Citrus Sinensis ID: 041926

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEANYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI
cccccccHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccHHHHccccccccccccccHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHccccEEccccHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccc
HccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHcHHHcHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHEEccccc
mlkadnkpsrTLELIDAIQRLGVSYHFESEIDEILGRVHQayqdsdlcvnendglYYISLQFRLLRgngyrisadvfnkfrdidgnfkpslaKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYisiypeesshnEALLTFAKLDFNKLQKLHQKELSDISKWWKEldfahnlpfTIRDRIAECYFWAVAVyfepqyslgrrLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHyakeanyipsvdeYMTVAsvtsgypmlsttsfvgmgdivtKESFewslsnprvIRASSVAARLMNDMVSHkfeqsrghvASCVECYMKQYGATEEEACNEFRKQVSNAWKDVneeclrptvvpmpLLMRILNLTRFLDVVYRfedgythsAVVLKDFVASllinpvsi
mlkadnkpsrtLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFnkfrdidgnfkpslaKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEANYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKEsfewslsnpRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI
MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEANYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI
***********LELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEANYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLIN****
******KPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEANYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHK**Q**GHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI
*********RTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEANYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI
****DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEANYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI
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MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEANYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKDFVASLLINPVSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.985 0.854 0.636 0.0
F6M8H7562 Probable sesquiterpene sy N/A no 0.985 0.846 0.561 1e-169
F6M8H5562 Probable sesquiterpene sy N/A no 0.985 0.846 0.565 1e-168
B5A435559 Sesquiterpene synthase OS N/A no 0.985 0.851 0.565 1e-167
F6M8H4559 Probable sesquiterpene sy N/A no 0.985 0.851 0.561 1e-167
E3W208562 Sesquiterpene synthase OS N/A no 0.989 0.850 0.553 1e-163
F6M8H6562 Probable sesquiterpene sy N/A no 0.989 0.850 0.551 1e-162
E3W207559 Sesquiterpene synthase OS N/A no 0.985 0.851 0.549 1e-162
Q6Q3H2556 Valencene synthase OS=Vit no no 0.971 0.843 0.560 1e-159
Q43714555 (+)-delta-cadinene syntha N/A no 0.964 0.839 0.521 1e-148
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/500 (63%), Positives = 382/500 (76%), Gaps = 24/500 (4%)

Query: 1   MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISL 60
           ++ AD+  ++ L LIDAIQRLGV+YHFESEIDE+L  +     D  +   E D +Y  SL
Sbjct: 65  LMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMF----DGSVVSAEED-VYTASL 119

Query: 61  QFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHA 120
           +FRLLR  GY +S D+FN F+D +GNFK SL+ DVRGMLSLYEATH RVH E+ILDEA A
Sbjct: 120 RFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDEALA 179

Query: 121 FATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFA 180
           F T+HL+S AT   S+PLAEQV HAL QPI KG+ RLEARHY S+Y  + SHN+ALL  A
Sbjct: 180 FTTTHLQS-ATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKALLKLA 238

Query: 181 KLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRR 240
           KLDFN LQKLHQKELSDIS WWK+LDFAH LPF  RDR+ ECYFW + VYFEPQ+   RR
Sbjct: 239 KLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFA-RDRVVECYFWILGVYFEPQFFFARR 297

Query: 241 LLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSE 300
           +L KV  MTSI+DDIYDVYG  EELELFT A+ERWDI AID+LPEYM++CY+ALL VYSE
Sbjct: 298 ILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSE 357

Query: 301 AEKDLASQGKLYHLHYAKEA-----------------NYIPSVDEYMTVASVTSGYPMLS 343
            E+++A +G+ Y L+YAKEA                   IP+++EYM VA VTS Y ML+
Sbjct: 358 IEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLA 417

Query: 344 TTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMK 403
           TTSFVGMGD VTKESF+W  S P+++RAS++  RLM+DMV HKFEQ RGHVAS VECYMK
Sbjct: 418 TTSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMK 477

Query: 404 QYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYT 463
           Q+GA+E+E  NEF + V  AWKD+NEECL PT VPMP+LMR+LNL R +DV+Y+ EDGYT
Sbjct: 478 QHGASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYT 537

Query: 464 HSAVVLKDFVASLLINPVSI 483
           H   VLKDFV S+LI+PV I
Sbjct: 538 HFGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
322424205541 germacrene D synthase [Citrus hystrix] 0.993 0.887 0.77 0.0
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.985 0.854 0.644 0.0
147828675557 hypothetical protein VITISV_013313 [Viti 0.985 0.854 0.644 0.0
147856860557 hypothetical protein VITISV_030783 [Viti 0.985 0.854 0.64 0.0
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.985 0.854 0.634 0.0
75223414557 RecName: Full=(-)-germacrene D synthase 0.985 0.854 0.636 0.0
347664489557 (E)-beta-caryophyllene synthase [Vitis v 0.985 0.854 0.634 0.0
225470617560 PREDICTED: (-)-germacrene D synthase [Vi 0.989 0.853 0.598 1e-174
302143187 725 unnamed protein product [Vitis vinifera] 0.923 0.615 0.631 1e-174
41058926561 (-)-germacrene D synthase [Populus trich 0.985 0.848 0.598 1e-174
>gi|322424205|gb|ADX01384.1| germacrene D synthase [Citrus hystrix] Back     alignment and taxonomy information
 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/500 (77%), Positives = 419/500 (83%), Gaps = 20/500 (4%)

Query: 1   MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISL 60
           MLKA NK S TLELIDAIQRLGVSYHFESEIDEILG++H+ Y+D DLC NEND LYYISL
Sbjct: 45  MLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISL 104

Query: 61  QFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHA 120
           QFRL R NGYRISADVFN F+  DG FK SLAKDVRGMLSLYEATHLRVH ENILDEA A
Sbjct: 105 QFRLFRQNGYRISADVFNTFKGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALA 164

Query: 121 FATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFA 180
           F TSHLES+A  Q+ SPL EQVKHAL QPIHKG++RLEARHYI IY  ESSHNEALLTFA
Sbjct: 165 FTTSHLESVAK-QVCSPLVEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFA 223

Query: 181 KLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRR 240
           KL FN LQKLHQKEL DIS+WWKELDFAH LPF +RDRIAE YFWAV V+FEPQYS  R+
Sbjct: 224 KLGFNGLQKLHQKELGDISRWWKELDFAHKLPF-VRDRIAEVYFWAVGVHFEPQYSFTRK 282

Query: 241 LLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSE 300
           L  KV  MTSI+DDIYDVYGK EEL+LFTSAIERWDI AID+LPEYMKLC RAL++VYSE
Sbjct: 283 LFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCIRALINVYSE 342

Query: 301 AEKDLASQGKLYHLHYAKEA-----------------NYIPSVDEYMTVASVTSGYPMLS 343
            EKDL SQGKLY LHYAKEA                 NY+P+VDEYMTVA ++SG+P LS
Sbjct: 343 VEKDLVSQGKLYRLHYAKEAMKNQVKHYFFEAKWCHQNYVPTVDEYMTVALISSGHPNLS 402

Query: 344 TTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMK 403
           T SFVG+GDIVTKESFEW  SNPR IRAS    RLMNDMVSHKFEQSRGHVAS VECY+ 
Sbjct: 403 TISFVGLGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYIN 462

Query: 404 QYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYT 463
           QYGATEEEA +EFRKQVSNAWKD+NEECLRPTVVP+PLLMRILNLTR  DV+Y+++DGYT
Sbjct: 463 QYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLMRILNLTRAADVIYKYKDGYT 522

Query: 464 HSAVVLKDFVASLLINPVSI 483
           +S   LKDF+ SLLINPV I
Sbjct: 523 YSE-ELKDFIVSLLINPVPI 541

Source: Citrus hystrix

Species: Citrus hystrix

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225470617|ref|XP_002263580.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143187|emb|CBI20482.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|41058926|gb|AAR99061.1| (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.629 0.532 0.532 2.7e-128
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.987 0.859 0.472 1.1e-117
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.979 0.846 0.475 2.2e-112
UNIPROTKB|B2KSJ6560 B2KSJ6 "Alpha-farnesene syntha 0.639 0.551 0.484 2.1e-109
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.648 0.564 0.463 3.4e-109
TAIR|locus:2178657547 TPS21 "terpene synthase 21" [A 0.643 0.568 0.434 1.4e-103
UNIPROTKB|D0VMR6547 C2 "Delta-guaiene synthase 1" 0.635 0.561 0.459 5.8e-103
UNIPROTKB|D0VMR8547 C4 "Delta-guaiene synthase 3" 0.635 0.561 0.459 5.8e-103
UNIPROTKB|D0VMR7547 C3 "Delta-guaiene synthase 2" 0.635 0.561 0.456 1.5e-102
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.879 0.767 0.456 3.4e-100
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
 Score = 833 (298.3 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
 Identities = 166/312 (53%), Positives = 214/312 (68%)

Query:    12 LELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNEN---DGLYYISLQFRLLRGN 68
             L L+D+IQRLGVSYHFE E+DE L  ++ +Y +S L  N+N   + L+  +L FRLLR  
Sbjct:    78 LNLVDSIQRLGVSYHFEDEVDEFLEHIYVSYNNSLLLSNKNSNGEDLHITALLFRLLRQQ 137

Query:    69 GYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLES 128
             GYRIS D+F KF D +G FK SL +D RG+LSLYEA+H+  H E +L+EA  F T+HL++
Sbjct:   138 GYRISCDIFLKFMDDNGKFKESLVEDERGLLSLYEASHMMGHGEALLEEALEFTTTHLQT 197

Query:   129 IATHQISS--P-LAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFN 185
                H+ S+  P  A +V +AL  PI K V R++AR Y+ IY +  SHNE LL F+KLDFN
Sbjct:   198 YI-HRYSNINPSFASEVSNALKLPIRKSVPRIKAREYLEIYQQHPSHNETLLEFSKLDFN 256

Query:   186 KLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKV 245
              LQKLHQKELS+I +WWK+LD     PF  RDRI ECYFW +  YFEPQYS+GR++L KV
Sbjct:   257 ILQKLHQKELSEICRWWKDLDVPTKFPFA-RDRIVECYFWTLGAYFEPQYSVGRKMLTKV 315

Query:   246 FPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDL 305
               + SILDDIYD YG FEEL++ T AI+RWD   +  LP YMK  Y A+L++Y E  K++
Sbjct:   316 IAIASILDDIYDAYGTFEELQVLTPAIQRWDRSMVHTLPLYMKPFYVAMLELYEEIGKEI 375

Query:   306 ASQGKLYHLHYA 317
                    HL  A
Sbjct:   376 DKDQNSLHLQVA 387
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA
GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR7 C3 "Delta-guaiene synthase 2" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
J9RLZ7TPS1_VALOF4, ., 2, ., 3, ., 7, 50.50710.96270.8259N/Ano
P93665DCS1_GOSHI4, ., 2, ., 3, ., 1, 30.51940.96060.8375N/Ano
O49853DCS4_GOSAR4, ., 2, ., 3, ., 1, 30.52030.96680.8429N/Ano
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.42140.99170.8756yesno
F6M8H5SAUST_SANAS4, ., 2, ., 3, ., -0.56560.98550.8469N/Ano
F6M8H4SAST_SANAL4, ., 2, ., 3, ., -0.56160.98550.8515N/Ano
F6M8H7SMST_SANMU4, ., 2, ., 3, ., -0.56160.98550.8469N/Ano
F6M8H6SPIST_SANSP4, ., 2, ., 3, ., -0.55130.98960.8505N/Ano
Q43714DCS3_GOSAR4, ., 2, ., 3, ., 1, 30.52120.96480.8396N/Ano
Q39760DCS2_GOSAR4, ., 2, ., 3, ., 1, 30.52430.96680.8429N/Ano
Q39761DCS1_GOSAR4, ., 2, ., 3, ., 1, 30.52030.96680.8429N/Ano
E3W207SAUSS_SANAS4, ., 2, ., 3, ., -0.54940.98550.8515N/Ano
E3W208SPISS_SANSP4, ., 2, ., 3, ., -0.55330.98960.8505N/Ano
B5A435STPS1_SANAL4, ., 2, ., 3, ., -0.56560.98550.8515N/Ano
B2KSJ5GCSY1_CUCME4, ., 2, ., 3, ., 9, 20.50700.97100.8213N/Ano
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.6360.98550.8545yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-110
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-110
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 4e-63
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-44
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 8e-33
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-32
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 5e-20
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  666 bits (1722), Expect = 0.0
 Identities = 256/503 (50%), Positives = 334/503 (66%), Gaps = 26/503 (5%)

Query: 1   MLKADNKPS---RTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYY 57
           ML+    P      L LID +QRLG+SYHFE EI EIL  +++ + +     NE+D LY 
Sbjct: 43  MLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERG-ESNEDD-LYT 100

Query: 58  ISLQFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDE 117
            +L FRLLR +GY +S+DVF KF+D DG FK SL +DV+GMLSLYEA+HL    E+ILDE
Sbjct: 101 TALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDE 160

Query: 118 AHAFATSHLESIATHQ--ISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEA 175
           A +F T HLE        I   L+ ++++AL  P+H  + RLEAR YI  Y +E  HNE 
Sbjct: 161 ALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNET 220

Query: 176 LLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQY 235
           LL  AKLDFN LQ LHQ+EL  +S+WWK+LD A  LPF  RDR+ ECYFWA   YFEPQY
Sbjct: 221 LLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFA-RDRLVECYFWAAGTYFEPQY 279

Query: 236 SLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALL 295
           SL R  LAK   + +++DD YDVYG  EELELFT A+ERWDI AID+LPEYMK+ ++ALL
Sbjct: 280 SLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALL 339

Query: 296 DVYSEAEKDLASQGKLYHLHYAKEA-----------------NYIPSVDEYMTVASVTSG 338
           +  +E E++L  +G  Y + Y KEA                  Y+P+ +EYM  A V+ G
Sbjct: 340 NTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIG 399

Query: 339 YPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCV 398
              L  TSF+GMGDI+T+E+FEW  S P+++RASS   RLMND+ +++ E  RG VAS +
Sbjct: 400 LGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSI 459

Query: 399 ECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRP-TVVPMPLLMRILNLTRFLDVVYR 457
           ECYMK+YG +EEEA  E +K + +AWK++NEE L+P + VP P+  R LNL R +DV Y+
Sbjct: 460 ECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYK 519

Query: 458 FEDGYTHSAVVLKDFVASLLINP 480
             DG+TH    +KD + SLL  P
Sbjct: 520 EGDGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.73
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 96.82
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 96.7
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 84.95
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 82.86
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 81.51
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 81.31
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.1e-141  Score=1149.18  Aligned_cols=472  Identities=53%  Similarity=0.905  Sum_probs=452.6

Q ss_pred             CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccCCCCChhHHHHHHHHhhcCCccccccccccccccc
Q 041926            5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDID   84 (483)
Q Consensus         5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~i~~~~~~~dl~~~al~FRLLR~hGy~vs~dvf~~F~d~~   84 (483)
                      +.|++++|++||+||||||+|||++||+++|++||++|.+.. . ....||++|||+|||||||||+||||||++|+|++
T Consensus        50 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-~-~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~  127 (542)
T cd00684          50 PVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERG-E-SNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDED  127 (542)
T ss_pred             CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccc-c-ccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCC
Confidence            568999999999999999999999999999999999984410 1 13579999999999999999999999999999999


Q ss_pred             cccccccccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhh---cCCCchHHHHHHhcCCCccCCchhhHHhh
Q 041926           85 GNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATH---QISSPLAEQVKHALFQPIHKGVQRLEARH  161 (483)
Q Consensus        85 g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~~~~~l~~~V~~aL~~P~~~~~~r~e~r~  161 (483)
                      |+|++++.+||+||||||||||+++|||+|||||++||++||++++++   + +++|+++|++||++|||+++||+|||+
T Consensus       128 g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~  206 (542)
T cd00684         128 GKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWII-DPDLSGEIEYALEIPLHASLPRLEARW  206 (542)
T ss_pred             CCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHccCchhcCCchHHHHH
Confidence            999999999999999999999999999999999999999999999986   5 889999999999999999999999999


Q ss_pred             hhhhcCCCCcCcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHHH
Q 041926          162 YISIYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRL  241 (483)
Q Consensus       162 yI~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri~  241 (483)
                      ||++|++++++|++||||||+|||+||++||+||+++++||+++||.+++|| +|+|+++||||++|++|+|++|.+|++
T Consensus       207 yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~-aRdr~ve~yf~~~a~~feP~~s~~Rl~  285 (542)
T cd00684         207 YIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPF-ARDRLVECYFWAAGTYFEPQYSLARIA  285 (542)
T ss_pred             HHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCc-ccchhHHHHHHHHhcccCccchHHHHH
Confidence            9999999999999999999999999999999999999999999999988899 999999999999999999999999999


Q ss_pred             HHhhhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHh-
Q 041926          242 LAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEA-  320 (483)
Q Consensus       242 ~aK~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e~-  320 (483)
                      +||+++|+|++||+||.|||.+|++.||+||+|||.++++++|+|||+||.+|++++++++..+.++++.+.+.+++++ 
T Consensus       286 ~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~  365 (542)
T cd00684         286 LAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAW  365 (542)
T ss_pred             HHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999888877776666655554 


Q ss_pred             ----------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccc
Q 041926          321 ----------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVS  384 (483)
Q Consensus       321 ----------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S  384 (483)
                                      ||+||++|||++|.+|+|++++++++++++|+.+|+++++|+..+|+|+++++.++||+|||+|
T Consensus       366 ~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S  445 (542)
T cd00684         366 KDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIAT  445 (542)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhh
Confidence                            9999999999999999999999999999999999999999977779999999999999999999


Q ss_pred             hhhhhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhhhhhcccCCCCC
Q 041926          385 HKFEQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRP-TVVPMPLLMRILNLTRFLDVVYRFEDGYT  463 (483)
Q Consensus       385 ~~~E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t  463 (483)
                      +++|+++|+++|+|.|||+|+|+|+|+|++++++||+++||++|++++++ +++|++|+++++|+||+++++|+++||||
T Consensus       446 ~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t  525 (542)
T cd00684         446 YEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFT  525 (542)
T ss_pred             hHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99999999999999999999999999999999999999999999999987 78999999999999999999999999999


Q ss_pred             CCchhHHHHHHhhhccc
Q 041926          464 HSAVVLKDFVASLLINP  480 (483)
Q Consensus       464 ~~~~~~k~~i~~ll~~p  480 (483)
                      .|+..+|++|++||++|
T Consensus       526 ~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         526 HPEGEIKDHITSLLFEP  542 (542)
T ss_pred             CccHHHHHHHHHHhcCC
Confidence            99878999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-146
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-129
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-129
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-128
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-128
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-128
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-128
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-128
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-126
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-126
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-89
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 6e-82
2j5c_A569 Rational Conversion Of Substrate And Product Specif 8e-76
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 4e-74
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 2e-72
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-66
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 9e-64
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 7e-25
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  516 bits (1328), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/492 (52%), Positives = 340/492 (69%), Gaps = 25/492 (5%)
Query: 9   SRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGN 68
           ++ L  ID++QRLGVSYHF  EI++ L  ++    D+     END LY  S++FRLLR +
Sbjct: 71  TQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA-----END-LYTTSIRFRLLREH 124
Query: 69  GYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLES 128
           GY +S DVFNKF+D  GNFK S+  DVRG+L LY+A++LRVH E+ILDEA +F T HL S
Sbjct: 125 GYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHL-S 183
Query: 129 IATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFAKLDFNKLQ 188
           +A   +  PL+E+V HAL Q I +G+ R+EARHY+S+Y +  SHN+ALL FAK+DFN LQ
Sbjct: 184 LAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQ 243
Query: 189 KLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPM 248
            LH+KELS+I +WWK+LDF   LP+  RDR+ E YFW   VYFEPQYSLGR++L KV  M
Sbjct: 244 FLHRKELSEICRWWKDLDFQRKLPYA-RDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAM 302
Query: 249 TSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQ 308
            SI+DD YD Y  +EEL  +T+AIERWDI  IDE+PEYMK  Y+ALLDVY E  + +A  
Sbjct: 303 ASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEH 362
Query: 309 GKLYHLHYAKEA-----------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMG 351
           G+ Y + YAK A                 NY PS +E+   A  T GY ML+ TSFVGMG
Sbjct: 363 GRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMG 422
Query: 352 DIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMKQYGATEEE 411
           DIVT E+F+W+ S+P++I+AS++  R M+D+  HKF+  R    S +ECYM++YG T +E
Sbjct: 423 DIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQE 482
Query: 412 ACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAVVLKD 471
           A + F K V +AWKD+N+E L+PT +P  +L R LNL R +DV+YR  DGYT+     K 
Sbjct: 483 AYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKG 542
Query: 472 FVASLLINPVSI 483
            + SLLI P+++
Sbjct: 543 GITSLLIEPIAL 554
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-179
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-177
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-176
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-174
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-173
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-172
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-155
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-153
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-152
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-90
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-32
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-29
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 6e-18
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 3e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  513 bits (1322), Expect = e-179
 Identities = 250/500 (50%), Positives = 337/500 (67%), Gaps = 25/500 (5%)

Query: 1   MLKADNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISL 60
           ++      ++ L  ID++QRLGVSYHF  EI++ L  ++    D++      + LY  S+
Sbjct: 63  IVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE------NDLYTTSI 116

Query: 61  QFRLLRGNGYRISADVFNKFRDIDGNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHA 120
           +FRLLR +GY +S DVFNKF+D  GNFK S+  DVRG+L LY+A++LRVH E+ILDEA +
Sbjct: 117 RFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAIS 176

Query: 121 FATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYISIYPEESSHNEALLTFA 180
           F T HL       +  PL+E+V HAL Q I +G+ R+EARHY+S+Y +  SHN+ALL FA
Sbjct: 177 FTTHHLSLAVAS-LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFA 235

Query: 181 KLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRR 240
           K+DFN LQ LH+KELS+I +WWK+LDF   LP+  RDR+ E YFW   VYFEPQYSLGR+
Sbjct: 236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYA-RDRVVEGYFWISGVYFEPQYSLGRK 294

Query: 241 LLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSE 300
           +L KV  M SI+DD YD Y  +EEL  +T+AIERWDI  IDE+PEYMK  Y+ALLDVY E
Sbjct: 295 MLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEE 354

Query: 301 AEKDLASQGKLYHLHYAKE-----------------ANYIPSVDEYMTVASVTSGYPMLS 343
             + +A  G+ Y + YAK                   NY PS +E+   A  T GY ML+
Sbjct: 355 MVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLA 414

Query: 344 TTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHVASCVECYMK 403
            TSFVGMGDIVT E+F+W+ S+P++I+AS++  R M+D+  HKF+  R    S +ECYM+
Sbjct: 415 ITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYME 474

Query: 404 QYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYT 463
           +YG T +EA + F K V +AWKD+N+E L+PT +P  +L R LNL R +DV+YR  DGYT
Sbjct: 475 EYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYT 534

Query: 464 HSAVVLKDFVASLLINPVSI 483
           +     K  + SLLI P+++
Sbjct: 535 YVGKAAKGGITSLLIEPIAL 554
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.95
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.56
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=9.5e-154  Score=1231.98  Aligned_cols=471  Identities=53%  Similarity=0.932  Sum_probs=446.2

Q ss_pred             CCCccchhhhhHHHHHhCCccccHHHHHHHHHHHHhhcCCCccccCCCCChhHHHHHHHHhhcCCccccccccccccccc
Q 041926            5 DNKPSRTLELIDAIQRLGVSYHFESEIDEILGRVHQAYQDSDLCVNENDGLYYISLQFRLLRGNGYRISADVFNKFRDID   84 (483)
Q Consensus         5 ~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~i~~~~~~~dl~~~al~FRLLR~hGy~vs~dvf~~F~d~~   84 (483)
                      ..|++++|+|||+||||||+|||++||+++|++||+.  +   . ..+.||++|||+|||||||||+||||||++|+|++
T Consensus        67 ~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~--~---~-~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~  140 (554)
T 3g4d_A           67 MANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN--N---N-DAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQ  140 (554)
T ss_dssp             CSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS--C---C-CTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTT
T ss_pred             ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc--c---C-CCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccC
Confidence            4689999999999999999999999999999999986  1   2 13379999999999999999999999999999999


Q ss_pred             cccccccccchhhHhhHHhhhccCCCCchHHHHHHHHHHHHHHhHhhhcCCCchHHHHHHhcCCCccCCchhhHHhhhhh
Q 041926           85 GNFKPSLAKDVRGMLSLYEATHLRVHEENILDEAHAFATSHLESIATHQISSPLAEQVKHALFQPIHKGVQRLEARHYIS  164 (483)
Q Consensus        85 g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~r~e~r~yI~  164 (483)
                      |+|++++.+||+||||||||||+++|||+|||||++||++||++.++++ +++|+++|+|||++|||+++||+|||+||+
T Consensus       141 g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~  219 (554)
T 3g4d_A          141 GNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYLS  219 (554)
T ss_dssp             SSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHH
T ss_pred             CCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998777 788999999999999999999999999999


Q ss_pred             hcCCCCcCcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHHHHHh
Q 041926          165 IYPEESSHNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAK  244 (483)
Q Consensus       165 ~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri~~aK  244 (483)
                      +|++++++|++||||||||||+||++||+||++++||||++||.++||| +|||++|||||++|++|||+||.+|+++||
T Consensus       220 ~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~f-aRdr~ve~yfw~~~~~feP~~s~~R~~~aK  298 (554)
T 3g4d_A          220 VYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPY-ARDRVVEGYFWISGVYFEPQYSLGRKMLTK  298 (554)
T ss_dssp             HHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTT-CCCCHHHHHHHHHHHCCSGGGHHHHHHHHH
T ss_pred             HhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCc-hHHHHHHHHHHHHHhhCCccccHHHHHHHH
Confidence            9999999999999999999999999999999999999999999889999 999999999999999999999999999999


Q ss_pred             hhhhhhhccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHh----
Q 041926          245 VFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEA----  320 (483)
Q Consensus       245 ~~~li~~iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e~----  320 (483)
                      +++|++++||+||+|||+|||++||+||+|||++++++||+|||+||.+|+++++|++.++.++||.++++|++++    
T Consensus       299 ~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l  378 (554)
T 3g4d_A          299 VIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRL  378 (554)
T ss_dssp             HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988899988888888776    


Q ss_pred             -------------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhh
Q 041926          321 -------------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKF  387 (483)
Q Consensus       321 -------------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~  387 (483)
                                   ||+||+||||+||.+|+|+++++++++++||+.+|+|+++|++++|+|+++++.|+||+|||+|+++
T Consensus       379 ~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~  458 (554)
T 3g4d_A          379 AQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKF  458 (554)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhh
Confidence                         9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCccchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCCch
Q 041926          388 EQSRGHVASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFEDGYTHSAV  467 (483)
Q Consensus       388 E~~~G~~~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~  467 (483)
                      |+++|+++|+|+|||+|+|+|+|+|++++++||+++||+||++|++++++|++|+++++|+||++++||+++||||.|+.
T Consensus       459 E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~  538 (554)
T 3g4d_A          459 KHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGK  538 (554)
T ss_dssp             ------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCH
T ss_pred             hhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccH
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999977


Q ss_pred             hHHHHHHhhhccccCC
Q 041926          468 VLKDFVASLLINPVSI  483 (483)
Q Consensus       468 ~~k~~i~~ll~~pi~i  483 (483)
                      .+|++|++||++|||+
T Consensus       539 ~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          539 AAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHhcCCCCC
Confidence            8999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 483
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-138
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-136
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-61
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 7e-58
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 7e-51
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 1e-35
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  398 bits (1023), Expect = e-138
 Identities = 101/328 (30%), Positives = 167/328 (50%), Gaps = 19/328 (5%)

Query: 173 NEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFE 232
           N  +   AKL+FN +Q  HQ+EL D+S+WW  L F   LPF  RDR+ E +FWAV ++  
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFV-RDRLVESFFWAVGMFEP 60

Query: 233 PQYSLGRRLLAKVFPMTSILDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYR 292
            Q+   R++ A +  + +++DDIYDVYG  +ELELFT   +RWD  +I  LP YM+LCY 
Sbjct: 61  HQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYW 120

Query: 293 ALLDVYSEAEKDLASQGKLYHLHYAKEA-----------------NYIPSVDEYMTVASV 335
            + +  S+A  D+  +   + L Y +++                  Y PS+DEY+ +A +
Sbjct: 121 GVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 180

Query: 336 TSGYPMLSTTSFVGMGDIVTKES-FEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHV 394
           +   P + + ++    +     +  +       ++  + +  RL +D+ +  FE +RG V
Sbjct: 181 SVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV 240

Query: 395 ASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDV 454
              ++CYMK+  A+EEEA    +  +  AWKD+N         P  ++    N+ R    
Sbjct: 241 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQF 300

Query: 455 VYRFEDGYTHSAVVLKDFVASLLINPVS 482
           +Y   DG+        + +A LL  P +
Sbjct: 301 IYLHGDGFGVQHSKTYEHIAGLLFEPYA 328
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.94
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.05
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.2e-95  Score=739.97  Aligned_cols=310  Identities=48%  Similarity=0.899  Sum_probs=293.3

Q ss_pred             CcHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHhhhccCCCcchhHHHHHhhhhhhhh
Q 041926          172 HNEALLTFAKLDFNKLQKLHQKELSDISKWWKELDFAHNLPFTIRDRIAECYFWAVAVYFEPQYSLGRRLLAKVFPMTSI  251 (483)
Q Consensus       172 ~n~~lLelAkldfn~~Q~~hq~El~~l~rWwk~~~l~~~l~f~aRdr~ve~yfw~~a~~feP~~s~~Ri~~aK~~~li~~  251 (483)
                      .|++||||||||||+||++||+||+.++|||+++|+.+++|| +|||++|||||++|++|||+||.+|+++||+++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~-aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti   79 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPY-ARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISI   79 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTT-SCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCc-hHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999999889999 9999999999999999999999999999999999999


Q ss_pred             ccccccccCCHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHh-----------
Q 041926          252 LDDIYDVYGKFEELELFTSAIERWDICAIDELPEYMKLCYRALLDVYSEAEKDLASQGKLYHLHYAKEA-----------  320 (483)
Q Consensus       252 iDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lpeymk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~e~-----------  320 (483)
                      +||+||+|||+||++.||+||+|||.+++++||+|||+||.+++++++|++.++.++||.++++|++++           
T Consensus        80 ~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~E  159 (328)
T d5easa2          80 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVE  159 (328)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998888888888776           


Q ss_pred             ------CCCCCHHHHHHhhhccccchhHHHHHHHhcCCCCchhhHhhccCchHHHHHHhhhhhhccCccchhhhhhcCCc
Q 041926          321 ------NYIPSVDEYMTVASVTSGYPMLSTTSFVGMGDIVTKESFEWSLSNPRVIRASSVAARLMNDMVSHKFEQSRGHV  394 (483)
Q Consensus       321 ------g~vPT~eEYl~~~~vSsg~~~~~~~~~~~~g~~l~~e~~e~~~~~~~i~~~~~~i~RL~NDi~S~~~E~~~G~~  394 (483)
                            ||+||+||||+||.+|+|++++++++++++|. +++|.++|++++|+|+++++.|+||+|||+|+++|+++|++
T Consensus       160 A~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~  238 (328)
T d5easa2         160 STWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQI  238 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCC
Confidence                  99999999999999999999999999999997 57889999999999999999999999999999999999999


Q ss_pred             cchhhHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCCchhHHHHH
Q 041926          395 ASCVECYMKQYGATEEEACNEFRKQVSNAWKDVNEECLRPTVVPMPLLMRILNLTRFLDVVYRFE-DGYTHSAVVLKDFV  473 (483)
Q Consensus       395 ~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~~~~~k~~i  473 (483)
                      +|+|+|||+|+|+|+|||+++++++|+++||+||+++++++++|++++++++|+||+++++|+++ ||||.|++.+|++|
T Consensus       239 ~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~i  318 (328)
T d5easa2         239 ATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI  318 (328)
T ss_dssp             TCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHHH
T ss_pred             CeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999987 99999987899999


Q ss_pred             HhhhccccCC
Q 041926          474 ASLLINPVSI  483 (483)
Q Consensus       474 ~~ll~~pi~i  483 (483)
                      ++||++||||
T Consensus       319 ~~ll~epi~~  328 (328)
T d5easa2         319 INLLVDSIKI  328 (328)
T ss_dssp             HHHHTCCCCC
T ss_pred             HHHhccCCcC
Confidence            9999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure