Citrus Sinensis ID: 041932

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP
ccEEEEEEcccHHHHHHHHHHccccccEEEEccEEEEEEccccccccEEEEcccccccccEEEEcccccEEEccccccccccccccccccEEcccEEEEEEEEEEEEEccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHcccEEEEccccccccccEEEEEEEEEEEccccccHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccEEEEcccccccccccHHHHHHHHccccccccc
cccEEEEHHccHHHHHHHHHHHccccEEEEEcccEEEEcHHEEccccEEEEEccccccccEEEEEccccEEccccccccccccccccccEEEEEcEEEEEEEEEEEEEcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccEEEcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHcccccccccccEEEEEccccccHHHHccccHHHHHHHHcccHHHccccHHHHHHHHHcHccccc
NSTVCFIQENNAGAASTALMAHLapkakvlrdgkwkeedaailvpgdvisvklgdivpadarllegdpltidqsaltgesltiskgpgdcvysgstckrgeIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYrtgldnllvpliggvpialPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMdvlccdktgtltlnkltvDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMladpkkvfhlfdfsslsgDQLAIAKETgrrlgmgtnmypssallgqdrddsivalpvdeliekadgfagvfp
NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAailvpgdvisvKLGDIVPADARLLEGDPLTIDQSAltgesltiskgpgDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKEtgrrlgmgTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP
NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP
***VCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGT**************DSIVALPVDELIEKADG******
NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP
NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP
*STVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQ**LTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTNMYPSSALLGQDRDDSIVALPVDELIEKADGFAGVFP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
Q08436 956 Plasma membrane ATPase 3 N/A no 0.810 0.294 0.797 1e-126
Q08435 957 Plasma membrane ATPase 1 N/A no 0.810 0.294 0.794 1e-126
Q9LV11 956 ATPase 11, plasma membran yes no 0.810 0.294 0.794 1e-125
P22180 956 Plasma membrane ATPase 1 N/A no 0.810 0.294 0.787 1e-125
Q9SU58 960 ATPase 4, plasma membrane no no 0.807 0.292 0.790 1e-124
Q03194 952 Plasma membrane ATPase 4 N/A no 0.810 0.296 0.755 1e-120
Q7XPY2 951 Plasma membrane ATPase OS no no 0.807 0.295 0.755 1e-119
Q9M2A0 948 ATPase 8, plasma membrane no no 0.810 0.297 0.748 1e-118
P19456 948 ATPase 2, plasma membrane no no 0.810 0.297 0.744 1e-118
P20431 949 ATPase 3, plasma membrane no no 0.810 0.297 0.741 1e-118
>sp|Q08436|PMA3_NICPL Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1 Back     alignment and function desciption
 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/282 (79%), Positives = 256/282 (90%)

Query: 1   NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
           NST+ FI+ENNAG A+ ALMA LAPKAKVLRDGKWKEEDAA+LVPGD+IS+KLGDI+PAD
Sbjct: 110 NSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWKEEDAAVLVPGDIISIKLGDIIPAD 169

Query: 61  ARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVH 120
           ARLLEGDPL IDQSALTGESL ++KGPGD VYSGSTCK+GEI+AVVIATGVHTF G+A H
Sbjct: 170 ARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAH 229

Query: 121 LVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGV 180
           LVD+TN VGHFQK+LTA+G +CICSIA+G+I+EIIVMY +QHR+YR G+DNLLV LIGG+
Sbjct: 230 LVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQHRKYRPGIDNLLVLLIGGI 289

Query: 181 PIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240
           PIA+PTVLSV MAIGS +L+ QG ITKRMTAI  MAGMDVLC DKTGTLTLNKLTVDK L
Sbjct: 290 PIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKYL 349

Query: 241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKK 282
           IE+FA+GVD DTVVLMAARAS+ EN D IDAA+VGMLADPK+
Sbjct: 350 IEVFARGVDADTVVLMAARASRTENQDAIDAAIVGMLADPKE 391
The plasma membrane ATPase of plants and fungi is a hydrogen ion pump. The proton gradient it generates drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses.
Nicotiana plumbaginifolia (taxid: 4092)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 6
>sp|Q08435|PMA1_NICPL Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LV11|PMA11_ARATH ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1 Back     alignment and function description
>sp|P22180|PMA1_SOLLC Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SU58|PMA4_ARATH ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=1 SV=2 Back     alignment and function description
>sp|Q03194|PMA4_NICPL Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1 Back     alignment and function description
>sp|Q7XPY2|PMA1_ORYSJ Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2A0|PMA8_ARATH ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1 Back     alignment and function description
>sp|P19456|PMA2_ARATH ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2 Back     alignment and function description
>sp|P20431|PMA3_ARATH ATPase 3, plasma membrane-type OS=Arabidopsis thaliana GN=AHA3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
356550952 916 PREDICTED: plasma membrane ATPase 1-like 0.810 0.307 0.808 1e-125
242060003 876 hypothetical protein SORBIDRAFT_03g04672 0.833 0.331 0.722 1e-125
242037073 959 hypothetical protein SORBIDRAFT_01g04844 0.833 0.302 0.726 1e-125
390190091 957 plasma membrane H+-ATPase [Marchantia po 0.810 0.294 0.762 1e-124
584795 956 RecName: Full=Plasma membrane ATPase 3; 0.810 0.294 0.797 1e-124
75214754 948 putative plasma membrane ATPase [Capsell 0.810 0.297 0.744 1e-124
584794 957 RecName: Full=Plasma membrane ATPase 1; 0.810 0.294 0.794 1e-124
379059756 956 plasma membrane H+-ATPase [Melastoma mal 0.810 0.294 0.797 1e-124
350535937 956 plasma membrane H+-ATPase [Solanum lycop 0.810 0.294 0.790 1e-124
15241907 956 H(+)-ATPase 11 [Arabidopsis thaliana] gi 0.810 0.294 0.794 1e-124
>gi|356550952|ref|XP_003543845.1| PREDICTED: plasma membrane ATPase 1-like [Glycine max] Back     alignment and taxonomy information
 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/282 (80%), Positives = 255/282 (90%)

Query: 1   NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
           NST+ FI+ENNAG A+ ALMA LAPKAK LRDGKW EEDA+ILVPGD+ISVKLGDI+PAD
Sbjct: 70  NSTISFIEENNAGNAAAALMARLAPKAKFLRDGKWIEEDASILVPGDIISVKLGDIIPAD 129

Query: 61  ARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVH 120
           ARLLEGDPL IDQSALTGESL ++KGPGD VYSGSTCK+GEI AVVIATGVHTF G+A H
Sbjct: 130 ARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEINAVVIATGVHTFFGKAAH 189

Query: 121 LVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGV 180
           LVD+TN VGHFQK+LTA+G +CICSIA+G+I+EIIVMY +QHREYR G+DNLLV LIGG+
Sbjct: 190 LVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHREYRPGIDNLLVLLIGGI 249

Query: 181 PIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240
           PIA+PTVLSV MAIGS +L+ QG ITKRMTAI  MAGMDVLC DKTGTLTLNKLTVDKNL
Sbjct: 250 PIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNL 309

Query: 241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKK 282
           IEIFAKGVDVDTVVLMAARA++LEN D IDAA+VGML DPK+
Sbjct: 310 IEIFAKGVDVDTVVLMAARAARLENQDAIDAAIVGMLGDPKE 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|242060003|ref|XP_002459147.1| hypothetical protein SORBIDRAFT_03g046720 [Sorghum bicolor] gi|241931122|gb|EES04267.1| hypothetical protein SORBIDRAFT_03g046720 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|242037073|ref|XP_002465931.1| hypothetical protein SORBIDRAFT_01g048440 [Sorghum bicolor] gi|241919785|gb|EER92929.1| hypothetical protein SORBIDRAFT_01g048440 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|390190091|dbj|BAM20989.1| plasma membrane H+-ATPase [Marchantia polymorpha] Back     alignment and taxonomy information
>gi|584795|sp|Q08436.1|PMA3_NICPL RecName: Full=Plasma membrane ATPase 3; AltName: Full=Proton pump 3 gi|170295|gb|AAA34098.1| plasma membrane H+ ATPase [Nicotiana plumbaginifolia] Back     alignment and taxonomy information
>gi|75214754|gb|ABA18104.1| putative plasma membrane ATPase [Capsella rubella] Back     alignment and taxonomy information
>gi|584794|sp|Q08435.1|PMA1_NICPL RecName: Full=Plasma membrane ATPase 1; AltName: Full=Proton pump 1 gi|170289|gb|AAA34094.1| plasma membrane H+ ATPase [Nicotiana plumbaginifolia] Back     alignment and taxonomy information
>gi|379059756|gb|AFC88896.1| plasma membrane H+-ATPase [Melastoma malabathricum] Back     alignment and taxonomy information
>gi|350535937|ref|NP_001234477.1| plasma membrane H+-ATPase [Solanum lycopersicum] gi|5901757|gb|AAD55399.1|AF179442_1 plasma membrane H+-ATPase isoform LHA2 [Solanum lycopersicum] gi|9789539|gb|AAF98344.1|AF275745_1 plasma membrane H+-ATPase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|15241907|ref|NP_201073.1| H(+)-ATPase 11 [Arabidopsis thaliana] gi|12230459|sp|Q9LV11.1|PMA11_ARATH RecName: Full=ATPase 11, plasma membrane-type; AltName: Full=Proton pump 11 gi|8809663|dbj|BAA97214.1| plasma membrane proton ATPase-like [Arabidopsis thaliana] gi|21928115|gb|AAM78085.1| AT5g62670/MRG21_9 [Arabidopsis thaliana] gi|38564278|gb|AAR23718.1| At5g62670/MRG21_9 [Arabidopsis thaliana] gi|332010258|gb|AED97641.1| H(+)-ATPase 11 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
TAIR|locus:2172244 956 HA11 "H(+)-ATPase 11" [Arabido 0.810 0.294 0.794 3.8e-144
TAIR|locus:2097895 960 HA4 "H(+)-ATPase 4" [Arabidops 0.807 0.292 0.790 1.3e-143
TAIR|locus:2044450 949 HA1 "H(+)-ATPase 1" [Arabidops 0.810 0.297 0.741 4e-136
TAIR|locus:2096549 948 HA8 "H(+)-ATPase 8" [Arabidops 0.810 0.297 0.748 1.7e-135
TAIR|locus:2165600 949 HA3 "H(+)-ATPase 3" [Arabidops 0.810 0.297 0.741 9.5e-135
TAIR|locus:2025727 954 HA9 "H(+)-ATPase 9" [Arabidops 0.810 0.295 0.719 9.5e-135
TAIR|locus:2046623 949 HA5 "H(+)-ATPase 5" [Arabidops 0.810 0.297 0.719 5.2e-134
TAIR|locus:2053343 949 HA6 "H(+)-ATPase 6" [Arabidops 0.810 0.297 0.741 2.9e-133
TAIR|locus:2081932 961 HA7 "H(+)-ATPase 7" [Arabidops 0.810 0.293 0.719 3e-129
TAIR|locus:2020372 947 AHA10 "autoinhibited H(+)-ATPa 0.810 0.297 0.691 2.7e-126
TAIR|locus:2172244 HA11 "H(+)-ATPase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1178 (419.7 bits), Expect = 3.8e-144, Sum P(2) = 3.8e-144
 Identities = 224/282 (79%), Positives = 256/282 (90%)

Query:     1 NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
             NST+ FI+ENNAG A+ ALMA LAPKAKVLRDG+W E+DAAILVPGD+IS+KLGDIVPAD
Sbjct:   110 NSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWGEQDAAILVPGDIISIKLGDIVPAD 169

Query:    61 ARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVH 120
             ARLLEGDPL IDQS+LTGESL ++KGPGD VYSGSTCK+GE++AVVIATGVHTF G+A H
Sbjct:   170 ARLLEGDPLKIDQSSLTGESLPVTKGPGDGVYSGSTCKQGELEAVVIATGVHTFFGKAAH 229

Query:   121 LVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGV 180
             LVDTTNHVGHFQ++LTA+G +CICSIA+G+I+EI+VMY +QHR YR G+DNLLV LIGG+
Sbjct:   230 LVDTTNHVGHFQQVLTAIGNFCICSIAVGMIIEIVVMYPIQHRAYRPGIDNLLVLLIGGI 289

Query:   181 PIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240
             PIA+PTVLSV MAIGS +LS QG ITKRMTAI  MAGMDVLC DKTGTLTLNKLTVDKNL
Sbjct:   290 PIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNL 349

Query:   241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKK 282
             IE+F KGVD DTVVLMAA+AS+LEN D IDAA+VGMLADPK+
Sbjct:   350 IEVFTKGVDADTVVLMAAQASRLENQDAIDAAIVGMLADPKE 391
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006200 "ATP catabolic process" evidence=IEA
GO:0006754 "ATP biosynthetic process" evidence=IEA
GO:0006812 "cation transport" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0016887 "ATPase activity" evidence=IEA;ISS
GO:0046872 "metal ion binding" evidence=IEA
TAIR|locus:2097895 HA4 "H(+)-ATPase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044450 HA1 "H(+)-ATPase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096549 HA8 "H(+)-ATPase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165600 HA3 "H(+)-ATPase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025727 HA9 "H(+)-ATPase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046623 HA5 "H(+)-ATPase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053343 HA6 "H(+)-ATPase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081932 HA7 "H(+)-ATPase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020372 AHA10 "autoinhibited H(+)-ATPase isoform 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LV11PMA11_ARATH3, ., 6, ., 3, ., 60.79430.81030.2949yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb03g046720.1
hypothetical protein (876 aa)
(Sorghum bicolor)
Predicted Functional Partners:
Sb10g025280.1
hypothetical protein (772 aa)
     •  0.899
Sb10g009880.1
hypothetical protein (763 aa)
     •  0.899
Sb09g021610.1
hypothetical protein (229 aa)
     •  0.899
Sb09g004450.1
hypothetical protein (772 aa)
     •  0.899
Sb09g001530.1
hypothetical protein (215 aa)
     •  0.899
Sb08g020610.1
hypothetical protein (799 aa)
     •  0.899
Sb04g036230.1
hypothetical protein (759 aa)
     •  0.899
Sb04g034340.1
hypothetical protein (289 aa)
     •  0.899
Sb04g005710.1
hypothetical protein (767 aa)
     •  0.899
Sb03g013530.1
hypothetical protein (774 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
TIGR01647 754 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e 1e-128
COG0474 917 COG0474, MgtA, Cation transport ATPase [Inorganic 3e-56
pfam00122222 pfam00122, E1-E2_ATPase, E1-E2 ATPase 2e-49
TIGR01494 543 TIGR01494, ATPase_P-type, ATPase, P-type (transpor 1e-33
TIGR01524 867 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating 2e-32
PRK10517 902 PRK10517, PRK10517, magnesium-transporting ATPase 1e-31
TIGR01116 917 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic 4e-28
TIGR01522 884 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium- 5e-27
TIGR01523 1053 TIGR01523, ATPase-IID_K-Na, potassium and/or sodiu 7e-27
TIGR01525 556 TIGR01525, ATPase-IB_hvy, heavy metal translocatin 1e-25
COG2217 713 COG2217, ZntA, Cation transport ATPase [Inorganic 1e-24
PRK15122 903 PRK15122, PRK15122, magnesium-transporting ATPase; 2e-24
TIGR01517 944 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium- 7e-24
TIGR01106 997 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux 9e-23
TIGR01512 536 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb 1e-22
TIGR01511 572 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-trans 1e-20
TIGR01647 754 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e 3e-17
TIGR01657 1054 TIGR01657, P-ATPase-V, P-type ATPase of unknown pu 4e-15
PRK11033 741 PRK11033, zntA, zinc/cadmium/mercury/lead-transpor 2e-14
COG2216 681 COG2216, KdpB, High-affinity K+ transport system, 3e-13
TIGR01497 675 TIGR01497, kdpB, K+-transporting ATPase, B subunit 4e-12
PRK14010 673 PRK14010, PRK14010, potassium-transporting ATPase 1e-10
PRK10671 834 PRK10671, copA, copper exporting ATPase; Provision 2e-10
PRK01122 679 PRK01122, PRK01122, potassium-transporting ATPase 5e-08
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information 
 Score =  384 bits (988), Expect = e-128
 Identities = 158/316 (50%), Positives = 211/316 (66%), Gaps = 11/316 (3%)

Query: 1   NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
           N+T+ FI+EN AG A  AL   LAPKA+VLRDGKW+E  A+ LVPGDV+ +K+GDIVPAD
Sbjct: 68  NATIGFIEENKAGNAVEALKQSLAPKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPAD 127

Query: 61  ARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVH 120
            RL EGD + +DQ+ALTGESL ++K  GD  YSGST K+GE +AVV ATG++TF G+A  
Sbjct: 128 CRLFEGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAA 187

Query: 121 LVDTTNH-VGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGG 179
           LV +T    GH QKIL+ +G + I  I + +++E++V++  +   +R GL   LV L+GG
Sbjct: 188 LVQSTETGSGHLQKILSKIGLFLIVLIGVLVLIELVVLFFGRGESFREGLQFALVLLVGG 247

Query: 180 VPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKN 239
           +PIA+P VLSV MA+G+ +L+ +  I  R+TAI  +AGMD+LC DKTGTLTLNKL++D+ 
Sbjct: 248 IPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIEELAGMDILCSDKTGTLTLNKLSIDEI 307

Query: 240 LIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPK--------KVFHLFDFSS 291
           L   F  G D D V+L AA AS+ E+ D ID AV+G   D K          F  FD   
Sbjct: 308 L--PFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEARDGYKVLEFVPFDPVD 365

Query: 292 LSGDQLAIAKETGRRL 307
              +      ETG+R 
Sbjct: 366 KRTEATVEDPETGKRF 381

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast. Length = 754
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase Back     alignment and domain information
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type ATPase, fungal-type Back     alignment and domain information
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit Back     alignment and domain information
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
COG2217 713 ZntA Cation transport ATPase [Inorganic ion transp 100.0
KOG0205 942 consensus Plasma membrane H+-transporting ATPase [ 100.0
TIGR01647 755 ATPase-IIIA_H plasma-membrane proton-efflux P-type 100.0
PRK11033 741 zntA zinc/cadmium/mercury/lead-transporting ATPase 100.0
TIGR01511 562 ATPase-IB1_Cu copper-(or silver)-translocating P-t 100.0
KOG0207 951 consensus Cation transport ATPase [Inorganic ion t 100.0
PRK10671 834 copA copper exporting ATPase; Provisional 100.0
TIGR01512 536 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo 100.0
TIGR01525 556 ATPase-IB_hvy heavy metal translocating P-type ATP 100.0
PRK10517 902 magnesium-transporting ATPase MgtA; Provisional 100.0
TIGR01524 867 ATPase-IIIB_Mg magnesium-translocating P-type ATPa 100.0
PRK15122 903 magnesium-transporting ATPase; Provisional 100.0
COG0474 917 MgtA Cation transport ATPase [Inorganic ion transp 100.0
TIGR01522 884 ATPase-IIA2_Ca golgi membrane calcium-translocatin 100.0
PRK01122 679 potassium-transporting ATPase subunit B; Provision 100.0
TIGR01497 675 kdpB K+-transporting ATPase, B subunit. One sequen 100.0
TIGR01517 941 ATPase-IIB_Ca plasma-membrane calcium-translocatin 100.0
PRK14010 673 potassium-transporting ATPase subunit B; Provision 100.0
KOG0202 972 consensus Ca2+ transporting ATPase [Inorganic ion 100.0
TIGR01494 499 ATPase_P-type ATPase, P-type (transporting), HAD s 100.0
TIGR01116 917 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium 100.0
TIGR01106 997 ATPase-IIC_X-K sodium or proton efflux -- potassiu 100.0
TIGR01523 1053 ATPase-IID_K-Na potassium and/or sodium efflux P-t 100.0
TIGR01657 1054 P-ATPase-V P-type ATPase of unknown pump specifici 100.0
KOG0204 1034 consensus Calcium transporting ATPase [Inorganic i 100.0
PF00122230 E1-E2_ATPase: E1-E2 ATPase p-type cation-transport 100.0
TIGR01652 1057 ATPase-Plipid phospholipid-translocating P-type AT 100.0
KOG0208 1140 consensus Cation transport ATPase [Inorganic ion t 100.0
KOG0203 1019 consensus Na+/K+ ATPase, alpha subunit [Inorganic 100.0
PLN03190 1178 aminophospholipid translocase; Provisional 100.0
COG2216 681 KdpB High-affinity K+ transport system, ATPase cha 99.98
KOG0209 1160 consensus P-type ATPase [Inorganic ion transport a 99.97
KOG0210 1051 consensus P-type ATPase [Inorganic ion transport a 99.92
KOG0206 1151 consensus P-type ATPase [General function predicti 99.85
PF00702215 Hydrolase: haloacid dehalogenase-like hydrolase; I 98.34
KOG4383 1354 consensus Uncharacterized conserved protein [Funct 85.24
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-66  Score=522.62  Aligned_cols=300  Identities=27%  Similarity=0.403  Sum_probs=272.6

Q ss_pred             HHHHHH---hHHHHHHHHHhcCCCceEEEe-CCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcC
Q 041932            5 CFIQEN---NAGAASTALMAHLAPKAKVLR-DGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGES   80 (348)
Q Consensus         5 ~~~~~~---~~~~~~~~l~~~~~~~~~v~r-~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs   80 (348)
                      +|+|++   |+++++++|.++.|+++++++ ||++++|++++|++||+|.|+|||+||+||+|++|++ .||||+|||||
T Consensus       188 ~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s-~vDeS~iTGEs  266 (713)
T COG2217         188 RYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSS-SVDESMLTGES  266 (713)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcE-EeecchhhCCC
Confidence            456666   888999999999999998877 5558999999999999999999999999999999999 89999999999


Q ss_pred             cceecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041932           81 LTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYA  159 (348)
Q Consensus        81 ~pv~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  159 (348)
                      .|+.|++||.|++||.|.+|.+.++|+++|.+|++++|.++++++ .+|+++|+++|+++.||++.+++++++++++||+
T Consensus       267 ~PV~k~~Gd~V~aGtiN~~G~l~i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~  346 (713)
T COG2217         267 LPVEKKPGDEVFAGTVNLDGSLTIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPL  346 (713)
T ss_pred             CCEecCCCCEEeeeEEECCccEEEEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 7889999999999999998666666655554434


Q ss_pred             HhhchHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEe
Q 041932          160 VQHREYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKN  239 (348)
Q Consensus       160 ~~~~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~  239 (348)
                      ..+.+|..++.+++++|+++|||||.+++|+++..++.+++|+|+|+|+..++|+++++|+++||||||||+|+|+|+++
T Consensus       347 ~~~~~~~~a~~~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v  426 (713)
T COG2217         347 FGGGDWETALYRALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDV  426 (713)
T ss_pred             hcCCcHHHHHHHHHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEE
Confidence            43468889999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             eeeeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcccccccccccCCCchhhhhhccceeccccc
Q 041932          240 LIEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKVFHLFDFSSLSGDQLAIAKETGRRLGMGTN  312 (348)
Q Consensus       240 ~~~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~~~~~d~~~i~G~g~~~a~~~~~~~~ig~~  312 (348)
                      .  ..+ + +++++|++|+++|+.|+ ||+++||++++++.+ .....+++.++|.|+ .|.++|+++.+|+.
T Consensus       427 ~--~~~-~-~e~~~L~laAalE~~S~-HPiA~AIv~~a~~~~-~~~~~~~~~i~G~Gv-~~~v~g~~v~vG~~  492 (713)
T COG2217         427 V--ALD-G-DEDELLALAAALEQHSE-HPLAKAIVKAAAERG-LPDVEDFEEIPGRGV-EAEVDGERVLVGNA  492 (713)
T ss_pred             e--cCC-C-CHHHHHHHHHHHHhcCC-ChHHHHHHHHHHhcC-CCCccceeeeccCcE-EEEECCEEEEEcCH
Confidence            5  444 4 88999999999999986 799999999887665 233446899999999 89999999999999

>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase Back     alignment and domain information
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10671 copA copper exporting ATPase; Provisional Back     alignment and domain information
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase Back     alignment and domain information
>PRK10517 magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase Back     alignment and domain information
>PRK15122 magnesium-transporting ATPase; Provisional Back     alignment and domain information
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>PRK01122 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>TIGR01497 kdpB K+-transporting ATPase, B subunit Back     alignment and domain information
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>PRK14010 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type Back     alignment and domain information
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase Back     alignment and domain information
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03190 aminophospholipid translocase; Provisional Back     alignment and domain information
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0206 consensus P-type ATPase [General function prediction only] Back     alignment and domain information
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase) Back     alignment and domain information
>KOG4383 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
3b8c_A 885 Crystal Structure Of A Plasma Membrane Proton Pump 1e-119
3b8c_A 885 Crystal Structure Of A Plasma Membrane Proton Pump 3e-21
1mhs_A 920 Model Of Neurospora Crassa Proton Atpase Length = 9 8e-45
1mhs_A 920 Model Of Neurospora Crassa Proton Atpase Length = 9 4e-06
3b8e_A 998 Crystal Structure Of The Sodium-Potassium Pump Leng 2e-19
3ixz_A 1034 Pig Gastric H+K+-Atpase Complexed With Aluminium Fl 1e-18
3n23_A 992 Crystal Structure Of The High Affinity Complex Betw 2e-18
2dqs_A 995 Crystal Structure Of The Calcium Pump With Amppcp I 3e-17
1kju_A 994 Ca2+-Atpase In The E2 State Length = 994 3e-17
3tlm_A 992 Crystal Structure Of Endoplasmic Reticulum Ca2+-Atp 7e-17
2zxe_A 1028 Crystal Structure Of The Sodium - Potassium Pump In 7e-17
3ba6_A 994 Structure Of The Ca2e1p Phosphoenzyme Intermediate 2e-16
3j09_A 723 High Resolution Helical Reconstruction Of The Bacte 1e-13
3j08_A 645 High Resolution Helical Reconstruction Of The Bacte 1e-13
3rfu_A 736 Crystal Structure Of A Copper-Transporting Pib-Type 3e-10
2kij_A124 Solution Structure Of The Actuator Domain Of The Co 4e-07
2hc8_A113 Structure Of The A. Fulgidus Copa A-Domain Length = 1e-05
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump Length = 885 Back     alignment and structure 
Iteration: 1

 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/282 (74%), Positives = 249/282 (88%)
Query: 1   NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
           NST+ FI+ENNAG A+ ALMA LAPK KVLRDGKW E++AAILVPGD++S+KLGDI+PAD
Sbjct: 106 NSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPAD 165
Query: 61  ARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVH 120
           ARLLEGDPL +DQSALTGESL ++K PG  V+SGSTCK+GEI+AVVIATGVHTF G+A H
Sbjct: 166 ARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAH 225
Query: 121 LVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGV 180
           LVD+TN VGHFQK+LTA+G +CICSIA+G+++EIIVMY +Q R+YR G+DNLLV LIGG+
Sbjct: 226 LVDSTNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGI 285
Query: 181 PIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240
           PIA+PTVLSV MAIGS +LS QG ITKRMTAI  MAGMDVLC DKTGTLTLNKL+VDKNL
Sbjct: 286 PIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNL 345
Query: 241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKK 282
           +E+F KGV+ D V+L AA AS++EN D IDAA+VGMLADPK+
Sbjct: 346 VEVFCKGVEKDQVLLFAAMASRVENQDAIDAAMVGMLADPKE 387
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump Length = 885 Back     alignment and structure
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase Length = 920 Back     alignment and structure
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase Length = 920 Back     alignment and structure
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998 Back     alignment and structure
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034 Back     alignment and structure
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992 Back     alignment and structure
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The Absence Of Calcium Length = 995 Back     alignment and structure
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State Length = 994 Back     alignment and structure
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase (Serca) From Bovine Muscle Length = 992 Back     alignment and structure
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028 Back     alignment and structure
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The Serca Ca2+-Atpase Length = 994 Back     alignment and structure
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 723 Back     alignment and structure
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 645 Back     alignment and structure
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase Length = 736 Back     alignment and structure
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper- Transporting Atpase Atp7a Length = 124 Back     alignment and structure
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain Length = 113 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 1e-122
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 2e-14
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 1e-113
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 2e-13
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 3e-46
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 3e-46
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 3e-42
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 1e-18
3j08_A 645 COPA, copper-exporting P-type ATPase A; copper tra 1e-17
2hc8_A113 PACS, cation-transporting ATPase, P-type; copper, 2e-17
2kij_A124 Copper-transporting ATPase 1; actuator, menkes dis 4e-15
3rfu_A 736 Copper efflux ATPase; alpha helical, CPC, CXXC, AT 8e-15
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Back     alignment and structure
 Score =  370 bits (953), Expect = e-122
 Identities = 212/299 (70%), Positives = 252/299 (84%), Gaps = 8/299 (2%)

Query: 1   NSTVCFIQENNAGAASTALMAHLAPKAKVLRDGKWKEEDAAILVPGDVISVKLGDIVPAD 60
           NST+ FI+ENNAG A+ ALMA LAPK KVLRDGKW E++AAILVPGD++S+KLGDI+PAD
Sbjct: 106 NSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPAD 165

Query: 61  ARLLEGDPLTIDQSALTGESLTISKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVH 120
           ARLLEGDPL +DQSALTGESL ++K PG  V+SGSTCK+GEI+AVVIATGVHTF G+A H
Sbjct: 166 ARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAH 225

Query: 121 LVDTTNHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQHREYRTGLDNLLVPLIGGV 180
           LVD+TN VGHFQK+LTA+G +CICSIA+G+++EIIVMY +Q R+YR G+DNLLV LIGG+
Sbjct: 226 LVDSTNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGI 285

Query: 181 PIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNL 240
           PIA+PTVLSV MAIGS +LS QG ITKRMTAI  MAGMDVLC DKTGTLTLNKL+VDKNL
Sbjct: 286 PIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNL 345

Query: 241 IEIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKV--------FHLFDFSS 291
           +E+F KGV+ D V+L AA AS++EN D IDAA+VGMLADPK+         F  F+   
Sbjct: 346 VEVFCKGVEKDQVLLFAAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVD 404
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Back     alignment and structure
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Back     alignment and structure
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034 Back     alignment and structure
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995 Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723 Back     alignment and structure
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 645 Back     alignment and structure
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Length = 113 Back     alignment and structure
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Length = 124 Back     alignment and structure
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Length = 736 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
3rfu_A 736 Copper efflux ATPase; alpha helical, CPC, CXXC, AT 100.0
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 100.0
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 100.0
3j08_A 645 COPA, copper-exporting P-type ATPase A; copper tra 100.0
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 100.0
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 100.0
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 100.0
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 100.0
2hc8_A113 PACS, cation-transporting ATPase, P-type; copper, 99.97
2kij_A124 Copper-transporting ATPase 1; actuator, menkes dis 99.97
2yj3_A 263 Copper-transporting ATPase; hydrolase, P-type ATPa 99.47
3a1c_A 287 Probable copper-exporting P-type ATPase A; ATP-bin 99.36
2kmv_A185 Copper-transporting ATPase 1; menkes, nucleotide b 99.33
1svj_A156 Potassium-transporting ATPase B chain; alpha-beta 99.18
2arf_A165 Wilson disease ATPase; P-type ATPase,ATP7B, copper 99.09
3skx_A 280 Copper-exporting P-type ATPase B; P1B-ATPase, ATP 98.89
4fe3_A 297 Cytosolic 5'-nucleotidase 3; substrate complex, HA 95.55
2jmz_A186 Hypothetical protein MJ0781; unknown function; NMR 82.08
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Back     alignment and structure
Probab=100.00  E-value=1.3e-61  Score=499.38  Aligned_cols=316  Identities=22%  Similarity=0.308  Sum_probs=276.8

Q ss_pred             HHHHHHhHHHHHHHHHhcCCCceEEEe-CCeEEEEECCCCCCCcEEEEcCCCEEeeeEEEEecCccEEecccccCcCcce
Q 041932            5 CFIQENNAGAASTALMAHLAPKAKVLR-DGKWKEEDAAILVPGDVISVKLGDIVPADARLLEGDPLTIDQSALTGESLTI   83 (348)
Q Consensus         5 ~~~~~~~~~~~~~~l~~~~~~~~~v~r-~g~~~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~~l~vdes~lTGEs~pv   83 (348)
                      +.++++|+.+++++|.++.|++++++| ||++++|++++|+|||+|.|++||+|||||+|++|++ .||||+|||||.|+
T Consensus       205 e~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VDES~LTGES~Pv  283 (736)
T 3rfu_A          205 ELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIPV  283 (736)
T ss_dssp             HHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECSSCE-EEECSSSTTCSSCE
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhCCCCCEEEECCCCcccccEEEEECce-EeeecccCCccccE
Confidence            344444677899999999999999988 9999999999999999999999999999999999999 89999999999999


Q ss_pred             ecCCCCeeeeeeeEecceEEEEEEEecchhHHHHHHhccccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041932           84 SKGPGDCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLVDTT-NHVGHFQKILTAVGKYCICSIALGLILEIIVMYAVQH  162 (348)
Q Consensus        84 ~k~~g~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  162 (348)
                      .|++|+.+|+||.+.+|.++++|+++|.+|.++|+.++++++ .+++++|+.+|+++.++++.+++++++++++|+++..
T Consensus       284 ~K~~gd~v~~Gt~~~~G~~~~~v~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~~~  363 (736)
T 3rfu_A          284 AKEASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLGP  363 (736)
T ss_dssp             EECTTCEECTTCEEESCCCCEEECCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             EeccCCcCCCceEeccceEEEEEEEechhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999887 6789999999999999887666555554444333322


Q ss_pred             -chHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHhCCceeechhHhhhhcCccEEEecccCccccCceEEEEeee
Q 041932          163 -REYRTGLDNLLVPLIGGVPIALPTVLSVIMAIGSQQLSLQGVITKRMTAIVHMAGMDVLCCDKTGTLTLNKLTVDKNLI  241 (348)
Q Consensus       163 -~~~~~~l~~~~~~li~~~P~al~~~~~~~~~~~~~~l~k~gilvk~~~~le~l~~vd~i~fDKTGTLT~~~~~v~~~~~  241 (348)
                       ..|..++.+++++++++|||+|++++|+++..++.+++++|+++|+++++|+++++|++|||||||||+|+|+|.++. 
T Consensus       364 ~~~~~~~l~~ai~vlviacPcaL~la~p~a~~~~~~~~a~~gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~v~~i~-  442 (736)
T 3rfu_A          364 QPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIV-  442 (736)
T ss_dssp             SSSTTHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHHHHHTTEEESCHHHHHHHTSCCEEEECCBTTTBCSSCEEEEEE-
T ss_pred             CchHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHhhcceeechHHHHHHhcCCCEEEEeCCCCCcCCceEEEEEE-
Confidence             237788999999999999999999999999999999999999999999999999999999999999999999999975 


Q ss_pred             eeccCCCCHHHHHHHHHHHcCCCCCChHHHHHHhhhcCCCcc-cccccccccCCCchhhhhhccceecccccccCccccc
Q 041932          242 EIFAKGVDVDTVVLMAARASQLENLDVIDAAVVGMLADPKKV-FHLFDFSSLSGDQLAIAKETGRRLGMGTNMYPSSALL  320 (348)
Q Consensus       242 ~~~~~~~~~~~~l~~aa~~~~~~~~~pia~Ai~~~~~~~~~~-~~~~d~~~i~G~g~~~a~~~~~~~~ig~~~~~~~~~~  320 (348)
                        . .+.++++++.++++.++.++ ||+++||++++++.+.. .+..+++..+|+|+ .+..+|+++.+|+.        
T Consensus       443 --~-~~~~~~~~l~~aa~le~~s~-hPla~Aiv~~a~~~~~~~~~~~~f~~~~g~gv-~~~~~g~~~~~G~~--------  509 (736)
T 3rfu_A          443 --T-DDFVEDNALALAAALEHQSE-HPLANAIVHAAKEKGLSLGSVEAFEAPTGKGV-VGQVDGHHVAIGNA--------  509 (736)
T ss_dssp             --E-SSSCHHHHHHHHHHHHHSSC-CHHHHHHHHHHHTTCCCCCCCSCCCCCTTTEE-EECSSSSCEEEESH--------
T ss_pred             --e-cCCCHHHHHHHHHHHhhcCC-ChHHHHHHHHHHhcCCCccCcccccccCCceE-EEEECCEEEEEcCH--------
Confidence              2 37889999999999999876 79999999998776554 34568889999998 89999999999987        


Q ss_pred             CCCCCCcccCCcHHHHHH
Q 041932          321 GQDRDDSIVALPVDELIE  338 (348)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~  338 (348)
                         ++|++.+.+..+..+
T Consensus       510 ---~~~~~~~~~~~~~~~  524 (736)
T 3rfu_A          510 ---RLMQEHGGDNAPLFE  524 (736)
T ss_dssp             ---HHHHHHCCCCHHHHH
T ss_pred             ---HHHHHcCCChhHHHH
Confidence               445555555444433
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Back     alignment and structure
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Back     alignment and structure
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A Back     alignment and structure
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Back     alignment and structure
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Back     alignment and structure
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Back     alignment and structure
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A* Back     alignment and structure
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I Back     alignment and structure
>2kmv_A Copper-transporting ATPase 1; menkes, nucleotide binding protein, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} PDB: 2kmx_A* Back     alignment and structure
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A* Back     alignment and structure
>2arf_A Wilson disease ATPase; P-type ATPase,ATP7B, copper transport, nucleotide binding, ATP binding, hydrolase; NMR {Homo sapiens} PDB: 2koy_A Back     alignment and structure
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* Back     alignment and structure
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A Back     alignment and structure
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 348
d1wpga1115 b.82.7.1 (A:125-239) Calcium ATPase, transduction 2e-17
d1wpga4 472 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP 3e-04
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 115 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 75.1 bits (184), Expect = 2e-17
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 17/113 (15%)

Query: 27  AKVLRDGKWKEE--DAAILVPGDVISVKLGDIVPADARLLEGDP--LTIDQSALTGESLT 82
            KV R  +   +   A  +VPGD++ V +GD VPAD R+L      L +DQS LTGES++
Sbjct: 3   GKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVS 62

Query: 83  ISKGPG-------------DCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLV 122
           + K                + ++SG+    G+   +V  TGV T +G+    +
Sbjct: 63  VIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 115
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1wpga1115 Calcium ATPase, transduction domain A {Rabbit (Ory 99.94
d1wpga4 472 Calcium ATPase, transmembrane domain M {Rabbit (Or 99.06
d2b8ea2113 Cation-transporting ATPase {Archaeon Archaeoglobus 98.9
d2a29a1136 Potassium-transporting ATPase B chain, KdpB {Esche 98.1
d1wpga2168 Calcium ATPase, catalytic domain P {Rabbit (Orycto 95.27
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.94  E-value=2.3e-27  Score=186.83  Aligned_cols=97  Identities=37%  Similarity=0.576  Sum_probs=88.2

Q ss_pred             ceEEEeCCeE--EEEECCCCCCCcEEEEcCCCEEeeeEEEEecC--ccEEecccccCcCcceecCC-------------C
Q 041932           26 KAKVLRDGKW--KEEDAAILVPGDVISVKLGDIVPADARLLEGD--PLTIDQSALTGESLTISKGP-------------G   88 (348)
Q Consensus        26 ~~~v~r~g~~--~~i~~~~l~~GDii~v~~Ge~iPaDg~vl~g~--~l~vdes~lTGEs~pv~k~~-------------g   88 (348)
                      +++|+|+|++  ++|++++|+|||+|.|++||+|||||+|++++  ++.||||+|||||.|+.|.+             .
T Consensus         2 ~~kV~R~g~~~v~~I~~~eLv~GDiv~l~~G~~vPaD~~ll~~~~~~l~vdes~lTGEs~pv~K~~~~~~~~~~~~~~~~   81 (115)
T d1wpga1           2 MGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKK   81 (115)
T ss_dssp             EEEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCCEEECHHHHSCCSCEECCCSCCCCTTCCGGGCT
T ss_pred             ceEEEECCCceEEEEeHHHCCCCCEEEECCCCEEeeceEEEEeeccceEEEEeecccceEEEEeeccccccccccccccc
Confidence            5789999975  78999999999999999999999999998644  46899999999999999975             3


Q ss_pred             CeeeeeeeEecceEEEEEEEecchhHHHHHHhcc
Q 041932           89 DCVYSGSTCKRGEIQAVVIATGVHTFLGRAVHLV  122 (348)
Q Consensus        89 ~~v~aGt~~~~g~~~~~V~~~G~~t~~~~i~~~~  122 (348)
                      +++|+||.+.+|+++++|++||.+|.+|+|.+++
T Consensus        82 n~lf~GT~V~~G~~~~~V~~tG~~T~~G~i~~~i  115 (115)
T d1wpga1          82 NMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM  115 (115)
T ss_dssp             TEECTTCEEEECEEEEEEEECGGGSHHHHHHHHH
T ss_pred             ceEEeccEEEeeeEEEEEEEEccccHHHHHHHhC
Confidence            5799999999999999999999999999998753
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2b8ea2 d.220.1.1 (A:435-547) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2a29a1 d.220.1.1 (A:316-451) Potassium-transporting ATPase B chain, KdpB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure