred             ChHHhHHHHcCCHHHHHHHHh-cCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCC
Q 041922           76 DTALHLAAALGNEAMCHCMAS-KDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDG  154 (523)
Q Consensus        76 ~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~  154 (523)
                      +||||+|+..|+.+++++|++ .|+++                                                     
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~-----------------------------------------------------  121 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNL-----------------------------------------------------  121 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCc-----------------------------------------------------
Confidence            999999999999999999995 67655                                                     


Q ss_pred             CCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHH
Q 041922          155 DTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVE  234 (523)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~  234 (523)
                                                                              +.++..|.||||+|+..|+.++++
T Consensus       122 --------------------------------------------------------~~~d~~g~tpL~~A~~~~~~~iv~  145 (166)
T PHA02743        122 --------------------------------------------------------GAINYQHETAYHIAYKMRDRRMME  145 (166)
T ss_pred             --------------------------------------------------------cCcCCCCCCHHHHHHHcCCHHHHH
Confidence                                                                    234456899999999999999999


Q ss_pred             HHHhhCCCcccccccCCC
Q 041922          235 KILDTIPVAIHDLDSEKK  252 (523)
Q Consensus       235 ~Ll~~~~~~~~~~d~~G~  252 (523)
                      +|+++ +++++.++..|.
T Consensus       146 ~Ll~~-ga~~~~~~~~~~  162 (166)
T PHA02743        146 ILRAN-GAVCDDPLSIGL  162 (166)
T ss_pred             HHHHc-CCCCCCcccCCc
Confidence            99997 899999988775

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=3e-19  Score=148.71  Aligned_cols=131  Identities=17%  Similarity=0.039  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHhc-----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHh
Q 041922          198 TAAVQELKFMKKK-----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLD  272 (523)
Q Consensus       198 ~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  272 (523)
                      ...+..|+.||+.     |.+|.+|+||||.|+++|+.++++.|+.. |++.+.+...|+||||-||+-++.+++..|++
T Consensus        73 ~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~~va~~LLq  151 (228)
T KOG0512|consen   73 KNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQ  151 (228)
T ss_pred             hccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccchhHHHHHHh
Confidence            3345678888877     88999999999999999999999999996 99999999999999999999999999999999


Q ss_pred             ccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCcccccccCCCCCChhHHhhhh
Q 041922          273 RKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFTKT  352 (523)
Q Consensus       273 ~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~~~~~n~~G~Tpl~la~~~  352 (523)
                      +|+       ++|++.+.-.||||+||...+...-             ..+-.....+.   ...+|+.+.||+++|...
T Consensus       152 hga-------DVnA~t~g~ltpLhlaa~~rn~r~t-------------~~~Ll~dryi~---pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  152 HGA-------DVNAQTKGLLTPLHLAAGNRNSRDT-------------LELLLHDRYIH---PGLKNNLEETAFDIARRT  208 (228)
T ss_pred             ccC-------cccccccccchhhHHhhcccchHHH-------------HHHHhhccccC---hhhhcCccchHHHHHHHh
Confidence            999       9999999999999999988874321             00001111112   368899999999999865

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=5.8e-19  Score=147.01  Aligned_cols=145  Identities=19%  Similarity=0.183  Sum_probs=124.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCC
Q 041922           39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGN  118 (523)
Q Consensus        39 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~  118 (523)
                      -.+.+|+..+....|+.||+..+    ..+|.+|.+|.||||-|+.+||.+||+.|+..|++..                
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~a----n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~----------------  124 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKA----NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE----------------  124 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcc----ccccccccccccHHHHHHhcCchHHHHHHHHccCCcc----------------
Confidence            34678999999999999999754    4699999999999999999999999999999998762                


Q ss_pred             cccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhh
Q 041922          119 LEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT  198 (523)
Q Consensus       119 ~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (523)
                                                                                                      
T Consensus       125 --------------------------------------------------------------------------------  124 (228)
T KOG0512|consen  125 --------------------------------------------------------------------------------  124 (228)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCch-hHHHHHHhccccC
Q 041922          199 AAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQT-GIYKLLLDRKMLG  277 (523)
Q Consensus       199 ~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~-~iv~~Ll~~~~~~  277 (523)
                                   .+...|+||||-||+.++.+++..||++ |+|+|.......||||+||.+++. ..+.+|+..... 
T Consensus       125 -------------a~T~~GWTPLhSAckWnN~~va~~LLqh-gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi-  189 (228)
T KOG0512|consen  125 -------------AKTNEGWTPLHSACKWNNFEVAGRLLQH-GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYI-  189 (228)
T ss_pred             -------------cccccCccchhhhhcccchhHHHHHHhc-cCcccccccccchhhHHhhcccchHHHHHHHhhcccc-
Confidence                         2334689999999999999999999997 999999999999999999998764 566777655443 


Q ss_pred             CccccccccccCCCCcHhHHHHHhCC
Q 041922          278 ESDLNIFEHVDIKGNSALHLAAKFGE  303 (523)
Q Consensus       278 ~~~~~~in~~d~~G~TpLH~Aa~~~~  303 (523)
                           ....+++.|.||+.+|-+-+-
T Consensus       190 -----~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  190 -----HPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             -----ChhhhcCccchHHHHHHHhhh
Confidence                 666788999999999988765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=1.2e-18  Score=166.11  Aligned_cols=141  Identities=12%  Similarity=0.075  Sum_probs=114.7

Q ss_pred             ccCCCCCc-HHHHHHHcCCHHHHHHHHHHhccccccccccc----ccCCChHHhHHHHcCCHHHHHHHHhcCcccccccC
Q 041922           32 KLTRSGDT-ALHIAAAAGQTNIVSELVEIMGENASNVLKIQ----NDRGDTALHLAAALGNEAMCHCMASKDRELISAAD  106 (523)
Q Consensus        32 ~~~~~g~T-~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~----d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~  106 (523)
                      .+|..|.| +||.|+..|+.++++.|++.|+     +++.+    +..|.||||+|++.|+.+++++|+++|++++..  
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GA-----diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~--   99 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGA-----DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRY--   99 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCC-----CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcc--
Confidence            45666765 5666777799999999999875     47776    468999999999999999999999999877321  


Q ss_pred             CCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhh
Q 041922          107 EGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVH  186 (523)
Q Consensus       107 ~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (523)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (300)
T PHA02884        100 --------------------------------------------------------------------------------   99 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhH
Q 041922          187 NKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGI  266 (523)
Q Consensus       187 ~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~i  266 (523)
                                                .+..|.||||.|+..|+.+++++|++. |++++.+|..|.||||+|++.++.++
T Consensus       100 --------------------------~~~~g~TpLh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~~~~~~  152 (300)
T PHA02884        100 --------------------------AEEAKITPLYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMICNNFL  152 (300)
T ss_pred             --------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCChhH
Confidence                                      122589999999999999999999997 89999999999999999999888887


Q ss_pred             HHHHHhccccCCccccccccccCCCCcHhHHH
Q 041922          267 YKLLLDRKMLGESDLNIFEHVDIKGNSALHLA  298 (523)
Q Consensus       267 v~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~A  298 (523)
                      +..+.  |.          ..+..|.+|++++
T Consensus       153 ~~~~~--~~----------~~~~~~~~~~~~~  172 (300)
T PHA02884        153 AFMIC--DN----------EISNFYKHPKKIL  172 (300)
T ss_pred             HHHhc--CC----------cccccccChhhhh
Confidence            75554  32          2466778888875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=9.1e-19  Score=162.29  Aligned_cols=155  Identities=21%  Similarity=0.272  Sum_probs=138.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHc-----CCHHHHHHHHHHhcccccccccccc-cCCChH
Q 041922            5 CLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAA-----GQTNIVSELVEIMGENASNVLKIQN-DRGDTA   78 (523)
Q Consensus         5 ~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~~~~d-~~G~Tp   78 (523)
                      .||.++..+|++.|+.||+.. -.++++++.-|+||.++|+..     .+.++|+.|...|      ++|++- ..|+|+
T Consensus       271 ALHYsVSHaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg------nVNaKAsQ~gQTA  343 (452)
T KOG0514|consen  271 ALHYAVSHANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG------DVNAKASQHGQTA  343 (452)
T ss_pred             eeeeeecccchHHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc------Ccchhhhhhcchh
Confidence            588999999999999999985 478899999999999999864     4678999999875      377764 679999


Q ss_pred             HhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCcc
Q 041922           79 LHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFS  158 (523)
Q Consensus        79 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~  158 (523)
                      |++|+..|+.++|+.|+..|+|+                                                         
T Consensus       344 LMLAVSHGr~d~vk~LLacgAdV---------------------------------------------------------  366 (452)
T KOG0514|consen  344 LMLAVSHGRVDMVKALLACGADV---------------------------------------------------------  366 (452)
T ss_pred             hhhhhhcCcHHHHHHHHHccCCC---------------------------------------------------------
Confidence            99999999999999999999887                                                         


Q ss_pred             CCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHh
Q 041922          159 VPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILD  238 (523)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~  238 (523)
                                                                          |.+|.+|.|+|++||.+||.|+++.||.
T Consensus       367 ----------------------------------------------------NiQDdDGSTALMCA~EHGhkEivklLLA  394 (452)
T KOG0514|consen  367 ----------------------------------------------------NIQDDDGSTALMCAAEHGHKEIVKLLLA  394 (452)
T ss_pred             ----------------------------------------------------ccccCCccHHHhhhhhhChHHHHHHHhc
Confidence                                                                3466789999999999999999999999


Q ss_pred             hCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          239 TIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       239 ~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      ...+|+...|.+|-|+|.+|-+.||.+|.-.|..+-.
T Consensus       395 ~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n  431 (452)
T KOG0514|consen  395 VPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHMN  431 (452)
T ss_pred             cCcccceeecCCCchhhhhHHhcCchHHHHHHHHHHH
Confidence            9889999999999999999999999999999887654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=3.6e-19  Score=156.16  Aligned_cols=86  Identities=9%  Similarity=0.049  Sum_probs=74.9

Q ss_pred             ccCCCChHHHHHHHcChH---HHHHHHHhhCCCcccccc-cCCCcHHHHHHHcCchhHHHHHHhc-cccCCccccccccc
Q 041922          213 QSGRKATPILIAAKMGVT---EMVEKILDTIPVAIHDLD-SEKKNLVLLAVENRQTGIYKLLLDR-KMLGESDLNIFEHV  287 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~~~~~in~~  287 (523)
                      .|.+|.||||+|+..|+.   +++++|++. |++++.+| .+|+||||+|+..++.+++++|+++ |+       +++.+
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~-------d~n~~  122 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGV-------NMEIL  122 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC-------CCccc
Confidence            455678888888888876   468889986 89999998 5999999999999999999999985 77       99999


Q ss_pred             cCCCCcHhHHHHHhCCCCC
Q 041922          288 DIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       288 d~~G~TpLH~Aa~~~~~~~  306 (523)
                      |..|+||||+|+..++.++
T Consensus       123 ~~~g~tpL~~A~~~~~~~i  141 (154)
T PHA02736        123 NYAFKTPYYVACERHDAKM  141 (154)
T ss_pred             cCCCCCHHHHHHHcCCHHH
Confidence            9999999999999988654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=3.2e-18  Score=163.27  Aligned_cols=84  Identities=11%  Similarity=0.073  Sum_probs=77.9

Q ss_pred             CCCChHHHHHHHcChHHHHHHHHhhCCCcccccc-cCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCc
Q 041922          215 GRKATPILIAAKMGVTEMVEKILDTIPVAIHDLD-SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNS  293 (523)
Q Consensus       215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~T  293 (523)
                      ..|.||||+|+..|+.+++++|+++ |++++..+ ..|.||||.|+.+++.+++++|+++|+       +++.+|.+|+|
T Consensus        68 ~~g~TpLh~Aa~~~~~eivklLL~~-GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GA-------din~kd~~G~T  139 (300)
T PHA02884         68 NSKTNPLIYAIDCDNDDAAKLLIRY-GADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGA-------DINIQTNDMVT  139 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc-CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-------CCCCCCCCCCC
Confidence            4699999999999999999999997 99999864 689999999999999999999999999       99999999999


Q ss_pred             HhHHHHHhCCCCC
Q 041922          294 ALHLAAKFGEYGP  306 (523)
Q Consensus       294 pLH~Aa~~~~~~~  306 (523)
                      |||+|++.++.++
T Consensus       140 pL~~A~~~~~~~~  152 (300)
T PHA02884        140 PIELALMICNNFL  152 (300)
T ss_pred             HHHHHHHhCChhH
Confidence            9999999877543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.76  E-value=1.8e-18  Score=179.22  Aligned_cols=257  Identities=17%  Similarity=0.106  Sum_probs=207.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc--e
Q 041922           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA--N  111 (523)
Q Consensus        34 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~--l  111 (523)
                      ..+-+|+|-.||..||.|.|+.|+.+|+     .+..+|+.|.+||.+|+..||..+|+.|+++.+++....++.+.  +
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rga-----niehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGA-----NIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcc-----cccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceE
Confidence            3456799999999999999999999875     48899999999999999999999999999999999887777666  5


Q ss_pred             eEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCC
Q 041922          112 CSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDG  190 (523)
Q Consensus       112 ~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (523)
                      -++...+..++ ++|++.   +++-..++-...|||..|.+                                       
T Consensus       829 Slacsggr~~vvelLl~~---gankehrnvsDytPlsla~S---------------------------------------  866 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNA---GANKEHRNVSDYTPLSLARS---------------------------------------  866 (2131)
T ss_pred             EEecCCCcchHHHHHHHh---hccccccchhhcCchhhhcC---------------------------------------
Confidence            55555555554 888887   77778888889999987763                                       


Q ss_pred             CcchhhhhHHHHHHHHHHhc------ccccCCCChHHHHHHHcChHHHHHHHHhhCCCccccc-ccCCCcHHHHHHHcCc
Q 041922          191 NARDETATAAVQELKFMKKK------DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDL-DSEKKNLVLLAVENRQ  263 (523)
Q Consensus       191 ~~~~~~~~~~~~~v~~Ll~~------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~G~t~Lh~A~~~~~  263 (523)
                             .+..++++.|+.+      ....+.|..||++|+.+||.+.++.||+. |.++|.. ..+.+|+|-+|+..|+
T Consensus       867 -------ggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~-gsdiNaqIeTNrnTaltla~fqgr  938 (2131)
T KOG4369|consen  867 -------GGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP-GSDINAQIETNRNTALTLALFQGR  938 (2131)
T ss_pred             -------cchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc-cchhccccccccccceeeccccCc
Confidence                   1235588888877      22346799999999999999999999997 8888875 4678999999999999


Q ss_pred             hhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccC---Ccchh-------------hhHHHhHHHHHHH
Q 041922          264 TGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRI---PGAAL-------------QMQWEIKWYKFVK  327 (523)
Q Consensus       264 ~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~---~g~~l-------------~~~~~~~~~~~v~  327 (523)
                      .+++.+||...+       ++..+-+.|-|||.-++..|..++-.+   .|++.             .+..+--.-+.+.
T Consensus       939 ~evv~lLLa~~a-------nvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~ 1011 (2131)
T KOG4369|consen  939 PEVVFLLLAAQA-------NVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVP 1011 (2131)
T ss_pred             chHHHHHHHHhh-------hhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhH
Confidence            999999999999       888999999999999999998765321   12222             1112222234577


Q ss_pred             hhCCccc-ccccCCCCCChhHHhhhh
Q 041922          328 ESMPRYF-FLGYNNKGKTPKEIFTKT  352 (523)
Q Consensus       328 ~~~~~~~-~~~~n~~G~Tpl~la~~~  352 (523)
                      .++..++ +.++|++|.|+|-++..-
T Consensus      1012 ~lln~~atv~v~NkkG~T~Lwla~~G 1037 (2131)
T KOG4369|consen 1012 KLLNGDATVRVPNKKGCTVLWLASAG 1037 (2131)
T ss_pred             HhhCCccceecccCCCCcccchhccC
Confidence            7777666 899999999999888753

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.74  E-value=1.7e-18  Score=155.47  Aligned_cols=140  Identities=20%  Similarity=0.195  Sum_probs=121.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      +.++..+++|+.-.|+..|+.. .-+.|.-|..|.+|||+||+.|+..+|+.|+.+|+.     +|..|.-.+||||+|+
T Consensus         2 edif~wcregna~qvrlwld~t-ehdln~gddhgfsplhwaakegh~aivemll~rgar-----vn~tnmgddtplhlaa   75 (448)
T KOG0195|consen    2 EDIFGWCREGNAFQVRLWLDDT-EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-----VNSTNMGDDTPLHLAA   75 (448)
T ss_pred             chhhhhhhcCCeEEEEEEecCc-ccccccccccCcchhhhhhhcccHHHHHHHHhcccc-----cccccCCCCcchhhhh
Confidence            3577888999988888888765 456677889999999999999999999999999864     8999998999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..||-++|+.|+++.+|++                                                             
T Consensus        76 ahghrdivqkll~~kadvn-------------------------------------------------------------   94 (448)
T KOG0195|consen   76 AHGHRDIVQKLLSRKADVN-------------------------------------------------------------   94 (448)
T ss_pred             hcccHHHHHHHHHHhcccc-------------------------------------------------------------
Confidence            9999999999999887763                                                             


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCc
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVA  243 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  243 (523)
                                                                      ..+..|.||||+||..|.-.+.+-|+. +|+.
T Consensus        95 ------------------------------------------------avnehgntplhyacfwgydqiaedli~-~ga~  125 (448)
T KOG0195|consen   95 ------------------------------------------------AVNEHGNTPLHYACFWGYDQIAEDLIS-CGAA  125 (448)
T ss_pred             ------------------------------------------------hhhccCCCchhhhhhhcHHHHHHHHHh-ccce
Confidence                                                            234458899999999999999999998 4999


Q ss_pred             ccccccCCCcHHHHHH
Q 041922          244 IHDLDSEKKNLVLLAV  259 (523)
Q Consensus       244 ~~~~d~~G~t~Lh~A~  259 (523)
                      ++..+++|.|||..|-
T Consensus       126 v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  126 VNICNKKGMTPLDKAK  141 (448)
T ss_pred             eeecccCCCCchhhhc
Confidence            9999999999998774

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.73  E-value=7.2e-18  Score=151.55  Aligned_cols=117  Identities=22%  Similarity=0.272  Sum_probs=107.2

Q ss_pred             ccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCc
Q 041922           66 NVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSS  145 (523)
Q Consensus        66 ~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tp  145 (523)
                      .++|.-|..|.+|||+||+.|+..+++.|+.+|+.++.                                          
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~------------------------------------------   62 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS------------------------------------------   62 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhccccccc------------------------------------------
Confidence            56899999999999999999999999999999987732                                          


Q ss_pred             cccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHH
Q 041922          146 RDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAA  225 (523)
Q Consensus       146 Lh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa  225 (523)
                                                                                         .+....||||+|+
T Consensus        63 -------------------------------------------------------------------tnmgddtplhlaa   75 (448)
T KOG0195|consen   63 -------------------------------------------------------------------TNMGDDTPLHLAA   75 (448)
T ss_pred             -------------------------------------------------------------------ccCCCCcchhhhh
Confidence                                                                               2223579999999


Q ss_pred             HcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHH
Q 041922          226 KMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAA  299 (523)
Q Consensus       226 ~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa  299 (523)
                      .+||-++|+.||+. .+|+|.++..|+||||+||.-|+..+.+-|+..|+       .++..+++|.|||.-|-
T Consensus        76 ahghrdivqkll~~-kadvnavnehgntplhyacfwgydqiaedli~~ga-------~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   76 AHGHRDIVQKLLSR-KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGA-------AVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hcccHHHHHHHHHH-hcccchhhccCCCchhhhhhhcHHHHHHHHHhccc-------eeeecccCCCCchhhhc
Confidence            99999999999997 89999999999999999999999999999999999       99999999999998763

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.71  E-value=7.9e-18  Score=174.55  Aligned_cols=271  Identities=15%  Similarity=0.131  Sum_probs=200.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccc-cccCCChHHhHHH
Q 041922            5 CLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI-QNDRGDTALHLAA   83 (523)
Q Consensus         5 ~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-~d~~G~TpLh~A~   83 (523)
                      +|-.|+..|+.|.+..++.+  +.++..+|+.|.+||.+|+..||..+|+.|+....     +++. .|..++|+|-+||
T Consensus       760 ~LT~acaggh~e~vellv~r--ganiehrdkkgf~plImaatagh~tvV~~llk~ha-----~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  760 NLTSACAGGHREEVELLVVR--GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHA-----DVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             cccccccCccHHHHHHHHHh--cccccccccccchhhhhhcccCchHHHHHHHhhhh-----hhhhhcccccCceEEEec
Confidence            45678888999999999888  77788899999999999999999999999998643     3544 5788999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCccc-chhhhhhcCCccCCccC--CCCCCCccccCCCCCCC--Cc
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLED-KEHHREKRGTYMGLSSN--DDHGKSSRDSRPDKDGD--TF  157 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~-v~~l~~~~~~~~~l~~~--d~~g~tpLh~a~~~~~~--~~  157 (523)
                      ..|+.++|++||..|++-..+.-.+-+ +-++...++.+ +..|+..   |.++|.+  .+.|.+||..|.-....  .+
T Consensus       833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~---GseInSrtgSklgisPLmlatmngh~~at~  909 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSS---GSEINSRTGSKLGISPLMLATMNGHQAATL  909 (2131)
T ss_pred             CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhc---ccccccccccccCcchhhhhhhccccHHHH
Confidence            999999999999999876544444444 55666666665 4777877   7777765  45788999977632111  12


Q ss_pred             cCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHH
Q 041922          158 SVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMV  233 (523)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v  233 (523)
                      .+++.+.+.+ .+.+......+             ..+...+.-+++.+||..    ..+-+.|.|||+.++..|.+|+=
T Consensus       910 ~ll~~gsdiN-aqIeTNrnTal-------------tla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg  975 (2131)
T KOG4369|consen  910 SLLQPGSDIN-AQIETNRNTAL-------------TLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVG  975 (2131)
T ss_pred             HHhcccchhc-cccccccccce-------------eeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccc
Confidence            2233322211 00000000000             022223345688888877    34556799999999999999999


Q ss_pred             HHHHhhCCCcccccc--cCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          234 EKILDTIPVAIHDLD--SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       234 ~~Ll~~~~~~~~~~d--~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      +.||.. |+|.|..-  ....|+|-+++..||.+.++.|+...+       .+..+|++|+|+|.+|+.-|+...+
T Consensus       976 ~~li~~-gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~a-------tv~v~NkkG~T~Lwla~~Gg~lss~ 1043 (2131)
T KOG4369|consen  976 NLLIAA-GADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDA-------TVRVPNKKGCTVLWLASAGGALSSC 1043 (2131)
T ss_pred             hhhhhc-ccccccCCCCCcCCccceeecCCCchhhhHHhhCCcc-------ceecccCCCCcccchhccCCccccc
Confidence            999997 88887643  556789999999999999999999888       8889999999999999988886543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=8.5e-16  Score=129.25  Aligned_cols=124  Identities=27%  Similarity=0.423  Sum_probs=103.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCcee
Q 041922           33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANC  112 (523)
Q Consensus        33 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~  112 (523)
                      +|.+|.||||+|+..|+.+++++|++.+.     ..+.++..|.||||.|+..++.+++++|++.++++           
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~-----~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-----------   66 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGA-----DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-----------   66 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCC-----CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-----------
Confidence            46789999999999999999999998764     24788889999999999999999999999887533           


Q ss_pred             EeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCc
Q 041922          113 SWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNA  192 (523)
Q Consensus       113 l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (523)
                                                                                                      
T Consensus        67 --------------------------------------------------------------------------------   66 (126)
T cd00204          67 --------------------------------------------------------------------------------   66 (126)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHH
Q 041922          193 RDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL  271 (523)
Q Consensus       193 ~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  271 (523)
                                        +..+..|.||+|+|+..++.+++++|+++ +.+++..|..|.||+|.|+..++.+++++|+
T Consensus        67 ------------------~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          67 ------------------NARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ------------------cccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                              11233578999999999999999999986 6788888899999999999999999888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.65  E-value=7.3e-16  Score=121.62  Aligned_cols=64  Identities=27%  Similarity=0.295  Sum_probs=58.2

Q ss_pred             CChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCcccccccccc
Q 041922          217 KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVD  288 (523)
Q Consensus       217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d  288 (523)
                      |.||||+|+..|+.+++++|++. |.+++.+|.+|+||||+|+.+|+.+++++|+++|+       ++|.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-------~~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLEN-GADINSQDKNGNTALHYAAENGNLEIVKLLLEHGA-------DVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHT-TTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT--------TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHh-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCCCcC
Confidence            68899999999999999999997 89999999999999999999999999999999999       888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.65  E-value=8.6e-16  Score=121.22  Aligned_cols=87  Identities=30%  Similarity=0.340  Sum_probs=76.7

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHc
Q 041922            6 LSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAAL   85 (523)
Q Consensus         6 L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~   85 (523)
                      ||.|+..|+.+.++.+++..  .+.+.    |+||||+|+..|+.+++++|++.+.     +++.+|.+|+||||+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~--~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG--ADINL----GNTALHYAAENGNLEIVKLLLENGA-----DINSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT--STTTS----SSBHHHHHHHTTTHHHHHHHHHTTT-----CTT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCc--CCCCC----CCCHHHHHHHcCCHHHHHHHHHhcc-----cccccCCCCCCHHHHHHHc
Confidence            78999999999999999974  33322    9999999999999999999999864     5899999999999999999


Q ss_pred             CCHHHHHHHHhcCccccc
Q 041922           86 GNEAMCHCMASKDRELIS  103 (523)
Q Consensus        86 g~~~iv~~Ll~~~~~~~~  103 (523)
                      |+.+++++|+++|++++.
T Consensus        70 ~~~~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADVNI   87 (89)
T ss_dssp             THHHHHHHHHHTTT-TTS
T ss_pred             CCHHHHHHHHHcCCCCCC
Confidence            999999999999998754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=3.9e-15  Score=125.15  Aligned_cols=84  Identities=31%  Similarity=0.407  Sum_probs=77.1

Q ss_pred             cCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCc
Q 041922          214 SGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNS  293 (523)
Q Consensus       214 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~T  293 (523)
                      +..|.||+|.|+..++.++++.|++. +.+++..+..|.||+|+|+..++.+++++|++++.       +++..|..|.|
T Consensus        37 ~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~-------~~~~~~~~~~~  108 (126)
T cd00204          37 DNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA-------DVNARDKDGRT  108 (126)
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC-------CCcccCCCCCC
Confidence            44689999999999999999999997 67889999999999999999999999999999997       88999999999


Q ss_pred             HhHHHHHhCCCC
Q 041922          294 ALHLAAKFGEYG  305 (523)
Q Consensus       294 pLH~Aa~~~~~~  305 (523)
                      |+|+|...++.+
T Consensus       109 ~l~~~~~~~~~~  120 (126)
T cd00204         109 PLHLAAKNGHLE  120 (126)
T ss_pred             HHHHHHhcCCHH
Confidence            999999986643

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.56  E-value=3.6e-14  Score=145.58  Aligned_cols=216  Identities=18%  Similarity=0.177  Sum_probs=145.8

Q ss_pred             CchHH-HHHHH---cCCHHHHHHHHHcCCCccccc---cCCCCCcHHHHHHHcCCHHHHHHHHHHhccc----ccccccc
Q 041922            2 EVNCL-SKFAM---RGQWDNFVQAYENNPMSREAK---LTRSGDTALHIAAAAGQTNIVSELVEIMGEN----ASNVLKI   70 (523)
Q Consensus         2 ~~~~L-~~Aa~---~g~~~~v~~ll~~~~~~~~~~---~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~----~~~~~~~   70 (523)
                      +|+.+ |.|..   .+..+.++.|++-.|+...+.   ....|.||||+|+.+.+.++|+.|++.|++-    ..+....
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~  221 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCP  221 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCc
Confidence            35554 44544   345578888888887654332   2446999999999999999999999998741    0111111


Q ss_pred             cc--------------cCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCc
Q 041922           71 QN--------------DRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLS  136 (523)
Q Consensus        71 ~d--------------~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~  136 (523)
                      .|              ..|+.||.+||.-++.|++++|+++|+|+                                   
T Consensus       222 ~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-----------------------------------  266 (782)
T KOG3676|consen  222 DDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-----------------------------------  266 (782)
T ss_pred             ccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-----------------------------------
Confidence            12              24789999999999999999999998776                                   


Q ss_pred             cCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCC
Q 041922          137 SNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGR  216 (523)
Q Consensus       137 ~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~  216 (523)
                                                                                                +.+|..
T Consensus       267 --------------------------------------------------------------------------~aqDS~  272 (782)
T KOG3676|consen  267 --------------------------------------------------------------------------NAQDSN  272 (782)
T ss_pred             --------------------------------------------------------------------------CccccC
Confidence                                                                                      334556


Q ss_pred             CChHHHHHHHcChHHHHHHHHhhCCCc--ccccccCCCcHHHHHHHcCchhHHHHHHhccccCCcccc-------ccccc
Q 041922          217 KATPILIAAKMGVTEMVEKILDTIPVA--IHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLN-------IFEHV  287 (523)
Q Consensus       217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~-------~in~~  287 (523)
                      |+|.||..+.+-..++-..+|+. |++  ...+|+.|-|||.+|++-|+.++++.+++.....++...       +++..
T Consensus       273 GNTVLH~lVi~~~~~My~~~L~~-ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~i  351 (782)
T KOG3676|consen  273 GNTVLHMLVIHFVTEMYDLALEL-GANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSI  351 (782)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhc-CCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhc
Confidence            67777777777777888888886 677  788899999999999999999999999988211100000       34444


Q ss_pred             cC--CCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHH
Q 041922          288 DI--KGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVK  327 (523)
Q Consensus       288 d~--~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~  327 (523)
                      |.  +-++.|-+.+.....+-..+....++.-.+.+|-...+
T Consensus       352 DT~~n~~SvLeivvyg~~~eHl~Ll~~~i~~LL~~KW~~f~k  393 (782)
T KOG3676|consen  352 DTIGNENSVLEIVVYGIKNEHLELLDGPIEELLEDKWKAFGK  393 (782)
T ss_pred             ccccchhhhhhhhhcCCcHHHHHHHhHHHHHHHHHHHHHHhH
Confidence            42  56677777775532221111123445555556655433

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.55  E-value=1.8e-14  Score=107.39  Aligned_cols=96  Identities=21%  Similarity=0.182  Sum_probs=85.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHh
Q 041922            1 MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALH   80 (523)
Q Consensus         1 ~~~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh   80 (523)
                      |-...+..++++|.++.|+..+.+  +.++|.+ ..|+||||+||.+|+.+++++|+..|+     .++.+|+.|-|||-
T Consensus         1 m~d~~~~W~vkNG~~DeVk~~v~~--g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA-----~i~~kDKygITPLL   72 (117)
T KOG4214|consen    1 MGDMSVAWNVKNGEIDEVKQSVNE--GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGA-----NIQDKDKYGITPLL   72 (117)
T ss_pred             CcchhHhhhhccCcHHHHHHHHHc--cccHHHH-hCCcccchHhhhcchHHHHHHHHHhcc-----ccCCccccCCcHHH
Confidence            445677889999999999999998  6677654 489999999999999999999999975     49999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCcccccc
Q 041922           81 LAAALGNEAMCHCMASKDRELISA  104 (523)
Q Consensus        81 ~A~~~g~~~iv~~Ll~~~~~~~~~  104 (523)
                      -|+..||.++|++|++.|++-...
T Consensus        73 sAvwEGH~~cVklLL~~GAdrt~~   96 (117)
T KOG4214|consen   73 SAVWEGHRDCVKLLLQNGADRTIH   96 (117)
T ss_pred             HHHHHhhHHHHHHHHHcCccccee
Confidence            999999999999999999876443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=1.9e-13  Score=127.77  Aligned_cols=130  Identities=28%  Similarity=0.325  Sum_probs=116.5

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCC-----HHHHHHHHhcCcc--ccc
Q 041922           31 AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN-----EAMCHCMASKDRE--LIS  103 (523)
Q Consensus        31 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~-----~~iv~~Ll~~~~~--~~~  103 (523)
                      ...+..+.+++|.++..+..+++++++..+.     +++.+|..|.||||+|+..|+     .+++++|++.|++  .. 
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~-  140 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGA-----DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN-  140 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCC-----CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCc-
Confidence            4556678999999999999999999998764     479999999999999999999     9999999999972  21 


Q ss_pred             ccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHH
Q 041922          104 AADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAV  183 (523)
Q Consensus       104 ~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  183 (523)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (235)
T COG0666         141 --------------------------------------------------------------------------------  140 (235)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCc
Q 041922          184 AVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQ  263 (523)
Q Consensus       184 ~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  263 (523)
                                                 +.+|..|.||||+|+..|+.++++.|++. +++++.++..|.|++|.|+..++
T Consensus       141 ---------------------------~~~~~~g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~  192 (235)
T COG0666         141 ---------------------------NLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGR  192 (235)
T ss_pred             ---------------------------cccCCCCCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhcccch
Confidence                                       23466799999999999999999999997 89999999999999999999999


Q ss_pred             hhHHHHHHhcc
Q 041922          264 TGIYKLLLDRK  274 (523)
Q Consensus       264 ~~iv~~Ll~~~  274 (523)
                      .++++.+++.+
T Consensus       193 ~~~~~~l~~~~  203 (235)
T COG0666         193 IELVKLLLDKG  203 (235)
T ss_pred             HHHHHHHHhcC
Confidence            99999999965

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=1.9e-14  Score=102.01  Aligned_cols=56  Identities=21%  Similarity=0.285  Sum_probs=33.8

Q ss_pred             HHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHH
Q 041922          236 ILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLA  298 (523)
Q Consensus       236 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~A  298 (523)
                      ||++.+.+++..|.+|+||||+|+.+|+.+++++|++.|+       +++.+|++|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~-------d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA-------DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC-------CCCCCcCCCCCHHHhC
Confidence            5676568999999999999999999999999999999999       9999999999999997

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.42  E-value=8e-13  Score=98.67  Aligned_cols=73  Identities=23%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             CCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHh
Q 041922          216 RKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSAL  295 (523)
Q Consensus       216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpL  295 (523)
                      .|+||||+|+-.|..+++++|+.. |++++.+|+.|-|||.-|+..||.++|++|+++|+       +-..+-.+|.+.+
T Consensus        33 ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GA-------drt~~~PdG~~~~  104 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGA-------DRTIHAPDGTALI  104 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCc-------ccceeCCCchhHH
Confidence            589999999999999999999997 89999999999999999999999999999999999       6666777787765


Q ss_pred             H
Q 041922          296 H  296 (523)
Q Consensus       296 H  296 (523)
                      .
T Consensus       105 e  105 (117)
T KOG4214|consen  105 E  105 (117)
T ss_pred             h
Confidence            4

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.41  E-value=4.7e-13  Score=94.29  Aligned_cols=54  Identities=30%  Similarity=0.409  Sum_probs=45.6

Q ss_pred             CChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHH
Q 041922          217 KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL  271 (523)
Q Consensus       217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  271 (523)
                      |.||||+|++.|+.+++++|+++ +.+++.+|.+|+||||+|+++|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999998 8999999999999999999999999999986

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.40  E-value=5.4e-13  Score=94.00  Aligned_cols=54  Identities=37%  Similarity=0.479  Sum_probs=44.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHH
Q 041922           37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMA   95 (523)
Q Consensus        37 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll   95 (523)
                      |.||||+||+.|+.+++++|++.+.     +++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~-----din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA-----DINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS-----GTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999999999999864     49999999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.40  E-value=1.7e-12  Score=139.48  Aligned_cols=80  Identities=21%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhc-------cccCCccccccc
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDR-------KMLGESDLNIFE  285 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-------~~~~~~~~~~in  285 (523)
                      +|..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+.+|+.+++++|+++       ++       +.+
T Consensus       111 ~d~~G~TpLh~Aa~~g~~eiv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga-------~~~  182 (664)
T PTZ00322        111 RDYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGA-------NAK  182 (664)
T ss_pred             cCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCC-------CCC
Confidence            455689999999999999999999997 899999999999999999999999999999998       66       788


Q ss_pred             cccCCCCcHhHHHHH
Q 041922          286 HVDIKGNSALHLAAK  300 (523)
Q Consensus       286 ~~d~~G~TpLH~Aa~  300 (523)
                      ..+..|++|+-.+..
T Consensus       183 ~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        183 PDSFTGKPPSLEDSP  197 (664)
T ss_pred             ccccCCCCccchhhh
Confidence            888889888776653

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.40  E-value=6e-12  Score=117.56  Aligned_cols=86  Identities=24%  Similarity=0.224  Sum_probs=78.1

Q ss_pred             ccCCCChHHHHHHHcCh-----HHHHHHHHhhCCC---cccccccCCCcHHHHHHHcCchhHHHHHHhccccCCcccccc
Q 041922          213 QSGRKATPILIAAKMGV-----TEMVEKILDTIPV---AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIF  284 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~-----~~~v~~Ll~~~~~---~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~i  284 (523)
                      ++.+|.||||+|+..|+     .++++.|++. ++   ..+..|.+|+||||+|+..|+.+++++|++.|+       ++
T Consensus       102 ~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~-------~~  173 (235)
T COG0666         102 KDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA-------DP  173 (235)
T ss_pred             ccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCC-------CC
Confidence            44568889999999999     9999999998 56   777779999999999999999999999999999       89


Q ss_pred             ccccCCCCcHhHHHHHhCCCCC
Q 041922          285 EHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       285 n~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      +.+|..|.||+|.|+..++.+.
T Consensus       174 ~~~~~~g~t~l~~a~~~~~~~~  195 (235)
T COG0666         174 NSRNSYGVTALDPAAKNGRIEL  195 (235)
T ss_pred             cccccCCCcchhhhcccchHHH
Confidence            9999999999999999998654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=1.4e-12  Score=126.69  Aligned_cols=90  Identities=28%  Similarity=0.351  Sum_probs=82.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHc
Q 041922            6 LSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAAL   85 (523)
Q Consensus         6 L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~   85 (523)
                      |+.|+..|.++.|+.++.+  --+....+.+|-|+||-|+-.||.+||++|++.|.     ++|..|.+|+||||+|+..
T Consensus       554 LLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ga-----nVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGA-----NVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCC-----cccCccCCCCchhhhhhhc
Confidence            6889999999999999987  45667788999999999999999999999999874     5999999999999999999


Q ss_pred             CCHHHHHHHHhcCcccc
Q 041922           86 GNEAMCHCMASKDRELI  102 (523)
Q Consensus        86 g~~~iv~~Ll~~~~~~~  102 (523)
                      ++..+++.|++.|+.+.
T Consensus       627 Nnv~~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAVF  643 (752)
T ss_pred             CchHHHHHHHhccceEE
Confidence            99999999999998763

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.28  E-value=2.5e-12  Score=91.02  Aligned_cols=55  Identities=27%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             HHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922           22 YENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus        22 l~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      |+.. ..+.+..|..|+||||+||..|+.+++++|++.+     .+++.+|.+|+||||+|
T Consensus         2 L~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-----~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHG-PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-----ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-------TT---TTS--HHHH-
T ss_pred             CccC-cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-----CCCCCCcCCCCCHHHhC
Confidence            4443 3678899999999999999999999999999764     46999999999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.28  E-value=2.6e-11  Score=109.67  Aligned_cols=92  Identities=20%  Similarity=0.217  Sum_probs=82.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccc-cccCCChHHhH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI-QNDRGDTALHL   81 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-~d~~G~TpLh~   81 (523)
                      -++|++++-+|+.+....||..  --.+|.+|++|.|||..|+..|+.++|+.|++.|++     +|. ++..+.||||.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaD-----vN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGAD-----VNDKQHGTLYTPLMF   85 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCC-----cCcccccccccHHHH
Confidence            4789999999999999999987  345788999999999999999999999999999753     444 56789999999


Q ss_pred             HHHcCCHHHHHHHHhcCccc
Q 041922           82 AAALGNEAMCHCMASKDREL  101 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~  101 (523)
                      |+.+|+.++.++|++.|+..
T Consensus        86 AALSGn~dvcrllldaGa~~  105 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGARM  105 (396)
T ss_pred             HHHcCCchHHHHHHhccCcc
Confidence            99999999999999999755

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.27  E-value=2.9e-11  Score=109.32  Aligned_cols=125  Identities=17%  Similarity=0.188  Sum_probs=111.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEec
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWS  115 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~  115 (523)
                      .-..||.-+...|..+-...|++..     ..+|.+|..|.|||..|+..|+.+++++|++.|+|+|..           
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~v-----r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~-----------   74 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTV-----RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK-----------   74 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHh-----hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc-----------
Confidence            3468999999999999999999863     348999999999999999999999999999999988542           


Q ss_pred             cCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchh
Q 041922          116 SGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDE  195 (523)
Q Consensus       116 ~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (523)
                                                                                                      
T Consensus        75 --------------------------------------------------------------------------------   74 (396)
T KOG1710|consen   75 --------------------------------------------------------------------------------   74 (396)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcc
Q 041922          196 TATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRK  274 (523)
Q Consensus       196 ~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  274 (523)
                                       ++..++||||.|+..|+.++.+.|++. |+.....|.-|+|+-.+|+.-|+.++|..+-.+-
T Consensus        75 -----------------qhg~~YTpLmFAALSGn~dvcrlllda-Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen   75 -----------------QHGTLYTPLMFAALSGNQDVCRLLLDA-GARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             -----------------cccccccHHHHHHHcCCchHHHHHHhc-cCccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence                             223489999999999999999999997 9999999999999999999999999999876553

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.27  E-value=1.8e-11  Score=131.54  Aligned_cols=88  Identities=23%  Similarity=0.240  Sum_probs=81.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      ..|+.|+..|+.+.++.|+..  +.+.+.+|.+|+||||+||..|+.+++++|++.|.     +++.+|.+|.||||+|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~--Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga-----dvn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG--GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA-----DPTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHH
Confidence            358899999999999999988  67788899999999999999999999999999864     58999999999999999


Q ss_pred             HcCCHHHHHHHHhcC
Q 041922           84 ALGNEAMCHCMASKD   98 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~   98 (523)
                      ..|+.+++++|++++
T Consensus       157 ~~g~~~iv~~Ll~~~  171 (664)
T PTZ00322        157 ENGFREVVQLLSRHS  171 (664)
T ss_pred             HCCcHHHHHHHHhCC
Confidence            999999999999984

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.8e-11  Score=119.05  Aligned_cols=119  Identities=19%  Similarity=0.189  Sum_probs=99.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCc
Q 041922           40 ALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNL  119 (523)
Q Consensus        40 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~  119 (523)
                      .|.-|+..|.+|+|+.++...     .+....|..|-||||-|+..||.+||++||+.|+++                  
T Consensus       553 LLLDaaLeGEldlVq~~i~ev-----~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV------------------  609 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEV-----TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV------------------  609 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhh-----cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc------------------
Confidence            345689999999999999865     458889999999999999999999999999999887                  


Q ss_pred             ccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhH
Q 041922          120 EDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATA  199 (523)
Q Consensus       120 ~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  199 (523)
                                                                                                      
T Consensus       610 --------------------------------------------------------------------------------  609 (752)
T KOG0515|consen  610 --------------------------------------------------------------------------------  609 (752)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCccccc-ccCCCcHHHHHHH--cCchhHHHHHHhc
Q 041922          200 AVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDL-DSEKKNLVLLAVE--NRQTGIYKLLLDR  273 (523)
Q Consensus       200 ~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~G~t~Lh~A~~--~~~~~iv~~Ll~~  273 (523)
                                 |..|.+||||||+|+..+++.+++.|++. |+.+... -.++.|+...+-.  .|...|.+||..-
T Consensus       610 -----------Na~DSdGWTPLHCAASCNnv~~ckqLVe~-GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  610 -----------NAADSDGWTPLHCAASCNNVPMCKQLVES-GAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             -----------cCccCCCCchhhhhhhcCchHHHHHHHhc-cceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence                       44566789999999999999999999997 6666554 4889998876543  5778899999754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.99  E-value=1.4e-09  Score=106.88  Aligned_cols=94  Identities=21%  Similarity=0.283  Sum_probs=84.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      ++.+++|+..+|+-.+++.....  -.+-.++.+..|.||+|+..|+-|+|++++++++.   ++++..|..|+|+||.|
T Consensus       867 seeil~av~~~D~~klqE~h~~g--g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~---elld~~de~get~lhka  941 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNG--GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS---ELLDMADETGETALHKA  941 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcC--CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH---HHHHHHhhhhhHHHHHH
Confidence            46789999999999999988884  33445788999999999999999999999998764   67999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCccc
Q 041922           83 AALGNEAMCHCMASKDREL  101 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~  101 (523)
                      +..++-.+.++|++.|+.+
T Consensus       942 a~~~~r~vc~~lvdagasl  960 (1004)
T KOG0782|consen  942 ACQRNRAVCQLLVDAGASL  960 (1004)
T ss_pred             HHhcchHHHHHHHhcchhh
Confidence            9999999999999999866

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.76  E-value=5e-09  Score=107.53  Aligned_cols=85  Identities=15%  Similarity=0.135  Sum_probs=80.2

Q ss_pred             ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccc-cCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccC
Q 041922          211 DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLD-SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDI  289 (523)
Q Consensus       211 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~  289 (523)
                      +.+|..|+|+||+|+..|..+++++||++ |.+++.+| ..|.||||-|+.+|+.+++-+||++|.       .+..+|+
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~-------SL~i~Dk  117 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGR-------SLRIKDK  117 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCC-------ceEEecc
Confidence            67888999999999999999999999998 99999999 679999999999999999999999998       9999999


Q ss_pred             CCCcHhHHHHHhCC
Q 041922          290 KGNSALHLAAKFGE  303 (523)
Q Consensus       290 ~G~TpLH~Aa~~~~  303 (523)
                      +|..||...++-..
T Consensus       118 eglsplq~~~r~~~  131 (1267)
T KOG0783|consen  118 EGLSPLQFLSRVLS  131 (1267)
T ss_pred             cCCCHHHHHhhccc
Confidence            99999999988544

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.71  E-value=1.4e-08  Score=98.21  Aligned_cols=89  Identities=18%  Similarity=0.130  Sum_probs=82.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      -+++.||..||+..++++.-+  +.+.+..|.+.+|+||+||..|+.+++++|++...    .+.+.+|..|+|||.-|.
T Consensus       508 i~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k----v~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACK----VDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHHc----CCCChhhccCCCcchHhH
Confidence            467899999999999999998  78889999999999999999999999999999753    568999999999999999


Q ss_pred             HcCCHHHHHHHHhcC
Q 041922           84 ALGNEAMCHCMASKD   98 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~   98 (523)
                      ..+|.+++++|-+.-
T Consensus       582 ~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hcCcHHHHHHHHHHh
Confidence            999999999998764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.71  E-value=1.3e-08  Score=61.29  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=23.1

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHhcCcccc
Q 041922           74 RGDTALHLAAALGNEAMCHCMASKDRELI  102 (523)
Q Consensus        74 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~  102 (523)
                      +|+||||+||+.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47888888888888888888888887764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.67  E-value=2.9e-06  Score=88.84  Aligned_cols=85  Identities=19%  Similarity=0.110  Sum_probs=71.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCC--ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHh
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPM--SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALH   80 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~--~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh   80 (523)
                      ++....|+..||...|++.++....  .+.|.+|.-|+++||.|..+.+.|+++.|++..       +..     ..+|-
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~-------~~~-----gdALL   93 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTS-------SEE-----GDALL   93 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCc-------ccc-----chHHH
Confidence            4567789999999999999986544  788999999999999999999999999999852       222     45888


Q ss_pred             HHHHcCCHHHHHHHHhcCc
Q 041922           81 LAAALGNEAMCHCMASKDR   99 (523)
Q Consensus        81 ~A~~~g~~~iv~~Ll~~~~   99 (523)
                      +|++.|..+.|+.++.+..
T Consensus        94 ~aI~~~~v~~VE~ll~~~~  112 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFV  112 (822)
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            8999999999999998753

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.63  E-value=2e-08  Score=103.20  Aligned_cols=95  Identities=25%  Similarity=0.222  Sum_probs=78.5

Q ss_pred             HHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhccccccccccccc-CCChHHhHHHHcC
Q 041922            8 KFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQND-RGDTALHLAAALG   86 (523)
Q Consensus         8 ~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~-~G~TpLh~A~~~g   86 (523)
                      .+..+|....++.++.+..+...|..|..|+|+||+|+..|..+++++|+++|.     +++.+|. .|.||||-|+..|
T Consensus        23 ~~~tKs~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGi-----dv~vqD~ESG~taLHRaiyyG   97 (1267)
T KOG0783|consen   23 DSKTKSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGI-----DVFVQDEESGYTALHRAIYYG   97 (1267)
T ss_pred             hhhhcCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCc-----eeeeccccccchHhhHhhhhc
Confidence            344455665688888876566678899999999999999999999999999874     5888885 5999999999999


Q ss_pred             CHHHHHHHHhcCcccccccCC
Q 041922           87 NEAMCHCMASKDRELISAADE  107 (523)
Q Consensus        87 ~~~iv~~Ll~~~~~~~~~~~~  107 (523)
                      +.+++-+|+++|..+-..+.+
T Consensus        98 ~idca~lLL~~g~SL~i~Dke  118 (1267)
T KOG0783|consen   98 NIDCASLLLSKGRSLRIKDKE  118 (1267)
T ss_pred             hHHHHHHHHhcCCceEEeccc
Confidence            999999999999776443333

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.61  E-value=5e-08  Score=60.60  Aligned_cols=31  Identities=23%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHhcCcccccc
Q 041922           74 RGDTALHLAAALGNEAMCHCMASKDRELISA  104 (523)
Q Consensus        74 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~  104 (523)
                      +|+||||+|+..|+.+++++|+++|++++..
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            4777777777777777777777777766544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.60  E-value=4.4e-08  Score=94.80  Aligned_cols=64  Identities=20%  Similarity=0.172  Sum_probs=56.3

Q ss_pred             cccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          212 QQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       212 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      .+|.+.+|+||.||..|+++++++|++.++.+++.+|..|+|||.-|...+|.+++++|-+...
T Consensus       534 ~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  534 TKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             ccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            3455678899999999999999999999999999999999999999999999999999976543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.60  E-value=5.2e-07  Score=87.92  Aligned_cols=88  Identities=14%  Similarity=0.047  Sum_probs=79.0

Q ss_pred             ccccCCCChH------HHHHHHcChHHHHHHHHhhCCCcccccc-cCCCcHHHHHHHcCchhHHHHHHhccccCCccccc
Q 041922          211 DQQSGRKATP------ILIAAKMGVTEMVEKILDTIPVAIHDLD-SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNI  283 (523)
Q Consensus       211 ~~~~~~g~tp------Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~  283 (523)
                      .-+|.+|.|.      ||-.++.|+.+..-.||.. |+++|..+ .+|.||||+|++.|+..-+++|+-.|+       +
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA-------D  192 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA-------D  192 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccC-------C
Confidence            4455566554      9999999999998888887 99999988 789999999999999999999999999       9


Q ss_pred             cccccCCCCcHhHHHHHhCCCCC
Q 041922          284 FEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       284 in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      ++.+|.+|.||+.||-..||.++
T Consensus       193 ~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  193 PGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             CCCCCCCCCcHHHHHHhcCchHH
Confidence            99999999999999999999664

>PF13606 Ank_3: Ankyrin repeat

Probab=98.58  E-value=5e-08  Score=58.76  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=14.0

Q ss_pred             CCcHHHHHHHcCchhHHHHHHhccc
Q 041922          251 KKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       251 G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      |+||||+|+++|+.+++++|+++|+
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            5555555555555555555555555

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.58  E-value=5.8e-08  Score=60.30  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=14.2

Q ss_pred             CCcHHHHHHHcCchhHHHHHHhccc
Q 041922          251 KKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       251 G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      |+||||+|+++|+.+++++|+++|+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga   26 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGA   26 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTS
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcC
Confidence            5555555555555555555555555

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.58  E-value=9.9e-08  Score=94.08  Aligned_cols=89  Identities=21%  Similarity=0.190  Sum_probs=79.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHH
Q 041922            5 CLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAA   84 (523)
Q Consensus         5 ~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~   84 (523)
                      ++|.++...+.+.+...+.......++.+|..|+||||+|+..|+.+.++.|+..+     +++..+|++|++|||.|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-----Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG-----ADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC-----CCccccccccccHHHHHHH
Confidence            48889999999999887776556778899999999999999999999999999976     4589999999999999999


Q ss_pred             cCCHHHHHHHHhcC
Q 041922           85 LGNEAMCHCMASKD   98 (523)
Q Consensus        85 ~g~~~iv~~Ll~~~   98 (523)
                      .|+.+++..++.+-
T Consensus        98 ~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   98 TGNEQIITEVLRHL  111 (560)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999988887653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.48  E-value=4.4e-07  Score=88.40  Aligned_cols=87  Identities=20%  Similarity=0.192  Sum_probs=77.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccC-CCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      +.||..++.|+.+...++|..  |++.|..+ ..|+||||+|++.|+.--++.|+-+|+     +++..|.+|.||+.+|
T Consensus       135 rQLhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA-----D~~a~d~~GmtP~~~A  207 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA-----DPGAQDSSGMTPVDYA  207 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhhccC-----CCCCCCCCCCcHHHHH
Confidence            578999999999999999998  55555544 469999999999999999999998874     5999999999999999


Q ss_pred             HHcCCHHHHHHHHhc
Q 041922           83 AALGNEAMCHCMASK   97 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~   97 (523)
                      -..||.++.+.|++.
T Consensus       208 R~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  208 RQGGHHELAERLVEI  222 (669)
T ss_pred             HhcCchHHHHHHHHH
Confidence            999999999998875

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.42  E-value=6.5e-07  Score=88.89  Aligned_cols=93  Identities=18%  Similarity=0.155  Sum_probs=80.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcc--ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHh
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSR--EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALH   80 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~--~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh   80 (523)
                      |+.|+.|+...|+..+..||.......  ...-+.+|.|+||+||+.|++.+.+.|+=++     .++..+|..|+|+|.
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-----~dv~~rda~g~t~l~  699 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-----VDVMARDAHGRTALF  699 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-----ccceecccCCchhhh
Confidence            678999999999999999998743333  3344667899999999999999999999775     458899999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCcc
Q 041922           81 LAAALGNEAMCHCMASKDRE  100 (523)
Q Consensus        81 ~A~~~g~~~iv~~Ll~~~~~  100 (523)
                      ||-+.|..+++..|+++|..
T Consensus       700 yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hHhhcccHHHHHHHHHcCCC
Confidence            99999999999999999853

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.36  E-value=2.8e-07  Score=90.95  Aligned_cols=81  Identities=21%  Similarity=0.185  Sum_probs=63.4

Q ss_pred             hHHHHHHHcChHHHHHHHHh-hCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHH
Q 041922          219 TPILIAAKMGVTEMVEKILD-TIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHL  297 (523)
Q Consensus       219 tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~  297 (523)
                      -|+|.++.....+-+..++. .-...++.+|..|+||||+|+.-|+.+.++.|+..|+       ++..+|++|++|||.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~A-------dv~~kN~~gWs~L~E   94 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGA-------DVSIKNNEGWSPLHE   94 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCC-------CccccccccccHHHH
Confidence            45888888777766655332 2345778888888888888888888888888888888       888888888888888


Q ss_pred             HHHhCCCCC
Q 041922          298 AAKFGEYGP  306 (523)
Q Consensus       298 Aa~~~~~~~  306 (523)
                      |+..|+.++
T Consensus        95 Av~~g~~q~  103 (560)
T KOG0522|consen   95 AVSTGNEQI  103 (560)
T ss_pred             HHHcCCHHH
Confidence            888888654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.29  E-value=3e-06  Score=83.93  Aligned_cols=60  Identities=17%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             cCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcc
Q 041922          214 SGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRK  274 (523)
Q Consensus       214 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  274 (523)
                      |..|.|+||-|+..++-.+.++|++. |+.+...|.+|.||-.-|-+.|.++...||-++.
T Consensus       931 de~get~lhkaa~~~~r~vc~~lvda-gasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  931 DETGETALHKAACQRNRAVCQLLVDA-GASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             hhhhhHHHHHHHHhcchHHHHHHHhc-chhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            34688888888888888888888887 8888888888999988888888888888886654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.18  E-value=5.8e-06  Score=86.60  Aligned_cols=63  Identities=17%  Similarity=0.266  Sum_probs=49.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCc
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDR   99 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~   99 (523)
                      .+.--...|++.|+.-.|+..++.... ..-.+|++|.-|+++|+.|+.+.+.|+.++|++.+.
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~-~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~   86 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAV-SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS   86 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccc-cccchhccChHhhhceecccccccHHHHHHHhcCcc
Confidence            344556778899999999888887553 345688888899999999999999999998888753

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.10  E-value=1.8e-06  Score=92.86  Aligned_cols=85  Identities=22%  Similarity=0.203  Sum_probs=79.0

Q ss_pred             CCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcH
Q 041922          215 GRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSA  294 (523)
Q Consensus       215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~Tp  294 (523)
                      ..|.|+||.|+..|..-++++|+++ ++++|.+|..|+||+|.+...|+...+..++++|+       +.+..|.+|.+|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a-------~~~a~~~~~~~~  725 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGA-------DPNAFDPDGKLP  725 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccccc-------cccccCccCcch
Confidence            4689999999999999999999997 89999999999999999999999999999999999       999999999999


Q ss_pred             hHHHHHhCCCCCc
Q 041922          295 LHLAAKFGEYGPW  307 (523)
Q Consensus       295 LH~Aa~~~~~~~~  307 (523)
                      |++|....+.+..
T Consensus       726 l~~a~~~~~~d~~  738 (785)
T KOG0521|consen  726 LDIAMEAANADIV  738 (785)
T ss_pred             hhHHhhhccccHH
Confidence            9999887664443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.10  E-value=7.4e-06  Score=81.60  Aligned_cols=62  Identities=16%  Similarity=0.202  Sum_probs=45.7

Q ss_pred             cCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcccc
Q 041922          214 SGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKML  276 (523)
Q Consensus       214 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  276 (523)
                      +.+|+|+||+||..|++.+.++|+- +|.|+..+|.+|+|+|.+|-+.|.-++++.|+++|..
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcccHHHHHHHHHcCCC
Confidence            3466777777777777777777775 3777777777777777777777777777777777753

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.76  E-value=5.4e-05  Score=65.25  Aligned_cols=71  Identities=27%  Similarity=0.226  Sum_probs=63.6

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCccc
Q 041922           27 MSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDREL  101 (523)
Q Consensus        27 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~  101 (523)
                      +.++|.+|..|+|+|++|+..|+.+.+.+|+.+|.    +.+...|..|.+++.+|-+.|+.++++.|-+...+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~----a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGV----AFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCc----ccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            35678899999999999999999999999999873    468999999999999999999999999999885443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.71  E-value=7.3e-05  Score=71.03  Aligned_cols=59  Identities=20%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             ChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccC
Q 041922          218 ATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLG  277 (523)
Q Consensus       218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~  277 (523)
                      .--|..||+.|.++.|+.|++. |.++|.+|.....||.+|+..||.++|++|+++|+..
T Consensus        37 f~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            4568899999999999999995 9999999999999999999999999999999999843

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.60  E-value=8.3e-05  Score=79.90  Aligned_cols=31  Identities=23%  Similarity=0.021  Sum_probs=26.2

Q ss_pred             cccccccCCChHHhHHHHcCCHHHHHHHHhc
Q 041922           67 VLKIQNDRGDTALHLAAALGNEAMCHCMASK   97 (523)
Q Consensus        67 ~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~   97 (523)
                      .....+..|.|-+|+++..++...++.+++-
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~  596 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEW  596 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcc
Confidence            4566778899999999999999988888875

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.60  E-value=0.00012  Score=63.10  Aligned_cols=65  Identities=17%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          211 DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       211 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      |.+|..|+||++.|+..|+.+.+.+|+.+.-+.+...|..|.+++.+|-+.|..++++.|.+...
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            67888999999999999999999999998449999999999999999999999999999998854

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.57  E-value=0.00015  Score=68.96  Aligned_cols=56  Identities=23%  Similarity=0.208  Sum_probs=36.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCc
Q 041922           39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDR   99 (523)
Q Consensus        39 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~   99 (523)
                      --|..||+.|..|.|++|++.|-     .+|++|....+||.+|+..||.++|++|+++|+
T Consensus        38 ~elceacR~GD~d~v~~LVetgv-----nVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGV-----NVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCC-----CcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            34566666677777776666542     366666666667777766677767777766665

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.56  E-value=8.1e-05  Score=80.42  Aligned_cols=58  Identities=22%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             cccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHH
Q 041922          212 QQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLL  270 (523)
Q Consensus       212 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~L  270 (523)
                      ..|..|.||||.+...|+...+..|+++ +++.+..|.+|.++|++|....+.+++-++
T Consensus       684 ~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  684 ALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             hhhccCCCcchhhhhhcccchhhhhccc-cccccccCccCcchhhHHhhhccccHHHHH
Confidence            3455688899999999999999999996 999999999999999999888776666554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.38  E-value=0.00023  Score=76.67  Aligned_cols=130  Identities=18%  Similarity=0.128  Sum_probs=90.1

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHH-hcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCC
Q 041922           29 REAKLTRSGDTALHIAAAAGQTNIVSELVEI-MGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADE  107 (523)
Q Consensus        29 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  107 (523)
                      ........|.|.||.++..+..-.++.+++. +.     .....|.+|.-.+|+ |..++.+.+-+|+...         
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~-----~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~---------  630 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGS-----GDLELDRDGQGVIHF-CAALGYEWAFLPISAD---------  630 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhccccc-----CchhhcccCCChhhH-hhhcCCceeEEEEeec---------
Confidence            3445567899999999999999999999885 32     244566777777777 4455555444433321         


Q ss_pred             CCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhc
Q 041922          108 GLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHN  187 (523)
Q Consensus       108 ~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (523)
                                              +..+                                                    
T Consensus       631 ------------------------~~ai----------------------------------------------------  634 (975)
T KOG0520|consen  631 ------------------------GVAI----------------------------------------------------  634 (975)
T ss_pred             ------------------------cccc----------------------------------------------------
Confidence                                    1122                                                    


Q ss_pred             cCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCc------ccccccCCCcHHHHHHHc
Q 041922          188 KDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVA------IHDLDSEKKNLVLLAVEN  261 (523)
Q Consensus       188 ~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~------~~~~d~~G~t~Lh~A~~~  261 (523)
                                             +.+|..|+||||+|+.+|+..++..|++. +++      +...+..|.|+-..|-.+
T Consensus       635 -----------------------~i~D~~G~tpL~wAa~~G~e~l~a~l~~l-ga~~~~~tdps~~~p~g~ta~~la~s~  690 (975)
T KOG0520|consen  635 -----------------------DIRDRNGWTPLHWAAFRGREKLVASLIEL-GADPGAVTDPSPETPGGKTAADLARAN  690 (975)
T ss_pred             -----------------------ccccCCCCcccchHhhcCHHHHHHHHHHh-ccccccccCCCCCCCCCCchhhhhhcc
Confidence                                   33556688888888888888888888865 332      233345688999999999


Q ss_pred             CchhHHHHHHhc
Q 041922          262 RQTGIYKLLLDR  273 (523)
Q Consensus       262 ~~~~iv~~Ll~~  273 (523)
                      |+..+..+|-+.
T Consensus       691 g~~gia~~lse~  702 (975)
T KOG0520|consen  691 GHKGIAGYLSEK  702 (975)
T ss_pred             cccchHHHHhhh
Confidence            998888888665

>smart00248 ANK ankyrin repeats

Probab=96.77  E-value=0.0018  Score=37.60  Aligned_cols=26  Identities=38%  Similarity=0.523  Sum_probs=15.7

Q ss_pred             CChHHhHHHHcCCHHHHHHHHhcCcc
Q 041922           75 GDTALHLAAALGNEAMCHCMASKDRE  100 (523)
Q Consensus        75 G~TpLh~A~~~g~~~iv~~Ll~~~~~  100 (523)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55666666666666666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.25  E-value=0.0058  Score=35.34  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=12.0

Q ss_pred             CCcHHHHHHHcCchhHHHHHHhccc
Q 041922          251 KKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       251 G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4444555554445555554444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.33  E-value=0.017  Score=57.39  Aligned_cols=62  Identities=15%  Similarity=0.128  Sum_probs=49.6

Q ss_pred             HHHHHHHHhhCCCccc------ccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHH
Q 041922          230 TEMVEKILDTIPVAIH------DLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAA  299 (523)
Q Consensus       230 ~~~v~~Ll~~~~~~~~------~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa  299 (523)
                      .+.+++|.++ +.+.|      ..|..--|+||+|+.+|..++|.++|+.|.       |...+|..|.||..+++
T Consensus       404 p~~ie~lken-~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~-------Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKEN-LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC-------DPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhc-CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC-------CchhcccCCCCcccccc
Confidence            5567777765 44432      334456799999999999999999999998       88899999999998877

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.33  E-value=0.019  Score=57.08  Aligned_cols=44  Identities=18%  Similarity=0.110  Sum_probs=40.9

Q ss_pred             CCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHH
Q 041922          215 GRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAV  259 (523)
Q Consensus       215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~  259 (523)
                      .--.|+||+|+..|..++|.+||+. ++|+...|..|+||..++.
T Consensus       428 ~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  428 YLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccc
Confidence            3468999999999999999999998 7999999999999999887

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.11  E-value=2.2  Score=37.38  Aligned_cols=46  Identities=17%  Similarity=0.134  Sum_probs=39.8

Q ss_pred             HHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHh
Q 041922          220 PILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLD  272 (523)
Q Consensus       220 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  272 (523)
                      -|..|+..|-.+.+...|+. |.+++.      ++|..|+++++.+++.+++.
T Consensus       146 hl~~a~~kgll~F~letlky-gg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKY-GGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHc-CCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            47899999999999999997 656553      89999999999999999875

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=85.16  E-value=5  Score=36.42  Aligned_cols=40  Identities=20%  Similarity=0.177  Sum_probs=30.3

Q ss_pred             HHHHHHHhc--------ccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          202 QELKFMKKK--------DQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       202 ~~v~~Ll~~--------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                      .+++.++++        -.+-+.|.|-|--|.++++.+++..||+. |+
T Consensus       231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~-GA  278 (284)
T PF06128_consen  231 KVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKY-GA  278 (284)
T ss_pred             HHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHc-Cc
Confidence            355555555        12335799999999999999999999996 65

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.85  E-value=1.6  Score=32.56  Aligned_cols=49  Identities=14%  Similarity=0.150  Sum_probs=40.9

Q ss_pred             ChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcc
Q 041922          218 ATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRK  274 (523)
Q Consensus       218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  274 (523)
                      ..-+..|+..|+.|+++..++..  .++      ...+..|+...+-+++++|+++-
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~--~~~------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN--KPD------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh--ccH------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            45688999999999999999762  111      56799999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	523
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2rfa_A	232	Transient receptor potential cation channel subfa	6e-08
2rfa_A	232	Transient receptor potential cation channel subfa	5e-05
2rfa_A	232	Transient receptor potential cation channel subfa	9e-05
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	8e-08
2etb_A	256	Transient receptor potential cation channel subfam	5e-06
2etb_A	256	Transient receptor potential cation channel subfam	6e-05
2etb_A	256	Transient receptor potential cation channel subfam	9e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	5e-07
2pnn_A	273	Transient receptor potential cation channel subfa	2e-05
2pnn_A	273	Transient receptor potential cation channel subfa	5e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 58.3 bits (142), Expect = 7e-10
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 29  REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           ++   T  GD+ LH+A    +  +  E++  +  + + +   QN+   T LHLA      
Sbjct: 1   KQQL-TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQP 58

Query: 89  AMCHCMASKDRELISA-AD 106
            +          L+ A  D
Sbjct: 59  EIA-------EALLGAGCD 70

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI--QNDRGDTALHLAAALGN 87
              G+T LH+A   G    V  L +           +   N  G T LHLA+  G 
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHSILKATNYNGHTCLHLASIHGY 129

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 18/96 (18%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEA 89
            A+   +G TALH+A      ++VS L+    +  ++V      +G +   L     +  
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLL----KCGADV-NRVTYQGYSPYQLTWGRPSTR 198

Query: 90  MCHCMASKDRELISA-ADEGLANCSWSSGNLEDKEH 124
           +        ++L     +             ED+E 
Sbjct: 199 IQ-------QQLGQLTLENLQML-----PESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
            T LH+A    Q  I   L+        +  ++++ RG+T LHLA   G  A 
Sbjct: 45 QQTPLHLAVITNQPEIAEALLG----AGCDP-ELRDFRGNTPLHLACEQGCLAS 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 5e-09
 Identities = 41/349 (11%), Positives = 89/349 (25%), Gaps = 73/349 (20%)

Query: 229 VTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESD-----LNI 283
             E   +  D + V          N     V++    I        ++   D     L +
Sbjct: 11  TGEHQYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 284 FEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKE----SMPRYFFLGYN 339
           F  +  K         KF E          L++ ++        E    SM    ++   
Sbjct: 68  FWTLLSKQEEM---VQKFVE--------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 340 NKGKTPKEIFTKTH---KELVKDGQEWLSR-TSESCLVV--------AALIASVALTTS- 386
           ++     ++F K +    +     ++ L        +++          +   V L+   
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 387 -ATVPGGL------NEQSGKPILENEPAFKIFAISSFVALCFSMTALSFFFSILTSTYRE 439
              +   +      N  S + +LE           ++ +     + +      + +  R 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 440 KDLAMALPRKLL---------------LG----LTSLFTSIAAIMISFCSGHFSVLRDEM 480
              +      LL               L     LT+ F  +   + +  + H S+  D  
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL--DHH 294

Query: 481 RSAVYPLYA----ATCFPMIFFVLAHV-----PLYLDLIWAIFKKVPQR 520
              + P                 L        P  L +I    +     
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 60/522 (11%), Positives = 145/522 (27%), Gaps = 169/522 (32%)

Query: 12  RGQWDNFVQAYENNPMSRE----------AKLTRSGDTALHIAAAAGQTNIVSELV---E 58
           R +  N  Q +    +SR            +L  + +  +     +G+T +  ++    +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 59  IMGENASNV--LKIQNDRGDTAL--HLAAALGNEAMCHCMASKDRELISAADEGLANCSW 114
           +  +    +  L ++N      +   L      + + + +          +         
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEML------QKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 115 SSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQS 174
               L      +      + L    +     +++   K  + F++  +  +L       +
Sbjct: 230 IQAELRRLLKSKPYENCLLVL---LN----VQNA---KAWNAFNL--SCKIL-----LTT 272

Query: 175 RNICLESAVA---------VHNKDGNARDETATAAVQEL--KFMKKKDQQSGRKATPI-- 221
           R   +   ++          H+      DE      + L  K++  + Q   R+      
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEV-----KSLLLKYLDCRPQDLPREVLTTNP 327

Query: 222 ----LIAAKM----------------GVTEMVEKILDT---------------------I 240
               +IA  +                 +T ++E  L+                      I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 241 PVAI-----HDLDSE----------KKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFE 285
           P  +      D+             K +LV    +     I  + L+ K+  E++     
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY---- 443

Query: 286 HVDIKGNSALHLAAKFGE-YGPWRIPGAALQMQWEIKWYKFVKESMPRYFF--LGYNNKG 342
                   ALH      + Y   +                 +   + +YF+  +G++ K 
Sbjct: 444 --------ALH--RSIVDHYNIPK----------TFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 343 KTPKE---IFTKTHKELVKDGQEWLSRTSESCLVVAALIASVALTTSATVPGGLN----- 394
               E   +F     +       +L +          +      +T+    G +      
Sbjct: 484 IEHPERMTLFRMVFLDF-----RFLEQK---------IRHD---STAWNASGSILNTLQQ 526

Query: 395 -EQSGKPILENEPAF--KIFAISSFVALCFSMTALSFFFSIL 433
            +     I +N+P +   + AI  F+         S +  +L
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 37  GDTALHIAAAAGQTNIVSELVEI-----MGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G+T LHI           ++  +      G++  ++  + N++G T   LA   GN  M
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 15/87 (17%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
            ++ L +AA       +S+L++        V   +   G+TALH+AA   N         
Sbjct: 3   WESPLLLAAKENDVQALSKLLK---FEGCEV-HQRGAMGETALHIAALYDNLEAA----- 53

Query: 97  KDRELISAADEGLANCSWSSGNLEDKE 123
               L+ AA        +     E  E
Sbjct: 54  --MVLMEAA----PELVFEPMTSELYE 74

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 34  TRSGDTALHIAAAAGQTNIVSEL------VEIMGENASNVLKIQNDR--GDTALHLAAAL 85
              G TALHIA      N+V  L      V      +    +  N    G+  L  AA +
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

Query: 86  GNEAM 90
           G+E +
Sbjct: 132 GSEEI 136

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI----QNDRGDTALHLAAALGNEA 89
             G+TALHIAA          L+    E A  ++      +   G TALH+A    N  
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLM----EAAPELVFEPMTSELYEGQTALHIAVINQNVN 89

Query: 90 M 90
          +
Sbjct: 90 L 90

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 23  ENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA 82
            +    R   L   G+  L  AA  G   IV  L+    E+ +++ + Q+  G+T LH+ 
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI----EHGADI-RAQDSLGNTVLHIL 161

Query: 83  AALGNE 88
               N+
Sbjct: 162 ILQPNK 167

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 20  QAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTAL 79
           +A        +      G+  L +AA   Q ++V+ L+E   + AS  L+  +  G+T L
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS--LEATDSLGNTVL 176

Query: 80  HLAAALGNEAMCHCMASKDRELISAADEGL 109
           H    + +       + ++  L+    +GL
Sbjct: 177 HALVMIADN------SPENSALVIHMYDGL 200

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
               ++AL I    G   + + L            +I N +G T L LAA  G   +   
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCP----TVQLE-EISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 94  MASKD 98
           +  ++
Sbjct: 240 ILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 20/93 (21%), Positives = 25/93 (26%), Gaps = 15/93 (16%)

Query: 6   LSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVE------- 58
           L      G     V A   +   +       G +ALHIA        V  LVE       
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQ-------GHSALHIAIEKRSLQCVKLLVENGADVHL 118

Query: 59  -IMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
              G             G+  L LAA      +
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 36  SGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKI------QNDRGDTALHLAAALG 86
           +G T L  A      G    +  L++I  ++ +    +      +  +G +ALH+A    
Sbjct: 42  TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR 101

Query: 87  NEAM 90
           +   
Sbjct: 102 SLQC 105

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
          T  GDTALH+A        +  L+         +  +QND G TALHLAA LG  + 
Sbjct: 6  TEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYL-DLQNDLGQTALHLAAILGEAST 60

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 25 NPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAA 84
               + +    G TALH+AA  G+ + V +L        + V  +    G TALHLA  
Sbjct: 34 GHEYLDLQ-NDLGQTALHLAAILGEASTVEKLY----AAGAGV-LVAERGGHTALHLACR 87

Query: 85 LGNEAMC 91
          +      
Sbjct: 88 VRAHTCA 94

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
              G T LH+A       +V  L +      +++ K +   G T LHLA      ++
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRD----AGADLNKPEPTCGRTPLHLAVEAQAASV 207

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEA 89
                  G T LH+A  A   +++  L+    +  ++    +   G T L  A    N  
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLL----KAGADP-TARMYGGRTPLGSALLRPNPI 239

Query: 90  MC 91
           + 
Sbjct: 240 LA 241

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 5/55 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
              G T L  A       +   L      + +           +    + +  + 
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLR----AHGAPE-PEDGGDKLSPCSSSGSDSDS 271

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 4/75 (5%)

Query: 16  DNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRG 75
            +   A +      +     +      + +     N      E         L+ +N  G
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ----LEAENYDG 158

Query: 76  DTALHLAAALGNEAM 90
            T LH+A    +  M
Sbjct: 159 HTPLHVAVIHKDAEM 173

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
          GDT LHIA   G    V  LV +  +    +  I N+   T LHLA      
Sbjct: 9  GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLP 59

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
            R G TA H+A        +  L++       ++ + +N  G TALH+A     +  
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQET 131

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
            A+   SG +ALH A+  G   +V  LV     + ++   ++N   DT L +A +   
Sbjct: 177 NAQ-MYSGSSALHSASGRGLLPLVRTLV----RSGADS-SLKNCHNDTPLMVARSRRV 228

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEA 89
           +A   +SG + L  A      ++V  L+    ++ +NV   Q   G +ALH A+  G   
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLL----QHGANV-NAQMYSGSSALHSASGRGLLP 197

Query: 90  M 90
           +
Sbjct: 198 L 198

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
               T LH+A      ++V  LV       ++     +  G TA HLA    +
Sbjct: 43 NNLRQTPLHLAVITTLPSVVRLLV----TAGASP-MALDRHGQTAAHLACEHRS 91

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 26  PMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAAL 85
             ++       G+  L +AA   Q  IV  L++   + A   +  ++  G+T LH    +
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD--ISARDSVGNTVLHALVEV 194

Query: 86  GNE 88
            + 
Sbjct: 195 ADN 197

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 15/90 (16%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGEN-----------ASNVLKIQNDRGDTALHLA 82
              G+T LH         + +        N              + +I N +G T L LA
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 83  AALGNEAMCHCMASKDRE----LISAADEG 108
           A+ G   +   +  ++        +AA   
Sbjct: 241 ASSGKIGVLAYILQREIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 37  GDTALHIAAAAGQTNIVSELVE---------IMGENASNVLKIQNDRGDTALHLAAALGN 87
           G TALHIA       +V+ LVE                   +     G+  L LAA    
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 88  EAMC 91
            A+ 
Sbjct: 161 LAIV 164

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 12/70 (17%)

Query: 19  VQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTA 78
           + A  +  +  E    R G T L +AA++G+  +++ +++            +       
Sbjct: 215 LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------------REIHEPEC 262

Query: 79  LHLAAALGNE 88
            H AA   + 
Sbjct: 263 RHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 30  EAKLTRSGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKIQND-------RGDTAL 79
           E K   +G T L  A      GQ + ++ L+++      ++ +  N        +G TAL
Sbjct: 47  EFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTAL 105

Query: 80  HLAAALGNEAM 90
           H+A    N  +
Sbjct: 106 HIAIERRNMTL 116

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.0 bits (118), Expect = 5e-07
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           G+  LH A   GQ  +  +LV     N + V  I N  G+  +  A A   E
Sbjct: 105 GNVPLHYACFWGQDQVAEDLV----ANGALV-SICNKYGEMPVDKAKAPLRE 151

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.5 bits (109), Expect = 7e-06
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 13/74 (17%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
            R  DT LH+AA+ G  +IV +L+    +  +++    N+ G+  LH A   G + +   
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLL----QYKADI-NAVNEHGNVPLHYACFWGQDQVA-- 121

Query: 94  MASKDRELISA-AD 106
                 +L++  A 
Sbjct: 122 -----EDLVANGAL 130

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
              +      G    V   +    +N  N L   +D G + LH A   G 
Sbjct: 5  FMDDIFTQCREGNAVAVRLWL----DNTENDLNQGDDHGFSPLHWACREGR 51

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          G + LH A   G++ +V  L+       + +  + N   DT LHLAA+ G+
Sbjct: 39 GFSPLHWACREGRSAVVEMLI----MRGARI-NVMNRGDDTPLHLAASHGH 84

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 30/212 (14%), Positives = 65/212 (30%), Gaps = 48/212 (22%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMA- 95
           G+T LH   +     +V  LV    ++ SN L   ++ G++ L  A    N         
Sbjct: 131 GNTPLHWLTSIANLELVKHLV----KHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEA 185

Query: 96  --SKDRELISAADEG-------LANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSR 146
                   +   D         +   S  +G     +++ +    ++    N      + 
Sbjct: 186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245

Query: 147 DSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKF 206
           +     +       ++     + +   +  +             NA+D            
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANML-------------NAQDS----------- 281

Query: 207 MKKKDQQSGRKATPILIAAKMGVTEMVEKILD 238
                  +G   T + IAA++G   +V+ +LD
Sbjct: 282 -------NGD--TCLNIAARLGNISIVDALLD 304

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA 83
           GDT L+IAA  G  +IV  L++     A     I N  G   +   A
Sbjct: 283 GDTCLNIAARLGNISIVDALLD---YGAD--PFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 40/317 (12%), Positives = 86/317 (27%), Gaps = 71/317 (22%)

Query: 1   MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM 60
           M++    +  +  +      +  N+  +R ++   S     H++      +++ E+ +  
Sbjct: 61  MKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF----DSLLQEVNDAF 116

Query: 61  GENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLE 120
                N+    ++ G+T LH   ++ N  +          L+     G +N         
Sbjct: 117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKH-------LVKH---G-SNR-----LYG 160

Query: 121 DKE-----------HHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLEND 169
           D              +    GT+  L     +         D    T             
Sbjct: 161 DNMGESCLVKAVKSVNNYDSGTFEALLD---YLYPCLILE-DSMNRT------------- 203

Query: 170 QIFQSRNICLESAVAVHNKDGN---ARDETATAAVQELKFMKKKDQQSGRKATPILIAAK 226
                    L   +      G    A+          +K   +  Q    +         
Sbjct: 204 --------ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255

Query: 227 MGVTEMVEKILDTIPVAIHDLDSEKKN----LVLLAVENRQTGIYKLLLDRKMLGESDLN 282
               + + + LD   +  + L+++  N    L  +A       I   LLD      +D  
Sbjct: 256 GERKDSILENLDLKWIIANMLNAQDSNGDTCL-NIAARLGNISIVDALLDYG----ADPF 310

Query: 283 IFEHVDIKGNSALHLAA 299
           I    +  G   +   A
Sbjct: 311 I---ANKSGLRPVDFGA 324

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.6 bits (117), Expect = 6e-07
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEA 89
           + +  R G TALH+AA   +  +V  LV    E  +++ +++++RG TAL LA  +    
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALV----ELGADI-EVEDERGLTALELAREILKTT 157

Query: 90  MC 91
             
Sbjct: 158 PK 159

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.2 bits (108), Expect = 9e-06
 Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 15/70 (21%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           G     I    G +             A++V        +T    AA   +E        
Sbjct: 14  GAMEYLIEWKDGHS----PSWVPSSYIAADV----VSEYETPWWTAARKADEQAL----- 60

Query: 97  KDRELISAAD 106
              +L+   D
Sbjct: 61  --SQLLEDRD 68

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           +T    AA       +S+L+    E+  +V    ++ G TAL   A LG++  
Sbjct: 44 YETPWWTAARKADEQALSQLL----EDR-DV-DAVDENGRTALLFVAGLGSDKC 91

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNV-LKIQNDRGDTALHLAAALGNEAMC 91
           G TAL   A  G    V  L     E  +++  +     G TALH+AA      + 
Sbjct: 76  GRTALLFVAGLGSDKCVRLLA----EAGADLDHRDMRG-GLTALHMAAGYVRPEVV 126

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           G T LHIAA   Q  +   L+    +   +    ++ +G T LHLAA  G+  M 
Sbjct: 212 GYTPLHIAAKQNQVEVARSLL----QYGGSA-NAESVQGVTPLHLAAQEGHAEMV 261

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
            SG T LH+A+  G   IV  L+    +  ++   + N + +T LH+AA  G+  + 
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLL----QRGASP-NVSNVKVETPLHMAARAGHTEVA 63

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 3e-06
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 16/86 (18%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
               +T LH+AA AG T +   L++    N + V   +     T LH AA +G+  M   
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQ----NKAKV-NAKAKDDQTPLHCAARIGHTNMVKL 98

Query: 94  MAS-------KDRE----LISAADEG 108
           +                 L  AA EG
Sbjct: 99  LLENNANPNLATTAGHTPLHIAAREG 124

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           +  G T LH+AA  G   +V+ L+       +N   + N  G T LHL A  G+  + 
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLL----SKQANG-NLGNKSGLTPLHLVAQEGHVPVA 294

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 7e-06
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 13/74 (17%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
            ++G T LH+A      +IV  L+        +        G T LH+AA      +   
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLL----PRGGSP-HSPAWNGYTPLHIAAKQNQVEVA-- 228

Query: 94  MASKDRELISA-AD 106
                R L+     
Sbjct: 229 -----RSLLQYGGS 237

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.1 bits (113), Expect = 8e-06
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           TR G T LH+A+  G   +V  L+    ++ ++V   +   G + LH AA  G+  + 
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLL----QHQADV-NAKTKLGYSPLHQAAQQGHTDIV 360

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.9 bits (110), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
            +   T LH AA  G TN+V  L+    EN +N   +    G T LH+AA  G+    
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLL----ENNANP-NLATTAGHTPLHIAAREGHVETV 129

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           T +G T LHIAA  G    V  L+    E  ++       +G T LH+AA  G 
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALL----EKEASQ-ACMTKKGFTPLHVAAKYGK 158

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           T+ G + LH AA  G T+IV+ L++     AS      +  G T L +A  LG  
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLK---NGAS--PNEVSSDGTTPLAIAKRLGYI 390

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
            +SG T LH+ A  G   +   L+    ++   V       G T LH+A+  GN  +
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI----KHGVMV-DATTRMGYTPLHVASHYGNIKL 326

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           T+ G T LH+AA  G+  +   L+    E  ++        G T LH+A    N
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLL----ERDAHP-NAAGKNGLTPLHVAVHHNN 191

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 38/247 (15%)

Query: 31  AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALG---- 86
           A +      A  +AA  G  ++++ L E+     +    +       A   AA       
Sbjct: 157 AMIQAENYHAFRLAAENGHLHVLNRLCEL---APTEATAMIQAENYYAFRWAAVGRGHHN 213

Query: 87  -NEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSS 145
               +  C        I   + G       +  +    +  ++      LS+ D      
Sbjct: 214 VINFLLDCPVMLAYAEIHEFEYGEKYV---NPFIARHVNRLKEMHDAFKLSNPDGV-FDL 269

Query: 146 RDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELK 205
                   G                        L + +   N +    D     ++  +K
Sbjct: 270 VTKSECLQGFY---------------------MLRNLIR-RNDEVLLDDIRFLLSIPGIK 307

Query: 206 FMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTG 265
            +       G     + +A ++G       +L         L   K N   +     +  
Sbjct: 308 ALAPTATIPGDANELLRLALRLGNQGACALLLSIPS----VLALTKANNYYINETGGRLD 363

Query: 266 IYKLLLD 272
           +  + L+
Sbjct: 364 LRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 32  KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALG 86
            +      A  +AA  G  ++++ L E+     + ++ +       A  LAA  G
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCEL---APTEIMAMIQAENYHAFRLAAENG 174

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 30/283 (10%), Positives = 71/283 (25%), Gaps = 59/283 (20%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMA 95
             +    +AA  G ++ +  L  ++  +   ++K+       A  LAA  G+  +     
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDE--IVKVIQAENYQAFRLAAENGHLHVL---- 144

Query: 96  SKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDH----------GKSS 145
                L                  E     + +      L++ + H            + 
Sbjct: 145 ---NRLCEL------------APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189

Query: 146 RDSRPDKDGDTFSVPETPPVL---ENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQ 202
             +    +                         N  L+  V +   + +  +        
Sbjct: 190 ATAMIQAENY------YAFRWAAVGRGHH-NVINFLLDCPVMLAYAEIHEFEYGEKYVN- 241

Query: 203 ELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLL--AVE 260
              F+ +   +         ++   GV ++V K                +   +L   + 
Sbjct: 242 --PFIARHVNRLKEMHDAFKLSNPDGVFDLVTK------------SECLQGFYMLRNLIR 287

Query: 261 NRQTGIYKLL-LDRKMLGESDLNIFEHVDIKGNSALHLAAKFG 302
                +   +     + G   L     +    N  L LA + G
Sbjct: 288 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 330

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 48.2 bits (116), Expect = 8e-07
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
              ++H  AA G+ + + E +   G+N  N     ++RG T L  A+A G          
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRK-GDNLVN---KPDERGFTPLIWASAFGEIETV----- 52

Query: 97  KDRELISA-AD 106
             R L+   AD
Sbjct: 53  --RFLLEWGAD 61

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
          G T L  A+A G+   V  L+E      ++   I     ++AL LA+  G  
Sbjct: 36 GFTPLIWASAFGEIETVRFLLE----WGADP-HILAKERESALSLASTGGYT 82

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 16/86 (18%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
            +  ++AL +A+  G T+IV  L+E    +  ++  I +  G T L  A    +      
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLE---RDV-DI-NIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 94  MAS-------KDRE----LISAADEG 108
           + +       +       +  A   G
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALG 146

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           G T L  A        V  L+       +++   + D G T + LA ALG  
Sbjct: 102 GGTPLLYAVRGNHVKCVEALLA----RGADL-TTEADSGYTPMDLAVALGYR 148

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 13/85 (15%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
            + G++ LH A      ++    VE       +V  ++++     L+L+       +   
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVE----MGIDV-NMEDNEHTVPLYLSVRAAMVLLT-- 260

Query: 94  MASKDRELIS-AADEGLANCSWSSG 117
                +EL+       +  C + +G
Sbjct: 261 -----KELLQKTDVFLIQACPYHNG 280

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 11/58 (18%), Positives = 25/58 (43%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
            ++ +T L  A        +  +++ +   +S  L   N +G++ LH A  +  E + 
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
                 +H+AA  GQT+ V  L+    E   +   IQN  G TALHLA   G  
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLI----ETGVSP-TIQNRFGCTALHLACKFGCV 66

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G TALH     G   +  E+++I+ +  ++    ++   +T L  A    N   
Sbjct: 138 GQTALHWCVGLGPEYL--EMIKILVQLGASP-TAKDKADETPLMRAMEFRNREA 188

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 10/67 (14%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVE---------IMGENASNVLKIQNDRGDTALHLAAA 84
                  L+++  A    +  EL++             N + VL  +       +  AA 
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV-WLDFVPAAAD 299

Query: 85  LGNEAMC 91
              + + 
Sbjct: 300 PSKQEVL 306

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 16/75 (21%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDR-GDTALHLAAALGNEAMCH 92
            R G TALH+A   G  +    L  + GE         +   G   +HLA       +  
Sbjct: 50  NRFGCTALHLACKFGCVDTAKYLASV-GEVH-------SLWHGQKPIHLAVMANKTDLV- 100

Query: 93  CMASKDRELISAADE 107
                   L+  A E
Sbjct: 101 ------VALVEGAKE 109

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 16/80 (20%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
              G   +H+A  A +T++V  LVE              +RG     L        +   
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVE-----------GAKERGQMPESLLNECDEREVNEI 129

Query: 94  MA-SKDRE----LISAADEG 108
            +  K  +    L      G
Sbjct: 130 GSHVKHCKGQTALHWCVGLG 149

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 11/52 (21%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           G     +     +  +      +           ++ +G TALH    LG E
Sbjct: 111 GQMPESLLNECDEREVNEIGSHV-----------KHCKGQTALHWCVGLGPE 151

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 7/57 (12%), Positives = 13/57 (22%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
                  +  AA   +  ++  L E        V     + G             A+
Sbjct: 287 RVVWLDFVPAAADPSKQEVLQLLQE----KLDEV-VRSLNTGAGGAVKRKKKAAPAV 338

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           G+  L +AA   Q +IV  L E   + A   L+ Q+ RG+T LH   A+ +
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQAD--LRRQDSRGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 15/135 (11%)

Query: 37  GDTALHIAAAAGQTNIVSELVE---------IMGENASNVLKIQNDRGDTALHLAAALGN 87
           G TALHIA      + V  LVE                         G+  L LAA    
Sbjct: 93  GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 88  EAMCHCMASKDREL--ISAADEG----LANCSWSSGNLEDKEHHREKRGTYMGLSSNDDH 141
             + H +     +   +   D      L      + N  +      K    + +      
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212

Query: 142 GKSSRDSRPDKDGDT 156
             ++ ++  + DG +
Sbjct: 213 PDTNLEALLNNDGLS 227

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 30  EAKLTRSGDTALHIAA---AAGQTNIVSELVEIMGENASNVLKIQND-------RGDTAL 79
           E +   +G T L  A    +AG+ + +  L++I  E   N+ +  N        RG TAL
Sbjct: 39  EFREPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTAL 97

Query: 80  HLAAALGNEAM 90
           H+A     +  
Sbjct: 98  HIAIERRCKHY 108

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 37  GDTALHIAAAAG-----QTNIVSELVEIMGENASNV------LKIQNDRGDTALHLAAAL 85
           G+T LH   A        T  V+++ +++    + +        + N+ G + L +AA  
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

Query: 86  GNEAM 90
           G   +
Sbjct: 236 GKIGI 240

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEA 89
           + +  R G TALH+AA   +  +V  LV    E  +++ +++++RG TAL LA  +    
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALV----ELGADI-EVEDERGLTALELAREILKTT 158

Query: 90  M 90
            
Sbjct: 159 P 159

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 15/70 (21%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           G     I    G +             A++V        +T    AA   +E        
Sbjct: 15  GAMEYLIEWKDGHS----PSWVPSSYIAADV----VSEYETPWWTAARKADEQAL----- 61

Query: 97  KDRELISAAD 106
              +L+   D
Sbjct: 62  --SQLLEDRD 69

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           +T    AA       +S+L+E    +    +   ++ G TAL   A LG++  
Sbjct: 45 YETPWWTAARKADEQALSQLLE--DRD----VDAVDENGRTALLFVAGLGSDKC 92

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 12/71 (16%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           G TAL   A  G    V  L E      +++       G TALH+AA      +      
Sbjct: 77  GRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTALHMAAGYVRPEVV----- 127

Query: 97  KDRELISA-AD 106
               L+   AD
Sbjct: 128 --EALVELGAD 136

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           D  L  AA AG    V +L  +   N     +    R  T LH AA    
Sbjct: 8  ADRQLLEAAKAGDVETVKKLCTVQSVNC----RDIEGRQSTPLHFAAGYNR 54

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEA 89
                   +TALH A  AG T ++S L+    E  +NV   QN +G++AL LA    N  
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLL----EAGANV-DAQNIKGESALDLAKQRKNVW 224

Query: 90  MCHCMASKDRELISA-ADEGLAN 111
           M +        L  A   +G  N
Sbjct: 225 MINH-------LQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
            T LH AA   + ++V   +       + V ++  D   T LH A   G+ +M
Sbjct: 42 NVTLLHWAAINNRIDLVKYYI----SKGAIVDQLGGDLNSTPLHWATRQGHLSM 91

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.2 bits (103), Expect = 9e-05
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEA 89
           +        T LH A   G  ++V +L+    +  ++   + +  G + +HLAA  G+ +
Sbjct: 69  DQLGGDLNSTPLHWATRQGHLSMVVQLM----KYGADP-SLIDGEGCSCIHLAAQFGHTS 123

Query: 90  M 90
           +
Sbjct: 124 I 124

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
              +  A   G      ELV    E   +V +  +    T LH AA    
Sbjct: 9  STWDIVKATQYGIYERCRELV----EAGYDV-RQPDKENVTLLHWAAINNR 54

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           G + +H+AA  G T+IV+ L+        +V  + +  G T L  AA   + 
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLI----AKGQDV-DMMDQNGMTPLMWAAYRTHS 155

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           G TAL+ A   G  +IV  L           L  QN  GDTALH AA  G   + 
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIE----LNQQNKLGDTALHAAAWKGYADIV 156

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 11/81 (13%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
            + G   +  A    +     EL    G+     +    D  DT      + G   +   
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGD-----IIYITDMSDTNWWKGTSKGRTGLIPS 63

Query: 94  MASKDRE------LISAADEG 108
               ++       L  AA  G
Sbjct: 64  NYVAEQAESIDNPLHEAAKRG 84

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           GDTALH AA  G  +IV  L+       +    ++N     A  +A      ++      
Sbjct: 140 GDTALHAAAWKGYADIVQLLL----AKGART-DLRNIEKKLAFDMATNAACASLLKKKQG 194

Query: 97  KDRELISAADEGLANCSWSSGN 118
            D     +  E   +   S   
Sbjct: 195 TDAVRTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
             S D  LH AA  G  + + E +    +N   V    +  G TAL+ A   G+
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECL----DNRVGV-NGLDKAGSTALYWACHGGH 118

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 10/54 (18%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          T   DT      + G+T ++           SN +  Q +  D  LH AA  GN
Sbjct: 42 TDMSDTNWWKGTSKGRTGLIP----------SNYVAEQAESIDNPLHEAAKRGN 85

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
            D+    A A G+T I++ +++       ++    N  G  AL  AA  G+         
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLK---HATPDL-NKHNRYGGNALIPAAEKGHIDNV----- 122

Query: 97  KDRELISAADEGLAN 111
             + L+     G  +
Sbjct: 123 --KLLLED---GRED 132

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 17/84 (20%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           G+T L+IA       I   L+    +  +++  +QN   D+    A A G   +   M  
Sbjct: 39  GNTPLNIAVHNNDIEIAKALI----DRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLK 93

Query: 97  --------KDRE----LISAADEG 108
                    +R     LI AA++G
Sbjct: 94  HATPDLNKHNRYGGNALIPAAEKG 117

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 35  RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCH 92
           R G  AL  AA  G  + V  L+E   E+    +  QND G TAL  A  L      +
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGRED----IDFQNDFGYTALIEAVGLREGNQLY 157

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC-- 91
              G  AL  A  +   + V  +  ++ ++ ++V  ++ +RG T L LA    +  +   
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQR 237

Query: 92  ---HCMA---SKDRE----LISAADEG 108
                       D +    L+ A +  
Sbjct: 238 LLEQEHIEINDTDSDGKTALLLAVELK 264

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 24  NNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA 83
                 + +L + G TAL  AA  G   ++  L++ MG +    +   ++ G  AL  A 
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD----VNACDNMGRNALIHAL 190

Query: 84  ALGNEAMCHCMASKDRELISA-AD 106
              +++    +      L+   AD
Sbjct: 191 LSSDDSDVEAIT---HLLLDHGAD 211

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G T L +A       +V  L+E         +   +  G TAL LA  L  + +
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKI 268

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           +  L  A      ++V +L+    E  +NV   + + G T LH A  +  E
Sbjct: 5  DNHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRE 52

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 37  GDTALHIAAAAGQTNIVSELVEI-----MGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G TA   AA  G+   +  L +      +        +     G TAL  AA  G+  +
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G T   +AA AG   ++   +       ++V    +  G TA   AA  G    
Sbjct: 72  GATPFLLAAIAGSVKLLKLFL----SKGADV-NECDFYGFTAFMEAAVYGKVKA 120

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 30 EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
            +    G T LH A    + +IV  L+     + ++   ++   G T   LAA  G+
Sbjct: 32 NFQEEEGGWTPLHNAVQMSREDIVELLL----RHGADP-VLRKKNGATPFLLAAIAGS 84

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.2 bits (111), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 16/84 (19%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC-- 93
           +   ++H  AA G+   ++  +    E  + +    ++ G T L  AAA G  A+     
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRI----EQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLL 56

Query: 94  -------MASKDRE--LISAADEG 108
                  +  K RE  L  A  +G
Sbjct: 57  QNGADPQLLGKGRESALSLACSKG 80

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.8 bits (110), Expect = 5e-06
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           G T L  A        V  L+E    + ++   I+ D G  ++ LA ALG  
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLE----SGADP-TIETDSGYNSMDLAVALGYR 148

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.9 bits (105), Expect = 3e-05
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 16/83 (19%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
            ++AL +A + G T+IV  L+    +   +V    +  G T L  A    +      +  
Sbjct: 69  RESALSLACSKGYTDIVKMLL----DCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE 123

Query: 97  -------KDRE----LISAADEG 108
                  +       +  A   G
Sbjct: 124 SGADPTIETDSGYNSMDLAVALG 146

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.5 bits (104), Expect = 3e-05
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
          G T L  AAA GQ  +V  L++    N ++  ++     ++AL LA + G  
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQ----NGADP-QLLGKGRESALSLACSKGYT 82

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 39/271 (14%), Positives = 85/271 (31%), Gaps = 84/271 (30%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
            +T L +A  A +  +V+ L+    +  ++   I N    +ALH AAA  +  M      
Sbjct: 166 ENTPLMLAVLARRRRLVAYLM----KAGADP-TIYNKSERSALHQAAANRDFGMM----- 215

Query: 97  KDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDT 156
               ++++            G++E+                             D++G T
Sbjct: 216 --VYMLNSTKLK--------GDIEEL----------------------------DRNGMT 237

Query: 157 FSVPETPPVLENDQIFQSRNICLESAVAV-----HNKDGNARDETATAAVQELKFMKKKD 211
                    L    +  + N   +   +           +        +       +K  
Sbjct: 238 --------AL----MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS-------EKYK 278

Query: 212 QQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL 271
              GR  T +  AA++    +V+ ++          D + K  ++LA +  +  +   L+
Sbjct: 279 ---GR--TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 333

Query: 272 DRKMLGESDLNIFEHVDIKGNSALHLAAKFG 302
            +     + +     VD   ++A  LA    
Sbjct: 334 QQG----ASVEA---VDATDHTARQLAQANN 357

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           S  +ALH AAA     ++  ++        ++ +  +  G TAL + A     
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKG-DI-EELDRNGMTALMIVAHNEGR 248

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
            G TALH AA      IV  LV   G N       Q++ G T + LAA  G 
Sbjct: 278 KGRTALHYAAQVSNMPIVKYLVGEKGSN----KDKQDEDGKTPIMLAAQEGR 325

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 6/71 (8%)

Query: 21  AYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALH 80
           +Y+     +  +L              G       L +    N               LH
Sbjct: 45  SYDGYIKRQRNELQHYSLYPNPQGYGNGND----FLGDFNHTNLQIP-TEPEPESPIKLH 99

Query: 81  LAAALGNEAMC 91
             AA G+ A+ 
Sbjct: 100 TEAA-GSYAIT 109

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G T + +AA  G+  +V  L+    +  ++V +  +    TA  LA A  +  +
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLI----QQGASV-EAVDATDHTARQLAQANNHHNI 361

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G T LH A +A    +   L+      A+++   +   G T L LAA L  E M
Sbjct: 90  GRTPLHAAVSADAQGVFQILIR---NRATDL-DARMHDGTTPLILAARLAVEGM 139

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G T L +AA      ++ +L+     + ++V    +D G +ALH AAA+ N   
Sbjct: 124 GTTPLILAARLAVEGMLEDLI----NSHADV-NAVDDLGKSALHWAAAVNNVDA 172

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           G +ALH AAA    +    L+    +N +N   +QN+R +T L LAA  G+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLL----KNGANK-DMQNNREETPLFLAAREGS 202

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 35  RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           R+G+TALH+AA   +++    L+    E +++   IQ++ G T LH A +   + + 
Sbjct: 55  RTGETALHLAARYSRSDAAKRLL----EASADA-NIQDNMGRTPLHAAVSADAQGVF 106

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 37 GDTALHIAAAAGQTNIVS---------ELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          G T L IA+ +G                ++       +++    +  G+TALHLAA    
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 4/76 (5%)

Query: 34  TRSGDTALHIAAAAGQTNIVS--ELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           T+ G T        G  +I    EL +I  E  +++           +            
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDEN 130

Query: 92  HCMASKDRELISA-AD 106
             +         +   
Sbjct: 131 EMIPLYKLIFSQSGLQ 146

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 4   NCLSKF------AMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELV 57
           N +S++      AM G +++F++ +E      E K +      L+            ++ 
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKIS 58

Query: 58  EIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISA-AD 106
             +    +++ K +   G T        G   +        +  +   AD
Sbjct: 59  MFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITG-TTELCKIFLEKGAD 106

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 4/59 (6%)

Query: 35  RSGDTALHIAAAAGQTNIV--SELVE-IMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           +     +         +      L + I  ++   +  I++  G TAL           
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIA 169

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 217 KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENR----QTGIYKLLLD 272
           +   +  AA +G  E   ++ +            K N++   + N     +  I   L++
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFE--KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 273 RKMLGESDLNIFEHVDIKGNSALHLAAKFG 302
           +     +D+        +G +      + G
Sbjct: 64  KG----ADIKS---RTKEGTTLFFPLFQGG 86

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.4 bits (109), Expect = 6e-06
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           G+  LH+AA  G   +V  LV+     ASNV   +N +GDTA  LA   G  
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVK---HTASNV-GHRNHKGDTACDLARLYGRN 150

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           G   +H AA AG  + +  L+    E  ++V  I+++ G+  LHLAA  G+  +   +  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLL----EFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124

Query: 97  KDRELISAADE 107
                +   + 
Sbjct: 125 HTASNVGHRNH 135

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.4 bits (96), Expect = 4e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA 83
              L  AAA G    ++ L+    +N  NV   QN  G TAL +  
Sbjct: 5  WGNELASAAARGDLEQLTSLL----QNNVNV-NAQNGFGRTALQVMK 46

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.9 bits (105), Expect = 9e-06
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           D     A   G  + V + V        +V     + G   LH AA  G 
Sbjct: 7  CDKEFMWALKNGDLDEVKDYV----AKGEDV-NRTLEGGRKPLHYAADCGQ 52

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.0 bits (100), Expect = 4e-05
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          G   LH AA  GQ  I+  L+       +++    +    T L  A   G+
Sbjct: 40 GRKPLHYAADCGQLEILEFLL----LKGADI-NAPDKHHITPLLSAVYEGH 85

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 25  NPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAA 84
                 A      +TALH+A  +     +  +V+ + +N+ N+   Q  +G TALH    
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSVDRTSLH-IVDFLVQNSGNL-DKQTGKGSTALHYCCL 214

Query: 85  LGNEAMC 91
             N    
Sbjct: 215 TDNAECL 221

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA 83
           S D  L  AAA GQ   V +L+    E  ++     N  G   + +  
Sbjct: 10 GSSDAGLATAAARGQVETVRQLL----EAGADP-NALNRFGRRPIQVMM 53

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 34  TRSGDT-ALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCH 92
             +  T  +H AA  G  + +  L       A   L + +  G   + LA   G+  +  
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHR---AGAR--LDVCDAWGRLPVDLAEEQGHRDIA- 127

Query: 93  CMASKDRELISA-AD 106
                 R L +A  D
Sbjct: 128 ------RYLHAATGD 136

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 27 MSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALG 86
          + R + +       L  AA AGQ + V  L+     N ++V   ++  G T LHLAA  G
Sbjct: 14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILM----ANGADV-AAKDKNGSTPLHLAARNG 68

Query: 87 NE 88
          + 
Sbjct: 69 HL 70

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA 83
                 L  AAA G+   V  L+    E  +N     N  G   + +  
Sbjct: 9  MEPSADWLATAAARGRVEEVRALL----EAGANP-NAPNSYGRRPIQVMM 53

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 39  TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
             +H AA  G  + +  L       A   L +++  G   + LA  LG+ 
Sbjct: 80  RPVHDAAREGFLDTLVVLHR---AGAR--LDVRDAWGRLPVDLAEELGHR 124

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 15/82 (18%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           G + +H AA  G  + +  LV    E+ ++V  + +  G   +HLA   G+ A+   +A+
Sbjct: 68  GTSPVHDAARTGFLDTLKVLV----EHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 97  ------KDRE----LISAADEG 108
                 +D      L  A   G
Sbjct: 123 ESDLHRRDARGLTPLELALQRG 144

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 4/47 (8%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA 83
              L  AAA G    V  L+     +        N  G TAL +  
Sbjct: 2  AGDRLSGAAARGDVQEVRRLLHRELVH----PDALNRFGKTALQVMM 44

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
           G   +H+A   G T +VS L       + ++   ++ RG T L LA   G +
Sbjct: 101 GALPIHLAVQEGHTAVVSFLAA----ES-DL-HRRDARGLTPLELALQRGAQ 146

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G T LH A +A    +   L+      A+++   +   G T L LAA L  E M
Sbjct: 58  GRTPLHAAVSADAQGVFQILIR---NRATDL-DARMHDGTTPLILAARLAVEGM 107

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
              G T L +AA      ++ +L+     + ++V    +D G +ALH AAA+ N   
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLI----NSHADV-NAVDDLGKSALHWAAAVNNVDA 140

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           G +ALH AAA    +    L+    +N +N   +QN+R +T L LAA  G+
Sbjct: 125 GKSALHWAAAVNNVDAAVVLL----KNGANK-DMQNNREETPLFLAAREGS 170

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.5 bits (96), Expect = 6e-04
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
          R+G+TALH+AA   +++    L+    E +++   IQ++ G T LH A +   + +
Sbjct: 23 RTGETALHLAARYSRSDAAKRLL----EASADA-NIQDNMGRTPLHAAVSADAQGV 73

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.9 bits (110), Expect = 2e-05
 Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 35  RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           +  D+ LH         +   L+    +  ++  + +N  G   + L       A  
Sbjct: 220 KGQDSPLHAVVRTASEELACLLM----DFGADT-QAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
             S  + +H AA  G    +  L+         V  I      + LH A   G+ + 
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLI----SQGWAV-NIITADHVSPLHEACLGGHLSC 107

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.6 bits (104), Expect = 9e-05
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
                T L++A    Q   V +L+    E+ ++V +      D+ LH      +E +
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLL----ESGADVNQ--GKGQDSPLHAVVRTASEEL 237

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           T    + LH A   G  + V  L+    ++ + V         T L  A   G+    
Sbjct: 89  TADHVSPLHEACLGGHLSCVKILL----KHGAQV-NGVTADWHTPLFNACVSGSWDCV 141

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
             + +H AA  G    V+ L+        N+   +     T L+LA      A 
Sbjct: 157 LASPIHEAARRGHVECVNSLI----AYGGNI-DHKISHLGTPLYLACENQQRAC 205

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           T    T L  A  +G  + V+ L+    ++ ++V         + +H AA  G+   
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLL----QHGASVQP--ESDLASPIHEAARRGHVEC 172

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.3 bits (101), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          +G T LH+AA  G   +V  L+E  G +    +  ++  G T LHLAA  G+
Sbjct: 1  NGRTPLHLAARNGHLEVVKLLLEA-GAD----VNAKDKNGRTPLHLAARNGH 47

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.3 bits (101), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 30 EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           AK  ++G T LH+AA  G   +V  L+E      ++V   ++  G T LHLAA  G+
Sbjct: 29 NAK-DKNGRTPLHLAARNGHLEVVKLLLE----AGADV-NAKDKNGRTPLHLAARNGH 80

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
            +  LH AA    T IV  L+     +  +     +D+G+TAL+ A   GN
Sbjct: 62  NEFPLHQAATLEDTKIVKILL----FSGLDD-SQFDDKGNTALYYAVDSGN 107

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
              G+TAL+ A  +G    V   V    +    ++        T+ + A  L + ++
Sbjct: 92  DDKGNTALYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSI 144

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 9/58 (15%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDR-GDTALHLAAALGNEAM 90
             G +A + A A     +V  L+       +      N    +  LH AA L +  +
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLL----NAGALK----NLLENEFPLHQAATLEDTKI 77

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
             T+ + A      +IVS  +    E  S           + +H+    G+
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLS---EIPST---FDLAILLSCIHITIKNGH 173

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
               LH AA+ G   ++  L         + +  Q+ +G T L  A A G+
Sbjct: 140 NQIPLHRAASVGSLKLIELLC----GLGKSAVNWQDKQGWTPLFHALAEGH 186

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           +  LH A    +   V EL+       S +   ++  G   LH + +     +
Sbjct: 2  SNYPLHQACMENEFFKVQELLH---SKPSLL-LQKDQDGRIPLHWSVSFQAHEI 51

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA 83
            + G T L  A A G  +    LVE  G        + +++G  A  +A 
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
           T  G T LH+A       +   L+    EN ++V +I++      LH AA++G+  +   
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLI----ENGASV-RIKDKFNQIPLHRAASVGSLKLIEL 158

Query: 94  MASKDRELISAADE 107
           +    +  ++  D+
Sbjct: 159 LCGLGKSAVNWQDK 172

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
          G   LH + +     I S L+    EN  N+    +D G T  H+A ++GN  +
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLS-KMENV-NLDDYPDDSGWTPFHIACSVGNLEV 87

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVE-IMGENASNVLKIQNDRGDTALHLAAALGN 87
             SG T  HIA + G   +V  L +  +  +    L    ++G T LHLA     
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPD----LNKITNQGVTCLHLAVGKKW 119

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 13/84 (15%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMA 95
           S +TALH A A+       ++ E++    +NV   +N    T LH+AA   +  +   + 
Sbjct: 210 SHETALHCAVASLHPKRK-QVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 96  S-------KDRE----LISAADEG 108
                    D      L  AA  G
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAG 291

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
                T LH+AA   +  IV  L+    ++ ++V   ++  G   LH A + G+  +
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLL----QHGADV-HAKDKGGLVPLHNACSYGHYEV 106

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
            + G   LH A + G   +   L+    ++ + V    +    T LH AA+     +C
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLL----KHGACV-NAMDLWQFTPLHEAASKNRVEVC 140

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
            +   T LH+AA     +++  L     ++ + +    +  G TALH AA  G+   C
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLH----KHGAKM-NALDSLGQTALHRAALAGHLQTC 296

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
             T LH AA+  +  + S L+     + ++   + N  G +A+ +A        
Sbjct: 124 QFTPLHEAASKNRVEVCSLLL----SHGADP-TLVNCHGKSAVDMAPTPELRER 172

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA 83
              G TALH AA AG       L+       S+   I + +G TA  +  
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLL----SYGSDP-SIISLQGFTAAQMGN 321

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 16/86 (18%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
           ++ G+T LH AA  G    V +L+       ++V   ++  G+T LHLAA  G+  +   
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLL----SKGADV-NARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 94  MAS-------KDRE----LISAADEG 108
           + +       + ++       A   G
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNG 86

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 41.2 bits (98), Expect = 9e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
          G+T LH+AA  G   IV  L+       ++V   ++  G+T  HLA   G+ 
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLA----KGADV-NARSKDGNTPEHLAKKNGHH 88

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
             TALH A +AG T IV  L++        V   ++D G + LH+AA+ G + +   +  
Sbjct: 40  SRTALHWACSAGHTEIVEFLLQ----LGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLV 94

Query: 97  KDRELISAADEGLANCSWSSGN 118
           K   + +    G     +++  
Sbjct: 95  KGAHVNAVNQNGCTPLHYAASK 116

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
             +G + LHIAA+AG      E+V+ +    ++V    N  G T LH AA+     +   
Sbjct: 70  DDAGWSPLHIAASAGXD----EIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVM 124

Query: 94  MASKDRELISAADEGLANCSWSSGN 118
           +        +           ++  
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAK 149

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 42.7 bits (102), Expect = 3e-05
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 16/84 (19%)

Query: 36  SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMA 95
           +G T LH+AA  G   +V  L+    E  ++V   ++  G T LHLAA  G+  +   + 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL----EAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 96  S-------KDRE----LISAADEG 108
                   KD+     L  AA  G
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNG 79

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.6 bits (99), Expect = 6e-05
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
            AK  ++G T LH+AA  G   +V  L+E  G +    +  ++  G T LHLAA  G+ 
Sbjct: 62  NAK-DKNGRTPLHLAARNGHLEVVKLLLEA-GAD----VNAKDKNGRTPLHLAARNGHL 114

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
            +  LH AA +G  +I   L+        ++    N  GD+ LH+AA    
Sbjct: 144 ENICLHWAAFSGCVDIAEILL----AAKCDL-HAVNIHGDSPLHIAARENR 189

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 4e-05
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 13/73 (17%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           GD+ LHIAA   + + V   +     +    + ++N  G+T L  A+             
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSR-DSD----VTLKNKEGETPLQCASLNSQVWSA----- 226

Query: 97  KDRELISA-ADEG 108
              ++  A  D  
Sbjct: 227 --LQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 5e-05
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
              G T LH+AA  G   +V  L+        +V   Q+D G T +  A    +
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSN---GQMDV-NCQDDGGWTPMIWATEYKH 123

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.2 bits (98), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           ++  + LH AA AG  +I   LV    +  +N+    ++   T L  AA   +
Sbjct: 8  HQNKRSPLHAAAEAGHVDICHMLV----QAGANI-DTCSEDQRTPLMEAAENNH 56

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          +    T L  AA       V  L+    +  + V   ++  G T LHLAA  G+
Sbjct: 41 SEDQRTPLMEAAENNHLEAVKYLI----KAGALV-DPKDAEGSTCLHLAAKKGH 89

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.1 bits (95), Expect = 8e-04
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           G T +  A      ++V  L+       S++  I+++  +  LH AA  G 
Sbjct: 111 GWTPMIWATEYKHVDLVKLLL----SKGSDI-NIRDNEENICLHWAAFSGC 156

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 32 KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          K        L  ++  G+ ++V  ++        +   + ND G TALH A   G+
Sbjct: 32 KFNPLPLALLLDSSLEGEFDLVQRII----YEVDDP-SLPNDEGITALHNAVCAGH 82

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           G TALH A  AG T IV  LV    +   NV    +  G T LH AA+  N  +C
Sbjct: 70  GITALHNAVCAGHTEIVKFLV----QFGVNV-NAADSDGWTPLHCAASCNNVQVC 119

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 8/52 (15%), Positives = 13/52 (25%), Gaps = 6/52 (11%)

Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          +G  +L            SE +   G          N      L  ++  G 
Sbjct: 4  TGQVSLPPGKRTNLRKTGSERIAH-GMRVK-----FNPLPLALLLDSSLEGE 49

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           G T LH A   G   +V  L+    ++ + V      + D+ LH AA  G+  +   + S
Sbjct: 43  GWTPLHEACNHGHLKVVELLL----QHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

Query: 97  -------KDRE----LISAADEG 108
                   +      +    DE 
Sbjct: 98  YGASRNAVNIFGLRPVDYTDDES 120

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.0 bits (100), Expect = 6e-05
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE 88
            D+ LH AA  G  +IV  L+       ++     N  G   +        +
Sbjct: 76  NDSPLHDAAKNGHVDIVKLLL----SYGASR-NAVNIFGLRPVDYTDDESMK 122

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.0 bits (100), Expect = 6e-05
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          G+T LHIA+  G    V  L+    +N S+   +++  G T LH A   G+
Sbjct: 10 GETLLHIASIKGDIPSVEYLL----QNGSDP-NVKDHAGWTPLHEACNHGH 55

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.0 bits (100), Expect = 9e-05
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
              L  AA AGQ + V  L+     N +      +  G + LHLAA  G+
Sbjct: 2  LGKKLLEAARAGQDDEVRILM----ANGAPFTT--DWLGTSPLHLAAQYGH 46

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.4 bits (96), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
             TALH A       +V  L+    +  ++V   Q+    TA  ++   GNE +
Sbjct: 100 KMTALHWATEHNHQEVVELLI----KYGADV-HTQSKFCKTAFDISIDNGNEDL 148

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          G + LH+AA  G  +    L+        +    +     T LH+AA+ G+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLL----RAGVSR-DARTKVDRTPLHMAASEGH 79

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.9 bits (92), Expect = 9e-04
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           T+   T LH+AA+ G  NIV  L+    ++ ++V   ++    TALH A    +
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLL----KHGADV-NAKDMLKMTALHWATEHNH 112

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           G T LH+AA  G   IV  L+    +N ++V   Q+  G TA  ++   GNE +   +  
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLL----KNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167

Query: 97  KD 98
            +
Sbjct: 168 LN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
              L  AA AG+ + V  L+     N ++V   ++  G T LHLAA  G+
Sbjct: 14 LGKKLLEAARAGRDDEVRILM----ANGADV-NAEDASGWTPLHLAAFNGH 59

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           G T L +AA  G   IV  L+    +N ++V    +  G T LHLAA  G+
Sbjct: 80  GMTPLRLAALFGHLEIVEVLL----KNGADV-NANDMEGHTPLHLAAMFGH 125

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
          G T LH+AA  G   IV  L+    +N ++V    +  G T L LAA  G+
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLL----KNGADV-NAVDHAGMTPLRLAALFGH 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           G   LH AA+ G  +I   L+       ++V    N  GDT L +A     E +     +
Sbjct: 106 GWIPLHAAASCGYLDIAEYLI----SQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 97  KDRELISAAD 106
           +    I AA 
Sbjct: 161 RQGVDIEAAR 170

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
            +SG TALH+AAA G T ++  L+    +   +V  I++  G T LH AA  G E  C
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLI----QARYDV-NIKDYDGWTPLHAAAHWGKEEAC 248

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           G TALH A      ++V  LV    EN +N+    ++ G   LH AA+ G 
Sbjct: 73  GLTALHQACIDDNVDMVKFLV----ENGANI-NQPDNEGWIPLHAAASCGY 118

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
           G T LH AA+   T I   LV    ++ + +       G TA         
Sbjct: 87  GWTPLHCAASCNDTVICMALV----QHGAAIFATTLSDGATAFEKCDPYRE 133

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 32 KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
          +   +    L  AA  G+  +V + V    +  ++     N+ G TALH A    N ++
Sbjct: 16 RARLNPLVLLLDAALTGELEVVQQAV----KEMNDP-SQPNEEGITALHNAICGANYSI 69

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
           G TALH A      +IV  L+       +NV    +  G T LH AA+  +  +C
Sbjct: 54  GITALHNAICGANYSIVDFLI----TAGANV-NSPDSHGWTPLHCAASCNDTVIC 103

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.2 bits (98), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
            T L +A   G  N + +LV    EN   + + ++  G TAL  A       +
Sbjct: 35 NRTPLMVACMLGMENAIDKLV----ENFDKL-EDKDIEGSTALIWAVKNNRLGI 83

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G+T L +A+  G++ IV +L+    E  +++   ++  G TA   A   G + +
Sbjct: 134 GETPLIVASKYGRSEIVKKLL----ELGADI-SARDLTGLTAEASARIFGRQEV 182

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 39.7 bits (94), Expect = 8e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           G TAL  A    +  I  +L+       SNV   ++  G T L  +   G   M
Sbjct: 68  GSTALIWAVKNNRLGIAEKLL----SKGSNV-NTKDFSGKTPLMWSIIFGYSEM 116

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 23  ENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA 82
           +              +  LH+A        +  LV+ + +N  ++   +   G+TALH A
Sbjct: 176 DFGQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFIIQNGGHL-DAKAADGNTALHYA 233

Query: 83  AALGNEAMC 91
           A        
Sbjct: 234 ALYNQPDCL 242

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
              L  AA AGQ     + V I+  N ++V   +++ G T L+LA A G+
Sbjct: 14 LGKKLLEAARAGQD----DEVRILMANGADV-NAKDEYGLTPLYLATAHGH 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	523
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-39  Score=331.55  Aligned_cols=285  Identities=16%  Similarity=0.139  Sum_probs=197.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.|+++  +.+.+..+..|.||||+|+..|+.+++++|++.+.     +++.+|.+|+||||+|+
T Consensus        16 t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~   88 (437)
T 1n11_A           16 TPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-----KVNAKAKDDQTPLHCAA   88 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC-----CSSCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCCCCCCCCCHHHHHH
Confidence            578999999999999999988  66777888899999999999999999999998864     48888999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCccc-chhhhhhcCCccCCccCCCCCCCccccCCCCCCCC-c-cC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLED-KEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDT-F-SV  159 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~-~-~~  159 (523)
                      +.|+.+++++|+++|++++..+..+.+ ++.++..++.+ ++.|+++   +.+.+..+..|.||||.|+...... . .+
T Consensus        89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  165 (437)
T 1n11_A           89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK---EASQACMTKKGFTPLHVAAKYGKVRVAELL  165 (437)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC---CCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999988877777766 77777666665 3677766   6667777777778887666422221 1 22


Q ss_pred             CCCCCCC----Cccccchhhh---HHHHHHHHhhccCCC-------cchhhhh----HHHHHHHHHHhc----ccccCCC
Q 041922          160 PETPPVL----ENDQIFQSRN---ICLESAVAVHNKDGN-------ARDETAT----AAVQELKFMKKK----DQQSGRK  217 (523)
Q Consensus       160 l~~~~~~----~~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~~~----~~~~~v~~Ll~~----~~~~~~g  217 (523)
                      ++.+.+.    ..+..|.++.   ...+.++.+++....       +.++.|.    +..++++.|++.    +..+..|
T Consensus       166 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  245 (437)
T 1n11_A          166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  245 (437)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            3333222    1223333332   233444444443221       1223332    234567777665    4455667


Q ss_pred             ChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHH
Q 041922          218 ATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHL  297 (523)
Q Consensus       218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~  297 (523)
                      .||||+|+..|+.+++++|+++ +++++..|..|+||||+|+..|+.+++++|+++|+       ++|.+|..|+||||+
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-------~~~~~~~~g~t~L~~  317 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-------MVDATTRMGYTPLHV  317 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC-------CTTCCCSSCCCHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCc-------cCCCCCCCCCCHHHH
Confidence            7777777777777777777765 66677777777777777777777777777777776       667777777777777


Q ss_pred             HHHhCCCCC
Q 041922          298 AAKFGEYGP  306 (523)
Q Consensus       298 Aa~~~~~~~  306 (523)
                      |+..|+.++
T Consensus       318 A~~~g~~~~  326 (437)
T 1n11_A          318 ASHYGNIKL  326 (437)
T ss_dssp             HHHSSCSHH
T ss_pred             HHHcCcHHH
Confidence            777766543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-38  Score=328.26  Aligned_cols=314  Identities=16%  Similarity=0.101  Sum_probs=256.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.|++.  +.+++.++.+|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+
T Consensus        49 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~g~t~L~~A~  121 (437)
T 1n11_A           49 TPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA-----NPNLATTAGHTPLHIAA  121 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-----CTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC-----CCCCCCCCCCcHHHHHH
Confidence            589999999999999999998  67778899999999999999999999999999864     48889999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCC-c-cC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDT-F-SV  159 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~-~-~~  159 (523)
                      +.|+.+++++|++.+++....+..+.+ ++.++..++.++ ++|+++   +.+++..|..|.||||.|+...... . .+
T Consensus       122 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  198 (437)
T 1n11_A          122 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER---DAHPNAAGKNGLTPLHVAVHHNNLDIVKLL  198 (437)
T ss_dssp             HHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999988877777776 777777777764 888887   8899999999999999887533222 2 33


Q ss_pred             CCCCCCC----Cccccchhhh---HHHHHHHHhhccC-------CCcchhhhh----HHHHHHHHHHhc----ccccCCC
Q 041922          160 PETPPVL----ENDQIFQSRN---ICLESAVAVHNKD-------GNARDETAT----AAVQELKFMKKK----DQQSGRK  217 (523)
Q Consensus       160 l~~~~~~----~~~~~~~~~~---~~~~~~~~l~~~~-------~~~~~~~~~----~~~~~v~~Ll~~----~~~~~~g  217 (523)
                      ++.+.+.    ..+..|.++.   +..+.++.+++..       ..+.++.|.    +..+++++|+++    +..+..|
T Consensus       199 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g  278 (437)
T 1n11_A          199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG  278 (437)
T ss_dssp             GGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTC
T ss_pred             HhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCC
Confidence            4444332    2233444433   2344555555432       223344444    346799999988    5677899


Q ss_pred             ChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHH
Q 041922          218 ATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHL  297 (523)
Q Consensus       218 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~  297 (523)
                      .||||+|+..|+.+++++|+++ +++++.+|..|+||||+|+.+|+.+++++|+++|+       ++|.+|..|+||||+
T Consensus       279 ~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-------d~n~~~~~g~t~L~~  350 (437)
T 1n11_A          279 LTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-------DVNAKTKLGYSPLHQ  350 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC-------CTTCCCTTSCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC-------CCCCCCCCCCCHHHH
Confidence            9999999999999999999998 89999999999999999999999999999999999       999999999999999


Q ss_pred             HHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhh
Q 041922          298 AAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHK  354 (523)
Q Consensus       298 Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~  354 (523)
                      |+..|+.+++                   +.++..++ .+.+|.+|+||+++|.+...
T Consensus       351 A~~~g~~~iv-------------------~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          351 AAQQGHTDIV-------------------TLLLKNGASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             HHHTTCHHHH-------------------HHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             HHHCChHHHH-------------------HHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence            9999986543                   22233333 58899999999999987643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.2e-38  Score=317.65  Aligned_cols=295  Identities=16%  Similarity=0.104  Sum_probs=237.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      .++|+.|+..|+.+.++.++.+. +.+.+..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA-----DVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCccCCCCCcHHHHH
Confidence            46899999999999999999864 56778899999999999999999999999999864     5899999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVP  160 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l  160 (523)
                      +..|+.+++++|+++|++++..+..+.+ +++++..++.++ ++|+++   +++++..+..|.||+|.++..        
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~~~l~~a~~~--------  167 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH---GADPTLVNCHGKSAVDMAPTP--------  167 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHCSSH--------
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCccccCCCCcchHHHhhh--------
Confidence            9999999999999999999888877777 778887777774 889988   899999999999999988631        


Q ss_pred             CCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHc---ChHHHH
Q 041922          161 ETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKM---GVTEMV  233 (523)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~---g~~~~v  233 (523)
                                  ...    ........... ..........+.++.++..    ...+..|.||||+|+..   ++.+++
T Consensus       168 ------------~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~  230 (351)
T 3utm_A          168 ------------ELR----ERLTYEFKGHS-LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA  230 (351)
T ss_dssp             ------------HHH----HHHHHHHHHHH-HHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHH
T ss_pred             ------------hhH----HHHHhhhcccH-HHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHH
Confidence                        100    00000000000 0001111123355555544    34557899999999999   668999


Q ss_pred             HHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcch
Q 041922          234 EKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAA  313 (523)
Q Consensus       234 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~  313 (523)
                      ++|++. +++++.+|.+|+||||+|+.+|+.+++++|+++|+       ++|.+|..|+||||+|+..|+.+++      
T Consensus       231 ~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-------~~n~~d~~g~t~L~~A~~~~~~~~v------  296 (351)
T 3utm_A          231 ELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA-------KMNALDSLGQTALHRAALAGHLQTC------  296 (351)
T ss_dssp             HHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSCCHHHHHHHHTCHHHH------
T ss_pred             HHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-------CCCCcCCCCCCHHHHHHHcCcHHHH------
Confidence            999997 89999999999999999999999999999999999       9999999999999999999996543      


Q ss_pred             hhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhhhHHh
Q 041922          314 LQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHKELVK  358 (523)
Q Consensus       314 l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~~l~~  358 (523)
                                   +.++..++ .+.+|.+|+||+++|.+.-.+++.
T Consensus       297 -------------~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~l~  329 (351)
T 3utm_A          297 -------------RLLLSYGSDPSIISLQGFTAAQMGNEAVQQILS  329 (351)
T ss_dssp             -------------HHHHHTTCCTTCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             -------------HHHHHcCCCCCCcCCCCCChhhhhhHHHHHHHH
Confidence                         22233333 589999999999999776555443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.9e-37  Score=296.10  Aligned_cols=236  Identities=18%  Similarity=0.106  Sum_probs=181.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCC---------ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccC
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPM---------SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDR   74 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~---------~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~   74 (523)
                      ..+|.|+..|+.+.+.+++...|.         ...+..|..|+||||+||..|+.+++++|++.+.     +++.+|.+
T Consensus        17 ~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-----~~~~~~~~   91 (285)
T 3d9h_A           17 RGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW-----AVNIITAD   91 (285)
T ss_dssp             -------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC-----CSCEECTT
T ss_pred             HHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCcCCC
Confidence            568999999999999997665322         1245678999999999999999999999999763     48999999


Q ss_pred             CChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCC
Q 041922           75 GDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDG  154 (523)
Q Consensus        75 G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~  154 (523)
                      |+||||+|+..|+.+++++|+++|+++                                  +.+|..|.||||.|+.   
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~----------------------------------~~~~~~g~t~L~~A~~---  134 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHGAQV----------------------------------NGVTADWHTPLFNACV---  134 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCS----------------------------------SCCCTTCCCHHHHHHH---
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCC----------------------------------CCCCCCCCCHHHHHHH---
Confidence            999999999999999999999987654                                  6788999999998862   


Q ss_pred             CCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcc---cccCCCChHHHHHHHcChHH
Q 041922          155 DTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKD---QQSGRKATPILIAAKMGVTE  231 (523)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~---~~~~~g~tpLh~Aa~~g~~~  231 (523)
                                                                 .+..++++.|+++.   ..+.+|.||||+|+..|+.+
T Consensus       135 -------------------------------------------~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~  171 (285)
T 3d9h_A          135 -------------------------------------------SGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVE  171 (285)
T ss_dssp             -------------------------------------------HTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHH
T ss_pred             -------------------------------------------cCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence                                                       22356889998872   23456999999999999999


Q ss_pred             HHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCc
Q 041922          232 MVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPG  311 (523)
Q Consensus       232 ~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g  311 (523)
                      ++++|++. +++++.+|.+|+||||+|+.+|+.+++++|+++|+       +++. |..|+||||+|+..++.+++    
T Consensus       172 ~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------~~~~-~~~g~t~L~~A~~~~~~~~v----  238 (285)
T 3d9h_A          172 CVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGA-------DVNQ-GKGQDSPLHAVVRTASEELA----  238 (285)
T ss_dssp             HHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC-------CTTC-CBTTBCHHHHHHHTTCHHHH----
T ss_pred             HHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC-------CCCC-CCCCCCHHHHHHHcCCHHHH----
Confidence            99999997 89999999999999999999999999999999999       8884 99999999999999985543    


Q ss_pred             chhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhh
Q 041922          312 AALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKT  352 (523)
Q Consensus       312 ~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~  352 (523)
                                     +.++..++ ++.+|.+|+||+++|.++
T Consensus       239 ---------------~~Ll~~gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          239 ---------------CLLMDFGADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             ---------------HHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred             ---------------HHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence                           22222233 689999999999999843

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-36  Score=291.48  Aligned_cols=240  Identities=18%  Similarity=0.167  Sum_probs=211.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccc-CCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKL-TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~-~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      ++|+.|+..|+.+.++.+++..  .+++.. +..|.||||+|+..|+.+++++|++.+.     +++.+|.+|.||||+|
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-----DPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----CCcccCCCCCCHHHHH
Confidence            5789999999999999999984  455555 7889999999999999999999999864     4888999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcCCccCCccC----------CCCCCCccccCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRGTYMGLSSN----------DDHGKSSRDSRP  150 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~~~~~l~~~----------d~~g~tpLh~a~  150 (523)
                      +..|+.+++++|+++|++++..+..+.+ ++.++..++.++ ++|+++   +.+++..          +..|.||||.|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~~~~~~~~~~~g~t~L~~A~  156 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR---GANVNLRRKTKEDQERLRKGGATALMDAA  156 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT---TCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh---CCCcccccccHHHHHhhccCCCcHHHHHH
Confidence            9999999999999999999888877777 777777777764 888887   7777766          888999999876


Q ss_pred             CCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc-----ccccCCCChHHHHHH
Q 041922          151 DKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK-----DQQSGRKATPILIAA  225 (523)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa  225 (523)
                      .                                              .+..++++.|+++     +..+..|.||||+|+
T Consensus       157 ~----------------------------------------------~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~  190 (285)
T 1wdy_A          157 E----------------------------------------------KGHVEVLKILLDEMGADVNACDNMGRNALIHAL  190 (285)
T ss_dssp             H----------------------------------------------HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred             H----------------------------------------------cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            2                                              2235688888876     667788999999999


Q ss_pred             HcCh----HHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHh-ccccCCccccccccccCCCCcHhHHHHH
Q 041922          226 KMGV----TEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLD-RKMLGESDLNIFEHVDIKGNSALHLAAK  300 (523)
Q Consensus       226 ~~g~----~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~~~~~in~~d~~G~TpLH~Aa~  300 (523)
                      ..|+    .+++++|++. |++++.+|.+|+||||+|+.+|+.+++++|++ .|+       +++.+|.+|+||||+|++
T Consensus       191 ~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~-------~~~~~~~~g~t~l~~A~~  262 (285)
T 1wdy_A          191 LSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-------EINDTDSDGKTALLLAVE  262 (285)
T ss_dssp             HCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC-------CTTCCCTTSCCHHHHHHH
T ss_pred             HccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC-------CccccCCCCCcHHHHHHH
Confidence            9999    9999999997 89999999999999999999999999999999 787       999999999999999999


Q ss_pred             hCCCCCc
Q 041922          301 FGEYGPW  307 (523)
Q Consensus       301 ~~~~~~~  307 (523)
                      .++.+++
T Consensus       263 ~~~~~i~  269 (285)
T 1wdy_A          263 LKLKKIA  269 (285)
T ss_dssp             TTCHHHH
T ss_pred             cCcHHHH
Confidence            9986543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.8e-35  Score=276.93  Aligned_cols=215  Identities=20%  Similarity=0.224  Sum_probs=179.8

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCC
Q 041922           28 SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADE  107 (523)
Q Consensus        28 ~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  107 (523)
                      .+.+..|.+|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+++|+++      
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------   70 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-----NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV------   70 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC------
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCC-----CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC------
Confidence            3566788899999999999999999999998764     48888999999999999999999999999887544      


Q ss_pred             CCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhc
Q 041922          108 GLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHN  187 (523)
Q Consensus       108 ~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (523)
                                                  +.+|..|.||||.|+.                                    
T Consensus        71 ----------------------------~~~~~~g~t~L~~A~~------------------------------------   86 (237)
T 3b7b_A           71 ----------------------------DPKDAEGSTCLHLAAK------------------------------------   86 (237)
T ss_dssp             ----------------------------CCCCTTSCCHHHHHHH------------------------------------
T ss_pred             ----------------------------CCCCCCCCcHHHHHHH------------------------------------
Confidence                                        5677889999997762                                    


Q ss_pred             cCCCcchhhhhHHHHHHHHHHhc-----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcC
Q 041922          188 KDGNARDETATAAVQELKFMKKK-----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENR  262 (523)
Q Consensus       188 ~~~~~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~  262 (523)
                                .+..+++++|+++     +..+..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.+|
T Consensus        87 ----------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           87 ----------KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             ----------TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHC
T ss_pred             ----------cCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCC
Confidence                      1224588888876     44667899999999999999999999996 8999999999999999999999


Q ss_pred             chhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCC
Q 041922          263 QTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNK  341 (523)
Q Consensus       263 ~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~  341 (523)
                      +.+++++|+++|+       +++.+|..|+||||+|+..++.++                   ++.++..+. ++.+|++
T Consensus       156 ~~~~~~~Ll~~g~-------~~~~~~~~g~t~L~~A~~~~~~~~-------------------v~~Ll~~gad~~~~d~~  209 (237)
T 3b7b_A          156 CVDIAEILLAAKC-------DLHAVNIHGDSPLHIAARENRYDC-------------------VVLFLSRDSDVTLKNKE  209 (237)
T ss_dssp             CHHHHHHHHTTTC-------CTTCCCTTCCCHHHHHHHTTCHHH-------------------HHHHHTTTCCTTCCCTT
T ss_pred             CHHHHHHHHHcCC-------CCCCcCCCCCCHHHHHHHhCCHhH-------------------HHHHHHcCCCCCccCCC
Confidence            9999999999998       999999999999999999988543                   233333343 5888999


Q ss_pred             CCChhHHhhhhhh
Q 041922          342 GKTPKEIFTKTHK  354 (523)
Q Consensus       342 G~Tpl~la~~~~~  354 (523)
                      |+||+++|....+
T Consensus       210 g~t~l~~A~~~~~  222 (237)
T 3b7b_A          210 GETPLQCASLNSQ  222 (237)
T ss_dssp             SCCHHHHSCTTCH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999987654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.6e-36  Score=287.87  Aligned_cols=254  Identities=15%  Similarity=0.069  Sum_probs=167.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMS-REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~-~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      .+||.|+..|+.+.++.+++..... .++.+|..|.||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|
T Consensus        11 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~g~tpL~~A   85 (282)
T 1oy3_D           11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA-----GVLVAERGGHTALHLA   85 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CSSCCCTTSCCHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHH
Confidence            5788899999999998888873332 267788889999999999999999999998764     4788888899999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      ++.|+.+++++|++++++.........   +                  ..........+.++++.+......       
T Consensus        86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~---~------------------~~~~~~~~~~~~~~~~~~~~~~~~-------  137 (282)
T 1oy3_D           86 CRVRAHTCACVLLQPRPSHPRDASDTY---L------------------TQSQDCTPDTSHAPAAVDSQPNPE-------  137 (282)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC---------------------------------------------------------
T ss_pred             HHcCCcchhHhhhccCCCCchhhHHHH---h------------------hcccccCcchhcchhhhccccccc-------
Confidence            999999999999988876432111100   0                  001122233455555544321000       


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHh----cccccCCCChHHHHHHHcChHHHHHHHHh
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKK----KDQQSGRKATPILIAAKMGVTEMVEKILD  238 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~----~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~  238 (523)
                                                            ......+..    -+..+..|.||||+|+..|+.+++++|++
T Consensus       138 --------------------------------------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  179 (282)
T 1oy3_D          138 --------------------------------------NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD  179 (282)
T ss_dssp             --------------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------------------------------hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence                                                  001111111    15677889999999999999999999999


Q ss_pred             hCCCcccccccC-CCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhH
Q 041922          239 TIPVAIHDLDSE-KKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQ  317 (523)
Q Consensus       239 ~~~~~~~~~d~~-G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~  317 (523)
                      . |++++..+.. |+||||+|+.+|+.+++++|+++|+       ++|.+|.+|+||||+|+..++.+++          
T Consensus       180 ~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-------d~~~~d~~g~tpL~~A~~~~~~~~v----------  241 (282)
T 1oy3_D          180 A-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-------DPTARMYGGRTPLGSALLRPNPILA----------  241 (282)
T ss_dssp             H-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSCCHHHHHHTSSCHHHH----------
T ss_pred             c-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-------CCcccccCCCCHHHHHHHcCCcHHH----------
Confidence            7 8999999854 9999999999999999999999999       9999999999999999999985543          


Q ss_pred             HHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhhh
Q 041922          318 WEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHKE  355 (523)
Q Consensus       318 ~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~~  355 (523)
                               +.++..++ ++.+|.+|+||++++......
T Consensus       242 ---------~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          242 ---------RLLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             ---------HHHHHTTCCCCCCC----------------
T ss_pred             ---------HHHHHcCCCcCcCCCcccccccccCCcccc
Confidence                     23333344 689999999999999876543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.2e-36  Score=285.16  Aligned_cols=214  Identities=19%  Similarity=0.274  Sum_probs=128.9

Q ss_pred             cccccCCCCCcHHHHHHHcC-------------CHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHH
Q 041922           29 REAKLTRSGDTALHIAAAAG-------------QTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMA   95 (523)
Q Consensus        29 ~~~~~~~~g~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll   95 (523)
                      ++|.+|.+|.||||+|+..|             +.++++.|++.+.+    ..+..|..|+||||+|+..|+.+++++|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   77 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS----LHNQTDRTGETALHLAARYSRSDAAKRLL   77 (253)
T ss_dssp             ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCC----cccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            45667788888888888866             77888888877642    23455778888888888888888888888


Q ss_pred             hcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhh
Q 041922           96 SKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSR  175 (523)
Q Consensus        96 ~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~  175 (523)
                      ++|+++                                  +.+|..|+||||.|+.                        
T Consensus        78 ~~g~~~----------------------------------~~~~~~g~t~L~~A~~------------------------   99 (253)
T 1yyh_A           78 EASADA----------------------------------NIQDNMGRTPLHAAVS------------------------   99 (253)
T ss_dssp             HTTCCT----------------------------------TCCCTTSCCHHHHHHH------------------------
T ss_pred             HcCCCC----------------------------------CCCCCCCCCHHHHHHH------------------------
Confidence            776544                                  5567777888886651                        


Q ss_pred             hHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc-----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccC
Q 041922          176 NICLESAVAVHNKDGNARDETATAAVQELKFMKKK-----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSE  250 (523)
Q Consensus       176 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~  250 (523)
                                            .+..++++.|+++     +..+..|.||||+|+..|+.+++++|++. +++++.+|.+
T Consensus       100 ----------------------~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~  156 (253)
T 1yyh_A          100 ----------------------ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDL  156 (253)
T ss_dssp             ----------------------HTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTT
T ss_pred             ----------------------cCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCC
Confidence                                  1224477777765     34556788888888888888888888885 7788888888


Q ss_pred             CCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhC
Q 041922          251 KKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESM  330 (523)
Q Consensus       251 G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~  330 (523)
                      |+||||+|+.+|+.+++++|+++|+       +++.+|.+|+||||+|+..|+.+++                   +.++
T Consensus       157 g~t~L~~A~~~~~~~~v~~Ll~~ga-------~~~~~~~~g~tpL~~A~~~~~~~~v-------------------~~Ll  210 (253)
T 1yyh_A          157 GKSALHWAAAVNNVDAAVVLLKNGA-------NKDMQNNREETPLFLAAREGSYETA-------------------KVLL  210 (253)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHTTC-------CTTCCCTTSCCHHHHHHHHTCHHHH-------------------HHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC-------CCCCcCCCCCCHHHHHHHCCCHHHH-------------------HHHH
Confidence            8888888888888888888888887       7788888888888888888775432                   2222


Q ss_pred             Cccc-ccccCCCCCChhHHhhhhh
Q 041922          331 PRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       331 ~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                      ..++ .+.+|..|+||+++|.++.
T Consensus       211 ~~ga~~~~~d~~g~tpl~~A~~~g  234 (253)
T 1yyh_A          211 DHFANRDITDHMDRLPRDIAQERM  234 (253)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HcCCCccccccCCCCHHHHHHHcC
Confidence            2222 4677888888888887654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.1e-34  Score=271.84  Aligned_cols=210  Identities=21%  Similarity=0.226  Sum_probs=153.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH
Q 041922            2 EVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL   81 (523)
Q Consensus         2 ~~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~   81 (523)
                      ...+|+.|+..|+.+.++.++...+. ..+..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|+||||+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~   79 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGV-----PVNDKDDAGWSPLHI   79 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CSCCCCTTSCCHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC-----CCCCcCCCCCCHHHH
Confidence            45689999999999999999998643 356788999999999999999999999998763     488899999999999


Q ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCC
Q 041922           82 AAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPE  161 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~  161 (523)
                      |+..|+.+++++|+++|+++                                  +.+                       
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~----------------------------------~~~-----------------------  102 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHV----------------------------------NAV-----------------------  102 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT----------------------------------TCC-----------------------
T ss_pred             HHHcCHHHHHHHHHHcCCCC----------------------------------CCC-----------------------
Confidence            99999999999999988755                                  222                       


Q ss_pred             CCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCC
Q 041922          162 TPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIP  241 (523)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~  241 (523)
                                                                          +..|.||||+|+..|+.+++++|++. +
T Consensus       103 ----------------------------------------------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g  129 (231)
T 3aji_A          103 ----------------------------------------------------NQNGCTPLHYAASKNRHEIAVMLLEG-G  129 (231)
T ss_dssp             ----------------------------------------------------CTTSCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred             ----------------------------------------------------CCCCCCHHHHHHHcCCHHHHHHHHHc-C
Confidence                                                                33466666666666677777766665 6


Q ss_pred             CcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhH
Q 041922          242 VAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIK  321 (523)
Q Consensus       242 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~  321 (523)
                      ++++.+|..|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+||||+|+..++.+++              
T Consensus       130 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------~~~~~~~~g~t~L~~A~~~~~~~~v--------------  188 (231)
T 3aji_A          130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA-------STNIQDTEGNTPLHLACDEERVEEA--------------  188 (231)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-------CSCCCCTTSCCHHHHHHHTTCHHHH--------------
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC-------CccccCCCCCCHHHHHHHCCCHHHH--------------
Confidence            6666666667777777777677777777776666       6666666677777777666664322              


Q ss_pred             HHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          322 WYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       322 ~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                           +.++..++ ++.+|.+|+||+++|.+..
T Consensus       189 -----~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  216 (231)
T 3aji_A          189 -----KFLVTQGASIYIENKEEKTPLQVAKGGL  216 (231)
T ss_dssp             -----HHHHHTTCCSCCCCTTSCCHHHHSCHHH
T ss_pred             -----HHHHHCCCCCCCCCCCCCCHHHHHHhhH
Confidence                 11111222 3566666777777665543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.3e-35  Score=294.65  Aligned_cols=245  Identities=18%  Similarity=0.132  Sum_probs=191.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCC-CCCcHHHHHHHcCCHHHHHHHHHHhccc-------------------
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTR-SGDTALHIAAAAGQTNIVSELVEIMGEN-------------------   63 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~-~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~-------------------   63 (523)
                      .+|+.|+..|+.+.|+.||+.  +.++|.++. .|+||||+||..|+.++|++|++.|++-                   
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  104 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS  104 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             hHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence            469999999999999999998  677777765 5999999999999999999999987531                   


Q ss_pred             ---------ccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCC----------CCc-eeEeccCCccc-c
Q 041922           64 ---------ASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADE----------GLA-NCSWSSGNLED-K  122 (523)
Q Consensus        64 ---------~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~----------~~~-l~l~~~~~~~~-v  122 (523)
                               ...+++.+|..|.||||+|+..|+.+++++|+++|++++.....          +.+ +++++..++.+ +
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v  184 (337)
T 4g8k_A          105 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  184 (337)
T ss_dssp             HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred             chhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHH
Confidence                     12346777788888888888888888888888887776543221          222 44455555554 3


Q ss_pred             hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhh-hHHH
Q 041922          123 EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETA-TAAV  201 (523)
Q Consensus       123 ~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~  201 (523)
                      ++|+++  .+++++.+|..|.||+|.++.                                           ..+ ....
T Consensus       185 ~~LL~~--~gad~n~~d~~g~t~l~~~~~-------------------------------------------~~~~~~~~  219 (337)
T 4g8k_A          185 KILLDE--MGADVNACDNMGRNALIHALL-------------------------------------------SSDDSDVE  219 (337)
T ss_dssp             HHHHHH--SCCCTTCCCTTSCCHHHHHHH-------------------------------------------HSCTTTHH
T ss_pred             HHHHhc--cCCCcCccCCCCCcHHHHHHH-------------------------------------------HcCcccHH
Confidence            666643  367777777777777774320                                           011 1123


Q ss_pred             HHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccC
Q 041922          202 QELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLG  277 (523)
Q Consensus       202 ~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~  277 (523)
                      +++++|+++    +.+|.+|.||||+|+..|+.++++.|++..+++++.+|.+|+||||+|+++|+.++|++|+++|+  
T Consensus       220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA--  297 (337)
T 4g8k_A          220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA--  297 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC--
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--
Confidence            477888877    67788999999999999999999999998789999999999999999999999999999999999  


Q ss_pred             CccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          278 ESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       278 ~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                           ++|.+     ||||+|++.|+.+++
T Consensus       298 -----d~n~~-----~~L~~A~~~~~~~iv  317 (337)
T 4g8k_A          298 -----STDCG-----DLVMTARRNYDHSLV  317 (337)
T ss_dssp             -----SSTTC-----CHHHHHHHTTCHHHH
T ss_pred             -----CCCCC-----CHHHHHHHcCCHHHH
Confidence                 77654     599999999996654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4e-36  Score=288.12  Aligned_cols=208  Identities=13%  Similarity=0.133  Sum_probs=157.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCC------ccccccCCCCCcHHHHHHHcCCHH-HHHHHHHHhcccccccccccccCC
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPM------SREAKLTRSGDTALHIAAAAGQTN-IVSELVEIMGENASNVLKIQNDRG   75 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~------~~~~~~~~~g~T~Lh~Aa~~g~~~-~v~~Ll~~~~~~~~~~~~~~d~~G   75 (523)
                      .++|+.||..|+.+.|+.||+....      ...+..+..|.||||.|+..++.+ +++.|++.|     .++|.+|.+|
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G-----advn~~d~~G   86 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG-----LGVNVTSQDG   86 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC-----CCTTCCCTTS
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC-----CCCCCcCCCC
Confidence            3689999999999999999986432      124567888999999999988765 788998876     4599999999


Q ss_pred             ChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCC
Q 041922           76 DTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGD  155 (523)
Q Consensus        76 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~  155 (523)
                      +||||+|+..|+.+++++|++.|+++                                  +.++.+|.||+|.|+.    
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~----------------------------------~~~~~~g~t~l~~a~~----  128 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANA----------------------------------GARNADQAVPLHLACQ----  128 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCT----------------------------------TCCCTTCCCHHHHHHH----
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCc----------------------------------CccCCCCCCccccccc----
Confidence            99999999999999999999987654                                  6778899999997751    


Q ss_pred             CccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHH
Q 041922          156 TFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTE  231 (523)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~  231 (523)
                                                                ....++++.|++.    +.+|..|.||||+|+..|+.+
T Consensus       129 ------------------------------------------~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~  166 (269)
T 4b93_B          129 ------------------------------------------QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE  166 (269)
T ss_dssp             ------------------------------------------HTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred             ------------------------------------------cChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence                                                      2234588888887    677889999999999999999


Q ss_pred             HHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCC
Q 041922          232 MVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGE  303 (523)
Q Consensus       232 ~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  303 (523)
                      ++++|++. |++++.+|..|+||||+|+.+|+.++|++|+++|+       ++|.+|++|+||||+|+++++
T Consensus       167 ~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga-------d~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          167 LVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLHGA-------SVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             GHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-------CSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC-------CCCCcCCCCCCHHHHHHhCCc
Confidence            99999997 89999999999999999999999999999999999       999999999999999987765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.7e-35  Score=281.52  Aligned_cols=211  Identities=16%  Similarity=0.121  Sum_probs=166.0

Q ss_pred             hHHHHHHHcC-------------CHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccc
Q 041922            4 NCLSKFAMRG-------------QWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI   70 (523)
Q Consensus         4 ~~L~~Aa~~g-------------~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~   70 (523)
                      .+||.|+..|             +.+.++.+++..+.. .+..|..|.||||+|+..|+.+++++|++.+.     +++.
T Consensus        12 tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~   85 (253)
T 1yyh_A           12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEASA-----DANI   85 (253)
T ss_dssp             -----------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTC
T ss_pred             cHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----CCCC
Confidence            5788999877             889999999884332 23458999999999999999999999999864     5899


Q ss_pred             cccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCC
Q 041922           71 QNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRP  150 (523)
Q Consensus        71 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~  150 (523)
                      +|..|+||||+|+..|+.+++++|++.++                                 .+++.+|..|.||||.|+
T Consensus        86 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~---------------------------------~~~~~~~~~g~t~L~~A~  132 (253)
T 1yyh_A           86 QDNMGRTPLHAAVSADAQGVFQILIRNRA---------------------------------TDLDARMHDGTTPLILAA  132 (253)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHSTT---------------------------------SCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCC---------------------------------CCccccCCCCCcHHHHHH
Confidence            99999999999999999999999999874                                 244678889999999886


Q ss_pred             CCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHH
Q 041922          151 DKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAK  226 (523)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~  226 (523)
                      .                                           .+   ..++++.|+++    +.+|..|.||||+|+.
T Consensus       133 ~-------------------------------------------~~---~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~  166 (253)
T 1yyh_A          133 R-------------------------------------------LA---VEGMLEDLINSHADVNAVDDLGKSALHWAAA  166 (253)
T ss_dssp             H-------------------------------------------HT---CSSHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             H-------------------------------------------cC---hHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            2                                           11   13488888887    6778899999999999


Q ss_pred             cChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          227 MGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       227 ~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      .|+.+++++|++. |++++.+|.+|+||||+|+.+|+.+++++|+++|+       +++.+|..|+||||+|++.|+.++
T Consensus       167 ~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-------~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          167 VNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFA-------NRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-------CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC-------CccccccCCCCHHHHHHHcCCHHH
Confidence            9999999999997 89999999999999999999999999999999999       999999999999999999999765


Q ss_pred             c
Q 041922          307 W  307 (523)
Q Consensus       307 ~  307 (523)
                      +
T Consensus       239 ~  239 (253)
T 1yyh_A          239 V  239 (253)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7.5e-35  Score=284.02  Aligned_cols=225  Identities=17%  Similarity=0.194  Sum_probs=185.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      +.+|+.|+..|+.+.++.+++.  +.+++..|..|.||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGA-----NINQPDNEGWIPLHAA  113 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCcHHHHH
Confidence            4679999999999999999998  66788899999999999999999999999999864     5899999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.+++++|+++|+++                                  +..|..|.||||.|+.           
T Consensus       114 ~~~g~~~~v~~Ll~~g~~~----------------------------------~~~~~~g~t~l~~A~~-----------  148 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAHV----------------------------------GAVNSEGDTPLDIAEE-----------  148 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCCT----------------------------------TCCCTTSCCHHHHCCS-----------
T ss_pred             HHcCCHHHHHHHHhCCCCC----------------------------------CCcCCCCCCHHHHHHh-----------
Confidence            9999999999999987654                                  6678899999998872           


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcch----hhhhHHHHHHHHHHhc-----ccccCCCChHHHHHHHcChHHHH
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARD----ETATAAVQELKFMKKK-----DQQSGRKATPILIAAKMGVTEMV  233 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g~~~~v  233 (523)
                                   .....++..++...+....    .......+.+..++..     ...+..|.||||+|+..|+.+++
T Consensus       149 -------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  215 (299)
T 1s70_B          149 -------------EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL  215 (299)
T ss_dssp             -------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHH
T ss_pred             -------------cchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHH
Confidence                         2333344433333222211    1111122234444443     33456899999999999999999


Q ss_pred             HHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHH
Q 041922          234 EKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAK  300 (523)
Q Consensus       234 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~  300 (523)
                      ++|++. |++++.+|.+|+||||+|+.+|+.+++++|+++|+       +++.+|..|+||||+|+.
T Consensus       216 ~~Ll~~-g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-------d~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          216 KLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC-------DMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             HHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSCCTTTSCCS
T ss_pred             HHHHHc-CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC-------CCCCcCCCCCCHHHHHHH
Confidence            999997 89999999999999999999999999999999999       999999999999999965

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2e-35  Score=278.57  Aligned_cols=215  Identities=13%  Similarity=0.101  Sum_probs=184.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH
Q 041922            4 NCLSKFAMRGQWDNFVQAYEN--NPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL   81 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~--~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~   81 (523)
                      .+||.|+..|+.+.++.+++.  ..+.+++..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+
T Consensus        11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~l~~   85 (241)
T 1k1a_A           11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-----SPMALDRHGQTAAHL   85 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC-----CccccCCCCCCHHHH
Confidence            578889999999988888862  1256677888889999999999999999999998763     477888889999999


Q ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCC
Q 041922           82 AAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPE  161 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~  161 (523)
                      |+..|+.+++++|++.++..                              ..+++..|..|.||||.|+.          
T Consensus        86 A~~~~~~~~~~~Ll~~~~~~------------------------------~~~~~~~~~~g~t~L~~A~~----------  125 (241)
T 1k1a_A           86 ACEHRSPTCLRALLDSAAPG------------------------------TLDLEARNYDGLTALHVAVN----------  125 (241)
T ss_dssp             HHHTTCHHHHHHHHHHSCTT------------------------------SCCTTCCCTTSCCHHHHHHH----------
T ss_pred             HHHcCCHHHHHHHHHcCCCc------------------------------cccccccCcCCCcHHHHHHH----------
Confidence            99999999999999887632                              44678889999999998762          


Q ss_pred             CCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----cccc-CCCChHHHHHHHcChHHHHHHH
Q 041922          162 TPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQS-GRKATPILIAAKMGVTEMVEKI  236 (523)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~-~~g~tpLh~Aa~~g~~~~v~~L  236 (523)
                                                          .+..++++.|+++    +..+ ..|.||||+|+..|+.+++++|
T Consensus       126 ------------------------------------~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  169 (241)
T 1k1a_A          126 ------------------------------------TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL  169 (241)
T ss_dssp             ------------------------------------HTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ------------------------------------cCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHH
Confidence                                                2235688888887    4445 6799999999999999999999


Q ss_pred             HhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          237 LDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       237 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      ++. |++++.+|.+|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+||||+|+..++.+++
T Consensus       170 l~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          170 LQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-------DSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             HHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-------CTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC-------CCCCcCCCCCCHHHHHHhcCcHHHH
Confidence            997 89999999999999999999999999999999999       9999999999999999998886544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.9e-35  Score=274.86  Aligned_cols=215  Identities=22%  Similarity=0.250  Sum_probs=181.0

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc
Q 041922           31 AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA  110 (523)
Q Consensus        31 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  110 (523)
                      +.+|.+|+||||+||..|+.+++++|++.... .+.+++.+|..|.||||+|+..|+.+++++|++.|+++         
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------   72 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---------   72 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---------
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc---------
Confidence            56799999999999999999999999985432 22568999999999999999999999999999987654         


Q ss_pred             eeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCC
Q 041922          111 NCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDG  190 (523)
Q Consensus       111 l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (523)
                                               +.+|..|.||||.|+.                                       
T Consensus        73 -------------------------~~~~~~g~t~l~~A~~---------------------------------------   88 (241)
T 1k1a_A           73 -------------------------MALDRHGQTAAHLACE---------------------------------------   88 (241)
T ss_dssp             -------------------------TCCCTTSCCHHHHHHH---------------------------------------
T ss_pred             -------------------------cccCCCCCCHHHHHHH---------------------------------------
Confidence                                     6678899999998862                                       


Q ss_pred             CcchhhhhHHHHHHHHHHhc--------ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccc-cCCCcHHHHHHHc
Q 041922          191 NARDETATAAVQELKFMKKK--------DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLD-SEKKNLVLLAVEN  261 (523)
Q Consensus       191 ~~~~~~~~~~~~~v~~Ll~~--------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~  261 (523)
                             .+..++++.|++.        +..+..|.||||+|+..|+.+++++|++. +.+++..| ..|+||||+|+.+
T Consensus        89 -------~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           89 -------HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             -------TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHT
T ss_pred             -------cCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHc
Confidence                   1224577778766        34567899999999999999999999997 89999999 8999999999999


Q ss_pred             CchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCC
Q 041922          262 RQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNN  340 (523)
Q Consensus       262 ~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~  340 (523)
                      |+.+++++|+++|+       ++|.+|.+|+||||+|+..++.+++                   +.++..++ ++.+|.
T Consensus       161 ~~~~~v~~Ll~~g~-------~~~~~~~~g~t~L~~A~~~~~~~~v-------------------~~Ll~~ga~~~~~~~  214 (241)
T 1k1a_A          161 NSLSMVQLLLQHGA-------NVNAQMYSGSSALHSASGRGLLPLV-------------------RTLVRSGADSSLKNC  214 (241)
T ss_dssp             TCHHHHHHHHHTTC-------CTTCBCTTSCBHHHHHHHHTCHHHH-------------------HHHHHTTCCTTCCCT
T ss_pred             CCHHHHHHHHHcCC-------CCCCcCCCCCCHHHHHHHcCCHHHH-------------------HHHHhcCCCCCCcCC
Confidence            99999999999999       9999999999999999999986543                   22222333 588999


Q ss_pred             CCCChhHHhhhhh
Q 041922          341 KGKTPKEIFTKTH  353 (523)
Q Consensus       341 ~G~Tpl~la~~~~  353 (523)
                      +|+||+++|.+..
T Consensus       215 ~g~tpl~~A~~~~  227 (241)
T 1k1a_A          215 HNDTPLMVARSRR  227 (241)
T ss_dssp             TSCCTTTTCSSHH
T ss_pred             CCCCHHHHHHhcC
Confidence            9999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.5e-35  Score=272.26  Aligned_cols=213  Identities=18%  Similarity=0.184  Sum_probs=185.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccc-cccCCChHH
Q 041922            1 MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI-QNDRGDTAL   79 (523)
Q Consensus         1 ~~~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-~d~~G~TpL   79 (523)
                      |...+||.|+..|+.+.++.+++..+.. .+..|..|.||||+|+..|+.+++++|++.+++   .+++. +|..|.|||
T Consensus         1 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~g~t~L   76 (228)
T 2dzn_A            1 MSNYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN---VNLDDYPDDSGWTPF   76 (228)
T ss_dssp             --CCHHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT---CCGGGCCCTTSCCHH
T ss_pred             CCccHHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc---ccccccCCCCCCCHH
Confidence            5668999999999999999999986432 345799999999999999999999999998642   33555 889999999


Q ss_pred             hHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccC
Q 041922           80 HLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSV  159 (523)
Q Consensus        80 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~  159 (523)
                      |+|+..|+.+++++|+++|.                                ..+++.+|..|.||||.|+.        
T Consensus        77 ~~A~~~~~~~~~~~Ll~~g~--------------------------------~~~~~~~~~~g~t~L~~A~~--------  116 (228)
T 2dzn_A           77 HIACSVGNLEVVKSLYDRPL--------------------------------KPDLNKITNQGVTCLHLAVG--------  116 (228)
T ss_dssp             HHHHHHCCHHHHHHHHSSSS--------------------------------CCCTTCCCTTCCCHHHHHHH--------
T ss_pred             HHHHHcCCHHHHHHHHhCCC--------------------------------CcccccCCcCCCCHHHHHHH--------
Confidence            99999999999999999873                                24557888999999998762        


Q ss_pred             CCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHH
Q 041922          160 PETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEK  235 (523)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~  235 (523)
                                                            .+..++++.|+++    +.++..|.||||+|+..|+.+++++
T Consensus       117 --------------------------------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A          117 --------------------------------------KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             --------------------------------------TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             --------------------------------------cCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                                                  1225688899887    6678899999999999999999999


Q ss_pred             HHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHH-hccccCCccccccccccCCCCcHhHHHHHhC
Q 041922          236 ILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL-DRKMLGESDLNIFEHVDIKGNSALHLAAKFG  302 (523)
Q Consensus       236 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~  302 (523)
                      |++..+++++.+|.+|+||||+|+.+|+.+++++|+ +.|+       +++.+|.+|+||||+|+..+
T Consensus       159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga-------~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA-------EYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC-------CSCCBCTTSCBGGGGCSSTT
T ss_pred             HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCccCCCCCcHHHHHHHHH
Confidence            999844999999999999999999999999999999 8899       99999999999999997653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.8e-35  Score=273.57  Aligned_cols=207  Identities=19%  Similarity=0.210  Sum_probs=188.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      ++||.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+
T Consensus        13 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~   85 (237)
T 3b7b_A           13 SPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA-----LVDPKDAEGSTCLHLAA   85 (237)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-----CCCCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-----CCCCCCCCCCcHHHHHH
Confidence            689999999999999999998  67778889999999999999999999999998763     58899999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+++++|++.++                                 .+++..|..|.||||.|+.            
T Consensus        86 ~~~~~~~~~~Ll~~~~---------------------------------~~~~~~~~~g~t~L~~A~~------------  120 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQ---------------------------------MDVNCQDDGGWTPMIWATE------------  120 (237)
T ss_dssp             HTTCHHHHHHHHTTTC---------------------------------CCTTCCCTTSCCHHHHHHH------------
T ss_pred             HcCCHHHHHHHHhCCC---------------------------------CCcccCCCCCCCHHHHHHH------------
Confidence            9999999999999872                                 3456788899999998762            


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhh
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDT  239 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~  239 (523)
                                                        .+..++++.|+++    +.++..|.||||+|+..|+.+++++|++.
T Consensus       121 ----------------------------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  166 (237)
T 3b7b_A          121 ----------------------------------YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA  166 (237)
T ss_dssp             ----------------------------------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT
T ss_pred             ----------------------------------cCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence                                              1225688888887    56778899999999999999999999997


Q ss_pred             CCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCC
Q 041922          240 IPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEY  304 (523)
Q Consensus       240 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  304 (523)
                       +++++.+|..|+||||+|+.+++.+++++|+++|+       +++.+|++|+||||+|+..++.
T Consensus       167 -g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------d~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          167 -KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS-------DVTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             -TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-------CTTCCCTTSCCHHHHSCTTCHH
T ss_pred             -CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC-------CCCccCCCCCCHHHHHHHHHHH
Confidence             89999999999999999999999999999999999       9999999999999999998874

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2e-36  Score=304.82  Aligned_cols=249  Identities=14%  Similarity=0.082  Sum_probs=204.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccC-CCCCcHHHHHHHcCCHHHHHHHHHHhcc---cccccccccccCCChHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGE---NASNVLKIQNDRGDTAL   79 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~~~~~d~~G~TpL   79 (523)
                      .+||.|+..| .+.++.++.    .+++..| ..|+||||+||..|+.+++++|+.....   ....++|.+|.+|.|||
T Consensus        96 t~L~~Aa~~~-~~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL  170 (373)
T 2fo1_E           96 IKLHTEAAGS-YAITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL  170 (373)
T ss_dssp             CHHHHHHHSS-SCCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             cHHHHHhcCC-chHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHH
Confidence            4688888854 455544433    2456677 7899999999999999999888742110   11256999999999999


Q ss_pred             hHHHHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCc
Q 041922           80 HLAAALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTF  157 (523)
Q Consensus        80 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~  157 (523)
                      |+|+..|+.+++++|+++|++++..+..+.+ +++++..++.++ ++|+++...+.+++..|..|.||||.|+.      
T Consensus       171 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~------  244 (373)
T 2fo1_E          171 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH------  244 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH------
T ss_pred             HHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHH------
Confidence            9999999999999999999999888777777 778877777764 88887622237899999999999998762      


Q ss_pred             cCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----c--------cccCCCChHHHHHH
Q 041922          158 SVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----D--------QQSGRKATPILIAA  225 (523)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~--------~~~~~g~tpLh~Aa  225 (523)
                                                           .+.....+++++|+++    +        ..|..|.||||+|+
T Consensus       245 -------------------------------------~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~  287 (373)
T 2fo1_E          245 -------------------------------------NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA  287 (373)
T ss_dssp             -------------------------------------SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHH
T ss_pred             -------------------------------------hCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHH
Confidence                                                 1111245688888877    1        24668999999999


Q ss_pred             HcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCC
Q 041922          226 KMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYG  305 (523)
Q Consensus       226 ~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~  305 (523)
                      ..|+.+++++|++..+++++.+|.+|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+||||+|+..|+.+
T Consensus       288 ~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-------d~~~~d~~g~t~l~~A~~~g~~~  360 (373)
T 2fo1_E          288 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-------SVEAVDATDHTARQLAQANNHHN  360 (373)
T ss_dssp             SSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-------CSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             HhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CccCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999998779999999999999999999999999999999999       99999999999999999999966


Q ss_pred             Cc
Q 041922          306 PW  307 (523)
Q Consensus       306 ~~  307 (523)
                      ++
T Consensus       361 iv  362 (373)
T 2fo1_E          361 IV  362 (373)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.6e-35  Score=281.70  Aligned_cols=238  Identities=19%  Similarity=0.198  Sum_probs=204.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhccccccccccc-ccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc-eeE
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQ-NDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA-NCS  113 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l  113 (523)
                      +|+||||.|++.|+.+++++|++.+.     +++.+ +..|.||||+|+..|+.+++++|+++|++++..+..+.+ +++
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   78 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGA-----NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCC-----CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            58899999999999999999999864     36666 888999999999999999999999999999888777777 777


Q ss_pred             eccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCc
Q 041922          114 WSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNA  192 (523)
Q Consensus       114 ~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (523)
                      ++..++.++ ++|+++   +++++.+|..|.||||.|+.                                         
T Consensus        79 A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~-----------------------------------------  114 (285)
T 1wdy_A           79 AAIAGSVKLLKLFLSK---GADVNECDFYGFTAFMEAAV-----------------------------------------  114 (285)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCTTCBCTTCCBHHHHHHH-----------------------------------------
T ss_pred             HHHcCCHHHHHHHHHc---CCCCCccCcccCCHHHHHHH-----------------------------------------
Confidence            777777764 888887   89999999999999998762                                         


Q ss_pred             chhhhhHHHHHHHHHHhc----ccc----------cCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHH
Q 041922          193 RDETATAAVQELKFMKKK----DQQ----------SGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLA  258 (523)
Q Consensus       193 ~~~~~~~~~~~v~~Ll~~----~~~----------~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A  258 (523)
                           .+..+++++|+++    +..          +..|.||||+|+..|+.+++++|++.+|.+++..|..|+||||+|
T Consensus       115 -----~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  189 (285)
T 1wdy_A          115 -----YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA  189 (285)
T ss_dssp             -----TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred             -----hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence                 1224577888776    222          677999999999999999999999988999999999999999999


Q ss_pred             HHcCc----hhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCC-cc
Q 041922          259 VENRQ----TGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMP-RY  333 (523)
Q Consensus       259 ~~~~~----~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~-~~  333 (523)
                      +..++    .+++++|+++|+       ++|.+|.+|+||||+|+..|+.+++                   +.++. .+
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~-------~~~~~~~~g~t~L~~A~~~~~~~~v-------------------~~Ll~~~g  243 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGA-------DVNVRGERGKTPLILAVEKKHLGLV-------------------QRLLEQEH  243 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTC-------CSSCCCTTSCCHHHHHHHTTCHHHH-------------------HHHHHSSS
T ss_pred             HHccccchHHHHHHHHHHcCC-------CCCCcCCCCCcHHHHHHHcCCHHHH-------------------HHHHhccC
Confidence            99999    899999999999       9999999999999999999985542                   22222 22


Q ss_pred             c-ccccCCCCCChhHHhhhhh
Q 041922          334 F-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       334 ~-~~~~n~~G~Tpl~la~~~~  353 (523)
                      . ++.+|.+|+||+++|.+..
T Consensus       244 ~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          244 IEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccccCCCCCcHHHHHHHcC
Confidence            2 5889999999999999764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6.3e-35  Score=292.98  Aligned_cols=262  Identities=13%  Similarity=0.046  Sum_probs=206.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.||..|+.+.++.|++.  +.+++..|..|.||||+|+..|+.++|++|++.+.       +..+.+|.||||+|+
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-------~~~~~~g~t~L~~A~   92 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE-------VHSLWHGQKPIHLAV   92 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC-------CCCCBTTBCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC-------CccccCCCCHHHHHH
Confidence            579999999999999999998  67788899999999999999999999999999864       334468999999999


Q ss_pred             HcCCHHHHHHHHhc----CcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccC
Q 041922           84 ALGNEAMCHCMASK----DRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSV  159 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~----~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~  159 (523)
                      ..|+.+++++|++.    |.+++..........                 -...+.+.+|..|.||||.|+.        
T Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~t~L~~A~~--------  147 (364)
T 3ljn_A           93 MANKTDLVVALVEGAKERGQMPESLLNECDERE-----------------VNEIGSHVKHCKGQTALHWCVG--------  147 (364)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCC-----------------EEEETTEEEEESCCCHHHHHHH--------
T ss_pred             HcCCHHHHHHHHHhccccCCCHHHHHhhcchHh-----------------hhhhccccCCCCCCCHHHHHHH--------
Confidence            99999999999999    555433211111100                 0123446688999999998862        


Q ss_pred             CCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHH
Q 041922          160 PETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEK  235 (523)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~  235 (523)
                                                         .+ ....+++++|+++    +..|..|.||||+|+..|+.+++++
T Consensus       148 -----------------------------------~g-~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~  191 (364)
T 3ljn_A          148 -----------------------------------LG-PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDL  191 (364)
T ss_dssp             -----------------------------------SC-GGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             -----------------------------------cC-CchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence                                               11 0035699999988    6778899999999999999999999


Q ss_pred             HHhhCCCc-----ccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCC
Q 041922          236 ILDTIPVA-----IHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIP  310 (523)
Q Consensus       236 Ll~~~~~~-----~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~  310 (523)
                      |++. +++     ++..|..|+||||+|+.+|+.+++++|+++|+       ++|.+|.+|+||||+|+..|+.+++...
T Consensus       192 Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-------d~~~~d~~g~tpL~~A~~~g~~~~v~~L  263 (364)
T 3ljn_A          192 MMDT-VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI-------DVNMEDNEHTVPLYLSVRAAMVLLTKEL  263 (364)
T ss_dssp             HHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC-------CTTCCCTTSCCHHHHHHHTCCHHHHHHH
T ss_pred             HHhc-ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-------CCCCCCCCCCCHHHHHHHhChHHHHHHH
Confidence            9998 677     99999999999999999999999999999999       9999999999999999999997654210


Q ss_pred             ---cchhhhHHHhHHHHHHHh-hCCcccccccCCCCCChhHHhhhhh
Q 041922          311 ---GAALQMQWEIKWYKFVKE-SMPRYFFLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       311 ---g~~l~~~~~~~~~~~v~~-~~~~~~~~~~n~~G~Tpl~la~~~~  353 (523)
                         |+...          +.. ..........+..|.||+..|....
T Consensus       264 l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          264 LQKTDVFL----------IQACPYHNGTTVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             HHHSCHHH----------HHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred             HHcCCchh----------hhcCcccCcccccccccccccchhhhhcc
Confidence               11110          000 0011113456788899998877653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2e-34  Score=269.44  Aligned_cols=207  Identities=15%  Similarity=0.136  Sum_probs=177.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEecc
Q 041922           37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSS  116 (523)
Q Consensus        37 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~  116 (523)
                      |+||||+|+..|+.++++.|++.+.    ...+.+|.+|+||||+|+..|+.+++++|++.|++.               
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---------------   62 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKP----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV---------------   62 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCG----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC---------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCc----cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccc---------------
Confidence            7899999999999999999999864    346668999999999999999999999999998533               


Q ss_pred             CCcccchhhhhhcCCccCCcc-CCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchh
Q 041922          117 GNLEDKEHHREKRGTYMGLSS-NDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDE  195 (523)
Q Consensus       117 ~~~~~v~~l~~~~~~~~~l~~-~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (523)
                                       +++. .|..|+||||.|+.                                            
T Consensus        63 -----------------~~~~~~~~~g~t~L~~A~~--------------------------------------------   81 (228)
T 2dzn_A           63 -----------------NLDDYPDDSGWTPFHIACS--------------------------------------------   81 (228)
T ss_dssp             -----------------CGGGCCCTTSCCHHHHHHH--------------------------------------------
T ss_pred             -----------------cccccCCCCCCCHHHHHHH--------------------------------------------
Confidence                             3344 78899999998862                                            


Q ss_pred             hhhHHHHHHHHHHhc------ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHH
Q 041922          196 TATAAVQELKFMKKK------DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKL  269 (523)
Q Consensus       196 ~~~~~~~~v~~Ll~~------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~  269 (523)
                        .+..++++.|+++      +..+..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.+|+.+++++
T Consensus        82 --~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           82 --VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             --HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             --cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence              2235688888876      45677899999999999999999999997 89999999999999999999999999999


Q ss_pred             HHhcc-ccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhC-Cccc-ccccCCCCCChh
Q 041922          270 LLDRK-MLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESM-PRYF-FLGYNNKGKTPK  346 (523)
Q Consensus       270 Ll~~~-~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~-~~~~-~~~~n~~G~Tpl  346 (523)
                      |+++| +       ++|.+|.+|+||||+|+..++.+++                   +.++ ..++ ++.+|.+|+||+
T Consensus       159 Ll~~g~~-------~~~~~d~~g~t~L~~A~~~~~~~~v-------------------~~Ll~~~ga~~~~~~~~g~t~l  212 (228)
T 2dzn_A          159 LCGLGKS-------AVNWQDKQGWTPLFHALAEGHGDAA-------------------VLLVEKYGAEYDLVDNKGAKAE  212 (228)
T ss_dssp             HHTTTCC-------CSCCCCTTSCCHHHHHHHTTCHHHH-------------------HHHHHHHCCCSCCBCTTSCBGG
T ss_pred             HHhcCcc-------cccCcCCCCCCHHHHHHHcCCHHHH-------------------HHHHHhcCCCCCccCCCCCcHH
Confidence            99999 6       9999999999999999999986543                   2222 2222 589999999999


Q ss_pred             HHhhhh
Q 041922          347 EIFTKT  352 (523)
Q Consensus       347 ~la~~~  352 (523)
                      ++|.+.
T Consensus       213 ~~A~~~  218 (228)
T 2dzn_A          213 DVALNE  218 (228)
T ss_dssp             GGCSST
T ss_pred             HHHHHH
Confidence            999764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3e-34  Score=285.83  Aligned_cols=235  Identities=14%  Similarity=0.090  Sum_probs=198.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.|++.  +.+++.+|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+
T Consensus        60 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~-----~~~~~~~~g~t~L~~A~  132 (351)
T 3utm_A           60 TPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA-----CVNAMDLWQFTPLHEAA  132 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHH
Confidence            589999999999999999998  67788899999999999999999999999999864     58999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCccc----------------------chhhhhhcCCccCCccCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLED----------------------KEHHREKRGTYMGLSSNDD  140 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~----------------------v~~l~~~~~~~~~l~~~d~  140 (523)
                      ..|+.+++++|+++|+++...+..+.+ ++++...+...                      +..++..   .......+.
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~  209 (351)
T 3utm_A          133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL---EIINFKQPQ  209 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTT---CCTTCCCTT
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHh---hcccccCCC
Confidence            999999999999999998877766655 33332211111                      1122221   223345678


Q ss_pred             CCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCC
Q 041922          141 HGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGR  216 (523)
Q Consensus       141 ~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~  216 (523)
                      .|.||||.|+                                           ...+....++++.|+++    +.++..
T Consensus       210 ~~~t~L~~A~-------------------------------------------~~~~~~~~~~~~~Ll~~g~~~~~~~~~  246 (351)
T 3utm_A          210 SHETALHCAV-------------------------------------------ASLHPKRKQVAELLLRKGANVNEKNKD  246 (351)
T ss_dssp             TCCCHHHHHH-------------------------------------------HCCSTTHHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCHHHHHH-------------------------------------------HHhCccHHHHHHHHHHcCCCcCCcCCC
Confidence            8999999876                                           22334456788999887    677889


Q ss_pred             CChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhH
Q 041922          217 KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALH  296 (523)
Q Consensus       217 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH  296 (523)
                      |.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+||+|
T Consensus       247 g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------d~~~~~~~g~tal~  318 (351)
T 3utm_A          247 FMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS-------DPSIISLQGFTAAQ  318 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-------CTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC-------CCCCcCCCCCChhh
Confidence            99999999999999999999997 89999999999999999999999999999999999       99999999999999


Q ss_pred             HHH
Q 041922          297 LAA  299 (523)
Q Consensus       297 ~Aa  299 (523)
                      +|.
T Consensus       319 ~a~  321 (351)
T 3utm_A          319 MGN  321 (351)
T ss_dssp             HSC
T ss_pred             hhh
Confidence            984

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.6e-34  Score=286.79  Aligned_cols=240  Identities=19%  Similarity=0.195  Sum_probs=193.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhccccccccccccc-CCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc-e
Q 041922           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQND-RGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA-N  111 (523)
Q Consensus        34 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l  111 (523)
                      +.+|+||||.|++.|+.++|++||+.|+     ++|.+|. .|+||||+|++.|+.++|++|+++|++++..+..+.+ +
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Ga-----dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~   96 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGA-----NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF   96 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCC-----CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchh
Confidence            4458899999999999999999999874     4888875 5999999999999999999999999999887776666 4


Q ss_pred             eEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCC
Q 041922          112 CSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDG  190 (523)
Q Consensus       112 ~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (523)
                      +.+........ ..++..   +.+++.+|..|.||||.|+.                                       
T Consensus        97 ~~~~~~~~~~~~~~~~~~---~~~~~~~d~~g~t~l~~A~~---------------------------------------  134 (337)
T 4g8k_A           97 ILAAIAGSVKLLKLFLSK---GADVNECDFYGFTAFMEAAV---------------------------------------  134 (337)
T ss_dssp             HHHHHHTCHHHHHHHHTT---TCCTTCBCTTCCBHHHHHHH---------------------------------------
T ss_pred             HHHHhcccchhhHHhhhc---cchhhhhccCCCCHHHHHHH---------------------------------------
Confidence            44444444433 555554   88999999999999998762                                       


Q ss_pred             CcchhhhhHHHHHHHHHHhc--------------ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHH
Q 041922          191 NARDETATAAVQELKFMKKK--------------DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVL  256 (523)
Q Consensus       191 ~~~~~~~~~~~~~v~~Ll~~--------------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh  256 (523)
                             .+..++++.|+++              ...+..|.||||+|+..|+.+++++||++.|++++.+|..|+|++|
T Consensus       135 -------~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~  207 (337)
T 4g8k_A          135 -------YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI  207 (337)
T ss_dssp             -------TTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             -------cCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHH
Confidence                   1123466666655              2345679999999999999999999998879999999999999999


Q ss_pred             HHHHcCc----hhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCC-
Q 041922          257 LAVENRQ----TGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMP-  331 (523)
Q Consensus       257 ~A~~~~~----~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~-  331 (523)
                      .++..++    .+++++|+++|+       ++|.+|.+|+||||+|+..|+.+++                   +.++. 
T Consensus       208 ~~~~~~~~~~~~~i~~lLl~~ga-------d~n~~d~~g~t~L~~a~~~~~~~~v-------------------~~Ll~~  261 (337)
T 4g8k_A          208 HALLSSDDSDVEAITHLLLDHGA-------DVNVRGERGKTPLILAVEKKHLGLV-------------------QRLLEQ  261 (337)
T ss_dssp             HHHHHSCTTTHHHHHHHHHHTTC-------CTTCCCGGGCCHHHHHHHTTCHHHH-------------------HHHHTS
T ss_pred             HHHHHcCcccHHHHHHHHHHCCC-------CCCCcCCCCCCHHHHHHHhhhhHHH-------------------HHHHHh
Confidence            8887654    358899999999       9999999999999999999985432                   22222 


Q ss_pred             ccc-ccccCCCCCChhHHhhhhh
Q 041922          332 RYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       332 ~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                      .+. ++.+|.+|+|||++|.+..
T Consensus       262 ~~~~vn~~d~~G~TpL~~A~~~g  284 (337)
T 4g8k_A          262 EHIEINDTDSDGKTALLLAVELK  284 (337)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             cCCcccCcCCCCCCHHHHHHHcC
Confidence            122 6899999999999998753

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1e-34  Score=283.03  Aligned_cols=240  Identities=17%  Similarity=0.194  Sum_probs=199.4

Q ss_pred             HHHHcCCHHHHHHHHHcCCCccc-------cccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHh
Q 041922            8 KFAMRGQWDNFVQAYENNPMSRE-------AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALH   80 (523)
Q Consensus         8 ~Aa~~g~~~~v~~ll~~~~~~~~-------~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh   80 (523)
                      .++..|..+.++.++...+....       ...+..|.||||.||..|+.++|++|++.+.     +++.+|.+|.||||
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~   78 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA-----DINYANVDGLTALH   78 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC-----CTTCBCTTCCBHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCC-----CCcccCCCCCCHHH
Confidence            47888899999999987544221       1234467899999999999999999999864     48999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCC
Q 041922           81 LAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVP  160 (523)
Q Consensus        81 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l  160 (523)
                      +|+..|+.+++++|+++|+++                                  +.+|..|+||||+|+.         
T Consensus        79 ~A~~~g~~~~v~~Ll~~ga~~----------------------------------~~~~~~g~tpL~~A~~---------  115 (299)
T 1s70_B           79 QACIDDNVDMVKFLVENGANI----------------------------------NQPDNEGWIPLHAAAS---------  115 (299)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT----------------------------------TCCCTTSCCHHHHHHH---------
T ss_pred             HHHHcCCHHHHHHHHHCCCCC----------------------------------CCCCCCCCcHHHHHHH---------
Confidence            999999999999999987654                                  6778899999998862         


Q ss_pred             CCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHH
Q 041922          161 ETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKI  236 (523)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~L  236 (523)
                                                           .+..+++++|+++    +..+..|.||||+|+..|+.++++.+
T Consensus       116 -------------------------------------~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  158 (299)
T 1s70_B          116 -------------------------------------CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE  158 (299)
T ss_dssp             -------------------------------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred             -------------------------------------cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHH
Confidence                                                 2235689999987    56778999999999999999999998


Q ss_pred             HhhCCCcccc--------------------------cccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCC
Q 041922          237 LDTIPVAIHD--------------------------LDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIK  290 (523)
Q Consensus       237 l~~~~~~~~~--------------------------~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~  290 (523)
                      +...+.+++.                          .+..|.||||+|+.+|+.+++++|+++|+       ++|.+|.+
T Consensus       159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-------d~~~~d~~  231 (299)
T 1s70_B          159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-------DVNIKDYD  231 (299)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-------CTTCCCTT
T ss_pred             HhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC-------CCCCcCCC
Confidence            8776666543                          56789999999999999999999999999       99999999


Q ss_pred             CCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhhhHHh
Q 041922          291 GNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHKELVK  358 (523)
Q Consensus       291 G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~~l~~  358 (523)
                      |+||||+|+..|+.+++                   +.++..++ ++.+|..|+||+++|.+...+.++
T Consensus       232 g~tpL~~A~~~~~~~~v-------------------~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~  281 (299)
T 1s70_B          232 GWTPLHAAAHWGKEEAC-------------------RILVENLCDMEAVNKVGQTAFDVADEDILGYLE  281 (299)
T ss_dssp             CCCHHHHHHHTTCHHHH-------------------HHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHH
T ss_pred             CCcHHHHHHhcCCHHHH-------------------HHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999986543                   22223333 588999999999999876555443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=275.66  Aligned_cols=201  Identities=14%  Similarity=0.119  Sum_probs=181.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.+++.  +.+++.+|.+|.||||+|+..|+.+++++|++.+     .+++.+|.+|.||||+|+
T Consensus        61 t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           61 SPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-----AQVNGVTADWHTPLFNAC  133 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT--TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCSSCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHH
Confidence            579999999999999999998  6678889999999999999999999999999986     358999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+++++|++.|++++                                  . +.+|.||||.|+.            
T Consensus       134 ~~~~~~~v~~Ll~~g~~~~----------------------------------~-~~~g~t~L~~A~~------------  166 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASVQ----------------------------------P-ESDLASPIHEAAR------------  166 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCSS----------------------------------C-SCTTSCHHHHHHH------------
T ss_pred             HcCHHHHHHHHHHCCCCCC----------------------------------C-CCCCCCHHHHHHH------------
Confidence            9999999999999987652                                  1 3359999998762            


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhh
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDT  239 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~  239 (523)
                                                        .+..++++.|+++    +.+|..|.||||+|+..|+.+++++|++.
T Consensus       167 ----------------------------------~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          167 ----------------------------------RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             ----------------------------------HTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ----------------------------------cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence                                              2235688889887    66788999999999999999999999997


Q ss_pred             CCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHh
Q 041922          240 IPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKF  301 (523)
Q Consensus       240 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~  301 (523)
                       +++++. |..|+||||+|+.+++.+++++|+++|+       +++.+|.+|+||||+|+..
T Consensus       213 -ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------d~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          213 -GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGA-------DTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             -TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSCCGGGGSCTT
T ss_pred             -CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC-------CCCCcCCCCCCHHHHhcCc
Confidence             899985 8999999999999999999999999999       9999999999999999943

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=275.34  Aligned_cols=215  Identities=16%  Similarity=0.139  Sum_probs=154.3

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHhccc---ccccccccccCCChHHhHHHHcCCHH-HHHHHHhcCcccccccCC
Q 041922           32 KLTRSGDTALHIAAAAGQTNIVSELVEIMGEN---ASNVLKIQNDRGDTALHLAAALGNEA-MCHCMASKDRELISAADE  107 (523)
Q Consensus        32 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~~~~~d~~G~TpLh~A~~~g~~~-iv~~Ll~~~~~~~~~~~~  107 (523)
                      .+|..+.||||.||..|+.++|++|++.+...   ....++..|..|.||||.|+..++.+ ++++|++.|++       
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-------   78 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-------   78 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-------
Confidence            46778889999999999999999999876531   12346788899999999999888764 78888887654       


Q ss_pred             CCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhc
Q 041922          108 GLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHN  187 (523)
Q Consensus       108 ~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (523)
                                                 +|.+|.+|+||||+|+..                                   
T Consensus        79 ---------------------------vn~~d~~G~TpLh~A~~~-----------------------------------   96 (269)
T 4b93_B           79 ---------------------------VNVTSQDGSSPLHVAALH-----------------------------------   96 (269)
T ss_dssp             ---------------------------TTCCCTTSCCHHHHHHHT-----------------------------------
T ss_pred             ---------------------------CCCcCCCCCCHHHHHHHc-----------------------------------
Confidence                                       478899999999988731                                   


Q ss_pred             cCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCc
Q 041922          188 KDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQ  263 (523)
Q Consensus       188 ~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~  263 (523)
                              ++   .+++++|++.    +..+.+|.||+|.|+..++.++++.|++. |++++.+|.+|+||||+|+.+|+
T Consensus        97 --------g~---~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           97 --------GR---ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             --------TC---TTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             --------Cc---HHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCC
Confidence                    12   3488888887    56778899999999999999999999997 89999999999999999999999


Q ss_pred             hhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCC
Q 041922          264 TGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKG  342 (523)
Q Consensus       264 ~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G  342 (523)
                      .+++++|+++|+       ++|.+|..|+||||+|+..|+.+++                   +.++..++ ++.+|++|
T Consensus       165 ~~~v~~Ll~~ga-------dvn~~~~~g~t~Lh~A~~~g~~~~v-------------------~~Ll~~Gad~~~~d~~G  218 (269)
T 4b93_B          165 HELVALLLQHGA-------SINASNNKGNTALHEAVIEKHVFVV-------------------ELLLLHGASVQVLNKRQ  218 (269)
T ss_dssp             GGGHHHHHHTTC-------CTTCBCTTSCBHHHHHHHTTCHHHH-------------------HHHHHTTCCSCCCCTTS
T ss_pred             HHHHHHHHHCCC-------CCCccccCCCcHHHHHHHcCCHHHH-------------------HHHHHCCCCCCCcCCCC
Confidence            999999999999       9999999999999999999996543                   22333333 68999999


Q ss_pred             CChhHHhhhhh
Q 041922          343 KTPKEIFTKTH  353 (523)
Q Consensus       343 ~Tpl~la~~~~  353 (523)
                      +||+|+|.+..
T Consensus       219 ~TpL~~A~~~~  229 (269)
T 4b93_B          219 RTAVDCAEQNS  229 (269)
T ss_dssp             CCSGGGSCTTC
T ss_pred             CCHHHHHHhCC
Confidence            99999998643

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.2e-34  Score=286.28  Aligned_cols=219  Identities=20%  Similarity=0.170  Sum_probs=179.1

Q ss_pred             CCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccc
Q 041922           25 NPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISA  104 (523)
Q Consensus        25 ~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~  104 (523)
                      .|..+.+..|.+|.||||+||..|+.++|++|++.+.     +++.+|..|.||||+|+..|+.+++++|+++|++.   
T Consensus         8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---   79 (364)
T 3ljn_A            8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV-----SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---   79 (364)
T ss_dssp             --------CCHHHHHHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---
T ss_pred             ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---
Confidence            3456677889999999999999999999999999863     58999999999999999999999999999998743   


Q ss_pred             cCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHH
Q 041922          105 ADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVA  184 (523)
Q Consensus       105 ~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  184 (523)
                                                       .+.+|.||||.|+.                                 
T Consensus        80 ---------------------------------~~~~g~t~L~~A~~---------------------------------   93 (364)
T 3ljn_A           80 ---------------------------------SLWHGQKPIHLAVM---------------------------------   93 (364)
T ss_dssp             ---------------------------------CCBTTBCHHHHHHH---------------------------------
T ss_pred             ---------------------------------cccCCCCHHHHHHH---------------------------------
Confidence                                             22468999998762                                 


Q ss_pred             hhccCCCcchhhhhHHHHHHHHHHhc-------------------------ccccCCCChHHHHHHHcC--hHHHHHHHH
Q 041922          185 VHNKDGNARDETATAAVQELKFMKKK-------------------------DQQSGRKATPILIAAKMG--VTEMVEKIL  237 (523)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~v~~Ll~~-------------------------~~~~~~g~tpLh~Aa~~g--~~~~v~~Ll  237 (523)
                                .   +..++++.|+++                         +..+..|.||||+|+..|  +.+++++|+
T Consensus        94 ----------~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll  160 (364)
T 3ljn_A           94 ----------A---NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILV  160 (364)
T ss_dssp             ----------T---TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHH
T ss_pred             ----------c---CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHH
Confidence                      1   123466666664                         126678999999999999  999999999


Q ss_pred             hhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcccc-CCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhh
Q 041922          238 DTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKML-GESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQM  316 (523)
Q Consensus       238 ~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~-~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~  316 (523)
                      +. |++++..|..|+||||+|+.+|+.+++++|+++|+. ...   ++|.+|..|+||||+|+..|+.++          
T Consensus       161 ~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~----------  226 (364)
T 3ljn_A          161 QL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL---RLDYANKQGNSHLHWAILINWEDV----------  226 (364)
T ss_dssp             HH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSC---CTTCCCTTCCCTTHHHHTTTCHHH----------
T ss_pred             Hc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc---cccccCCCCCcHHHHHHHcCCHHH----------
Confidence            98 899999999999999999999999999999999982 011   299999999999999999998554          


Q ss_pred             HHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhh
Q 041922          317 QWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       317 ~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                               ++.++..++ ++.+|.+|+||+++|.+..
T Consensus       227 ---------v~~Ll~~gad~~~~d~~g~tpL~~A~~~g  255 (364)
T 3ljn_A          227 ---------AMRFVEMGIDVNMEDNEHTVPLYLSVRAA  255 (364)
T ss_dssp             ---------HHHHHTTTCCTTCCCTTSCCHHHHHHHTC
T ss_pred             ---------HHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Confidence                     333444444 6899999999999999764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.3e-35  Score=292.62  Aligned_cols=266  Identities=11%  Similarity=0.080  Sum_probs=197.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCc----------------------cccccCCCCCcHHHHHHHcCCHHHHHHHHHHhc
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMS----------------------REAKLTRSGDTALHIAAAAGQTNIVSELVEIMG   61 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~----------------------~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~   61 (523)
                      .+|+.++..|+.+.++.++.+....                      ..+..+..|.||||+|+..|. ++++.|+.   
T Consensus        39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~---  114 (373)
T 2fo1_E           39 HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITR---  114 (373)
T ss_dssp             -------------------------------------------------------CCCHHHHHHHSSS-CCCSCCST---
T ss_pred             cccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhcc---
Confidence            4567777777777666555332111                      123567889999999999654 78877754   


Q ss_pred             ccccccccccc-cCCChHHhHHHHcCCHHHHHHHH--------hcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcC
Q 041922           62 ENASNVLKIQN-DRGDTALHLAAALGNEAMCHCMA--------SKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRG  130 (523)
Q Consensus        62 ~~~~~~~~~~d-~~G~TpLh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~  130 (523)
                          ..++.+| ..|+||||+|+..|+.+++++|+        +.|++++..+..+.+ +++++..++.++ ++|+++  
T Consensus       115 ----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--  188 (373)
T 2fo1_E          115 ----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA--  188 (373)
T ss_dssp             ----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--
T ss_pred             ----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHC--
Confidence                3488888 79999999999999988877776        889999988888877 888888888774 899988  


Q ss_pred             CccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc
Q 041922          131 TYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK  210 (523)
Q Consensus       131 ~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~  210 (523)
                       +++++.+|..|.||||.|+.                                              .+..+++++|+++
T Consensus       189 -ga~~~~~~~~g~t~L~~A~~----------------------------------------------~g~~~~v~~Ll~~  221 (373)
T 2fo1_E          189 -GADPTIYNKSERSALHQAAA----------------------------------------------NRDFGMMVYMLNS  221 (373)
T ss_dssp             -TCCSCCCCTTCCCHHHHHHH----------------------------------------------TTCHHHHHHHTTS
T ss_pred             -CCCCcccCCCCCCHHHHHHH----------------------------------------------CCCHHHHHHHHhc
Confidence             89999999999999998872                                              1224588888865


Q ss_pred             -------ccccCCCChHHHHHHHcC---hHHHHHHHHhhCCCcccc--------cccCCCcHHHHHHHcCchhHHHHHHh
Q 041922          211 -------DQQSGRKATPILIAAKMG---VTEMVEKILDTIPVAIHD--------LDSEKKNLVLLAVENRQTGIYKLLLD  272 (523)
Q Consensus       211 -------~~~~~~g~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~--------~d~~G~t~Lh~A~~~~~~~iv~~Ll~  272 (523)
                             +..|..|.||||+|+..|   +.+++++|++. +++++.        .|..|+||||+|+.+|+.+++++|++
T Consensus       222 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  300 (373)
T 2fo1_E          222 TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG  300 (373)
T ss_dssp             HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH
T ss_pred             CccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHH
Confidence                   556789999999999998   99999999998 788875        67799999999999999999999998


Q ss_pred             cc-ccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhh
Q 041922          273 RK-MLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFT  350 (523)
Q Consensus       273 ~~-~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~  350 (523)
                      ++ +       ++|.+|.+|+||||+|+..|+.+++                   +.++..++ ++.+|.+|+||+++|.
T Consensus       301 ~~~~-------~~n~~d~~g~TpL~~A~~~g~~~iv-------------------~~Ll~~gad~~~~d~~g~t~l~~A~  354 (373)
T 2fo1_E          301 EKGS-------NKDKQDEDGKTPIMLAAQEGRIEVV-------------------MYLIQQGASVEAVDATDHTARQLAQ  354 (373)
T ss_dssp             HSCC-------CTTCCCTTCCCHHHHHHHHTCHHHH-------------------HHHHHTTCCSSCCCSSSCCHHHHHH
T ss_pred             hcCC-------CccCcCCCCCCHHHHHHHcCCHHHH-------------------HHHHHcCCCccCCCCCCCCHHHHHH
Confidence            87 6       9999999999999999999996543                   22233333 5889999999999999


Q ss_pred             hhh
Q 041922          351 KTH  353 (523)
Q Consensus       351 ~~~  353 (523)
                      +..
T Consensus       355 ~~g  357 (373)
T 2fo1_E          355 ANN  357 (373)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.1e-34  Score=270.99  Aligned_cols=216  Identities=15%  Similarity=0.182  Sum_probs=167.3

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCce
Q 041922           32 KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLAN  111 (523)
Q Consensus        32 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l  111 (523)
                      .+|.+|+||||+|+..|+.++++.|++.+... +.+++.+|..|.||||+|+..|+.+++++|+++|+++          
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------   71 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP----------   71 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS----------
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhcc-HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------
Confidence            56788899999999999988888888876421 2358888888999999999999999998888876544          


Q ss_pred             eEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCC
Q 041922          112 CSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGN  191 (523)
Q Consensus       112 ~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (523)
                                              +.+|..|+||||+|+.                                        
T Consensus        72 ------------------------~~~~~~g~t~L~~A~~----------------------------------------   87 (236)
T 1ikn_D           72 ------------------------ELRDFRGNTPLHLACE----------------------------------------   87 (236)
T ss_dssp             ------------------------CCCCTTCCCHHHHHHH----------------------------------------
T ss_pred             ------------------------CCcCCCCCCHHHHHHH----------------------------------------
Confidence                                    6677888888887761                                        


Q ss_pred             cchhhhhHHHHHHHHHHhc----------ccccCCCChHHHHHHHcChHHHHHHHHhhCCCccccccc-CCCcHHHHHHH
Q 041922          192 ARDETATAAVQELKFMKKK----------DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDS-EKKNLVLLAVE  260 (523)
Q Consensus       192 ~~~~~~~~~~~~v~~Ll~~----------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~  260 (523)
                            .+..++++.|+++          +..+..|.||||+|+..|+.+++++|++. |++++.+|. .|+||||+|+.
T Consensus        88 ------~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           88 ------QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             ------HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHH
T ss_pred             ------cCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence                  1224477777764          34567899999999999999999999998 899999997 99999999999


Q ss_pred             cCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCcccccccCC
Q 041922          261 NRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNN  340 (523)
Q Consensus       261 ~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~~~~~n~  340 (523)
                      .|+.+++++|+++|+       +++.+|..|+||||+|+..++.+++                +.+.+.-........|.
T Consensus       161 ~~~~~~v~~Ll~~ga-------~~~~~~~~g~tpl~~A~~~~~~~~~----------------~~Ll~~ga~~~~~~~~~  217 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGA-------DVNRVTYQGYSPYQLTWGRPSTRIQ----------------QQLGQLTLENLQMLPES  217 (236)
T ss_dssp             TTCHHHHHHHHTTTC-------CSCCCCTTCCCGGGGCTTSSCHHHH----------------HHHHTTSCGGGSSCCCC
T ss_pred             cCCHHHHHHHHHcCC-------CCCcccCCCCCHHHHHHccCchHHH----------------HHHHHcchhhhhcCCcc
Confidence            999999999999999       9999999999999999999985543                11111112122468899


Q ss_pred             CCCChhHHhhhh
Q 041922          341 KGKTPKEIFTKT  352 (523)
Q Consensus       341 ~G~Tpl~la~~~  352 (523)
                      +|+||.+...+.
T Consensus       218 ~~~~~~~~~~~~  229 (236)
T 1ikn_D          218 EDEESYDTESEF  229 (236)
T ss_dssp             CTTTCCCCC---
T ss_pred             chHHHHhhhccc
Confidence            999999987654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.7e-32  Score=243.39  Aligned_cols=156  Identities=25%  Similarity=0.300  Sum_probs=144.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      |++|+.||..|+.+.|+.||+.  +.+++.+|.+|+||||+|+..|+.++++.|++.+.     +++.+|.+|+||||+|
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga-----d~~~~d~~g~TpLh~A   77 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA-----DVNAKDSDGRTPLHHA   77 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc-----chhhhccCCCCHHHHH
Confidence            7899999999999999999998  78889999999999999999999999999999864     5999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      ++.|+.+++++|+++|+++                                                             
T Consensus        78 ~~~g~~~~v~~Ll~~gadv-------------------------------------------------------------   96 (169)
T 4gpm_A           78 AENGHKEVVKLLISKGADV-------------------------------------------------------------   96 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-------------------------------------------------------------
T ss_pred             HHcCCHHHHHHHHHCcCCC-------------------------------------------------------------
Confidence            9999999999999999876                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +.+|.+|+||||+|+..|+.+++++|++. |+
T Consensus        97 ------------------------------------------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-ga  127 (169)
T 4gpm_A           97 ------------------------------------------------NAKDSDGRTPLHHAAENGHKEVVKLLISK-GA  127 (169)
T ss_dssp             ------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ------------------------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence                                                            23455789999999999999999999997 89


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      +++.+|.+|+||||+|+++|+.+++++|+++|+
T Consensus       128 d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A          128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999999999999999999999999999

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4e-33  Score=259.66  Aligned_cols=200  Identities=16%  Similarity=0.134  Sum_probs=173.1

Q ss_pred             CCHHHHHHHHHcCCCcccc-ccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHH
Q 041922           13 GQWDNFVQAYENNPMSREA-KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC   91 (523)
Q Consensus        13 g~~~~v~~ll~~~~~~~~~-~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv   91 (523)
                      |+.+.++.+++..  .+.+ ..|.+|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++
T Consensus         2 g~~~~i~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            2 DAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-----DANIQDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ---CCEETTEETT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHcC--CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            5566666677663  3443 348899999999999999999999999864     4889999999999999999999999


Q ss_pred             HHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCcccc
Q 041922           92 HCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQI  171 (523)
Q Consensus        92 ~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~  171 (523)
                      ++|++.++                                 .+++..|..|.||||.|+.                    
T Consensus        75 ~~Ll~~~~---------------------------------~~~~~~~~~g~t~L~~A~~--------------------  101 (223)
T 2f8y_A           75 QILIRNRA---------------------------------TDLDARMHDGTTPLILAAR--------------------  101 (223)
T ss_dssp             HHHHHBTT---------------------------------SCTTCCCTTCCCHHHHHHH--------------------
T ss_pred             HHHHHcCC---------------------------------CCcccCCCCCCcHHHHHHH--------------------
Confidence            99999874                                 2346778899999998762                    


Q ss_pred             chhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCccccc
Q 041922          172 FQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDL  247 (523)
Q Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  247 (523)
                                                ....++++.|+++    +..+..|.||||+|+..|+.+++++|++. |++++.+
T Consensus       102 --------------------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~  154 (223)
T 2f8y_A          102 --------------------------LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQ  154 (223)
T ss_dssp             --------------------------HTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred             --------------------------hCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCc
Confidence                                      2235688888887    66778899999999999999999999997 8999999


Q ss_pred             ccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          248 DSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       248 d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      |..|+||||+|+.+|+.+++++|+++|+       +++.+|..|+||||+|++.++.++
T Consensus       155 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------~~~~~~~~g~t~l~~A~~~~~~~i  206 (223)
T 2f8y_A          155 NNREETPLFLAAREGSYETAKVLLDHFA-------NRDITDHMDRLPRDIAQERMHHDI  206 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTC-------CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcCC-------CCccccccCCCHHHHHHHhcchHH
Confidence            9999999999999999999999999999       999999999999999999998654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=6.3e-32  Score=253.23  Aligned_cols=206  Identities=19%  Similarity=0.158  Sum_probs=169.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      .++||.|+..|+.+.++.+++.. +.+++.+|..|+||||+|+..|+.+++++|++.+.+-.....+.+|.+|.||||+|
T Consensus         4 ~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A   82 (232)
T 2rfa_A            4 ESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA   82 (232)
T ss_dssp             TCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence            35799999999999999999874 56788899999999999999999999999999876422223477888999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.+++++|+++|++++..+..                                    +.++...            
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~------------------------------------~~~~~~~------------  114 (232)
T 2rfa_A           83 VINQNVNLVRALLARGASVSARATG------------------------------------SVFHYRP------------  114 (232)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCS------------------------------------GGGSCCT------------
T ss_pred             HHcCCHHHHHHHHhCCCCCCcccCC------------------------------------cceeecc------------
Confidence            9999999999999999877432211                                    1111111            


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +..+..|.||||+|+..|+.+++++|+++ |+
T Consensus       115 ------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga  145 (232)
T 2rfa_A          115 ------------------------------------------------HNLIYYGEHPLSFAACVGSEEIVRLLIEH-GA  145 (232)
T ss_dssp             ------------------------------------------------TCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TC
T ss_pred             ------------------------------------------------cccccCCCCHHHHHHHcCCHHHHHHHHHC-CC
Confidence                                                            33566799999999999999999999997 89


Q ss_pred             cccccccCCCcHHHHHHHcCchhHH----HHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIY----KLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv----~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      +++.+|.+|+||||+|+.+++.+++    ++|+++|+.... ....+.+|.+|+||||+|+..|+.+++
T Consensus       146 ~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~-~~~~~~~~~~g~tpl~~A~~~g~~~~v  213 (232)
T 2rfa_A          146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL-KSLELVPNNQGLTPFKLAGVEGNIVMF  213 (232)
T ss_dssp             CTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSS-CCGGGCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhh-hhhhccCCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999999999999988    999999982110 001178999999999999999997654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=2.6e-32  Score=256.65  Aligned_cols=211  Identities=21%  Similarity=0.173  Sum_probs=183.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      ..+|+.|+..|+.+.++.+++.  +.+++..+..|.||||+|+..|+.+++++|++.+.+    .....+..|.||||+|
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI----VDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCBTTTTBCHHHHH
T ss_pred             chHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc----chhhcCCcCCChhHHH
Confidence            4579999999999999999998  677788899999999999999999999999998642    2334456699999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.+++++|++.|+++                                  +.+|..|.||||.|+.           
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~----------------------------------~~~~~~g~t~l~~A~~-----------  118 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADP----------------------------------SLIDGEGCSCIHLAAQ-----------  118 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCT----------------------------------TCCCTTSCCHHHHHHH-----------
T ss_pred             HHcCCHHHHHHHHHcCCCC----------------------------------cccCCCCCCHHHHHHH-----------
Confidence            9999999999999987654                                  6678899999998762           


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcCh-HHHHHHHH
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGV-TEMVEKIL  237 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~-~~~v~~Ll  237 (523)
                                                         .+..++++.|+++    +..+..|.||||+|+..++ .+++++|+
T Consensus       119 -----------------------------------~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  163 (240)
T 3eu9_A          119 -----------------------------------FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL  163 (240)
T ss_dssp             -----------------------------------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred             -----------------------------------cCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence                                               1224588888887    5677889999999997776 78889988


Q ss_pred             hhCCCccccccc-CCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          238 DTIPVAIHDLDS-EKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       238 ~~~~~~~~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      +. +.+++..+. .|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+||||+|++.++.+++
T Consensus       164 ~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------~~~~~~~~g~t~l~~A~~~~~~~~v  226 (240)
T 3eu9_A          164 TF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA-------NVDAQNIKGESALDLAKQRKNVWMI  226 (240)
T ss_dssp             HT-TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC-------CTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             hc-CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC-------CCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            86 899999997 99999999999999999999999999       9999999999999999999996543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=1.1e-31  Score=245.66  Aligned_cols=183  Identities=20%  Similarity=0.227  Sum_probs=159.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH
Q 041922            2 EVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL   81 (523)
Q Consensus         2 ~~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~   81 (523)
                      +.++|+.|+..|+.+.++.++.+. +.+++..|.+|.||||+|+..|+.+++++|++.|.     +++.+|..|.||||+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~l~~   78 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-----DINLQNSISDSPYLY   78 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHH
T ss_pred             cccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHH
Confidence            357899999999999999999875 34677888999999999999999999999998764     488899999999999


Q ss_pred             HHHcCCHHHHHHHHhcCc-ccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCC
Q 041922           82 AAALGNEAMCHCMASKDR-ELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVP  160 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~-~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l  160 (523)
                      |+..|+.+++++|++.+. ++                                                           
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~-----------------------------------------------------------   99 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDL-----------------------------------------------------------   99 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCT-----------------------------------------------------------
T ss_pred             HHHcCCHHHHHHHHhccCccc-----------------------------------------------------------
Confidence            999999999999995542 22                                                           


Q ss_pred             CCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhC
Q 041922          161 ETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTI  240 (523)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~  240 (523)
                                                                        +..+..|.||||+|+..|+.+++++|++..
T Consensus       100 --------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  129 (201)
T 3hra_A          100 --------------------------------------------------NKHNRYGGNALIPAAEKGHIDNVKLLLEDG  129 (201)
T ss_dssp             --------------------------------------------------TCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred             --------------------------------------------------ccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence                                                              234456889999999999999999999985


Q ss_pred             CCcccccccCCCcHHHHHHHcCc-----hhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          241 PVAIHDLDSEKKNLVLLAVENRQ-----TGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       241 ~~~~~~~d~~G~t~Lh~A~~~~~-----~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      +++++.+|..|+||||+|+..++     .+++++|+++|+       +++.+|.+|+||||+|+..|+.++
T Consensus       130 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga-------~~~~~~~~g~t~l~~A~~~~~~~~  193 (201)
T 3hra_A          130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA-------DQSIKDNSGRTAMDYANQKGYTEI  193 (201)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC-------CTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC-------CCCccCCCCCCHHHHHHHcCCHhH
Confidence            59999999999999999999887     899999999999       999999999999999999998654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=1.6e-32  Score=265.68  Aligned_cols=197  Identities=16%  Similarity=0.118  Sum_probs=134.6

Q ss_pred             HHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCH
Q 041922            9 FAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE   88 (523)
Q Consensus         9 Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~   88 (523)
                      ++...+.+.+.++|.+.   +.+.+|.+|.||||+|+..|+.+++++|++.+.     +++.+  +|+||||+|+..|+.
T Consensus         6 ~i~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~--~g~t~L~~A~~~g~~   75 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGA-----LKNLL--ENEFPLHQAATLEDT   75 (285)
T ss_dssp             TGGGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTG-----GGSCC--TTCCHHHHHTTSSSC
T ss_pred             HHHhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCCC--CCCCHHHHHHHcCCH
Confidence            45678899999999884   467889999999999999999999999999864     36666  499999999999999


Q ss_pred             HHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCc
Q 041922           89 AMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLEN  168 (523)
Q Consensus        89 ~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~  168 (523)
                      +++++|+++|++++                                  .+|..|+||||+|+.                 
T Consensus        76 ~~v~~Ll~~ga~~~----------------------------------~~d~~g~t~L~~A~~-----------------  104 (285)
T 3kea_A           76 KIVKILLFSGLDDS----------------------------------QFDDKGNTALYYAVD-----------------  104 (285)
T ss_dssp             HHHHHHHHTTCCTT----------------------------------CCCTTSCCHHHHHHH-----------------
T ss_pred             HHHHHHHHCCCCCC----------------------------------CcCCCCCcHHHHHHH-----------------
Confidence            99999999987764                                  445556666665541                 


Q ss_pred             cccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCC-ChHHHHHHHcChHHHHHHHHhhCCCc
Q 041922          169 DQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRK-ATPILIAAKMGVTEMVEKILDTIPVA  243 (523)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~  243 (523)
                                                   .+..+++++|+++    +.++..| .||||+|+..|+.+++++|+++ +.+
T Consensus       105 -----------------------------~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~  154 (285)
T 3kea_A          105 -----------------------------SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPS  154 (285)
T ss_dssp             -----------------------------TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCT
T ss_pred             -----------------------------cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCc
Confidence                                         1113355555554    3444455 4666666666666666666654 333


Q ss_pred             cccccc-CCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcH-hHHHHHhCCCC
Q 041922          244 IHDLDS-EKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSA-LHLAAKFGEYG  305 (523)
Q Consensus       244 ~~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~Tp-LH~Aa~~~~~~  305 (523)
                      .  .|. .|+||||+|+.+|+.+++++|+++|+       ++|.+|..|+|| ||+|+..++.+
T Consensus       155 ~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-------d~n~~~~~g~t~~L~~A~~~~~~~  209 (285)
T 3kea_A          155 T--FDLAILLSCIHITIKNGHVDMMILLLDYMT-------STNTNNSLLFIPDIKLAIDNKDIE  209 (285)
T ss_dssp             T--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHH-------HTCTTCCCBCCTTHHHHHHHTCHH
T ss_pred             c--ccccCCccHHHHHHHcChHHHHHHHHHcCC-------CCCcccCCCCChHHHHHHHcCCHH
Confidence            2  222 55666666666666666666666665       555666666665 66666655543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=6.4e-31  Score=253.65  Aligned_cols=216  Identities=19%  Similarity=0.171  Sum_probs=160.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCC
Q 041922           30 EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGL  109 (523)
Q Consensus        30 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  109 (523)
                      ++.+|.+|+||||+||..|+.++|++|++.+.+  ...++.+|..|+||||+|+..|+.+++++|+++|+++        
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--------   71 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG--HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV--------   71 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT--SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--------
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC--cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------
Confidence            356899999999999999999999999998753  2348899999999999999999999999999987655        


Q ss_pred             ceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccC
Q 041922          110 ANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKD  189 (523)
Q Consensus       110 ~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (523)
                                                +.+|..|+||||+|+..                                     
T Consensus        72 --------------------------~~~~~~g~tpL~~A~~~-------------------------------------   88 (282)
T 1oy3_D           72 --------------------------LVAERGGHTALHLACRV-------------------------------------   88 (282)
T ss_dssp             --------------------------SCCCTTSCCHHHHHTTT-------------------------------------
T ss_pred             --------------------------CCCCCCCCCHHHHHHHc-------------------------------------
Confidence                                      67788999999988731                                     


Q ss_pred             CCcchhhhhHHHHHHHHHHhcc-----------------cccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCC
Q 041922          190 GNARDETATAAVQELKFMKKKD-----------------QQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKK  252 (523)
Q Consensus       190 ~~~~~~~~~~~~~~v~~Ll~~~-----------------~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~  252 (523)
                               +..++++.|+++.                 .....+.+|++.++..+....+..++...+.+++..|..|+
T Consensus        89 ---------~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           89 ---------RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             ---------TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             ---------CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence                     1244777777651                 12245778888888877776666666556889999999999


Q ss_pred             cHHHHHHHcCchhHHHHHHhccccCCccccccccccCC-CCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCC
Q 041922          253 NLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIK-GNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMP  331 (523)
Q Consensus       253 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~-G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~  331 (523)
                      ||||+|+.+|+.+++++|+++|+       +++.+|.. |+||||+|+..|+.+++                   +.++.
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~-------~~~~~~~~~g~tpL~~A~~~~~~~~v-------------------~~Ll~  213 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGA-------DLNKPEPTCGRTPLHLAVEAQAASVL-------------------ELLLK  213 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTC-------CTTCCCTTTCCCHHHHHHHTTCHHHH-------------------HHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC-------CCCCCCCCCCcCHHHHHHHcCCHHHH-------------------HHHHH
Confidence            99999999999999999999999       99999864 99999999999985543                   22222


Q ss_pred             ccc-ccccCCCCCChhHHhhhhh
Q 041922          332 RYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       332 ~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                      .++ ++.+|.+|+||+++|.+..
T Consensus       214 ~gad~~~~d~~g~tpL~~A~~~~  236 (282)
T 1oy3_D          214 AGADPTARMYGGRTPLGSALLRP  236 (282)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             cCCCCcccccCCCCHHHHHHHcC
Confidence            333 5889999999999998654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=7e-31  Score=246.85  Aligned_cols=212  Identities=17%  Similarity=0.122  Sum_probs=180.8

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc
Q 041922           31 AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA  110 (523)
Q Consensus        31 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  110 (523)
                      +..|..|.||||.|+..|+.+++++|++.+.     +++.+|..|.||||+|++.|+.+++++|++.|++++.       
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-------   70 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGY-----DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ-------   70 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCC-----CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh-------
Confidence            4568899999999999999999999999764     4889999999999999999999999999999876532       


Q ss_pred             eeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCC
Q 041922          111 NCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDG  190 (523)
Q Consensus       111 l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (523)
                                                ..+..|.||||.|+.                                       
T Consensus        71 --------------------------~~~~~~~t~L~~A~~---------------------------------------   85 (240)
T 3eu9_A           71 --------------------------LGGDLNSTPLHWATR---------------------------------------   85 (240)
T ss_dssp             --------------------------CBTTTTBCHHHHHHH---------------------------------------
T ss_pred             --------------------------hcCCcCCChhHHHHH---------------------------------------
Confidence                                      334568999998762                                       


Q ss_pred             CcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCc-hh
Q 041922          191 NARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQ-TG  265 (523)
Q Consensus       191 ~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~-~~  265 (523)
                             .+..++++.|++.    +..+..|.||||+|+..|+.+++++|++. +++++..|..|.||||+|+..++ .+
T Consensus        86 -------~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           86 -------QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             -------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred             -------cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHH
Confidence                   2235688889887    56678899999999999999999999997 89999999999999999997776 89


Q ss_pred             HHHHHHhccccCCccccccccccC-CCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCC
Q 041922          266 IYKLLLDRKMLGESDLNIFEHVDI-KGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGK  343 (523)
Q Consensus       266 iv~~Ll~~~~~~~~~~~~in~~d~-~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~  343 (523)
                      ++++|++.|.       +++.++. .|+||||+|+..++.+++                   +.++..+. ++.+|.+|+
T Consensus       158 ~~~~L~~~~~-------~~~~~~~~~g~t~L~~A~~~~~~~~v-------------------~~Ll~~g~~~~~~~~~g~  211 (240)
T 3eu9_A          158 PTRLLLTFNV-------SVNLGDKYHKNTALHWAVLAGNTTVI-------------------SLLLEAGANVDAQNIKGE  211 (240)
T ss_dssp             THHHHHHTTC-------CTTCCCTTTCCCHHHHHHHHTCHHHH-------------------HHHHHHTCCTTCBCTTSC
T ss_pred             HHHHHHhcCC-------CcchhhccCCCcHHHHHHHcCCHHHH-------------------HHHHHcCCCCCCcCCCCC
Confidence            9999999999       9999997 999999999999986543                   11222222 588999999


Q ss_pred             ChhHHhhhhh
Q 041922          344 TPKEIFTKTH  353 (523)
Q Consensus       344 Tpl~la~~~~  353 (523)
                      ||+++|.+..
T Consensus       212 t~l~~A~~~~  221 (240)
T 3eu9_A          212 SALDLAKQRK  221 (240)
T ss_dssp             BHHHHHHHTT
T ss_pred             CHHHHHHHcC
Confidence            9999999864

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4.8e-31  Score=251.22  Aligned_cols=200  Identities=19%  Similarity=0.169  Sum_probs=163.0

Q ss_pred             chHHHHHHHcCCHHHHHHHH----HcCCCccccc----cCCCCCcHHHHHHHc---CCHHHHHHHHHHhcccc--cccc-
Q 041922            3 VNCLSKFAMRGQWDNFVQAY----ENNPMSREAK----LTRSGDTALHIAAAA---GQTNIVSELVEIMGENA--SNVL-   68 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll----~~~~~~~~~~----~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~--~~~~-   68 (523)
                      -.+||.|+..|+.+.++.++    ..  +.+++.    .|..|+||||+|+..   |+.+++++|++.+.+..  ...+ 
T Consensus         3 ~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            36899999999998654444    45  566776    799999999999999   99999999999986421  0011 


Q ss_pred             ---cccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCc
Q 041922           69 ---KIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSS  145 (523)
Q Consensus        69 ---~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tp  145 (523)
                         ..+|..|.||||+|+..|+.+++++|+++|++++..+                                  ..+.++
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~----------------------------------~~~~~~  126 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA----------------------------------CGRFFQ  126 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------------------------CSGGGS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc----------------------------------cccccc
Confidence               1345789999999999999999999999988774432                                  222111


Q ss_pred             cccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHH
Q 041922          146 RDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAA  225 (523)
Q Consensus       146 Lh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa  225 (523)
                      ...                                                              +..+..|.||||+|+
T Consensus       127 ~~~--------------------------------------------------------------~~~~~~g~tpL~~A~  144 (256)
T 2etb_A          127 KHQ--------------------------------------------------------------GTCFYFGELPLSLAA  144 (256)
T ss_dssp             CCS--------------------------------------------------------------SSCCCSCSSHHHHHH
T ss_pred             ccc--------------------------------------------------------------cccccCCCCHHHHHH
Confidence            110                                                              223446999999999


Q ss_pred             HcChHHHHHHHHhh--CCCcccccccCCCcHHHHHHH--cCchh-------HHHHHHhccccCCcccccc-------ccc
Q 041922          226 KMGVTEMVEKILDT--IPVAIHDLDSEKKNLVLLAVE--NRQTG-------IYKLLLDRKMLGESDLNIF-------EHV  287 (523)
Q Consensus       226 ~~g~~~~v~~Ll~~--~~~~~~~~d~~G~t~Lh~A~~--~~~~~-------iv~~Ll~~~~~~~~~~~~i-------n~~  287 (523)
                      ..|+.+++++|++.  .|++++.+|.+|+||||+|+.  +++.+       ++++|+++|+       ++       +.+
T Consensus       145 ~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga-------~~~~~~~~~~~~  217 (256)
T 2etb_A          145 CTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA-------RLCPTVQLEEIS  217 (256)
T ss_dssp             HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH-------HHSTTCCGGGCC
T ss_pred             HcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC-------Cccccccccccc
Confidence            99999999999993  499999999999999999999  78888       9999999999       88       999


Q ss_pred             cCCCCcHhHHHHHhCCCCCc
Q 041922          288 DIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       288 d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      |.+|+||||+|+..|+.+++
T Consensus       218 d~~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          218 NHQGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             CTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHH
Confidence            99999999999999997654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=1.3e-30  Score=244.04  Aligned_cols=178  Identities=20%  Similarity=0.134  Sum_probs=163.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.+++.  +.+++..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+
T Consensus        42 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~  114 (231)
T 3aji_A           42 TALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA-----HVNAVNQNGCTPLHYAA  114 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHH
Confidence            579999999999999999998  67788899999999999999999999999999864     48899999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+++++|+++|++++                                                             
T Consensus       115 ~~~~~~~~~~Ll~~g~~~~-------------------------------------------------------------  133 (231)
T 3aji_A          115 SKNRHEIAVMLLEGGANPD-------------------------------------------------------------  133 (231)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-------------------------------------------------------------
T ss_pred             HcCCHHHHHHHHHcCCCCC-------------------------------------------------------------
Confidence            9999999999999987652                                                             


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCc
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVA  243 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  243 (523)
                                                                      ..+..|.||||+|+..|+.+++++|++. +++
T Consensus       134 ------------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~  164 (231)
T 3aji_A          134 ------------------------------------------------AKDHYDATAMHRAAAKGNLKMVHILLFY-KAS  164 (231)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCC
T ss_pred             ------------------------------------------------CcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCC
Confidence                                                            2344689999999999999999999996 899


Q ss_pred             ccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCC
Q 041922          244 IHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYG  305 (523)
Q Consensus       244 ~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~  305 (523)
                      ++.+|..|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+||||+|+..++.+
T Consensus       165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------~~~~~~~~g~t~l~~A~~~~~~~  219 (231)
T 3aji_A          165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-------SIYIENKEEKTPLQVAKGGLGLI  219 (231)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------CSCCCCTTSCCHHHHSCHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC-------CCCCCCCCCCCHHHHHHhhHHHH
Confidence            99999999999999999999999999999999       99999999999999998877643

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=6.2e-31  Score=233.27  Aligned_cols=147  Identities=25%  Similarity=0.341  Sum_probs=136.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCC
Q 041922           39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGN  118 (523)
Q Consensus        39 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~  118 (523)
                      ++|+.||+.|+.++|+.|++.|.     ++|.+|.+|+||||+|+..++.+++++|+++|+++                 
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Ga-----dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-----------------   63 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGA-----DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-----------------   63 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-----------------
Confidence            47999999999999999999864     59999999999999999999999999999998876                 


Q ss_pred             cccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhh
Q 041922          119 LEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT  198 (523)
Q Consensus       119 ~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (523)
                                                                                                      
T Consensus        64 --------------------------------------------------------------------------------   63 (169)
T 4gpm_A           64 --------------------------------------------------------------------------------   63 (169)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCC
Q 041922          199 AAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE  278 (523)
Q Consensus       199 ~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  278 (523)
                                  +.+|.+|+||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|+++|+.+++++|+++|+   
T Consensus        64 ------------~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga---  127 (169)
T 4gpm_A           64 ------------NAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA---  127 (169)
T ss_dssp             ------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---
T ss_pred             ------------hhhccCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---
Confidence                        23455689999999999999999999997 89999999999999999999999999999999999   


Q ss_pred             ccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          279 SDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       279 ~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                          +++.+|.+|+||||+|++.|+.+++
T Consensus       128 ----d~~~~d~~G~TpL~~A~~~g~~~iv  152 (169)
T 4gpm_A          128 ----DVNTSDSDGRTPLDLAREHGNEEVV  152 (169)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ----CccccCCCCCCHHHHHHHcCCHHHH
Confidence                9999999999999999999996654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.1e-32  Score=257.26  Aligned_cols=214  Identities=14%  Similarity=0.096  Sum_probs=180.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCC--ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPM--SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL   81 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~--~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~   81 (523)
                      .+||.|+..|+.+.++.+++..+.  .+++..|..|.||||+|+..|+.+++++|++.|     .+++.+|..|.||||+
T Consensus        10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~   84 (236)
T 1ikn_D           10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-----CDPELRDFRGNTPLHL   84 (236)
T ss_dssp             CTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-----CCSCCCCTTCCCHHHH
T ss_pred             chhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHH
Confidence            579999999999999999887432  367888999999999999999999999999875     3589999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCC
Q 041922           82 AAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPE  161 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~  161 (523)
                      |+..|+.+++++|++.+++...                            ...++..|..|.||||.|+.          
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~----------------------------~~~~~~~~~~g~t~L~~A~~----------  126 (236)
T 1ikn_D           85 ACEQGCLASVGVLTQSCTTPHL----------------------------HSILKATNYNGHTCLHLASI----------  126 (236)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSS----------------------------SCGGGCCCTTCCCHHHHHHH----------
T ss_pred             HHHcCCHHHHHHHHhcccchhH----------------------------HHHhhccCCCCCCHHHHHHH----------
Confidence            9999999999999999875421                            23457788999999998862          


Q ss_pred             CCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccC-CCChHHHHHHHcChHHHHHHH
Q 041922          162 TPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSG-RKATPILIAAKMGVTEMVEKI  236 (523)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~-~g~tpLh~Aa~~g~~~~v~~L  236 (523)
                                                          .+..+++++|+++    +.++. .|.||||+|+..|+.+++++|
T Consensus       127 ------------------------------------~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  170 (236)
T 1ikn_D          127 ------------------------------------HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL  170 (236)
T ss_dssp             ------------------------------------TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ------------------------------------cCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                                                1225588999887    55665 899999999999999999999


Q ss_pred             HhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhC
Q 041922          237 LDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFG  302 (523)
Q Consensus       237 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~  302 (523)
                      ++. |++++.+|..|+||||+|+.+|+.+++++|+++|+..     ....++.+|.||.+.+....
T Consensus       171 l~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-----~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          171 LKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN-----LQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             HTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG-----GSSCCCCCTTTCCCCC----
T ss_pred             HHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh-----hhcCCccchHHHHhhhcccc
Confidence            997 9999999999999999999999999999999999932     33488999999988776543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=4.7e-31  Score=251.79  Aligned_cols=202  Identities=21%  Similarity=0.259  Sum_probs=162.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHH----cCCCcccccc----CCCCCcHHHHHH---HcCCHHHHHHHHHHhcccc------
Q 041922            2 EVNCLSKFAMRGQWDNFVQAYE----NNPMSREAKL----TRSGDTALHIAA---AAGQTNIVSELVEIMGENA------   64 (523)
Q Consensus         2 ~~~~L~~Aa~~g~~~~v~~ll~----~~~~~~~~~~----~~~g~T~Lh~Aa---~~g~~~~v~~Ll~~~~~~~------   64 (523)
                      +-.+||.|+..|+.+.++.+++    .  +.+++..    |..|.||||+|+   +.|+.+++++|++.+.+..      
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            4578999999999998777776    5  3344433    377999999999   7799999999999876321      


Q ss_pred             cccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCC
Q 041922           65 SNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKS  144 (523)
Q Consensus        65 ~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~t  144 (523)
                      ...++.+|..|+||||+|+..|+.+++++|+++|++++..+...-                         ....|.    
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~-------------------------~~~~~~----  133 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF-------------------------FQPKDE----  133 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECC-------------------------CSSSCC----
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccc-------------------------cCcccc----
Confidence            133566777999999999999999999999999987754322100                         000000    


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHH
Q 041922          145 SRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIA  224 (523)
Q Consensus       145 pLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~A  224 (523)
                                                                                        ...+..|.||||+|
T Consensus       134 ------------------------------------------------------------------~~~~~~g~tpL~~A  147 (260)
T 3jxi_A          134 ------------------------------------------------------------------GGYFYFGELPLSLA  147 (260)
T ss_dssp             ------------------------------------------------------------------CCSCCSCSSHHHHH
T ss_pred             ------------------------------------------------------------------cccccCCCCHHHHH
Confidence                                                                              12335699999999


Q ss_pred             HHcChHHHHHHHHhh--CCCcccccccCCCcHHHHHHHcCc---------hhHHHHHHhccccCCcccccc-------cc
Q 041922          225 AKMGVTEMVEKILDT--IPVAIHDLDSEKKNLVLLAVENRQ---------TGIYKLLLDRKMLGESDLNIF-------EH  286 (523)
Q Consensus       225 a~~g~~~~v~~Ll~~--~~~~~~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~~~~~~i-------n~  286 (523)
                      +..|+.+++++|++.  .|++++.+|.+|+||||+|+..++         .+++++|+++|+       ++       +.
T Consensus       148 ~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga-------~~~~~~~~~~~  220 (260)
T 3jxi_A          148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA-------KLFPDTNLEAL  220 (260)
T ss_dssp             HHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH-------HHCTTCCGGGC
T ss_pred             HHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc-------ccccccchhhc
Confidence            999999999999993  389999999999999999999887         699999999999       77       78


Q ss_pred             ccCCCCcHhHHHHHhCCCCCc
Q 041922          287 VDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       287 ~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      +|.+|+||||+|++.|+.+++
T Consensus       221 ~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          221 LNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999997654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.7e-30  Score=242.09  Aligned_cols=187  Identities=19%  Similarity=0.146  Sum_probs=156.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEec
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWS  115 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~  115 (523)
                      .|+||||+|+..|+.++++.|++..    +.+++.+|.+|+||||+|+..|+.+++++|++.|+++.....         
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---------   68 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE----GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM---------   68 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT----CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCC---------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc----CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccc---------
Confidence            5899999999999999999999862    246999999999999999999999999999999987632110         


Q ss_pred             cCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchh
Q 041922          116 SGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDE  195 (523)
Q Consensus       116 ~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (523)
                                                                                                      
T Consensus        69 --------------------------------------------------------------------------------   68 (232)
T 2rfa_A           69 --------------------------------------------------------------------------------   68 (232)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCccccccc-------------CCCcHHHHHHHcC
Q 041922          196 TATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDS-------------EKKNLVLLAVENR  262 (523)
Q Consensus       196 ~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-------------~G~t~Lh~A~~~~  262 (523)
                                     +..|..|.||||+|+..|+.+++++|+++ +++++..+.             +|+||||+|+.+|
T Consensus        69 ---------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  132 (232)
T 2rfa_A           69 ---------------TSELYEGQTALHIAVINQNVNLVRALLAR-GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG  132 (232)
T ss_dssp             ---------------CSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT
T ss_pred             ---------------cccCCCCcCHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCcceeecccccccCCCCHHHHHHHcC
Confidence                           23455799999999999999999999997 889888766             7999999999999


Q ss_pred             chhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-------c
Q 041922          263 QTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-------F  335 (523)
Q Consensus       263 ~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-------~  335 (523)
                      +.+++++|+++|+       ++|.+|.+|+||||+|+..++.+++.               +.++.++..+.       .
T Consensus       133 ~~~~v~~Ll~~ga-------~~~~~d~~g~t~L~~A~~~~~~~~~~---------------~i~~~Ll~~g~~~~~~~~~  190 (232)
T 2rfa_A          133 SEEIVRLLIEHGA-------DIRAQDSLGNTVLHILILQPNKTFAC---------------QMYNLLLSYDGGDHLKSLE  190 (232)
T ss_dssp             CHHHHHHHHHTTC-------CTTCCCTTSCCHHHHHHTCSCHHHHH---------------HHHHHHHHTTCSCSSCCGG
T ss_pred             CHHHHHHHHHCCC-------CCCCCCCCCCCHHHHHHHcCChHHHH---------------HHHHHHHhcCCchhhhhhh
Confidence            9999999999999       99999999999999999999854320               00111221111       2


Q ss_pred             cccCCCCCChhHHhhhhh
Q 041922          336 LGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       336 ~~~n~~G~Tpl~la~~~~  353 (523)
                      +.+|++|+||+++|.+..
T Consensus       191 ~~~~~~g~tpl~~A~~~g  208 (232)
T 2rfa_A          191 LVPNNQGLTPFKLAGVEG  208 (232)
T ss_dssp             GCCCTTSCCHHHHHHHHT
T ss_pred             ccCCCCCCCHHHHHHHcC
Confidence            689999999999999764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.2e-31  Score=262.96  Aligned_cols=176  Identities=16%  Similarity=0.207  Sum_probs=121.4

Q ss_pred             ccccc-cccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCC
Q 041922           66 NVLKI-QNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKS  144 (523)
Q Consensus        66 ~~~~~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~t  144 (523)
                      .++|. +|.+|+||||+|+..|+.+++++|+++|++                                  ++.+|.+|+|
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad----------------------------------~n~~d~~g~T  166 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN----------------------------------RLYGDNMGES  166 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------------------------TTBCCTTCCC
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------------------------------CCCcCCCCCC
Confidence            34666 677888888888888888888888877654                                  4778889999


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhH----HHHHHHHHHhc-ccccCCCCh
Q 041922          145 SRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATA----AVQELKFMKKK-DQQSGRKAT  219 (523)
Q Consensus       145 pLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~v~~Ll~~-~~~~~~g~t  219 (523)
                      |||+|+.                                           .++..    ..++++.+... +.+|..|+|
T Consensus       167 pLh~A~~-------------------------------------------~g~~~~~~~~~~ll~~~~~~~~~~d~~g~t  203 (327)
T 1sw6_A          167 CLVKAVK-------------------------------------------SVNNYDSGTFEALLDYLYPCLILEDSMNRT  203 (327)
T ss_dssp             HHHHHHH-------------------------------------------SSHHHHTTCHHHHHHHHGGGGGEECTTCCC
T ss_pred             HHHHHHH-------------------------------------------hcccccHHHHHHHHHhhhccccCCCCCCCC
Confidence            9998872                                           12211    12244444332 677889999


Q ss_pred             HHHHHHH----cChHHHHHHHHhhC-------------------CCcccccccCCCcHHHHHHHcCchhHHHHHHhcccc
Q 041922          220 PILIAAK----MGVTEMVEKILDTI-------------------PVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKML  276 (523)
Q Consensus       220 pLh~Aa~----~g~~~~v~~Ll~~~-------------------~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  276 (523)
                      |||+|+.    .|+.+++++|++..                   +++++.+|..|+||||.|+.      +++|+++   
T Consensus       204 pLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---  274 (327)
T 1sw6_A          204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN---  274 (327)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH---
T ss_pred             HHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh---
Confidence            9999998    89999999998763                   78889999999999999985      8888876   


Q ss_pred             CCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhh
Q 041922          277 GESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKT  352 (523)
Q Consensus       277 ~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~  352 (523)
                            ++|.+|.+|+||||+|+..|+.+++                   +.++..++ ++.+|++|+||+|+|.+.
T Consensus       275 ------~~n~~d~~G~TpLh~A~~~g~~~~v-------------------~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          275 ------MLNAQDSNGDTCLNIAARLGNISIV-------------------DALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             ------TTTCCCTTSCCHHHHHHHHCCHHHH-------------------HHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             ------CCCCCCCCCCCHHHHHHHcCCHHHH-------------------HHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence                  4678899999999999999985543                   22333333 588999999999998753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.7e-31  Score=263.83  Aligned_cols=193  Identities=16%  Similarity=0.139  Sum_probs=148.7

Q ss_pred             CCHHHHHHHHHcCCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCC---H
Q 041922           13 GQWDNFVQAYENNPMSREAK-LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN---E   88 (523)
Q Consensus        13 g~~~~v~~ll~~~~~~~~~~-~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~---~   88 (523)
                      +..+.+.+++.+. +.+++. +|..|+||||+||..|+.++|++|++.|.     +++.+|.+|+||||+|+..|+   .
T Consensus       107 ~~~~~~~~~l~~~-g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga-----d~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          107 SLLQEVNDAFPNT-QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-----NRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             HHHHHHHHHCTTS-CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             hhHHHHHHHHHhc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHhcccccH
Confidence            3334444444433 678888 89999999999999999999999999864     589999999999999999999   6


Q ss_pred             HHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCc
Q 041922           89 AMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLEN  168 (523)
Q Consensus        89 ~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~  168 (523)
                      ++++.|++.+.                                 .+++.+|..|+||||+|+..                
T Consensus       181 ~~~~~ll~~~~---------------------------------~~~~~~d~~g~tpLh~A~~~----------------  211 (327)
T 1sw6_A          181 GTFEALLDYLY---------------------------------PCLILEDSMNRTILHHIIIT----------------  211 (327)
T ss_dssp             TCHHHHHHHHG---------------------------------GGGGEECTTCCCHHHHHHHH----------------
T ss_pred             HHHHHHHHhhh---------------------------------ccccCCCCCCCCHHHHHHHH----------------
Confidence            88888888752                                 23477899999999988620                


Q ss_pred             cccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc------------------------ccccCCCChHHHHH
Q 041922          169 DQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK------------------------DQQSGRKATPILIA  224 (523)
Q Consensus       169 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~------------------------~~~~~~g~tpLh~A  224 (523)
                          ....++                      .++++.|++.                        +.++..|.||||.|
T Consensus       212 ----~~~~g~----------------------~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a  265 (327)
T 1sw6_A          212 ----SGMTGC----------------------SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN  265 (327)
T ss_dssp             ----HTSTTC----------------------HHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHH
T ss_pred             ----cccccc----------------------HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHH
Confidence                000111                      2244444322                        45678899999999


Q ss_pred             HHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhC
Q 041922          225 AKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFG  302 (523)
Q Consensus       225 a~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~  302 (523)
                      +.      +++|++.   +++.+|.+|+||||+|+++|+.+++++|+++|+       +++.+|.+|+||||+|++.|
T Consensus       266 ~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga-------d~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          266 LD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA-------DPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC-------CTTCCCTTSCCGGGGTCC--
T ss_pred             HH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCcccCCCCCCHHHHHHhcC
Confidence            96      8999987   589999999999999999999999999999999       99999999999999998764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.3e-30  Score=249.01  Aligned_cols=203  Identities=20%  Similarity=0.217  Sum_probs=163.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcC--CCcccc----ccCCCCCcHHHHHHHc---CCHHHHHHHHHHhcccc--cccccc-
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENN--PMSREA----KLTRSGDTALHIAAAA---GQTNIVSELVEIMGENA--SNVLKI-   70 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~--~~~~~~----~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~--~~~~~~-   70 (523)
                      ..+||.|+..|+.+.++.+++..  .+.+++    ..|..|+||||+|+..   |+.+++++|++.+.+..  ..+++. 
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~   93 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS   93 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred             chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence            36899999999999999998731  133333    4588999999999987   99999999999986311  011333 


Q ss_pred             ---cccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccc
Q 041922           71 ---QNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRD  147 (523)
Q Consensus        71 ---~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh  147 (523)
                         +|..|.||||+|+..|+.+++++|+++|++++..++.+                                  ..   
T Consensus        94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~----------------------------------~~---  136 (273)
T 2pnn_A           94 YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD----------------------------------FF---  136 (273)
T ss_dssp             CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSG----------------------------------GG---
T ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccc----------------------------------cc---
Confidence               67899999999999999999999999998875433211                                  00   


Q ss_pred             cCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHc
Q 041922          148 SRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKM  227 (523)
Q Consensus       148 ~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~  227 (523)
                       ...                                                         .....+..|.||||+|+..
T Consensus       137 -~~~---------------------------------------------------------~~~~~~~~g~tpL~~A~~~  158 (273)
T 2pnn_A          137 -KKT---------------------------------------------------------KGRPGFYFGELPLSLAACT  158 (273)
T ss_dssp             -SSC---------------------------------------------------------SSSCCCCSCBSHHHHHHHT
T ss_pred             -ccc---------------------------------------------------------cccccccCCCCHHHHHHHc
Confidence             000                                                         0023455799999999999


Q ss_pred             ChHHHHHHHHhh--CCCcccccccCCCcHHHHHHHcCc---------hhHHHHHHhccccCCccccccc-------cccC
Q 041922          228 GVTEMVEKILDT--IPVAIHDLDSEKKNLVLLAVENRQ---------TGIYKLLLDRKMLGESDLNIFE-------HVDI  289 (523)
Q Consensus       228 g~~~~v~~Ll~~--~~~~~~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~~~~~~in-------~~d~  289 (523)
                      |+.+++++|++.  .|++++.+|.+|+||||+|+..|+         .+++++|+++|+       ++|       .+|.
T Consensus       159 g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga-------~~n~~~~~~~~~d~  231 (273)
T 2pnn_A          159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA-------KLHPTLKLEEITNR  231 (273)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH-------HHCTTCCGGGCCCT
T ss_pred             CCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh-------hcccccccccccCC
Confidence            999999999993  489999999999999999999988         799999999999       775       5999


Q ss_pred             CCCcHhHHHHHhCCCCCc
Q 041922          290 KGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       290 ~G~TpLH~Aa~~~~~~~~  307 (523)
                      +|+||||+|+..|+.+++
T Consensus       232 ~g~TpL~~A~~~g~~~iv  249 (273)
T 2pnn_A          232 KGLTPLALAASSGKIGVL  249 (273)
T ss_dssp             TSCCHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHhChHHHH
Confidence            999999999999996653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=9.4e-30  Score=236.80  Aligned_cols=186  Identities=24%  Similarity=0.252  Sum_probs=167.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.+++.  +.+.+..|..|.||||+|+..|+.+++++|++.+.    .+++.+|..|.||||+|+
T Consensus        27 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           27 TALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA----TDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT----SCTTCCCTTCCCHHHHHH
T ss_pred             chHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCCcHHHHHH
Confidence            579999999999999999998  67778899999999999999999999999999753    358889999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+++++|+++|+++                                  +.+|..|+||||.|+.            
T Consensus       101 ~~~~~~~~~~Ll~~g~~~----------------------------------~~~~~~g~t~L~~A~~------------  134 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADV----------------------------------NAVDDLGKSALHWAAA------------  134 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCT----------------------------------TCBCTTSCBHHHHHHH------------
T ss_pred             HhCcHHHHHHHHHcCCCC----------------------------------cCcCCCCCcHHHHHHH------------
Confidence            999999999999987654                                  6778899999998762            


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhh
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDT  239 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~  239 (523)
                                                        .+..+++++|+++    +.++..|.||||+|+..|+.+++++|+++
T Consensus       135 ----------------------------------~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          135 ----------------------------------VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             ----------------------------------TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             ----------------------------------cCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence                                              1225688889887    57788999999999999999999999997


Q ss_pred             CCCcccccccCCCcHHHHHHHcCchhHHHHHHhcccc
Q 041922          240 IPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKML  276 (523)
Q Consensus       240 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  276 (523)
                       +++++.+|..|+||||+|+++++.+++++|+++|+.
T Consensus       181 -ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          181 -FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             -TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             -CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence             899999999999999999999999999999999983

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=1.8e-29  Score=230.85  Aligned_cols=186  Identities=20%  Similarity=0.178  Sum_probs=158.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeE
Q 041922           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCS  113 (523)
Q Consensus        34 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l  113 (523)
                      +..+.||||.|+..|+.+.++.|++.+.    .+++.+|.+|.||||+|++.|+.+++++|+++|++++           
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------   66 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTT----YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-----------   66 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----------
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------
Confidence            4578999999999999999999998643    3689999999999999999999999999999988662           


Q ss_pred             eccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcc
Q 041922          114 WSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNAR  193 (523)
Q Consensus       114 ~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  193 (523)
                                                                                                      
T Consensus        67 --------------------------------------------------------------------------------   66 (201)
T 3hra_A           67 --------------------------------------------------------------------------------   66 (201)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhc
Q 041922          194 DETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDR  273 (523)
Q Consensus       194 ~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  273 (523)
                                        .++..|.||||+|+..|+.+++++|++..+.+++..|..|+||||+|+.+|+.+++++|+++
T Consensus        67 ------------------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  128 (201)
T 3hra_A           67 ------------------LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED  128 (201)
T ss_dssp             ------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------------CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence                              23446899999999999999999999887899999999999999999999999999999999


Q ss_pred             c-ccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhh
Q 041922          274 K-MLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTK  351 (523)
Q Consensus       274 ~-~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~  351 (523)
                      | .       +++.+|..|+||||+|+..++...              ...+.++.++..++ ++.+|.+|+||+++|.+
T Consensus       129 g~~-------~~~~~~~~g~t~L~~A~~~~~~~~--------------~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  187 (201)
T 3hra_A          129 GRE-------DIDFQNDFGYTALIEAVGLREGNQ--------------LYQDIVKLLMENGADQSIKDNSGRTAMDYANQ  187 (201)
T ss_dssp             CCC-------CTTCCCTTSCCHHHHHHHSSCCSH--------------HHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCC-------CcCCCCCCCCCHHHHHHHhccchh--------------hHHHHHHHHHHCCCCCCccCCCCCCHHHHHHH
Confidence            9 6       999999999999999999887321              01122333333333 58899999999999987


Q ss_pred             hh
Q 041922          352 TH  353 (523)
Q Consensus       352 ~~  353 (523)
                      ..
T Consensus       188 ~~  189 (201)
T 3hra_A          188 KG  189 (201)
T ss_dssp             HT
T ss_pred             cC
Confidence            64

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.8e-29  Score=225.00  Aligned_cols=169  Identities=18%  Similarity=0.183  Sum_probs=147.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      ..+||.|+..|+.+.++.+++..+ ...+..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A   76 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGD-NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA-----DPHILAKERESALSLA   76 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCS-GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTCCCHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCc-ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CchhhcccCCCHHHHH
Confidence            468999999999999999999853 3367889999999999999999999999999864     4889999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.+++++|+++|+++                                                             
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~-------------------------------------------------------------   95 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVDI-------------------------------------------------------------   95 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCCT-------------------------------------------------------------
T ss_pred             HHCCCHHHHHHHHHcCCCC-------------------------------------------------------------
Confidence            9999999999999998765                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +.+|..|.||||+|+..|+.+++++|++. |+
T Consensus        96 ------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga  126 (172)
T 3v30_A           96 ------------------------------------------------NIYDWNGGTPLLYAVRGNHVKCVEALLAR-GA  126 (172)
T ss_dssp             ------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ------------------------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence                                                            22445689999999999999999999997 89


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcH
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSA  294 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~Tp  294 (523)
                      +++.+|.+|+||||+|+.+|+.+++++|+++++       ++..++..|.||
T Consensus       127 ~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~-------~~~~~~~~~~~p  171 (172)
T 3v30_A          127 DLTTEADSGYTPMDLAVALGYRKVQQVIENHIL-------KLFQSNLVPADP  171 (172)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH-------HHSCC-------
T ss_pred             CccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH-------HHhcccCCCCCC
Confidence            999999999999999999999999999999999       888999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=9.2e-30  Score=231.29  Aligned_cols=157  Identities=22%  Similarity=0.238  Sum_probs=143.6

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCC
Q 041922           29 REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEG  108 (523)
Q Consensus        29 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  108 (523)
                      ..+.+|..|+||||+|+..|+.+++++|++.+.     +++.+|..|+||||+|+..|+.+++++|++.|+++       
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------   94 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFD-----KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-------   94 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-------
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc-----ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-------
Confidence            456789999999999999999999999999874     48899999999999999999999999999998765       


Q ss_pred             CceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhcc
Q 041922          109 LANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNK  188 (523)
Q Consensus       109 ~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (523)
                                                                                                      
T Consensus        95 --------------------------------------------------------------------------------   94 (192)
T 2rfm_A           95 --------------------------------------------------------------------------------   94 (192)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHH
Q 041922          189 DGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYK  268 (523)
Q Consensus       189 ~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~  268 (523)
                                            +.+|..|.||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+.+|+.++++
T Consensus        95 ----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~  151 (192)
T 2rfm_A           95 ----------------------NTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVK  151 (192)
T ss_dssp             ----------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ----------------------CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence                                  22345689999999999999999999997 8999999999999999999999999999


Q ss_pred             HHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          269 LLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       269 ~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      +|+++|+       +++.+|.+|+||||+|+..|+.+++
T Consensus       152 ~Ll~~ga-------~~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          152 KLLELGA-------DISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHHTTC-------CTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHCCC-------CCCCcCCCCCCHHHHHHHhCcHHHH
Confidence            9999999       9999999999999999999986543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2e-30  Score=249.76  Aligned_cols=188  Identities=16%  Similarity=0.183  Sum_probs=161.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCc-ccccccCCCCcee
Q 041922           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDR-ELISAADEGLANC  112 (523)
Q Consensus        34 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~-~~~~~~~~~~~l~  112 (523)
                      +..+.+++|.|+..|+.+.++.+++.+.+   ..+|.+|.+|+||||+|+..|+.+++++|++.|+ ++           
T Consensus        73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~---~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-----------  138 (276)
T 4hbd_A           73 RLACRSDAHPELVRRHLVTFRAMSARLLD---YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-----------  138 (276)
T ss_dssp             HHHHSTTCCHHHHHHHHHHHHHHCHHHHH---HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-----------
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHh---hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-----------
Confidence            33467889999999999999999887653   4588999999999999999999999999999998 55           


Q ss_pred             EeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCc
Q 041922          113 SWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNA  192 (523)
Q Consensus       113 l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (523)
                                             +..|..|.||||.|+..                                        
T Consensus       139 -----------------------~~~~~~g~tpL~~a~~~----------------------------------------  155 (276)
T 4hbd_A          139 -----------------------DKQNRAGYSPIMLTALA----------------------------------------  155 (276)
T ss_dssp             -----------------------TCCCTTSCCHHHHGGGC----------------------------------------
T ss_pred             -----------------------CCCCCCCCCHHHHHHHH----------------------------------------
Confidence                                   56788899999977621                                        


Q ss_pred             chhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHH
Q 041922          193 RDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYK  268 (523)
Q Consensus       193 ~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~  268 (523)
                       ........++++.|++.    +..+..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+.+|+.++++
T Consensus       156 -~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 -TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             -CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             -HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence             01123456688888877    45567899999999999999999999997 9999999999999999999999999999


Q ss_pred             HHHh-ccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          269 LLLD-RKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       269 ~Ll~-~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      +|++ .|+       +++.+|.+|+||||+|+..|+.+++
T Consensus       234 ~Ll~~~ga-------d~~~~d~~g~TpL~~A~~~g~~~iv  266 (276)
T 4hbd_A          234 LLLAVPSC-------DISLTDRDGSTALMVALDAGQSEIA  266 (276)
T ss_dssp             HHHTSTTC-------CTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHhcCCC-------CCcCcCCCCCCHHHHHHHcCCHHHH
Confidence            9999 888       9999999999999999999996653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.3e-29  Score=243.76  Aligned_cols=206  Identities=17%  Similarity=0.117  Sum_probs=156.7

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHHhccccccccc----ccccCCChHHhHHHHc---CCHHHHHHHHhcCccc
Q 041922           29 REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK----IQNDRGDTALHLAAAL---GNEAMCHCMASKDREL  101 (523)
Q Consensus        29 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~----~~d~~G~TpLh~A~~~---g~~~iv~~Ll~~~~~~  101 (523)
                      ..+..|..|+||||.|+..|+.++|+.|++.+.+.. ..++    .+|..|+||||+|+..   |+.+++++|++.|++.
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK-KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC-CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc-cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            345678999999999999999999999999765322 2233    4688999999999987   9999999999998764


Q ss_pred             ccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHH
Q 041922          102 ISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLES  181 (523)
Q Consensus       102 ~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  181 (523)
                      ..                                                                              
T Consensus        84 ~~------------------------------------------------------------------------------   85 (273)
T 2pnn_A           84 DS------------------------------------------------------------------------------   85 (273)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            21                                                                              


Q ss_pred             HHHhhccCCCcchhhhhHHHHHHHHHHhc--ccccCCCChHHHHHHHcChHHHHHHHHhhCCCccccccc----------
Q 041922          182 AVAVHNKDGNARDETATAAVQELKFMKKK--DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDS----------  249 (523)
Q Consensus       182 ~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~--~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~----------  249 (523)
                                            ++.+++.  ...|..|.||||+|+..|+.+++++|++. |++++.+|.          
T Consensus        86 ----------------------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~  142 (273)
T 2pnn_A           86 ----------------------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGR  142 (273)
T ss_dssp             ----------------------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSS
T ss_pred             ----------------------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCcccccccccccccc
Confidence                                  0111111  22455799999999999999999999997 899999997          


Q ss_pred             ----CCCcHHHHHHHcCchhHHHHHHh---ccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHH
Q 041922          250 ----EKKNLVLLAVENRQTGIYKLLLD---RKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKW  322 (523)
Q Consensus       250 ----~G~t~Lh~A~~~~~~~iv~~Ll~---~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~  322 (523)
                          .|+||||+|+.+|+.+++++|++   +|+       ++|.+|.+|+||||+|+..++...-     ....     .
T Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga-------d~~~~d~~g~tpLh~A~~~~~~~~~-----~~~~-----~  205 (273)
T 2pnn_A          143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA-------DISARDSVGNTVLHALVEVADNTVD-----NTKF-----V  205 (273)
T ss_dssp             CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC-------CTTCCCTTSCCHHHHHHHHCCSCHH-----HHHH-----H
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC-------CceeeCCCCCcHHHHHHHccCcchh-----HHHH-----H
Confidence                89999999999999999999999   888       9999999999999999998873210     0000     0


Q ss_pred             HHHHHhhCCccc--------ccccCCCCCChhHHhhhhh
Q 041922          323 YKFVKESMPRYF--------FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       323 ~~~v~~~~~~~~--------~~~~n~~G~Tpl~la~~~~  353 (523)
                      .+.++.++..+.        .+.+|.+|+||+++|.+..
T Consensus       206 ~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g  244 (273)
T 2pnn_A          206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG  244 (273)
T ss_dssp             HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhC
Confidence            111222222222        2468999999999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=3.6e-29  Score=238.21  Aligned_cols=197  Identities=16%  Similarity=0.130  Sum_probs=151.5

Q ss_pred             CCCcHHHHHHHcCCHHHH----HHHHHHhcccccccccc----cccCCChHHhHHHHc---CCHHHHHHHHhcCcccccc
Q 041922           36 SGDTALHIAAAAGQTNIV----SELVEIMGENASNVLKI----QNDRGDTALHLAAAL---GNEAMCHCMASKDRELISA  104 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v----~~Ll~~~~~~~~~~~~~----~d~~G~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~  104 (523)
                      .|+||||.|+..|+.+.+    ++|++.+     .+++.    +|.+|+||||+|+..   |+.+++++|++.|++++..
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g-----~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   75 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS-----KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNP   75 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHT-----CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcC-----CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccch
Confidence            388999999999999855    5555554     35777    899999999999999   9999999999998876321


Q ss_pred             cCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHH
Q 041922          105 ADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVA  184 (523)
Q Consensus       105 ~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  184 (523)
                      +.                  +         ++.           ..                                  
T Consensus        76 ~~------------------~---------~~~-----------~~----------------------------------   83 (256)
T 2etb_A           76 KP------------------L---------VNA-----------QC----------------------------------   83 (256)
T ss_dssp             SC------------------G---------GGC-----------CC----------------------------------
T ss_pred             hh------------------h---------ccc-----------cc----------------------------------
Confidence            10                  0         000           00                                  


Q ss_pred             hhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccC-------------C
Q 041922          185 VHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSE-------------K  251 (523)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-------------G  251 (523)
                                                ..+|..|.||||+|+..|+.+++++|++. |++++..|..             |
T Consensus        84 --------------------------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           84 --------------------------TDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             --------------------------CSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSC
T ss_pred             --------------------------ccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccCC
Confidence                                      12345799999999999999999999997 8999999986             9


Q ss_pred             CcHHHHHHHcCchhHHHHHHh---ccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHh
Q 041922          252 KNLVLLAVENRQTGIYKLLLD---RKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKE  328 (523)
Q Consensus       252 ~t~Lh~A~~~~~~~iv~~Ll~---~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~  328 (523)
                      +||||+|+.+|+.+++++|++   +|+       ++|.+|.+|+||||+|+..++...     .....     ..+.++.
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga-------~~n~~d~~g~TpLh~A~~~~~~~~-----~~~~~-----~~~iv~~  199 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPA-------SLEATDSLGNTVLHALVMIADNSP-----ENSAL-----VIHMYDG  199 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCC-------CTTCCCTTSCCHHHHHHHHCCSCH-----HHHHH-----HHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCC-------CcCccCCCCCCHHHHHHHcccCCc-----hhhHH-----HHHHHHH
Confidence            999999999999999999999   898       999999999999999999543211     00000     0011222


Q ss_pred             hCCccc-c-------cccCCCCCChhHHhhhhh
Q 041922          329 SMPRYF-F-------LGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       329 ~~~~~~-~-------~~~n~~G~Tpl~la~~~~  353 (523)
                      ++..++ +       +.+|.+|+||+++|.+..
T Consensus       200 Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  232 (256)
T 2etb_A          200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG  232 (256)
T ss_dssp             HHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHHcCCCcccccccccccCCCCCCHHHHHHHhC
Confidence            222222 3       789999999999999864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=8.2e-29  Score=220.75  Aligned_cols=150  Identities=21%  Similarity=0.237  Sum_probs=136.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEecc
Q 041922           37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSS  116 (523)
Q Consensus        37 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~  116 (523)
                      +.||||.|+..|+.++++.|++.+.    ..++.+|..|+||||+|+..|+.+++++|+++|++++              
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------------   63 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGD----NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH--------------   63 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCS----GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT--------------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCc----ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch--------------
Confidence            5799999999999999999998753    4589999999999999999999999999999987662              


Q ss_pred             CCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhh
Q 041922          117 GNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDET  196 (523)
Q Consensus       117 ~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  196 (523)
                                                                                                      
T Consensus        64 --------------------------------------------------------------------------------   63 (172)
T 3v30_A           64 --------------------------------------------------------------------------------   63 (172)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcccc
Q 041922          197 ATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKML  276 (523)
Q Consensus       197 ~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  276 (523)
                                     ..+..|.||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+.+|+.+++++|+++|+ 
T Consensus        64 ---------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-  126 (172)
T 3v30_A           64 ---------------ILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA-  126 (172)
T ss_dssp             ---------------CCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred             ---------------hhcccCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-
Confidence                           2344689999999999999999999997 89999999999999999999999999999999999 


Q ss_pred             CCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          277 GESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       277 ~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                            +++.+|.+|+||||+|+..++.+++
T Consensus       127 ------~~~~~~~~g~t~l~~A~~~~~~~~~  151 (172)
T 3v30_A          127 ------DLTTEADSGYTPMDLAVALGYRKVQ  151 (172)
T ss_dssp             ------CTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             ------CccccCCCCCCHHHHHHHhCcHHHH
Confidence                  9999999999999999999986543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=5.8e-30  Score=239.24  Aligned_cols=194  Identities=15%  Similarity=0.047  Sum_probs=156.6

Q ss_pred             HHHHHcCCCc-cccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhc
Q 041922           19 VQAYENNPMS-REAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASK   97 (523)
Q Consensus        19 ~~ll~~~~~~-~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~   97 (523)
                      +.++++.... ..+..+.+|.||||+|+..|+.+++++|++.+.     +++.+|..|+||||+|+..|+.+++++|++.
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   76 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-----DPSQPNEEGITALHNAICGANYSIVDFLITA   76 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            4566653221 133456677899999999999999999999864     5899999999999999999999999999999


Q ss_pred             CcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhH
Q 041922           98 DRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNI  177 (523)
Q Consensus        98 ~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~  177 (523)
                      |+++                                                                            
T Consensus        77 ga~~----------------------------------------------------------------------------   80 (229)
T 2vge_A           77 GANV----------------------------------------------------------------------------   80 (229)
T ss_dssp             TCCT----------------------------------------------------------------------------
T ss_pred             CCCC----------------------------------------------------------------------------
Confidence            8776                                                                            


Q ss_pred             HHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccc-cCCCcHHH
Q 041922          178 CLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLD-SEKKNLVL  256 (523)
Q Consensus       178 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh  256 (523)
                                                       +.+|..|.||||+|+..|+.+++++|++. |++++..| .+|+||||
T Consensus        81 ---------------------------------n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~  126 (229)
T 2vge_A           81 ---------------------------------NSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFE  126 (229)
T ss_dssp             ---------------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGG
T ss_pred             ---------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHH
Confidence                                             23445689999999999999999999997 89999987 69999999


Q ss_pred             HH--HHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc
Q 041922          257 LA--VENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF  334 (523)
Q Consensus       257 ~A--~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~  334 (523)
                      +|  +..|+.+++++|+++|+       +++.+|..|.||+|.++.....+.+...|+.+.                   
T Consensus       127 ~A~a~~~~~~~~v~~Ll~~ga-------~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~-------------------  180 (229)
T 2vge_A          127 KCDPYREGYADCATYLADVEQ-------SMGLMNSGAVYALWDYSAEFGDELSFREGESVT-------------------  180 (229)
T ss_dssp             GCCTTSTTHHHHHHHHHHHHH-------HTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEE-------------------
T ss_pred             HHHHHhcChHHHHHHHHHcCC-------CcccccCCchHHHHHHhhccccccCcccccccc-------------------
Confidence            99  99999999999999999       999999999999997766655444433333321                   


Q ss_pred             ccccCCCCCChhHHhhhhh
Q 041922          335 FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       335 ~~~~n~~G~Tpl~la~~~~  353 (523)
                      ++.+|.+|+||+++|....
T Consensus       181 ~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          181 VLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             EEESSCTTCSSEEEEEETT
T ss_pred             ccccCCCcccHHHHHHHcC
Confidence            3788999999999998764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.3e-28  Score=218.25  Aligned_cols=150  Identities=22%  Similarity=0.265  Sum_probs=127.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEec
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWS  115 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~  115 (523)
                      .|.||||.|+..|+.+++++|++.+     .+++.+|..|.||||+|+..|+.+++++|++.|++++             
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------------   63 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE-----NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-------------   63 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS-----SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC-----CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-------------
Confidence            5789999999999999999999875     3488889999999999999999999999998877652             


Q ss_pred             cCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchh
Q 041922          116 SGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDE  195 (523)
Q Consensus       116 ~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (523)
                                                                                                      
T Consensus        64 --------------------------------------------------------------------------------   63 (167)
T 3v31_A           64 --------------------------------------------------------------------------------   63 (167)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          196 TATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       196 ~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                                      ..+..|.||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+.+|+.+++++|+++|+
T Consensus        64 ----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  126 (167)
T 3v31_A           64 ----------------LLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA  126 (167)
T ss_dssp             ----------------CCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ----------------CcCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                            2334578889999999999999999987 78888889999999999999999999999999888


Q ss_pred             cCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          276 LGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       276 ~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                             +++.+|.+|+||||+|+..|+.+++
T Consensus       127 -------~~~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A          127 -------DPTIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             -------CTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             -------CCCCcCCCCCCHHHHHHHcCcHHHH
Confidence                   8888899999999999988886543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.3e-27  Score=212.34  Aligned_cols=82  Identities=24%  Similarity=0.275  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHh
Q 041922          216 RKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSAL  295 (523)
Q Consensus       216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpL  295 (523)
                      .|.||||+|+..|+.+++++|++. +++++..|.+|+||||+|+.+|+.+++++|+++|+       +++.+|..|+|||
T Consensus        79 ~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------~~~~~~~~g~t~l  150 (169)
T 2y1l_E           79 AGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-------DVNAQDKFGKTAF  150 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCCCcCCCCCCHH
Confidence            345555555555555555555554 45555555555555555555555555555555555       5555555555555


Q ss_pred             HHHHHhCCCC
Q 041922          296 HLAAKFGEYG  305 (523)
Q Consensus       296 H~Aa~~~~~~  305 (523)
                      |+|+..++.+
T Consensus       151 ~~A~~~~~~~  160 (169)
T 2y1l_E          151 DISIDNGNED  160 (169)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHhCCHH
Confidence            5555555433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=5.2e-28  Score=213.16  Aligned_cols=156  Identities=18%  Similarity=0.193  Sum_probs=136.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      +++|+.|+..|+.+.++.+++.  +.+++..|..|+||||+|+. |+.+++++|++.+.     +++.+|..|.||||+|
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA-----NPDLKDRTGFAVIHDA   77 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCC-----CCCCCCCCCCCHHHHH
Confidence            5789999999999999999987  56778889999999999999 99999999998763     4888999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      ++.|+.+++++|+++|+++                                                             
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~-------------------------------------------------------------   96 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADV-------------------------------------------------------------   96 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-------------------------------------------------------------
T ss_pred             HHcCCHHHHHHHHHcCCCC-------------------------------------------------------------
Confidence            9999999999999988765                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +.+|..|.||||+|+..|+.+++++|++....
T Consensus        97 ------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           97 ------------------------------------------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             ------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             ------------------------------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence                                                            22445689999999999999999999998444


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      .++..|.+|+||||+|+.+|+.+++++|+++|+
T Consensus       129 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          129 NVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            479999999999999999999999999999987

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=6.3e-29  Score=240.46  Aligned_cols=200  Identities=18%  Similarity=0.089  Sum_probs=174.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.+++.  +.+++..  +|+||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+
T Consensus        33 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~d~~g~t~L~~A~  103 (285)
T 3kea_A           33 SASYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGL-----DDSQFDDKGNTALYYAV  103 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT--TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTC-----CTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhC--CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCcCCCCCcHHHHHH
Confidence            589999999999999999998  6666665  59999999999999999999999864     58999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCC-CCccccCCCCCCCCccCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHG-KSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g-~tpLh~a~~~~~~~~~~l~~  162 (523)
                      ..|+.+++++|+++|+++                                  +.+|..| .||||.|+.           
T Consensus       104 ~~g~~~~v~~Ll~~ga~~----------------------------------~~~~~~g~~t~L~~A~~-----------  138 (285)
T 3kea_A          104 DSGNMQTVKLFVKKNWRL----------------------------------MFYGKTGWKTSFYHAVM-----------  138 (285)
T ss_dssp             HTTCHHHHHHHHHHCGGG----------------------------------GGCSSSGGGSHHHHHHH-----------
T ss_pred             HcCCHHHHHHHHhcCCCC----------------------------------CccCCCCCCCHHHHHHH-----------
Confidence            999999999999998765                                  5677888 799998762           


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc--ccccC-CCChHHHHHHHcChHHHHHHHHhh
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK--DQQSG-RKATPILIAAKMGVTEMVEKILDT  239 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~--~~~~~-~g~tpLh~Aa~~g~~~~v~~Ll~~  239 (523)
                                                         .+..+++++|+++  +..+. .|.||||+|+..|+.+++++|+++
T Consensus       139 -----------------------------------~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  183 (285)
T 3kea_A          139 -----------------------------------LNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY  183 (285)
T ss_dssp             -----------------------------------TTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----------------------------------cCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence                                               1235689999988  33333 799999999999999999999998


Q ss_pred             CCCcccccccCCCcH-HHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          240 IPVAIHDLDSEKKNL-VLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       240 ~~~~~~~~d~~G~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                       |++++.+|..|+|| ||+|+.+|+.+++++|+++|+       +++.+|.       .|+..++.+++
T Consensus       184 -gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga-------d~~~~~~-------~a~~~~~~~iv  237 (285)
T 3kea_A          184 -MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-------NIYSANL-------ENVLLDDAEIA  237 (285)
T ss_dssp             -HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB-------CSTTTTG-------GGGTTTCHHHH
T ss_pred             -CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC-------CCCCCCh-------hhhhcCCHHHH
Confidence             89999999999998 999999999999999999999       8888884       45566666554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=3.4e-28  Score=212.43  Aligned_cols=147  Identities=22%  Similarity=0.217  Sum_probs=118.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEecc
Q 041922           37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSS  116 (523)
Q Consensus        37 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~  116 (523)
                      ..||||.|+..|+.+++++|++.+.+     ++ .|..|.||||+|+..|+.+++++|++.|+++               
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~-----~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------------   60 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAP-----FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---------------   60 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC-----CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCC-----CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---------------
Confidence            45788888888888888888887642     33 5778888888888888888888888877655               


Q ss_pred             CCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhh
Q 041922          117 GNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDET  196 (523)
Q Consensus       117 ~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  196 (523)
                                                                                                      
T Consensus        61 --------------------------------------------------------------------------------   60 (153)
T 1awc_B           61 --------------------------------------------------------------------------------   60 (153)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcccc
Q 041922          197 ATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKML  276 (523)
Q Consensus       197 ~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  276 (523)
                                    +.++..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+.+|+.+++++|+++|+ 
T Consensus        61 --------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-  124 (153)
T 1awc_B           61 --------------DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA-  124 (153)
T ss_dssp             --------------TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred             --------------CCCCCCCCCHHHHHHHcChHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-
Confidence                          22344578888888888888888888886 78888888888888888888888888888888888 


Q ss_pred             CCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          277 GESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       277 ~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                            +++.+|.+|+||||+|+..|+.++
T Consensus       125 ------~~~~~~~~g~t~l~~A~~~~~~~i  148 (153)
T 1awc_B          125 ------DVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             ------CTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ------CccccCCCCCCHHHHHHHcCCHHH
Confidence                  888888888888888888887543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=4.5e-28  Score=215.36  Aligned_cols=155  Identities=23%  Similarity=0.264  Sum_probs=136.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      ..+++.|+..|+.+.++.+++.  +.+++.+|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-----DVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHH
T ss_pred             cchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCccCCCCCCHHHHH
Confidence            3578889999999999988888  66778888899999999999999999999998753     4788888999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.+++++|+++|+++                                                             
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~-------------------------------------------------------------  106 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADV-------------------------------------------------------------  106 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-------------------------------------------------------------
T ss_pred             HHcCCHHHHHHHHHcCCCC-------------------------------------------------------------
Confidence            9999999999999888765                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +.+|..|.||||+|+..|+.+++++|+++ |+
T Consensus       107 ------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~  137 (169)
T 2y1l_E          107 ------------------------------------------------NANDMEGHTPLHLAAMFGHLEIVEVLLKN-GA  137 (169)
T ss_dssp             ------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ------------------------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence                                                            23455799999999999999999999997 89


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHHHhcc
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRK  274 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  274 (523)
                      +++.+|.+|+||||+|+.+|+.+++++|++.|
T Consensus       138 ~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999999876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1e-27  Score=215.21  Aligned_cols=165  Identities=15%  Similarity=0.135  Sum_probs=145.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      ++|+.|+..|+.+.++.+++.. +.+++..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+
T Consensus         7 ~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            7 DDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-----RINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHH
Confidence            5789999999999999999875 35677889999999999999999999999998763     48889999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+++++|+++|+++                                                              
T Consensus        81 ~~~~~~~v~~Ll~~g~~~--------------------------------------------------------------   98 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADI--------------------------------------------------------------   98 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCT--------------------------------------------------------------
T ss_pred             HcCCHHHHHHHHHcCCCC--------------------------------------------------------------
Confidence            999999999999988765                                                              


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCc
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVA  243 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  243 (523)
                                                                     +.+|..|.||||+|+..|+.+++++|+++ |++
T Consensus        99 -----------------------------------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~  130 (179)
T 3f6q_A           99 -----------------------------------------------NAVNEHGNVPLHYACFWGQDQVAEDLVAN-GAL  130 (179)
T ss_dssp             -----------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             -----------------------------------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence                                                           23445689999999999999999999997 899


Q ss_pred             ccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCC
Q 041922          244 IHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKG  291 (523)
Q Consensus       244 ~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G  291 (523)
                      ++.+|.+|+||||+|+..++.+++++|+++|+       +++..+.++
T Consensus       131 ~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~-------~~~~~~~~~  171 (179)
T 3f6q_A          131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQ-------NLNRIPYKD  171 (179)
T ss_dssp             SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC-------CCSCBCCCC
T ss_pred             cchhccCCCCcHHHHHHHHHHHHHHHHHHhhc-------CcccCCccc
Confidence            99999999999999999999999999999999       777776654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=2.1e-27  Score=210.54  Aligned_cols=156  Identities=18%  Similarity=0.163  Sum_probs=143.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      ..+||.|+..|+.+.++.+++.  +.+++..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A   76 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA-----DPQLLGKGRESALSLA   76 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHH
T ss_pred             cchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC-----CCCCcCCCCCcHHHHH
Confidence            3579999999999999999998  56678899999999999999999999999999864     5889999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.+++++|+++|+++                                                             
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~-------------------------------------------------------------   95 (167)
T 3v31_A           77 CSKGYTDIVKMLLDCGVDV-------------------------------------------------------------   95 (167)
T ss_dssp             HHHTCHHHHHHHHHHTCCT-------------------------------------------------------------
T ss_pred             HHcCCHHHHHHHHHCCCCC-------------------------------------------------------------
Confidence            9999999999999998766                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +.+|..|.||||+|+..|+.+++++|++. |+
T Consensus        96 ------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~  126 (167)
T 3v31_A           96 ------------------------------------------------NEYDWNGGTPLLYAVHGNHVKCVKMLLES-GA  126 (167)
T ss_dssp             ------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ------------------------------------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence                                                            22445689999999999999999999996 89


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      +++.+|.+|+||||+|+.+|+.+++++|++++.
T Consensus       127 ~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          127 DPTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.7e-27  Score=207.21  Aligned_cols=153  Identities=23%  Similarity=0.293  Sum_probs=124.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      +++|+.|+..|+.+.++.+++. .+.+.+..|..|.||||+ +..|+.+++++|++.|.     +++.+|..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A   75 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGA-----SPNVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC-----CCCCcCCCCCCHHHHH
Confidence            5678888888888888888887 455677788888888888 88888888888888753     4788888888888888


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.+++++|+++|+++                                                             
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~-------------------------------------------------------------   94 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGADV-------------------------------------------------------------   94 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCS-------------------------------------------------------------
T ss_pred             HHcCcHHHHHHHHHcCCCC-------------------------------------------------------------
Confidence            8888888888888887655                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +.+|..|.||||+|+..|+.+++++|++.  +
T Consensus        95 ------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~  124 (156)
T 1bd8_A           95 ------------------------------------------------NVPDGTGALPIHLAVQEGHTAVVSFLAAE--S  124 (156)
T ss_dssp             ------------------------------------------------CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--S
T ss_pred             ------------------------------------------------CCcCCCCCcHHHHHHHhChHHHHHHHHhc--c
Confidence                                                            22344578888888888888888888886  7


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHHHhc
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLLLDR  273 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  273 (523)
                      +++.+|.+|+||||+|+.+|+.+++++|+++
T Consensus       125 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          125 DLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8888888888888888888888888888764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=4.7e-27  Score=205.14  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=136.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      +++|+.|+..|+.+.++.+++..+  +.+ .+..|.||||+|+..|+.+++++|++.+.     +++.+|..|+||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A   74 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-----SRDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-----CTTCCCTTCCCHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCC--CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHH
Confidence            578999999999999999999854  443 58899999999999999999999998763     4889999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.+++++|+++|+++                                                             
T Consensus        75 ~~~~~~~~v~~Ll~~g~~~-------------------------------------------------------------   93 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGADV-------------------------------------------------------------   93 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCT-------------------------------------------------------------
T ss_pred             HHcChHHHHHHHHHcCCCC-------------------------------------------------------------
Confidence            9999999999999998766                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +.+|..|.||||+|+..|+.+++++|++. |+
T Consensus        94 ------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga  124 (153)
T 1awc_B           94 ------------------------------------------------NAKDMLKMTALHWATEHNHQEVVELLIKY-GA  124 (153)
T ss_dssp             ------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ------------------------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence                                                            22445689999999999999999999997 89


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHH
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLL  270 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~L  270 (523)
                      +++.+|.+|+||||+|+.+|+.+++++|
T Consensus       125 ~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          125 DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999987

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=2.2e-28  Score=233.20  Aligned_cols=201  Identities=16%  Similarity=0.130  Sum_probs=152.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccc----cCCChHHhHHH---HcCCHHHHHHHHhcCcccccccC
Q 041922           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN----DRGDTALHLAA---ALGNEAMCHCMASKDRELISAAD  106 (523)
Q Consensus        34 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d----~~G~TpLh~A~---~~g~~~iv~~Ll~~~~~~~~~~~  106 (523)
                      +..|+|+||.|++.|+.+.++.|++..... ...++.++    .+|+||||+|+   +.|+.+++++|++.|++....  
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~--   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM--   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH--
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch--
Confidence            567899999999999999766666622110 12355554    77999999999   779999999999998764210  


Q ss_pred             CCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhh
Q 041922          107 EGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVH  186 (523)
Q Consensus       107 ~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (523)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (260)
T 3jxi_A           79 --------------------------------------------------------------------------------   78 (260)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCcchhhhhHHHHHHHHHHhc--ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccc--------------cC
Q 041922          187 NKDGNARDETATAAVQELKFMKKK--DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLD--------------SE  250 (523)
Q Consensus       187 ~~~~~~~~~~~~~~~~~v~~Ll~~--~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~  250 (523)
                                        ..++..  +..|..|.||||+|+..|+.+++++|++. |++++..|              .+
T Consensus        79 ------------------~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~  139 (260)
T 3jxi_A           79 ------------------REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYF  139 (260)
T ss_dssp             ------------------HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCS
T ss_pred             ------------------HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccC
Confidence                              000111  23445799999999999999999999997 89999998              68


Q ss_pred             CCcHHHHHHHcCchhHHHHHHh---ccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHH
Q 041922          251 KKNLVLLAVENRQTGIYKLLLD---RKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVK  327 (523)
Q Consensus       251 G~t~Lh~A~~~~~~~iv~~Ll~---~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~  327 (523)
                      |+||||+|+.+|+.+++++|++   +|+       ++|.+|.+|+||||+|+..++...-     ....     ..+.++
T Consensus       140 g~tpL~~A~~~g~~~~v~~Ll~~~~~ga-------~~~~~d~~g~TpLh~A~~~~~~~~~-----~~~~-----~~~~v~  202 (260)
T 3jxi_A          140 GELPLSLAACTNQPHIVHYLTENGHKQA-------DLRRQDSRGNTVLHALVAIADNTRE-----NTKF-----VTKMYD  202 (260)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCC-------CTTCCCTTSCCHHHHHHHHCCSSHH-----HHHH-----HHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCC-------CCcccCCCCCcHHHHHHHhccCchh-----HHHH-----HHHHHH
Confidence            9999999999999999999999   888       9999999999999999998873210     0000     011222


Q ss_pred             hhCCccc--------ccccCCCCCChhHHhhhhh
Q 041922          328 ESMPRYF--------FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       328 ~~~~~~~--------~~~~n~~G~Tpl~la~~~~  353 (523)
                      .++..++        .+.+|.+|+||+++|.+..
T Consensus       203 ~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             HHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence            2222222        2679999999999999764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=5.9e-28  Score=212.85  Aligned_cols=151  Identities=21%  Similarity=0.242  Sum_probs=135.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEe
Q 041922           35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSW  114 (523)
Q Consensus        35 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~  114 (523)
                      ....||||.|+..|+.+++++|++.+     .+++.+|..|+||||+|+. |+.+++++|+++|+++             
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~-----~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-------------   63 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNN-----VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-------------   63 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSC-----CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-------------
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCC-----CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-------------
Confidence            35679999999999999999999865     3588999999999999999 9999999999998765             


Q ss_pred             ccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcch
Q 041922          115 SSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARD  194 (523)
Q Consensus       115 ~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (523)
                                                                                                      
T Consensus        64 --------------------------------------------------------------------------------   63 (162)
T 1ihb_A           64 --------------------------------------------------------------------------------   63 (162)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcc
Q 041922          195 ETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRK  274 (523)
Q Consensus       195 ~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  274 (523)
                                      +.++..|.||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+.+|+.+++++|+++|
T Consensus        64 ----------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  126 (162)
T 1ihb_A           64 ----------------DLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  126 (162)
T ss_dssp             ----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ----------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc
Confidence                            22345689999999999999999999997 8999999999999999999999999999999999


Q ss_pred             ccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          275 MLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       275 ~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      +.      .++.+|..|+||||+|+..++.+++
T Consensus       127 ~~------~~~~~~~~g~t~l~~A~~~~~~~~~  153 (162)
T 1ihb_A          127 AS------NVGHRNHKGDTACDLARLYGRNEVV  153 (162)
T ss_dssp             CC------CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CC------CCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            82      4799999999999999999986543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=5.6e-27  Score=212.84  Aligned_cols=155  Identities=19%  Similarity=0.220  Sum_probs=142.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.+++.  +.+++..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+
T Consensus        37 t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           37 TPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS-----NVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCcHHHHHH
Confidence            589999999999999999998  56778889999999999999999999999999864     48999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+++++|+++|+++                                                              
T Consensus       110 ~~~~~~~v~~Ll~~g~~~--------------------------------------------------------------  127 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANV--------------------------------------------------------------  127 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCS--------------------------------------------------------------
T ss_pred             HcCCHHHHHHHHHCCCCC--------------------------------------------------------------
Confidence            999999999999998766                                                              


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCc
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVA  243 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  243 (523)
                                                                     +.+|..|.||||+|+..|+.+++++|++. |++
T Consensus       128 -----------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~  159 (192)
T 2rfm_A          128 -----------------------------------------------NDRNLEGETPLIVASKYGRSEIVKKLLEL-GAD  159 (192)
T ss_dssp             -----------------------------------------------SCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCC
T ss_pred             -----------------------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence                                                           22445689999999999999999999997 899


Q ss_pred             ccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          244 IHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       244 ~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      ++.+|.+|+||||+|+.+|+.+++++|++++.
T Consensus       160 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          160 ISARDLTGLTAEASARIFGRQEVIKIFTEVRR  191 (192)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHhCcHHHHHHHHhccC
Confidence            99999999999999999999999999998763

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.4e-29  Score=235.04  Aligned_cols=180  Identities=18%  Similarity=0.156  Sum_probs=154.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.|+..|+.+.++.+++.  +.+++.+|..|.||||+|+..|+.+++++|++.|.     +++.+|..|+||||+|+
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-----~~n~~d~~g~tpLh~A~   95 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGA-----NVNSPDSHGWTPLHCAA   95 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHH
Confidence            468999999999999999998  66788899999999999999999999999999864     59999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+++++|+++|++++.                                  +|                        
T Consensus        96 ~~g~~~~v~~Ll~~ga~~~~----------------------------------~~------------------------  117 (229)
T 2vge_A           96 SCNDTVICMALVQHGAAIFA----------------------------------TT------------------------  117 (229)
T ss_dssp             HTTCHHHHHHHHTTTCCTTC----------------------------------CC------------------------
T ss_pred             HcCCHHHHHHHHHcCCCccc----------------------------------cc------------------------
Confidence            99999999999999877632                                  21                        


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHH--HHcChHHHHHHHHhhCC
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIA--AKMGVTEMVEKILDTIP  241 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~A--a~~g~~~~v~~Ll~~~~  241 (523)
                                                                        +.+|.||||+|  +..|+.+++++|++. |
T Consensus       118 --------------------------------------------------~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-g  146 (229)
T 2vge_A          118 --------------------------------------------------LSDGATAFEKCDPYREGYADCATYLADV-E  146 (229)
T ss_dssp             --------------------------------------------------SSTTCCTGGGCCTTSTTHHHHHHHHHHH-H
T ss_pred             --------------------------------------------------CCCCCCHHHHHHHHhcChHHHHHHHHHc-C
Confidence                                                              12466666666  778999999999998 8


Q ss_pred             CcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          242 VAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       242 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      ++++..|..|.|++|.++..+.   .++|++.|+..     +++.+|.+|+||||+|+..|+.+++
T Consensus       147 a~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~-----~~~~~d~~G~TpL~~A~~~g~~~~v  204 (229)
T 2vge_A          147 QSMGLMNSGAVYALWDYSAEFG---DELSFREGESV-----TVLRRDGPEETDWWWAALHGQEGYV  204 (229)
T ss_dssp             HHTTTSGGGEEEESSCBCCSST---TBCCBCTTCEE-----EEEESSCTTCSSEEEEEETTEEEEE
T ss_pred             CCcccccCCchHHHHHHhhccc---cccCccccccc-----cccccCCCcccHHHHHHHcCCccee
Confidence            9999999999999997655543   36778888721     3889999999999999999998766

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=3.6e-27  Score=208.57  Aligned_cols=92  Identities=16%  Similarity=0.185  Sum_probs=54.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      ++|+.|+..|+.+.++.+++.. +.+.+..+..|.||||+|+..|+.+++++|++.+.     +++.+|.+|+||||+|+
T Consensus        10 ~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A           10 RQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA-----DVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCC-----CCCccCCCCCCHHHHHH
Confidence            3566666666666666666543 23444555556666666666666666666666542     35566666666666666


Q ss_pred             HcCCHHHHHHHHhcCccc
Q 041922           84 ALGNEAMCHCMASKDREL  101 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~  101 (523)
                      ..|+.+++++|+++|+++
T Consensus        84 ~~~~~~~v~~Ll~~g~~~  101 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVV  101 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCT
T ss_pred             HcCcHHHHHHHHhCCCCC
Confidence            666666666666665543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.8e-27  Score=208.33  Aligned_cols=147  Identities=21%  Similarity=0.237  Sum_probs=134.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEecc
Q 041922           37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSS  116 (523)
Q Consensus        37 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~  116 (523)
                      |.||||.|+..|+.++++.|++..    +.+++.+|..|+||||+ +..|+.+++++|+++|+++               
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~----~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~---------------   61 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRE----LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP---------------   61 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTT----CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT---------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhh----CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC---------------
Confidence            579999999999999999999872    23588999999999999 9999999999999998766               


Q ss_pred             CCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhh
Q 041922          117 GNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDET  196 (523)
Q Consensus       117 ~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  196 (523)
                                                                                                      
T Consensus        62 --------------------------------------------------------------------------------   61 (156)
T 1bd8_A           62 --------------------------------------------------------------------------------   61 (156)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcccc
Q 041922          197 ATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKML  276 (523)
Q Consensus       197 ~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  276 (523)
                                    +.+|..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+.+|+.+++++|+++ + 
T Consensus        62 --------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~-  124 (156)
T 1bd8_A           62 --------------NVQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S-  124 (156)
T ss_dssp             --------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S-
T ss_pred             --------------CCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c-
Confidence                          22445689999999999999999999997 899999999999999999999999999999999 7 


Q ss_pred             CCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          277 GESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       277 ~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                            +++.+|.+|+||||+|+..|+.++
T Consensus       125 ------~~~~~~~~g~t~l~~A~~~~~~~~  148 (156)
T 1bd8_A          125 ------DLHRRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             ------CTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred             ------CCCCcCCCCCCHHHHHHHcCcHHH
Confidence                  999999999999999999998654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.7e-27  Score=210.65  Aligned_cols=151  Identities=21%  Similarity=0.228  Sum_probs=134.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCcee
Q 041922           33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANC  112 (523)
Q Consensus        33 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~  112 (523)
                      .|.+|.||||.|+..|+.++++.|++.+.    ..++..|..|.||||+|+..|+.+++++|+++|+++           
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------   68 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-----------   68 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTT----TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----------
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCC----CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-----------
Confidence            46789999999999999999999998642    457888999999999999999999999999998765           


Q ss_pred             EeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCc
Q 041922          113 SWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNA  192 (523)
Q Consensus       113 l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (523)
                                                                                                      
T Consensus        69 --------------------------------------------------------------------------------   68 (165)
T 3twr_A           69 --------------------------------------------------------------------------------   68 (165)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHh
Q 041922          193 RDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLD  272 (523)
Q Consensus       193 ~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  272 (523)
                                        +.+|..|.||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+.+|+.+++++|++
T Consensus        69 ------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  129 (165)
T 3twr_A           69 ------------------HAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ  129 (165)
T ss_dssp             ------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ------------------CccCCCCCCHHHHHHHcCcHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                              22445689999999999999999999997 89999999999999999999999999999999


Q ss_pred             ccccCCccccccccccCCCCcHhHHHHHhCCCC
Q 041922          273 RKMLGESDLNIFEHVDIKGNSALHLAAKFGEYG  305 (523)
Q Consensus       273 ~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~  305 (523)
                      +|+       +++.+|.+|+||||+|+. ++.+
T Consensus       130 ~ga-------~~~~~~~~g~t~l~~a~~-~~~~  154 (165)
T 3twr_A          130 HGA-------DPTKKNRDGNTPLDLVKD-GDTD  154 (165)
T ss_dssp             TTC-------CTTCCCTTSCCTGGGSCT-TCHH
T ss_pred             cCC-------CCcccCCCCCChhHhHhc-CChH
Confidence            999       999999999999999776 6643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=3.5e-27  Score=227.06  Aligned_cols=175  Identities=15%  Similarity=0.121  Sum_probs=149.8

Q ss_pred             CCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCC
Q 041922           74 RGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKD  153 (523)
Q Consensus        74 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~  153 (523)
                      .+.+|+|.|+..|+.+.++.+++.+.+.                                .+|.+|.+|+||||+|+.  
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~--------------------------------~~n~~d~~g~T~Lh~A~~--  120 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDY--------------------------------VVNIADSNGNTALHYSVS--  120 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHH--------------------------------HHTCCCTTSCCHHHHHHH--
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhh--------------------------------cCcCCCCCCCCHHHHHHH--
Confidence            4578999999999999999999987643                                347889999999998872  


Q ss_pred             CCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc-----ccccCCCChHHHHHH---
Q 041922          154 GDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK-----DQQSGRKATPILIAA---  225 (523)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa---  225 (523)
                                                                  .+..++++.|++.     +..+..|.||||+|+   
T Consensus       121 --------------------------------------------~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A          121 --------------------------------------------HANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             --------------------------------------------TTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             --------------------------------------------CCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence                                                        2235688999887     556788999999999   


Q ss_pred             --HcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCC
Q 041922          226 --KMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGE  303 (523)
Q Consensus       226 --~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  303 (523)
                        ..|+.++++.|++. |++.+..|..|+||||+|+.+|+.+++++|+++|+       ++|.+|.+|+||||+|+..|+
T Consensus       157 ~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga-------d~n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEA-------DVNVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             CCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSCCHHHHHHHHTC
T ss_pred             hhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-------CCCCCCCCCCCHHHHHHHCCC
Confidence              67999999999998 78899999999999999999999999999999999       999999999999999999998


Q ss_pred             CCCccCCcchhhhHHHhHHHHHHHhhCC-ccc-ccccCCCCCChhHHhhhhh
Q 041922          304 YGPWRIPGAALQMQWEIKWYKFVKESMP-RYF-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       304 ~~~~~~~g~~l~~~~~~~~~~~v~~~~~-~~~-~~~~n~~G~Tpl~la~~~~  353 (523)
                      .+++                   +.++. .++ ++.+|.+|+||+++|.+..
T Consensus       229 ~~iv-------------------~~Ll~~~gad~~~~d~~g~TpL~~A~~~g  261 (276)
T 4hbd_A          229 KEIA-------------------GLLLAVPSCDISLTDRDGSTALMVALDAG  261 (276)
T ss_dssp             HHHH-------------------HHHHTSTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHH-------------------HHHHhcCCCCCcCcCCCCCCHHHHHHHcC
Confidence            5543                   33333 333 6899999999999999764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=4.9e-27  Score=210.73  Aligned_cols=150  Identities=17%  Similarity=0.148  Sum_probs=134.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEe
Q 041922           35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSW  114 (523)
Q Consensus        35 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~  114 (523)
                      +++.++||.|+..|+.++++.|++.+.    .+++.+|..|.||||+|+..|+.+++++|++.|++++            
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------   66 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTE----NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN------------   66 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTT----SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCc----ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC------------
Confidence            568899999999999999999999643    4689999999999999999999999999999987662            


Q ss_pred             ccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcch
Q 041922          115 SSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARD  194 (523)
Q Consensus       115 ~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (523)
                                                                                                      
T Consensus        67 --------------------------------------------------------------------------------   66 (179)
T 3f6q_A           67 --------------------------------------------------------------------------------   66 (179)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcc
Q 041922          195 ETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRK  274 (523)
Q Consensus       195 ~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  274 (523)
                                       ..+..|.||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus        67 -----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  128 (179)
T 3f6q_A           67 -----------------VMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANG  128 (179)
T ss_dssp             -----------------CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -----------------CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                             2344689999999999999999999997 8999999999999999999999999999999999


Q ss_pred             ccCCccccccccccCCCCcHhHHHHHhCCCC
Q 041922          275 MLGESDLNIFEHVDIKGNSALHLAAKFGEYG  305 (523)
Q Consensus       275 ~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~  305 (523)
                      +       +++.+|.+|+||||+|+..++.+
T Consensus       129 a-------~~~~~~~~g~tpl~~A~~~~~~~  152 (179)
T 3f6q_A          129 A-------LVSICNKYGEMPVDKAKAPLREL  152 (179)
T ss_dssp             C-------CSSBCCTTSCCGGGGSCHHHHHH
T ss_pred             C-------CcchhccCCCCcHHHHHHHHHHH
Confidence            9       99999999999999999877643

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=4.1e-27  Score=221.63  Aligned_cols=175  Identities=15%  Similarity=0.115  Sum_probs=114.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+|+.|+..|+.+.++.+++.  +.+++. +..|.||||.|+..|+.++++.|++.+.     +++.+|..|+||||+|+
T Consensus         7 t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            7 VSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD-----DPSLPNDEGITALHNAV   78 (239)
T ss_dssp             ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS-----SCCCCCTTSCCHHHHHH
T ss_pred             ccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHH
Confidence            346666666666666666665  344432 3556677777777777777777766542     36666666777777777


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+++++|+++|+++                                                              
T Consensus        79 ~~g~~~~v~~Ll~~ga~~--------------------------------------------------------------   96 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNV--------------------------------------------------------------   96 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCT--------------------------------------------------------------
T ss_pred             HcCCHHHHHHHHHcCCCC--------------------------------------------------------------
Confidence            777777777777666554                                                              


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCc
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVA  243 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  243 (523)
                                                                     +.+|..|.||||+|+..|+.+++++|+++ |++
T Consensus        97 -----------------------------------------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~  128 (239)
T 1ycs_B           97 -----------------------------------------------NAADSDGWTPLHCAASCNNVQVCKFLVES-GAA  128 (239)
T ss_dssp             -----------------------------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             -----------------------------------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence                                                           34566799999999999999999999997 899


Q ss_pred             ccccccCCC-cHHHHH--HHcCchhHHHHHHhccccCCccccccccc---------cCCCCcHhHHHHHhCC
Q 041922          244 IHDLDSEKK-NLVLLA--VENRQTGIYKLLLDRKMLGESDLNIFEHV---------DIKGNSALHLAAKFGE  303 (523)
Q Consensus       244 ~~~~d~~G~-t~Lh~A--~~~~~~~iv~~Ll~~~~~~~~~~~~in~~---------d~~G~TpLH~Aa~~~~  303 (523)
                      ++..|.+|. ||||+|  +.+|+.+++++|+++|+       +++..         |..|.||+|++...|.
T Consensus       129 ~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a-------~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          129 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE-------KMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH-------HTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhh-------cccccccceEEEEeccCCCCCCcccccCCC
Confidence            999998877 999999  88899999999999998       55544         6778899998888876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.6e-26  Score=202.41  Aligned_cols=145  Identities=17%  Similarity=0.095  Sum_probs=112.3

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc
Q 041922           31 AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA  110 (523)
Q Consensus        31 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  110 (523)
                      +..+..|.||||+|+..|+.+++++|++.+.     +++.+|..|+||||+|+ .|+.+++++|+++|+++         
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~---------   70 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGA-----NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP---------   70 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTC-----CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC---------
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC---------
Confidence            3457789999999999999999999998753     58889999999999985 89999999999988765         


Q ss_pred             eeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCC
Q 041922          111 NCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDG  190 (523)
Q Consensus       111 l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (523)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (156)
T 1bi7_B           71 --------------------------------------------------------------------------------   70 (156)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcchhhhhHHHHHHHHHHhcccccCCCCh-HHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHH
Q 041922          191 NARDETATAAVQELKFMKKKDQQSGRKAT-PILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKL  269 (523)
Q Consensus       191 ~~~~~~~~~~~~~v~~Ll~~~~~~~~g~t-pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~  269 (523)
                                          +.+|..|.| |||+|+..|+.+++++|+++ |++++.+|.+|+||||+|+.+|+.+++++
T Consensus        71 --------------------~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~  129 (156)
T 1bi7_B           71 --------------------NCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARY  129 (156)
T ss_dssp             --------------------CCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             --------------------CCcCCCCCcHHHHHHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHH
Confidence                                234456888 99999999999999999998 89999999999999999999999999999


Q ss_pred             HHhccccCCccccccccccCCCCcHhHHH
Q 041922          270 LLDRKMLGESDLNIFEHVDIKGNSALHLA  298 (523)
Q Consensus       270 Ll~~~~~~~~~~~~in~~d~~G~TpLH~A  298 (523)
                      |+++|+       +++.+|..|+||.+-+
T Consensus       130 Ll~~ga-------~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          130 LRAAAG-------GTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HSSCC------------------------
T ss_pred             HHHcCC-------CCCccCcCcCcccccC
Confidence            999999       9999999999998844

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=9.8e-27  Score=219.02  Aligned_cols=188  Identities=13%  Similarity=0.043  Sum_probs=122.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeE
Q 041922           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCS  113 (523)
Q Consensus        34 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l  113 (523)
                      +..|.||||.|++.|+.+.++.|++.|.+     ++. +..|.||||.|+..|+.+++++|++.|+++            
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~-----~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------   63 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMR-----VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP------------   63 (239)
T ss_dssp             -----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC------------
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCC-----ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC------------
Confidence            35699999999999999999999998753     554 478999999999999999999999998765            


Q ss_pred             eccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcc
Q 041922          114 WSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNAR  193 (523)
Q Consensus       114 ~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  193 (523)
                                                                                                      
T Consensus        64 --------------------------------------------------------------------------------   63 (239)
T 1ycs_B           64 --------------------------------------------------------------------------------   63 (239)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhc
Q 041922          194 DETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDR  273 (523)
Q Consensus       194 ~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  273 (523)
                                       +.+|..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+.+|+.+++++|+++
T Consensus        64 -----------------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  125 (239)
T 1ycs_B           64 -----------------SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES  125 (239)
T ss_dssp             -----------------CCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             -----------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                             23445689999999999999999999998 899999999999999999999999999999999


Q ss_pred             cccCCccccccccccCCCC-cHhHHH--HHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCcccccccCCCCCChhHHhh
Q 041922          274 KMLGESDLNIFEHVDIKGN-SALHLA--AKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGYNNKGKTPKEIFT  350 (523)
Q Consensus       274 ~~~~~~~~~~in~~d~~G~-TpLH~A--a~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~~~~~n~~G~Tpl~la~  350 (523)
                      |+       +++.+|..|. ||||+|  +..|+.+++...   +....      .+............+..|++|.+++.
T Consensus       126 ga-------~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L---l~~~a------~~~~~~~~~~~al~d~~~~~~~eLa~  189 (239)
T 1ycs_B          126 GA-------AVFAMTYSDMQTAADKCEEMEEGYTQCSQFL---YGVQE------KMGIMNKGVIYALWDYEPQNDDELPM  189 (239)
T ss_dssp             TC-------CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH---HHHHH------HTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred             CC-------CcceecCCCCcchHHHHHHhhhccHHHHHHH---HHhhh------cccccccceEEEEeccCCCCCCcccc
Confidence            99       9999998887 999999  677887765210   00000      00000111113455888999999887


Q ss_pred             hhh
Q 041922          351 KTH  353 (523)
Q Consensus       351 ~~~  353 (523)
                      +..
T Consensus       190 ~~G  192 (239)
T 1ycs_B          190 KEG  192 (239)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.5e-26  Score=208.52  Aligned_cols=167  Identities=12%  Similarity=0.083  Sum_probs=136.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccC-CCCCcHHHHHHHcCCH----HHHHHHHHHhcccccccccccccCCCh
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLT-RSGDTALHIAAAAGQT----NIVSELVEIMGENASNVLKIQNDRGDT   77 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~-~~g~T~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~~d~~G~T   77 (523)
                      .++|+.|+..|+.+.++.++...+    +.++ ..|+||||+|+..|+.    +++++|++.|+     ++|.+|.+|+|
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga-----dvn~~d~~g~T   77 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA-----DIKSRTKEGTT   77 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC-----CSSCCCTTCCC
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC-----CCCCCCCCCCc
Confidence            367999999999999999998843    2334 6799999999999985    59999999874     59999999999


Q ss_pred             HHhHHHHcCC------HHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCC-CccccCC
Q 041922           78 ALHLAAALGN------EAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGK-SSRDSRP  150 (523)
Q Consensus        78 pLh~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~-tpLh~a~  150 (523)
                      |||+|+..|+      .+++++|+++|+++                                  +.+|..|+ ||||+|+
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi----------------------------------n~~d~~g~ttpLh~A~  123 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGADI----------------------------------TALYKPYKIVVFKNIF  123 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCCS----------------------------------SSCBGGGTBCTTGGGG
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCCC----------------------------------CccCCCcCchHHHHHH
Confidence            9999999987      67899999987655                                  66677777 7777765


Q ss_pred             CCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChH
Q 041922          151 DKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVT  230 (523)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~  230 (523)
                      ..                                                                |.+      ..++.
T Consensus       124 ~~----------------------------------------------------------------~~~------~~~~~  133 (186)
T 3t8k_A          124 NY----------------------------------------------------------------FVD------ENEMI  133 (186)
T ss_dssp             GC----------------------------------------------------------------CSC------HHHHH
T ss_pred             Hc----------------------------------------------------------------CCC------hhhHH
Confidence            10                                                                110      12456


Q ss_pred             HHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccC
Q 041922          231 EMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDI  289 (523)
Q Consensus       231 ~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~  289 (523)
                      +++++|++..|++++.+|..|+||||+|++.|+.+++++|.+...       ..+.+|+
T Consensus       134 ~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~-------~~~~~~~  185 (186)
T 3t8k_A          134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK-------KYNLKEN  185 (186)
T ss_dssp             HHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH-------HHTCCC-
T ss_pred             HHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH-------HHhcccC
Confidence            789999993499999999999999999999999999999998876       6666654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1e-25  Score=192.40  Aligned_cols=132  Identities=20%  Similarity=0.166  Sum_probs=119.9

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCC
Q 041922           28 SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADE  107 (523)
Q Consensus        28 ~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  107 (523)
                      .+++..+..|.||||+|+..|+.+++++|++.+     .+++.+|..|+||||+|+. |+.+++++|+++|+++      
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~------   70 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAG-----ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP------   70 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS------
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcC-----CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC------
Confidence            456788999999999999999999999999975     3588999999999999999 9999999999998766      


Q ss_pred             CCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhc
Q 041922          108 GLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHN  187 (523)
Q Consensus       108 ~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (523)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (136)
T 1d9s_A           71 --------------------------------------------------------------------------------   70 (136)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCcchhhhhHHHHHHHHHHhcccccCC-CChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhH
Q 041922          188 KDGNARDETATAAVQELKFMKKKDQQSGR-KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGI  266 (523)
Q Consensus       188 ~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~-g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~i  266 (523)
                                             +.+|.. |.||||+|+..|+.+++++|++. +++++.+|..|+||||+|+.+++.++
T Consensus        71 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~  126 (136)
T 1d9s_A           71 -----------------------NCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDI  126 (136)
T ss_dssp             -----------------------SCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHH
T ss_pred             -----------------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHH
Confidence                                   234456 89999999999999999999997 89999999999999999999999999


Q ss_pred             HHHHHhccc
Q 041922          267 YKLLLDRKM  275 (523)
Q Consensus       267 v~~Ll~~~~  275 (523)
                      +++|+++|+
T Consensus       127 ~~~Ll~~Ga  135 (136)
T 1d9s_A          127 ARYLHAATG  135 (136)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHcCC
Confidence            999999987

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=1.3e-25  Score=202.41  Aligned_cols=146  Identities=16%  Similarity=0.096  Sum_probs=125.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhcccccccccccc-cCCChHHhHHHHcCCH----HHHHHHHhcCcccccccCCCCce
Q 041922           37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN-DRGDTALHLAAALGNE----AMCHCMASKDRELISAADEGLAN  111 (523)
Q Consensus        37 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d-~~G~TpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~~~l  111 (523)
                      +.++||.|++.|+.+.++.+++.+       ++.++ ..|+||||+|+..|+.    +++++|+++|++++         
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~-------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn---------   69 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG-------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK---------   69 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS-------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS---------
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC-------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC---------
Confidence            568999999999999999998753       45566 7899999999999985    59999999998762         


Q ss_pred             eEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCC
Q 041922          112 CSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGN  191 (523)
Q Consensus       112 ~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (523)
                                                                                                      
T Consensus        70 --------------------------------------------------------------------------------   69 (186)
T 3t8k_A           70 --------------------------------------------------------------------------------   69 (186)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcCh------HHHHHHHHhhCCCcccccccCCC-cHHHHHHHcC--
Q 041922          192 ARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGV------TEMVEKILDTIPVAIHDLDSEKK-NLVLLAVENR--  262 (523)
Q Consensus       192 ~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~------~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~~--  262 (523)
                                          .+|.+|+||||+|+..|+      .+++++|+++ |++++.+|.+|+ ||||+|+..+  
T Consensus        70 --------------------~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~  128 (186)
T 3t8k_A           70 --------------------SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVD  128 (186)
T ss_dssp             --------------------CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSC
T ss_pred             --------------------CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCC
Confidence                                234457778888888776      6889999997 999999999999 9999999954  


Q ss_pred             ---chhHHHHHHh-ccccCCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          263 ---QTGIYKLLLD-RKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       263 ---~~~iv~~Ll~-~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                         +.+++++|++ +|+       ++|.+|.+|+||||+|++.++.++
T Consensus       129 ~~~~~~iv~~Ll~~~ga-------d~~~~d~~G~TpL~~A~~~~~~~~  169 (186)
T 3t8k_A          129 ENEMIPLYKLIFSQSGL-------QLLIKDKWGLTALEFVKRCQKPIA  169 (186)
T ss_dssp             HHHHHHHHHHHHTSTTC-------CTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred             hhhHHHHHHHHHHhcCC-------CCcccCCCCCCHHHHHHHcCCHHH
Confidence               4569999999 999       999999999999999999998654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=8.3e-26  Score=225.61  Aligned_cols=193  Identities=13%  Similarity=0.120  Sum_probs=115.3

Q ss_pred             HHHHH-cCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHc
Q 041922            7 SKFAM-RGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAAL   85 (523)
Q Consensus         7 ~~Aa~-~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~   85 (523)
                      +.|.. .++.+.++.++.+  +       .+++||||+||+.|+.++|++|++.+...  ...+..|..|.||||+|++.
T Consensus        70 ~~a~~~~~~~~~~~~l~~~--g-------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~--~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           70 YYAHYNRNAKQLWSDAHKK--G-------IKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHTTTTCTTHHHHHHHH--T-------CCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCHHHHHHHHHc--C-------CCcCCHHHHHHHcCCHHHHHHHHHcCCcH--HHHHHhccCCCCHHHHHHHc
Confidence            33443 3566666666655  2       23458888888888888888888776421  12344556677888888888


Q ss_pred             CCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCC
Q 041922           86 GNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPV  165 (523)
Q Consensus        86 g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~  165 (523)
                      |+.+++++|+++|++...                             .+++..+   .||||.|+.              
T Consensus       139 G~~eiv~~Ll~~gad~~~-----------------------------~~i~~~~---~TpLh~Aa~--------------  172 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIM-----------------------------AMIQAEN---YHAFRLAAE--------------  172 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHH-----------------------------HHHSHHH---HHHHHHHHH--------------
T ss_pred             CCHHHHHHHHhCCCCccc-----------------------------cccCCCC---CCHHHHHHH--------------
Confidence            888888888888764211                             0111111   566665551              


Q ss_pred             CCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcc----c--ccCCCChHHHHHH-HcChHHHHHHHHh
Q 041922          166 LENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKD----Q--QSGRKATPILIAA-KMGVTEMVEKILD  238 (523)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~----~--~~~~g~tpLh~Aa-~~g~~~~v~~Ll~  238 (523)
                                                   .+   ..+++++|+++.    .  .|.+|.||||+|+ ..|+.+++++|++
T Consensus       173 -----------------------------~G---~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~  220 (376)
T 2aja_A          173 -----------------------------NG---HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD  220 (376)
T ss_dssp             -----------------------------TT---CHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             -----------------------------CC---CHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence                                         11   234666666651    1  4455677777777 7777777777776


Q ss_pred             hCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          239 TIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       239 ~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      . |+       .|+||||+|+.+|+.+++++|+++|+       +++.+|    ++++.|+..|+.+++
T Consensus       221 ~-ga-------~~~taL~~Aa~~g~~evv~lL~~~ga-------~~~~~~----~~l~~A~~~g~~~vv  270 (376)
T 2aja_A          221 C-PV-------MLAYAEIHEFEYGEKYVNPFIARHVN-------RLKEMH----DAFKLSNPDGVFDLV  270 (376)
T ss_dssp             S-HH-------HHHHHHHCTTTTTTTTHHHHHHHHHH-------HHHHHH----TTTTTTSSSSCCCCS
T ss_pred             C-CC-------ccchHHHHHHHCCCHHHHHHHHhcCc-------cccccc----HHHHHHHHCCChhhh
Confidence            3 32       26677777777777777777777766       555443    356666666666544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=3.2e-24  Score=183.17  Aligned_cols=127  Identities=21%  Similarity=0.230  Sum_probs=113.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCcee
Q 041922           33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANC  112 (523)
Q Consensus        33 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~  112 (523)
                      ....|.||||+|+..|+.+++++|++.+.     +++.+|..|+||||+|+..|+.+++++|+++|+++           
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------   73 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGA-----DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-----------   73 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------
Confidence            45678999999999999999999999863     58999999999999999999999999999998766           


Q ss_pred             EeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCc
Q 041922          113 SWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNA  192 (523)
Q Consensus       113 l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (523)
                                                                                                      
T Consensus        74 --------------------------------------------------------------------------------   73 (136)
T 2jab_A           74 --------------------------------------------------------------------------------   73 (136)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHh
Q 041922          193 RDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLD  272 (523)
Q Consensus       193 ~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  272 (523)
                                        +..|..|.||||+|+..|+.+++++|+++ +++++..|.+|+||||+|+.+|+.+++++|++
T Consensus        74 ------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           74 ------------------NAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             ------------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence                              22445689999999999999999999997 89999999999999999999999999999998


Q ss_pred             cc
Q 041922          273 RK  274 (523)
Q Consensus       273 ~~  274 (523)
                      .|
T Consensus       135 ~G  136 (136)
T 2jab_A          135 LN  136 (136)
T ss_dssp             C-
T ss_pred             cC
Confidence            76

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.3e-23  Score=176.31  Aligned_cols=125  Identities=27%  Similarity=0.417  Sum_probs=115.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEec
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWS  115 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~  115 (523)
                      +|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|++.|+++              
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--------------   61 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV--------------   61 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC-----CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC--------------
Confidence            58999999999999999999999864     48889999999999999999999999999998765              


Q ss_pred             cCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchh
Q 041922          116 SGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDE  195 (523)
Q Consensus       116 ~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (523)
                                                                                                      
T Consensus        62 --------------------------------------------------------------------------------   61 (126)
T 1n0r_A           62 --------------------------------------------------------------------------------   61 (126)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          196 TATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       196 ~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                                     +.++..|.||||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|+.+++.+++++|+++|+
T Consensus        62 ---------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           62 ---------------NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             ---------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ---------------cccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence                           22344689999999999999999999997 89999999999999999999999999999999997

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=4.6e-24  Score=186.75  Aligned_cols=106  Identities=17%  Similarity=0.061  Sum_probs=77.0

Q ss_pred             CCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCc-HHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcH
Q 041922          216 RKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKN-LVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSA  294 (523)
Q Consensus       216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t-~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~Tp  294 (523)
                      .|.||||+|+ .|+.+++++|++. +++++.+|..|+| |||+|+.+|+.+++++|+++|+       +++.+|.+|+||
T Consensus        44 ~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga-------~~~~~d~~g~tp  114 (156)
T 1bi7_B           44 YGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-------RLDVRDAWGRLP  114 (156)
T ss_dssp             SSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC-------CSSCCCTTCCCH
T ss_pred             CCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCC-------CCcccCCCCCCH
Confidence            3455555553 6889999999997 8999999999999 9999999999999999999999       999999999999


Q ss_pred             hHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHh
Q 041922          295 LHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIF  349 (523)
Q Consensus       295 LH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la  349 (523)
                      ||+|+..++.++                   ++.++..+. .+.+|..|.||.+-.
T Consensus       115 l~~A~~~~~~~~-------------------v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          115 VDLAEELGHRDV-------------------ARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHH-------------------HHHHSSCC-----------------
T ss_pred             HHHHHHhCHHHH-------------------HHHHHHcCCCCCccCcCcCcccccC
Confidence            999999998543                   344555555 688999999998744

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=2.6e-24  Score=183.69  Aligned_cols=123  Identities=16%  Similarity=0.115  Sum_probs=110.9

Q ss_pred             ccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCc
Q 041922           66 NVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSS  145 (523)
Q Consensus        66 ~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tp  145 (523)
                      .+++.+|..|.||||+|++.|+.+++++|+++|+++                                  +.        
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------------------------------~~--------   40 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP----------------------------------NA--------   40 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT----------------------------------TC--------
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc----------------------------------CC--------
Confidence            468999999999999999999999999999998765                                  22        


Q ss_pred             cccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHH
Q 041922          146 RDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAA  225 (523)
Q Consensus       146 Lh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa  225 (523)
                                                                                         ++..|.||||+|+
T Consensus        41 -------------------------------------------------------------------~~~~g~t~L~~A~   53 (136)
T 1d9s_A           41 -------------------------------------------------------------------LNRFGRRPIQVMM   53 (136)
T ss_dssp             -------------------------------------------------------------------CCTTCCTTTTTST
T ss_pred             -------------------------------------------------------------------cCCCCCCHHHHHH
Confidence                                                                               3345777777788


Q ss_pred             HcChHHHHHHHHhhCCCcccccccC-CCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCC
Q 041922          226 KMGVTEMVEKILDTIPVAIHDLDSE-KKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEY  304 (523)
Q Consensus       226 ~~g~~~~v~~Ll~~~~~~~~~~d~~-G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  304 (523)
                      . |+.+++++|++. +++++.+|.. |+||||+|+.+|+.+++++|+++|+       +++.+|.+|+||||+|+..++.
T Consensus        54 ~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------~~~~~d~~g~tpl~~A~~~~~~  124 (136)
T 1d9s_A           54 M-GSAQVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-------RLDVCDAWGRLPVDLAEEQGHR  124 (136)
T ss_dssp             T-SCHHHHHHHHHH-TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCC-------CCCCCSSSSSCHHHHHHHHTCH
T ss_pred             c-CCHHHHHHHHHC-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCCccCCCCCCHHHHHHHcCCH
Confidence            8 999999999998 8999999999 9999999999999999999999999       9999999999999999999986


Q ss_pred             CC
Q 041922          305 GP  306 (523)
Q Consensus       305 ~~  306 (523)
                      ++
T Consensus       125 ~~  126 (136)
T 1d9s_A          125 DI  126 (136)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=7.3e-24  Score=181.08  Aligned_cols=129  Identities=19%  Similarity=0.176  Sum_probs=90.9

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCce
Q 041922           32 KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLAN  111 (523)
Q Consensus        32 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l  111 (523)
                      .+|.+|+||||+|+..|+.+++++|++.+.     +++.+|..|+||||+|+..|+.+++++|+++|++++         
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------   70 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGS-----DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN---------   70 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc---------
Confidence            456777788888888888888877777643     467777777788888887777777777777766541         


Q ss_pred             eEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCC
Q 041922          112 CSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGN  191 (523)
Q Consensus       112 ~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (523)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (137)
T 3c5r_A           71 --------------------------------------------------------------------------------   70 (137)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHH
Q 041922          192 ARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL  271 (523)
Q Consensus       192 ~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  271 (523)
                                          .+|..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+..+..+++++|.
T Consensus        71 --------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           71 --------------------TTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             --------------------CCCGGGCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             --------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence                                2233467777777777777777777775 7777777777777777777777777776666


Q ss_pred             hccc
Q 041922          272 DRKM  275 (523)
Q Consensus       272 ~~~~  275 (523)
                      +.+.
T Consensus       130 ~~~~  133 (137)
T 3c5r_A          130 KNES  133 (137)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=3.7e-23  Score=201.04  Aligned_cols=140  Identities=14%  Similarity=0.091  Sum_probs=110.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhcccccccccc------cccCCChHHhHHHHc---CCHHHHHHHHhcCcccccccCC
Q 041922           37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKI------QNDRGDTALHLAAAL---GNEAMCHCMASKDRELISAADE  107 (523)
Q Consensus        37 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~------~d~~G~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~  107 (523)
                      +.++||.|+..|+.+.++.|++.+.     +++.      +|..|+||||+|+..   |+.+++++|+++|+++      
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~-----d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv------  219 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQ-----DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL------  219 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTC-----CTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT------
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCC-----cccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC------
Confidence            3456888888888888888877653     2444      577788888888876   7788888888777655      


Q ss_pred             CCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhc
Q 041922          108 GLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHN  187 (523)
Q Consensus       108 ~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (523)
                                                                                                      
T Consensus       220 --------------------------------------------------------------------------------  219 (301)
T 2b0o_E          220 --------------------------------------------------------------------------------  219 (301)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHH
Q 041922          188 KDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIY  267 (523)
Q Consensus       188 ~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv  267 (523)
                                             +.+|.+|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+..++.+++
T Consensus       220 -----------------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv  275 (301)
T 2b0o_E          220 -----------------------DAKAADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECE  275 (301)
T ss_dssp             -----------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             -----------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence                                   33456799999999999999999999997 999999999999999999999999999


Q ss_pred             HHHHhccccCCccccccccccCCCCcHhHHHHHhCCC
Q 041922          268 KLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEY  304 (523)
Q Consensus       268 ~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~  304 (523)
                      ++|+++|+       +      .|+||||+|+..|+.
T Consensus       276 ~~Ll~~ga-------~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          276 ELLEQAQA-------G------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHH-------H------TTSSCCC--------
T ss_pred             HHHHHhcC-------C------CCCChhHHHHhcCCc
Confidence            99999998       4      589999999998873

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=5.3e-23  Score=175.71  Aligned_cols=85  Identities=20%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCC
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                      +|..|.||||+|+..|+.+++++|++. +++++.+|..|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+
T Consensus        39 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------~~~~~~~~g~  110 (137)
T 3c5r_A           39 KDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA-------SRNAVNIFGL  110 (137)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCCCCCCCCC
Confidence            345689999999999999999999997 89999999999999999999999999999999999       9999999999


Q ss_pred             cHhHHHHHhCCCC
Q 041922          293 SALHLAAKFGEYG  305 (523)
Q Consensus       293 TpLH~Aa~~~~~~  305 (523)
                      ||||+|+..+..+
T Consensus       111 tpl~~A~~~~~~~  123 (137)
T 3c5r_A          111 RPVDYTDDESMKS  123 (137)
T ss_dssp             CGGGGCCCHHHHH
T ss_pred             CHHHHHhhccHHH
Confidence            9999998776644

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=4.3e-24  Score=201.54  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccc-cCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCC
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLD-SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKG  291 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G  291 (523)
                      +|..|.||||+|+..|+.+++++|++. |++++.+| ..|+||||+|+.+|+.+++++|+++|+       +++.+|.+|
T Consensus        73 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-------~~~~~d~~g  144 (244)
T 3ui2_A           73 VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-------DIEVEDERG  144 (244)
T ss_dssp             BCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTC
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-------CCCCCCCCC
Confidence            344578888888888888888888886 78888777 778888888888888888888888887       888888888


Q ss_pred             CcHhHHHHHhCC
Q 041922          292 NSALHLAAKFGE  303 (523)
Q Consensus       292 ~TpLH~Aa~~~~  303 (523)
                      +||||+|+..++
T Consensus       145 ~t~l~~A~~~~~  156 (244)
T 3ui2_A          145 LTALELAREILK  156 (244)
T ss_dssp             CCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHh
Confidence            888888876443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=6.3e-23  Score=175.05  Aligned_cols=86  Identities=21%  Similarity=0.222  Sum_probs=80.8

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCC
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                      .|..|.||||+|+..|+.+++++|++. +++++..|.+|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+
T Consensus        43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------~~~~~~~~g~  114 (136)
T 2jab_A           43 KDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA-------DVNAQDKFGK  114 (136)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-------CTTCCCTTSC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCcCcCCCCC
Confidence            345689999999999999999999997 89999999999999999999999999999999999       9999999999


Q ss_pred             cHhHHHHHhCCCCC
Q 041922          293 SALHLAAKFGEYGP  306 (523)
Q Consensus       293 TpLH~Aa~~~~~~~  306 (523)
                      ||||+|+..++.++
T Consensus       115 tpl~~A~~~~~~~~  128 (136)
T 2jab_A          115 TAFDISIGNGNEDL  128 (136)
T ss_dssp             CHHHHHHHTTCHHH
T ss_pred             CHHHHHHHCCCHHH
Confidence            99999999998654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=2.8e-23  Score=193.02  Aligned_cols=129  Identities=22%  Similarity=0.191  Sum_probs=104.5

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhc-CcccccccCCCCc
Q 041922           32 KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASK-DRELISAADEGLA  110 (523)
Q Consensus        32 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~  110 (523)
                      ..+..|.||||+||..|+.++++.|++.+.     +++.+|..|+||||+|+..|+.+++++|++. |+++         
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~---------  133 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRV-----GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL---------  133 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC---------
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCC-----CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc---------
Confidence            345577899999999999999999998753     4888899999999999999999999999987 6554         


Q ss_pred             eeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCC
Q 041922          111 NCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDG  190 (523)
Q Consensus       111 l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (523)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (222)
T 3ehr_A          134 --------------------------------------------------------------------------------  133 (222)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHH
Q 041922          191 NARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLL  270 (523)
Q Consensus       191 ~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~L  270 (523)
                                          +.+|..|.||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|+..++.++++.|
T Consensus       134 --------------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l  192 (222)
T 3ehr_A          134 --------------------NQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKK  192 (222)
T ss_dssp             --------------------CCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC--
T ss_pred             --------------------cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHH
Confidence                                23445688899999999999999999998 899999999999999999999999999999


Q ss_pred             Hhccc
Q 041922          271 LDRKM  275 (523)
Q Consensus       271 l~~~~  275 (523)
                      ++.++
T Consensus       193 ~~~~~  197 (222)
T 3ehr_A          193 QGTDA  197 (222)
T ss_dssp             -----
T ss_pred             hccch
Confidence            99988

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=2.2e-22  Score=181.04  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=78.0

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccc-cCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCC
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLD-SEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKG  291 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G  291 (523)
                      +|..|.||||+|+..|+.+++++|++. +++++.+| .+|+||||+|+..|+.+++++|+++|+       +++.+|.+|
T Consensus        72 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-------~~~~~d~~g  143 (183)
T 3deo_A           72 VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-------DIEVEDERG  143 (183)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTC-------CTTCCCTTS
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCC-------CCcCCCCCC
Confidence            445699999999999999999999997 89999998 899999999999999999999999999       999999999


Q ss_pred             CcHhHHHHHhCC
Q 041922          292 NSALHLAAKFGE  303 (523)
Q Consensus       292 ~TpLH~Aa~~~~  303 (523)
                      +||||+|++.++
T Consensus       144 ~tpl~~A~~~~~  155 (183)
T 3deo_A          144 LTALELAREILK  155 (183)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHhcc
Confidence            999999998765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=9.2e-24  Score=210.84  Aligned_cols=168  Identities=11%  Similarity=0.022  Sum_probs=134.2

Q ss_pred             CCCcHHHHHHH-cCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEe
Q 041922           36 SGDTALHIAAA-AGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSW  114 (523)
Q Consensus        36 ~g~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~  114 (523)
                      .+.+++++|+. .++.++++++++.+            .+++||||+|++.|+.+++++|++.|+....           
T Consensus        64 ~~ll~~~~a~~~~~~~~~~~~l~~~g------------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-----------  120 (376)
T 2aja_A           64 RQLLCLYYAHYNRNAKQLWSDAHKKG------------IKSEVICFVAAITGCSSALDTLCLLLTSDEI-----------  120 (376)
T ss_dssp             HHHHHHHHHHTTTTCTTHHHHHHHHT------------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-----------
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcC------------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH-----------
Confidence            35688898887 58889999998764            3456999999999999999999999884311           


Q ss_pred             ccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcch
Q 041922          115 SSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARD  194 (523)
Q Consensus       115 ~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (523)
                                          .+..|..|.||||.|+.                                           
T Consensus       121 --------------------~~~~~~~~~tpL~~Aa~-------------------------------------------  137 (376)
T 2aja_A          121 --------------------VKVIQAENYQAFRLAAE-------------------------------------------  137 (376)
T ss_dssp             --------------------CC--CHHHHHHHHHHHH-------------------------------------------
T ss_pred             --------------------HHHhccCCCCHHHHHHH-------------------------------------------
Confidence                                12234457789998872                                           


Q ss_pred             hhhhHHHHHHHHHHhccc------ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccc--cccCCCcHHHHHH-HcCchh
Q 041922          195 ETATAAVQELKFMKKKDQ------QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHD--LDSEKKNLVLLAV-ENRQTG  265 (523)
Q Consensus       195 ~~~~~~~~~v~~Ll~~~~------~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~--~d~~G~t~Lh~A~-~~~~~~  265 (523)
                      .+   ..+++++|+++..      .+..+.||||+|+..|+.+++++|+++ |++++.  .|.+|+||||+|+ .+|+.+
T Consensus       138 ~G---~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          138 NG---HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             TT---CHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             cC---CHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHH
Confidence            22   3568888888742      112239999999999999999999997 888887  8999999999999 999999


Q ss_pred             HHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          266 IYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       266 iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      ++++|+++|+       .       |+||||+|+..|+.+++
T Consensus       214 iv~~Ll~~ga-------~-------~~taL~~Aa~~g~~evv  241 (376)
T 2aja_A          214 VINFLLDCPV-------M-------LAYAEIHEFEYGEKYVN  241 (376)
T ss_dssp             HHHHHTTSHH-------H-------HHHHHHCTTTTTTTTHH
T ss_pred             HHHHHHhCCC-------c-------cchHHHHHHHCCCHHHH
Confidence            9999999876       3       89999999999998865

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=3.3e-22  Score=167.34  Aligned_cols=81  Identities=22%  Similarity=0.172  Sum_probs=75.6

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCC
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                      .|..|.||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+..|+.+++++|+++|+       +++.+|.+|+
T Consensus        36 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-------~~~~~~~~g~  107 (123)
T 3aaa_C           36 TLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA-------DKTVKGPDGL  107 (123)
T ss_dssp             CCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-------CTTCCCTTSC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCCCcCCCCC
Confidence            345689999999999999999999997 89999999999999999999999999999999999       9999999999


Q ss_pred             cHhHHHHHh
Q 041922          293 SALHLAAKF  301 (523)
Q Consensus       293 TpLH~Aa~~  301 (523)
                      ||||+|...
T Consensus       108 t~l~~A~~~  116 (123)
T 3aaa_C          108 TAFEATDNQ  116 (123)
T ss_dssp             CHHHHCCCH
T ss_pred             CHHHHhCCH
Confidence            999999543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=2e-22  Score=168.74  Aligned_cols=117  Identities=16%  Similarity=0.143  Sum_probs=101.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeE
Q 041922           34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCS  113 (523)
Q Consensus        34 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l  113 (523)
                      +..|+||||+|+..|+.+++++|++.+.     +++.+|..|+||||+|+..|+.+++++|++.|+++            
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------   66 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGE-----DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI------------   66 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTC-----CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT------------
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCC-----CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------
Confidence            5678999999999999999999999763     48999999999999999999999999999998766            


Q ss_pred             eccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcc
Q 041922          114 WSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNAR  193 (523)
Q Consensus       114 ~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  193 (523)
                                                                                                      
T Consensus        67 --------------------------------------------------------------------------------   66 (123)
T 3aaa_C           67 --------------------------------------------------------------------------------   66 (123)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchh
Q 041922          194 DETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTG  265 (523)
Q Consensus       194 ~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~  265 (523)
                                       +.+|..|+||||+|+..|+.+++++|++. +++++.+|.+|+||||+|...+..+
T Consensus        67 -----------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           67 -----------------NAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             -----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             -----------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhCCHHHHH
Confidence                             23445689999999999999999999997 8999999999999999995444433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=4.7e-22  Score=166.70  Aligned_cols=86  Identities=28%  Similarity=0.393  Sum_probs=80.5

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCC
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                      .+..|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..++.+++++|+++|+       +++.+|.+|+
T Consensus        31 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~-------~~~~~~~~g~  102 (126)
T 1n0r_A           31 KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-------DVNAKDKNGR  102 (126)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSC
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCC-------CCcccCCCCC
Confidence            344689999999999999999999997 89999999999999999999999999999999999       9999999999


Q ss_pred             cHhHHHHHhCCCCC
Q 041922          293 SALHLAAKFGEYGP  306 (523)
Q Consensus       293 TpLH~Aa~~~~~~~  306 (523)
                      ||||+|+..++.++
T Consensus       103 t~l~~A~~~~~~~~  116 (126)
T 1n0r_A          103 TPLHLAARNGHLEV  116 (126)
T ss_dssp             CHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCcHHH
Confidence            99999999998654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=7.3e-22  Score=191.87  Aligned_cols=139  Identities=16%  Similarity=0.099  Sum_probs=115.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccc------cCCCCCcHHHHHHHc---CCHHHHHHHHHHhccccccccccccc
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAK------LTRSGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKIQND   73 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~------~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~d~   73 (523)
                      .++|+.|+..|+.+.++.++..  +.+++.      .+..|+||||+|+..   |+.+++++|++.|.     +++.+|.
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-----dvn~~d~  224 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG-----HLDAKAA  224 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS-----CTTCCCT
T ss_pred             HHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC-----CCCCCCC
Confidence            3679999999999999999988  455555      588999999999997   89999999999864     5999999


Q ss_pred             CCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCC
Q 041922           74 RGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKD  153 (523)
Q Consensus        74 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~  153 (523)
                      +|+||||+|+..|+.+++++|+++|+++                                                    
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~----------------------------------------------------  252 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALV----------------------------------------------------  252 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCC----------------------------------------------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC----------------------------------------------------
Confidence            9999999999999999999999999876                                                    


Q ss_pred             CCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHH
Q 041922          154 GDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMV  233 (523)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v  233 (523)
                                                                               +.+|..|.||||+|+..|+.+++
T Consensus       253 ---------------------------------------------------------~~~d~~G~TpL~~A~~~~~~~iv  275 (301)
T 2b0o_E          253 ---------------------------------------------------------GTVNEAGETALDIARKKHHKECE  275 (301)
T ss_dssp             ---------------------------------------------------------SCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             ---------------------------------------------------------CCcCCCCCCHHHHHHHcCCHHHH
Confidence                                                                     23455689999999999999999


Q ss_pred             HHHHhhCCCcccccccCCCcHHHHHHHcCch
Q 041922          234 EKILDTIPVAIHDLDSEKKNLVLLAVENRQT  264 (523)
Q Consensus       234 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~  264 (523)
                      ++|++. +++      .|.||||+|++.|+.
T Consensus       276 ~~Ll~~-ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          276 ELLEQA-QAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHH-HHH------TTSSCCC--------
T ss_pred             HHHHHh-cCC------CCCChhHHHHhcCCc
Confidence            999997 543      689999999998864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=3.3e-22  Score=185.74  Aligned_cols=159  Identities=16%  Similarity=0.126  Sum_probs=128.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhcc-----c-----ccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccc
Q 041922           33 LTRSGDTALHIAAAAGQTNIVSELVEIMGE-----N-----ASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELI  102 (523)
Q Consensus        33 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~-----~-----~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~  102 (523)
                      .+.+++++.+++.+.|....+..+.+.+..     +     ....++.+|..|.||||+|+..|+.+++++|++.|+++ 
T Consensus        21 ~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-   99 (222)
T 3ehr_A           21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-   99 (222)
T ss_dssp             SCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-
T ss_pred             CCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCCCc-
Confidence            355667777777777765443332221100     0     01235567888999999999999999999999998765 


Q ss_pred             cccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHH
Q 041922          103 SAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESA  182 (523)
Q Consensus       103 ~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  182 (523)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (222)
T 3ehr_A          100 --------------------------------------------------------------------------------   99 (222)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcC
Q 041922          183 VAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENR  262 (523)
Q Consensus       183 ~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~  262 (523)
                                                  +.+|..|.||||+|+..|+.+++++|++..+++++.+|.+|+||||+|+.+|
T Consensus       100 ----------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A          100 ----------------------------NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             ----------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             ----------------------------cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence                                        2234568999999999999999999999778999999999999999999999


Q ss_pred             chhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          263 QTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       263 ~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      +.+++++|+++|+       +++.+|.+|+||||+|+..++.+++
T Consensus       152 ~~~~v~~Ll~~ga-------~~~~~~~~g~t~l~~A~~~~~~~~l  189 (222)
T 3ehr_A          152 YADIVQLLLAKGA-------RTDLRNIEKKLAFDMATNAACASLL  189 (222)
T ss_dssp             CHHHHHHHHHHTC-------CSCCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             CHHHHHHHHHcCC-------CCccccCCCCCHHHHhcchhHHHHH
Confidence            9999999999999       9999999999999999988775443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=6.8e-21  Score=171.22  Aligned_cols=116  Identities=23%  Similarity=0.239  Sum_probs=89.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCcee
Q 041922           33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANC  112 (523)
Q Consensus        33 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~  112 (523)
                      .+.+|+||||+|+..|+.++++.|++ +     .+++.+|..|+||||+|+..|+.+++++|+++|++++.         
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~-----~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~---------  104 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-D-----RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH---------  104 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-T-----SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC---------
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-c-----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc---------
Confidence            35577888888888888888888887 3     34788888888888888888888888888888776522         


Q ss_pred             EeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCc
Q 041922          113 SWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNA  192 (523)
Q Consensus       113 l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (523)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (183)
T 3deo_A          105 --------------------------------------------------------------------------------  104 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhHHHHHHHHHHhccccc-CCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCch
Q 041922          193 RDETATAAVQELKFMKKKDQQS-GRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQT  264 (523)
Q Consensus       193 ~~~~~~~~~~~v~~Ll~~~~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~  264 (523)
                                          ++ ..|.||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|++.++.
T Consensus       105 --------------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A          105 --------------------RDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKT  156 (183)
T ss_dssp             --------------------CCSSSSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHHT
T ss_pred             --------------------CCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhccC
Confidence                                22 3577888888888888888888876 778888888888888888776544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=4.6e-21  Score=184.10  Aligned_cols=127  Identities=16%  Similarity=0.134  Sum_probs=106.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhccccccc-ccccccCCChHHhHHHHc---CCHHHHHHHHhcCcccccccCCCCceeEe
Q 041922           39 TALHIAAAAGQTNIVSELVEIMGENASNV-LKIQNDRGDTALHLAAAL---GNEAMCHCMASKDRELISAADEGLANCSW  114 (523)
Q Consensus        39 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~~~~d~~G~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~  114 (523)
                      ++||.|+..|+.+.++.+++.+.+-.... ++..|..|+||||+|+..   |+.+++++|+++|+++             
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-------------  198 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-------------  198 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-------------
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-------------
Confidence            68888888899888888888765322122 666688888999999888   8888899888888766             


Q ss_pred             ccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcch
Q 041922          115 SSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARD  194 (523)
Q Consensus       115 ~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (523)
                                                                                                      
T Consensus       199 --------------------------------------------------------------------------------  198 (278)
T 1dcq_A          199 --------------------------------------------------------------------------------  198 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhcc
Q 041922          195 ETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRK  274 (523)
Q Consensus       195 ~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  274 (523)
                                      +.+|..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus       199 ----------------n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          199 ----------------DKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             ----------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------------cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                            23455689999999999999999999996 8999999999999999999999999999999998


Q ss_pred             c
Q 041922          275 M  275 (523)
Q Consensus       275 ~  275 (523)
                      +
T Consensus       262 a  262 (278)
T 1dcq_A          262 S  262 (278)
T ss_dssp             T
T ss_pred             C
Confidence            7

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=7.3e-21  Score=189.15  Aligned_cols=150  Identities=17%  Similarity=0.159  Sum_probs=114.3

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHHhcccccccccccc--cCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCce
Q 041922           35 RSGDTALHIAAAA-GQTNIVSELVEIMGENASNVLKIQN--DRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLAN  111 (523)
Q Consensus        35 ~~g~T~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~~d--~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l  111 (523)
                      ..+.|+||.|+.. |+.++++.|++.|.     +++..|  ..|.||||+|+..|+.+++++|+++|+++          
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga-----dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv----------  261 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGA-----DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV----------  261 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTC-----CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCC-----CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC----------
Confidence            3456899999999 99999999999864     478887  89999999999999999999999998876          


Q ss_pred             eEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCC
Q 041922          112 CSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGN  191 (523)
Q Consensus       112 ~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (523)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (368)
T 3jue_A          262 --------------------------------------------------------------------------------  261 (368)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHH
Q 041922          192 ARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL  271 (523)
Q Consensus       192 ~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  271 (523)
                                         +..|..|.||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|+..++.+++++|+
T Consensus       262 -------------------n~~d~~G~TpLh~A~~~g~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl  321 (368)
T 3jue_A          262 -------------------NQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTLLR  321 (368)
T ss_dssp             -------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             -------------------CCCCCCCCCHHHHHHHcCcHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence                               23445689999999999999999999997 8999999999999999999999999999999


Q ss_pred             hccccCCccccccccccCCCCcHhHHHHHhCC
Q 041922          272 DRKMLGESDLNIFEHVDIKGNSALHLAAKFGE  303 (523)
Q Consensus       272 ~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  303 (523)
                      +.+....    .....+..|.|+++++.....
T Consensus       322 ~~~~~~~----~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          322 LAKMREA----EAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             HHHC----------------------------
T ss_pred             HcCCCcc----cccccCCCCCCHHHHHHHHHh
Confidence            8875321    455677889999998876543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=5.4e-21  Score=180.19  Aligned_cols=55  Identities=11%  Similarity=0.097  Sum_probs=36.8

Q ss_pred             HHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          203 ELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       203 ~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      ++++|+++    +.+|..|.||||+|+..++                  +..+.||||+|+..|+.+++++|++++.
T Consensus       126 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          126 VVEALVELGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            44444444    4455667888888875221                  2567888888888888888888887654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=2.7e-20  Score=153.57  Aligned_cols=75  Identities=23%  Similarity=0.216  Sum_probs=67.9

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCC
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                      .|..|.||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+..++.+++++|+++|+       ++|.++..|.
T Consensus        38 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga-------~~n~~~~~~~  109 (115)
T 2l6b_A           38 RSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-------DVNARSWGSS  109 (115)
T ss_dssp             CCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSS-------SHHHHSCCCC
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-------CCCcCCcccc
Confidence            344688999999999999999999997 89999999999999999999999999999999999       9999999999


Q ss_pred             cHh
Q 041922          293 SAL  295 (523)
Q Consensus       293 TpL  295 (523)
                      ||-
T Consensus       110 ~~~  112 (115)
T 2l6b_A          110 HHH  112 (115)
T ss_dssp             ---
T ss_pred             ccc
Confidence            984

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=3e-20  Score=184.69  Aligned_cols=114  Identities=19%  Similarity=0.165  Sum_probs=81.8

Q ss_pred             CCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcH
Q 041922          215 GRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSA  294 (523)
Q Consensus       215 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~Tp  294 (523)
                      ..|.||||+|+..|+.+++++|+++ |++++..|.+|+||||+|+..|+.+++++|+++|+       +++.+|.+|+||
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Ga-------d~~~~d~~G~Tp  304 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHATILGHTGLACLFLKRGA-------DLGARDSEGRDP  304 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-------CTTCCCTTSCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcC-------CCCCcCCCCCCH
Confidence            4689999999999999999999997 99999999999999999999999999999999999       999999999999


Q ss_pred             hHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhh-CCcccccccCCCCCChhHHhhhh
Q 041922          295 LHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKES-MPRYFFLGYNNKGKTPKEIFTKT  352 (523)
Q Consensus       295 LH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~-~~~~~~~~~n~~G~Tpl~la~~~  352 (523)
                      ||+|+..++.+++.                .+... .........+..+.|+++++...
T Consensus       305 L~~A~~~g~~~iv~----------------lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          305 LTIAMETANADIVT----------------LLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHHTTCHHHHH----------------HHHHHHC----------------------
T ss_pred             HHHHHHCCCHHHHH----------------HHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999966531                11111 11111345677899999998764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=9.4e-20  Score=144.19  Aligned_cols=62  Identities=26%  Similarity=0.386  Sum_probs=50.8

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      +|..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+.+|+.+++++|+++|+
T Consensus        31 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           31 KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            344578888888888888888888886 78888888888888888888888888888888876

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=6.9e-20  Score=175.87  Aligned_cols=93  Identities=25%  Similarity=0.267  Sum_probs=83.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcc----ccccCCCCCcHHHHHHHc---CCHHHHHHHHHHhcccccccccccccCCC
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSR----EAKLTRSGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKIQNDRGD   76 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~----~~~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~   76 (523)
                      .+|+.|+..|+.+.+..++.......    ++..|..|.||||+|+..   |+.+++++|++.|.     ++|.+|.+|+
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga-----~in~~d~~g~  206 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-----NLDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-----CTTCCCTTCC
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCC-----CccccCCCCC
Confidence            57999999999999999999854432    455688999999999999   99999999999864     5999999999


Q ss_pred             hHHhHHHHcCCHHHHHHHHhcCccc
Q 041922           77 TALHLAAALGNEAMCHCMASKDREL  101 (523)
Q Consensus        77 TpLh~A~~~g~~~iv~~Ll~~~~~~  101 (523)
                      ||||+|+..|+.+++++|+++|+++
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~gad~  231 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGKASI  231 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999876

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.80  E-value=2.1e-19  Score=187.29  Aligned_cols=92  Identities=17%  Similarity=0.171  Sum_probs=83.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccc------CCCCCcHHHHHHH---cCCHHHHHHHHHHhccccccccccccc
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKL------TRSGDTALHIAAA---AGQTNIVSELVEIMGENASNVLKIQND   73 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~------~~~g~T~Lh~Aa~---~g~~~~v~~Ll~~~~~~~~~~~~~~d~   73 (523)
                      .+.||.|+..|+.+.++.++..  +.+++..      |..|.||||+|+.   .|+.+++++|++.|.     ++|.+|.
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga-----~vn~~d~  205 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG-----HLDAKAA  205 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC-----CTTCCCS
T ss_pred             HHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCC-----CCCccCC
Confidence            3579999999999999999998  5566655      8899999999966   999999999999874     5999999


Q ss_pred             CCChHHhHHHHcCCHHHHHHHHhcCccc
Q 041922           74 RGDTALHLAAALGNEAMCHCMASKDREL  101 (523)
Q Consensus        74 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~  101 (523)
                      +|+||||+|+..|+.+++++|+++|+++
T Consensus       206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~  233 (497)
T 3lvq_E          206 DGNTALHYAALYNQPDCLKLLLKGRALV  233 (497)
T ss_dssp             SSCCHHHHHTTTTCHHHHHHHHHTCCCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999876

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=2.4e-19  Score=147.82  Aligned_cols=109  Identities=24%  Similarity=0.305  Sum_probs=95.8

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCce
Q 041922           32 KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLAN  111 (523)
Q Consensus        32 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l  111 (523)
                      .+|.+|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+++|+++          
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------   68 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGA-----DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV----------   68 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTC-----CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT----------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC----------
Confidence            468899999999999999999999998763     58999999999999999999999999999998765          


Q ss_pred             eEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCC
Q 041922          112 CSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGN  191 (523)
Q Consensus       112 ~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (523)
                                                                                                      
T Consensus        69 --------------------------------------------------------------------------------   68 (115)
T 2l6b_A           69 --------------------------------------------------------------------------------   68 (115)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHH
Q 041922          192 ARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLV  255 (523)
Q Consensus       192 ~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  255 (523)
                                         +.+|..|.||||+|+..|+.+++++|+++ |++++..+..|.+|-
T Consensus        69 -------------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           69 -------------------NARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH  112 (115)
T ss_dssp             -------------------TCCCTTCCCTTHHHHTTTCHHHHHHHHTT-SSSHHHHSCCCC---
T ss_pred             -------------------cccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCccccccc
Confidence                               22344688999999999999999999997 999999999999873

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=2.4e-19  Score=141.78  Aligned_cols=83  Identities=29%  Similarity=0.404  Sum_probs=78.2

Q ss_pred             CCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHh
Q 041922          216 RKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSAL  295 (523)
Q Consensus       216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpL  295 (523)
                      +|+||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+|||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------~~~~~d~~g~t~l   72 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-------DVNAKDKNGRTPL   72 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSCCHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CCCccCCCCCCHH
Confidence            489999999999999999999997 89999999999999999999999999999999999       9999999999999


Q ss_pred             HHHHHhCCCCC
Q 041922          296 HLAAKFGEYGP  306 (523)
Q Consensus       296 H~Aa~~~~~~~  306 (523)
                      |+|+..++.++
T Consensus        73 ~~A~~~~~~~~   83 (93)
T 1n0q_A           73 HLAARNGHLEV   83 (93)
T ss_dssp             HHHHHTTCHHH
T ss_pred             HHHHHcCCHHH
Confidence            99999998654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=1.3e-17  Score=136.27  Aligned_cols=88  Identities=19%  Similarity=0.233  Sum_probs=80.5

Q ss_pred             ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCC
Q 041922          211 DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIK  290 (523)
Q Consensus       211 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~  290 (523)
                      ...+.+|.||||+|+..|+.+++++|++. +++++.+|..|+||||+|+.+|+.+++++|+++|+       +++.+|.+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga-------~~~~~d~~   89 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA-------DVXAQDKF   89 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTT
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------CccccccC
Confidence            34577899999999999999999999997 89999999999999999999999999999999999       99999999


Q ss_pred             CCcHhHHHHHhCCCCC
Q 041922          291 GNSALHLAAKFGEYGP  306 (523)
Q Consensus       291 G~TpLH~Aa~~~~~~~  306 (523)
                      |+||||+|+..++.++
T Consensus        90 g~tpl~~A~~~~~~~~  105 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDL  105 (110)
T ss_dssp             SCCHHHHHHHHTCHHH
T ss_pred             CCcHHHHHHHcCCHHH
Confidence            9999999999998554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=5.8e-17  Score=132.39  Aligned_cols=56  Identities=21%  Similarity=0.351  Sum_probs=45.2

Q ss_pred             cCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHH
Q 041922          214 SGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLL  270 (523)
Q Consensus       214 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~L  270 (523)
                      |..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+.+|+.+++++|
T Consensus        54 d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           54 DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            44577888888888888888888886 788888888888888888888888888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	523
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.003
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 2e-11
 Identities = 45/249 (18%), Positives = 82/249 (32%), Gaps = 10/249 (4%)

Query: 31  AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
             +T  GDTALH+A        +  L+          L +QND G TALHLAA LG  + 
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGH-EYLDLQNDLGQTALHLAAILGEAST 60

Query: 91  CHCMASKDRELISAADEGLANC--SWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDS 148
              + +    ++ A   G      +             + R ++    ++D +   S+D 
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP-RDASDTYLTQSQDC 119

Query: 149 RPDKDGDTFSVPETP-PVLENDQIFQSRNICLESAVA---VHNKDGNARDETATAAVQEL 204
            PD      +V   P P  E +   +   + LE+                +     +   
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 205 KFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQT 264
                   +     TP+ +A +     ++E +L              +  +  A+     
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNP 238

Query: 265 GIYKLLLDR 273
            + +LL   
Sbjct: 239 ILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 247 LDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP 306
           +  +    + LAV ++       LL       +     +  +  G +ALHLAA  GE   
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFS----AGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 307 WRIPGAALQMQWEIKWYKF 325
                AA       +    
Sbjct: 61  VEKLYAAGAGVLVAERGGH 79

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 8e-11
 Identities = 21/202 (10%), Positives = 55/202 (27%), Gaps = 4/202 (1%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           GD+ LH+A    +  +  E++  +  + + +   QN+   T LHLA       +   +  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 97  KDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDT 156
              +       G      +             +        +     +            
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 157 FSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGR 216
                   +L +     +         A+H        +  +  ++    + +   Q G 
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ-GY 179

Query: 217 KATPILIAAKMGVTEMVEKILD 238
             +P  +      T + +++  
Sbjct: 180 --SPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 1   MEVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIM 60
              +     A    +   V+   +      A+   +G TALH+A      ++VS L++  
Sbjct: 109 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 168

Query: 61  GENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADE 107
            +           +G +   L     +  +   +     E +    E
Sbjct: 169 ADV-----NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 210

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 38/277 (13%), Positives = 87/277 (31%), Gaps = 24/277 (8%)

Query: 38  DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASK 97
           ++ + +   A  +  ++E +     N      I      T LH  A+  +      +   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI-----IDPRHNRTVLHWIASNSSAEKSEDLIVH 55

Query: 98  D-RELISA-AD------EGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSR 149
           + +E I+A AD      +       +      +      +        N     +   + 
Sbjct: 56  EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA 115

Query: 150 PDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT----AAVQELK 205
            ++D            L+ D     RN      +  HN+  +            A  +  
Sbjct: 116 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 175

Query: 206 FMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTG 265
              +KD +  +  T +  AA++    +V+ ++          D + K  ++LA +  +  
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 266 IYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFG 302
           +   L+ +     + +     VD   ++A  LA    
Sbjct: 236 VVMYLIQQG----ASVEA---VDATDHTARQLAQANN 265

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 11  MRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI 70
            +      V+       S + K    G T + +AA  G+  +V  L++  G +    ++ 
Sbjct: 195 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGAS----VEA 249

Query: 71  QNDRGDTALHLAAALGNEAM 90
            +    TA  LA A  +  +
Sbjct: 250 VDATDHTARQLAQANNHHNI 269

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 35/266 (13%), Positives = 66/266 (24%), Gaps = 47/266 (17%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
           GDT LHIA   G    V  LV +  +    +  I N+   T LHLA      ++   +  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLL-- 59

Query: 97  KDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDT 156
                             S   L+                +       S           
Sbjct: 60  -------------VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 106

Query: 157 FSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGR 216
                T   +  +   Q     L                        L+     D    +
Sbjct: 107 NYDGLTALHVAVNTECQETVQLL------------------------LERGADIDAVDIK 142

Query: 217 KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKML 276
                LI A    +  + ++L      ++       + +  A       + + L+     
Sbjct: 143 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-- 200

Query: 277 GESDLNIFEHVDIKGNSALHLAAKFG 302
             +D ++    +   ++ L +A    
Sbjct: 201 --ADSSL---KNCHNDTPLMVARSRR 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 25/236 (10%), Positives = 65/236 (27%), Gaps = 11/236 (4%)

Query: 38  DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASK 97
           +  LH A    +   V EL+          L  ++  G   LH + +     +   + SK
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSL----LLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

Query: 98  DRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTF 157
              +        +  +              K      L  + +   +   +         
Sbjct: 57  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 116

Query: 158 SVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRK 217
               +  ++EN    + ++   +  +                 +         + Q  + 
Sbjct: 117 WFEVSQFLIENGASVRIKDKFNQIPLHRAAS----VGSLKLIELLCGLGKSAVNWQDKQG 172

Query: 218 ATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDR 273
            TP+  A   G  +    +++        +D++      +A+  +   + K  L+ 
Sbjct: 173 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFLNN 225

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 59.9 bits (144), Expect = 2e-10
 Identities = 31/269 (11%), Positives = 73/269 (27%), Gaps = 33/269 (12%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
            +    +AA  G ++ + + + ++  +   V K+       A  LAA  G+  + + +  
Sbjct: 90  SEVICFVAAITGCSSAL-DTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCE 147

Query: 97  K--DRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDG 154
                 +     E       ++   E+   H   R   +  +      ++          
Sbjct: 148 LAPTEIMAMIQAENYHAFRLAA---ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 204

Query: 155 DTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQS 214
                      L            L+  V +   + +  +         +     +    
Sbjct: 205 VGRGHHNVINFL------------LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL--- 249

Query: 215 GRKATPILIAAKMGVTEMVEKILDTIPV-AIHDLDSEKKNLVLLAVENRQTGIYKLLLDR 273
                   ++   GV ++V K         + +L        +   +       + LL  
Sbjct: 250 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL--------IRRNDEVLLDDIRFLL-- 299

Query: 274 KMLGESDLNIFEHVDIKGNSALHLAAKFG 302
            + G   L     +    N  L LA + G
Sbjct: 300 SIPGIKALAPTATIPGDANELLRLALRLG 328

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 12/55 (21%), Positives = 17/55 (30%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMC 91
               L         + +  L+ I G  A           +  L LA  LGN+  C
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 333

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 1e-09
 Identities = 41/270 (15%), Positives = 87/270 (32%), Gaps = 14/270 (5%)

Query: 37  GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
            +  L  A      ++V +L+E      +NV   + + G T LH A  +  E +   +  
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 97  KDRELISAADEGLANCSWSS--GNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDG 154
              + +     G      ++  G+++  +    K                          
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 155 DTFSVPETPPVLENDQIFQSRNICLES-AVAVHNKDGNARDETATAAVQELKF-MKKKDQ 212
             F       V    +  + +    +  A A+ +       E     + E+   +   D 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLD 272
                    L+++     E +  +L      ++      K  ++LAVE +  G+ + LL+
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240

Query: 273 RKMLGESDLNIFEHVDIKGNSALHLAAKFG 302
           +      ++N     D  G +AL LA +  
Sbjct: 241 Q---EHIEIND---TDSDGKTALLLAVELK 264

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
              G T L +A       +V  L+E         +   +  G TAL LA  L  + +   
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAEL 271

Query: 94  MASK 97
           +  +
Sbjct: 272 LCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 49/252 (19%), Positives = 87/252 (34%), Gaps = 16/252 (6%)

Query: 30  EAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEA 89
             +    G T LH A    + +IV  L+    +                  LAA  G+  
Sbjct: 32  NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF-----LLAAIAGSVK 86

Query: 90  MCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSR 149
           +     SK  ++      G      ++   + K      +        N          R
Sbjct: 87  LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN---VNLRRKTKEDQER 143

Query: 150 PDKDGDTF----SVPETPPVLEN--DQIFQSRNICLESAVAVHNKDGNARDETATAAVQE 203
             K G T     +      VL+   D++    N C             + D++   A+  
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 204 --LKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVEN 261
             L      + +  R  TP+++A +     +V+++L+   + I+D DS+ K  +LLAVE 
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263

Query: 262 RQTGIYKLLLDR 273
           +   I +LL  R
Sbjct: 264 KLKKIAELLCKR 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 29/273 (10%)

Query: 28  SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
            ++ K+          A ++G T  V  L+    E  +++    N  G TALH A    N
Sbjct: 31  RKKTKVKFDDGAVFLAACSSGDTEEVLRLL----ERGADI-NYANVDGLTALHQACIDDN 85

Query: 88  EAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRD 147
             M   +                  + +  + E                +     + +  
Sbjct: 86  VDMVKFLVEN-------------GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 148 SRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFM 207
              + +GDT          E  +      +  +       +    R     A        
Sbjct: 133 GAVNSEGDTP---LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189

Query: 208 KKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIY 267
               + +    T + +AA  G TE++ K+L      ++  D +    +  A    +    
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 268 KLLLDRKMLGESDLNIFEHVDIKGNSALHLAAK 300
           ++L++       D+     V+  G +A  +A +
Sbjct: 249 RILVENL----CDMEA---VNKVGQTAFDVADE 274

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 4e-09
 Identities = 50/319 (15%), Positives = 90/319 (28%), Gaps = 57/319 (17%)

Query: 34  TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
               +T LH+AA AG T +   L+    +N + V   +     T LH AA +G+  M   
Sbjct: 30  NVKVETPLHMAARAGHTEVAKYLL----QNKAKV-NAKAKDDQTPLHCAARIGHTNMVKL 84

Query: 94  MASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKS--------- 144
           +   +    + A          +      E            +     G +         
Sbjct: 85  LLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 143

Query: 145 ---------SRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGN---- 191
                     RD+ P+  G     P    V  N+       +    +      +G     
Sbjct: 144 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 203

Query: 192 --ARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDS 249
             A+      A   L++    + +S +  TP+ +AA+ G  EMV  +  +     +  + 
Sbjct: 204 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL-LSKQANGNLGNK 262

Query: 250 EKKNLVLLAVENRQTGIYKLLLDRK--------------------------MLGESDLNI 283
                + L  +     +  +L+                                      
Sbjct: 263 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 322

Query: 284 FEHVDIKGNSALHLAAKFG 302
                  G S LH AA+ G
Sbjct: 323 VNAKTKLGYSPLHQAAQQG 341

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 5e-08
 Identities = 45/264 (17%), Positives = 92/264 (34%), Gaps = 23/264 (8%)

Query: 39  TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKD 98
           T LH+A+  G   IV  L+    +  ++   + N + +T LH+AA  G+  +   +    
Sbjct: 2   TPLHVASFMGHLPIVKNLL----QRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNK 56

Query: 99  RELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFS 158
            ++ + A +       ++        H       +  ++N +   ++  +          
Sbjct: 57  AKVNAKAKDDQTPLHCAARI-----GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH 111

Query: 159 VPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKA 218
           V     +LE +           + + V  K G  R      A   L+     +       
Sbjct: 112 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR-----VAELLLERDAHPNAAGKNGL 166

Query: 219 TPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE 278
           TP+ +A      ++V K+L     + H         + +A +  Q  + + LL       
Sbjct: 167 TPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG--- 222

Query: 279 SDLNIFEHVDIKGNSALHLAAKFG 302
                     ++G + LHLAA+ G
Sbjct: 223 ----SANAESVQGVTPLHLAAQEG 242

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 44/291 (15%), Positives = 83/291 (28%), Gaps = 27/291 (9%)

Query: 14  QWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQND 73
           +             + +A +T+ G T LH+AA  G+  +   L+E               
Sbjct: 109 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-----PNAAGK 163

Query: 74  RGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYM 133
            G T LH+A    N  +   +  +      +           +      E  R       
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

Query: 134 GLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNAR 193
             ++    G +       +                +   +S    L       +      
Sbjct: 223 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP---- 278

Query: 194 DETATAAVQE--LKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEK 251
                  V +  +K     D  +    TP+ +A+  G  ++V K L      ++      
Sbjct: 279 -------VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLG 330

Query: 252 KNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFG 302
            + +  A +   T I  LLL       +  N    V   G + L +A + G
Sbjct: 331 YSPLHQAAQQGHTDIVTLLLKNG----ASPNE---VSSDGTTPLAIAKRLG 374

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 11  MRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKI 70
                   V+    +     AK T+ G + LH AA  G T+IV+ L+    +N ++    
Sbjct: 305 SHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLL----KNGASP-NE 358

Query: 71  QNDRGDTALHLAAALGNEAMC 91
            +  G T L +A  LG  ++ 
Sbjct: 359 VSSDGTTPLAIAKRLGYISVT 379

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 219 TPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE 278
           TP+ +A+ MG   +V+ +L     + +  + + +  + +A     T + K LL  K    
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK---- 56

Query: 279 SDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYFFLGY 338
           + +N          + LH AA+ G     ++    L+             +         
Sbjct: 57  AKVNA---KAKDDQTPLHCAARIGHTNMVKLL---LENNANPNLATTAGHTPLHIAAREG 110

Query: 339 NNKGKTPKEIFTKTHKELVKDGQEWLSRTSES 370
           + +          +   + K G   L   ++ 
Sbjct: 111 HVETVLALLEKEASQACMTKKGFTPLHVAAKY 142

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 6e-06
 Identities = 31/273 (11%), Positives = 73/273 (26%), Gaps = 39/273 (14%)

Query: 31  AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           +     G ++          +++ E+ +       N+    ++ G+T LH   ++ N  +
Sbjct: 63  SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLEL 122

Query: 91  CHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRP 150
                   + L+       +N  +     E       K        + +           
Sbjct: 123 V-------KHLVKHG----SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 171

Query: 151 DKDGDTFSVPETPPVLENDQ--IFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMK 208
            +D    +      ++ +       +    L+  +    K  N   ++ T          
Sbjct: 172 LEDSMNRT-ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE-------- 222

Query: 209 KKDQQSGRKATPILIAAKMGVTEMVEKIL--DTIPVAIHDLDSEKKNLVLLAVENRQTGI 266
                   K +            ++E +     I   ++  DS     + +A       I
Sbjct: 223 --------KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 267 YKLLLDRKMLGESDLNIFEHVDIKGNSALHLAA 299
              LLD      +D  I    +  G   +   A
Sbjct: 275 VDALLDYG----ADPFI---ANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 10  AMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK 69
           A +   D  +              T   ++  +      + +I+  L   +    +N+L 
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL--DLKWIIANMLN 253

Query: 70  IQNDRGDTALHLAAALGNEAMCHCMASK 97
            Q+  GDT L++AA LGN ++   +   
Sbjct: 254 AQDSNGDTCLNIAARLGNISIVDALLDY 281

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 33/229 (14%), Positives = 70/229 (30%), Gaps = 28/229 (12%)

Query: 10  AMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLK 69
           +          A+ N  ++    +   G+T LH   +     +V  LV+  G N      
Sbjct: 80  SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSN----RL 134

Query: 70  IQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKR 129
             ++ G++ L  A    N        +    L                 L  ++      
Sbjct: 135 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--------------CLILEDSMNRTI 180

Query: 130 GTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKD 189
             ++ ++S      ++     D              +   Q    ++   E     ++K+
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMG---------WIVKKQNRPIQSGTNEKESKPNDKN 231

Query: 190 GNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILD 238
           G  +D        +       + Q     T + IAA++G   +V+ +LD
Sbjct: 232 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 280

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 224 AAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNI 283
           AAK  +  ++  I+      I    +EK++        R+  I + L  + ++    LN 
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN-MLN- 253

Query: 284 FEHVDIKGNSALHLAAKFG 302
               D  G++ L++AA+ G
Sbjct: 254 --AQDSNGDTCLNIAARLG 270

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 37/263 (14%), Positives = 74/263 (28%), Gaps = 55/263 (20%)

Query: 38  DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASK 97
           +  +   A +G+   + E +      A+      +    TALH A + G+  +   +   
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLAT----RTDQDSRTALHWACSAGHTEIVEFLLQL 59

Query: 98  DRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTF 157
              +                 L               L            +  +++G T 
Sbjct: 60  GVPVND-------KDDAGWSPLHIAASAGRDEIVKALLGKGAQV------NAVNQNGCT- 105

Query: 158 SVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRK 217
                                      +H      R E A      L+     D +   +
Sbjct: 106 --------------------------PLHYAASKNRHEIAVML---LEGGANPDAKDHYE 136

Query: 218 ATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLG 277
           AT +  AA  G    +  IL     + +  D+E    + LA +  +    KLL+ +    
Sbjct: 137 ATAMHRAAAKG-NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG--- 192

Query: 278 ESDLNIFEHVDIKGNSALHLAAK 300
            + + I    + +  + L +A  
Sbjct: 193 -ASIYI---ENKEEKTPLQVAKG 211

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 24/209 (11%), Positives = 62/209 (29%), Gaps = 17/209 (8%)

Query: 31  AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
           A + ++G+T+LH+AA   + +    L++   +  S     +                  +
Sbjct: 17  ATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA-----DAMGV 71

Query: 91  CHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRP 150
              +       ++A           +  L  +    +       +++ D+ GK++     
Sbjct: 72  FQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAA 131

Query: 151 DKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQEL-KFMKK 209
             +               D         L  A    + +          A + L      
Sbjct: 132 AVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE----------ASKALLDNFAN 181

Query: 210 KDQQSGRKATPILIAAKMGVTEMVEKILD 238
           ++        P  +A++    ++V ++LD
Sbjct: 182 REITDHMDRLPRDVASERLHHDIV-RLLD 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	523
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.98
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.91
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-36  Score=300.96  Aligned_cols=313  Identities=15%  Similarity=0.102  Sum_probs=235.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .|||.||..|+.+.|+.++++  +.+++..|..|+||||+|+..|+.+++++|++.|.     +++.+|.+|+||||+|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~--g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-----di~~~~~~g~t~L~~A~   74 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-----KVNAKAKDDQTPLHCAA   74 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC-----CSSCCCTTSCCHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcC-----CCCCCCCCCCCHHHHHH
Confidence            489999999999999999998  67888999999999999999999999999999874     48999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCC--------------------------------c--eeEeccCCccc-chhhhhh
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGL--------------------------------A--NCSWSSGNLED-KEHHREK  128 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~--------------------------------~--l~l~~~~~~~~-v~~l~~~  128 (523)
                      ..|+.+++++|+..+++.........                                .  +..+...++.+ ++.|+++
T Consensus        75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~  154 (408)
T d1n11a_          75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  154 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999987665433322221                                1  22222223333 3667776


Q ss_pred             cCCccCCccCCCCCCCccccCCCCCCCC-c-cCCCCCCCCC----ccccchhhhHH---HHHHHHhhc-------cCCCc
Q 041922          129 RGTYMGLSSNDDHGKSSRDSRPDKDGDT-F-SVPETPPVLE----NDQIFQSRNIC---LESAVAVHN-------KDGNA  192 (523)
Q Consensus       129 ~~~~~~l~~~d~~g~tpLh~a~~~~~~~-~-~~l~~~~~~~----~~~~~~~~~~~---~~~~~~l~~-------~~~~~  192 (523)
                         +.+++..+.+|.+|||.|+..+... . .+++++.+..    .+..+.++...   ......+..       .+..+
T Consensus       155 ---~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  231 (408)
T d1n11a_         155 ---DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  231 (408)
T ss_dssp             ---TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             ---CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCC
Confidence               8889999999999999877533222 2 3344443332    22222222211   111122211       11122


Q ss_pred             chhhhh----HHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCch
Q 041922          193 RDETAT----AAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQT  264 (523)
Q Consensus       193 ~~~~~~----~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~  264 (523)
                      .++.+.    ...++++.+++.    +..+..|.|||+.|+..++.+++++|+++ |++++..+..+.||||.|+..++.
T Consensus       232 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~~~~~~~  310 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNI  310 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             CCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHC-CCccccccccccccchhhcccCcc
Confidence            223222    235577777776    56678899999999999999999999997 899999999999999999999999


Q ss_pred             hHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCC
Q 041922          265 GIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGK  343 (523)
Q Consensus       265 ~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~  343 (523)
                      ++++++++.|+       ++|.+|.+|+||||+|++.|+.++                   ++.++..++ ++.+|++|+
T Consensus       311 ~~~~~ll~~g~-------~in~~d~~G~T~Lh~A~~~g~~~i-------------------v~~Ll~~GAd~n~~d~~G~  364 (408)
T d1n11a_         311 KLVKFLLQHQA-------DVNAKTKLGYSPLHQAAQQGHTDI-------------------VTLLLKNGASPNEVSSDGT  364 (408)
T ss_dssp             HHHHHHHHTTC-------CTTCCCTTSCCHHHHHHHTTCHHH-------------------HHHHHHTTCCSCCCCSSSC
T ss_pred             eeeeeeccccc-------cccccCCCCCCHHHHHHHcCCHHH-------------------HHHHHHCCCCCCCCCCCCC
Confidence            99999999999       999999999999999999998654                   333344444 689999999


Q ss_pred             ChhHHhhhhh
Q 041922          344 TPKEIFTKTH  353 (523)
Q Consensus       344 Tpl~la~~~~  353 (523)
                      ||+|+|.+..
T Consensus       365 t~L~~A~~~~  374 (408)
T d1n11a_         365 TPLAIAKRLG  374 (408)
T ss_dssp             CHHHHHHHTT
T ss_pred             CHHHHHHHcC
Confidence            9999999864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=259.53  Aligned_cols=92  Identities=24%  Similarity=0.374  Sum_probs=81.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      ..++.+|.+|+.+.+++++..+ +...+.+|.+|+||||+||..|+.+++++|++.+.     .....+..+.++++.|+
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~-----~~~~~~~~~~~~~~~~~   78 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV-----PVNDKDDAGWSPLHIAA   78 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-----CSCCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhccccccccccc-----ccccccccccccccccc
Confidence            4577899999999999999987 45678899999999999999999999999999864     36677888999999999


Q ss_pred             HcCCHHHHHHHHhcCccc
Q 041922           84 ALGNEAMCHCMASKDREL  101 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~  101 (523)
                      ..|+.+++++|+++|+++
T Consensus        79 ~~~~~~i~~~Ll~~~~d~   96 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQV   96 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCT
T ss_pred             cccccchhHHHhccCcee
Confidence            999999999999987654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.5e-34  Score=268.03  Aligned_cols=227  Identities=20%  Similarity=0.191  Sum_probs=154.1

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc
Q 041922           31 AKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA  110 (523)
Q Consensus        31 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  110 (523)
                      ..+|.+|+||||+||++|+.+++++|++.+.+  ...++.+|.+|+||||+|+..|+.+++++|+++|+++         
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~--~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i---------   71 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG--HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---------   71 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT--SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---------
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCC--cccccCcCCCCCCccchHHhhcccccccccccccccc---------
Confidence            45788999999999999999999999998753  3458889999999999999999999999999987765         


Q ss_pred             eeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCC-Cc-cCCCCCCCCCccc---cchhhhHHHHHH-HH
Q 041922          111 NCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGD-TF-SVPETPPVLENDQ---IFQSRNICLESA-VA  184 (523)
Q Consensus       111 l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~-~~-~~l~~~~~~~~~~---~~~~~~~~~~~~-~~  184 (523)
                                               +.+|.+|.||||.|+..... .. .+++.........   .......+.... ..
T Consensus        72 -------------------------~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (255)
T d1oy3d_          72 -------------------------LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA  126 (255)
T ss_dssp             -------------------------SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------
T ss_pred             -------------------------cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHH
Confidence                                     55566667777755532111 11 1111111000000   000000000000 00


Q ss_pred             hhccCCCcchhhhhHHHHHHHHHHhc-----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCccc-ccccCCCcHHHHH
Q 041922          185 VHNKDGNARDETATAAVQELKFMKKK-----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIH-DLDSEKKNLVLLA  258 (523)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-~~d~~G~t~Lh~A  258 (523)
                      ...      .............+...     +.++.+|.||||+|++.|+.+++++|++. +++.+ ..+..|.||||+|
T Consensus       127 ~~~------~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~TpL~~A  199 (255)
T d1oy3d_         127 PAA------VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLA  199 (255)
T ss_dssp             -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHH
T ss_pred             HHH------HHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcc-ccccccccccccccccccc
Confidence            000      00000000000011100     56788999999999999999999999998 55555 4568899999999


Q ss_pred             HHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          259 VENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       259 ~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      ++.|+.+++++|+++|+       ++|.+|++|+||||+|+..++.+++
T Consensus       200 ~~~~~~~~v~~Ll~~ga-------din~~d~~g~t~L~~A~~~~~~~i~  241 (255)
T d1oy3d_         200 VEAQAASVLELLLKAGA-------DPTARMYGGRTPLGSALLRPNPILA  241 (255)
T ss_dssp             HHTTCHHHHHHHHHTTC-------CTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             ccccHHHHHHHHHHCCC-------CCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999       9999999999999999999996543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.3e-34  Score=276.49  Aligned_cols=251  Identities=13%  Similarity=0.086  Sum_probs=181.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccC-CCCCcHHHHHHHcCCHHHHHHHHHHhcc---cccccccccccCCChHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGE---NASNVLKIQNDRGDTAL   79 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~~~~~d~~G~TpL   79 (523)
                      +||+.++..++.+.+.+.|.+. +.+  ..+ ..|+||||+||..|+.++|+.|+.....   ..++++|.+|.+|+|||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~-~~n--~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRE-SVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTT-TTT--TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhc-CCC--cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            4677666556666666666553 333  333 4699999999999999999999876431   12357999999999999


Q ss_pred             hHHHHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCCCc
Q 041922           80 HLAAALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTF  157 (523)
Q Consensus        80 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~  157 (523)
                      |+|++.|+.+++++|+++|++++..+..+.+ ++.+...++..+ ..+.........++..+..+.++.+.+...     
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  153 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN-----  153 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS-----
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhc-----
Confidence            9999999999999999999887665555544 444444443332 222222111233444555555555433210     


Q ss_pred             cCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc------------ccccCCCChHHHHHH
Q 041922          158 SVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK------------DQQSGRKATPILIAA  225 (523)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~------------~~~~~~g~tpLh~Aa  225 (523)
                                                            ........+..+.+.            +..+..|.||||+++
T Consensus       154 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~  195 (277)
T d2fo1e1         154 --------------------------------------EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA  195 (277)
T ss_dssp             --------------------------------------CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHH
T ss_pred             --------------------------------------ccccccccccccccccccccccccccccccccCCCCcccccc
Confidence                                                  000111122222222            455678999999999


Q ss_pred             HcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCC
Q 041922          226 KMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYG  305 (523)
Q Consensus       226 ~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~  305 (523)
                      ..++.+++++++...+.+.+.+|..|+||||+|+++|+.+++++|+++|+       ++|.+|.+|+||||+|++.|+.+
T Consensus       196 ~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga-------din~~d~~G~T~L~~A~~~~~~~  268 (277)
T d2fo1e1         196 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-------SVEAVDATDHTARQLAQANNHHN  268 (277)
T ss_dssp             SSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-------CSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             ccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC-------CCCCcCCCCCCHHHHHHHcCCHH
Confidence            99999999998887799999999999999999999999999999999999       99999999999999999999966


Q ss_pred             Cc
Q 041922          306 PW  307 (523)
Q Consensus       306 ~~  307 (523)
                      ++
T Consensus       269 iv  270 (277)
T d2fo1e1         269 IV  270 (277)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=3.6e-32  Score=261.61  Aligned_cols=225  Identities=17%  Similarity=0.190  Sum_probs=178.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      +.+|+.||..|+.+.|+.||++  |.+++.+|.+|.||||+|+..|+.++|++|++.+.     .....+..+.||||.|
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~-----~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGA-----NINQPDNEGWIPLHAA  113 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcHHHHHHhcCCceeeeeeccccc-----cccccccccccccccc
Confidence            5679999999999999999998  67888899999999999999999999999999864     3677788899999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.++++.|+++|...                                  +..|.+|.+|++.|+.           
T Consensus       114 ~~~~~~~~~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~a~~-----------  148 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHV----------------------------------GAVNSEGDTPLDIAEE-----------  148 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCT----------------------------------TCCCTTSCCHHHHCCS-----------
T ss_pred             ccccccchhhcccccCccc----------------------------------ccccccCccccccccc-----------
Confidence            9999999999999887543                                  5667888899887762           


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchh-hhh----HHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHH
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDE-TAT----AAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMV  233 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~----~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v  233 (523)
                                   ......+..+.+..+..... ...    ........+...    ...+..|.||||.|+..|+.+++
T Consensus       149 -------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  215 (291)
T d1s70b_         149 -------------EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL  215 (291)
T ss_dssp             -------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHH
T ss_pred             -------------cccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhh
Confidence                         22233333333222221100 000    001111222211    44567899999999999999999


Q ss_pred             HHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHH
Q 041922          234 EKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAK  300 (523)
Q Consensus       234 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~  300 (523)
                      +.|++. |++++.+|.+|+||||+|++.|+.++|++|+++|+       ++|.+|++|+||||+|++
T Consensus       216 ~~Ll~~-g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga-------dv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         216 KLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC-------DMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSCCTTTSCCS
T ss_pred             cccccc-eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC-------CCCCcCCCCCCHHHHHHH
Confidence            999996 89999999999999999999999999999999999       999999999999999975

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.7e-32  Score=258.69  Aligned_cols=220  Identities=14%  Similarity=0.106  Sum_probs=170.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPM-SREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~-~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      .+||.||..|+.+.++.|++.... ..++.+|..|+||||+||..|+.+++++|++.|.     +++.+|.+|.||||+|
T Consensus        11 t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga-----~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_          11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA-----GVLVAERGGHTALHLA   85 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CSSCCCTTSCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccc-----cccccccccchhhhhh
Confidence            579999999999999999987322 2267788999999999999999999999999864     5899999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCcee------------EeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANC------------SWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSR  149 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~------------l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a  149 (523)
                      +..|+.+++++|++.+..............            .......... .........+.+++.+|.+|.||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence            999999999999988654322111110000            0000000000 000001134667789999999999988


Q ss_pred             CCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc-----ccccCCCChHHHHH
Q 041922          150 PDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK-----DQQSGRKATPILIA  224 (523)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~A  224 (523)
                      +.                                              ....++++.|+++     ..++..|.||||+|
T Consensus       166 ~~----------------------------------------------~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A  199 (255)
T d1oy3d_         166 VI----------------------------------------------HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA  199 (255)
T ss_dssp             HH----------------------------------------------TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             cc----------------------------------------------ccccccccchhccccccccccccccccccccc
Confidence            62                                              1235688888876     34567899999999


Q ss_pred             HHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          225 AKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       225 a~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      ++.|+.+++++|+++ |++++.+|.+|+||||+|+.+++.+++++|+++|+
T Consensus       200 ~~~~~~~~v~~Ll~~-gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         200 VEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             HHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             ccccHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999999999996 89999999999999999999999999999999999

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.2e-32  Score=271.26  Aligned_cols=291  Identities=18%  Similarity=0.132  Sum_probs=223.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhccc--------------------
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGEN--------------------   63 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~--------------------   63 (523)
                      ++||.|+..|+.+.++.|+++  +.+++.++.+|.||||+|+..|+.++++.|++.....                    
T Consensus        35 TpL~~A~~~g~~~iv~~Ll~~--gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (408)
T d1n11a_          35 TPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV  112 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhccc
Confidence            479999999999999999998  6788899999999999999999999999999875521                    


Q ss_pred             --------ccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhcCCcc
Q 041922           64 --------ASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKRGTYM  133 (523)
Q Consensus        64 --------~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~~~~~  133 (523)
                              .....+.+|.+|.++|+.|+..++.++++.|+++|.+++..+..+.+ ++.+...++.++ ++|+.+   ++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~---g~  189 (408)
T d1n11a_         113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR---GG  189 (408)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG---TC
T ss_pred             ccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhc---CC
Confidence                    11335667889999999999999999999999999999877777666 666777776664 888887   88


Q ss_pred             CCccCCCCCCCccccCCCCCCC-Ccc-CCCCC----CCCCccccchhhh---HHHHHHHHhhcc-------CCCcchh--
Q 041922          134 GLSSNDDHGKSSRDSRPDKDGD-TFS-VPETP----PVLENDQIFQSRN---ICLESAVAVHNK-------DGNARDE--  195 (523)
Q Consensus       134 ~l~~~d~~g~tpLh~a~~~~~~-~~~-~l~~~----~~~~~~~~~~~~~---~~~~~~~~l~~~-------~~~~~~~--  195 (523)
                      +++..+..|.||+|.+...... ... ++...    .....+..+..+.   ...+.++.....       +..+..+  
T Consensus       190 ~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~  269 (408)
T d1n11a_         190 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH  269 (408)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             cccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhh
Confidence            9999999999999965431111 000 11110    0111122222221   122223332221       1112222  


Q ss_pred             --hhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHH
Q 041922          196 --TATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKL  269 (523)
Q Consensus       196 --~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~  269 (523)
                        ......+++++|+++    +..+..+.||||.|+..++.++++.+++. |++++.+|.+|+||||+|+++|+.++|++
T Consensus       270 ~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~-g~~in~~d~~G~T~Lh~A~~~g~~~iv~~  348 (408)
T d1n11a_         270 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTL  348 (408)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             hhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccc-cccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence              223346799999987    55667899999999999999999999997 89999999999999999999999999999


Q ss_pred             HHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          270 LLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       270 Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      |+++|+       ++|.+|++|+||||+|++.|+.+++
T Consensus       349 Ll~~GA-------d~n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         349 LLKNGA-------SPNEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             HHHTTC-------CSCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             HHHCCC-------CCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            999999       9999999999999999999996653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-31  Score=248.76  Aligned_cols=210  Identities=18%  Similarity=0.212  Sum_probs=179.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .|||.||..|+.+.++.+++..+ .+++.+|.+|+||||+|+..|+.+++++|++.|++  ....+..|..|.||+|+|+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN--VNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTT--CCGGGCCCTTSCCHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCCHHHHHHHcCCccccchhhhhhcc--ccccccccccccccccccc
Confidence            48999999999999999999864 46788999999999999999999999999998653  2335567889999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..+..++++.++..+...                                +....+..+.||++.++.            
T Consensus        79 ~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~l~~~~~------------  114 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKP--------------------------------DLNKITNQGVTCLHLAVG------------  114 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCC--------------------------------CTTCCCTTSCCHHHHHHH------------
T ss_pred             cccccccccccccccccc--------------------------------cccccccccccccccccc------------
Confidence            999999999998887543                                334566778888885541            


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhh
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDT  239 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~  239 (523)
                                                        ....++++.|++.    +.++..|+||||+|+..|+.++++.|++.
T Consensus       115 ----------------------------------~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_         115 ----------------------------------KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             ----------------------------------TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             ----------------------------------cchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence                                              1124577777776    56678899999999999999999999998


Q ss_pred             CCCcccccccCCCcHHHHHHHcCchhHHHHHHhc-cccCCccccccccccCCCCcHhHHHHHh
Q 041922          240 IPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDR-KMLGESDLNIFEHVDIKGNSALHLAAKF  301 (523)
Q Consensus       240 ~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~~~~~in~~d~~G~TpLH~Aa~~  301 (523)
                      .+.+++.+|.+|+||||+|+++|+.+++++|+++ |+       +++.+|++|+||||+|+..
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~ga-------d~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA-------EYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC-------CSCCCCTTSCCTGGGCSCH
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHHhcCC-------CCCCcCCCCCCHHHHHhhH
Confidence            7789999999999999999999999999999974 88       9999999999999999743

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.1e-31  Score=243.22  Aligned_cols=208  Identities=15%  Similarity=0.112  Sum_probs=172.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccC
Q 041922           38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSG  117 (523)
Q Consensus        38 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~  117 (523)
                      +||||+||..|+.++++.|++...    .+++.+|.+|+||||+|+..|+.+++++|+++|++++..             
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~----~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-------------   63 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKP----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD-------------   63 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCG----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGG-------------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCC----CcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccc-------------
Confidence            589999999999999999998642    569999999999999999999999999999998876332             


Q ss_pred             CcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhh
Q 041922          118 NLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETA  197 (523)
Q Consensus       118 ~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (523)
                                        +..|..|.+|+|.+..                                              
T Consensus        64 ------------------~~~~~~~~~~~~~~~~----------------------------------------------   79 (229)
T d1ixva_          64 ------------------DYPDDSGWTPFHIACS----------------------------------------------   79 (229)
T ss_dssp             ------------------GCCCTTSCCHHHHHHH----------------------------------------------
T ss_pred             ------------------cccccccccccccccc----------------------------------------------
Confidence                              3456788999986641                                              


Q ss_pred             hHHHHHHHHHHhc------ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHH
Q 041922          198 TAAVQELKFMKKK------DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL  271 (523)
Q Consensus       198 ~~~~~~v~~Ll~~------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  271 (523)
                      ....++++.++..      ...+..+.||++.++..++.++++.|++. +.+.+..|.+|+||||+|+.+|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhh-cccccccCCCCCCccchhhhccccccccccc
Confidence            1123355555444      34556799999999999999999999997 8899999999999999999999999999999


Q ss_pred             hccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCC-ccc-ccccCCCCCChhHHh
Q 041922          272 DRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMP-RYF-FLGYNNKGKTPKEIF  349 (523)
Q Consensus       272 ~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~-~~~-~~~~n~~G~Tpl~la  349 (523)
                      +.+..      ++|.+|.+|+||||+|+..|+.+++                   +.++. .++ ++.+|++|+||+|+|
T Consensus       159 ~~~~~------~in~~d~~g~TpLh~A~~~~~~~~v-------------------~~Ll~~~gad~~~~d~~g~t~l~~A  213 (229)
T d1ixva_         159 GLGKS------AVNWQDKQGWTPLFHALAEGHGDAA-------------------VLLVEKYGAEYDLVDNKGAKAEDVA  213 (229)
T ss_dssp             TTTCC------CSCCCCTTSCCHHHHHHHTTCHHHH-------------------HHHHHHHCCCSCCCCTTSCCTGGGC
T ss_pred             ccccc------cccccccccCCchhhhcccccHHHH-------------------HHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            99853      8899999999999999999986543                   22222 122 589999999999999


Q ss_pred             hhh
Q 041922          350 TKT  352 (523)
Q Consensus       350 ~~~  352 (523)
                      .+.
T Consensus       214 ~~~  216 (229)
T d1ixva_         214 LNE  216 (229)
T ss_dssp             SCH
T ss_pred             hhH
Confidence            854

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-30  Score=238.21  Aligned_cols=216  Identities=15%  Similarity=0.156  Sum_probs=157.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc-eeEe
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA-NCSW  114 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~  114 (523)
                      +|+||||+||..|+.++++.|++...+. ..+++.+|.+|+||||+|+..|+.+++++|+++|++.+.....+.. ...+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~-g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            6899999999999999998888754422 2468888999999999999999999999999988877666555544 3333


Q ss_pred             ccCCcccc-hhhhhhc-CCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCc
Q 041922          115 SSGNLEDK-EHHREKR-GTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNA  192 (523)
Q Consensus       115 ~~~~~~~v-~~l~~~~-~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (523)
                      ........ +...... ......+..+..+.+|||.+..                                         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------------------------  119 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN-----------------------------------------  119 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH-----------------------------------------
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccc-----------------------------------------
Confidence            33333322 2222110 1122224444555556553320                                         


Q ss_pred             chhhhhHHHHHHHHHHhc-----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHH
Q 041922          193 RDETATAAVQELKFMKKK-----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIY  267 (523)
Q Consensus       193 ~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv  267 (523)
                           .......+.|...     ......|.+||+.|+..+..++++.+++. +.+.+.+|.+|+||||+|+.+|+.+++
T Consensus       120 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v  193 (228)
T d1k1aa_         120 -----TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLV  193 (228)
T ss_dssp             -----HTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred             -----cccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhh-ccccccccccCcchHHHHHHcCCHHHH
Confidence                 0001123333332     33456799999999999999999999997 899999999999999999999999999


Q ss_pred             HHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          268 KLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       268 ~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      ++|+++|+       ++|.+|.+|+||||+|++.|+.++
T Consensus       194 ~~Ll~~Ga-------d~n~~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         194 RTLVRSGA-------DSSLKNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             HHHHHTTC-------CTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             HHHHHCCC-------CCCCCCCCCCCHHHHHHhCCCccc
Confidence            99999999       999999999999999999887543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.2e-29  Score=243.77  Aligned_cols=239  Identities=17%  Similarity=0.191  Sum_probs=188.5

Q ss_pred             HHcCCHHHHHHHHHcCCCcccc-------ccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922           10 AMRGQWDNFVQAYENNPMSREA-------KLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus        10 a~~g~~~~v~~ll~~~~~~~~~-------~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      ++....+.++.+..........       ..+.+|.||||.||..|+.++|++|++.|.     ++|.+|.+|.||||+|
T Consensus         6 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Ga-----dvn~~d~~G~T~L~~A   80 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA-----DINYANVDGLTALHQA   80 (291)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC-----CTTCBCTTCCBHHHHH
T ss_pred             HhHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCC-----CCCccCCCCCcHHHHH
Confidence            4444567788877764332211       122345699999999999999999999874     5999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..|+.+++++|+++|.+.                                  +..+..+.||||.++.           
T Consensus        81 ~~~g~~eiv~~Ll~~~~~~----------------------------------~~~~~~~~~~L~~a~~-----------  115 (291)
T d1s70b_          81 CIDDNVDMVKFLVENGANI----------------------------------NQPDNEGWIPLHAAAS-----------  115 (291)
T ss_dssp             HHTTCHHHHHHHHHTTCCT----------------------------------TCCCTTSCCHHHHHHH-----------
T ss_pred             HhcCCceeeeeeccccccc----------------------------------cccccccccccccccc-----------
Confidence            9999999999999988654                                  4556778899996651           


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHh
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILD  238 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~  238 (523)
                                                         ....++++.|+++    +..+.+|.+|+++|+..++.+.++.++.
T Consensus       116 -----------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~  160 (291)
T d1s70b_         116 -----------------------------------CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (291)
T ss_dssp             -----------------------------------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             -----------------------------------ccccchhhcccccCcccccccccCccccccccccccchhcccccc
Confidence                                               1224577778776    5677889999999999999999998886


Q ss_pred             hCCC--------------------------cccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCC
Q 041922          239 TIPV--------------------------AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       239 ~~~~--------------------------~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                      ..+.                          +....+..|.||||.|+..|+.+++++|+++|+       ++|.+|.+|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~-------din~~~~~g~  233 (291)
T d1s70b_         161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-------DVNIKDYDGW  233 (291)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-------CTTCCCTTCC
T ss_pred             ccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccccee-------cccccccCCC
Confidence            5332                          234567899999999999999999999999999       9999999999


Q ss_pred             cHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhhhHHhh
Q 041922          293 SALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHKELVKD  359 (523)
Q Consensus       293 TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~~l~~~  359 (523)
                      ||||+|+..|+.+++                   +.++..++ ++.+|++|+||+|+|.+....++.+
T Consensus       234 TpL~~A~~~g~~~iv-------------------~lLl~~Gadv~~~d~~G~TaL~~A~e~~~~~L~~  282 (291)
T d1s70b_         234 TPLHAAAHWGKEEAC-------------------RILVENLCDMEAVNKVGQTAFDVADEDILGYLEE  282 (291)
T ss_dssp             CHHHHHHHTTCHHHH-------------------HHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHH
T ss_pred             CHHHHHHHcCCHHHH-------------------HHHHHCCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999996543                   33333343 6899999999999998754444433

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.3e-31  Score=242.02  Aligned_cols=182  Identities=17%  Similarity=0.216  Sum_probs=132.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEec
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWS  115 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~  115 (523)
                      +|+||||+|+..|+.++++.|++.... ...++|.+|.+|+||||+|++.|+.+++++|+++|+++              
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~-~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~--------------   65 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP--------------   65 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS--------------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHh-CCCCcccCCCCCCccccccccccccccccccccccccc--------------
Confidence            477777777777776555544433221 12356777777777777777777777777776665433              


Q ss_pred             cCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchh
Q 041922          116 SGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDE  195 (523)
Q Consensus       116 ~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (523)
                                          +.+|..|.||||.++.                                            
T Consensus        66 --------------------~~~d~~g~t~l~~~~~--------------------------------------------   81 (221)
T d1iknd_          66 --------------------ELRDFRGNTPLHLACE--------------------------------------------   81 (221)
T ss_dssp             --------------------CCCCTTCCCHHHHHHH--------------------------------------------
T ss_pred             --------------------cccccccccccccccc--------------------------------------------
Confidence                                5566677777775541                                            


Q ss_pred             hhhHHHHHHHHHHhc----------ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccc-cCCCcHHHHHHHcCch
Q 041922          196 TATAAVQELKFMKKK----------DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLD-SEKKNLVLLAVENRQT  264 (523)
Q Consensus       196 ~~~~~~~~v~~Ll~~----------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~~~~  264 (523)
                        ....++++.|++.          ......|.||||.|+..|+.+++++|++. +..++..+ .+|+||||+|++.|+.
T Consensus        82 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          82 --QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             --HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             --cccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc-CcccccccccCCCCccccccccccH
Confidence              1112244444433          23345689999999999999999999998 66666654 6899999999999999


Q ss_pred             hHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          265 GIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       265 ~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                      +++++|+++|+       ++|.+|.+|+||||+|+..++.++
T Consensus       159 ~~v~~Ll~~ga-------d~~~~~~~G~tpl~~A~~~~~~~~  193 (221)
T d1iknd_         159 DLVSLLLKCGA-------DVNRVTYQGYSPYQLTWGRPSTRI  193 (221)
T ss_dssp             HHHHHHHTTTC-------CSCCCCTTCCCGGGGCTTSSCHHH
T ss_pred             HHHHHHHhcCC-------cccccCCCCCCHHHHHHHCCCHHH
Confidence            99999999999       999999999999999999988554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-28  Score=225.39  Aligned_cols=175  Identities=21%  Similarity=0.186  Sum_probs=157.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA   83 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~   83 (523)
                      .+||.||..|+.+.++.++...  ......+..+.++++.|+..|+.+++++|++.+.     +++.+|.+|.||||+|+
T Consensus        39 TpLh~Aa~~g~~e~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~-----d~~~~d~~g~tpL~~A~  111 (223)
T d1uoha_          39 TALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA-----QVNAVNQNGCTPLHYAA  111 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHT--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHhhhhcccccccccc--cccccccccccccccccccccccchhHHHhccCc-----eeEeeCCCCCchhhHHH
Confidence            5799999999999999999884  4455667889999999999999999999999763     58999999999999999


Q ss_pred             HcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCC
Q 041922           84 ALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETP  163 (523)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~  163 (523)
                      ..|+.+++++|+++|.+++                                                             
T Consensus       112 ~~~~~e~~~~Ll~~g~d~~-------------------------------------------------------------  130 (223)
T d1uoha_         112 SKNRHEIAVMLLEGGANPD-------------------------------------------------------------  130 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-------------------------------------------------------------
T ss_pred             HcCCHHHHHHHHHCCCCCC-------------------------------------------------------------
Confidence            9999999999999987652                                                             


Q ss_pred             CCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCc
Q 041922          164 PVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVA  243 (523)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  243 (523)
                                                                      ..+..|.||||+|+..|+.+++++|++. +.+
T Consensus       131 ------------------------------------------------~~~~~~~t~L~~a~~~~~~~~~~~L~~~-~~~  161 (223)
T d1uoha_         131 ------------------------------------------------AKDHYEATAMHRAAAKGNLKMIHILLYY-KAS  161 (223)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             ------------------------------------------------CcCCCCCccchhhhhcCCcchhhhhccc-cce
Confidence                                                            2344689999999999999999999886 899


Q ss_pred             ccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCC
Q 041922          244 IHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGE  303 (523)
Q Consensus       244 ~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~  303 (523)
                      ++.+|.+|+||||+|+.+|+.+++++|+++|+       +++.+|.+|+||||+|. .|+
T Consensus       162 i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga-------d~~~~d~~g~tpl~~A~-~~~  213 (223)
T d1uoha_         162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-------SIYIENKEEKTPLQVAK-GGL  213 (223)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-------CSCCCCTTSCCHHHHCC-TTH
T ss_pred             eeeccCCCCceeccccccCcHHHHHHHHHCCC-------CCCCCCCCCCCHHHHHH-CCC
Confidence            99999999999999999999999999999999       99999999999999984 455

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-28  Score=233.08  Aligned_cols=248  Identities=20%  Similarity=0.175  Sum_probs=169.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccC-CCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLT-RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL   81 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~   81 (523)
                      ...|+.|++.|+.+.|+.|+++  +.+++.++ ..|+||||+|+..|+.+++++|++.+.     ..+..+..+.+|.+.
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~--G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~-----~~~~~~~~~~~~~~~   78 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-----DPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHC--CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccc-----cccccccccchhhHH
Confidence            3568999999999999999998  56666554 579999999999999999999999764     367778889999999


Q ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCCc-eeEeccCCcccc-hhhhhhc-------CCccCCccCCCCCCCccccCCCC
Q 041922           82 AAALGNEAMCHCMASKDRELISAADEGLA-NCSWSSGNLEDK-EHHREKR-------GTYMGLSSNDDHGKSSRDSRPDK  152 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l~~~~~~~~v-~~l~~~~-------~~~~~l~~~d~~g~tpLh~a~~~  152 (523)
                      |+..+..+.....++...+....+..+.+ ++.+...+.... ..++...       .........+..|.||||.|+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T d1wdya_          79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHc
Confidence            99999999999999987766555444444 444444444432 3333220       01111245667899999988731


Q ss_pred             CCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCC--------cc--------hhhhhHHHHHHHHHHhc----cc
Q 041922          153 DGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGN--------AR--------DETATAAVQELKFMKKK----DQ  212 (523)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~--------~~~~~~~~~~v~~Ll~~----~~  212 (523)
                                              +..+.++.+++..+.        +.        ........++++.|+++    +.
T Consensus       159 ------------------------~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~  214 (285)
T d1wdya_         159 ------------------------GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV  214 (285)
T ss_dssp             ------------------------TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred             ------------------------CCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCc
Confidence                                    112222222211110        00        01111223466777765    45


Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCcccccccccc
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVD  288 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d  288 (523)
                      ++..|.||||.|++.|+.+++++||+.+|.+++.+|.+|+||||+|+++|+.+++++|+++|+       ++|.+|
T Consensus       215 ~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GA-------d~n~~d  283 (285)
T d1wdya_         215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA-------STDCGD  283 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS-------CSCCSS
T ss_pred             cCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-------CCCccc
Confidence            566777777777777777777777776677777777777777777777777777777777777       777766

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-27  Score=227.66  Aligned_cols=238  Identities=19%  Similarity=0.191  Sum_probs=178.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccc-cCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCc-eeE
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN-DRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLA-NCS  113 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-l~l  113 (523)
                      +++|+||.|+++|+.++|++|++.|.     ++|.++ ..|.||||+|+..|+.+++++|++.+............ ...
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~-----din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~   78 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGA-----NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCC-----CcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHH
Confidence            46899999999999999999999874     477665 57999999999999999999999999877666555444 222


Q ss_pred             eccCCccc-chhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCc
Q 041922          114 WSSGNLED-KEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNA  192 (523)
Q Consensus       114 ~~~~~~~~-v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (523)
                      +...+... ....+..   ..+....+..|.|+++.++...                        .              
T Consensus        79 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~a~~~~------------------------~--------------  117 (285)
T d1wdya_          79 AAIAGSVKLLKLFLSK---GADVNECDFYGFTAFMEAAVYG------------------------K--------------  117 (285)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCTTCBCTTCCBHHHHHHHTT------------------------C--------------
T ss_pred             HhhcCCccccchhhhh---cccccccccCCCchhHHHHHhc------------------------c--------------
Confidence            22222222 2333333   3444566778888888664210                        0              


Q ss_pred             chhhhhHHHHHHHHHHhc--------------ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHH
Q 041922          193 RDETATAAVQELKFMKKK--------------DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLA  258 (523)
Q Consensus       193 ~~~~~~~~~~~v~~Ll~~--------------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A  258 (523)
                              ...++.+++.              ...+..|.||||+|+++|+.+++++|+++.+++++..|..|+++++.+
T Consensus       118 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~  189 (285)
T d1wdya_         118 --------VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA  189 (285)
T ss_dssp             --------HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred             --------hhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccc
Confidence                    1122222211              234567999999999999999999999988999999999999999887


Q ss_pred             HHcC----chhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCC-cc
Q 041922          259 VENR----QTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMP-RY  333 (523)
Q Consensus       259 ~~~~----~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~-~~  333 (523)
                      ...+    ..+++++|+++|+       ++|.+|.+|+||||.|++.++.+++                   +.++. .+
T Consensus       190 ~~~~~~~~~~~i~~~Li~~ga-------~~n~~~~~g~t~L~~a~~~~~~~~v-------------------~~lL~~~g  243 (285)
T d1wdya_         190 LLSSDDSDVEAITHLLLDHGA-------DVNVRGERGKTPLILAVEKKHLGLV-------------------QRLLEQEH  243 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTC-------CSSCCCTTSCCHHHHHHHTTCHHHH-------------------HHHHHSSS
T ss_pred             cccccchHHHHHHHHHHHCCC-------CCCccCCCCCCccchhhhcCcHHHH-------------------HHHHHcCC
Confidence            6643    4579999999999       9999999999999999999985432                   22221 12


Q ss_pred             c-ccccCCCCCChhHHhhhhh
Q 041922          334 F-FLGYNNKGKTPKEIFTKTH  353 (523)
Q Consensus       334 ~-~~~~n~~G~Tpl~la~~~~  353 (523)
                      . ++.+|.+|+|||++|.+..
T Consensus       244 ~din~~d~~G~TpL~~A~~~~  264 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcCCCCCCCCHHHHHHHcC
Confidence            2 6889999999999999764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=8.6e-28  Score=228.71  Aligned_cols=218  Identities=18%  Similarity=0.170  Sum_probs=165.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcC------CCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCCh
Q 041922            4 NCLSKFAMRGQWDNFVQAYENN------PMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDT   77 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~------~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~T   77 (523)
                      .+||.||..|+.+.++.|+...      .|+++|.+|.+|+||||+|+..|+.++|++|++.|+     +++.+|.+|+|
T Consensus        35 T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga-----d~n~~~~~g~t  109 (277)
T d2fo1e1          35 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA-----DPTIYNKSERS  109 (277)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CSCCCCTTCCC
T ss_pred             cHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccc-----ccccccccccc
Confidence            6899999999999887775431      267889999999999999999999999999999864     58999999999


Q ss_pred             HHhHHHHcCCHHHHHHHHhcCccccc---ccCCCCc-eeEeccCCccc-c---hhhhhhc-----CCccCCccCCCCCCC
Q 041922           78 ALHLAAALGNEAMCHCMASKDRELIS---AADEGLA-NCSWSSGNLED-K---EHHREKR-----GTYMGLSSNDDHGKS  144 (523)
Q Consensus        78 pLh~A~~~g~~~iv~~Ll~~~~~~~~---~~~~~~~-l~l~~~~~~~~-v---~~l~~~~-----~~~~~l~~~d~~g~t  144 (523)
                      |||+|+..++.++++.+...+.....   .+....+ ...+....... .   ..+.++.     ......+..+..|+|
T Consensus       110 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  189 (277)
T d2fo1e1         110 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  189 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             cccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCC
Confidence            99999999999999999887543222   2222222 11112222111 1   2222221     112233677889999


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc-----ccccCCCCh
Q 041922          145 SRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK-----DQQSGRKAT  219 (523)
Q Consensus       145 pLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~t  219 (523)
                      |||.++..                                              ...++++.++..     +.+|..|.|
T Consensus       190 ~L~~~~~~----------------------------------------------~~~~~~~~~l~~~~~~~~~~d~~g~t  223 (277)
T d2fo1e1         190 ALHYAAQV----------------------------------------------SNMPIVKYLVGEKGSNKDKQDEDGKT  223 (277)
T ss_dssp             THHHHHSS----------------------------------------------CCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             cccccccc----------------------------------------------ccccccccccccccccccccCCCCCC
Confidence            99966521                                              113355544433     567889999


Q ss_pred             HHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhc
Q 041922          220 PILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDR  273 (523)
Q Consensus       220 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  273 (523)
                      |||+|++.|+.+++++|+++ |++++.+|.+|+||||+|+++|+.++|++|++.
T Consensus       224 pL~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         224 PIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999997 899999999999999999999999999999864

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=3.6e-27  Score=214.77  Aligned_cols=198  Identities=17%  Similarity=0.133  Sum_probs=152.4

Q ss_pred             HHHHHHHHcCCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHH
Q 041922           16 DNFVQAYENNPMSREAK-LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCM   94 (523)
Q Consensus        16 ~~v~~ll~~~~~~~~~~-~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L   94 (523)
                      |.|+.|++.  +.+++. .|.+|+||||+||..|+.+++++|++.+.     .++.+|..+.|+++.++..++.......
T Consensus         3 ~~v~~Ll~~--g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~-----~~n~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           3 QVISDLLAQ--GAELNATMDKTGETSLHLAARFARADAAKRLLDAGA-----DANSQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHC--CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcc-----cccccccccccccccccccccccccccc
Confidence            567777777  666765 47888888888888888888888888754     3788888888888888888887776666


Q ss_pred             HhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchh
Q 041922           95 ASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQS  174 (523)
Q Consensus        95 l~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~  174 (523)
                      .......                                 ....+..|.++.+.+..                       
T Consensus        76 ~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~-----------------------   99 (209)
T d1ot8a_          76 LRNRATN---------------------------------LNARMHDGTTPLILAAR-----------------------   99 (209)
T ss_dssp             HTCTTCC---------------------------------TTCCCTTCCCHHHHHHH-----------------------
T ss_pred             ccccccc---------------------------------ccccccccccccccccc-----------------------
Confidence            5543221                                 11222333443332110                       


Q ss_pred             hhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccC
Q 041922          175 RNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSE  250 (523)
Q Consensus       175 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~  250 (523)
                                             .......+.|.+.    +.++..|.|||+.|+.+|..++++.+++. +.+++..|.+
T Consensus       100 -----------------------~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~  155 (209)
T d1ot8a_         100 -----------------------LAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDK  155 (209)
T ss_dssp             -----------------------TTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             -----------------------ccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc-cccccccccc
Confidence                                   0001134444444    56778899999999999999999999997 7899999999


Q ss_pred             CCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          251 KKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       251 G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      |.||||+|+.+|+.+++++|+++|+       ++|.+|.+|+||||+|++.|+.+++
T Consensus       156 g~TpL~~A~~~g~~~~v~~Ll~~ga-------d~n~~d~~g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKALLDNFA-------NREITDHMDRLPRDVASERLHHDIV  205 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccchhccccHHHHHHHHHHCCC-------CCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999999999999999       9999999999999999999996654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-26  Score=200.35  Aligned_cols=154  Identities=23%  Similarity=0.293  Sum_probs=137.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH
Q 041922            2 EVNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL   81 (523)
Q Consensus         2 ~~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~   81 (523)
                      .|.+|+.||..|+.+.|+.+++++ +.+++..|..|+||||+|+ .|+.+++++|++.+.     +++.++..|.+|++.
T Consensus         2 ~g~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~-----~~~~~~~~~~~~l~~   74 (156)
T d1bd8a_           2 AGDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA-----SPNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCccccccc-ccccccccccccccc-----ccccccccccccccc
Confidence            378999999999999999999876 4678899999999999987 489999999998753     488899999999999


Q ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCC
Q 041922           82 AAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPE  161 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~  161 (523)
                      |+..++.++++.++++|+++                                                            
T Consensus        75 ~~~~~~~~~~~~~l~~~~~~------------------------------------------------------------   94 (156)
T d1bd8a_          75 AARTGFLDTLKVLVEHGADV------------------------------------------------------------   94 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCS------------------------------------------------------------
T ss_pred             cccccccccccccccccccc------------------------------------------------------------
Confidence            99999999999999998765                                                            


Q ss_pred             CCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCC
Q 041922          162 TPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIP  241 (523)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~  241 (523)
                                                                       +.+|.+|.||||+|++.|+.+++++|++  +
T Consensus        95 -------------------------------------------------n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~  123 (156)
T d1bd8a_          95 -------------------------------------------------NVPDGTGALPIHLAVQEGHTAVVSFLAA--E  123 (156)
T ss_dssp             -------------------------------------------------CCCCTTSCCHHHHHHHHTCHHHHHHHHT--T
T ss_pred             -------------------------------------------------ccccCCCCeeeccccccccccccccccc--c
Confidence                                                             2234568999999999999999998874  6


Q ss_pred             CcccccccCCCcHHHHHHHcCchhHHHHHHhc
Q 041922          242 VAIHDLDSEKKNLVLLAVENRQTGIYKLLLDR  273 (523)
Q Consensus       242 ~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  273 (523)
                      ++++.+|.+|+||||+|+++|+.+++++|+++
T Consensus       124 ~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         124 SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            89999999999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=199.07  Aligned_cols=155  Identities=18%  Similarity=0.195  Sum_probs=136.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      |++||.||..|+.+.|+.|+++  +.+++.+|.+|.||||+|+ .|+.+++++|++.+.     +++.++..|.|||+.+
T Consensus         2 ~~~Lh~Aa~~g~~~~v~~Ll~~--g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a-----~~~~~~~~~~~~l~~~   73 (156)
T d1ihba_           2 GNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGA-----NPDLKDRTGFAVIHDA   73 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHC--CCCcCccCCcccccccccc-ccccccccccccccc-----ccccccccCccccccc
Confidence            6789999999999999999988  6777888999999999875 789999999998763     4888899999999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +..++.+.++.|++.+.++                                                             
T Consensus        74 ~~~~~~~~~~~l~~~~~~~-------------------------------------------------------------   92 (156)
T d1ihba_          74 ARAGFLDTLQTLLEFQADV-------------------------------------------------------------   92 (156)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-------------------------------------------------------------
T ss_pred             ccccccccccccccccccc-------------------------------------------------------------
Confidence            9999999999998887544                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +..+..|.+|||+|+..|+.+++++|+++++.
T Consensus        93 ------------------------------------------------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  124 (156)
T d1ihba_          93 ------------------------------------------------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  124 (156)
T ss_dssp             ------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             ------------------------------------------------cccccccccccccccccccccccccccccccc
Confidence                                                            22344689999999999999999999999777


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHHHhcc
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLLLDRK  274 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  274 (523)
                      +.+.+|.+|+||||+|+++++.+++++|+++|
T Consensus       125 ~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-27  Score=216.23  Aligned_cols=192  Identities=15%  Similarity=0.109  Sum_probs=157.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcC--CCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH
Q 041922            4 NCLSKFAMRGQWDNFVQAYENN--PMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL   81 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~~--~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~   81 (523)
                      ++||.|+..|+.+.+.++++..  .+.++|.+|.+|+||||+|+..|+.+++++|++.|.     +++.+|.+|.||||.
T Consensus         4 t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~-----d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           4 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-----DPELRDFRGNTPLHL   78 (221)
T ss_dssp             CTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-----CSCCCCTTCCCHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccc-----ccccccccccccccc
Confidence            4689999999976666554321  146688899999999999999999999999998763     589999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCC
Q 041922           82 AAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPE  161 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~  161 (523)
                      |+..|+.++++.|++.+.....                            ....+.....|.||||.|+.          
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~----------------------------~~~~~~~~~~~~t~l~~a~~----------  120 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHL----------------------------HSILKATNYNGHTCLHLASI----------  120 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSS----------------------------SCGGGCCCTTCCCHHHHHHH----------
T ss_pred             ccccccccccchhhhhcccccc----------------------------cccccccccccchhhhHHhh----------
Confidence            9999999999999998765421                            22335566778999997652          


Q ss_pred             CCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc-----ccccCCCChHHHHHHHcChHHHHHHH
Q 041922          162 TPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK-----DQQSGRKATPILIAAKMGVTEMVEKI  236 (523)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g~~~~v~~L  236 (523)
                                                          ....+.++.+++.     ...+.+|.||||+|++.|+.+++++|
T Consensus       121 ------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~L  164 (221)
T d1iknd_         121 ------------------------------------HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL  164 (221)
T ss_dssp             ------------------------------------TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ------------------------------------cCChhheeeecccCcccccccccCCCCccccccccccHHHHHHH
Confidence                                                1124466666655     23446799999999999999999999


Q ss_pred             HhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          237 LDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       237 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      ++. |++++.+|.+|+||||+|+++++.+++++|++...
T Consensus       165 l~~-gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         165 LKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             HTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             Hhc-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            996 89999999999999999999999999999999865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.7e-25  Score=191.75  Aligned_cols=146  Identities=21%  Similarity=0.209  Sum_probs=118.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccC
Q 041922           38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSG  117 (523)
Q Consensus        38 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~  117 (523)
                      .||||.||+.|+.++|+.|++.|++     ++ .|..|+||||+|+..++.++++.++.......               
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~-----~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~---------------   61 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP-----FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD---------------   61 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-----CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---------------
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC-----cc-cccCCCcccccccccccccccccccccccccc---------------
Confidence            4899999999999999999988642     44 58889999999999999998888877654321               


Q ss_pred             CcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhh
Q 041922          118 NLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETA  197 (523)
Q Consensus       118 ~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (523)
                                                                                                      
T Consensus        62 --------------------------------------------------------------------------------   61 (153)
T d1awcb_          62 --------------------------------------------------------------------------------   61 (153)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccC
Q 041922          198 TAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLG  277 (523)
Q Consensus       198 ~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~  277 (523)
                                    ..+..+.++++.++...+.+.++.+++. +.+.+.+|.+|+||||+|+..|+.+++++|+++|+  
T Consensus        62 --------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga--  124 (153)
T d1awcb_          62 --------------ARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA--  124 (153)
T ss_dssp             --------------CCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred             --------------ccccccccccccccccccceeeeccccc-CCccccccccCchHHHhhhhcchhheeeecccccc--
Confidence                          1122467788888888888888888876 77888888888889999888888888888888888  


Q ss_pred             CccccccccccCCCCcHhHHHHHhCCCCC
Q 041922          278 ESDLNIFEHVDIKGNSALHLAAKFGEYGP  306 (523)
Q Consensus       278 ~~~~~~in~~d~~G~TpLH~Aa~~~~~~~  306 (523)
                           ++|.+|++|+||||+|+.+|+.++
T Consensus       125 -----d~~~~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_         125 -----DVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             -----CTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             -----CCcccCCCCCCHHHHHHHcCCHHH
Confidence                 888888888999999888888554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=194.00  Aligned_cols=147  Identities=22%  Similarity=0.246  Sum_probs=132.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCC
Q 041922           39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGN  118 (523)
Q Consensus        39 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~  118 (523)
                      +|||+||..|+.++|+.|++.|.     +++.+|.+|.||||+|+ .|+.+++++|+++|+++.                
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~-----d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~----------------   60 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV-----NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD----------------   60 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC-----CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-----CcCccCCcccccccccc-cccccccccccccccccc----------------
Confidence            79999999999999999999763     58999999999999886 799999999999987652                


Q ss_pred             cccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhh
Q 041922          119 LEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT  198 (523)
Q Consensus       119 ~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (523)
                                                                                                      
T Consensus        61 --------------------------------------------------------------------------------   60 (156)
T d1ihba_          61 --------------------------------------------------------------------------------   60 (156)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCC
Q 041922          199 AAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE  278 (523)
Q Consensus       199 ~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  278 (523)
                                   ..+..|.+|++.++..|+.+.++.|++. +.+++..|..|.+|||+|+..++.+++++|+++++.  
T Consensus        61 -------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~--  124 (156)
T d1ihba_          61 -------------LKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--  124 (156)
T ss_dssp             -------------CCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--
T ss_pred             -------------cccccCcccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc--
Confidence                         2344688999999999999999999986 789999999999999999999999999999999874  


Q ss_pred             ccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          279 SDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       279 ~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                          +.+.+|++|+||||+|++.++.+++
T Consensus       125 ----~~~~~d~~g~TpL~~A~~~~~~~iv  149 (156)
T d1ihba_         125 ----NVGHRNHKGDTACDLARLYGRNEVV  149 (156)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ----cccccCCCCCCHHHHHHHcCCHHHH
Confidence                7899999999999999999996643

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-25  Score=192.47  Aligned_cols=146  Identities=21%  Similarity=0.221  Sum_probs=129.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCC
Q 041922           39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGN  118 (523)
Q Consensus        39 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~  118 (523)
                      +.||.||..|+.++|+.|++.+    ..+++.+|..|+||||+|+ .|+.+++++|++++.+++                
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~----~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~----------------   62 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE----LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN----------------   62 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT----CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC----CCCCCccCCCCCccccccc-cccccccccccccccccc----------------
Confidence            4599999999999999999863    2468999999999999987 588999999999887652                


Q ss_pred             cccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhh
Q 041922          119 LEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT  198 (523)
Q Consensus       119 ~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (523)
                                                                                                      
T Consensus        63 --------------------------------------------------------------------------------   62 (156)
T d1bd8a_          63 --------------------------------------------------------------------------------   62 (156)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCC
Q 041922          199 AAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE  278 (523)
Q Consensus       199 ~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  278 (523)
                                   ..+..|.+|++.++..++.++++.+++. +.+++.+|.+|+||||+|++.|+.+++++|+ .|+   
T Consensus        63 -------------~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~---  124 (156)
T d1bd8a_          63 -------------VQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AES---  124 (156)
T ss_dssp             -------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTS---
T ss_pred             -------------cccccccccccccccccccccccccccc-ccccccccCCCCeeecccccccccccccccc-ccc---
Confidence                         2234588999999999999999999997 7899999999999999999999999999887 567   


Q ss_pred             ccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          279 SDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       279 ~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                          +++.+|.+|+||||+|++.|+.+++
T Consensus       125 ----~~~~~d~~G~TpL~~A~~~g~~~iv  149 (156)
T d1bd8a_         125 ----DLHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             ----cccccCCCCCCHHHHHHHcCCHHHH
Confidence                8999999999999999999996543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.7e-24  Score=184.52  Aligned_cols=150  Identities=19%  Similarity=0.209  Sum_probs=133.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHH
Q 041922            3 VNCLSKFAMRGQWDNFVQAYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA   82 (523)
Q Consensus         3 ~~~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A   82 (523)
                      |+||+.||+.|+.+.|+.||++.  .+.+ .|..|+||||+|+..++.++++.++....     .....+..+.++++.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~g--a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   74 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-----SRDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-----CTTCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcC--CCcc-cccCCCccccccccccccccccccccccc-----cccccccccccccccc
Confidence            68999999999999999999984  4544 58999999999999999999999987643     3566778889999999


Q ss_pred             HHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCC
Q 041922           83 AALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPET  162 (523)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~  162 (523)
                      +...+.++++++++.+.+.                                                             
T Consensus        75 ~~~~~~~~~~~l~~~~~~~-------------------------------------------------------------   93 (153)
T d1awcb_          75 ASEGHANIVEVLLKHGADV-------------------------------------------------------------   93 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCT-------------------------------------------------------------
T ss_pred             cccccceeeecccccCCcc-------------------------------------------------------------
Confidence            9999999999999988654                                                             


Q ss_pred             CCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCC
Q 041922          163 PPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPV  242 (523)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  242 (523)
                                                                      +.++.+|.||||+|+..|+.+++++|++. |+
T Consensus        94 ------------------------------------------------~~~~~~g~T~L~~A~~~g~~~iv~~ll~~-ga  124 (153)
T d1awcb_          94 ------------------------------------------------NAKDMLKMTALHWATEHNHQEVVELLIKY-GA  124 (153)
T ss_dssp             ------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ------------------------------------------------ccccccCchHHHhhhhcchhheeeecccc-cc
Confidence                                                            22445799999999999999999999997 89


Q ss_pred             cccccccCCCcHHHHHHHcCchhHHHHH
Q 041922          243 AIHDLDSEKKNLVLLAVENRQTGIYKLL  270 (523)
Q Consensus       243 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~L  270 (523)
                      +++.+|.+|+||||+|+.+|+.+++++|
T Consensus       125 d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         125 DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999999976

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=2.5e-24  Score=195.64  Aligned_cols=193  Identities=20%  Similarity=0.319  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHhcccccccccc-cccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhh
Q 041922           50 TNIVSELVEIMGENASNVLKI-QNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREK  128 (523)
Q Consensus        50 ~~~v~~Ll~~~~~~~~~~~~~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~  128 (523)
                      .|+|+.|++.|+     ++|. .|.+|+||||+||+.|+.+++++|++.|+++                           
T Consensus         2 ~~~v~~Ll~~g~-----din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~---------------------------   49 (209)
T d1ot8a_           2 AQVISDLLAQGA-----ELNATMDKTGETSLHLAARFARADAAKRLLDAGADA---------------------------   49 (209)
T ss_dssp             HHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT---------------------------
T ss_pred             HHHHHHHHHCCC-----CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc---------------------------
Confidence            589999999985     4887 5999999999999999999999999987755                           


Q ss_pred             cCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHH
Q 041922          129 RGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMK  208 (523)
Q Consensus       129 ~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll  208 (523)
                             +.++..+.++++.+...                                           .+   ........
T Consensus        50 -------n~~~~~~~~~~~~~~~~-------------------------------------------~~---~~~~~~~~   76 (209)
T d1ot8a_          50 -------NSQDNTGRTPLHAAVAA-------------------------------------------DA---MGVFQILL   76 (209)
T ss_dssp             -------TCCCTTSCCHHHHHHHT-------------------------------------------TC---HHHHHHHH
T ss_pred             -------ccccccccccccccccc-------------------------------------------cc---cccccccc
Confidence                   56677778877744310                                           00   00111111


Q ss_pred             hc-----ccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccc
Q 041922          209 KK-----DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNI  283 (523)
Q Consensus       209 ~~-----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~  283 (523)
                      ..     ......|.++.+.+.........+.|.+. +.+++.+|..|+||||.|+.+++.++++.+++.+.       +
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~-------~  148 (209)
T d1ot8a_          77 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHA-------N  148 (209)
T ss_dssp             TCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-------C
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeeccccc-------c
Confidence            11     33445688999999999999999999886 89999999999999999999999999999999998       9


Q ss_pred             cccccCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhhhhhh
Q 041922          284 FEHVDIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFTKTHK  354 (523)
Q Consensus       284 in~~d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~~~~~  354 (523)
                      +|.+|.+|+||||+|+..|+.+++                   +.++..++ ++.+|++|+||+++|.++..
T Consensus       149 ~~~~d~~g~TpL~~A~~~g~~~~v-------------------~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         149 RDAQDDKDETPLFLAAREGSYEAS-------------------KALLDNFANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHH-------------------HHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccchhccccHHHHH-------------------HHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            999999999999999999996543                   22233333 58999999999999998643

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.5e-25  Score=200.26  Aligned_cols=211  Identities=12%  Similarity=0.079  Sum_probs=159.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhH
Q 041922            4 NCLSKFAMRGQWDNFVQAYEN--NPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHL   81 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~ll~~--~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~   81 (523)
                      .|||.||..|+.+.++.+++.  ..+.+++.+|..|+||||+|+..|+.++++.|++.+.     ..+..+.+|.++++.
T Consensus         5 TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga-----~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           5 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-----SPMALDRHGQTAAHL   79 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccc-----ccccccccccccccc
Confidence            479999999999999998862  1267788999999999999999999999999999864     478889999999999


Q ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCC---ceeEeccC--Ccccc-hhhhhhcCCccCCccCCCCCCCccccCCCCCCC
Q 041922           82 AAALGNEAMCHCMASKDRELISAADEGL---ANCSWSSG--NLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGD  155 (523)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~---~l~l~~~~--~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~  155 (523)
                      |...++.++++.+...........+...   ...++...  ..... ..+...  ........+..|.+|||.|+..   
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~a~~~---  154 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER--GADIDAVDIKSGRSPLIHAVEN---  154 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHT---
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcc--ccccccccccchhhHHHHHHHh---
Confidence            9999999999988776543322222111   11111111  11111 333332  1222345667888999976521   


Q ss_pred             CccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhhHHHHHHHHHHhc----ccccCCCChHHHHHHHcChHH
Q 041922          156 TFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETATAAVQELKFMKKK----DQQSGRKATPILIAAKMGVTE  231 (523)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~Ll~~----~~~~~~g~tpLh~Aa~~g~~~  231 (523)
                                                                 ...++++.+++.    +.+|..|.||||+|+..|+.+
T Consensus       155 -------------------------------------------~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~  191 (228)
T d1k1aa_         155 -------------------------------------------NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP  191 (228)
T ss_dssp             -------------------------------------------TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred             -------------------------------------------hhhhhhhhhhhhccccccccccCcchHHHHHHcCCHH
Confidence                                                       112355666655    667889999999999999999


Q ss_pred             HHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHH
Q 041922          232 MVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYK  268 (523)
Q Consensus       232 ~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~  268 (523)
                      ++++|+++ |++++.+|.+|+||||+|+++|+.++||
T Consensus       192 ~v~~Ll~~-Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         192 LVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHT-TCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHHHC-CCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999997 8999999999999999999999998875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.9e-25  Score=215.41  Aligned_cols=194  Identities=16%  Similarity=0.091  Sum_probs=121.1

Q ss_pred             Cccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCH---HHHHHHHhcCcccc
Q 041922           27 MSREAK-LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNE---AMCHCMASKDRELI  102 (523)
Q Consensus        27 ~~~~~~-~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~---~iv~~Ll~~~~~~~  102 (523)
                      +.++|. .|.+|+||||+||..|+.++|+.|++.|+     +++.+|..|+||||.||..++.   +.++.|++..    
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga-----d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l----  166 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-----NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL----  166 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH----
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH----
Confidence            345554 38999999999999999999999999864     5899999999999999987752   1122222211    


Q ss_pred             cccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHH
Q 041922          103 SAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESA  182 (523)
Q Consensus       103 ~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  182 (523)
                                                   ...++.+|..|+||||.++....                    ...+....
T Consensus       167 -----------------------------~~~~~~~d~~g~t~lh~~~~~~~--------------------~~~~~~~~  197 (301)
T d1sw6a_         167 -----------------------------YPCLILEDSMNRTILHHIIITSG--------------------MTGCSAAA  197 (301)
T ss_dssp             -----------------------------GGGGGEECTTCCCHHHHHHHHHT--------------------STTCHHHH
T ss_pred             -----------------------------hhhhhhcccccCCHHHHHHHHhC--------------------ccccHHHH
Confidence                                         11235668889999996542000                    00000000


Q ss_pred             HHhhccCCCcchhhhhHHHHHHHHHHhc-----ccccCCCChHHHHHHHcChHHHHHHHH--hhCCCcccccccCCCcHH
Q 041922          183 VAVHNKDGNARDETATAAVQELKFMKKK-----DQQSGRKATPILIAAKMGVTEMVEKIL--DTIPVAIHDLDSEKKNLV  255 (523)
Q Consensus       183 ~~l~~~~~~~~~~~~~~~~~~v~~Ll~~-----~~~~~~g~tpLh~Aa~~g~~~~v~~Ll--~~~~~~~~~~d~~G~t~L  255 (523)
                      +              .....++..+++.     ......+.++++.+........++.+.  ......+|.+|.+|+|||
T Consensus       198 ~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpL  263 (301)
T d1sw6a_         198 K--------------YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL  263 (301)
T ss_dssp             H--------------HHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHH
T ss_pred             H--------------HHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHH
Confidence            0              0001133444444     223345666666665554444333211  011234788999999999


Q ss_pred             HHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHH
Q 041922          256 LLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAA  299 (523)
Q Consensus       256 h~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa  299 (523)
                      |+|+++|+.++|++|+++|+       +++.+|++|+||||+|+
T Consensus       264 h~A~~~g~~~iv~~Ll~~GA-------d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         264 NIAARLGNISIVDALLDYGA-------DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHCCHHHHHHHHHTTC-------CTTCCCTTSCCGGGGTC
T ss_pred             HHHHHcCCHHHHHHHHHCCC-------CCCCCCCCCCCHHHHcC
Confidence            99999999999999999999       99999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=8.5e-27  Score=229.18  Aligned_cols=54  Identities=15%  Similarity=0.113  Sum_probs=42.8

Q ss_pred             CcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCCCc
Q 041922          252 KNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYGPW  307 (523)
Q Consensus       252 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~~~  307 (523)
                      .++++.|+..++.+++++|++.+.....  ...+..+.+|+||||+|++.|+.+++
T Consensus       280 ~~~l~~a~~~~~ld~v~~Ll~~~~~~~~--~~~~~~~~~g~T~LhlA~~~Gn~e~v  333 (346)
T d2ajaa1         280 LRNLIRRNDEVLLDDIRFLLSIPGIKAL--APTATIPGDANELLRLALRLGNQGAC  333 (346)
T ss_dssp             HHHHHHHCCGGGHHHHHHHHTSTTTGGG--SSCCSSTTCCCHHHHHHHHHTCTTHH
T ss_pred             hhHHHHHhcCChHHHHHHHHhCcChhhh--cccccCCCCCCcHHHHHHHcCcHHHH
Confidence            4678888888999999999998874211  03445667899999999999998875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.5e-24  Score=175.77  Aligned_cols=121  Identities=18%  Similarity=0.156  Sum_probs=105.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEec
Q 041922           36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWS  115 (523)
Q Consensus        36 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~  115 (523)
                      .+.++||+||..|+.++|++|++.|.     +++.+|.+|.||||+|+ .|+.+++++|+++|++++.            
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~ga-----d~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~------------   63 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGA-----NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC------------   63 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTC-----CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC------------
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCC-----ccccccccccccccccc-ccccccccccccccccccc------------
Confidence            35689999999999999999998764     48899999999999775 7999999999999876632            


Q ss_pred             cCCcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchh
Q 041922          116 SGNLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDE  195 (523)
Q Consensus       116 ~~~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  195 (523)
                                                                                                      
T Consensus        64 --------------------------------------------------------------------------------   63 (125)
T d1bi7b_          64 --------------------------------------------------------------------------------   63 (125)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHHHhcccccCC-CChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHh
Q 041922          196 TATAAVQELKFMKKKDQQSGR-KATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLD  272 (523)
Q Consensus       196 ~~~~~~~~v~~Ll~~~~~~~~-g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  272 (523)
                                       ++.. +.||||+|++.|+.+++++|++. |++++.+|.+|+||||+|+++|+.+++++|++
T Consensus        64 -----------------~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          64 -----------------ADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             -----------------CCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             -----------------cccccccccccccccccccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                             2222 45799999999999999999998 89999999999999999999999999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=3.5e-24  Score=175.84  Aligned_cols=79  Identities=24%  Similarity=0.192  Sum_probs=74.4

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCC
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGN  292 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~  292 (523)
                      ++.+|+||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+.+|+.+++++|+++|+       ++|.+|++|+
T Consensus        31 ~~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Ga-------d~~~~d~~G~  102 (118)
T d1myoa_          31 TLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA-------DKTVKGPDGL  102 (118)
T ss_dssp             CSSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCC-------CSSSSSSSTC
T ss_pred             ccccccccccccccccccccccccccc-cceeeecccccccchhhhhhcCchhhhhhhhcccc-------cceeeCCCCC
Confidence            445688999999999999999999997 89999999999999999999999999999999999       9999999999


Q ss_pred             cHhHHHH
Q 041922          293 SALHLAA  299 (523)
Q Consensus       293 TpLH~Aa  299 (523)
                      ||||+|.
T Consensus       103 t~l~~a~  109 (118)
T d1myoa_         103 TALEATD  109 (118)
T ss_dssp             CCCCTCS
T ss_pred             CHHHHHh
Confidence            9999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=9e-25  Score=214.58  Aligned_cols=230  Identities=14%  Similarity=0.039  Sum_probs=150.7

Q ss_pred             hHHHHHHHcCCHHHHHH---HHHcCCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhcccccccccccc--cCCChH
Q 041922            4 NCLSKFAMRGQWDNFVQ---AYENNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQN--DRGDTA   78 (523)
Q Consensus         4 ~~L~~Aa~~g~~~~v~~---ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d--~~G~Tp   78 (523)
                      .+|+.||..|+.+.++.   ++..  +.+++.+|.+|+||||+||++|+.++|++|++.|+     +++..+  .+|+||
T Consensus        92 t~L~~Aa~~g~~~~~~~~~~L~~~--~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~-----~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          92 VICFVAAITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP-----TEIMAMIQAENYHA  164 (346)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT-----TTHHHHHSHHHHHH
T ss_pred             cHHHHHHHhCCHHHHHHHHHHHhC--CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-----CccccccccCCCCh
Confidence            46889999999887755   3444  67888899999999999999999999999999864     355554  569999


Q ss_pred             HhHHHHcCCHHHHHHHHhcCcccccc--cCCCCc--eeEeccCCcccc-hhhhhhcCCccCCccCCCCCCCccccCCCCC
Q 041922           79 LHLAAALGNEAMCHCMASKDRELISA--ADEGLA--NCSWSSGNLEDK-EHHREKRGTYMGLSSNDDHGKSSRDSRPDKD  153 (523)
Q Consensus        79 Lh~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~~~--l~l~~~~~~~~v-~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~  153 (523)
                      ||+||++||.++|++|++.|++....  ...+++  ++.+...++.++ ++|+++   +++++..+..+.++.+.+..  
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~---ga~~~~~~~~~~~~~~~~~~--  239 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC---PVMLAYAEIHEFEYGEKYVN--  239 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS---HHHHHHHHHCTTTTTTTTHH--
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC---CCCcchHHHHHHHcCcHhhh--
Confidence            99999999999999999999865432  223333  344555666664 888876   66665544444444442220  


Q ss_pred             CCCccCCCCCCCCCccccchhhh---HHHHHHHHhhc--cCCCcchhhhhHHHHHHHHHHhcccccCCCChHHHHHHHcC
Q 041922          154 GDTFSVPETPPVLENDQIFQSRN---ICLESAVAVHN--KDGNARDETATAAVQELKFMKKKDQQSGRKATPILIAAKMG  228 (523)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~--~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g  228 (523)
                                        +....   ........+..  ..+.........           ......+.++++.|+..|
T Consensus       240 ------------------~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-----------~~~~~~~~~~l~~a~~~~  290 (346)
T d2ajaa1         240 ------------------PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSE-----------CLQGFYMLRNLIRRNDEV  290 (346)
T ss_dssp             ------------------HHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHH-----------HHHHHHHHHHHHHHCCGG
T ss_pred             ------------------HHHHHhhccchHHHHHHHHhcccccHhHHhccc-----------ccccchhhhHHHHHhcCC
Confidence                              00000   00000000000  000000000000           000112468999999999


Q ss_pred             hHHHHHHHHhhCCCc-----ccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          229 VTEMVEKILDTIPVA-----IHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       229 ~~~~v~~Ll~~~~~~-----~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      +.+++++|++. +..     .+..+.+|+||||+|+++|+.++|++|++.+.
T Consensus       291 ~ld~v~~Ll~~-~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         291 LLDDIRFLLSI-PGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             GHHHHHHHHTS-TTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             hHHHHHHHHhC-cChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCCC
Confidence            99999999986 432     33445689999999999999999999998753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=6e-24  Score=174.40  Aligned_cols=115  Identities=19%  Similarity=0.188  Sum_probs=101.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccC
Q 041922           38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSG  117 (523)
Q Consensus        38 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~  117 (523)
                      +|||++|++.|+.++|++|++.|.     +++.+|.+|+||||+|+..|+.+++++|+++|+++                
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~-----d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di----------------   61 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGE-----DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI----------------   61 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTC-----CCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT----------------
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhh-----cccccccccccccccccccccccccccccccccee----------------
Confidence            589999999999999999998764     58999999999999999999999999999998766                


Q ss_pred             CcccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhh
Q 041922          118 NLEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETA  197 (523)
Q Consensus       118 ~~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (523)
                                                                                                      
T Consensus        62 --------------------------------------------------------------------------------   61 (118)
T d1myoa_          62 --------------------------------------------------------------------------------   61 (118)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHH
Q 041922          198 TAAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLL  271 (523)
Q Consensus       198 ~~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  271 (523)
                                   +.+|..|+||||+|+.+|+.+++++|+++ |++++.+|.+|+||||+|.    .+.++.||
T Consensus        62 -------------n~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-Gad~~~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          62 -------------NAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             -------------TCCSSSCSCHHHHHHTTTCCHHHHHHHTT-CCCSSSSSSSTCCCCCTCS----STTTGGGG
T ss_pred             -------------eecccccccchhhhhhcCchhhhhhhhcc-cccceeeCCCCCCHHHHHh----HHHHHHhc
Confidence                         23455699999999999999999999997 8999999999999999983    24455554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.8e-23  Score=199.10  Aligned_cols=185  Identities=15%  Similarity=0.138  Sum_probs=118.2

Q ss_pred             cccccc-ccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCCcccchhhhhhcCCccCCccCCCCCCC
Q 041922           66 NVLKIQ-NDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHGKS  144 (523)
Q Consensus        66 ~~~~~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~~~~v~~l~~~~~~~~~l~~~d~~g~t  144 (523)
                      .++|.. |.+|+||||+||..|+.++|++|+++|+++                                  +.+|..|+|
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~----------------------------------~~~d~~G~T  142 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR----------------------------------LYGDNMGES  142 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------------------------------TBCCTTCCC
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC----------------------------------CcCCccccc
Confidence            356755 999999999999999999999999987655                                  678899999


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhh---H-HHHHHHHHHhc-ccccCCCCh
Q 041922          145 SRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT---A-AVQELKFMKKK-DQQSGRKAT  219 (523)
Q Consensus       145 pLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~-~~~~v~~Ll~~-~~~~~~g~t  219 (523)
                      |||.|+.                                           .++.   . -.++++.+... ...|..|+|
T Consensus       143 pL~~A~~-------------------------------------------~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t  179 (301)
T d1sw6a_         143 CLVKAVK-------------------------------------------SVNNYDSGTFEALLDYLYPCLILEDSMNRT  179 (301)
T ss_dssp             HHHHHHH-------------------------------------------SSHHHHTTCHHHHHHHHGGGGGEECTTCCC
T ss_pred             HHHHhhh-------------------------------------------cccchhhhhHHHHHHHHhhhhhhcccccCC
Confidence            9998862                                           1110   0 01244444433 567788999


Q ss_pred             HHHHHHHcCh----H--------HHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccc
Q 041922          220 PILIAAKMGV----T--------EMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHV  287 (523)
Q Consensus       220 pLh~Aa~~g~----~--------~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~  287 (523)
                      |||.++..+.    .        .+++.+++.........+..+.++++.+........+..+...... ..   .+|.+
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~in~~  255 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII-AN---MLNAQ  255 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH-HH---TTTCC
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH-hc---CccCC
Confidence            9998887543    1        2344555654455566667788888887776665555433211100 00   68999


Q ss_pred             cCCCCcHhHHHHHhCCCCCccCCcchhhhHHHhHHHHHHHhhCCccc-ccccCCCCCChhHHhh
Q 041922          288 DIKGNSALHLAAKFGEYGPWRIPGAALQMQWEIKWYKFVKESMPRYF-FLGYNNKGKTPKEIFT  350 (523)
Q Consensus       288 d~~G~TpLH~Aa~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~~~~~~-~~~~n~~G~Tpl~la~  350 (523)
                      |.+|+||||+|++.|+.+++                   +.++..++ ++++|++|+||+|+|.
T Consensus       256 D~~G~TpLh~A~~~g~~~iv-------------------~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         256 DSNGDTCLNIAARLGNISIV-------------------DALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCHHHHHHHHCCHHHH-------------------HHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCHHHHHHHcCCHHHH-------------------HHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999996543                   33334444 6999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.6e-22  Score=168.77  Aligned_cols=122  Identities=16%  Similarity=0.213  Sum_probs=100.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhcccccccccccccCCChHHhHHHHcCCHHHHHHHHhcCcccccccCCCCceeEeccCC
Q 041922           39 TALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSGN  118 (523)
Q Consensus        39 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~l~l~~~~~  118 (523)
                      ++||.||..|+.++|+.|++.|.     ++|.+|.+|+||||+|+..|+.+++++|++.|+++                 
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~-----d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-----------------   60 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVD-----DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-----------------   60 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTS-----SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCC-----Ccccccccccccccccccccccccccccccccccc-----------------
Confidence            57889999999999999998763     48889999999999999999999999999887665                 


Q ss_pred             cccchhhhhhcCCccCCccCCCCCCCccccCCCCCCCCccCCCCCCCCCccccchhhhHHHHHHHHhhccCCCcchhhhh
Q 041922          119 LEDKEHHREKRGTYMGLSSNDDHGKSSRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT  198 (523)
Q Consensus       119 ~~~v~~l~~~~~~~~~l~~~d~~g~tpLh~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (523)
                                                                                                      
T Consensus        61 --------------------------------------------------------------------------------   60 (130)
T d1ycsb1          61 --------------------------------------------------------------------------------   60 (130)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhcccccCCCChHHHHHHHcChHHHHHHHHhhCCCccccccc-CCCcHHHHH--HHcCchhHHHHHHhccc
Q 041922          199 AAVQELKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDS-EKKNLVLLA--VENRQTGIYKLLLDRKM  275 (523)
Q Consensus       199 ~~~~~v~~Ll~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A--~~~~~~~iv~~Ll~~~~  275 (523)
                                  +.+|.+|+||||+|+.+|+.+++++|+++ |++++..+. .|+||++++  +++|+.+++++|++.+.
T Consensus        61 ------------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          61 ------------NAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             ------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             ------------ccccccCcccccccchhhHHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence                        23445688899999999999999999987 888887764 588887765  56788999999987654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-22  Score=168.60  Aligned_cols=73  Identities=18%  Similarity=0.100  Sum_probs=67.1

Q ss_pred             cChHHHHHHHHhhCCCcccccccCCC-cHHHHHHHcCchhHHHHHHhccccCCccccccccccCCCCcHhHHHHHhCCCC
Q 041922          227 MGVTEMVEKILDTIPVAIHDLDSEKK-NLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDIKGNSALHLAAKFGEYG  305 (523)
Q Consensus       227 ~g~~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~~G~TpLH~Aa~~~~~~  305 (523)
                      .|+.+++++|+++ |++++.+|..|. ||||+|+++|+.+++++|+++|+       +++.+|.+|+||||+|++.|+.+
T Consensus        45 ~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga-------~~~~~d~~G~T~l~~A~~~g~~~  116 (125)
T d1bi7b_          45 MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-------RLDVRDAWGRLPVDLAEELGHRD  116 (125)
T ss_dssp             TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC-------CSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccc-------ccccccCCCCCHHHHHHHcCCHH
Confidence            4678999999997 899999998876 69999999999999999999999       99999999999999999999966


Q ss_pred             Cc
Q 041922          306 PW  307 (523)
Q Consensus       306 ~~  307 (523)
                      ++
T Consensus       117 ~v  118 (125)
T d1bi7b_         117 VA  118 (125)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.4e-21  Score=160.64  Aligned_cols=87  Identities=16%  Similarity=0.094  Sum_probs=77.1

Q ss_pred             ccCCCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccccCCccccccccccC-CC
Q 041922          213 QSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGESDLNIFEHVDI-KG  291 (523)
Q Consensus       213 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~in~~d~-~G  291 (523)
                      +|.+|+||||+|+..|+.+++++|++. +++++.+|.+|+||||+|+.+|+.+++++|+++|+       +++.++. +|
T Consensus        30 ~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-------~v~~~~~~~~  101 (130)
T d1ycsb1          30 PNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA-------AVFAMTYSDM  101 (130)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-------CTTCCCSSSC
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccCcccccccchhhHHHHHHHHHHcCC-------CcccccCCCC
Confidence            455689999999999999999999998 89999999999999999999999999999999999       8888774 68


Q ss_pred             CcHhHHH--HHhCCCCCc
Q 041922          292 NSALHLA--AKFGEYGPW  307 (523)
Q Consensus       292 ~TpLH~A--a~~~~~~~~  307 (523)
                      +||++++  ++.|+.+++
T Consensus       102 ~~~~~~~~a~~~g~~eiv  119 (130)
T d1ycsb1         102 QTAADKCEEMEEGYTQCS  119 (130)
T ss_dssp             CCHHHHCCSSSTTCCCHH
T ss_pred             CCHHHHHHHHHcChHHHH
Confidence            9987776  466776654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.6e-20  Score=160.79  Aligned_cols=59  Identities=12%  Similarity=0.084  Sum_probs=29.0

Q ss_pred             CCChHHHHHHHcChHHHHHHHHhhCCCcccccccCCCcHHHHHHHcCchhHHHHHHhccc
Q 041922          216 RKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKM  275 (523)
Q Consensus       216 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  275 (523)
                      +|.||||+|++.|+.+++++|+++ |++++.+|.+|+||||+|+++|+.+++++|++.++
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhcccccccccccccccccccccc-CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            344444444444455555554443 44445555555555555555555555555554443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2e-20  Score=160.23  Aligned_cols=92  Identities=25%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc----cccccCCCCCcHHHHHHHc---CCHHHHHHHHHHhcccccccccccccCCCh
Q 041922            5 CLSKFAMRGQWDNFVQAYENNPMS----REAKLTRSGDTALHIAAAA---GQTNIVSELVEIMGENASNVLKIQNDRGDT   77 (523)
Q Consensus         5 ~L~~Aa~~g~~~~v~~ll~~~~~~----~~~~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~d~~G~T   77 (523)
                      .|++|++.+++..+..++......    .....+..|+||||+|++.   |+.+++++|++.|.     +++.+|.+|+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-----din~~d~~g~T   83 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-----NLDKQTGKGST   83 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-----CTTCCCTTCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC-----Chhhhhhhhcc
Confidence            577899999999999999873221    1223377899999999975   67899999999864     59999999999


Q ss_pred             HHhHHHHcCCHHHHHHHHhcCccc
Q 041922           78 ALHLAAALGNEAMCHCMASKDREL  101 (523)
Q Consensus        78 pLh~A~~~g~~~iv~~Ll~~~~~~  101 (523)
                      |||+|++.|+.+++++|+++|+++
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad~  107 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKASI  107 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccccccccccccccccccCccc
Confidence            999999999999999999999876