Citrus Sinensis ID: 041951
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 726 | 2.2.26 [Sep-21-2011] | |||||||
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.943 | 0.937 | 0.489 | 0.0 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.953 | 0.923 | 0.424 | 1e-149 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.935 | 0.896 | 0.391 | 1e-133 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.947 | 0.887 | 0.362 | 1e-113 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.626 | 0.564 | 0.267 | 6e-26 | |
| O31788 | 442 | Serine protease AprX OS=B | no | no | 0.154 | 0.253 | 0.375 | 1e-08 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.473 | 0.290 | 0.269 | 4e-07 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.473 | 0.294 | 0.269 | 6e-07 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.473 | 0.294 | 0.269 | 6e-07 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.674 | 0.257 | 0.225 | 6e-07 |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/734 (48%), Positives = 475/734 (64%), Gaps = 49/734 (6%)
Query: 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQK 61
+YIVYMG E H+ +L++VV + ++ +Y+RSFNGFA KLT +E +K
Sbjct: 32 NIYIVYMGRKLEDPDSAHLHHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEEAEK 91
Query: 62 LASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFS 121
+ASME VVSVF + +LHTTRSWDF+G L++ R+ VESN++VGV+DTGIWPES SF
Sbjct: 92 IASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFD 151
Query: 122 DEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY------TPAPYDTARDEEGHGSHTAST 175
DEGF P P KWKG C NF CN KIIGAR Y +P + RD GHG+HTAST
Sbjct: 152 DEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTAST 211
Query: 176 ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVIT 235
A+G V A+ YG+G GTARGGVP RIAAYKVC+ GC +L A+DDAIADGVD+I+
Sbjct: 212 AAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIIS 271
Query: 236 ISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL--TASVAPWLMSVAASTTD 293
+S+GG + + DAI+IG+FHA+ +G+LT NSAGN GP TAS++PWL+SVAAST D
Sbjct: 272 LSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 331
Query: 294 RLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELS-SQECNPGCVNGSL 352
R FV +V +GNG++ G SIN+F + +PLV G++I + + S S+ C VN +L
Sbjct: 332 RKFVTQVQIGNGQSFQGVSINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNL 389
Query: 353 VKGKIVICQSFKNYPEVRKA--GAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYK 410
+KGKIV+C++ E K+ GAAG ++ +N D +V D L++L
Sbjct: 390 LKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATL---- 445
Query: 411 ESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRG 470
+YI+ I R+P A I K+ + + APVVV FSSRG
Sbjct: 446 ---RYIYSI-----------------------RSPGATIFKSTTILNASAPVVVSFSSRG 479
Query: 471 PNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAA 530
PN +++KPDIS PGV+ILAA+ +A +R +NIISGTSMSCPH G+A
Sbjct: 480 PNRATKDVIKPDISGPGVEILAAWPSVAPV---GGIRRNTLFNIISGTSMSCPHITGIAT 536
Query: 531 YVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQD 590
YVK+++P WSP+AIKSA+MTTA MN+ N +AEFAYGSGHVNP+KA+ PGLVY+ + D
Sbjct: 537 YVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESD 596
Query: 591 YIKMLCNIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTV 650
Y+K LC GY+ VR I+GD SAC G + DLNYPS VS ++F F RT+
Sbjct: 597 YVKFLCGQGYNTQAVRRITGDYSACTSG-NTGRVWDLNYPSFGLSVSPSQTFNQYFNRTL 655
Query: 651 TNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLV 710
T+V STYRA + ++I V P+VLSF L ++KSF++TV +G +G +VSASLV
Sbjct: 656 TSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV--RGSIKGFVVSASLV 713
Query: 711 WSDGNHWVRSPIVV 724
WSDG H+VRSPI +
Sbjct: 714 WSDGVHYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 314/739 (42%), Positives = 440/739 (59%), Gaps = 47/739 (6%)
Query: 4 YIVYMGSLPEGEYVTSSQHQNILQEVVVGRS-VEDILVRSYRRSFNGFAAKLTVDERQKL 62
YI+Y+G P+ T H N+L + + + ++ V SY ++FN FAAKL+ E +K+
Sbjct: 38 YIIYLGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKM 97
Query: 63 ASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSD 122
ME+VVSV ++ +LHTT+SWDF+GL L+ R E ++I+GV+DTGI P+SESF D
Sbjct: 98 MEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKAERDVIIGVLDTGITPDSESFLD 157
Query: 123 EGFGPAPKKWKGACNGGKNFT-CNNKIIGARYYTP---APYDTAR---DEEGHGSHTAST 175
G GP P KWKG+C KNFT CNNKIIGA+Y+ P R D +GHG+HT+ST
Sbjct: 158 HGLGPPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPIDIDGHGTHTSST 217
Query: 176 ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP-GGCDSAGVLGAFDDAIADGVDVI 234
+G V +AS YG+ GTARG VPS R+A YKVC+ GC +L F+ AI DGV++I
Sbjct: 218 VAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEII 277
Query: 235 TISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP--GLTASVAPWLMSVAASTT 292
+ISIGG A D+S D+IS+G+FHAM KG+LT+ SAGN GP G + PW+++VAAS
Sbjct: 278 SISIGGPIA-DYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGI 336
Query: 293 DRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQE-LSSQECNPGCVNGS 351
DR F K+ LGNGK+ SG I+ F+ K + +PLV G + +++ + ++ C ++
Sbjct: 337 DRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRK 396
Query: 352 LVKGKIVICQSFKNYPE--VRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISY 409
VKGK+++C+ E ++ G AG +++++++ + + PA +V+ + Y
Sbjct: 397 KVKGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATSVNSSVGDIIYRY 456
Query: 410 KESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSR 469
ST R+ A I KT V AP V FSSR
Sbjct: 457 INST-----------------------------RSASAVIQKTRQVT-IPAPFVASFSSR 486
Query: 470 GPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVA 529
GPN +LKPDI+APG+DILAAF+ + D + K+ I+SGTSM+CPH AGVA
Sbjct: 487 GPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVA 546
Query: 530 AYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQ 589
AYVKSFHPDW+P+AIKSAI+T+A ++ N +AEFAYG G +NP +A +PGLVY+
Sbjct: 547 AYVKSFHPDWTPAAIKSAIITSAKPISRRVNKDAEFAYGGGQINPRRAASPGLVYDMDDI 606
Query: 590 DYIKMLCNIGYDESKVRIISGDGS-ACPKGSDKAPPKDLNYPSMAAQVSSGK-SFVVNFP 647
Y++ LC GY+ + + + G S +C LNYP++ + S K S + F
Sbjct: 607 SYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFR 666
Query: 648 RTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSA 707
R VTNVG +S Y A V + I V P LSF ++K+SF V V K + G IVS
Sbjct: 667 RRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSG 726
Query: 708 SLVWSDGNHWVRSPIVVHA 726
LVW H VRSPIV+++
Sbjct: 727 LLVWKSPRHSVRSPIVIYS 745
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 300/767 (39%), Positives = 424/767 (55%), Gaps = 88/767 (11%)
Query: 3 VYIVYMG--SLPEGEYVTSSQHQNILQEVVVGRSVEDI--LVRSYRRSFNGFAAKLTVDE 58
YIV+M +P + S+ + + L RS+ D L+ +Y + +GF+ +LT +E
Sbjct: 31 TYIVHMAKSQMPSSFDLHSNWYDSSL------RSISDSAELLYTYENAIHGFSTRLTQEE 84
Query: 59 RQKLASMEKVVSVFPSRTLQLHTTRSWDFMGLN---LSITRKRSVESNLIVGVIDTGIWP 115
L + V+SV P +LHTTR+ F+GL+ + + S+++VGV+DTG+WP
Sbjct: 85 ADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDTGVWP 144
Query: 116 ESESFSDEGFGPAPKKWKGACNGGKNFT---CNNKIIGARYY------TPAPYD------ 160
ES+S+SDEGFGP P WKG C G NFT CN K+IGAR++ T P D
Sbjct: 145 ESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESR 204
Query: 161 TARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVL 220
+ RD++GHG+HT+STA+G+ V+ AS G GTARG P R+A YKVC+ GGC S+ +L
Sbjct: 205 SPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDIL 264
Query: 221 GAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--A 278
A D AIAD V+V+++S+GG + D+ D ++IGAF AM +G+L SAGN+GP + +
Sbjct: 265 AAIDKAIADNVNVLSMSLGGGMS-DYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLS 323
Query: 279 SVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSI-NSFAMKGRRFPLVYGKEISESCQE 337
+VAPW+ +V A T DR F LGNGK +G S+ A+ + P +Y S +
Sbjct: 324 NVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATN- 382
Query: 338 LSSQECNPGCVNGSLVKGKIVICQSFKNY-----PEVRKAGAAGTVLLNNEFDKVSFVVS 392
C G + VKGKIV+C N V+ AG G +L N + V
Sbjct: 383 --GNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVAD 440
Query: 393 ---LPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEI 449
LPA V + + I+R H++ P A I
Sbjct: 441 AHLLPATTVGEKAGD--------------IIR-----HYVTTDP----------NPTASI 471
Query: 450 -LKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKR 508
+ V +PVV FSSRGPN+I P ILKPD+ APGV+ILAA++ A + + D R
Sbjct: 472 SILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSR 531
Query: 509 KPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMN---------SSK 559
+ ++NIISGTSMSCPH +G+AA +KS HP+WSP+AI+SA+MTTA+ ++
Sbjct: 532 RVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATG 591
Query: 560 NTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCNIGYDESKVRIISGDGSACPKGS 619
F +G+GHV+P A NPGL+Y+ +DY+ LC + Y ++R +S C S
Sbjct: 592 KPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDP-S 650
Query: 620 DKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVANSTYRAKVL-QNSKISIKVVPDV 678
DLNYPS A V ++ + RTVT+VG A TY KV + + + I V P V
Sbjct: 651 KSYSVADLNYPSFAVNVDGVGAY--KYTRTVTSVGGAG-TYSVKVTSETTGVKISVEPAV 707
Query: 679 LSFKSLNEKKSFSVTVT-GKGVPQGAIVSASLVWSDGNHWVRSPIVV 724
L+FK NEKKS++VT T P G+ S+ WSDG H V SP+ +
Sbjct: 708 LNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 283/780 (36%), Positives = 394/780 (50%), Gaps = 92/780 (11%)
Query: 2 QVYIVYMGSLPEGEYVTSSQ---HQNILQEVVVGRSVEDI-----LVRSYRRSFNGFAAK 53
Q YIV + E +S+ H + LQE V+G E+ L+ SY + GFAA+
Sbjct: 26 QTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFAAQ 85
Query: 54 LTVDERQKLASMEKVVSVFPSRTLQLHTTRSWDFMGL----NLSITRKRSVESNLIVGVI 109
LT E + L +VV+V P LQ+ TT S+ F+GL N + K I+GV+
Sbjct: 86 LTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIGVL 145
Query: 110 DTGIWPESESFSDEGFGPAPKKWKGACNGGKNFT---CNNKIIGARYY------------ 154
DTG+WPES SF D G P+KWKG C G++F+ CN K+IGAR++
Sbjct: 146 DTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEE 205
Query: 155 ---TPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP 211
P Y +ARD GHG+HTAST G+ V A+ G G G ARG P IA YKVC+
Sbjct: 206 SPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCWF 265
Query: 212 GGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGN 271
GC S+ +L A D AI D VDV+++S+GG + +D I+IG F AM +G+ + +AGN
Sbjct: 266 NGCYSSDILAAIDVAIQDKVDVLSLSLGG-FPIPLYDDTIAIGTFRAMERGISVICAAGN 324
Query: 272 SGP--GLTASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSI---NSFAMKGRRFPLV 326
+GP A+ APW+ ++ A T DR F V L NGK + G S+ GR ++
Sbjct: 325 NGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPGKGIKNAGREVEVI 384
Query: 327 YGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKN-----YPEVRKAGAAGTVLLN 381
Y + + S+ C G + ++GK+VIC N V++AG +L N
Sbjct: 385 Y-----VTGGDKGSEFCLRGSLPREEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILAN 439
Query: 382 NEFDKVSFVVS---LPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSL 438
E ++ + LPA +LI Y ES Y+ + I F +
Sbjct: 440 TEINQEEDSIDVHLLPA---------TLIGYTESVLLKAYVNATVKPKARIIFGGTV--- 487
Query: 439 YLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLA 498
+ AP V FS+RGP+ P ILKPD+ APGV+I+AA+
Sbjct: 488 ----------------IGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNL 531
Query: 499 QASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA------ 552
+ D R+ + ++SGTSMSCPH +G+ A ++S +P+WSP+AIKSA+MTTA
Sbjct: 532 GPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQ 591
Query: 553 -WAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCNIGYDESKVRIISGD 611
A+ FA G+GHVNP KAINPGLVY DYI LC +G+ S + I+
Sbjct: 592 GKAIKDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHK 651
Query: 612 GSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVANSTYRAKVLQNSKIS 671
+C K P LNYPS+A GK+ + R VTNVG NS Y V I
Sbjct: 652 NVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEM-ITRRVTNVGSPNSIYSVNVKAPEGIK 710
Query: 672 IKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSA----SLVWSDGNHW---VRSPIVV 724
+ V P L FK +++ S+ V K +G V++ L W + ++ VRSPI V
Sbjct: 711 VIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISV 770
|
Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 162/605 (26%), Positives = 259/605 (42%), Gaps = 150/605 (24%)
Query: 41 RSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTLQLHTTRSWD-------------- 86
R Y + F+GF+ KL +E KL +++ V +V+P+ T + + D
Sbjct: 104 REYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDD 163
Query: 87 ---FMGLN----LSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGG 139
++G N L T K + V +IDTG+ E P KK G G
Sbjct: 164 SAPYIGANDAWDLGYTGK-----GIKVAIIDTGV---------EYNHPDLKKNFGQYK-G 208
Query: 140 KNFTCNNKIIGARYYTP--APYDTARDE-EGHGSHTASTASGNEVKDASFYGVGQGTARG 196
+F N+ Y P P R E HG+H A T + N GT +G
Sbjct: 209 YDFVDND-------YDPKETPTGDPRGEATDHGTHVAGTVAAN------------GTIKG 249
Query: 197 GVPSGRIAAYKVCFPGGCDSA-GVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGA 255
P + AY+V PGG + V+ + A+ DG DV+ +S+G ++++ + A S
Sbjct: 250 VAPDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLG--NSLNNPDWATSTAL 307
Query: 256 FHAMAKGVLTLNSAGNSGPGLTASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINS 315
AM++GV+ + S GNSGP W + ++ + + V L ++ Y++ +
Sbjct: 308 DWAMSEGVVAVTSNGNSGPN------GWTVGSPGTSREAISVGATQL----PLNEYAV-T 356
Query: 316 FAMKGRRFPLVYGKEISESCQELSSQEC--------NPGCVNGSLVKGKIVICQ----SF 363
F + Y KE + + L+++E G + GK+ + + +F
Sbjct: 357 FGSYSSAKVMGYNKE--DDVKALNNKEVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAF 414
Query: 364 KNYPE-VRKAGAAGTVLLNNEFDKVSFVV---SLPAVAVSQDSLSSLISYKES--TKYIF 417
+ + +KAGA G V+ NN ++ V S+P + +S + L+S ++ TK F
Sbjct: 415 VDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVSALKAGETKTTF 474
Query: 418 YILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPE 477
+ L E V D FSSRGP +
Sbjct: 475 KLTVSKAL--------------------------GEQVAD--------FSSRGP-VMDTW 499
Query: 478 ILKPDISAPGVDILAAFSPLAQASIDSEDKRKP-KYNIISGTSMSCPHAAGVAAYVKSFH 536
++KPDISAPGV+I+ ++I + D P Y GTSM+ PH AG A +K
Sbjct: 500 MIKPDISAPGVNIV--------STIPTHDPDHPYGYGSKQGTSMASPHIAGAVAVIKQAK 551
Query: 537 PDWSPSAIKSAIMTTAWAMNSSKNTEAEF----AYGSGH---VNPVKA---INPG-LVYE 585
P WS IK+AIM TA + K+++ E A G+G +N +KA ++PG Y
Sbjct: 552 PKWSVEQIKAAIMNTAVTL---KDSDGEVYPHNAQGAGSARIMNAIKADSLVSPGSYSYG 608
Query: 586 TFKQD 590
TF ++
Sbjct: 609 TFLKE 613
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 459 DAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRK---PKYNII 515
D V FSSRGP E KPDI APGV+I++ SP + ID K +Y +
Sbjct: 325 DDDTVASFSSRGPTVYGKE--KPDILAPGVNIISLRSP--NSYIDKLQKSSRVGSQYFTM 380
Query: 516 SGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIM--TTAWAMNSSKNTEAEFAYGSGHVN 573
SGTSM+ P AG+AA + +PD +P +K + T W E YG+G VN
Sbjct: 381 SGTSMATPICAGIAALILQQNPDLTPDEVKELLKNGTDKW------KDEDPNIYGAGAVN 434
Query: 574 PVKAINPG 581
++ PG
Sbjct: 435 AENSV-PG 441
|
Displays serine protease activity. Seems to have a broad substrate specificity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 188/467 (40%), Gaps = 123/467 (26%)
Query: 161 TARDEEGHGSHTASTASGN---EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDS 216
TA D+E HG+H + SGN E K+ Y + G +P ++ +V G D
Sbjct: 187 TAVDQE-HGTHVSGILSGNAPSETKEP--YRL-----EGAMPEAQLLLMRVEIVNGLADY 238
Query: 217 A-GVLGAFDDAIADGVDVITISIGGDSAVDFSE--DAISIGAFHAMAKGVLTLNSAGNS- 272
A A DA+ G VI +S G ++A+ ++ D +A +KGV + SAGN
Sbjct: 239 ARNYAQAIRDAVNLGAKVINMSFG-NAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDS 297
Query: 273 ----------------GPGLTASVAPWLMSVAASTTDRLFVD----KVALGNGKAISGYS 312
G T + A ++VA+ + D+ + K A K + S
Sbjct: 298 SFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLS 357
Query: 313 INSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSL--VKGKIVICQ----SFKNY 366
N F + + Y N G VKGKI + + FK+
Sbjct: 358 TNRFE-PNKAYDYAY---------------ANRGMKEDDFKDVKGKIALIERGDIDFKDK 401
Query: 367 -PEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSL-SSLISYKESTKYIFYILRKML 424
+KAGA G ++ +N+ DK F + LP V D + ++ IS K+ +L K
Sbjct: 402 IANAKKAGAVGVLIYDNQ-DK-GFPIELPNV----DQMPAAFISRKDG------LLLKEN 449
Query: 425 LFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDIS 484
I F L P A K + FSS G A +KPDI+
Sbjct: 450 PQKTITFNATPKVL------PTASGTK-----------LSRFSSWGLTA--DGNIKPDIA 490
Query: 485 APGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVK----SFHPDWS 540
APG DIL++ + KY +SGTSMS P AG+ ++ + +PD +
Sbjct: 491 APGQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMT 537
Query: 541 PSA----IKSAIMTTAWAMNSSKNTEAEFAY------GSGHVNPVKA 577
PS K +M++A A+ E E AY G+G V+ KA
Sbjct: 538 PSERLDLAKKVLMSSATALYD----EDEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 188/467 (40%), Gaps = 123/467 (26%)
Query: 161 TARDEEGHGSHTASTASGN---EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDS 216
TA D+E HG+H + SGN E K+ Y + G +P ++ +V G D
Sbjct: 189 TAVDQE-HGTHVSGILSGNAPSETKEP--YRL-----EGAMPEAQLLLMRVEIVNGLADY 240
Query: 217 A-GVLGAFDDAIADGVDVITISIGGDSAVDFSE--DAISIGAFHAMAKGVLTLNSAGNS- 272
A A DA+ G VI +S G ++A+ ++ D +A +KGV + SAGN
Sbjct: 241 ARNYAQAIRDAVNLGAKVINMSFG-NAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDS 299
Query: 273 ----------------GPGLTASVAPWLMSVAASTTDRLFVD----KVALGNGKAISGYS 312
G T + A ++VA+ + D+ + K A K + S
Sbjct: 300 SFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLS 359
Query: 313 INSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSL--VKGKIVICQ----SFKNY 366
N F + + Y N G VKGKI + + FK+
Sbjct: 360 TNRFE-PNKAYDYAY---------------ANRGTKEDDFKDVKGKIALIERGDIDFKDK 403
Query: 367 -PEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSL-SSLISYKESTKYIFYILRKML 424
+KAGA G ++ +N+ DK F + LP V D + ++ IS K+ +L K
Sbjct: 404 IANAKKAGAVGVLIYDNQ-DK-GFPIELPNV----DQMPAAFISRKDG------LLLKDN 451
Query: 425 LFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDIS 484
I F L P A K + FSS G A +KPDI+
Sbjct: 452 SKKTITFNATPKVL------PTASGTK-----------LSRFSSWGLTA--DGNIKPDIA 492
Query: 485 APGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVK----SFHPDWS 540
APG DIL++ + KY +SGTSMS P AG+ ++ + +PD +
Sbjct: 493 APGQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMT 539
Query: 541 PSA----IKSAIMTTAWAMNSSKNTEAEFAY------GSGHVNPVKA 577
PS K +M++A A+ E E AY G+G V+ KA
Sbjct: 540 PSERLDLAKKVLMSSATALYD----EDEKAYFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 188/467 (40%), Gaps = 123/467 (26%)
Query: 161 TARDEEGHGSHTASTASGN---EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDS 216
TA D+E HG+H + SGN E K+ Y + G +P ++ +V G D
Sbjct: 189 TAVDQE-HGTHVSGILSGNAPSETKEP--YRL-----EGAMPEAQLLLMRVEIVNGLADY 240
Query: 217 A-GVLGAFDDAIADGVDVITISIGGDSAVDFSE--DAISIGAFHAMAKGVLTLNSAGNS- 272
A A DA+ G VI +S G ++A+ ++ D +A +KGV + SAGN
Sbjct: 241 ARNYAQAIRDAVNLGAKVINMSFG-NAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDS 299
Query: 273 ----------------GPGLTASVAPWLMSVAASTTDRLFVD----KVALGNGKAISGYS 312
G T + A ++VA+ + D+ + K A K + S
Sbjct: 300 SFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLS 359
Query: 313 INSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSL--VKGKIVICQ----SFKNY 366
N F + + Y N G VKGKI + + FK+
Sbjct: 360 TNRFE-PNKAYDYAY---------------ANRGTKEDDFKDVKGKIALIERGDIDFKDK 403
Query: 367 -PEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSL-SSLISYKESTKYIFYILRKML 424
+KAGA G ++ +N+ DK F + LP V D + ++ IS K+ +L K
Sbjct: 404 IANAKKAGAVGVLIYDNQ-DK-GFPIELPNV----DQMPAAFISRKDG------LLLKDN 451
Query: 425 LFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDIS 484
I F L P A K + FSS G A +KPDI+
Sbjct: 452 SKKTITFNATPKVL------PTASGTK-----------LSRFSSWGLTA--DGNIKPDIA 492
Query: 485 APGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVK----SFHPDWS 540
APG DIL++ + KY +SGTSMS P AG+ ++ + +PD +
Sbjct: 493 APGQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMT 539
Query: 541 PSA----IKSAIMTTAWAMNSSKNTEAEFAY------GSGHVNPVKA 577
PS K +M++A A+ E E AY G+G V+ KA
Sbjct: 540 PSERLDLAKKVLMSSATALYD----EDEKAYFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 144/639 (22%), Positives = 235/639 (36%), Gaps = 149/639 (23%)
Query: 5 IVYMGSLPEGE-------YVTSSQHQNILQEVVVGRS-----VEDILVRSYRRSF----N 48
IV M + P E Y ++++ Q +V+ ++ VE + ++ S+ N
Sbjct: 96 IVQMSAAPASENGTLRTDYSSTAEIQQETNKVIAAQASVKAAVEQVTQQTAGESYGYVVN 155
Query: 49 GFAAKLTVDERQKLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGV 108
GF+ K+ V + KL + V +V ++ ++ + + + +V V
Sbjct: 156 GFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQAVWSNYKYKGEGTVVSV 215
Query: 109 IDTGIWPESES--FSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYT-PAPY------ 159
IDTGI P + SD+ K K + FT K RY+T PY
Sbjct: 216 IDTGIDPTHKDMRLSDD------KDVKLTKYDVEKFTDTAK--HGRYFTSKVPYGFNYAD 267
Query: 160 --DTARDE---EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGC 214
DT D+ E HG H A N D V G P ++ A KV
Sbjct: 268 NNDTITDDTVDEQHGMHVAGIIGANGTGDDPTKSV-----VGVAPEAQLLAMKVFTNSDT 322
Query: 215 D----SAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAG 270
SA ++ A +D+ G DV+ +S+G DS ED +A G + SAG
Sbjct: 323 SATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPEIAAVQNANESGTAAVISAG 382
Query: 271 NSGP-------------GL-------TASVAPWLMSVAASTTDRLFVDKVALGNGKAIS- 309
NSG GL T + +VA++ + V + +GK +
Sbjct: 383 NSGTSGSATQGVNKDYYGLQDNEMVGTPGTSRGATTVASAENTDVISQAVTITDGKDLQL 442
Query: 310 -----GYSINSF--AMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS 362
S N F + ++F +V K+ S + ++ + KGKI I +
Sbjct: 443 GPETIQLSSNDFTGSFDQKKFYVV--KDASGDLSKGAAADYTADA------KGKIAIVKR 494
Query: 363 FK-NYPEVRK----AGAAGTVLLNNE-----FDKVSFVVSLPAVAVSQDSLSSLISYKES 412
+ N+ + +K AGAAG +++NN+ + + P +S + L+ +
Sbjct: 495 GELNFADKQKYAQAAGAAGLIIVNNDGTATPLTSIRLTTTFPTFGLSSKTGQKLVDW--V 552
Query: 413 TKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPN 472
T + L + + QK D F+S GP
Sbjct: 553 TAHPDDSLGVKIALTLLPNQKYTEDKMSD------------------------FTSYGP- 587
Query: 473 AIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYV 532
+ KPDI+APG +I + + Y +SGTSM+ P AG A +
Sbjct: 588 -VSNLSFKPDITAPGGNIWST-------------QNNNGYTNMSGTSMASPFIAGSQALL 633
Query: 533 KS--------FHPDWSP-------SAIKSAIMTTAWAMN 556
K F+ D+ +K+ M TA +N
Sbjct: 634 KQALNNKNNPFYADYKQLKGTALTDFLKTVEMNTAQPIN 672
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 726 | ||||||
| 224106379 | 710 | predicted protein [Populus trichocarpa] | 0.951 | 0.973 | 0.607 | 0.0 | |
| 297745991 | 705 | unnamed protein product [Vitis vinifera] | 0.953 | 0.981 | 0.586 | 0.0 | |
| 359478595 | 717 | PREDICTED: cucumisin-like [Vitis vinifer | 0.951 | 0.963 | 0.584 | 0.0 | |
| 225434782 | 737 | PREDICTED: cucumisin-like [Vitis vinifer | 0.951 | 0.937 | 0.582 | 0.0 | |
| 297745988 | 1472 | unnamed protein product [Vitis vinifera] | 0.951 | 0.469 | 0.582 | 0.0 | |
| 359478633 | 740 | PREDICTED: cucumisin [Vitis vinifera] | 0.954 | 0.936 | 0.585 | 0.0 | |
| 255558936 | 2072 | peptidase, putative [Ricinus communis] g | 0.946 | 0.331 | 0.580 | 0.0 | |
| 297746066 | 703 | unnamed protein product [Vitis vinifera] | 0.946 | 0.977 | 0.585 | 0.0 | |
| 297815844 | 739 | hypothetical protein ARALYDRAFT_485057 [ | 0.953 | 0.936 | 0.567 | 0.0 | |
| 5541675 | 739 | subtilisin-like proteinase homolog [Arab | 0.953 | 0.936 | 0.567 | 0.0 |
| >gi|224106379|ref|XP_002314147.1| predicted protein [Populus trichocarpa] gi|222850555|gb|EEE88102.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/726 (60%), Positives = 550/726 (75%), Gaps = 35/726 (4%)
Query: 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQK 61
Q YIVYMGSLPEGEY SS H ++LQEVV S E++LVRSY+RSFNGF+AKLT +E QK
Sbjct: 5 QEYIVYMGSLPEGEYSPSSHHLSLLQEVVKDSSSENVLVRSYKRSFNGFSAKLTSEEAQK 64
Query: 62 LASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFS 121
L S ++VVS+FPS TLQL TTRSWDFMG N++ + KR S++IVGVIDTGIWPESESF+
Sbjct: 65 LVSKKEVVSIFPSTTLQLQTTRSWDFMGFNVTASGKRGTHSDIIVGVIDTGIWPESESFN 124
Query: 122 DEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEV 181
D+GFGP P+KW+GAC GG+NFTCNNKIIGAR+Y+ + +ARD+ GHGSHTASTA+GN V
Sbjct: 125 DDGFGPPPRKWRGACEGGENFTCNNKIIGARHYS---FSSARDDLGHGSHTASTAAGNIV 181
Query: 182 KDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGD 241
K ASFYG+ QGTARGGVPS RI+AYKVC PG C S+ +L AFDDAIADGVD+ITISIGG+
Sbjct: 182 KKASFYGLAQGTARGGVPSARISAYKVCGPGSCQSSDILSAFDDAIADGVDIITISIGGN 241
Query: 242 SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP--GLTASVAPWLMSVAASTTDRLFVDK 299
A +F D I+IG FH+MAKG+LTL SAGN GP G ASVAPW+ +VAAS+TDR +DK
Sbjct: 242 QAQEFDTDVIAIGGFHSMAKGILTLQSAGNDGPVSGSVASVAPWIFTVAASSTDRRIIDK 301
Query: 300 VALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVI 359
V LGNGK + G S+NSF++KG++FPLVYGK S C+ L + C GC++ +LVKGKIV+
Sbjct: 302 VVLGNGKTLVGNSVNSFSLKGKKFPLVYGKGASRECKHLEASLCYSGCLDRTLVKGKIVL 361
Query: 360 CQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYI 419
C E ++AGA G +L + F+ +SF++ LP +++++D L+++ SY STK
Sbjct: 362 CDDVNGRTEAKRAGALGAILPIS-FEDISFILPLPGLSLTEDKLNAVKSYLNSTK----- 415
Query: 420 LRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEIL 479
P A ILK+EA+KD AP V FSSRGPN I+ +IL
Sbjct: 416 ------------------------KPSANILKSEAIKDNAAPEVASFSSRGPNPIISDIL 451
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDW 539
KPD SAPGVDILAAF P+ + D+ DKR KY+++SGTSM+CPHAAGVAA+VK+ HPDW
Sbjct: 452 KPDASAPGVDILAAFPPVLSPTDDTADKRHVKYSVMSGTSMACPHAAGVAAHVKAAHPDW 511
Query: 540 SPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCNIG 599
S SAIKSAIMTTAW MN ++ +E EFA+GSGHVNPV AI+PGLVYET K DYI++ C +G
Sbjct: 512 SASAIKSAIMTTAWPMNVTERSEGEFAFGSGHVNPVTAIHPGLVYETQKSDYIQLFCGLG 571
Query: 600 YDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVANST 659
Y K+R ISGD S+C K + P+DLNYPSMAA+V+ +SF + F RTVTNVG ANST
Sbjct: 572 YTAEKIRQISGDNSSCSKAARNTLPRDLNYPSMAAKVAVEESFTIKFHRTVTNVGNANST 631
Query: 660 YRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSDGNHWVR 719
Y+AK+ S + IKVVP+ LSFKSL EKKSF+VT+ G+ + +I+SASLVWSDG+H VR
Sbjct: 632 YKAKIFSRSSLKIKVVPEALSFKSLKEKKSFAVTIVGRDLTYNSILSASLVWSDGSHSVR 691
Query: 720 SPIVVH 725
SPIVV+
Sbjct: 692 SPIVVY 697
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745991|emb|CBI16047.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/732 (58%), Positives = 540/732 (73%), Gaps = 40/732 (5%)
Query: 1 MQVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
MQVYIVY+GSLP+GE+ SQH NIL++V+ G S D LVRSY+RSFNGFAAKLT ER+
Sbjct: 1 MQVYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKERE 60
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESF 120
KL + + VVS+FPS LQL TTRSWDFMGL+ +I RK +VES++IVGVIDTGIWPES SF
Sbjct: 61 KLCNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSF 120
Query: 121 SDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA--PYDTARDEEGHGSHTASTASG 178
SDEGFGP PKKWKG C+GGKNFTCN K+IGA+ Y P D+ RD +GHGSHTASTA+G
Sbjct: 121 SDEGFGPPPKKWKGVCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRDGHGSHTASTAAG 180
Query: 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISI 238
N++K ASFYGV +G+ARGGVPS RIA YKVCF GC A +L AFDDAI+DGVD+I++S+
Sbjct: 181 NKIKGASFYGVAEGSARGGVPSARIAVYKVCFQSGCADADILAAFDDAISDGVDIISVSL 240
Query: 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL--TASVAPWLMSVAASTTDRLF 296
G SA + +ED+++IG+FHAMAKG+LTLNSAGN GP SVAPW++SVAASTTDR
Sbjct: 241 GKRSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTDRQI 300
Query: 297 VDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGK 356
+ KV LGNG ++G SIN+F + G FPLVYGK+ + +C E +Q C+ C+ SLV+GK
Sbjct: 301 ITKVVLGNGTTLAGSSINTFVLNGTEFPLVYGKDATRTCDEYEAQLCSGDCLERSLVEGK 360
Query: 357 IVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYI 416
I++C+S + +AGA G++ + EFD V +V P ++++
Sbjct: 361 IILCRSITGDRDAHEAGAVGSI--SQEFD-VPSIVPFPISTLNEEEF------------- 404
Query: 417 FYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVP 476
++I + Y+ + P A ILK+E+ KD APVV FSSRGPN I+P
Sbjct: 405 ----------------RMIETYYISTKNPKANILKSESTKDSSAPVVASFSSRGPNTIIP 448
Query: 477 EILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
EILKPDI+APGVDILAA+SP+A + ++EDKR KY I+SGTSMSCPH AG+AAY+K+FH
Sbjct: 449 EILKPDITAPGVDILAAYSPVAPVTDEAEDKRSVKYTILSGTSMSCPHVAGIAAYIKTFH 508
Query: 537 PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLC 596
PDWSPSAI+SA++TTAW MN + + E A+GSGHV+PVKA++PGLVYE K DYI M+C
Sbjct: 509 PDWSPSAIQSALITTAWPMNGTTYDDGELAFGSGHVDPVKAVSPGLVYEALKADYINMMC 568
Query: 597 NIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVA 656
++GYD VR++SGD S+CPK + K PKDLNYPSMA +V KSF V FPRTVTN G A
Sbjct: 569 SMGYDTKTVRLVSGDNSSCPKDT-KGSPKDLNYPSMAVKVEETKSFKVEFPRTVTNFGSA 627
Query: 657 NSTYRAKVLQ-NSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVP--QGAIVSASLVWSD 713
NSTY+A V+ NS I ++V PD+LSFK EKKSF VTV G+G+ + I +ASLVWSD
Sbjct: 628 NSTYKATVINTNSHIKVQVNPDILSFKLEKEKKSFVVTVVGQGLDSIEAPIAAASLVWSD 687
Query: 714 GNHWVRSPIVVH 725
G H VRSPIV +
Sbjct: 688 GTHSVRSPIVAY 699
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478595|ref|XP_002280372.2| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/731 (58%), Positives = 539/731 (73%), Gaps = 40/731 (5%)
Query: 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQK 61
+VYIVY+GSLP+GE+ SQH NIL++V+ G S D LVRSY+RSFNGFAAKLT ER+K
Sbjct: 14 KVYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKEREK 73
Query: 62 LASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFS 121
L + + VVS+FPS LQL TTRSWDFMGL+ +I RK +VES++IVGVIDTGIWPES SFS
Sbjct: 74 LCNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSFS 133
Query: 122 DEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA--PYDTARDEEGHGSHTASTASGN 179
DEGFGP PKKWKG C+GGKNFTCN K+IGA+ Y P D+ RD +GHGSHTASTA+GN
Sbjct: 134 DEGFGPPPKKWKGVCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRDGHGSHTASTAAGN 193
Query: 180 EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIG 239
++K ASFYGV +G+ARGGVPS RIA YKVCF GC A +L AFDDAI+DGVD+I++S+G
Sbjct: 194 KIKGASFYGVAEGSARGGVPSARIAVYKVCFQSGCADADILAAFDDAISDGVDIISVSLG 253
Query: 240 GDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL--TASVAPWLMSVAASTTDRLFV 297
SA + +ED+++IG+FHAMAKG+LTLNSAGN GP SVAPW++SVAASTTDR +
Sbjct: 254 KRSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTDRQII 313
Query: 298 DKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKI 357
KV LGNG ++G SIN+F + G FPLVYGK+ + +C E +Q C+ C+ SLV+GKI
Sbjct: 314 TKVVLGNGTTLAGSSINTFVLNGTEFPLVYGKDATRTCDEYEAQLCSGDCLERSLVEGKI 373
Query: 358 VICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIF 417
++C+S + +AGA G++ + EFD V +V P ++++
Sbjct: 374 ILCRSITGDRDAHEAGAVGSI--SQEFD-VPSIVPFPISTLNEEEF-------------- 416
Query: 418 YILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPE 477
++I + Y+ + P A ILK+E+ KD APVV FSSRGPN I+PE
Sbjct: 417 ---------------RMIETYYISTKNPKANILKSESTKDSSAPVVASFSSRGPNTIIPE 461
Query: 478 ILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHP 537
ILKPDI+APGVDILAA+SP+A + ++EDKR KY I+SGTSMSCPH AG+AAY+K+FHP
Sbjct: 462 ILKPDITAPGVDILAAYSPVAPVTDEAEDKRSVKYTILSGTSMSCPHVAGIAAYIKTFHP 521
Query: 538 DWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCN 597
DWSPSAI+SA++TTAW MN + + E A+GSGHV+PVKA++PGLVYE K DYI M+C+
Sbjct: 522 DWSPSAIQSALITTAWPMNGTTYDDGELAFGSGHVDPVKAVSPGLVYEALKADYINMMCS 581
Query: 598 IGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVAN 657
+GYD VR++SGD S+CPK + K PKDLNYPSMA +V KSF V FPRTVTN G AN
Sbjct: 582 MGYDTKTVRLVSGDNSSCPKDT-KGSPKDLNYPSMAVKVEETKSFKVEFPRTVTNFGSAN 640
Query: 658 STYRAKVLQ-NSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVP--QGAIVSASLVWSDG 714
STY+A V+ NS I ++V PD+LSFK EKKSF VTV G+G+ + I +ASLVWSDG
Sbjct: 641 STYKATVINTNSHIKVQVNPDILSFKLEKEKKSFVVTVVGQGLDSIEAPIAAASLVWSDG 700
Query: 715 NHWVRSPIVVH 725
H VRSPIV +
Sbjct: 701 THSVRSPIVAY 711
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434782|ref|XP_002280283.1| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/730 (58%), Positives = 529/730 (72%), Gaps = 39/730 (5%)
Query: 2 QVYIVYMGSLPEGE-YVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
+VY+VY+G LPE + Y Q +IL V+ S+ VRSYR+SFNGFAA+LT E++
Sbjct: 33 KVYVVYLGHLPENQAYSPMGQQYSILGSVLETSSISQAFVRSYRKSFNGFAARLTDREKE 92
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESF 120
+LA+ME VVS+FPS+TLQ T+RSWDFMG SI R+ VES++I+GV DTGIWPESESF
Sbjct: 93 RLANMEDVVSIFPSKTLQPQTSRSWDFMGFTESIRRRPFVESDVIIGVFDTGIWPESESF 152
Query: 121 SDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP--APYDTARDEEGHGSHTASTASG 178
SD+GFGP P+KW+G C GGKNFTCNNK+IGAR Y AP + RD +GHG+HTASTA+G
Sbjct: 153 SDKGFGPIPRKWRGVCQGGKNFTCNNKLIGARNYNAKKAPDNYVRDIDGHGTHTASTAAG 212
Query: 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISI 238
N V ASF+GV +GTARGGVPS RIAAYKVC P GC+ A ++ AFDDAIADGVD+ITIS+
Sbjct: 213 NPVT-ASFFGVAKGTARGGVPSARIAAYKVCHPSGCEEADIMAAFDDAIADGVDIITISL 271
Query: 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP--GLTASVAPWLMSVAASTTDRLF 296
G AVDF+ D+I+IGAFHAM KG+LT+NSAGN+GP VAPWL+SVAAS+TDR
Sbjct: 272 GLGGAVDFTIDSIAIGAFHAMQKGILTVNSAGNNGPKRATAVGVAPWLLSVAASSTDRRI 331
Query: 297 VDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGK 356
+ KV LG+G ++G +INSF ++G +FPLVYGK+ + C S+Q C C++ LVKGK
Sbjct: 332 ISKVILGDGTRLTGAAINSFQLRGEKFPLVYGKDATSKCDAFSAQRCISKCLDSKLVKGK 391
Query: 357 IVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYI 416
IV+CQ+F E KAGA G +LLN+ VSF+V LPA A+ + L+SY STK
Sbjct: 392 IVVCQAFWGLQEAFKAGAVGAILLNDFQTDVSFIVPLPASALRPKRFNKLLSYINSTK-- 449
Query: 417 FYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVP 476
+P A IL++ + KD APVV FSSRGPN I+P
Sbjct: 450 ---------------------------SPEATILRSVSRKDASAPVVAQFSSRGPNIILP 482
Query: 477 EILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
EILKPDISAPGVDILAAFSPLA S S DKR +YNIISGTSM+CPH AGVAAYVK+FH
Sbjct: 483 EILKPDISAPGVDILAAFSPLASPSEISGDKRAARYNIISGTSMACPHVAGVAAYVKTFH 542
Query: 537 PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLC 596
P+WSPSAI+SA+MTTAW MN+++ + E AYGSGHVNPVKAI+PGL+Y KQDY+ MLC
Sbjct: 543 PNWSPSAIQSALMTTAWRMNATRTPDGELAYGSGHVNPVKAISPGLIYHAHKQDYVNMLC 602
Query: 597 NIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVA 656
+GYD +R+I+G+ S CPK S + KDLNYPSMA +V K F V FPR V NVG A
Sbjct: 603 GMGYDSKNMRLITGENSQCPKNSTFS-AKDLNYPSMAVKVPPNKPFKVEFPRRVKNVGPA 661
Query: 657 NSTYRAKVLQNS-KISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSDGN 715
S Y+A+V S ++ ++V+P+VLSF+SL E+K F V+V GKG+ + SASLVWSDG
Sbjct: 662 PSIYKAEVTTTSPRLKVRVIPNVLSFRSLYEEKHFVVSVVGKGLE--LMESASLVWSDGR 719
Query: 716 HWVRSPIVVH 725
H V+SPIVV+
Sbjct: 720 HLVKSPIVVY 729
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745988|emb|CBI16044.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/731 (58%), Positives = 530/731 (72%), Gaps = 40/731 (5%)
Query: 1 MQVYIVYMGSLPEGE-YVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDER 59
+QVY+VY+G LPE + Y Q +IL V+ S+ VRSYR+SFNGFAA+LT E+
Sbjct: 768 IQVYVVYLGHLPENQAYSPMGQQYSILGSVLETSSISQAFVRSYRKSFNGFAARLTDREK 827
Query: 60 QKLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESES 119
++LA+ME VVS+FPS+TLQ T+RSWDFMG SI R+ VES++I+GV DTGIWPESES
Sbjct: 828 ERLANMEDVVSIFPSKTLQPQTSRSWDFMGFTESIRRRPFVESDVIIGVFDTGIWPESES 887
Query: 120 FSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP--APYDTARDEEGHGSHTASTAS 177
FSD+GFGP P+KW+G C GGKNFTCNNK+IGAR Y AP + RD +GHG+HTASTA+
Sbjct: 888 FSDKGFGPIPRKWRGVCQGGKNFTCNNKLIGARNYNAKKAPDNYVRDIDGHGTHTASTAA 947
Query: 178 GNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITIS 237
GN V ASF+GV +GTARGGVPS RIAAYKVC P GC+ A ++ AFDDAIADGVD+ITIS
Sbjct: 948 GNPVT-ASFFGVAKGTARGGVPSARIAAYKVCHPSGCEEADIMAAFDDAIADGVDIITIS 1006
Query: 238 IGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP--GLTASVAPWLMSVAASTTDRL 295
+G AVDF+ D+I+IGAFHAM KG+LT+NSAGN+GP VAPWL+SVAAS+TDR
Sbjct: 1007 LGLGGAVDFTIDSIAIGAFHAMQKGILTVNSAGNNGPKRATAVGVAPWLLSVAASSTDRR 1066
Query: 296 FVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKG 355
+ KV LG+G ++G +INSF ++G +FPLVYGK+ + C S+Q C C++ LVKG
Sbjct: 1067 IISKVILGDGTRLTGAAINSFQLRGEKFPLVYGKDATSKCDAFSAQ-CISKCLDSKLVKG 1125
Query: 356 KIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKY 415
KIV+CQ+F E KAGA G +LLN+ VSF+V LPA A+ + L+SY STK
Sbjct: 1126 KIVVCQAFWGLQEAFKAGAVGAILLNDFQTDVSFIVPLPASALRPKRFNKLLSYINSTK- 1184
Query: 416 IFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIV 475
+P A IL++ + KD APVV FSSRGPN I+
Sbjct: 1185 ----------------------------SPEATILRSVSRKDASAPVVAQFSSRGPNIIL 1216
Query: 476 PEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSF 535
PEILKPDISAPGVDILAAFSPLA S S DKR +YNIISGTSM+CPH AGVAAYVK+F
Sbjct: 1217 PEILKPDISAPGVDILAAFSPLASPSEISGDKRAARYNIISGTSMACPHVAGVAAYVKTF 1276
Query: 536 HPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKML 595
HP+WSPSAI+SA+MTTAW MN+++ + E AYGSGHVNPVKAI+PGL+Y KQDY+ ML
Sbjct: 1277 HPNWSPSAIQSALMTTAWRMNATRTPDGELAYGSGHVNPVKAISPGLIYHAHKQDYVNML 1336
Query: 596 CNIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGV 655
C +GYD +R+I+G+ S CPK S + KDLNYPSMA +V K F V FPR V NVG
Sbjct: 1337 CGMGYDSKNMRLITGENSQCPKNSTFS-AKDLNYPSMAVKVPPNKPFKVEFPRRVKNVGP 1395
Query: 656 ANSTYRAKVLQNS-KISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSDG 714
A S Y+A+V S ++ ++V+P+VLSF+SL E+K F V+V GKG+ + SASLVWSDG
Sbjct: 1396 APSIYKAEVTTTSPRLKVRVIPNVLSFRSLYEEKHFVVSVVGKGLE--LMESASLVWSDG 1453
Query: 715 NHWVRSPIVVH 725
H V+SPIVV+
Sbjct: 1454 RHLVKSPIVVY 1464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478633|ref|XP_002280951.2| PREDICTED: cucumisin [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/734 (58%), Positives = 531/734 (72%), Gaps = 41/734 (5%)
Query: 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQK 61
+ YIVYMG+LP+ ++ SQH +IL++ + G S ED LVRSY RSFNGFAAKLT ER+K
Sbjct: 32 KTYIVYMGALPQQQFSPLSQHLSILEDALGGSSPEDSLVRSYGRSFNGFAAKLTEQEREK 91
Query: 62 LASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFS 121
LAS E+VVSVFPS LQLHTTRSWDFMG ++ R S+ES++I+GV+DTGIWPES+SFS
Sbjct: 92 LASKEEVVSVFPSGILQLHTTRSWDFMGFPQTVKRVPSIESDIIIGVLDTGIWPESKSFS 151
Query: 122 DEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP--APYDTARDEEGHGSHTASTASGN 179
DEG GP PKKWKG+C GG+NFTCN KIIGAR Y +P +TARD EGHG+HTASTA+G+
Sbjct: 152 DEGLGPVPKKWKGSCKGGQNFTCNKKIIGARVYNSMISPDNTARDSEGHGTHTASTAAGS 211
Query: 180 EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIG 239
VK ASFYGVG+G ARGGVPS RIA YKVC+ GC A V+ AFDDAI+DGVD+IT+S+G
Sbjct: 212 VVKGASFYGVGKGDARGGVPSARIAVYKVCYETGCTVADVMAAFDDAISDGVDIITVSLG 271
Query: 240 GDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPG--LTASVAPWLMSVAASTTDRLFV 297
+A+ D+I IGAFHAMAKG+LTLNSAGN+GP +SVAPW++SVAASTTDR +
Sbjct: 272 AAAALPLDSDSIGIGAFHAMAKGILTLNSAGNNGPVPVSVSSVAPWMVSVAASTTDRRII 331
Query: 298 DKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKI 357
+V LGNG + G +INSF + G P+VYGK S +C + +++ C P C+N L KGKI
Sbjct: 332 GEVVLGNGVTVEGIAINSFELNGTNHPIVYGKTAS-TCDKQNAEICRPSCLNEDLSKGKI 390
Query: 358 VICQSFKN-YPEVRKAGAAGTVLLNNEF-DKVSFVVSLPAVAVSQDSLSSLISYKESTKY 415
V+C++ Y E + GA GT+ L E+ +KV F+V +P +++ + +Y STK
Sbjct: 391 VLCKNNPQIYVEASRVGALGTITLAQEYQEKVPFIVPVPMTTLTRPDFEKVEAYINSTK- 449
Query: 416 IFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIV 475
P A ILK+E++ D APVV FSSRGPN IV
Sbjct: 450 ----------------------------KPKANILKSESLNDTSAPVVAFFSSRGPNRIV 481
Query: 476 PEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSF 535
P+ LKPDI+APGVDILAAFSP+A S ED R+ YN +SGTSMSCPHAA VAAYVKSF
Sbjct: 482 PDFLKPDITAPGVDILAAFSPIAPISDTDEDDRRVNYNFLSGTSMSCPHAAAVAAYVKSF 541
Query: 536 HPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKML 595
HP WSPSAIKSAIMTTA ++ S N + E AYGSGH++PVKA +PGLVY+ K+DYIKM+
Sbjct: 542 HPTWSPSAIKSAIMTTAQRLDPSNNPDGELAYGSGHIDPVKARSPGLVYDASKEDYIKMM 601
Query: 596 CNIGYDESKVRIISGDGS-ACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVG 654
C +GYD ++VR+ISGD S +CPK K P+DLNYPSMAA+V K F V FPRTVTNVG
Sbjct: 602 CTMGYDTNQVRLISGDNSTSCPKDG-KGSPRDLNYPSMAAKVDPKKPFAVKFPRTVTNVG 660
Query: 655 VANSTYRAKV-LQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGV--PQGAIVSASLVW 711
ANSTY+AK+ +++ I ++V P LSFKSLNE KSF VTVTG G+ + SASL W
Sbjct: 661 FANSTYKAKIRIRSRHIKVQVNPSTLSFKSLNETKSFLVTVTGDGLNFEKDPTASASLAW 720
Query: 712 SDGNHWVRSPIVVH 725
SDGNH VRSPI V+
Sbjct: 721 SDGNHHVRSPIFVY 734
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558936|ref|XP_002520491.1| peptidase, putative [Ricinus communis] gi|223540333|gb|EEF41904.1| peptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/722 (58%), Positives = 533/722 (73%), Gaps = 35/722 (4%)
Query: 1 MQVYIVYMGSLPEGEYVTSSQHQNILQEVV-VGRSVEDILVRSYRRSFNGFAAKLTVDER 59
+Q++IVYMGSLP+ EY S H ++LQEV S+E++LV SYRRSFNGFAAKL+ E
Sbjct: 4 LQLHIVYMGSLPKVEYSPLSHHLSLLQEVTESSSSIENLLVTSYRRSFNGFAAKLSDFEA 63
Query: 60 QKLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESES 119
QKLASM++VVSVFPSR L L TTRSW FMGL+ R ESN+IVGV+DTGIWPESES
Sbjct: 64 QKLASMKEVVSVFPSRILDLQTTRSWSFMGLDEGARRNPIAESNVIVGVMDTGIWPESES 123
Query: 120 FSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY--TPAPYDTARDEEGHGSHTASTAS 177
FSD+GF P PK WKG+CNGG NFTCNNKIIGARYY T +ARD+ GHG+HTASTA+
Sbjct: 124 FSDKGFSPPPKNWKGSCNGGLNFTCNNKIIGARYYNSTQLRIISARDDVGHGTHTASTAA 183
Query: 178 GNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITIS 237
GN+V DASF+G+ +GTARGGVPS RI+AY+VC GC A VL AFDDAIADGVD+ITIS
Sbjct: 184 GNKVMDASFFGIARGTARGGVPSARISAYRVCSVEGCSGAEVLAAFDDAIADGVDIITIS 243
Query: 238 IGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP--GLTASVAPWLMSVAASTTDRL 295
+G A+++ ED I+IGAFHAM KG+ SAGN+G G +SVAPW+++VAAS+ DR
Sbjct: 244 VGPSYALNYYEDPIAIGAFHAMEKGIFVSQSAGNNGVQIGSVSSVAPWILTVAASSKDRR 303
Query: 296 FVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKG 355
+DKV LGNGK ++G SINSFA+KG FPL+YG S +C ++ C GC++ SLVKG
Sbjct: 304 IIDKVVLGNGKTLTGTSINSFALKGENFPLIYGIGASATCTPEFARVCQLGCLDASLVKG 363
Query: 356 KIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKY 415
KIV+C + + E+ + GA G++L +N + V+FV S P ++++ D+++++ SY ST
Sbjct: 364 KIVLCDDSRGHFEIERVGAVGSILASNGIEDVAFVASSPFLSLNDDNIAAVKSYINSTS- 422
Query: 416 IFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIV 475
PVA ILK+EA+ D APVV FSSRGPN I
Sbjct: 423 ----------------------------QPVANILKSEAINDSSAPVVASFSSRGPNLIA 454
Query: 476 PEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSF 535
++LKPDISAPG++ILAAF + D R+ K+NI+SGTSMSCPHAAGVAAYVKSF
Sbjct: 455 LDLLKPDISAPGIEILAAFPTNIPPTESLHDNRQVKFNIVSGTSMSCPHAAGVAAYVKSF 514
Query: 536 HPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKML 595
HP+WSPSAIKSAIMTTA MN++ +++AE AYGSGH+NP KAI+PGLVYE +DYIK L
Sbjct: 515 HPEWSPSAIKSAIMTTASPMNATTSSDAELAYGSGHLNPSKAIDPGLVYEASNEDYIKFL 574
Query: 596 CNI-GYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVG 654
C++ GY E VR ISG+ + CP+G++KA P+DLNYPSM A +++ +SF ++F RTVTNVG
Sbjct: 575 CSVSGYTEDMVRRISGENTTCPEGANKALPRDLNYPSMTAAIAANESFTISFYRTVTNVG 634
Query: 655 VANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSDG 714
+ NSTY+AKV SK+ IKVVP+VLSFK++NEKKSF+V+V G+ + + SASLVWSDG
Sbjct: 635 LPNSTYKAKVFTGSKLKIKVVPEVLSFKAINEKKSFNVSVDGRYLVSKEMTSASLVWSDG 694
Query: 715 NH 716
+H
Sbjct: 695 SH 696
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746066|emb|CBI16122.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/728 (58%), Positives = 526/728 (72%), Gaps = 41/728 (5%)
Query: 8 MGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEK 67
MG+LP+ ++ SQH +IL++ + G S ED LVRSY RSFNGFAAKLT ER+KLAS E+
Sbjct: 1 MGALPQQQFSPLSQHLSILEDALGGSSPEDSLVRSYGRSFNGFAAKLTEQEREKLASKEE 60
Query: 68 VVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGP 127
VVSVFPS LQLHTTRSWDFMG ++ R S+ES++I+GV+DTGIWPES+SFSDEG GP
Sbjct: 61 VVSVFPSGILQLHTTRSWDFMGFPQTVKRVPSIESDIIIGVLDTGIWPESKSFSDEGLGP 120
Query: 128 APKKWKGACNGGKNFTCNNKIIGARYYTP--APYDTARDEEGHGSHTASTASGNEVKDAS 185
PKKWKG+C GG+NFTCN KIIGAR Y +P +TARD EGHG+HTASTA+G+ VK AS
Sbjct: 121 VPKKWKGSCKGGQNFTCNKKIIGARVYNSMISPDNTARDSEGHGTHTASTAAGSVVKGAS 180
Query: 186 FYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVD 245
FYGVG+G ARGGVPS RIA YKVC+ GC A V+ AFDDAI+DGVD+IT+S+G +A+
Sbjct: 181 FYGVGKGDARGGVPSARIAVYKVCYETGCTVADVMAAFDDAISDGVDIITVSLGAAAALP 240
Query: 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTA--SVAPWLMSVAASTTDRLFVDKVALG 303
D+I IGAFHAMAKG+LTLNSAGN+GP + SVAPW++SVAASTTDR + +V LG
Sbjct: 241 LDSDSIGIGAFHAMAKGILTLNSAGNNGPVPVSVSSVAPWMVSVAASTTDRRIIGEVVLG 300
Query: 304 NGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSF 363
NG + G +INSF + G P+VYGK S +C + +++ C P C+N L KGKIV+C++
Sbjct: 301 NGVTVEGIAINSFELNGTNHPIVYGKTAS-TCDKQNAEICRPSCLNEDLSKGKIVLCKNN 359
Query: 364 KN-YPEVRKAGAAGTVLLNNEF-DKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILR 421
Y E + GA GT+ L E+ +KV F+V +P +++ + +Y STK
Sbjct: 360 PQIYVEASRVGALGTITLAQEYQEKVPFIVPVPMTTLTRPDFEKVEAYINSTK------- 412
Query: 422 KMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKP 481
P A ILK+E++ D APVV FSSRGPN IVP+ LKP
Sbjct: 413 ----------------------KPKANILKSESLNDTSAPVVAFFSSRGPNRIVPDFLKP 450
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI+APGVDILAAFSP+A S ED R+ YN +SGTSMSCPHAA VAAYVKSFHP WSP
Sbjct: 451 DITAPGVDILAAFSPIAPISDTDEDDRRVNYNFLSGTSMSCPHAAAVAAYVKSFHPTWSP 510
Query: 542 SAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCNIGYD 601
SAIKSAIMTTA ++ S N + E AYGSGH++PVKA +PGLVY+ K+DYIKM+C +GYD
Sbjct: 511 SAIKSAIMTTAQRLDPSNNPDGELAYGSGHIDPVKARSPGLVYDASKEDYIKMMCTMGYD 570
Query: 602 ESKVRIISGDGS-ACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVANSTY 660
++VR+ISGD S +CPK K P+DLNYPSMAA+V K F V FPRTVTNVG ANSTY
Sbjct: 571 TNQVRLISGDNSTSCPKDG-KGSPRDLNYPSMAAKVDPKKPFAVKFPRTVTNVGFANSTY 629
Query: 661 RAKV-LQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGV--PQGAIVSASLVWSDGNHW 717
+AK+ +++ I ++V P LSFKSLNE KSF VTVTG G+ + SASL WSDGNH
Sbjct: 630 KAKIRIRSRHIKVQVNPSTLSFKSLNETKSFLVTVTGDGLNFEKDPTASASLAWSDGNHH 689
Query: 718 VRSPIVVH 725
VRSPI V+
Sbjct: 690 VRSPIFVY 697
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297815844|ref|XP_002875805.1| hypothetical protein ARALYDRAFT_485057 [Arabidopsis lyrata subsp. lyrata] gi|297321643|gb|EFH52064.1| hypothetical protein ARALYDRAFT_485057 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/738 (56%), Positives = 529/738 (71%), Gaps = 46/738 (6%)
Query: 2 QVYIVYMGSLPEG-EYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
QVYIVYMG+LP +Y+ S H +ILQ+V S+ED LVR+Y+RSFNGFAA LT ER+
Sbjct: 33 QVYIVYMGALPARVDYMPMSHHTSILQDVTGESSIEDRLVRNYKRSFNGFAAWLTESERE 92
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRS--VESNLIVGVIDTGIWPESE 118
LASM++VVSVFP++ L+L TT SW+FMGL KR+ +ES+ I+GVID+GI+PES+
Sbjct: 93 ILASMDEVVSVFPNKKLKLQTTTSWNFMGLKEGKRTKRNAIIESDTIIGVIDSGIYPESD 152
Query: 119 SFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPY---DTARDEEGHGSHTAST 175
SFS +GFGP PKKW+G C GGKNFTCNNK+IGARYYTP ++ARD GHGSHTAST
Sbjct: 153 SFSGKGFGPPPKKWRGVCEGGKNFTCNNKLIGARYYTPKLEGFPESARDYMGHGSHTAST 212
Query: 176 ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPG--GCDSAGVLGAFDDAIADGVDV 233
A+GN VK SFYG+G GTARGGVP+ RIA YKVC PG GC + G+L AFDDAIAD VD+
Sbjct: 213 AAGNAVKHVSFYGLGNGTARGGVPAARIAVYKVCDPGVDGCTTDGILAAFDDAIADKVDL 272
Query: 234 ITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP--GLTASVAPWLMSVAAST 291
ITISIGGD F D I+IGAFHAMAKG+L +NSAGN+GP AS+APW+ +VAAS
Sbjct: 273 ITISIGGDKGSPFEVDPIAIGAFHAMAKGILIVNSAGNNGPEPSTVASIAPWIFTVAASN 332
Query: 292 TDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGS 351
T+R FV KVALGNGK + G S+NSF + G+++PLVYG+ S SC S+ C+PGC++
Sbjct: 333 TNRAFVTKVALGNGKTVVGRSVNSFNLNGKKYPLVYGESASSSCDAASAGFCSPGCLDSK 392
Query: 352 LVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKE 411
VKGKIV+C S +N E + GA ++ + D V+ + S P +S+D ++++SY
Sbjct: 393 RVKGKIVLCDSPQNPDEAQAMGAVASIARSRRAD-VASIFSFPVSILSEDDYNTVLSYMN 451
Query: 412 STKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGP 471
STK P A +LK+E + + APVV +SSRGP
Sbjct: 452 STK-----------------------------NPKAAVLKSETIFNQRAPVVASYSSRGP 482
Query: 472 NAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAY 531
N I+P+ILKPD++APG +ILAA+SP A S D R+ KY++ +GTSMSCPH AGVAAY
Sbjct: 483 NTIIPDILKPDVTAPGSEILAAYSPDAPPS--KSDTRRVKYSVETGTSMSCPHVAGVAAY 540
Query: 532 VKSFHPDWSPSAIKSAIMTTAWAMNSSK---NTEAEFAYGSGHVNPVKAINPGLVYETFK 588
+KSFHP WSPS I+SAIMTTAW MN+S N AEFAYG+GHV+P+ AI+PGLVYE K
Sbjct: 541 LKSFHPRWSPSMIQSAIMTTAWPMNASTSPFNELAEFAYGAGHVDPITAIHPGLVYEANK 600
Query: 589 QDYIKMLCNIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPR 648
D+I LC + Y+ +R+ISGD S+C K K+ P++LNYPSM AQVS+ K F V F R
Sbjct: 601 SDHIAFLCGLNYNGKNLRLISGDNSSCTKEQTKSLPRNLNYPSMTAQVSAAKPFKVTFRR 660
Query: 649 TVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSAS 708
TVTNVG N+TY+AKV+ SK+ +KV+PDVLS KSL EKKSF+VTV+G G +VSA
Sbjct: 661 TVTNVGRPNATYKAKVV-GSKLKVKVIPDVLSLKSLYEKKSFTVTVSGAGPKAEKLVSAQ 719
Query: 709 LVWSDGNHWVRSPIVVHA 726
L+WSDG H+VRSPIVV+A
Sbjct: 720 LIWSDGVHFVRSPIVVYA 737
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5541675|emb|CAB51181.1| subtilisin-like proteinase homolog [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/738 (56%), Positives = 529/738 (71%), Gaps = 46/738 (6%)
Query: 2 QVYIVYMGSLPEG-EYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
Q YIVYMG+LP +Y+ S H +ILQ+V S+ED LVR+Y+RSFNGFAA+LT ER+
Sbjct: 33 QEYIVYMGALPARVDYMPMSHHTSILQDVTGESSIEDRLVRNYKRSFNGFAARLTKSERE 92
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRS--VESNLIVGVIDTGIWPESE 118
LASM++VVSVFP++ L+L TT SW+FMGL S KR+ +ES+ I+GVID+GI+PES+
Sbjct: 93 ILASMDEVVSVFPNKKLKLQTTTSWNFMGLKESKRTKRNTIIESDTIIGVIDSGIYPESD 152
Query: 119 SFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPY---DTARDEEGHGSHTAST 175
SFS +GFGP PKKWKG C GGKNFT NNK+IGARYYTP ++ARD GHGSHTAST
Sbjct: 153 SFSGKGFGPPPKKWKGVCKGGKNFTWNNKLIGARYYTPKLEGFPESARDYMGHGSHTAST 212
Query: 176 ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPG--GCDSAGVLGAFDDAIADGVDV 233
A+GN VK SFYG+G GTARGGVP+ RIA YKVC PG GC + G+L AFDDAIAD VD+
Sbjct: 213 AAGNAVKHVSFYGLGNGTARGGVPAARIAVYKVCDPGVDGCTTDGILAAFDDAIADKVDI 272
Query: 234 ITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP--GLTASVAPWLMSVAAST 291
ITISIGGD++ F ED I+IGAFHAMAKG+L +NSAGNSGP AS+APW+ +VAAS
Sbjct: 273 ITISIGGDNSSPFEEDPIAIGAFHAMAKGILIVNSAGNSGPEPSTVASIAPWMFTVAASN 332
Query: 292 TDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGS 351
T+R FV KV LGNGK + G S+NSF + G+++PLVYGK S SC S+ C+PGC++
Sbjct: 333 TNRAFVTKVVLGNGKTVVGRSVNSFDLNGKKYPLVYGKSASSSCGAASAGFCSPGCLDSK 392
Query: 352 LVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKE 411
VKGKIV+C S +N E + GA +++ ++ D V+ + S P + +D ++++SY
Sbjct: 393 RVKGKIVLCDSPQNPDEAQAMGAIASIVRSHRTD-VASIFSFPVSVLLEDDYNTVLSYMN 451
Query: 412 STKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGP 471
STK P A +LK+E + + APVV + SRGP
Sbjct: 452 STK-----------------------------NPKAAVLKSETIFNQRAPVVASYFSRGP 482
Query: 472 NAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAY 531
N I+P+ILKPDI+APG +I+AA+SP A SI D R+ KY++ +GTSMSCPH AGVAAY
Sbjct: 483 NTIIPDILKPDITAPGSEIVAAYSPDAPPSI--SDTRRVKYSVDTGTSMSCPHVAGVAAY 540
Query: 532 VKSFHPDWSPSAIKSAIMTTAWAMNSSK---NTEAEFAYGSGHVNPVKAINPGLVYETFK 588
+KSFHP WSPS I+SAIMTTAW MN+S N AEFAYG+GHV+P+ AI+PGLVYE K
Sbjct: 541 LKSFHPRWSPSMIQSAIMTTAWPMNASTSPFNELAEFAYGAGHVDPITAIHPGLVYEANK 600
Query: 589 QDYIKMLCNIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPR 648
D+I LC + Y +R+ISGD S+C K K+ P++LNYPSM AQVS+ K F V F R
Sbjct: 601 SDHIAFLCGLNYTAKNLRLISGDSSSCTKEQTKSLPRNLNYPSMTAQVSAAKPFKVIFRR 660
Query: 649 TVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSAS 708
TVTNVG N+TY+AKV+ SK+ +KVVP VLS KSL EKKSF+VT +G G +VSA
Sbjct: 661 TVTNVGRPNATYKAKVV-GSKLKVKVVPAVLSLKSLYEKKSFTVTASGAGPKAENLVSAQ 719
Query: 709 LVWSDGNHWVRSPIVVHA 726
L+WSDG H+VRSPIVV+A
Sbjct: 720 LIWSDGVHFVRSPIVVYA 737
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 726 | ||||||
| TAIR|locus:2153296 | 741 | AT5G59100 "AT5G59100" [Arabido | 0.567 | 0.556 | 0.574 | 7.4e-211 | |
| TAIR|locus:2102807 | 736 | AT3G46850 "AT3G46850" [Arabido | 0.566 | 0.558 | 0.554 | 1.2e-210 | |
| TAIR|locus:2168434 | 732 | SBT4.13 "AT5G59120" [Arabidops | 0.561 | 0.557 | 0.583 | 1.4e-205 | |
| TAIR|locus:2153291 | 736 | SBT4.12 "AT5G59090" [Arabidops | 0.560 | 0.552 | 0.570 | 1.6e-204 | |
| TAIR|locus:2168524 | 693 | AT5G59190 "AT5G59190" [Arabido | 0.557 | 0.584 | 0.550 | 1.5e-203 | |
| TAIR|locus:2168444 | 732 | AT5G59130 "AT5G59130" [Arabido | 0.603 | 0.598 | 0.516 | 9.6e-198 | |
| TAIR|locus:2154528 | 713 | AT5G58840 "AT5G58840" [Arabido | 0.524 | 0.534 | 0.551 | 1e-191 | |
| TAIR|locus:2154513 | 701 | AT5G58830 "AT5G58830" [Arabido | 0.515 | 0.533 | 0.539 | 5.6e-191 | |
| TAIR|locus:2129615 | 687 | AT4G15040 "AT4G15040" [Arabido | 0.544 | 0.574 | 0.544 | 1.8e-183 | |
| TAIR|locus:2144583 | 766 | AT5G03620 "AT5G03620" [Arabido | 0.566 | 0.536 | 0.459 | 5.6e-154 |
| TAIR|locus:2153296 AT5G59100 "AT5G59100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1207 (429.9 bits), Expect = 7.4e-211, Sum P(2) = 7.4e-211
Identities = 242/421 (57%), Positives = 301/421 (71%)
Query: 2 QVYIVYMGSLPEGE-YVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
QVYIVY+GSLP E Y S H +ILQE+ +E+ LVRSY++SFNGFAA+LT ER+
Sbjct: 33 QVYIVYLGSLPSREEYTPMSDHMSILQEITGESLIENRLVRSYKKSFNGFAARLTESERK 92
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKR--SVESNLIVGVIDTGIWPESE 118
+LA ME+VVSVFPSR L+L TT SW+FMGL I KR S+ES+ I+GVID+GI+PES+
Sbjct: 93 RLAGMERVVSVFPSRKLKLQTTSSWNFMGLKEGIKTKRTRSIESDTIIGVIDSGIYPESD 152
Query: 119 SFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPY--DTARDEEGHGSHTASTA 176
SFSD+GFGP PKKWKG C GGKNFTCNNK+IGAR YT TARD GHG+HTAS A
Sbjct: 153 SFSDQGFGPPPKKWKGTCAGGKNFTCNNKVIGARDYTAKSKANQTARDYSGHGTHTASIA 212
Query: 177 SGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITI 236
+GN V +++FYG+G GTARGGVP+ RIA YKVC GCD ++ AFDDAIADGVDVI+I
Sbjct: 213 AGNAVANSNFYGLGNGTARGGVPAARIAVYKVCDNEGCDGEAMMSAFDDAIADGVDVISI 272
Query: 237 SIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTA--SVAPWLMSVAASTTDR 294
SI D+ F ED I+IGAFHAMA GVLT+N+AGN+GP ++ S APW+ SVAAS T+R
Sbjct: 273 SIVLDNIPPFEEDPIAIGAFHAMAVGVLTVNAAGNNGPKISTVTSTAPWVFSVAASVTNR 332
Query: 295 LFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXX-NPGCVNGSLV 353
F+ KV LG+GK + G S+N++ M G +PLVYGK P C++G LV
Sbjct: 333 AFMAKVVLGDGKILIGRSVNTYDMNGTNYPLVYGKSAALSTCSVDKARLCEPKCLDGKLV 392
Query: 354 KGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKEST 413
KGKIV+C S K E +K GA G+++ N E D+ +F+ S P +S D SL+SY ST
Sbjct: 393 KGKIVLCDSTKGLIEAQKLGAVGSIVKNPEPDR-AFIRSFPVSFLSNDDYKSLVSYMNST 451
Query: 414 K 414
K
Sbjct: 452 K 452
|
|
| TAIR|locus:2102807 AT3G46850 "AT3G46850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 1.2e-210, Sum P(2) = 1.2e-210
Identities = 235/424 (55%), Positives = 301/424 (70%)
Query: 2 QVYIVYMGSLPEG-EYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
QVYIVYMG+LP +Y+ S H +ILQ+V S++D LVR+Y+RSFNGFAA+LT ER+
Sbjct: 32 QVYIVYMGALPSRVDYMPMSHHTSILQDVTGESSIQDRLVRNYKRSFNGFAARLTESERE 91
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRS--VESNLIVGVIDTGIWPESE 118
LASM++VVSVFPS+ L L TT SW+FMGL KR+ +ES+ I+GVID+GI+PES+
Sbjct: 92 ILASMDEVVSVFPSKNLNLQTTTSWNFMGLKEGKRTKRNPLIESDTIIGVIDSGIYPESD 151
Query: 119 SFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA----PYDTARDEEGHGSHTAS 174
SFS +GFGP PKKWKG C GG NFTCNNK+IGARYYTP P ++ARD GHGSHTAS
Sbjct: 152 SFSGKGFGPPPKKWKGVCKGGTNFTCNNKLIGARYYTPKLEGFP-ESARDNTGHGSHTAS 210
Query: 175 TASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPG--GCDSAGVLGAFDDAIADGVD 232
A+GN VK SFYG+G GT RGGVP+ RIA YKVC PG C S G+L AFDDAIAD VD
Sbjct: 211 IAAGNAVKHVSFYGLGNGTVRGGVPAARIAVYKVCDPGVIRCTSDGILAAFDDAIADKVD 270
Query: 233 VITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPG--LTASVAPWLMSVAAS 290
+IT+S+G D+ F ED ++IGAFHAMAKG+LT+N AGN+GP S+APWL +VAAS
Sbjct: 271 IITVSLGADAVGTFEEDTLAIGAFHAMAKGILTVNGAGNNGPERRTIVSMAPWLFTVAAS 330
Query: 291 TTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXXNPGCVNG 350
+R F+ KV LGNGK I G S+NSF + G+++PLVYGK +PGC++
Sbjct: 331 NMNRAFITKVVLGNGKTIVGRSVNSFDLNGKKYPLVYGKSASSRCDASSAGFCSPGCLDS 390
Query: 351 SLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYK 410
VKGKIV+C + +N E + GA +++ N ++ + V S P +S+D + ++SY
Sbjct: 391 KRVKGKIVLCDTQRNPGEAQAMGAVASIV-RNPYEDAASVFSFPVSVLSEDDYNIVLSYV 449
Query: 411 ESTK 414
STK
Sbjct: 450 NSTK 453
|
|
| TAIR|locus:2168434 SBT4.13 "AT5G59120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1195 (425.7 bits), Expect = 1.4e-205, Sum P(2) = 1.4e-205
Identities = 244/418 (58%), Positives = 298/418 (71%)
Query: 2 QVYIVYMGSLPE-GEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
QVYIVYMGSL +Y +S H NILQEV S+E LVRSY+RSFNGFAA+LT ER+
Sbjct: 30 QVYIVYMGSLSSRADYTPTSDHMNILQEVTGESSIEGRLVRSYKRSFNGFAARLTESERE 89
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRS--VESNLIVGVIDTGIWPESE 118
++A M VVSVFP++ LQL TT SWDFMGL I KR+ VES+ I+GVID+GI PES+
Sbjct: 90 RVAKMVGVVSVFPNKKLQLQTTTSWDFMGLKEGIKTKRNPTVESDTIIGVIDSGITPESQ 149
Query: 119 SFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASG 178
SFSD+GFGP P+KWKG C+GGKNFTCNNK+IGAR YT + RD +GHG+HTASTA+G
Sbjct: 150 SFSDKGFGPPPQKWKGVCSGGKNFTCNNKLIGARDYTS---EGTRDMDGHGTHTASTAAG 206
Query: 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISI 238
N V DASF+G+G GT RGGVP+ R+AAYKVC P GC S +L AFDDAIADGVD+ITISI
Sbjct: 207 NAVVDASFFGIGNGTVRGGVPASRVAAYKVCTPTGCSSEALLSAFDDAIADGVDLITISI 266
Query: 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPG-LTAS-VAPWLMSVAASTTDRLF 296
G +A F D I+IGAFHAMAKGVLT+NSAGNSGP ++ S VAPW+++VAASTT+R F
Sbjct: 267 GDKTASMFQNDPIAIGAFHAMAKGVLTVNSAGNSGPKPISVSGVAPWILTVAASTTNRGF 326
Query: 297 VDKVALGNGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXX-NPGCVNGSLVKG 355
V KV LGNGK + G S+N++ MKG+ +PLVYGK CV+ S VKG
Sbjct: 327 VTKVVLGNGKTLVGKSVNAYEMKGKDYPLVYGKSAASSACDAESAGLCELSCVDKSRVKG 386
Query: 356 KIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKEST 413
KI++C V GA G + + D V+F+ LPA + + SL+SY EST
Sbjct: 387 KILVCGGPGGLKIVESVGAVGLIYRTPKPD-VAFIHPLPAAGLLTEDFESLVSYLEST 443
|
|
| TAIR|locus:2153291 SBT4.12 "AT5G59090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1191 (424.3 bits), Expect = 1.6e-204, Sum P(2) = 1.6e-204
Identities = 238/417 (57%), Positives = 294/417 (70%)
Query: 2 QVYIVYMGSLPE-GEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
QVYIVYMGSL +Y+ +S H +ILQ+V S+E LVRSY+RSFNGFAA+LT ER
Sbjct: 31 QVYIVYMGSLSSRADYIPTSDHMSILQQVTGESSIEGRLVRSYKRSFNGFAARLTESERT 90
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRS--VESNLIVGVIDTGIWPESE 118
+A +E VVSVFP++ LQLHTT SWDFMG+ KR+ +ES+ I+GVIDTGIWPES+
Sbjct: 91 LIAEIEGVVSVFPNKILQLHTTTSWDFMGVKEGKNTKRNLAIESDTIIGVIDTGIWPESK 150
Query: 119 SFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASG 178
SFSD+GFGP PKKWKG C+GGKNFTCNNK+IGAR YT + RD GHG+HTASTA+G
Sbjct: 151 SFSDKGFGPPPKKWKGVCSGGKNFTCNNKLIGARDYTS---EGTRDTSGHGTHTASTAAG 207
Query: 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISI 238
N VKD SF+G+G GT RGGVP+ RIAAYKVC GC S +L +FDDAIADGVD+ITISI
Sbjct: 208 NAVKDTSFFGIGNGTVRGGVPASRIAAYKVCTDSGCSSEALLSSFDDAIADGVDLITISI 267
Query: 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLF 296
G F +D I+IGAFHAMAKG+LT++SAGNSGP T + VAPW+ +VAASTT+R F
Sbjct: 268 GFQFPSIFEDDPIAIGAFHAMAKGILTVSSAGNSGPKPTTVSHVAPWIFTVAASTTNRGF 327
Query: 297 VDKVALGNGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXX-NPGCVNGSLVKG 355
+ KV LGNGK ++G S+N+F MKG+++PLVYGK P C+N S VKG
Sbjct: 328 ITKVVLGNGKTLAGRSVNAFDMKGKKYPLVYGKSAASSACDAKTAALCAPACLNKSRVKG 387
Query: 356 KIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKES 412
KI++C Y + GA + + D V+F LPA + SL+SY ES
Sbjct: 388 KILVCGGPSGYKIAKSVGAIAIIDKSPRPD-VAFTHHLPASGLKAKDFKSLVSYIES 443
|
|
| TAIR|locus:2168524 AT5G59190 "AT5G59190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.5e-203, Sum P(2) = 1.5e-203
Identities = 225/409 (55%), Positives = 291/409 (71%)
Query: 8 MGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEK 67
MG+LPE +Y S H +ILQ++V + +LVRSY+RSFNGFAA L+ E QKL +M++
Sbjct: 1 MGTLPEIKYSPPSHHLSILQKLVGTIAASHLLVRSYKRSFNGFAANLSQAESQKLQNMKE 60
Query: 68 VVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGP 127
VVSVFPS++ +L TTRSWDF+G R+ ES++IVGVID+GIWPESESF DEGFGP
Sbjct: 61 VVSVFPSKSHELTTTRSWDFVGFGEKARRESVKESDVIVGVIDSGIWPESESFDDEGFGP 120
Query: 128 APKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFY 187
PKKWKG+C GG F CNNK+IGAR+Y D+ARDEEGHG+HTASTA+GN V+ ASFY
Sbjct: 121 PPKKWKGSCKGGLKFACNNKLIGARFYNKFA-DSARDEEGHGTHTASTAAGNAVQAASFY 179
Query: 188 GVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFS 247
G+ QGTARGGVPS RIAAYKVCF C+ +L AFDDAIADGVDVI+ISI D +
Sbjct: 180 GLAQGTARGGVPSARIAAYKVCF-NRCNDVDILAAFDDAIADGVDVISISISADYVSNLL 238
Query: 248 EDAISIGAFHAMAKGVLTLNSAGNSGP--GLTASVAPWLMSVAASTTDRLFVDKVALGNG 305
+++IG+FHAM +G++T SAGN+GP G A+V+PW+++VAAS TDR F+D+V LGNG
Sbjct: 239 NASVAIGSFHAMMRGIITAGSAGNNGPDQGSVANVSPWMITVAASGTDRQFIDRVVLGNG 298
Query: 306 KAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXXNPGCVNGSLVKGKIVICQSFKN 365
KA++G S+N+F + G +FP+VYG+ + GCV+ LVKGKIV+C F
Sbjct: 299 KALTGISVNTFNLNGTKFPIVYGQNVSRNCSQAQAGYCSSGCVDSELVKGKIVLCDDFLG 358
Query: 366 YPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTK 414
Y E AGA G ++ N +FVV PA ++ + S+ SY ES +
Sbjct: 359 YREAYLAGAIGVIVQNTLLPDSAFVVPFPASSLGFEDYKSIKSYIESAE 407
|
|
| TAIR|locus:2168444 AT5G59130 "AT5G59130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1129 (402.5 bits), Expect = 9.6e-198, Sum P(2) = 9.6e-198
Identities = 238/461 (51%), Positives = 303/461 (65%)
Query: 2 QVYIVYMGSLPE-GEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
QVYIVYMGSLP +Y S H NILQEV S+E LVRSY+RSFNGF A+LT ER+
Sbjct: 34 QVYIVYMGSLPSRADYTPMSHHMNILQEVARESSIEGRLVRSYKRSFNGFVARLTESERE 93
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKR--SVESNLIVGVIDTGIWPESE 118
++A VVSVFP++ L+L T+ SWDFMGL KR SVES+ I+GV D GIWPESE
Sbjct: 94 RVA----VVSVFPNKKLKLQTSASWDFMGLKEGKGTKRNPSVESDTIIGVFDGGIWPESE 149
Query: 119 SFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASG 178
SFSD+GFGP PKKWKG C GGKNFTCNNK+IGAR+Y+P ARD GHG+HTAS A+G
Sbjct: 150 SFSDKGFGPPPKKWKGICAGGKNFTCNNKLIGARHYSPGD---ARDSTGHGTHTASIAAG 206
Query: 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISI 238
N V + SF+G+G GT RG VP+ RIA Y+VC G C +L AFDDAI+DGVD+ITISI
Sbjct: 207 NAVANTSFFGIGNGTVRGAVPASRIAVYRVC-AGECRDDAILSAFDDAISDGVDIITISI 265
Query: 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTA--SVAPWLMSVAASTTDRLF 296
G + F +D I+IGAFHAM+KG+LT+N+AGN+GP + S+APWL++VAAST +R F
Sbjct: 266 GDINVYPFEKDPIAIGAFHAMSKGILTVNAAGNTGPDTASITSLAPWLLTVAASTANREF 325
Query: 297 VDKVALGNGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXX-NPGCVNGSLVKG 355
V KV LG+GK + G S+N F +KG++FPLVYGK P C++ SLVKG
Sbjct: 326 VSKVVLGDGKTLVGKSVNGFDLKGKKFPLVYGKSAALSLSQAKCAEDCTPECLDASLVKG 385
Query: 356 KIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKY 415
KI++C F Y K A +++ +++ LP + +D S++SY +S K
Sbjct: 386 KILVCNRFLPYVAYTKRAVAAIFEDGSDWAQIN---GLPVSGLQKDDFESVLSYFKSEKS 442
Query: 416 IFYILRKMLLFHFIFFQKIIHSLYLDYRTP---VAEILKTE 453
+ K IF+Q L R P VA+ILK +
Sbjct: 443 PEAAVLKS---ESIFYQTAPKILSFSSRGPNIIVADILKPD 480
|
|
| TAIR|locus:2154528 AT5G58840 "AT5G58840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1053 (375.7 bits), Expect = 1.0e-191, Sum P(2) = 1.0e-191
Identities = 220/399 (55%), Positives = 270/399 (67%)
Query: 2 QVYIVYMGSLPEG--EYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDER 59
QVY+VYMGSLP EY S H +ILQEV SVE LVRSY+RSFNGFAA+LT ER
Sbjct: 33 QVYVVYMGSLPSSRLEYTPMSHHMSILQEVTGESSVEGRLVRSYKRSFNGFAARLTESER 92
Query: 60 QKLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRS--VESNLIVGVIDTGIWPES 117
+++A ME VVSVFP +L TT SWDF+GL KR+ +ES+ I+G ID+GIWPES
Sbjct: 93 ERVAEMEGVVSVFPDINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPES 152
Query: 118 ESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTAS 177
ESFSD+GFGP PKKWKG C+ GKNFTCNNK+IGAR YT + RD EGHG+HTASTA+
Sbjct: 153 ESFSDKGFGPPPKKWKGVCSAGKNFTCNNKLIGARDYTN---EGTRDIEGHGTHTASTAA 209
Query: 178 GNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITIS 237
GN VK+ SFYG+G GTARGGVP+ RIAAYK C GC + VL AFDDAIADGVD+I+IS
Sbjct: 210 GNAVKNTSFYGIGNGTARGGVPASRIAAYKACSEMGCTTESVLSAFDDAIADGVDLISIS 269
Query: 238 IGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP--GLTASVAPWLMSVAASTTDRL 295
+G + + D I+IGAFHAM KG+LT+ SAGN GP G SVAPW+++VAAS T+R
Sbjct: 270 LGANLVRTYETDPIAIGAFHAMVKGILTVQSAGNGGPNPGSVMSVAPWILTVAASNTNRG 329
Query: 296 FVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXXNPGCVNGSLVKG 355
FV KV LGNGK G S+N+F +KG+ +PL YG V+ V
Sbjct: 330 FVTKVVLGNGKTFVGKSLNAFDLKGKNYPL-YGGSTDGPLLRGKIL------VSEDKVSS 382
Query: 356 KIVICQSFKNYPEVRKAGAA-GTVLLNNEFDKV-SFVVS 392
+IV+ +NY + + L ++FD V S+V S
Sbjct: 383 EIVVANINENYHDYAYVSILPSSALSKDDFDSVISYVNS 421
|
|
| TAIR|locus:2154513 AT5G58830 "AT5G58830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1028 (366.9 bits), Expect = 5.6e-191, Sum P(2) = 5.6e-191
Identities = 214/397 (53%), Positives = 272/397 (68%)
Query: 2 QVYIVYMGSLP-EGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ 60
QVY+VYMGSLP + Y S H NILQEV G S Y+RSFNGF+A LT ER+
Sbjct: 32 QVYVVYMGSLPSQPNYTPMSNHINILQEVT-GES--------YKRSFNGFSALLTESERE 82
Query: 61 KLASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRS--VESNLIVGVIDTGIWPESE 118
+A ME VVSVF S+ +L TT SWDFMG+ KR+ VES+ I+G ID+GIWPESE
Sbjct: 83 GVAEMEGVVSVFRSKNYKLQTTASWDFMGMKEGKNTKRNFAVESDTIIGFIDSGIWPESE 142
Query: 119 SFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASG 178
SFSD+GFGP PKKWKG C GGKNFTCNNK+IGAR YT + RD +GHG+HT STA+G
Sbjct: 143 SFSDKGFGPPPKKWKGVCKGGKNFTCNNKLIGARDYTS---EGTRDLQGHGTHTTSTAAG 199
Query: 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISI 238
N V D SF+G+G GTARGGVP+ R+AAYKVC GC VL AFDDAIADGVD+I++S+
Sbjct: 200 NAVADTSFFGIGNGTARGGVPASRVAAYKVCTITGCSDDNVLSAFDDAIADGVDLISVSL 259
Query: 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTA--SVAPWLMSVAASTTDRLF 296
GGD ++ED I+IGAFHAMAKG+LT++SAGN+GP T SVAPW+++VAA+TT+R F
Sbjct: 260 GGDYPSLYAEDTIAIGAFHAMAKGILTVHSAGNAGPNPTTVVSVAPWMLTVAATTTNRRF 319
Query: 297 VDKVALGNGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXXNPGCVNGSLVKGK 356
+ KV LGNGK + G S+N+F +KG+++PL YG ++GS V
Sbjct: 320 LTKVVLGNGKTLVGKSVNAFDLKGKKYPLEYGDYLNESLVKGKILVSR--YLSGSEVAVS 377
Query: 357 IVICQSFKNYPEVRKAGAAGTVLLNNEFDK-VSFVVS 392
+ + K+Y + + VL ++FD VS++ S
Sbjct: 378 FITTDN-KDYASISSRPLS--VLSQDDFDSLVSYINS 411
|
|
| TAIR|locus:2129615 AT4G15040 "AT4G15040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1063 (379.3 bits), Expect = 1.8e-183, Sum P(2) = 1.8e-183
Identities = 225/413 (54%), Positives = 274/413 (66%)
Query: 8 MGSLPEG-EYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASME 66
MG+LP Y S HQNILQEV+ SVED LVRSY RSFNGFAAKLT E+ KL ME
Sbjct: 1 MGALPSKISYSPMSHHQNILQEVIESSSVEDYLVRSYGRSFNGFAAKLTESEKDKLIGME 60
Query: 67 KVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFG 126
VVSVFPS +L TTRS++FMGL VESN+IVGVID GIWPES+SFSDEG G
Sbjct: 61 GVVSVFPSTVYKLFTTRSYEFMGLGDKSNNVPEVESNVIVGVIDGGIWPESKSFSDEGIG 120
Query: 127 PAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASF 186
P PKKWKG C GG NFTCN K+IGAR+Y +D+ARD + HGSHTASTA+GN+VK S
Sbjct: 121 PIPKKWKGTCAGGTNFTCNRKVIGARHYV---HDSARDSDAHGSHTASTAAGNKVKGVSV 177
Query: 187 YGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGD-SAVD 245
GV +GTARGGVP GRIA YKVC P GC+ +L AFDDAIADGVDV+TIS+GG + VD
Sbjct: 178 NGVAEGTARGGVPLGRIAVYKVCEPLGCNGERILAAFDDAIADGVDVLTISLGGGVTKVD 237
Query: 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTAS--VAPWLMSVAASTTDRLFVDKVALG 303
D I+IG+FHAM KG++T + GN+G L + +APWL+SVAA +TDR FV V G
Sbjct: 238 I--DPIAIGSFHAMTKGIVTTVAVGNAGTALAKADNLAPWLISVAAGSTDRKFVTNVVNG 295
Query: 304 NGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXXXXXNPGCVNGSLVKGKIVICQSF 363
+ K + G SIN F ++G+++PL YGK GC+N V+GKIV+C
Sbjct: 296 DDKMLPGRSINDFDLEGKKYPLAYGKTASNNCTEELARGCASGCLN--TVEGKIVVCDVP 353
Query: 364 KNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYI 416
N E + AGA GT+L + D + AVA D+ +Y+E Y+
Sbjct: 354 NNVMEQKAAGAVGTILHVTDVDTPG--LGPIAVATLDDT-----NYEELRSYV 399
|
|
| TAIR|locus:2144583 AT5G03620 "AT5G03620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 5.6e-154, Sum P(2) = 5.6e-154
Identities = 200/435 (45%), Positives = 263/435 (60%)
Query: 4 YIVYMGSLPEGEYVTSSQ-HQNILQEVVVGRS-VEDILVRSYRRSFNGFAAKLTVDERQK 61
YIVYMG E V +++ H N+L V+ S ++ + SY ++ NGF A+L E +K
Sbjct: 35 YIVYMGEATENSLVEAAENHHNLLMTVIGDESKARELKIYSYGKNINGFVARLFPHEAEK 94
Query: 62 LASMEKVVSVFPSRTLQLHTTRSWDFMGLNLSITRKRSV--ESNLIVGVIDTGIWPESES 119
L+ E VVSVF + QLHTTRSWDF+GL + KRSV ESN+IVGV+DTGI ES S
Sbjct: 95 LSREEGVVSVFKNTQRQLHTTRSWDFLGL-VESKYKRSVGIESNIIVGVLDTGIDVESPS 153
Query: 120 FSDEGFGPAPKKWKGACNGGKNFT-CNNKIIGARYY------TP-APYDTARDEEGHGSH 171
F+D+G GP P KWKG C G NFT CNNK+IGA+Y+ P DTA D +GHG+H
Sbjct: 154 FNDKGVGPPPAKWKGKCVTGNNFTRCNNKVIGAKYFHIQSEGLPDGEGDTAADHDGHGTH 213
Query: 172 TASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGV 231
T+ST +G V AS +G+ GTARGGVPS RIAAYKVC+ GC +L AFD+AI+DGV
Sbjct: 214 TSSTIAGVSVSSASLFGIANGTARGGVPSARIAAYKVCWDSGCTDMDMLAAFDEAISDGV 273
Query: 232 DVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL--TASVAPWLMSVAA 289
D+I+ISIGG S + F ED I+IGAFHAM +G+LT SAGN+GPGL +++APW+M+VAA
Sbjct: 274 DIISISIGGAS-LPFFEDPIAIGAFHAMKRGILTTCSAGNNGPGLFTVSNLAPWVMTVAA 332
Query: 290 STTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKXXXXXXXXXXX--XXXNPGC 347
++ DR F V LGNG SG S+N F + + +PL G PG
Sbjct: 333 NSLDRKFETVVKLGNGLTASGISLNGFNPRKKMYPLTSGSLASNLSAGGYGEPSTCEPGT 392
Query: 348 VNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSL--PA-VAVSQDSLS 404
+ V GK+V C++ + E G G + +V L P +A S
Sbjct: 393 LGEDKVMGKVVYCEAGR---EEGGNGGQGQDHVVRSLKGAGVIVQLLEPTDMATSTLIAG 449
Query: 405 SLISYKESTKYIFYI 419
S + +++ TK YI
Sbjct: 450 SYVFFEDGTKITEYI 464
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 726 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 6e-98 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-34 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-23 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-22 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 9e-17 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 1e-16 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 4e-16 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 8e-16 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-14 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 7e-14 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-13 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 1e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 6e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 7e-13 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 1e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-12 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 4e-12 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-11 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 5e-11 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 6e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-10 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-09 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-09 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 3e-09 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 4e-09 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 8e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 9e-08 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-07 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-07 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 5e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 1e-06 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-06 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 5e-06 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 6e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 7e-06 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-05 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 2e-05 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 2e-04 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 3e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 3e-04 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 7e-04 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 7e-04 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 304 bits (781), Expect = 6e-98
Identities = 125/270 (46%), Positives = 156/270 (57%), Gaps = 27/270 (10%)
Query: 77 LQLHTTRSWDFMGLNLSITRKRSVESN----LIVGVIDTGIWPESESFSDEGFGPAPKKW 132
QLHTTRS DF+GL + +N +I+GV+DTGIWPE SF+D G GP P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 133 KGACNGGKNFT---CNNKIIGARYYT-----------PAPYDTARDEEGHGSHTASTASG 178
G C G++F CNNK+IGARY++ Y + RD +GHG+HTASTA+G
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP-GGCDSAGVLGAFDDAIADGVDVITIS 237
N V +AS G GTA G P RIA YKVC+P GGC + +L A D AIADGVDVI+ S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 238 IGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL--TASVAPWLMSVAASTTDRL 295
IGG + D ED I+I HA+ G+ SAGNSGPG +VAPW+ +VAAST L
Sbjct: 181 IGG-GSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---L 236
Query: 296 FVDKVALGNG--KAISGYSINSFAMKGRRF 323
D A G A + + +G F
Sbjct: 237 KPDIAAPGVDILAAWTPEGADPGDARGEDF 266
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-34
Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 479 LKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD 538
LKPDI+APGVDILAA++P D D R + ISGTSM+ PH AGVAA +KS HPD
Sbjct: 236 LKPDIAAPGVDILAAWTP---EGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 539 WSPSAIKSAIMTTAW 553
WSP+AIKSA+MTTA+
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 104 LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNN-KIIGARYYTPAPYDT- 161
+ V VIDTGI GF GG +F ++ + R Y D
Sbjct: 4 VKVAVIDTGIDYTHPDLGGPGFPND------KVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVL 220
A D GHG+H A +GN V G +G A P + AYKV PGG + ++
Sbjct: 58 AGDATGHGTHVAGIIAGNGVN----VGTIKGVA----PKADLYAYKVLGPGGSGTTDVII 109
Query: 221 GAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL---- 276
A + A+ DG+DVI +S+G S+V+ +D +I +A+ GV+ + +AGNSGP
Sbjct: 110 AAIEQAVDDGMDVINLSLG--SSVNGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIG 167
Query: 277 TASVAPWLMSVAASTT 292
+ + AP ++V AST
Sbjct: 168 SPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 2e-22
Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 455 VKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNI 514
+A V SSRGP +KPDI APGVDI++ A S Y
Sbjct: 184 ADVAEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMST----APGSGT-------GYAR 231
Query: 515 ISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAE-FAYGSGHVN 573
+SGTSM+ PH AG AA +K HPDWSP+ IK+A+M TA + S G+G V+
Sbjct: 232 MSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVD 291
Query: 574 PVKA 577
++A
Sbjct: 292 ALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 9e-17
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 302 LGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQ 361
LGNGK I G S+ +K +PLVY S + ++ + C PG ++ S VKGKIV+C
Sbjct: 4 LGNGKTIVGQSLYPGNLK--TYPLVYK---SANSGDVDASLCLPGSLDPSKVKGKIVLCD 58
Query: 362 SFKNYP------EVRKAGAAGTVLLNNEF---DKVSFVVSLPAVAVSQDSLSSLISYKES 412
N V+ AG AG +L N+ D V+ LPAV V + ++++SY S
Sbjct: 59 RGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINS 118
Query: 413 TK 414
T
Sbjct: 119 TS 120
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 1e-16
Identities = 51/196 (26%), Positives = 75/196 (38%), Gaps = 36/196 (18%)
Query: 105 IVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARD 164
V VIDTG+ P+ G +GG + N D
Sbjct: 2 TVAVIDTGVDPDHPDLDGLFGG---------GDGGNDDDDNEN----------GPTDPDD 42
Query: 165 EEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP-GGCDSAGVLGAF 223
GHG+H A + + G G P ++ KV G S+ + A
Sbjct: 43 GNGHGTHVAGIIAASA---------NNGGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAI 93
Query: 224 DDAIAD-GVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTASV-- 280
D A AD G DVI +S+GG + S + +I A GVL + +AGN GP ++
Sbjct: 94 DYAAADQGADVINLSLGGPGSPPSSALSEAIDYALA-KLGVLVVAAAGNDGPDGGTNIGY 152
Query: 281 ---APWLMSVAASTTD 293
+P +++V A D
Sbjct: 153 PAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 4e-16
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 470 GPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVA 529
P++ E KPD++APGVD+ +A A+ D + Y +SGTSM+ PH AGVA
Sbjct: 180 APDSPPDEYTKPDVAAPGVDVYSARQ---GANGDGQ------YTRLSGTSMAAPHVAGVA 230
Query: 530 AYVKSFHPDWSPSAIKSAIMTTAW 553
A + + HPD SP IK A+ TA+
Sbjct: 231 ALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 8e-16
Identities = 61/190 (32%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 106 VGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY---TPAPYDTA 162
V V+DTGI + FGP K GG +F +G Y P P D
Sbjct: 17 VAVVDTGIDYTHPALG-GCFGPGCK-----VAGGYDF------VGDDYDGTNPPVPDDDP 64
Query: 163 RDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKV--CFPGGCDSAGVL 220
D +GHG+H A + N F GV P + AY+V C G ++
Sbjct: 65 MDCQGHGTHVAGIIAANP-NAYGFTGVA--------PEATLGAYRVFGC-SGSTTEDTII 114
Query: 221 GAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTASV 280
AF A DG DVIT S+GG S +SED ++ A + GV+ +AGN G
Sbjct: 115 AAFLRAYEDGADVITASLGGPSG--WSEDPWAVVASRIVDAGVVVTIAAGNDG-----ER 167
Query: 281 APWLMSVAAS 290
P+ S AS
Sbjct: 168 GPFYASSPAS 177
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FS+ G KPDI APG +IL+ S D Y+ SGTSM+ P
Sbjct: 180 FSNYGGPVDGI---KPDIVAPGGNILS--------SGPGGDLGG--YDSHSGTSMAAPLV 226
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
AG AA + S +P +P +++ ++TTA + S + ++G G +N KA+
Sbjct: 227 AGAAALLLSANPSLTPETLRALLVTTATDLGSMGL---DRSFGYGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 20/127 (15%)
Query: 460 APVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTS 519
A V FSS GP + LKPD++APG +IL+ + PLA Y ++SGTS
Sbjct: 185 ASVDSYFSSWGPTNEL--YLKPDVAAPGGNILSTY-PLAGGG----------YAVLSGTS 231
Query: 520 MSCPHAAGVAA-YVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAY------GSGHV 572
M+ P+ AG AA +++ H SP+ ++ + +TA + S T A G+G V
Sbjct: 232 MATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLV 291
Query: 573 NPVKAIN 579
N KA+
Sbjct: 292 NAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 7e-14
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSSRGP +KPD+ APG +I++ SP SGTSM+ PH
Sbjct: 183 FSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM----SGTSMATPHV 236
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTA 552
+G A + +P +P +K + TA
Sbjct: 237 SGAIALLLQANPILTPDEVKCILRDTA 263
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APGVDIL+A I S+ +SGTSM+ PH AG+AAY+ S PD SP
Sbjct: 194 DIFAPGVDILSA-------WIGSDTA----TATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 542 SAIKSAIMTTA 552
+ +K+ ++ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-13
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 3 VYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKL 62
YIV V SS + ++ SY+ FNGFAAKLT +E +KL
Sbjct: 1 TYIVKFKDGVSKAAVFSSHKSWHAS--SKEEAAGASILYSYKHGFNGFAAKLTEEEAEKL 58
Query: 63 ASMEKVVSVFPSRTLQLH 80
V V P + ++LH
Sbjct: 59 RKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 28/140 (20%)
Query: 452 TEAVKDFDAPVVVGFSSRGPNAIVPEI-LKPDISAPGVDILAAFSPLAQASIDSEDKRKP 510
+ V + + + GFSS GP P++ LKPDI+APG +I + +
Sbjct: 223 NKKVPNPNGGQMSGFSSWGP---TPDLDLKPDITAPGGNIYSTVN-------------DN 266
Query: 511 KYNIISGTSMSCPHAAGVAA----YVKSFHPDWSP----SAIKSAIMTTAWAMNSSKNTE 562
Y +SGTSM+ PH AG +A +K +P S +K+ +M TA S++T+
Sbjct: 267 TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTK 326
Query: 563 AEFA---YGSGHVNPVKAIN 579
++ G+G ++ KAI
Sbjct: 327 TYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 20/88 (22%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPH 524
FS+ G + D++APGVDIL S Y +SGTSM+ PH
Sbjct: 191 SFSNYGKKTV-------DLAAPGVDIL---------STSPGGG----YGYMSGTSMATPH 230
Query: 525 AAGVAAYVKSFHPDWSPSAIKSAIMTTA 552
AG AA + S +P+ + + IK AI+++A
Sbjct: 231 VAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-12
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 11/72 (15%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDW 539
DI+APG DIL++ + Y +SGTSM+ P AGVAA + S +PD
Sbjct: 181 GVDIAAPGGDILSSPTTG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDL 229
Query: 540 SPSAIKSAIMTT 551
+P+ +K+A+++T
Sbjct: 230 TPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 59/243 (24%), Positives = 89/243 (36%), Gaps = 53/243 (21%)
Query: 105 IVGVIDTGIWPESESF-----SDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYT---P 156
+V VID+G+ P ++F S + + K G N K+ A Y
Sbjct: 14 VVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND 73
Query: 157 APYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKV----CFPG 212
D HG H A +GN ++ + G+ +G A P ++ A KV
Sbjct: 74 DILDEDDGSS-HGMHVAGIVAGNGDEEDNGEGI-KGVA----PEAQLLAMKVFSNPEGGS 127
Query: 213 GCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAF-HAMAKGVLTLNSAGN 271
D A A +DA+ G DVI +S+G + D A A GV+ + +AGN
Sbjct: 128 TYDDA-YAKAIEDAVKLGADVINMSLGSTAGFV-DLDDPEQQAIKRAREAGVVVVVAAGN 185
Query: 272 SG----------------------PGLTASVAPWLMSVAASTTDRLFVDKVALGNGKAIS 309
G P V ++VA++ KV NG +S
Sbjct: 186 DGNSGSGTSKPLATNNPDTGTVGSPATADDV----LTVASANK------KVPNPNGGQMS 235
Query: 310 GYS 312
G+S
Sbjct: 236 GFS 238
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP +++APGVDIL+ + Y +SGTSM+ PH
Sbjct: 165 FSSTGPE--------VELAAPGVDILSTYPNN-------------DYAYLSGTSMATPHV 203
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTT 551
AGVAA V S P+ + + ++ A+ T
Sbjct: 204 AGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 459 DAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGT 518
++ V FSSRGP +KPD+ APG IL+A S S+ Y SGT
Sbjct: 197 NSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSA----YTSKSGT 250
Query: 519 SMSCPHAAGVAA----------YVKSFHPDWSPSAIKSAIMTTA 552
SM+ P AG AA Y F+P S + +K+ ++ +A
Sbjct: 251 SMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 44/204 (21%), Positives = 70/204 (34%), Gaps = 45/204 (22%)
Query: 105 IVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAP-YDTAR 163
VGV+DTGI S + G + P
Sbjct: 1 TVGVLDTGIDVNHPDLSG------------------RYIGLAYRNGYDFVDNDPDPTPDD 42
Query: 164 DEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAF 223
D GHG+H A + + + GV P+ ++ + KV G + + GA
Sbjct: 43 DNNGHGTHVAGIIAAGDNNGSGGVGV--------APNAKLESVKVLPGSGGTDSELAGAI 94
Query: 224 DDAI--ADGVDVITISIGGDSAVD-FSEDAISIGAFH-AMAKGVLTLNSAGNSG------ 273
+ A + + VI +S+G AI A + A KG L + +AGN G
Sbjct: 95 EWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNN 154
Query: 274 ----PGLTASVAPWLMSVAASTTD 293
P ++ ++V A T +
Sbjct: 155 PVSDPASANNI----ITVGAVTEN 174
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 34/190 (17%)
Query: 106 VGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165
V V+DTG+ + G +F N +I + D
Sbjct: 4 VAVLDTGVDADHPDL------------AGRVAQWADFDENRRISATEVF---------DA 42
Query: 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDD 225
GHG+H + T G K GV G A P + KV GG + ++ +
Sbjct: 43 GGHGTHVSGTIGGGGAK-----GVYIGVA----PEADLLHGKVLDDGGGSLSQIIAGMEW 93
Query: 226 AIADGVDVITISIGGDS-AVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTASVAPWL 284
A+ DV+++S+GG + D E+A + A G L + SAGN G G + S
Sbjct: 94 AVEKDADVVSMSLGGTYYSEDPLEEA--VEALSN-QTGALFVVSAGNEGHGTSGSPGSAY 150
Query: 285 MSVAASTTDR 294
+++ DR
Sbjct: 151 AALSVGAVDR 160
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 21/96 (21%)
Query: 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSC 522
+ FS RGP +KPDI+APGV+IL A Y SGTS++
Sbjct: 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTASP-------------GGGYTTRSGTSVAA 403
Query: 523 PHAAGVAA------YVKSFHPDWSPSAIKSAIMTTA 552
AG A V+ P IK+ ++ A
Sbjct: 404 AIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 53/211 (25%), Positives = 78/211 (36%), Gaps = 40/211 (18%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKN--FTCNNKII----GARYYT 155
+++V VIDTG+ ++ W N N + G +
Sbjct: 2 GDVVVAVIDTGV-----DYNHPDL--KDNMWVNPGEIPGNGIDDDGNGYVDDIYGWNFVN 54
Query: 156 PAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG 213
D+ GHG+H A A GN G G A G + +I K G
Sbjct: 55 NDNDPM--DDNGHGTHVAGIIGAVGNN---------GIGIA-GVAWNVKIMPLKFLGADG 102
Query: 214 CDS-AGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNS 272
+ + + A D A+ G +I S GG DAI+ A+ G+L + +AGN
Sbjct: 103 SGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVAAAGND 158
Query: 273 G------PGLTASVA-PWLMSVAAST-TDRL 295
G P AS ++SVAA+ D L
Sbjct: 159 GTNNDKTPTYPASYDLDNIISVAATDSNDAL 189
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D+SAPG IL + D + Y +SGTSM+ PH AGVAA + S P S
Sbjct: 200 DVSAPGGGIL-------STTPDGD------YAYMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 542 SAIKSAIMTTA 552
S ++ A+ TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 34/186 (18%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
+ V V+DTGI F G +F T T
Sbjct: 2 KGITVAVLDTGIDAPHPDFD------------GRIIRFADF----------VNTVNGRTT 39
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP-GGCDSAGVL 220
D+ GHG+H A +G+ + G +G A P + KV G + ++
Sbjct: 40 PYDDNGHGTHVAGIIAGS---GRASNGKYKGVA----PGANLVGVKVLDDSGSGSESDII 92
Query: 221 GAFDDAIAD----GVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL 276
D + + + V+ +S+G + ED + G++ + +AGNSGPG
Sbjct: 93 AGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGP 152
Query: 277 TASVAP 282
+P
Sbjct: 153 GTITSP 158
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 47/176 (26%), Positives = 67/176 (38%), Gaps = 42/176 (23%)
Query: 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTA 162
+ V VIDTGI I+G +T +
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL------------------------NIVGGANFTGDDNNDY 36
Query: 163 RDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGC-DSAGV 219
+D GHG+H A A N V G A P + A KV G + +
Sbjct: 37 QDGNGHGTHVAGIIAALDNGV-------GVVGVA----PEADLYAVKVLNDDGSGTYSDI 85
Query: 220 LGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPG 275
+ + AI +G+D+I +S+GG S +AI A A G+L + +AGNSG G
Sbjct: 86 IAGIEWAIENGMDIINMSLGGPSDSPALREAIKK----AYAAGILVVAAAGNSGNG 137
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 34/78 (43%), Positives = 40/78 (51%), Gaps = 19/78 (24%)
Query: 462 VVVGFSSRGPNAIVP--EILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTS 519
V+ FSSRGP I KPDISAPGV+I +A Y SGTS
Sbjct: 186 VLADFSSRGP---STYGRI-KPDISAPGVNIRSAVP-------------GGGYGSSSGTS 228
Query: 520 MSCPHAAGVAAYVKSFHP 537
M+ PH AGVAA + S +P
Sbjct: 229 MAAPHVAGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 457 DFDAPVVVGFSSRGPNAI---VPEIL-KPDISAP-GVDILAAFSPLAQASIDSEDKRKPK 511
D SS P I PE+ KPD++AP GV+ ++D + P
Sbjct: 163 GSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVN----------GTVDGDGDGPPN 212
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
+ GTS + PHAAGVAA V S +P +P+ I+ A+ +TA M + A GSG
Sbjct: 213 F---FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG---YDNASGSGL 266
Query: 572 VNPVKAI 578
V+ +A+
Sbjct: 267 VDADRAV 273
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 45/202 (22%), Positives = 65/202 (32%), Gaps = 56/202 (27%)
Query: 106 VGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTAR-- 163
VGVID+GI F+ ++ A YY
Sbjct: 7 VGVIDSGIDLSHPEFAG------------------------RVSEASYYVAVNDAGYASN 42
Query: 164 -DEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSG-RIAAYKVCFPGGC--DSAGV 219
D + HG+H A + G GV + + + G A +
Sbjct: 43 GDGDSHGTHVAGVIAAA----------RDGGGMHGVAPDATLYSARASASAGSTFSDADI 92
Query: 220 LGAFDDAIADGVDVITISIGGD------------SAVDFSEDAISIGAFHAMAKGVLTLN 267
A+D A GV +I S GG+ SA ++ A A G L +
Sbjct: 93 AAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALAR-AANAGGLFVF 151
Query: 268 SAGNSG---PGLTASVAPWLMS 286
+AGN G P L A+ P+L
Sbjct: 152 AAGNDGQANPSLAAAALPYLEP 173
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 464 VGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCP 523
+G + + DI+APGVDI++A Y +SGTSM+ P
Sbjct: 196 LGRTGNFSAVANFSNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATP 242
Query: 524 HAAGVAA 530
H AGVAA
Sbjct: 243 HVAGVAA 249
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 35/228 (15%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNN--KIIGARYYTPAPY 159
IVGV DTG+ F D F N T KI+ RY + +
Sbjct: 7 KGQIVGVADTGLDTNHCFFYDPNF---------------NKTNLFHRKIV--RYDSLS-- 47
Query: 160 DTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGV 219
DT D +GHG+H A +G +G P ++ + G S+
Sbjct: 48 DTKDDVDGHGTHVAGIIAGK-----GNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPP 102
Query: 220 LGA--FDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT 277
F G + + S G ++ A + F +L + SAGN G +
Sbjct: 103 DLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGNDGS 162
Query: 278 ASVAPW-----LMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKG 320
++ +++V AS V G G++ + ++ SF+ +G
Sbjct: 163 NTIGSPATAKNVLTVGASNNPS--VSNGEGGLGQSDNSDTVASFSSRG 208
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 23/113 (20%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FS GP D++APG +I++ SGTS + P
Sbjct: 193 FSLPGP--------WVDLAAPGENIVSL------------SPGGDGLATTSGTSFAAPFV 232
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
+G AA V+S PD + + ++ I TA + + G G V+PV A+
Sbjct: 233 SGTAALVRSRFPDLTAAQVRRRIEATA---DHPARGGRDDYVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSC 522
FS+ G DI+APGV + + P Y +SGTSM+
Sbjct: 198 KASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGGG------NYEYLSGTSMAA 243
Query: 523 PHAAGVAAYVKSFHPDW-SPSAIKSAIMTT 551
PH +GVAA V S PD +P I+ + +
Sbjct: 244 PHVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 20/94 (21%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDIL-------AAFSPLAQASIDSEDKRKPKYNIISG 517
+S+ GP D+SAPG D S S Y + G
Sbjct: 205 SYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGG-----STYGFLQG 251
Query: 518 TSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 551
TSM+ PH AGVAA +KS +P +P+ I+S + +T
Sbjct: 252 TSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 57/218 (26%), Positives = 85/218 (38%), Gaps = 49/218 (22%)
Query: 85 WDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTC 144
W+ + + S + V V+DTG+ P P K G +F
Sbjct: 11 WNLDQIGAPKAWDITGGSGVTVAVVDTGVDPTH-----------PDLLKVKFVLGYDFVD 59
Query: 145 NNKIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGR 202
N+ A D+ GHG+H A A+ N GV G A P +
Sbjct: 60 ND-------------SDAMDDNGHGTHVAGIIAAATNNG-----TGVA-GVA----PKAK 96
Query: 203 IAAYKVCFPGGCDSAGVLGAFDDAI---AD-GVDVITISIGGDSAVDFSEDAISIGAFHA 258
I KV + +G L + I AD G VI +S+GG ++AI+ +A
Sbjct: 97 IMPVKVL---DANGSGSLADIANGIRYAADKGAKVINLSLGGGLGSTALQEAIN----YA 149
Query: 259 MAKGVLTLNSAGNSGPGLTASVA--PWLMSVAASTTDR 294
KGV+ + +AGN G + A P ++VAA+ D
Sbjct: 150 WNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 462 VVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMS 521
FSS GP A LKPD+ A G I + + D +GTS S
Sbjct: 185 NKASFSSIGPTA--DGRLKPDVMALGTGIY----------VINGDGN---ITYANGTSFS 229
Query: 522 CPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 552
CP AG+ A + HP+W+ IK AI+ +A
Sbjct: 230 CPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.5 bits (117), Expect = 5e-06
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 457 DFDAPVVVGFSSRGPNAIVPEIL------KPDISAPGVDILAAFSPLAQASIDSEDKRKP 510
+ AP V+ + + V DI+APGV+IL+ +++++
Sbjct: 300 SYPAPNVIAVGALDLSDTVASFSNDGSPTGVDIAAPGVNILS------LSAVNTLPGDGA 353
Query: 511 KYNIISGTSMSCPHAAGVAAYVKSFHP-DWSPSAIKSAIMTTA 552
Y +SGTSM+ PH +GVAA V S +P + +P+ +++ I+TTA
Sbjct: 354 DYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTA 396
|
Length = 508 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D+ APG I + +Y SGTSM+ P +GVAA + S++P+ +
Sbjct: 233 DVFAPGERIYSTTP-------------DNEYETDSGTSMAAPVVSGVAALIWSYYPNLTA 279
Query: 542 SAIKSAIMTTA 552
+K I+ +
Sbjct: 280 KEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
+S+ G D+ APGV I + D Y SGTS + P A
Sbjct: 169 YSNYGNYV--------DLVAPGVGI----WTTGTGRGSAGDYPGGGYGSFSGTSFASPVA 216
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTT 551
AGVAA + S +P+ +P+ ++ + +T
Sbjct: 217 AGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 47/156 (30%), Positives = 60/156 (38%), Gaps = 33/156 (21%)
Query: 155 TPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGC 214
TP PYD GHG+HT T GN+ G G G P R A + G
Sbjct: 45 TPLPYDDN----GHGTHTMGTMVGND---------GDGQQIGVAPGARWIACRALDRNGG 91
Query: 215 DSAGVLGAFDDAIA----DGV--------DVITISIGGDSAVDFS-EDAISIGAFHAMAK 261
+ A L +A G DVI S GG S + + A++ A
Sbjct: 92 NDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAAWR----AA 147
Query: 262 GVLTLNSAGNSGP---GLTASVAPWLMSVAASTTDR 294
G+ + +AGN GP L A A + S A TDR
Sbjct: 148 GIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR 183
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 49/188 (26%), Positives = 72/188 (38%), Gaps = 49/188 (26%)
Query: 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTA 162
+ V VID+GI P+ + + KN G
Sbjct: 1 KVTVAVIDSGIDPDHPDLKNS-----------ISSYSKNLVPKG---GYDGKEAGETGDI 46
Query: 163 RDEE---GHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSA-- 217
D GHG+ A + N G +G P I +Y+V G C SA
Sbjct: 47 NDIVDKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYRVF--GSCGSAES 92
Query: 218 -GVLGAFDDAIADGVDVITISIGG---------DSAVDFSE--DAISIGAFHAMAKGVLT 265
++ A DA DGVDVI +S+GG D V+++ AI+ +A +KG +
Sbjct: 93 SWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAIN----YAKSKGSIV 148
Query: 266 LNSAGNSG 273
+ +AGN G
Sbjct: 149 VAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 43/174 (24%), Positives = 63/174 (36%), Gaps = 55/174 (31%)
Query: 108 VIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167
V+DTGI F G A W G +F D D G
Sbjct: 31 VLDTGIRTTHVEFG----GRA--IW------GADFV--------------GGDPDSDCNG 64
Query: 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDS-AGVLGAFDDA 226
HG+H A T G YGV + + A KV G + +G++ +
Sbjct: 65 HGTHVAGTVGGKT------YGVAKKA--------NLVAVKVLDCNGSGTLSGIIAGLEWV 110
Query: 227 IADGVD-----VITISIGGD--SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG 273
D V +S+GG +A+D A++ A+ GV+ + +AGNS
Sbjct: 111 ANDATKRGKPAVANMSLGGGASTALD---AAVA----AAVNAGVVVVVAAGNSN 157
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSC 522
VV +SSRGP+ KPD++A G A L ++ +++ GTSM+
Sbjct: 221 VVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGGALDGNE---AFDLFGGTSMAT 275
Query: 523 PHAAGVAAYV-----KSFHPD-WSPSAIKSAIMTTA 552
P AG AA V + + P +++ +M+TA
Sbjct: 276 PMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 40/175 (22%), Positives = 60/175 (34%), Gaps = 51/175 (29%)
Query: 106 VGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165
VG+IDTGI + S ++ A PAP
Sbjct: 3 VGMIDTGIDTAHPALS-----------------AVVIA---RLFFAGPGAPAPSA----- 37
Query: 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRI-----AAYKVCFPGGCDSAGVL 220
HG+ AS G G R G+ G + G + +
Sbjct: 38 --HGTAVASLL------------AGAGAQRPGLLPGADLYGADVFGRAGGGEGASALALA 83
Query: 221 GAFDDAIADGVDVITISIGG-DSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP 274
A D GV V+ IS+ G +A+ A++ A A+G++ + +AGN GP
Sbjct: 84 RALDWLAEQGVRVVNISLAGPPNAL--LAAAVAA----AAARGMVLVAAAGNDGP 132
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 39/160 (24%)
Query: 161 TARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVL 220
+D GHG+H A T G +V YGV ARG + KV GG G+L
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDV-PGPRYGV----ARG---AEIALIGKVLGDGGGGDGGIL 92
Query: 221 GAFDDAIADGVDVITISIGGD------------------------SAVDFSEDAISIGAF 256
A+A+G DVI++S+G D A F + A
Sbjct: 93 AGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQ 152
Query: 257 HAMAKGVLTLNSAGN-------SGPGLTASVAPWLMSVAA 289
A+A+G L + +AGN P + P M VAA
Sbjct: 153 AALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA 192
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 467 SSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAA 526
SSRGP A L ISAPG A + + ++ +++GTSMS P+A
Sbjct: 333 SSRGPTA--DGALGVSISAPG----GAIASVPNWTL-------QGSQLMNGTSMSSPNAC 379
Query: 527 GVAAYV----KSFHPDWSPSAIKSAIMTTA 552
G A + K+ ++P +++ A+ TA
Sbjct: 380 GGIALLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPS 542
++APG +I + Y +SGTS + PH +G AA + P +
Sbjct: 208 LAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 543 AIKSAIMTTA 552
++ ++TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 319 KGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFK-NYPE----VRKAG 373
PLVY + C P + S VKGKIV+ + ++ E ++AG
Sbjct: 4 GTGTGPLVYVGN------GDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAG 57
Query: 374 AAGTVLLNNEFDKVSFVVS------LPAVAVSQD 401
AAG ++ NN+ + V +P V +S +
Sbjct: 58 AAGVIIYNNDTGGLGGTVGDPSDVTIPVVFISYE 91
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 726 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.79 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.7 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.92 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.79 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.68 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.5 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.38 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.31 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 97.91 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 97.81 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.71 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 97.7 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 97.61 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.58 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.54 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.51 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.44 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.39 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.38 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.24 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.19 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.16 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.14 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.03 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.29 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.67 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 93.48 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 93.35 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 92.84 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 92.26 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 91.99 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 91.76 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 91.45 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 89.38 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 84.52 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 83.91 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 82.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 81.81 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 81.27 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=435.58 Aligned_cols=285 Identities=58% Similarity=0.961 Sum_probs=243.6
Q ss_pred ecccccCCccccCCCccccc-----cCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCccc---CCcee
Q 041951 77 LQLHTTRSWDFMGLNLSITR-----KRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFT---CNNKI 148 (726)
Q Consensus 77 ~~~~~~~s~~~~g~~~~~~~-----~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~---~n~k~ 148 (726)
+++++++++++++++ .+|. ++++|+||+|||||||||++||+|.+.+..+.+..|.+.|..+..+. |++|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 468899999999999 6665 49999999999999999999999999888889999999999988875 99999
Q ss_pred EeeeecCCC-----------CCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCC-CCCh
Q 041951 149 IGARYYTPA-----------PYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPG-GCDS 216 (726)
Q Consensus 149 ig~~~~~~~-----------~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g~~~ 216 (726)
++.++|... +..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 999999432 1356678899999999999999776555566666777999999999999999884 4888
Q ss_pred HHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCc
Q 041951 217 AGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDR 294 (726)
Q Consensus 217 ~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~ 294 (726)
+++++||++|++++++|||||||.... ....+.+..++..+.++|++||+||||+|+... ++.+||+++||+++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST--- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc---
Confidence 999999999999999999999999832 456677888888899999999999999996655 88888999998631
Q ss_pred eeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCc
Q 041951 295 LFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGA 374 (726)
Q Consensus 295 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~ 374 (726)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEeccee
Q 041951 375 AGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEA 454 (726)
Q Consensus 375 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 454 (726)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh
Q 041951 455 VKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS 534 (726)
Q Consensus 455 ~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 534 (726)
+||||+|||.+|++++.... ..........|..++|||||||+|||++|||+|
T Consensus 236 ------------------------~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~ 288 (307)
T cd04852 236 ------------------------LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKS 288 (307)
T ss_pred ------------------------CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHH
Confidence 36799999999999886421 111122236799999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHcccc
Q 041951 535 FHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 535 ~~P~ls~~~ik~~L~~TA~ 553 (726)
++|+|++.+||++|++||+
T Consensus 289 ~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 289 AHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=442.10 Aligned_cols=290 Identities=18% Similarity=0.195 Sum_probs=212.0
Q ss_pred CCCccccc--cCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccc---cccCCCcccCCceeEeeeecCCCCCCCCC
Q 041951 89 GLNLSITR--KRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKG---ACNGGKNFTCNNKIIGARYYTPAPYDTAR 163 (726)
Q Consensus 89 g~~~~~~~--~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g---~~~~g~~f~~n~k~ig~~~~~~~~~~~~~ 163 (726)
+++ ++|+ .+.+|+||+|||||||||++||||.+. +...+....| ....+.+.. +. +.+++|.++ ...+.
T Consensus 302 ~~~-~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~n-i~~n~~el~GrdgiDdD~nG~v--dd-~~G~nfVd~-~~~P~ 375 (639)
T PTZ00262 302 RLD-ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDN-IDVNVKELHGRKGIDDDNNGNV--DD-EYGANFVNN-DGGPM 375 (639)
T ss_pred Cch-HHHHHhhccCCCCcEEEEEccCCCCCChhhhhh-cccccccccCccccccccCCcc--cc-cccccccCC-CCCCC
Confidence 444 5666 467899999999999999999999854 1111111111 111111110 11 233445322 24568
Q ss_pred CCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCC
Q 041951 164 DEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDS 242 (726)
Q Consensus 164 D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~ 242 (726)
|..||||||||||||... +..|+ .||||+|+|+++|+++..+ +..+++++||+||++.|++|||||||+..
T Consensus 376 D~~GHGTHVAGIIAA~gn---N~~Gi-----~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~ 447 (639)
T PTZ00262 376 DDNYHGTHVSGIISAIGN---NNIGI-----VGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDE 447 (639)
T ss_pred CCCCcchHHHHHHhcccc---CCCce-----eeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCC
Confidence 899999999999999753 22344 8999999999999998876 78899999999999999999999999772
Q ss_pred CCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC----------------CC----CCCceEEEecccCCceeeeEEEe
Q 041951 243 AVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----------------AS----VAPWLMSVAASTTDRLFVDKVAL 302 (726)
Q Consensus 243 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----------------~~----~~p~vitVga~~~~~~~~~~~~~ 302 (726)
....+..++..|.++|++||+||||+|.... |+ ..|++|+|||...+.
T Consensus 448 ----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-------- 515 (639)
T PTZ00262 448 ----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-------- 515 (639)
T ss_pred ----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC--------
Confidence 2346677888899999999999999986431 11 234556665542210
Q ss_pred CCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEecc
Q 041951 303 GNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNN 382 (726)
Q Consensus 303 ~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~ 382 (726)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCe
Q 041951 383 EFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPV 462 (726)
Q Consensus 383 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 462 (726)
.....
T Consensus 516 ---------------------------------------------------------------------------~~~~s 520 (639)
T PTZ00262 516 ---------------------------------------------------------------------------NNQYS 520 (639)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 00012
Q ss_pred eecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHH
Q 041951 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPS 542 (726)
Q Consensus 463 ~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~ 542 (726)
++.||++|. .++||+|||++|+++.+. +.|..++|||||||||||+||||++++|+|++.
T Consensus 521 ~s~~Snyg~-------~~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSA-------KYCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCC-------CcceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 345566652 134999999999999876 679999999999999999999999999999999
Q ss_pred HHHHHHHccccccCCCCCCCCCcccCC-CCCCccccCCCCcee
Q 041951 543 AIKSAIMTTAWAMNSSKNTEAEFAYGS-GHVNPVKAINPGLVY 584 (726)
Q Consensus 543 ~ik~~L~~TA~~~~~~~~~~~~~~~G~-G~in~~~Al~~~lv~ 584 (726)
+|+++|++||.+++.. +..+|| |+||+.+|++.++-+
T Consensus 581 qV~~iL~~TA~~l~~~-----~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL-----KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC-----CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999987654 233343 899999999976654
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=412.30 Aligned_cols=269 Identities=25% Similarity=0.251 Sum_probs=204.9
Q ss_pred CCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhcc
Q 041951 98 RSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTAS 177 (726)
Q Consensus 98 ~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaa 177 (726)
+++|+||+|||||||||.+||++.+-.... +.+...+..+ .....|..+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~--------------------l~~~~~~~~~-~~~~~d~~gHGT~vAgii- 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGD--------------------LPGNVNVLGD-LDGGSGGGDEGRAMLEII- 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCC--------------------CCcceeeccc-cCCCCCCCchHHHHHHHH-
Confidence 579999999999999999998654321111 1111111111 134567889999999999
Q ss_pred ccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHH
Q 041951 178 GNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFH 257 (726)
Q Consensus 178 g~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~ 257 (726)
.||||+|+|+.+|+. ...+++++||+||++.|++|||||||......+.+..+..++.+
T Consensus 59 -----------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~ 117 (275)
T cd05562 59 -----------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDE 117 (275)
T ss_pred -----------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHH
Confidence 477999999999874 35788999999999999999999999874333334567788888
Q ss_pred hhhC-CcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcc
Q 041951 258 AMAK-GVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISE 333 (726)
Q Consensus 258 a~~~-Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 333 (726)
+.++ |++||+||||+|.... |+..|++|+|||++...........
T Consensus 118 a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~------------------------------- 166 (275)
T cd05562 118 VVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDP------------------------------- 166 (275)
T ss_pred HHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccc-------------------------------
Confidence 8887 9999999999998654 8899999999997644211000000
Q ss_pred cccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcC
Q 041951 334 SCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKEST 413 (726)
Q Consensus 334 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 413 (726)
.
T Consensus 167 ------------~------------------------------------------------------------------- 167 (275)
T cd05562 167 ------------A------------------------------------------------------------------- 167 (275)
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred chhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCc-EEe
Q 041951 414 KYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVD-ILA 492 (726)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~-I~s 492 (726)
+ .......+.|+++||+. ++++||||+|||+. +.+
T Consensus 168 -------------------------------~-----------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~ 203 (275)
T cd05562 168 -------------------------------P-----------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTV 203 (275)
T ss_pred -------------------------------c-----------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccC
Confidence 0 00002245678899987 88999999999753 344
Q ss_pred ecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCC
Q 041951 493 AFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHV 572 (726)
Q Consensus 493 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~i 572 (726)
.... +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+. +..||||+|
T Consensus 204 ~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~---d~~~G~G~v 267 (275)
T cd05562 204 DGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPGY---DNASGSGLV 267 (275)
T ss_pred CCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCC---CCCcCcCcc
Confidence 3332 679999999999999999999999999999999999999999999875442 678999999
Q ss_pred CccccCC
Q 041951 573 NPVKAIN 579 (726)
Q Consensus 573 n~~~Al~ 579 (726)
|+.+|++
T Consensus 268 da~~Av~ 274 (275)
T cd05562 268 DADRAVA 274 (275)
T ss_pred cHHHHhh
Confidence 9999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-49 Score=406.44 Aligned_cols=241 Identities=25% Similarity=0.336 Sum_probs=198.5
Q ss_pred cccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchh
Q 041951 95 TRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTAS 174 (726)
Q Consensus 95 ~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAG 174 (726)
|+++++|+||+|||||+|||.+||+|.+.. ...+|..+ ....|..||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~-------------------------~~~~~~~~--~~~~d~~gHGT~VAG 53 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK-------------------------ERTNWTNE--KTLDDGLGHGTFVAG 53 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc-------------------------cccccCCC--CCCCCCCCcHHHHHH
Confidence 899999999999999999999999997320 01112111 245578899999999
Q ss_pred hccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHH
Q 041951 175 TASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISI 253 (726)
Q Consensus 175 iaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~ 253 (726)
||+|+.. ...||||+|+|+.+|++.+.+ ...+.++++++||++++++|||||||.+. +.+.++..
T Consensus 54 iIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~~~~ 119 (255)
T cd07479 54 VIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKPFVD 119 (255)
T ss_pred HHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcHHHH
Confidence 9998731 138999999999999998776 56778999999999999999999999872 34456666
Q ss_pred HHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEcc
Q 041951 254 GAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGK 329 (726)
Q Consensus 254 a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~ 329 (726)
++.++.++|++||+||||+|+... |...+++|+|||.+.+
T Consensus 120 ~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------------ 163 (255)
T cd07479 120 KVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------------------------ 163 (255)
T ss_pred HHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC------------------------------------
Confidence 777888999999999999997532 7778899999875321
Q ss_pred CCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHH
Q 041951 330 EISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISY 409 (726)
Q Consensus 330 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 409 (726)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCC----CCCCCccCceEe
Q 041951 410 KESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNA----IVPEILKPDISA 485 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~----~~~~~~KPDI~A 485 (726)
+.++.|||+|++. ...+++||||+|
T Consensus 164 ---------------------------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~a 192 (255)
T cd07479 164 ---------------------------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVT 192 (255)
T ss_pred ---------------------------------------------------CccccccCCCCCcccccCCCCCcCccEEe
Confidence 3468899999652 126789999999
Q ss_pred CCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCC----CCCHHHHHHHHHccccccC
Q 041951 486 PGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHP----DWSPSAIKSAIMTTAWAMN 556 (726)
Q Consensus 486 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~ls~~~ik~~L~~TA~~~~ 556 (726)
||.+|+++... +.|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 193 pG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 193 YGSGVYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cCCCeeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 99999987654 5688999999999999999999999998 7999999999999999875
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=428.46 Aligned_cols=398 Identities=22% Similarity=0.229 Sum_probs=248.0
Q ss_pred CCCCCcEEEEEeccCCCCCCCCCC-CCCCCCCccccccccCCCcccCCceeEeeeecC---------C-C--CCCCCCCC
Q 041951 99 SVESNLIVGVIDTGIWPESESFSD-EGFGPAPKKWKGACNGGKNFTCNNKIIGARYYT---------P-A--PYDTARDE 165 (726)
Q Consensus 99 ~~G~GVvVaVIDtGid~~Hp~f~d-~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~---------~-~--~~~~~~D~ 165 (726)
++|+||+|||||||||+.||+|++ +|.+++...|++....+..- ....+...+. . + +.....|.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~ 77 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRDE 77 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence 479999999999999999999985 46788899998877654321 1112221111 1 1 23455789
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-----------CChHHHHHHHHHHhhC-----
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-----------CDSAGVLGAFDDAIAD----- 229 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-----------~~~~~i~~ai~~A~~~----- 229 (726)
.||||||||||||+... ...+.||||+|+|+++|++...+ +...++++||+|+++.
T Consensus 78 ~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~ 149 (455)
T cd07478 78 NGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN 149 (455)
T ss_pred CCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence 99999999999998642 12338999999999999998765 4678999999998864
Q ss_pred CCcEEEEcccCCCCCCCcccHHHHHHHHhhhC-CcEEEEccCCCCCCCCCCCCCceEEEecccCCceeeeEEEeCCCeeE
Q 041951 230 GVDVITISIGGDSAVDFSEDAISIGAFHAMAK-GVLTLNSAGNSGPGLTASVAPWLMSVAASTTDRLFVDKVALGNGKAI 308 (726)
Q Consensus 230 g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 308 (726)
.++|||||||.+.+++...++++.+++.+..+ |++||+||||+|.... .....+... ...-...+.++.+...
T Consensus 150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~--h~~~~~~~~----~~~~~ie~~v~~~~~~ 223 (455)
T cd07478 150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQH--HHSGGIVPN----GETKTVELNVGEGEKG 223 (455)
T ss_pred CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCC--ceeeeeccC----CceEEEEEEECCCCcc
Confidence 47899999999877788888999998887766 9999999999997542 000000000 0001112222222221
Q ss_pred eeEEeccCCCCCceeeEEEccCCccccccc-------------CCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCce
Q 041951 309 SGYSINSFAMKGRRFPLVYGKEISESCQEL-------------SSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAA 375 (726)
Q Consensus 309 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~ 375 (726)
....++........+.++..+......... ....|.... .+....|.-.+.-+ ......|.+
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~----~~~~~~GiW 298 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIR----FKNIKPGIW 298 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEE----ccCCCccce
Confidence 111122111111111111111100000000 000000000 00111122111111 112334666
Q ss_pred EEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEE-ecce-
Q 041951 376 GTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEI-LKTE- 453 (726)
Q Consensus 376 g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~- 453 (726)
-+.+......+.....++|.-.+...+..++ .. ++..++ ....
T Consensus 299 ~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~----~~-------------------------------~~~~tit~Pa~~ 343 (455)
T cd07478 299 KIRLTGVSITDGRFDAWLPSRGLLSENTRFL----EP-------------------------------DPYTTLTIPGTA 343 (455)
T ss_pred EEEEEeccCCCceEEEEecCcCcCCCCCEee----cC-------------------------------CCCceEecCCCC
Confidence 6666665554445555566443332221111 00 222222 1111
Q ss_pred ----eec--CCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHH
Q 041951 454 ----AVK--DFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAG 527 (726)
Q Consensus 454 ----~~~--~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 527 (726)
.++ +...+.++.||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||
T Consensus 344 ~~vitVga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG 408 (455)
T cd07478 344 RSVITVGAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAG 408 (455)
T ss_pred CCcEEEEEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHH
Confidence 111 22345699999999998 899999999999999999885 679999999999999999
Q ss_pred HHHHHHhcC------CCCCHHHHHHHHHccccccCCCCCCCCCcccCCC
Q 041951 528 VAAYVKSFH------PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSG 570 (726)
Q Consensus 528 ~aALl~q~~------P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 570 (726)
++|||+|.+ |.|++++||++|++||+++....+| +..||||
T Consensus 409 ~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~~~p--n~~~GyG 455 (455)
T cd07478 409 ACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYP--NPEWGYG 455 (455)
T ss_pred HHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCCCCC--CCCCCCC
Confidence 999999865 6679999999999999998754443 6789998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=413.26 Aligned_cols=285 Identities=27% Similarity=0.281 Sum_probs=192.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccC
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNE 180 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~ 180 (726)
|+||+|||||||||++||||.+... ..|+. .|.+...+....++.++....+.|.+||||||||||||+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~------~~d~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~ 70 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKL------KFDYKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRG 70 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCccc------ccCcCCCccCCcCCCCCccCCCCCccccchhHHHHHhccC
Confidence 8999999999999999999974311 01110 1111112223333322222456789999999999999986
Q ss_pred CCCCcccccc-ccceeeecCCcEEEEEEeeCCCC-CChHHHHH-------HHHH--HhhCCCcEEEEcccCCCCCC----
Q 041951 181 VKDASFYGVG-QGTARGGVPSGRIAAYKVCFPGG-CDSAGVLG-------AFDD--AIADGVDVITISIGGDSAVD---- 245 (726)
Q Consensus 181 ~~~~~~~G~~-~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~-------ai~~--A~~~g~dVInlSlG~~~~~~---- 245 (726)
..+.+.+++. ...+.||||+|+|+.+|++...+ .....+.. +++| +.+++++|||||||......
T Consensus 71 ~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~ 150 (311)
T cd07497 71 KMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYA 150 (311)
T ss_pred cccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccc
Confidence 4332222211 22349999999999999986543 32233333 3344 34679999999999863111
Q ss_pred CcccHHHHHHHHh-hhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCC
Q 041951 246 FSEDAISIGAFHA-MAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKG 320 (726)
Q Consensus 246 ~~~~~~~~a~~~a-~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 320 (726)
...+..+..++.+ .++|+++|+||||+|+... |+.++++|+|||++.....+.
T Consensus 151 ~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~---------------------- 208 (311)
T cd07497 151 PGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF---------------------- 208 (311)
T ss_pred cCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch----------------------
Confidence 1122333333332 3899999999999997643 888999999999754310000
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeeh
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQ 400 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~ 400 (726)
+++.+
T Consensus 209 --~~~~~------------------------------------------------------------------------- 213 (311)
T cd07497 209 --YLFGY------------------------------------------------------------------------- 213 (311)
T ss_pred --hhhcc-------------------------------------------------------------------------
Confidence 00000
Q ss_pred hhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCcc
Q 041951 401 DSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILK 480 (726)
Q Consensus 401 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 480 (726)
. ....+.++.||||||+. ++++|
T Consensus 214 -------------------------------------------~------------~~~~~~~~~fSs~Gp~~--~g~~k 236 (311)
T cd07497 214 -------------------------------------------L------------PGGSGDVVSWSSRGPSI--AGDPK 236 (311)
T ss_pred -------------------------------------------c------------cCCCCCccccccCCCCc--ccCCC
Confidence 0 01135689999999998 89999
Q ss_pred CceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCC------CCCHHHHHHHHHccc
Q 041951 481 PDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHP------DWSPSAIKSAIMTTA 552 (726)
Q Consensus 481 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~ls~~~ik~~L~~TA 552 (726)
|||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 237 Pdv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 237 PDLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999999999876432100 011124799999999999999999999999876 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-48 Score=419.77 Aligned_cols=306 Identities=30% Similarity=0.378 Sum_probs=233.9
Q ss_pred cccccCC-CCCCcEEEEEeccCCCCCCCCCCCCCCCCCc-----cccccccCCCcccCCceeEeeeecCCC-CC-CCCCC
Q 041951 93 SITRKRS-VESNLIVGVIDTGIWPESESFSDEGFGPAPK-----KWKGACNGGKNFTCNNKIIGARYYTPA-PY-DTARD 164 (726)
Q Consensus 93 ~~~~~~~-~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~-----~w~g~~~~g~~f~~n~k~ig~~~~~~~-~~-~~~~D 164 (726)
.+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+.....+++++..++|.++ +. ....|
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788877 9999999999999999999998654332211 233344445555678889988888433 22 22457
Q ss_pred CcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCC--CC-CChHHHHHHHHHHhhCCCcEEEEcccCC
Q 041951 165 EEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP--GG-CDSAGVLGAFDDAIADGVDVITISIGGD 241 (726)
Q Consensus 165 ~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~--~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~ 241 (726)
..+|||||||||+|......+ ...+.|+||+|+|+.+|+++. .+ .....+++|+++|++.|++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 899999999999998643211 223499999999999999973 33 7788899999999999999999999998
Q ss_pred CCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC------------------CCCCCceEEEecccCCceeeeEEEeC
Q 041951 242 SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT------------------ASVAPWLMSVAASTTDRLFVDKVALG 303 (726)
Q Consensus 242 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~------------------~~~~p~vitVga~~~~~~~~~~~~~~ 303 (726)
.........+..++.++.++|++||+||||+|.... |...+++|+||+....
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~---------- 225 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK---------- 225 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc----------
Confidence 544355667778888899999999999999986543 2233445555443200
Q ss_pred CCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccC
Q 041951 304 NGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNE 383 (726)
Q Consensus 304 ~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~ 383 (726)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCee
Q 041951 384 FDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVV 463 (726)
Q Consensus 384 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 463 (726)
......+.+
T Consensus 226 -----------------------------------------------------------------------~~~~~~~~~ 234 (346)
T cd07475 226 -----------------------------------------------------------------------VPNPNGGQM 234 (346)
T ss_pred -----------------------------------------------------------------------cCCCCCCcc
Confidence 001223567
Q ss_pred ecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhc----CCCC
Q 041951 464 VGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSF----HPDW 539 (726)
Q Consensus 464 a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~l 539 (726)
+.||+|||+. .+++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|
T Consensus 235 ~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l 299 (346)
T cd07475 235 SGFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKL 299 (346)
T ss_pred CCCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 8999999998 899999999999999988765 57899999999999999999999997 6899
Q ss_pred CHHH----HHHHHHccccccCCC---CCCCCCcccCCCCCCccccCC
Q 041951 540 SPSA----IKSAIMTTAWAMNSS---KNTEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 540 s~~~----ik~~L~~TA~~~~~~---~~~~~~~~~G~G~in~~~Al~ 579 (726)
++.+ ||++|++||.+.... +....+..+|+|+||+.+||+
T Consensus 300 ~~~~~~~~ik~~l~~ta~~~~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 300 SGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CHHHHHHHHHHHHHhcCCcccccCCCCccCCccccCcchhcHHHhhC
Confidence 9877 788999999953322 112246688999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-47 Score=404.82 Aligned_cols=278 Identities=33% Similarity=0.484 Sum_probs=224.7
Q ss_pred CCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCC---------CCC
Q 041951 89 GLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP---------APY 159 (726)
Q Consensus 89 g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~---------~~~ 159 (726)
|++ .+|+.+++|+||+|||||+|||++||+|.+. +.+ +.++.+.+++.+ .+.
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~-~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~ 61 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGC-FGP-----------------GCKVAGGYDFVGDDYDGTNPPVPD 61 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcC-CCC-----------------CceeccccccCCcccccccCCCCC
Confidence 355 8999999999999999999999999999854 111 011222222211 123
Q ss_pred CCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcc
Q 041951 160 DTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISI 238 (726)
Q Consensus 160 ~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSl 238 (726)
..+.|..+|||||||||+|.... .|+ .||||+|+|+.+|++...+ .....+++++++|++++++|||+||
T Consensus 62 ~~~~d~~gHGT~vAgiia~~~~~----~~~-----~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~ 132 (312)
T cd07489 62 DDPMDCQGHGTHVAGIIAANPNA----YGF-----TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASL 132 (312)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCC----Cce-----EEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCC
Confidence 45667899999999999998532 344 9999999999999998666 6777899999999999999999999
Q ss_pred cCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEe
Q 041951 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSI 313 (726)
Q Consensus 239 G~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (726)
|... .+....+...+.++.++|+++|+||||+|.... |+..|++|+||+.+
T Consensus 133 g~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------------------- 188 (312)
T cd07489 133 GGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------------------- 188 (312)
T ss_pred CcCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------------------
Confidence 9873 344577777888889999999999999987642 66677888887531
Q ss_pred ccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeec
Q 041951 314 NSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSL 393 (726)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~ 393 (726)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCC
Q 041951 394 PAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNA 473 (726)
Q Consensus 394 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~ 473 (726)
+.||++||+.
T Consensus 189 ----------------------------------------------------------------------~~~s~~g~~~ 198 (312)
T cd07489 189 ----------------------------------------------------------------------SYFSSWGPTN 198 (312)
T ss_pred ----------------------------------------------------------------------CCccCCCCCC
Confidence 4578999988
Q ss_pred CCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcC-CCCCHHHHHHHHHccc
Q 041951 474 IVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH-PDWSPSAIKSAIMTTA 552 (726)
Q Consensus 474 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~ls~~~ik~~L~~TA 552 (726)
+...||||+|||++++++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||
T Consensus 199 --~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta 265 (312)
T cd07489 199 --ELYLKPDVAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTA 265 (312)
T ss_pred --CCCcCccEEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 78899999999999999887632 358999999999999999999999999 9999999999999999
Q ss_pred cccCCCCCCC------CCcccCCCCCCccccCCCC
Q 041951 553 WAMNSSKNTE------AEFAYGSGHVNPVKAINPG 581 (726)
Q Consensus 553 ~~~~~~~~~~------~~~~~G~G~in~~~Al~~~ 581 (726)
.++...+... ....+|||+||+.+|++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 266 KPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred ccccccCCCccccCCCCHhhcCcceeeHHHHhcCC
Confidence 9876543221 2368999999999999953
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=386.60 Aligned_cols=247 Identities=23% Similarity=0.288 Sum_probs=202.6
Q ss_pred ccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccch
Q 041951 94 ITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTA 173 (726)
Q Consensus 94 ~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVA 173 (726)
+|..+++|+||+|||||+|||++||+|.+....+. ..+.. ......|..+||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-----------------------~~~~~-~~~~~~~~~gHGT~VA 57 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-----------------------FTYAA-AACQDGGASAHGTHVA 57 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-----------------------cCccc-cCCCCCCCCCcHHHHH
Confidence 79999999999999999999999999986422111 00100 0134556789999999
Q ss_pred hhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC--CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHH
Q 041951 174 STASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG--CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAI 251 (726)
Q Consensus 174 Giaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~ 251 (726)
|||+|+.. ..+.||||+|+|+.+|++...+ ++..++++||+||+++|++|||||||...........+
T Consensus 58 gii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l 127 (267)
T cd07476 58 SLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPIL 127 (267)
T ss_pred HHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHH
Confidence 99998742 1238999999999999987654 44678999999999999999999999864333445677
Q ss_pred HHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEcc
Q 041951 252 SIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGK 329 (726)
Q Consensus 252 ~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~ 329 (726)
..++..+.++|+++|+||||+|.... |+..|++|+||+++..
T Consensus 128 ~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------------ 171 (267)
T cd07476 128 ANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------------------------------ 171 (267)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------------------------------
Confidence 88888899999999999999997655 8889999999985321
Q ss_pred CCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHH
Q 041951 330 EISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISY 409 (726)
Q Consensus 330 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 409 (726)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCc
Q 041951 410 KESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVD 489 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 489 (726)
+.++.||++|+.. .||||+|||.+
T Consensus 172 ---------------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~ 195 (267)
T cd07476 172 ---------------------------------------------------GLPLKFSNWGADY-----RKKGILAPGEN 195 (267)
T ss_pred ---------------------------------------------------CCeeeecCCCCCC-----CCceEEecCCC
Confidence 2356789999764 38899999999
Q ss_pred EEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCC----CCHHHHHHHHHccccccCCCC
Q 041951 490 ILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD----WSPSAIKSAIMTTAWAMNSSK 559 (726)
Q Consensus 490 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----ls~~~ik~~L~~TA~~~~~~~ 559 (726)
|+++.+. +.|..++|||||||||||++|||++.+|. +++++||++|++||+++...+
T Consensus 196 i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 196 ILGAALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred ceeecCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 9998765 57999999999999999999999999887 999999999999999997653
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=387.85 Aligned_cols=274 Identities=37% Similarity=0.561 Sum_probs=215.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCC--------------CCCCCCCc
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAP--------------YDTARDEE 166 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~--------------~~~~~D~~ 166 (726)
|+||+|||||+|||++||+|.+... .+.++...++|..+. .....|..
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDAT 62 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------CCCceeeeeECccCCCCcccccccccccccCCCCCCC
Confidence 8999999999999999999985421 123444444442210 01234588
Q ss_pred CCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCC
Q 041951 167 GHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVD 245 (726)
Q Consensus 167 gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~ 245 (726)
+|||||||+|+|...+ .. .+.|+||+|+|+.+|+++..+ +...++++||+++++++++|||||||... .
T Consensus 63 ~HGT~vAgiiag~~~n---~~-----~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~ 132 (295)
T cd07474 63 GHGTHVAGIIAGNGVN---VG-----TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N 132 (295)
T ss_pred CcHHHHHHHHhcCCCc---cC-----ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C
Confidence 9999999999988532 22 238999999999999998544 78889999999999999999999999873 2
Q ss_pred CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCc
Q 041951 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGR 321 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 321 (726)
...+.+..++.++.++|+++|+||||+|.... |+..+++|+||++.....
T Consensus 133 ~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------- 186 (295)
T cd07474 133 GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------- 186 (295)
T ss_pred CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------
Confidence 24567788888899999999999999987654 777899999998641100
Q ss_pred eeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehh
Q 041951 322 RFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQD 401 (726)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~ 401 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeeccc-CCCCCCCCCCCcc
Q 041951 402 SLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFS-SRGPNAIVPEILK 480 (726)
Q Consensus 402 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fS-S~Gp~~~~~~~~K 480 (726)
........|+ +.|++. ...+|
T Consensus 187 --------------------------------------------------------~~~~~~~~~~s~~~~~~--~~~~k 208 (295)
T cd07474 187 --------------------------------------------------------AEADTVGPSSSRGPPTS--DSAIK 208 (295)
T ss_pred --------------------------------------------------------CCCCceeccCCCCCCCC--CCCcC
Confidence 0001233444 445555 78899
Q ss_pred CceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCC
Q 041951 481 PDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKN 560 (726)
Q Consensus 481 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~ 560 (726)
|||+|||++|+++.... ...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+.
T Consensus 209 pdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~ 277 (295)
T cd07474 209 PDIVAPGVDIMSTAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG 277 (295)
T ss_pred CCEECCcCceEeeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC
Confidence 99999999999988753 1578999999999999999999999999999999999999999999877544
Q ss_pred CC-CCcccCCCCCCcccc
Q 041951 561 TE-AEFAYGSGHVNPVKA 577 (726)
Q Consensus 561 ~~-~~~~~G~G~in~~~A 577 (726)
.. .+..+|+|+||+.+|
T Consensus 278 ~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 278 VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CcCChhccCcceeccccC
Confidence 32 246899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=377.66 Aligned_cols=232 Identities=26% Similarity=0.417 Sum_probs=192.1
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCC
Q 041951 104 LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKD 183 (726)
Q Consensus 104 VvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~ 183 (726)
|+|||||||||.+||+|.+. ++..+++.. ....|..+|||||||||+|....
T Consensus 1 V~VavIDsGvd~~hp~l~~~------------------------~~~~~~~~~---~~~~~~~~HGT~vAgiia~~~~~- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV------------------------VIARLFFAG---PGAPAPSAHGTAVASLLAGAGAQ- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccC------------------------ccccccCCC---CCCCCCCCCHHHHHHHHhCCCCC-
Confidence 78999999999999999743 111111111 13556889999999999988421
Q ss_pred CccccccccceeeecCCcEEEEEEeeCCCC----CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhh
Q 041951 184 ASFYGVGQGTARGGVPSGRIAAYKVCFPGG----CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAM 259 (726)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g----~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~ 259 (726)
. .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||+.. ...+..++.++.
T Consensus 53 ---------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-----~~~l~~ai~~a~ 117 (239)
T cd05561 53 ---------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-----NALLAAAVAAAA 117 (239)
T ss_pred ---------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CHHHHHHHHHHH
Confidence 1 6999999999999988642 67788999999999999999999999762 346777788899
Q ss_pred hCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCccccc
Q 041951 260 AKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQ 336 (726)
Q Consensus 260 ~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (726)
++|+++|+||||+|.... |+..+++|+|++++.+
T Consensus 118 ~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------------------------- 154 (239)
T cd05561 118 ARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------------------------- 154 (239)
T ss_pred HCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-------------------------------------------
Confidence 999999999999997643 8888999999875321
Q ss_pred ccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchh
Q 041951 337 ELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYI 416 (726)
Q Consensus 337 ~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 416 (726)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCC
Q 041951 417 FYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSP 496 (726)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 496 (726)
+.++.||++|+.. ||+|||.+|+++.+.
T Consensus 155 --------------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~ 182 (239)
T cd05561 155 --------------------------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG 182 (239)
T ss_pred --------------------------------------------CCccccCCCCCcc--------eEEccccceecccCC
Confidence 3457899999876 999999999987654
Q ss_pred CccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCC
Q 041951 497 LAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSG 570 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 570 (726)
+.|..++|||||||||||++|||+|++| +++++||++|++||+++...+. +..||||
T Consensus 183 -------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~~---d~~~G~G 239 (239)
T cd05561 183 -------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPGR---DPVFGYG 239 (239)
T ss_pred -------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCCc---CCCcCCC
Confidence 6799999999999999999999999999 9999999999999999876653 6789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=384.31 Aligned_cols=258 Identities=24% Similarity=0.374 Sum_probs=186.2
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCC-CCCccccccccCCCccc------------CCceeEeeeecC-------CCCCCC
Q 041951 102 SNLIVGVIDTGIWPESESFSDEGFG-PAPKKWKGACNGGKNFT------------CNNKIIGARYYT-------PAPYDT 161 (726)
Q Consensus 102 ~GVvVaVIDtGid~~Hp~f~d~g~~-~~~~~w~g~~~~g~~f~------------~n~k~ig~~~~~-------~~~~~~ 161 (726)
|+|+|||||||||++||+|++.-.. +.....++..+.+.+|. ..+++++...+. .++...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 6899999999999999999854110 00111123333332221 111111111110 011233
Q ss_pred CCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCC
Q 041951 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGD 241 (726)
Q Consensus 162 ~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~ 241 (726)
+.+..+|||||||||+|... +..|+ .||||+|+|+.+|++........++++||+||++.|++|||||||..
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~---n~~g~-----~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRD---NGIGI-----DGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCC---CCCce-----EEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 44688999999999998853 22344 89999999999999865446778899999999999999999999976
Q ss_pred CCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CC--------CCCceEEEecccCCceeeeEEEeCCCeeE
Q 041951 242 SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----AS--------VAPWLMSVAASTTDRLFVDKVALGNGKAI 308 (726)
Q Consensus 242 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~--------~~p~vitVga~~~~~~~~~~~~~~~g~~~ 308 (726)
. ......+..++..+.++|+++|+||||+|.... |. ..+++|+||++...
T Consensus 153 ~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~--------------- 215 (291)
T cd07483 153 F--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK--------------- 215 (291)
T ss_pred C--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc---------------
Confidence 2 223345677778888999999999999986542 11 12345555543211
Q ss_pred eeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccc
Q 041951 309 SGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVS 388 (726)
Q Consensus 309 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~ 388 (726)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccC
Q 041951 389 FVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSS 468 (726)
Q Consensus 389 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS 468 (726)
.....++.||+
T Consensus 216 ---------------------------------------------------------------------~~~~~~~~~Sn 226 (291)
T cd07483 216 ---------------------------------------------------------------------YENNLVANFSN 226 (291)
T ss_pred ---------------------------------------------------------------------CCcccccccCC
Confidence 00124688999
Q ss_pred CCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 041951 469 RGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAI 548 (726)
Q Consensus 469 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L 548 (726)
+|+. +|||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|
T Consensus 227 ~G~~-------~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L 286 (291)
T cd07483 227 YGKK-------NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQII 286 (291)
T ss_pred CCCC-------ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9974 45999999999998765 679999999999999999999999999999999999999
Q ss_pred Hcccc
Q 041951 549 MTTAW 553 (726)
Q Consensus 549 ~~TA~ 553 (726)
++||.
T Consensus 287 ~~ta~ 291 (291)
T cd07483 287 LESGV 291 (291)
T ss_pred HHhCC
Confidence 99984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=373.64 Aligned_cols=242 Identities=30% Similarity=0.382 Sum_probs=195.1
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVK 182 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~ 182 (726)
||+|||||||||++||+|..... ..+.++.+.++|..+......|..+|||||||||+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~HGT~vagiia~~~~- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------FKNLRILGEYDFVDNSNNTNYTDDDHGTAVLSTMAGYTP- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------ccCCceeeeecCccCCCCCCCCCCCchhhhheeeeeCCC-
Confidence 79999999999999999952210 013457777777443222236788999999999998742
Q ss_pred CCccccccccceeeecCCcEEEEEEeeCCCC---CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCC-----------cc
Q 041951 183 DASFYGVGQGTARGGVPSGRIAAYKVCFPGG---CDSAGVLGAFDDAIADGVDVITISIGGDSAVDF-----------SE 248 (726)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~-----------~~ 248 (726)
+...||||+|+|+.+|+..... .....+++|+++|.+.+++|||||||....... ..
T Consensus 63 ---------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~ 133 (261)
T cd07493 63 ---------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKT 133 (261)
T ss_pred ---------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccc
Confidence 2348999999999999865432 345678999999999999999999998732111 12
Q ss_pred cHHHHHHHHhhhCCcEEEEccCCCCCCC---C--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCcee
Q 041951 249 DAISIGAFHAMAKGVLTLNSAGNSGPGL---T--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRF 323 (726)
Q Consensus 249 ~~~~~a~~~a~~~Gv~vV~AAGN~g~~~---~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 323 (726)
..+..++..+.++|+++|+||||+|... . |+..+++|+|||...+
T Consensus 134 ~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 183 (261)
T cd07493 134 SFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------------------------ 183 (261)
T ss_pred hHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC------------------------------
Confidence 3567778888999999999999999874 2 8888999999985321
Q ss_pred eEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhH
Q 041951 324 PLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSL 403 (726)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g 403 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCce
Q 041951 404 SSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDI 483 (726)
Q Consensus 404 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI 483 (726)
+.++.||++||+. ++++||||
T Consensus 184 ---------------------------------------------------------~~~~~~S~~G~~~--~~~~~pdi 204 (261)
T cd07493 184 ---------------------------------------------------------GNKASFSSIGPTA--DGRLKPDV 204 (261)
T ss_pred ---------------------------------------------------------CCCCccCCcCCCC--CCCcCCce
Confidence 2457899999987 89999999
Q ss_pred EeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 484 SAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 484 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
+|||.++++.... +.|..++|||||||+|||++|||++++|+|++.|||++|++||+
T Consensus 205 ~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 205 MALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999985433 57899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=383.77 Aligned_cols=218 Identities=26% Similarity=0.326 Sum_probs=164.5
Q ss_pred CCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC---CChHHHHHHHHHHhhCCCcEEEEccc
Q 041951 163 RDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG---CDSAGVLGAFDDAIADGVDVITISIG 239 (726)
Q Consensus 163 ~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~A~~~g~dVInlSlG 239 (726)
.|+.+|||||||||+|+... ...+.|+||+|+|+.+|+++... +....+++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 46789999999999998532 12348999999999999986532 23457999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHH-hhhCCcEEEEccCCCCCCCC----CC-CCCceEEEecccCCceeeeEEEeCCCeeEeeEEe
Q 041951 240 GDSAVDFSEDAISIGAFH-AMAKGVLTLNSAGNSGPGLT----AS-VAPWLMSVAASTTDRLFVDKVALGNGKAISGYSI 313 (726)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~~----~~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (726)
.....+. ...+...+.+ +.++|+++|+||||+|+... |+ .++++|+|||+.....+...
T Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 254 EATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred cCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 8732221 1233344444 44789999999999998655 43 57899999986432100000
Q ss_pred ccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeec
Q 041951 314 NSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSL 393 (726)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~ 393 (726)
|.+
T Consensus 319 ---------y~~-------------------------------------------------------------------- 321 (412)
T cd04857 319 ---------YSL-------------------------------------------------------------------- 321 (412)
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 000
Q ss_pred CEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCC
Q 041951 394 PAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNA 473 (726)
Q Consensus 394 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~ 473 (726)
.....+.++.||||||+.
T Consensus 322 --------------------------------------------------------------~~~~~~~~~~fSSrGP~~ 339 (412)
T cd04857 322 --------------------------------------------------------------REKLPGNQYTWSSRGPTA 339 (412)
T ss_pred --------------------------------------------------------------ccccCCccccccccCCcc
Confidence 001125579999999998
Q ss_pred CCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----cCCCCCHHHHHHHHH
Q 041951 474 IVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIM 549 (726)
Q Consensus 474 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~ 549 (726)
++.+||||+|||+.|.+.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|+
T Consensus 340 --dG~~~pdI~APG~~I~s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~ 406 (412)
T cd04857 340 --DGALGVSISAPGGAIASVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALE 406 (412)
T ss_pred --cCCcCceEEeCCCcEEEcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHH
Confidence 9999999999999998753221 15689999999999999999999975 568999999999999
Q ss_pred cccccc
Q 041951 550 TTAWAM 555 (726)
Q Consensus 550 ~TA~~~ 555 (726)
+||+++
T Consensus 407 ~TA~~~ 412 (412)
T cd04857 407 NTAKKL 412 (412)
T ss_pred HhCccC
Confidence 999874
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=372.27 Aligned_cols=244 Identities=32% Similarity=0.445 Sum_probs=194.0
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecC-CCCCCCCCCCcCCcccchhhcccc
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYT-PAPYDTARDEEGHGSHTASTASGN 179 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~-~~~~~~~~D~~gHGThVAGiaag~ 179 (726)
|+||+|||||+|||++||+|.+. |++......... ..++. ......+.|..+|||||||||+|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~~~~~-------~~~~d~~~~~~~~~d~~~HGT~vagii~g~ 65 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGSADHD-------YNWFDPVGNTPLPYDDNGHGTHTMGTMVGN 65 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCCcccc-------cccccCCCCCCCCCCCCCchhhhhhheeec
Confidence 89999999999999999999864 111110000000 00011 111345667889999999999987
Q ss_pred CCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh------------CCCcEEEEcccCCCCCCCc
Q 041951 180 EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA------------DGVDVITISIGGDSAVDFS 247 (726)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~------------~g~dVInlSlG~~~~~~~~ 247 (726)
... +...||||+|+|+.+|++...++...+++++++++++ .+++|||||||.... .
T Consensus 66 ~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~---~ 133 (264)
T cd07481 66 DGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG---D 133 (264)
T ss_pred CCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC---C
Confidence 421 1128999999999999998877888899999999875 789999999998832 3
Q ss_pred ccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 248 EDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 248 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
...+..++..+.++|++||+||||++.... |+..|++|+||+.+.+
T Consensus 134 ~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------- 184 (264)
T cd07481 134 NEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------------------------- 184 (264)
T ss_pred chHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----------------------------
Confidence 345566667788899999999999986543 6778899999875322
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+.++.||++||.. .+++|||
T Consensus 185 ----------------------------------------------------------~~~~~~S~~g~~~--~~~~~~d 204 (264)
T cd07481 185 ----------------------------------------------------------DVLADFSSRGPST--YGRIKPD 204 (264)
T ss_pred ----------------------------------------------------------CCCccccCCCCCC--CCCcCce
Confidence 3467899999988 7999999
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCC--CCHHHHHHHHHcccc
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD--WSPSAIKSAIMTTAW 553 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--ls~~~ik~~L~~TA~ 553 (726)
|+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||.+|++||+
T Consensus 205 v~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 205 ISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999999998876 57899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=366.67 Aligned_cols=253 Identities=27% Similarity=0.434 Sum_probs=204.3
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCC--CCCCCCCCCcCCcccchhhccc
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP--APYDTARDEEGHGSHTASTASG 178 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~--~~~~~~~D~~gHGThVAGiaag 178 (726)
|+||+|+|||+|||++||+|.+.... ...+.. .......|..+|||||||||+|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag 56 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR------------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAG 56 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc------------------------cccccccccCCCCCCCCCCchHHHHHHHhc
Confidence 89999999999999999999864211 011100 1234566788999999999999
Q ss_pred cCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhC----CCcEEEEcccCCCCCCCcccHHHH
Q 041951 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIAD----GVDVITISIGGDSAVDFSEDAISI 253 (726)
Q Consensus 179 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~----g~dVInlSlG~~~~~~~~~~~~~~ 253 (726)
..... .+...|+||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.........+.+..
T Consensus 57 ~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~ 129 (264)
T cd07487 57 SGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQ 129 (264)
T ss_pred CCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHH
Confidence 85321 22349999999999999998776 6778899999999998 999999999988544556788888
Q ss_pred HHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEcc
Q 041951 254 GAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGK 329 (726)
Q Consensus 254 a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~ 329 (726)
++.++.++|++||+||||++.... |+..+++|+||+...+..
T Consensus 130 ~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------------------- 175 (264)
T cd07487 130 AVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------------------- 175 (264)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------------------
Confidence 999999999999999999998764 778899999998654310
Q ss_pred CCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHH
Q 041951 330 EISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISY 409 (726)
Q Consensus 330 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 409 (726)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCc
Q 041951 410 KESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVD 489 (726)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 489 (726)
....++.||++||+. ++++||||+|||++
T Consensus 176 -------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~ 204 (264)
T cd07487 176 -------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGEN 204 (264)
T ss_pred -------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccc
Confidence 002368899999998 89999999999999
Q ss_pred EEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 490 ILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 490 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
|++..+.... ......+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 205 i~~~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 205 IVSCRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eEeccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9997654210 01122367899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=365.00 Aligned_cols=258 Identities=26% Similarity=0.336 Sum_probs=197.7
Q ss_pred cccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeec---CCCCCCCCCCCcCCc
Q 041951 93 SITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY---TPAPYDTARDEEGHG 169 (726)
Q Consensus 93 ~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~---~~~~~~~~~D~~gHG 169 (726)
.+|..+++|+||+|||||||||++||+|.+..... +... ....+.+ .++......|..+||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~gHG 64 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-----------GYDP-----AVNGYNFVPNVGDIDNDVSVGGGHG 64 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-----------Cccc-----ccCCcccccccCCcCCCCCCCCCCH
Confidence 47999999999999999999999999999651110 0000 0001111 111123456788999
Q ss_pred ccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcc
Q 041951 170 SHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSE 248 (726)
Q Consensus 170 ThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~ 248 (726)
|||||||+|+.......-|+ ..+.|+||+|+|+.+|++...+ .....+++||++|++.|++|||||||... ...+.
T Consensus 65 T~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~~ 141 (273)
T cd07485 65 THVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIYS 141 (273)
T ss_pred HHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-ccccC
Confidence 99999999875322111111 1236799999999999998755 77788999999999999999999999883 23344
Q ss_pred cHHHHHHHHhhhC-------CcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCC
Q 041951 249 DAISIGAFHAMAK-------GVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMK 319 (726)
Q Consensus 249 ~~~~~a~~~a~~~-------Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 319 (726)
..+..++..+.++ |+++|+||||++.... |+..|++|+||+++.+
T Consensus 142 ~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~-------------------------- 195 (273)
T cd07485 142 PLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN-------------------------- 195 (273)
T ss_pred HHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC--------------------------
Confidence 5666777777777 9999999999998766 7888999999985422
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEee
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVS 399 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~ 399 (726)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCc
Q 041951 400 QDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEIL 479 (726)
Q Consensus 400 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 479 (726)
+.++.||++|+..
T Consensus 196 -------------------------------------------------------------~~~~~~S~~g~~~------ 208 (273)
T cd07485 196 -------------------------------------------------------------DNKASFSNYGRWV------ 208 (273)
T ss_pred -------------------------------------------------------------CCcCccccCCCce------
Confidence 3457899999977
Q ss_pred cCceEeCCC-cEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCC-CCHHHHHHHHHcc
Q 041951 480 KPDISAPGV-DILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD-WSPSAIKSAIMTT 551 (726)
Q Consensus 480 KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-ls~~~ik~~L~~T 551 (726)
||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+|++|+ |+++|||++|++|
T Consensus 209 --~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 --DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred --EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 88887764311 11257899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=366.89 Aligned_cols=160 Identities=24% Similarity=0.357 Sum_probs=124.5
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
+.++++ .+|+++++|+||+||||||||+..|| |...++.. ...+.........|.
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~~-----------------------~~~~~~~~~~~~~D~ 60 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQV-----------------------RVVLAPGATDPACDE 60 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCccc-----------------------eeecCCCCCCCCCCC
Confidence 346677 89999999999999999999999998 76432210 001111112345678
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVD 245 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~ 245 (726)
.|||||||+++ .||||+|+|+.+|++++ ...++++||+||++++++|||||||......
T Consensus 61 ~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~ 119 (298)
T cd07494 61 NGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSP 119 (298)
T ss_pred CCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCc
Confidence 89999999875 68899999999999854 4567899999999999999999999863211
Q ss_pred C---------cccHHHHHHHHhhhCCcEEEEccCCCCCCCCCCCCCceEEEecccC
Q 041951 246 F---------SEDAISIGAFHAMAKGVLTLNSAGNSGPGLTASVAPWLMSVAASTT 292 (726)
Q Consensus 246 ~---------~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~p~vitVga~~~ 292 (726)
. ....+..++..|.++|++||+||||++... |+..|++|+||+++.
T Consensus 120 ~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~~~-Pa~~p~viaVga~~~ 174 (298)
T cd07494 120 GTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGWSF-PAQHPEVIAAGGVFV 174 (298)
T ss_pred ccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCCCc-CCCCCCEEEEEeEec
Confidence 1 234577788888999999999999998643 999999999999754
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=369.83 Aligned_cols=262 Identities=24% Similarity=0.256 Sum_probs=186.7
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCC
Q 041951 104 LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKD 183 (726)
Q Consensus 104 VvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~ 183 (726)
.+|||||||||..||+|... +.....+... .....|..||||||||||++....
T Consensus 1 p~VaviDtGi~~~hp~l~~~------------------------~~~~~~~~~~-~~~~~d~~gHGT~vAgiia~~~~~- 54 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPA------------------------LAEDDLDSDE-PGWTADDLGHGTAVAGLALYGDLT- 54 (291)
T ss_pred CEEEEecCCCCCCChhhhhh------------------------hccccccccC-CCCcCCCCCChHHHHHHHHcCccc-
Confidence 37999999999999999843 1111112111 011568999999999999876421
Q ss_pred CccccccccceeeecCCcEEEEEEeeCCCC-----CChHHHHHHHHHHhhCC---CcEEEEcccCCCCCCCc-ccHHHHH
Q 041951 184 ASFYGVGQGTARGGVPSGRIAAYKVCFPGG-----CDSAGVLGAFDDAIADG---VDVITISIGGDSAVDFS-EDAISIG 254 (726)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-----~~~~~i~~ai~~A~~~g---~dVInlSlG~~~~~~~~-~~~~~~a 254 (726)
.....|+||+|+|+.+|++...| ....++++||+||++.+ ++|||||||........ ...+..+
T Consensus 55 -------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~ 127 (291)
T cd04847 55 -------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAA 127 (291)
T ss_pred -------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHH
Confidence 11238999999999999998863 45678999999999753 59999999998422211 1245555
Q ss_pred HHH-hhhCCcEEEEccCCCCCCCC--------------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCC
Q 041951 255 AFH-AMAKGVLTLNSAGNSGPGLT--------------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMK 319 (726)
Q Consensus 255 ~~~-a~~~Gv~vV~AAGN~g~~~~--------------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 319 (726)
+++ +.++|++||+||||++.... |+.++++|+|||++.+.........
T Consensus 128 id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~----------------- 190 (291)
T cd04847 128 LDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY----------------- 190 (291)
T ss_pred HHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc-----------------
Confidence 554 55899999999999998754 3556799999987654210000000
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEee
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVS 399 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~ 399 (726)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCc
Q 041951 400 QDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEIL 479 (726)
Q Consensus 400 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 479 (726)
+.......+.||+|||.. ++.+
T Consensus 191 --------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~ 212 (291)
T cd04847 191 --------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPI 212 (291)
T ss_pred --------------------------------------------------------cccccccCCCccccCCCC--CCCc
Confidence 000001233499999998 9999
Q ss_pred cCceEeCCCcEEeecCCCccCC-----cCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 480 KPDISAPGVDILAAFSPLAQAS-----IDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 480 KPDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
||||+|||++|.+......... ..........|..++|||||||||||++|||++++|++++++||++|++||+
T Consensus 213 KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 213 KPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999988654211000 0000112367999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=358.29 Aligned_cols=230 Identities=33% Similarity=0.461 Sum_probs=195.0
Q ss_pred ccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccch
Q 041951 94 ITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTA 173 (726)
Q Consensus 94 ~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVA 173 (726)
.|..+++|+||+|||||+||+++||+|.+. +...+.+..+ ....|..+||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------------------~~~~~~~~~~--~~~~d~~~HGT~vA 70 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------------------AIWGADFVGG--DPDSDCNGHGTHVA 70 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------------------eeeeeecCCC--CCCCCCCccHHHHH
Confidence 777889999999999999999999999853 2223333221 22567889999999
Q ss_pred hhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhC-----CCcEEEEcccCCCCCCCc
Q 041951 174 STASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIAD-----GVDVITISIGGDSAVDFS 247 (726)
Q Consensus 174 Giaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~-----g~dVInlSlG~~~~~~~~ 247 (726)
|||+|+. .||||+|+|+.+|+++..+ ...+.++++++++++. +++|||||||...
T Consensus 71 giia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----- 131 (255)
T cd04077 71 GTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----- 131 (255)
T ss_pred HHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC-----
Confidence 9999863 6899999999999998875 6778899999999987 4899999999882
Q ss_pred ccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceee
Q 041951 248 EDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFP 324 (726)
Q Consensus 248 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 324 (726)
...+..++.++.++|+++|+||||+|.... |+..|++|+||+.+.+
T Consensus 132 ~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------------------- 180 (255)
T cd04077 132 STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------------------- 180 (255)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------------------------------
Confidence 456677778889999999999999998764 8889999999986432
Q ss_pred EEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHH
Q 041951 325 LVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLS 404 (726)
Q Consensus 325 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~ 404 (726)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceE
Q 041951 405 SLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDIS 484 (726)
Q Consensus 405 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 484 (726)
+.++.||++||.. ||+
T Consensus 181 --------------------------------------------------------~~~~~~S~~g~~~--------~i~ 196 (255)
T cd04077 181 --------------------------------------------------------DARASFSNYGSCV--------DIF 196 (255)
T ss_pred --------------------------------------------------------CCccCcccCCCCC--------cEE
Confidence 2357899999987 999
Q ss_pred eCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccc
Q 041951 485 APGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWA 554 (726)
Q Consensus 485 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~ 554 (726)
|||.+|.++.... .+.|..++|||||||+|||++|||++++|++++++||++|++||++
T Consensus 197 apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 197 APGVDILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred eCCCCeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9999999877642 1679999999999999999999999999999999999999999975
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=361.73 Aligned_cols=319 Identities=24% Similarity=0.320 Sum_probs=253.4
Q ss_pred cEEEEEeCCCCCCCCcchhhHHHHHHHHhcC-------CCCcc------------ceEEEec---cceeEEEEEeCHHHH
Q 041951 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVG-------RSVED------------ILVRSYR---RSFNGFAAKLTVDER 59 (726)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~------------~i~~~y~---~~~~g~s~~l~~~~~ 59 (726)
..|||.++.... ++..+.|.++++..+.. +..-. .|.+.|. .+|+|..-..+.+-+
T Consensus 81 ~~YiV~f~~~~~--q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v 158 (501)
T KOG1153|consen 81 SRYIVVFKPDAS--QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESV 158 (501)
T ss_pred cceEEEeCCCcc--HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccccee
Confidence 479999994444 67778899999888761 11111 1444454 378888888999999
Q ss_pred HHHHcCCCeEEEEeceeeccc--------ccCCccccCCCc------cccc----cCCCCCCcEEEEEeccCCCCCCCCC
Q 041951 60 QKLASMEKVVSVFPSRTLQLH--------TTRSWDFMGLNL------SITR----KRSVESNLIVGVIDTGIWPESESFS 121 (726)
Q Consensus 60 ~~L~~~p~V~~v~~~~~~~~~--------~~~s~~~~g~~~------~~~~----~~~~G~GVvVaVIDtGid~~Hp~f~ 121 (726)
..+++.|-+..++++...... ..-+|.+..+.. .-|. .-..|+||...|+||||+.+||+|.
T Consensus 159 ~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFe 238 (501)
T KOG1153|consen 159 CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFE 238 (501)
T ss_pred eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccc
Confidence 999999999999887665533 233444433321 1121 2337999999999999999999999
Q ss_pred CCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCc
Q 041951 122 DEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSG 201 (726)
Q Consensus 122 d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A 201 (726)
++ ++|-. ..... ....|++||||||||+|+++. .|||.++
T Consensus 239 gR------a~wGa-----------------~i~~~---~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s 278 (501)
T KOG1153|consen 239 GR------AIWGA-----------------TIPPK---DGDEDCNGHGTHVAGLIGSKT--------------FGVAKNS 278 (501)
T ss_pred cc------eeccc-----------------ccCCC---CcccccCCCcceeeeeeeccc--------------ccccccc
Confidence 65 33411 11101 245689999999999999885 7889999
Q ss_pred EEEEEEeeCCCC-CChHHHHHHHHHHhhC---------CCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCC
Q 041951 202 RIAAYKVCFPGG-CDSAGVLGAFDDAIAD---------GVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGN 271 (726)
Q Consensus 202 ~L~~~kv~~~~g-~~~~~i~~ai~~A~~~---------g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN 271 (726)
+|+++||+.++| +..+++++++|++++. +..|.|||+|+. ..-++..|+++|.+.|+.+++||||
T Consensus 279 ~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAGN 353 (501)
T KOG1153|consen 279 NLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAGN 353 (501)
T ss_pred ceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCCC
Confidence 999999999998 8999999999999875 578999999999 3356788889999999999999999
Q ss_pred CCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCC
Q 041951 272 SGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCV 348 (726)
Q Consensus 272 ~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~ 348 (726)
+..+.+ |+.+..+|||||++..
T Consensus 354 e~eDAC~~SPass~~aITVGAst~~------------------------------------------------------- 378 (501)
T KOG1153|consen 354 EHEDACNSSPASSKKAITVGASTKN------------------------------------------------------- 378 (501)
T ss_pred cchhhhccCcccccccEEecccccc-------------------------------------------------------
Confidence 999888 8999999999997532
Q ss_pred CCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhcee
Q 041951 349 NGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHF 428 (726)
Q Consensus 349 ~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 428 (726)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCC
Q 041951 429 IFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKR 508 (726)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 508 (726)
+.+|.||+||++. ||-|||.+|+|+|.++.
T Consensus 379 --------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~---------- 408 (501)
T KOG1153|consen 379 --------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN---------- 408 (501)
T ss_pred --------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCc----------
Confidence 4689999999999 99999999999998753
Q ss_pred CCcceeeccccchhHHHHHHHHHHHhcCCC---------CCHHHHHHHHHcccc
Q 041951 509 KPKYNIISGTSMSCPHAAGVAAYVKSFHPD---------WSPSAIKSAIMTTAW 553 (726)
Q Consensus 509 ~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------ls~~~ik~~L~~TA~ 553 (726)
+.-...||||||+|||||++|..+..+|. .|+.++|..++.-..
T Consensus 409 -~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 409 -NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred -cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 56789999999999999999999998873 388888888776554
|
|
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=358.08 Aligned_cols=244 Identities=31% Similarity=0.405 Sum_probs=202.1
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
+.++++ .+|..+ +|+||+|||||+||+++||+|... ++...+++... ...+.|.
T Consensus 14 ~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~-~~~~~d~ 67 (260)
T cd07484 14 DQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-----------------------KFVLGYDFVDN-DSDAMDD 67 (260)
T ss_pred cccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccC-----------------------CcccceeccCC-CCCCCCC
Confidence 445666 899988 999999999999999999998532 22333333221 1336678
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAV 244 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~ 244 (726)
.+|||||||||++.... ..| +.|+||+|+|+.+|+++..+ +...++++||+++++.+++|||||||...
T Consensus 68 ~~HGT~vagii~~~~~~---~~~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~-- 137 (260)
T cd07484 68 NGHGTHVAGIIAAATNN---GTG-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL-- 137 (260)
T ss_pred CCcHHHHHHHHhCccCC---CCc-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC--
Confidence 89999999999987421 223 38999999999999998765 77888999999999999999999999883
Q ss_pred CCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 245 DFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 245 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
....+..++..+.++|++||+||||+|.... |+..+++|+||+.+.+
T Consensus 138 --~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------------------- 186 (260)
T cd07484 138 --GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD----------------------------- 186 (260)
T ss_pred --CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-----------------------------
Confidence 3456677777888999999999999998754 8999999999985422
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+..+.||++|+.. |
T Consensus 187 ----------------------------------------------------------~~~~~~s~~g~~~--------~ 200 (260)
T cd07484 187 ----------------------------------------------------------DKRASFSNYGKWV--------D 200 (260)
T ss_pred ----------------------------------------------------------CCcCCcCCCCCCc--------e
Confidence 2356889999876 9
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccC
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMN 556 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~ 556 (726)
++|||.+|++..+. +.|..++|||||||+|||++|||++++| |++.+||++|++||+++.
T Consensus 201 ~~apG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~g 260 (260)
T cd07484 201 VSAPGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDIG 260 (260)
T ss_pred EEeCCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccCc
Confidence 99999999988765 5789999999999999999999999999 999999999999998863
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=355.01 Aligned_cols=248 Identities=30% Similarity=0.416 Sum_probs=186.1
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCC---CCCCCCCCCcCCcccchhhcccc
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP---APYDTARDEEGHGSHTASTASGN 179 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~---~~~~~~~D~~gHGThVAGiaag~ 179 (726)
||+|||||+|||++||+|.+. +.....|.. +......|..+|||||||||+|+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~ 56 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR------------------------VAQWADFDENRRISATEVFDAGGHGTHVSGTIGGG 56 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc------------------------cCCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcC
Confidence 799999999999999999853 111112211 11234567889999999999998
Q ss_pred CCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhh
Q 041951 180 EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAM 259 (726)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~ 259 (726)
.. ++...|+||+|+|+.+|++...++...++++||+||++.+++|||||||..... .+.+..+++.+.
T Consensus 57 ~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~ 124 (254)
T cd07490 57 GA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALS 124 (254)
T ss_pred CC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHH
Confidence 53 223489999999999999987767888999999999999999999999988322 556665555555
Q ss_pred h-CCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCccccc
Q 041951 260 A-KGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQ 336 (726)
Q Consensus 260 ~-~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (726)
+ +|++||+||||+|.... |+..+++|+||+++.+.........
T Consensus 125 ~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~---------------------------------- 170 (254)
T cd07490 125 NQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF---------------------------------- 170 (254)
T ss_pred HcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC----------------------------------
Confidence 4 69999999999988755 8889999999997543210000000
Q ss_pred ccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchh
Q 041951 337 ELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYI 416 (726)
Q Consensus 337 ~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 416 (726)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCC
Q 041951 417 FYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSP 496 (726)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 496 (726)
........+.+|.. .....||||+|||.+|+++...
T Consensus 171 -------------------------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~ 206 (254)
T cd07490 171 -------------------------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQG 206 (254)
T ss_pred -------------------------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccC
Confidence 00012222333332 2556899999999999986522
Q ss_pred CccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 497 LAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
. ...+.|..++|||||||+|||++|||++++|+|++.+||++|++||+
T Consensus 207 ~---------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 207 A---------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred C---------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1 11267999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=359.01 Aligned_cols=275 Identities=26% Similarity=0.333 Sum_probs=200.7
Q ss_pred cCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhc
Q 041951 97 KRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTA 176 (726)
Q Consensus 97 ~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGia 176 (726)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+..+ ..|..+|||||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~-~~~~~~~~~~~~~~~----~~d~~~HGT~vAgii 64 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN-LFHRKIVRYDSLSDT----KDDVDGHGTHVAGII 64 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc-cCcccEEEeeccCCC----CCCCCCCcchhheee
Confidence 58899999999999999999999986421 0111 123455544444222 227899999999999
Q ss_pred cccCCCCCccccccccceeeecCCcEEEEEEeeCCCC--CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHH
Q 041951 177 SGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG--CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIG 254 (726)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a 254 (726)
+|......... .+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||..... .......+
T Consensus 65 a~~~~~~~~~~-----~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~~~~~~ 137 (293)
T cd04842 65 AGKGNDSSSIS-----LYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYTLLARA 137 (293)
T ss_pred ccCCcCCCccc-----ccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccchHHHH
Confidence 99864322111 239999999999999988765 5666789999999999999999999998321 12333344
Q ss_pred HHHhh-h-CCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEE
Q 041951 255 AFHAM-A-KGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVY 327 (726)
Q Consensus 255 ~~~a~-~-~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~ 327 (726)
++++. + +|+++|+||||++.... |+.++++|+|||++......
T Consensus 138 ~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------------------------ 187 (293)
T cd04842 138 YDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------------------------ 187 (293)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc------------------------------
Confidence 44433 3 79999999999987642 88889999999976542100
Q ss_pred ccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHH
Q 041951 328 GKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLI 407 (726)
Q Consensus 328 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 407 (726)
...|..
T Consensus 188 ------------~~~~~~-------------------------------------------------------------- 193 (293)
T cd04842 188 ------------GEGGLG-------------------------------------------------------------- 193 (293)
T ss_pred ------------cccccc--------------------------------------------------------------
Confidence 000000
Q ss_pred HHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCC
Q 041951 408 SYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPG 487 (726)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 487 (726)
.......++.||++||+. ++++||||+|||
T Consensus 194 ------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG 223 (293)
T cd04842 194 ------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPG 223 (293)
T ss_pred ------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCC
Confidence 001125689999999998 899999999999
Q ss_pred CcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcC-----C---CCCHHHHHHHHHcccc
Q 041951 488 VDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH-----P---DWSPSAIKSAIMTTAW 553 (726)
Q Consensus 488 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~ls~~~ik~~L~~TA~ 553 (726)
++|+++..... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 224 ~~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 224 TGILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999875420 0011123678999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=357.16 Aligned_cols=256 Identities=25% Similarity=0.330 Sum_probs=189.6
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCcccccccc-----CCCc---------ccCCceeEeeeecCCCCCCCCCCCcCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACN-----GGKN---------FTCNNKIIGARYYTPAPYDTARDEEGH 168 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~-----~g~~---------f~~n~k~ig~~~~~~~~~~~~~D~~gH 168 (726)
||+|||||||||++||+|.+.-.. .|+-..+ .+.. .+.+.+.. ....+......+..+|
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~----g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~H 73 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLP----GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV---PPGGFCGSGVSPSSWH 73 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcccc----CcccccCcccccCCCCCCCCCCCcccccccccc---cccccccCCCCCCCCC
Confidence 799999999999999999864210 0100000 0000 00000000 0001112344567899
Q ss_pred cccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHh----------hCCCcEEEEcc
Q 041951 169 GSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAI----------ADGVDVITISI 238 (726)
Q Consensus 169 GThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~----------~~g~dVInlSl 238 (726)
||||||||+|... +..|+ .||||+|+|+.+|+++..+.+.+++++|++||+ .++++||||||
T Consensus 74 GT~vAgiiaa~~~---~~~~~-----~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~ 145 (285)
T cd07496 74 GTHVAGTIAAVTN---NGVGV-----AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSL 145 (285)
T ss_pred HHHHHHHHhCcCC---CCCCc-----eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCC
Confidence 9999999999853 23344 899999999999999877778889999999998 45789999999
Q ss_pred cCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEecc
Q 041951 239 GGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINS 315 (726)
Q Consensus 239 G~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 315 (726)
|.... ....+..++..+.++|++||+||||++.... |+..+++|+||+++.+
T Consensus 146 G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------------- 200 (285)
T cd07496 146 GGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR---------------------- 200 (285)
T ss_pred CCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC----------------------
Confidence 98832 1456777888899999999999999998862 8889999999985422
Q ss_pred CCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCE
Q 041951 316 FAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPA 395 (726)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~ 395 (726)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCC
Q 041951 396 VAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIV 475 (726)
Q Consensus 396 ~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~ 475 (726)
+.++.||++|+..
T Consensus 201 -----------------------------------------------------------------~~~~~~S~~g~~v-- 213 (285)
T cd07496 201 -----------------------------------------------------------------GQRASYSNYGPAV-- 213 (285)
T ss_pred -----------------------------------------------------------------CCcccccCCCCCC--
Confidence 3467899999987
Q ss_pred CCCccCceEeCCCcEEeecCCCccCC--cCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 041951 476 PEILKPDISAPGVDILAAFSPLAQAS--IDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 551 (726)
Q Consensus 476 ~~~~KPDI~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 551 (726)
||.|||++|.+......... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 214 ------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 214 ------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999998776432110 00011223578999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=348.21 Aligned_cols=238 Identities=28% Similarity=0.409 Sum_probs=189.4
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCC
Q 041951 104 LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKD 183 (726)
Q Consensus 104 VvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~ 183 (726)
|+|||||+|||++||+|.+.. +++..+.+..+ .....|..+|||||||||+|+..
T Consensus 1 V~VaviDsGi~~~hp~l~~~~----------------------~~~~~~~~~~~-~~~~~~~~~HGT~vAgiiag~~~-- 55 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP----------------------KLVPGWNFVSN-NDPTSDIDGHGTACAGVAAAVGN-- 55 (242)
T ss_pred CEEEEecCCCCCCChhhccCc----------------------CccCCccccCC-CCCCCCCCCCHHHHHHHHHhccC--
Confidence 789999999999999998530 11111222111 12456789999999999999852
Q ss_pred CccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhh-C
Q 041951 184 ASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMA-K 261 (726)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~-~ 261 (726)
+..| +.|+||+|+|+.+|++...+ +...++.+++++|++.+++|||||||...........+..++..+.+ +
T Consensus 56 -~~~~-----~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T cd07498 56 -NGLG-----VAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGK 129 (242)
T ss_pred -CCce-----eEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcC
Confidence 1223 38999999999999997765 67888999999999999999999999874444456677777778888 9
Q ss_pred CcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccC
Q 041951 262 GVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELS 339 (726)
Q Consensus 262 Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 339 (726)
|+++|+||||+|.... |+..+++|+||+++..
T Consensus 130 gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------------------------- 163 (242)
T cd07498 130 GGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------------------------- 163 (242)
T ss_pred CeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------------------------
Confidence 9999999999998876 8889999999986422
Q ss_pred CCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhh
Q 041951 340 SQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYI 419 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 419 (726)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCcc
Q 041951 420 LRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQ 499 (726)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 499 (726)
+.++.||++||.. |++|||.++.........
T Consensus 164 -----------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~ 194 (242)
T cd07498 164 -----------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS 194 (242)
T ss_pred -----------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc
Confidence 3357899999987 999999999887543211
Q ss_pred CCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 041951 500 ASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 551 (726)
Q Consensus 500 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 551 (726)
......+.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 195 ----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 195 ----AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ----cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 011223678999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=357.33 Aligned_cols=146 Identities=28% Similarity=0.403 Sum_probs=109.0
Q ss_pred ccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhh
Q 041951 96 RKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTAST 175 (726)
Q Consensus 96 ~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGi 175 (726)
..+++|+||+|||||+|||.+||+|.+.. +....|.+. ....|..+||||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~------------------------~~~~~~~~~--~~~~d~~gHGT~VAgi 55 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD------------------------ITTKSFVGG--EDVQDGHGHGTHCAGT 55 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc------------------------ccCcccCCC--CCCCCCCCcHHHHHHH
Confidence 45789999999999999999999998541 112223221 2356789999999999
Q ss_pred ccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCC---------CC
Q 041951 176 ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSA---------VD 245 (726)
Q Consensus 176 aag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~---------~~ 245 (726)
|+|+... +...||||+|+|+.+|++...+ .....+++||+||++.|++|||||||.... ..
T Consensus 56 iag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~ 126 (297)
T cd07480 56 IFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGL 126 (297)
T ss_pred HhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCc
Confidence 9987532 2237999999999999987654 667779999999999999999999998631 01
Q ss_pred CcccHHHHHHHHh---------------hhCCcEEEEccCCCCCCC
Q 041951 246 FSEDAISIGAFHA---------------MAKGVLTLNSAGNSGPGL 276 (726)
Q Consensus 246 ~~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~g~~~ 276 (726)
.....++.....+ .++|++||+||||++...
T Consensus 127 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 127 AFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 1122233222233 678999999999998654
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=349.20 Aligned_cols=245 Identities=19% Similarity=0.179 Sum_probs=177.8
Q ss_pred CCCccccccC-CCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcC
Q 041951 89 GLNLSITRKR-SVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167 (726)
Q Consensus 89 g~~~~~~~~~-~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~g 167 (726)
+++ ++|+.. ..|+||+|+|||+|||.+||+|.++.... ..+ ..+.|..+
T Consensus 3 ~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~--------------------------~~~---~~~~d~~g 52 (277)
T cd04843 3 NAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL--------------------------ISG---LTDQADSD 52 (277)
T ss_pred ChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc--------------------------cCC---CCCCCCCC
Confidence 455 789874 45999999999999999999998541100 000 12567889
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh----CCCcEEEEcccCCCC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA----DGVDVITISIGGDSA 243 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~----~g~dVInlSlG~~~~ 243 (726)
|||||||||+|.. +.+|. .||||+|+|+.+|++. .++++++|.+|++ .++.+||||||....
T Consensus 53 HGT~VAGiIaa~~----n~~G~-----~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~ 118 (277)
T cd04843 53 HGTAVLGIIVAKD----NGIGV-----TGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNN 118 (277)
T ss_pred Ccchhheeeeeec----CCCce-----eeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCc
Confidence 9999999999873 33444 8999999999999975 3456666666666 456789999998732
Q ss_pred CC-----CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-CC--------------CCCceEEEecccCCceeeeEEEeC
Q 041951 244 VD-----FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-AS--------------VAPWLMSVAASTTDRLFVDKVALG 303 (726)
Q Consensus 244 ~~-----~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~--------------~~p~vitVga~~~~~~~~~~~~~~ 303 (726)
.. .....+..++.++.++|+++|+||||++.... +. ..|++|+|||++.+.
T Consensus 119 ~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~--------- 189 (277)
T cd04843 119 GYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT--------- 189 (277)
T ss_pred CcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC---------
Confidence 11 12344556777888999999999999987642 11 123566666543210
Q ss_pred CCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccC
Q 041951 304 NGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNE 383 (726)
Q Consensus 304 ~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~ 383 (726)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCee
Q 041951 384 FDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVV 463 (726)
Q Consensus 384 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 463 (726)
...+
T Consensus 190 ----------------------------------------------------------------------------~~~~ 193 (277)
T cd04843 190 ----------------------------------------------------------------------------GHTR 193 (277)
T ss_pred ----------------------------------------------------------------------------CCcc
Confidence 0126
Q ss_pred ecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----c-CCC
Q 041951 464 VGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----F-HPD 538 (726)
Q Consensus 464 a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~ 538 (726)
+.||++||.. ||.|||++|+++....... ..+.....|..++|||||||||||++|||++ + +|+
T Consensus 194 ~~fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~ 262 (277)
T cd04843 194 LAFSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTP 262 (277)
T ss_pred ccccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 8899999987 9999999999988653211 0011113457899999999999999999974 3 499
Q ss_pred CCHHHHHHHHHcccc
Q 041951 539 WSPSAIKSAIMTTAW 553 (726)
Q Consensus 539 ls~~~ik~~L~~TA~ 553 (726)
|+++|||++|+.|++
T Consensus 263 lt~~~v~~~L~~t~~ 277 (277)
T cd04843 263 LTPIEMRELLTATGT 277 (277)
T ss_pred CCHHHHHHHHHhcCC
Confidence 999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=343.40 Aligned_cols=249 Identities=29% Similarity=0.437 Sum_probs=189.1
Q ss_pred CCcEEEEEeccCCCCCCCCCCCCCC-CCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccC
Q 041951 102 SNLIVGVIDTGIWPESESFSDEGFG-PAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNE 180 (726)
Q Consensus 102 ~GVvVaVIDtGid~~Hp~f~d~g~~-~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~ 180 (726)
+||+|||||||||++||+|.+.-.. .....+.+....+..+. ++. ..+.+. ++..++.|..+|||||||||+|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~~~~d~~~HGT~va~ii~~~~ 77 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV--DDI-YGWNFV-NNDNDPMDDNGHGTHVAGIIGAVG 77 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc--cCC-Cccccc-CCCCCCCCCCCcHHHHHHHHHCcC
Confidence 6899999999999999999964210 00001111111111111 111 111111 123556788999999999999885
Q ss_pred CCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhh
Q 041951 181 VKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAM 259 (726)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~ 259 (726)
..+ .+ +.|+||+|+|+.+|++...+ ++..++++++++|++.+++|||+|||.... ...+..++.++.
T Consensus 78 ~~~---~~-----~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~~~~~~~ 145 (259)
T cd07473 78 NNG---IG-----IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRDAIARAI 145 (259)
T ss_pred CCC---Cc-----eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHHHHHHHH
Confidence 321 12 38999999999999998876 788899999999999999999999998832 466777788888
Q ss_pred hCCcEEEEccCCCCCCCC-----CC--CCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCc
Q 041951 260 AKGVLTLNSAGNSGPGLT-----AS--VAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEIS 332 (726)
Q Consensus 260 ~~Gv~vV~AAGN~g~~~~-----~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~ 332 (726)
++|+++|+||||+|.... |. ..+++|+||+.+.+
T Consensus 146 ~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~--------------------------------------- 186 (259)
T cd07473 146 DAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN--------------------------------------- 186 (259)
T ss_pred hCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC---------------------------------------
Confidence 999999999999987632 33 34678888875321
Q ss_pred ccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhc
Q 041951 333 ESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKES 412 (726)
Q Consensus 333 ~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 412 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEe
Q 041951 413 TKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILA 492 (726)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 492 (726)
+.++.||++||. +||+.|||.++++
T Consensus 187 ------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~ 211 (259)
T cd07473 187 ------------------------------------------------DALASFSNYGKK-------TVDLAAPGVDILS 211 (259)
T ss_pred ------------------------------------------------CCcCcccCCCCC-------CcEEEeccCCeEe
Confidence 335668999985 4699999999998
Q ss_pred ecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 493 AFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 493 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
.... +.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 212 ~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 212 TSPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 6554 67999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=355.83 Aligned_cols=271 Identities=33% Similarity=0.493 Sum_probs=208.8
Q ss_pred EEEEEeccCCCCCCCCC-CCCCCCCCccccccccCCCcccCCceeEeeeecCCC--CCCCCCCCcCCcccchhhccccCC
Q 041951 105 IVGVIDTGIWPESESFS-DEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA--PYDTARDEEGHGSHTASTASGNEV 181 (726)
Q Consensus 105 vVaVIDtGid~~Hp~f~-d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~--~~~~~~D~~gHGThVAGiaag~~~ 181 (726)
+|||||+|||++||+|. .. + ...++.+.+.+.++ ......|..+|||||||||+|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~- 60 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F------------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG- 60 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E------------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-
T ss_pred CEEEEcCCcCCCChhHccCC-c------------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-
Confidence 69999999999999998 32 1 01234445566433 24556778999999999999986
Q ss_pred CCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHh-hCCCcEEEEcccCCC--CCCCcccHHHHHHHHh
Q 041951 182 KDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAI-ADGVDVITISIGGDS--AVDFSEDAISIGAFHA 258 (726)
Q Consensus 182 ~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~-~~g~dVInlSlG~~~--~~~~~~~~~~~a~~~a 258 (726)
. .+..+. .|+||+|+|+.+|++...+....++++++++++ +.+++|||+|||... ........+..++..+
T Consensus 61 ~-~~~~~~-----~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T PF00082_consen 61 G-NNGPGI-----NGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYA 134 (282)
T ss_dssp S-SSSSSE-----TCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHH
T ss_pred c-cccccc-----ccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccccc
Confidence 2 232233 899999999999998776677788999999999 899999999999831 1222334456666678
Q ss_pred hhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcc
Q 041951 259 MAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISE 333 (726)
Q Consensus 259 ~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 333 (726)
.++|+++|+||||++.... |+..+++|+||++...
T Consensus 135 ~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------------------------- 174 (282)
T PF00082_consen 135 EKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------------------------- 174 (282)
T ss_dssp HHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------------------------
T ss_pred cccCcceeeccccccccccccccccccccccccccccccc----------------------------------------
Confidence 8999999999999887653 6667888888875321
Q ss_pred cccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcC
Q 041951 334 SCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKEST 413 (726)
Q Consensus 334 ~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 413 (726)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEee
Q 041951 414 KYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAA 493 (726)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 493 (726)
+.++.||++|+.. .++++||||+|||.++++.
T Consensus 175 -----------------------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~ 206 (282)
T PF00082_consen 175 -----------------------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSA 206 (282)
T ss_dssp -----------------------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEE
T ss_pred -----------------------------------------------ccccccccccccc-ccccccccccccccccccc
Confidence 2357889996543 2789999999999999888
Q ss_pred cCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCC
Q 041951 494 FSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVN 573 (726)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in 573 (726)
++... ...|..++|||||||+|||++|||++++|++++.+||.+|++||+++........+..||||+||
T Consensus 207 ~~~~~----------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in 276 (282)
T PF00082_consen 207 VPGSD----------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLIN 276 (282)
T ss_dssp ETTTE----------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-
T ss_pred ccccc----------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhC
Confidence 86531 03478899999999999999999999999999999999999999999832211236688999999
Q ss_pred ccccCC
Q 041951 574 PVKAIN 579 (726)
Q Consensus 574 ~~~Al~ 579 (726)
+.+||+
T Consensus 277 ~~~a~~ 282 (282)
T PF00082_consen 277 AEKALN 282 (282)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=336.75 Aligned_cols=224 Identities=33% Similarity=0.521 Sum_probs=184.6
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVK 182 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~ 182 (726)
||+|||||+||+++||+|.+. ++..++|..++.....|..+|||||||||++....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~------------------------~~~~~~~~~~~~~~~~~~~~HGT~vA~ii~~~~~~ 56 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN------------------------IVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNG 56 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc------------------------ccCcccccCCCCCCCCCCCCCHHHHHHHHhcccCC
Confidence 799999999999999999853 22223332211134567889999999999987532
Q ss_pred CCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhC
Q 041951 183 DASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAK 261 (726)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~ 261 (726)
. .+.|+||+|+|+.+|+++..+ ....++++++++|++.|++|||||||... ....+..++..+.++
T Consensus 57 ~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a~~~ 123 (229)
T cd07477 57 V---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAYAA 123 (229)
T ss_pred C---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHHHHC
Confidence 1 238999999999999998776 66789999999999999999999999873 234556666788899
Q ss_pred CcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccc
Q 041951 262 GVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQE 337 (726)
Q Consensus 262 Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (726)
|+++|+||||++.... |+..+++|+||+++.+
T Consensus 124 giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------------------------- 159 (229)
T cd07477 124 GILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------------------------------- 159 (229)
T ss_pred CCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------------------------------
Confidence 9999999999987654 7778899999875432
Q ss_pred cCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhh
Q 041951 338 LSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIF 417 (726)
Q Consensus 338 ~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 417 (726)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCC
Q 041951 418 YILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPL 497 (726)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 497 (726)
+.++.||++|+.. |+.|||++|+++.+.
T Consensus 160 -------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~- 187 (229)
T cd07477 160 -------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN- 187 (229)
T ss_pred -------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-
Confidence 2356789999876 999999999998875
Q ss_pred ccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 041951 498 AQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 551 (726)
Q Consensus 498 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 551 (726)
+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 188 ------------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 ------------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ------------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 578999999999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=348.97 Aligned_cols=248 Identities=19% Similarity=0.165 Sum_probs=181.6
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeec-CCCCCCCCC--C
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY-TPAPYDTAR--D 164 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~-~~~~~~~~~--D 164 (726)
++++ .+|+.+++|+||+|+|||+|||+.||+|.+.-.. ...+++ ..+....+. |
T Consensus 26 ~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 82 (297)
T cd04059 26 LNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP----------------------EASYDFNDNDPDPTPRYDD 82 (297)
T ss_pred cccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc----------------------cccccccCCCCCCCCcccc
Confidence 4555 8999999999999999999999999999854111 011122 111112222 7
Q ss_pred CcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCC
Q 041951 165 EEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAV 244 (726)
Q Consensus 165 ~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~ 244 (726)
..+|||||||||+|+... ..|. .||||+|+|+.+|++... ........++.++.+ .++|||||||.....
T Consensus 83 ~~gHGT~vAgiiag~~~~---~~~~-----~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~ 152 (297)
T cd04059 83 DNSHGTRCAGEIAAVGNN---GICG-----VGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDG 152 (297)
T ss_pred ccccCcceeeEEEeecCC---Cccc-----ccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCC
Confidence 889999999999998521 1133 899999999999998654 334455666666554 469999999987422
Q ss_pred C---CcccHHHHHHHHhhh-----CCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCeeEee
Q 041951 245 D---FSEDAISIGAFHAMA-----KGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISG 310 (726)
Q Consensus 245 ~---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g 310 (726)
. ........++.++.+ +|++||+||||+|.... +...|++|+|||++.+
T Consensus 153 ~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~----------------- 215 (297)
T cd04059 153 KTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN----------------- 215 (297)
T ss_pred CccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC-----------------
Confidence 1 112233344444433 69999999999998332 4566789999875432
Q ss_pred EEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCcccee
Q 041951 311 YSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFV 390 (726)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~ 390 (726)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCC
Q 041951 391 VSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRG 470 (726)
Q Consensus 391 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~G 470 (726)
+.++.||++|
T Consensus 216 ----------------------------------------------------------------------g~~~~~s~~g 225 (297)
T cd04059 216 ----------------------------------------------------------------------GVRASYSEVG 225 (297)
T ss_pred ----------------------------------------------------------------------CCCcCCCCCC
Confidence 3457899999
Q ss_pred CCCCCCCCccCceEeCCCc-------EEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHH
Q 041951 471 PNAIVPEILKPDISAPGVD-------ILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSA 543 (726)
Q Consensus 471 p~~~~~~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ 543 (726)
+.. +++|||.. |+++.... ....|..++|||||||+|||++|||+|++|+|++.|
T Consensus 226 ~~~--------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~ 287 (297)
T cd04059 226 SSV--------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRD 287 (297)
T ss_pred CcE--------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHH
Confidence 987 89999987 66554431 015678899999999999999999999999999999
Q ss_pred HHHHHHcccc
Q 041951 544 IKSAIMTTAW 553 (726)
Q Consensus 544 ik~~L~~TA~ 553 (726)
||++|++||+
T Consensus 288 v~~~L~~TA~ 297 (297)
T cd04059 288 VQHILALTAR 297 (297)
T ss_pred HHHHHHHhcC
Confidence 9999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=337.44 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=117.0
Q ss_pred CCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC------CCCCCCCCcCCcccchh
Q 041951 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA------PYDTARDEEGHGSHTAS 174 (726)
Q Consensus 101 G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~------~~~~~~D~~gHGThVAG 174 (726)
+++|+|||||||||++||+|.+. ++..+.|..+ ......|..||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAg 57 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMAR 57 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHH
Confidence 78999999999999999999853 1111122110 01123468899999999
Q ss_pred hccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-------CChHHHHHHHHHHhhCCCcEEEEcccCCCCC--C
Q 041951 175 TASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-------CDSAGVLGAFDDAIADGVDVITISIGGDSAV--D 245 (726)
Q Consensus 175 iaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-------~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~--~ 245 (726)
||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||..... .
T Consensus 58 iI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~ 119 (247)
T cd07491 58 MIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDND 119 (247)
T ss_pred HHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccc
Confidence 995 569999999999987643 3567899999999999999999999987311 1
Q ss_pred CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccC
Q 041951 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTT 292 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~ 292 (726)
.....+..++.+|.++|++||+||||+|.... |+..|++|+|||++.
T Consensus 120 ~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 120 NDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred cchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 12567788888999999999999999987653 677889999998653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=328.08 Aligned_cols=220 Identities=24% Similarity=0.311 Sum_probs=174.7
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVK 182 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~ 182 (726)
||+|||||||||++||+|.+.-.. +..+.+ ..... +.....|..||||||||||++.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~~------~~~~~--~~~~~~d~~gHGT~vAgiia~~--- 57 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTID------LEIIV--VSAEGGDKDGHGTACAGIIKKY--- 57 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------cccccc------ccccc--CCCCCCCCCCcHHHHHHHHHcc---
Confidence 799999999999999999854110 000100 00011 1244567889999999999765
Q ss_pred CCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhC
Q 041951 183 DASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAK 261 (726)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~ 261 (726)
+|+++|+.+|+++..+ +....+++||+||+++|++|||||||... ......+..++.++.++
T Consensus 58 ---------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~~a~~~ 120 (222)
T cd07492 58 ---------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLEYAYKA 120 (222)
T ss_pred ---------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHHHHHHC
Confidence 6999999999998776 78889999999999999999999999883 22335567777888889
Q ss_pred CcEEEEccCCCCCCCC-CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCC
Q 041951 262 GVLTLNSAGNSGPGLT-ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSS 340 (726)
Q Consensus 262 Gv~vV~AAGN~g~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 340 (726)
|+++|+||||++.... |+..+++|+|++...++
T Consensus 121 g~l~V~aagN~~~~~~~Pa~~~~vi~V~~~~~~~---------------------------------------------- 154 (222)
T cd07492 121 GGIIVAAAPNNNDIGTPPASFPNVIGVKSDTADD---------------------------------------------- 154 (222)
T ss_pred CCEEEEECCCCCCCCCCCccCCceEEEEecCCCC----------------------------------------------
Confidence 9999999999987666 78889999998753221
Q ss_pred CCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhh
Q 041951 341 QECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYIL 420 (726)
Q Consensus 341 ~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~ 420 (726)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccC
Q 041951 421 RKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQA 500 (726)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 500 (726)
.. +.+++ ++|+.|||.+|+++.+.
T Consensus 155 -----------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~---- 178 (222)
T cd07492 155 -----------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPH---- 178 (222)
T ss_pred -----------------------------------------Cc---ccccC--------CceEEeCCCCeEeecCC----
Confidence 00 11133 34999999999998765
Q ss_pred CcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 501 SIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 501 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
+.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 179 ---------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 ---------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=340.67 Aligned_cols=151 Identities=28% Similarity=0.364 Sum_probs=105.9
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVK 182 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~ 182 (726)
.|+|||||+|||++||+|.+.-... ...+ .....+ .........+.....|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~-~~~~----~~~~~~------~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY-SKNL----VPKGGY------DGKEAGETGDINDIVDKLGHGTAVAGQIAANGN- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc-cccc----ccCCCc------CCccccccCCCCcCCCCCCcHhHHHHHHhcCCC-
Confidence 4899999999999999998531000 0000 000000 000000000123446778999999999998732
Q ss_pred CCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCC-------cccHHHHH
Q 041951 183 DASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDF-------SEDAISIG 254 (726)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~-------~~~~~~~a 254 (726)
..||||+|+|+.+|+++..+ ....++++||++|++++++|||||||....... ....+..+
T Consensus 69 -----------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
T cd07482 69 -----------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKA 137 (294)
T ss_pred -----------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHH
Confidence 15999999999999998776 488899999999999999999999997632111 12345666
Q ss_pred HHHhhhCCcEEEEccCCCCCCC
Q 041951 255 AFHAMAKGVLTLNSAGNSGPGL 276 (726)
Q Consensus 255 ~~~a~~~Gv~vV~AAGN~g~~~ 276 (726)
+..+.++|++||+||||+|...
T Consensus 138 i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 138 INYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred HHHHHHCCCEEEEeCCCCCccc
Confidence 7778899999999999999754
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=330.56 Aligned_cols=346 Identities=24% Similarity=0.337 Sum_probs=262.5
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHhcCCC-------CccceEEEeccceeEEEEEeCH-----HHHHHHHcCCCeEE
Q 041951 3 VYIVYMGSLPEGEYVTSSQHQNILQEVVVGRS-------VEDILVRSYRRSFNGFAAKLTV-----DERQKLASMEKVVS 70 (726)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~i~~~y~~~~~g~s~~l~~-----~~~~~L~~~p~V~~ 70 (726)
.|||+++.-.. +..|+.++++.+.... .....--.|-.-|.-+-++-.. -+++.|..+|.|+.
T Consensus 51 EyIv~F~~y~~-----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~ 125 (1033)
T KOG4266|consen 51 EYIVRFKQYKP-----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKV 125 (1033)
T ss_pred eeEEEeccccc-----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCcee
Confidence 69999986655 5568888888775221 1112233455556655555432 25799999999999
Q ss_pred EEeceeecccc---------------------------------c--CCc----------cccCCCccccccCCCCCCcE
Q 041951 71 VFPSRTLQLHT---------------------------------T--RSW----------DFMGLNLSITRKRSVESNLI 105 (726)
Q Consensus 71 v~~~~~~~~~~---------------------------------~--~s~----------~~~g~~~~~~~~~~~G~GVv 105 (726)
|.|.+.+..-. + .+. +.++++ -+|+.|+||++|+
T Consensus 126 v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad-~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 126 VFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD-HLWKKGYTGAKVK 204 (1033)
T ss_pred ecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-hHHhccccCCceE
Confidence 99876654210 0 001 113334 7899999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCCCc
Q 041951 106 VGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDAS 185 (726)
Q Consensus 106 VaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~~~ 185 (726)
|||.|||+.-.||-|+.- ....++..+ ....|..||||.|||+|||.. .
T Consensus 205 vAiFDTGl~~~HPHFrnv-------------------------KERTNWTNE--~tLdD~lgHGTFVAGvia~~~----e 253 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRNV-------------------------KERTNWTNE--DTLDDNLGHGTFVAGVIAGRN----E 253 (1033)
T ss_pred EEEeecccccCCccccch-------------------------hhhcCCcCc--cccccCcccceeEeeeeccch----h
Confidence 999999999999999832 001111111 345678899999999999873 1
Q ss_pred cccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcE
Q 041951 186 FYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVL 264 (726)
Q Consensus 186 ~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~ 264 (726)
. .|.||+++|+++|||.+.. ..++.+++|+.||+...+||+|+|+|++ .+.+.|+-.-+.+...++|+
T Consensus 254 c--------~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvI 322 (1033)
T KOG4266|consen 254 C--------LGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVI 322 (1033)
T ss_pred h--------cccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEE
Confidence 1 7889999999999998766 7889999999999999999999999999 67788887777788899999
Q ss_pred EEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCC
Q 041951 265 TLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSS 340 (726)
Q Consensus 265 vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 340 (726)
+|.|+||+|+-.. |+....+|.||...
T Consensus 323 MvSAiGNDGPLYGTLNNPaDQsDViGVGGId------------------------------------------------- 353 (1033)
T KOG4266|consen 323 MVSAIGNDGPLYGTLNNPADQSDVIGVGGID------------------------------------------------- 353 (1033)
T ss_pred EEEecCCCCcceeecCCcccccceeeecccc-------------------------------------------------
Confidence 9999999998764 33333444444321
Q ss_pred CCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhh
Q 041951 341 QECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYIL 420 (726)
Q Consensus 341 ~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~ 420 (726)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCC----CCCCCccCceEeCCCcEEeecCC
Q 041951 421 RKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNA----IVPEILKPDISAPGVDILAAFSP 496 (726)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~----~~~~~~KPDI~APG~~I~sa~~~ 496 (726)
..+.++.|||||-+. ...|++||||++.|.+|......
T Consensus 354 --------------------------------------fdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~ 395 (1033)
T KOG4266|consen 354 --------------------------------------FDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS 395 (1033)
T ss_pred --------------------------------------ccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc
Confidence 125689999999764 35899999999999999865544
Q ss_pred CccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----cCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCC
Q 041951 497 LAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHV 572 (726)
Q Consensus 497 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~i 572 (726)
.+...+||||.|+|.|||+++||.+ +.--++|+.+|++|+.+|.+++... -+.||+|++
T Consensus 396 -------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N----MfEQGaGkl 458 (1033)
T KOG4266|consen 396 -------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN----MFEQGAGKL 458 (1033)
T ss_pred -------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc----hhhccCcch
Confidence 5678999999999999999999976 2344699999999999999998862 579999999
Q ss_pred CccccCCC
Q 041951 573 NPVKAINP 580 (726)
Q Consensus 573 n~~~Al~~ 580 (726)
|+.++.+-
T Consensus 459 dLL~syqi 466 (1033)
T KOG4266|consen 459 DLLESYQI 466 (1033)
T ss_pred hHHHHHHH
Confidence 99998863
|
|
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=326.45 Aligned_cols=241 Identities=25% Similarity=0.346 Sum_probs=183.9
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhcccc
Q 041951 100 VESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGN 179 (726)
Q Consensus 100 ~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~ 179 (726)
+|+||+|||||+||+++||+|.+......... ...........|..+|||||||||+|+
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~HGT~vagiiag~ 59 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYV---------------------AVNDAGYASNGDGDSHGTHVAGVIAAA 59 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccccc---------------------ccccccCCCCCCCCChHHHHHHHHhcC
Confidence 69999999999999999999986421110000 000001134557889999999999998
Q ss_pred CCCCCccccccccceeeecCCcEEEEEEeeCCCC--CChHHHHHHHHHHhhCCCcEEEEcccCCCCCC-----------C
Q 041951 180 EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG--CDSAGVLGAFDDAIADGVDVITISIGGDSAVD-----------F 246 (726)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~-----------~ 246 (726)
... ....|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||...... .
T Consensus 60 ~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~ 130 (267)
T cd04848 60 RDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAAT 130 (267)
T ss_pred cCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccc
Confidence 532 2238999999999999998764 56677899999999999999999999884221 2
Q ss_pred cccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEecc
Q 041951 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINS 315 (726)
Q Consensus 247 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 315 (726)
....+...+..+.++|+++|+||||++.... +...+++|+||+.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~--------------------- 189 (267)
T cd04848 131 QGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG--------------------- 189 (267)
T ss_pred cchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC---------------------
Confidence 4455667777888999999999999987543 23346788888764331
Q ss_pred CCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCE
Q 041951 316 FAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPA 395 (726)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~ 395 (726)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeec--ccCCCCCC
Q 041951 396 VAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVG--FSSRGPNA 473 (726)
Q Consensus 396 ~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSS~Gp~~ 473 (726)
.... ||++|+..
T Consensus 190 ------------------------------------------------------------------~~~~~~~s~~~~~~ 203 (267)
T cd04848 190 ------------------------------------------------------------------TIASYSYSNRCGVA 203 (267)
T ss_pred ------------------------------------------------------------------Ccccccccccchhh
Confidence 1222 47777643
Q ss_pred CCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 474 IVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 474 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
-.++++|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 204 -----~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 -----ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred -----hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 1347999999999987631 157889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=318.21 Aligned_cols=352 Identities=24% Similarity=0.327 Sum_probs=230.4
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCC-C--CChHHHHHHHHHHhhCCCcEEEEcccCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPG-G--CDSAGVLGAFDDAIADGVDVITISIGGDS 242 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~ 242 (726)
..|||||||||+|+..+.. ...|+||+|+|+.+++.+.. | -+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 4599999999999975432 23788999999999996542 2 45567899999999999999999999885
Q ss_pred CCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCC
Q 041951 243 AVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFA 317 (726)
Q Consensus 243 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (726)
..+.....++..-..+.++|+++|+||||+|+... +.....+|.|||.-......
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~-------------------- 441 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ-------------------- 441 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH--------------------
Confidence 44444444544443445889999999999999876 22223677777643221000
Q ss_pred CCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEE
Q 041951 318 MKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVA 397 (726)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~ 397 (726)
T Consensus 442 -------------------------------------------------------------------------------- 441 (1304)
T KOG1114|consen 442 -------------------------------------------------------------------------------- 441 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCC
Q 041951 398 VSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPE 477 (726)
Q Consensus 398 i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 477 (726)
...+.. ..-...+..+|||||+. ||
T Consensus 442 -------a~y~~~----------------------------------------------e~vp~~~YtWsSRgP~~--DG 466 (1304)
T KOG1114|consen 442 -------AEYSVR----------------------------------------------EPVPSNPYTWSSRGPCL--DG 466 (1304)
T ss_pred -------hhhhhh----------------------------------------------ccCCCCccccccCCCCc--CC
Confidence 000000 01124467899999998 99
Q ss_pred CccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----cCCCCCHHHHHHHHHcccc
Q 041951 478 ILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 478 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~~TA~ 553 (726)
-+--.|.|||+.|.+--.-+. ..-..|+|||||+|+++|++|||++ .+-.+||..||.+|++||+
T Consensus 467 ~lGVsi~APggAiAsVP~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~ 535 (1304)
T KOG1114|consen 467 DLGVSISAPGGAIASVPQYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTAT 535 (1304)
T ss_pred CcceEEecCCccccCCchhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhccc
Confidence 999999999999865322211 4567899999999999999999955 5688999999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCccccCCCCceecCChhhHHHHHhh-CCCCCcceEEecCC-CCccCCCCCCCCCCCCCCCc
Q 041951 554 AMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCN-IGYDESKVRIISGD-GSACPKGSDKAPPKDLNYPS 631 (726)
Q Consensus 554 ~~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~~~~~~~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ln~ps 631 (726)
++++. .++.+|.|+|++.+|.+ ||. -+ ..| +..+.+|... ..+|...
T Consensus 536 ~l~~i----d~faqG~GmlqVdkAyE-----------yL~--q~~~~f-~~~l~f~~v~VgN~~srG------------- 584 (1304)
T KOG1114|consen 536 KLGDI----DSFAQGQGMLQVDKAYE-----------YLA--QSDFSF-PNALGFINVNVGNSCSRG------------- 584 (1304)
T ss_pred ccCcc----chhccCcceeehhHHHH-----------HHH--HhhhcC-CccceeEEEeeccccccc-------------
Confidence 99887 47999999999999975 221 00 011 1112222222 1234321
Q ss_pred EEEeecCCCceEEEEEEEE----EEcC---CCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCe
Q 041951 632 MAAQVSSGKSFVVNFPRTV----TNVG---VANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAI 704 (726)
Q Consensus 632 ~~~~~~~~~~~~~~~~rtv----~n~g---~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~ 704 (726)
|-+.+......+..++.-| .|-- .....|.+....-.-..+---|+.|-+ .++.+.+.|+|+++. ...+.
T Consensus 585 IyLRep~~~~~p~e~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~-l~~G~ 661 (1304)
T KOG1114|consen 585 IYLREPTQVCSPSEHTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTG-LAPGV 661 (1304)
T ss_pred eEecCCcccCCccccceeccccccCccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcC-CCCCc
Confidence 1121111000111122211 1110 011223332222111223334888888 667799999999987 56678
Q ss_pred EEEEEEEEc-----CCeeEEeEEEEE
Q 041951 705 VSASLVWSD-----GNHWVRSPIVVH 725 (726)
Q Consensus 705 ~~G~~~~~~-----~~~~v~~P~~v~ 725 (726)
+++.|.--| .+..+|||+.|.
T Consensus 662 hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 662 HYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred ceEEEEEeecCCcccCceEEeeeEEE
Confidence 888888654 568999999985
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=284.30 Aligned_cols=114 Identities=20% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHH--hhCCCcEEEEcc
Q 041951 161 TARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDA--IADGVDVITISI 238 (726)
Q Consensus 161 ~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A--~~~g~dVInlSl 238 (726)
...|..+|||||||||||. .|++|+++|+..++.. .....+.++++|+ .+.+++||||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 3557899999999999987 4567999999766522 1233466778887 667999999999
Q ss_pred cCCCCCC-----CcccHHHHHHHHhhhC-CcEEEEccCCCCCCCC-------CCCCCceEEEecccC
Q 041951 239 GGDSAVD-----FSEDAISIGAFHAMAK-GVLTLNSAGNSGPGLT-------ASVAPWLMSVAASTT 292 (726)
Q Consensus 239 G~~~~~~-----~~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~~-------~~~~p~vitVga~~~ 292 (726)
|...... ...+.+..+++.+.++ |+++|+||||+|.... |..++++|+|||++.
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~ 160 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDR 160 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecC
Confidence 9874332 1234566677776655 9999999999998431 667789999998653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=268.35 Aligned_cols=157 Identities=30% Similarity=0.430 Sum_probs=117.5
Q ss_pred cEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC--CCCCCCCCcCCcccchhhccccCC
Q 041951 104 LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA--PYDTARDEEGHGSHTASTASGNEV 181 (726)
Q Consensus 104 VvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~--~~~~~~D~~gHGThVAGiaag~~~ 181 (726)
|+|||||+|++++||+|.... .... ....+... ......+..+||||||++|++...
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~---------~~~~------------~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~ 59 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLF---------GGGD------------GGNDDDDNENGPTDPDDGNGHGTHVAGIIAASAN 59 (241)
T ss_pred CEEEEEeCCCCCCCcchhccc---------cCcc------------cccccccCcCCCCCCCCCCCcHHHHHHHHhcCCC
Confidence 689999999999999872110 0000 01111000 012455788999999999998853
Q ss_pred CCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHh-hCCCcEEEEcccCCCCCCCcccHHHHHHHHhh
Q 041951 182 KDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAI-ADGVDVITISIGGDSAVDFSEDAISIGAFHAM 259 (726)
Q Consensus 182 ~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~-~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~ 259 (726)
.. ...|+||+++|+.+|+....+ .....+++++++++ +.+++|||||||..... ....+...+..+.
T Consensus 60 ~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~~ 128 (241)
T cd00306 60 NG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYAL 128 (241)
T ss_pred CC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHHH
Confidence 21 117999999999999987765 67788999999999 89999999999998322 3456677777787
Q ss_pred hC-CcEEEEccCCCCCCCC-----CCCCCceEEEecccC
Q 041951 260 AK-GVLTLNSAGNSGPGLT-----ASVAPWLMSVAASTT 292 (726)
Q Consensus 260 ~~-Gv~vV~AAGN~g~~~~-----~~~~p~vitVga~~~ 292 (726)
++ |+++|+||||.+.... ++..+++|+||+++.
T Consensus 129 ~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~ 167 (241)
T cd00306 129 AKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDR 167 (241)
T ss_pred HhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCc
Confidence 77 9999999999987763 778899999998654
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=239.03 Aligned_cols=266 Identities=29% Similarity=0.426 Sum_probs=195.5
Q ss_pred ccccc--CCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCC-CCCCCcCCc
Q 041951 93 SITRK--RSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYD-TARDEEGHG 169 (726)
Q Consensus 93 ~~~~~--~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~-~~~D~~gHG 169 (726)
..|.. +.+|+||.|+|||+||+..||+|.+... ..++|..+... ...|..+||
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~d~~~hG 186 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV------------------------AGGDFVDGDPEPPFLDDNGHG 186 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc------------------------cccccccCCCCCCCCCCCCCc
Confidence 67887 9999999999999999999999986421 00222111111 257899999
Q ss_pred ccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCC-C-CChHHHHHHHHHHhhCC--CcEEEEcccCCCCCC
Q 041951 170 SHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPG-G-CDSAGVLGAFDDAIADG--VDVITISIGGDSAVD 245 (726)
Q Consensus 170 ThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g-~~~~~i~~ai~~A~~~g--~dVInlSlG~~~~~~ 245 (726)
|||+|++++... .+..+ ..|+||+++++.++++... + ....+++++++++++.+ +++||||+|.. ...
T Consensus 187 t~vag~ia~~~~--~~~~~-----~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~~~ 258 (508)
T COG1404 187 THVAGTIAAVIF--DNGAG-----VAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-LSD 258 (508)
T ss_pred ceeeeeeeeecc--cCCCc-----cccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-ccc
Confidence 999999998421 11112 3899999999999999865 5 66777899999999999 99999999986 233
Q ss_pred CcccHHHHHHHHhhhCC-cEEEEccCCCCCCCC------CCCCC--ceEEEecccCCceeeeEEEeCCCeeEeeEEeccC
Q 041951 246 FSEDAISIGAFHAMAKG-VLTLNSAGNSGPGLT------ASVAP--WLMSVAASTTDRLFVDKVALGNGKAISGYSINSF 316 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~G-v~vV~AAGN~g~~~~------~~~~p--~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 316 (726)
.....+..++..+...| +++|+++||.+.... |...+ .+++|++...
T Consensus 259 ~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------------------ 314 (508)
T COG1404 259 SASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------------------ 314 (508)
T ss_pred cccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC------------------------
Confidence 34455666667777666 999999999987651 22222 4444444221
Q ss_pred CCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEE
Q 041951 317 AMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAV 396 (726)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~ 396 (726)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCC
Q 041951 397 AVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVP 476 (726)
Q Consensus 397 ~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 476 (726)
...++.||++|+..
T Consensus 315 ---------------------------------------------------------------~~~~~~~s~~g~~~--- 328 (508)
T COG1404 315 ---------------------------------------------------------------SDTVASFSNDGSPT--- 328 (508)
T ss_pred ---------------------------------------------------------------CCccccccccCCCC---
Confidence 14567889999741
Q ss_pred CCccCceEeCCCcEEe-----ecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCC-CCCHHHHHHHHHc
Q 041951 477 EILKPDISAPGVDILA-----AFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHP-DWSPSAIKSAIMT 550 (726)
Q Consensus 477 ~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~ls~~~ik~~L~~ 550 (726)
..+++|||.+|.+ .++.. ...|..++|||||+|||+|++||+++.+| .+++.+++..+..
T Consensus 329 ---~~~~~apg~~i~~~~~~~~~~~~-----------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~ 394 (508)
T COG1404 329 ---GVDIAAPGVNILSLSAVNTLPGD-----------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVT 394 (508)
T ss_pred ---CcceeCCCccccccccceeeeCC-----------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhh
Confidence 2299999999987 33331 02499999999999999999999999999 8999999999998
Q ss_pred cccc--cCCCCCCCCCcccCCCCCCccccCC
Q 041951 551 TAWA--MNSSKNTEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 551 TA~~--~~~~~~~~~~~~~G~G~in~~~Al~ 579 (726)
++.. ... ....++.|..+...+..
T Consensus 395 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 395 TAGLTPLSG-----VDNLVGGGLANLDAAAT 420 (508)
T ss_pred ccccccCCc-----cccccccCccccccccc
Confidence 8874 222 24567777666666554
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-19 Score=184.54 Aligned_cols=169 Identities=13% Similarity=0.198 Sum_probs=107.2
Q ss_pred cccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCC-CcCCccc
Q 041951 93 SITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARD-EEGHGSH 171 (726)
Q Consensus 93 ~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D-~~gHGTh 171 (726)
++|..+++|++|.+||+|.||||.|||+..+ +. .+..++|..|+.+.+-++. .| .+.|||.
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n-yn---------aeasydfssndpfpypryt--------ddwfnshgtr 213 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-YN---------AEASYDFSSNDPFPYPRYT--------DDWFNSHGTR 213 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc-cC---------ceeecccccCCCCCCCccc--------chhhhccCcc
Confidence 8999999999999999999999999999843 10 1222333333222211111 12 5789999
Q ss_pred chhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh-CCCcEEEEcccCCCCCCCcccH
Q 041951 172 TASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA-DGVDVITISIGGDSAVDFSEDA 250 (726)
Q Consensus 172 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~-~g~dVInlSlG~~~~~~~~~~~ 250 (726)
|||-+++...+ +..| .|||.+.++.-+|+++. .+-.|+++|-...-+ ...+|.+-|||........+.|
T Consensus 214 cagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgktvdgp 283 (629)
T KOG3526|consen 214 CAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGP 283 (629)
T ss_pred ccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCc
Confidence 99988766532 2333 69999999999999854 344555554332211 3478999999987433333332
Q ss_pred ---HHHHHHHhh-----hCCcEEEEccCCCCCCCC-----CCCCCceEEEec
Q 041951 251 ---ISIGAFHAM-----AKGVLTLNSAGNSGPGLT-----ASVAPWLMSVAA 289 (726)
Q Consensus 251 ---~~~a~~~a~-----~~Gv~vV~AAGN~g~~~~-----~~~~p~vitVga 289 (726)
...++.+-+ ..|-++|.|.|..|.... .+.+-|.|++-+
T Consensus 284 rnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 284 RNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred hhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 222333322 347789999998887654 233346666643
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=174.32 Aligned_cols=99 Identities=26% Similarity=0.273 Sum_probs=79.0
Q ss_pred ceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhC---CCcEEEEcccCCCCC--CCcccHHHHHHHHhhhCCcEEEE
Q 041951 193 TARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIAD---GVDVITISIGGDSAV--DFSEDAISIGAFHAMAKGVLTLN 267 (726)
Q Consensus 193 ~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~---g~dVInlSlG~~~~~--~~~~~~~~~a~~~a~~~Gv~vV~ 267 (726)
.+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||+|||..... ....+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997542 45677888888877 999999999988321 11235667777888899999999
Q ss_pred ccCCCCCCCC-------------CCCCCceEEEecccCCc
Q 041951 268 SAGNSGPGLT-------------ASVAPWLMSVAASTTDR 294 (726)
Q Consensus 268 AAGN~g~~~~-------------~~~~p~vitVga~~~~~ 294 (726)
|+||+|.... |+.+||+++||+++...
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999987641 78899999999987653
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-09 Score=89.73 Aligned_cols=77 Identities=31% Similarity=0.446 Sum_probs=57.1
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHhc----C-CCCccceEEEeccceeEEEEEeCHHHHHHHHcCCCeEEEEeceee
Q 041951 3 VYIVYMGSLPEGEYVTSSQHQNILQEVVV----G-RSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTL 77 (726)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~l~~~~~----~-~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~ 77 (726)
+|||.|+++.... ...+.|.+++.+++. . .....++.+.|+..||||+++++++++++|+++|+|++|+|++.+
T Consensus 1 ~YIV~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v 79 (82)
T PF05922_consen 1 RYIVVFKDDASAA-SSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVV 79 (82)
T ss_dssp EEEEEE-TTSTHH-CHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEE
T ss_pred CEEEEECCCCCcc-hhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceE
Confidence 6999999886521 225567777765433 1 346789999998899999999999999999999999999999988
Q ss_pred ccc
Q 041951 78 QLH 80 (726)
Q Consensus 78 ~~~ 80 (726)
+++
T Consensus 80 ~l~ 82 (82)
T PF05922_consen 80 SLH 82 (82)
T ss_dssp EE-
T ss_pred ecC
Confidence 764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-08 Score=89.96 Aligned_cols=110 Identities=38% Similarity=0.606 Sum_probs=87.3
Q ss_pred EEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEee------ccchHHHHhcC
Q 041951 300 VALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS------FKNYPEVRKAG 373 (726)
Q Consensus 300 ~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~------~~~~~~~~~~G 373 (726)
++++||+.+.|++++.... ..+++++..... .......|.+..+...+++||||+|++ .++..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~---~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS---GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC---CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999997554 456777633311 234557899888888899999999987 24577889999
Q ss_pred ceEEEEeccCCCccc---eeeecCEEEeehhhHHHHHHHHhcCc
Q 041951 374 AAGTVLLNNEFDKVS---FVVSLPAVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 374 ~~g~i~~~~~~~~~~---~~~~~p~~~i~~~~g~~l~~~~~~~~ 414 (726)
|.|+|++++...... ....+|.+.|..++|..|++|++++.
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~ 120 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTS 120 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCC
Confidence 999999988765432 23679999999999999999999877
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.68 E-value=9e-08 Score=90.43 Aligned_cols=108 Identities=30% Similarity=0.419 Sum_probs=79.9
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCccce----e
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKVSF----V 390 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~~~----~ 390 (726)
..+.+++|.+. |....+...+++|||++|+| .+|..+++++||.++|++++....... .
T Consensus 25 ~~~~~lv~~g~------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~ 92 (143)
T cd02133 25 GKTYELVDAGL------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEA 92 (143)
T ss_pred CcEEEEEEccC------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCC
Confidence 45778888654 33344556689999999987 568889999999999999888653311 2
Q ss_pred eecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEE-ecceeecCCCCCeeecccCC
Q 041951 391 VSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEI-LKTEAVKDFDAPVVVGFSSR 469 (726)
Q Consensus 391 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSS~ 469 (726)
..+|+++|+..+|..|++++++ . +++ +..+.. ..+++.++.||||
T Consensus 93 ~~iP~v~Is~~dG~~L~~~l~~-~--------------------------------~~i~~~~~~~-~~~~p~va~fSsr 138 (143)
T cd02133 93 VFIPVVFISKEDGEALKAALES-S--------------------------------KKLTFNTKKE-KATNPDLADFSSR 138 (143)
T ss_pred CeEeEEEecHHHHHHHHHHHhC-C--------------------------------CeEEEEeccc-cccCCccccccCc
Confidence 4689999999999999999865 2 223 233333 3566789999999
Q ss_pred CCCC
Q 041951 470 GPNA 473 (726)
Q Consensus 470 Gp~~ 473 (726)
||..
T Consensus 139 gp~g 142 (143)
T cd02133 139 GPWG 142 (143)
T ss_pred CCCC
Confidence 9963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-06 Score=78.05 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=60.4
Q ss_pred EEEeecCCCceEEEEEEEEEEcCCCCeeEEEEEec--------CCc----------e-EEEEEcCEEEEeeCCcEEEEEE
Q 041951 632 MAAQVSSGKSFVVNFPRTVTNVGVANSTYRAKVLQ--------NSK----------I-SIKVVPDVLSFKSLNEKKSFSV 692 (726)
Q Consensus 632 ~~~~~~~~~~~~~~~~rtv~n~g~~~~ty~~~~~~--------~~g----------~-~v~v~p~~l~~~~~g~~~~~~v 692 (726)
|+|.+.. ...+++.||+|.|+.+.+|+++... ..| . .+...|.+|++ ++|++++|+|
T Consensus 1 i~L~d~~---~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTG---NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE----SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccC---CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 3455553 2578999999999999999998661 011 1 57778899999 8999999999
Q ss_pred EEEeec---CCCCCeEEEEEEEEc-CCe-eEEeEEE
Q 041951 693 TVTGKG---VPQGAIVSASLVWSD-GNH-WVRSPIV 723 (726)
Q Consensus 693 t~~~~~---~~~~~~~~G~~~~~~-~~~-~v~~P~~ 723 (726)
+++++. .....+++|+|.+++ .++ .+++||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 999965 244679999999996 444 8999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-06 Score=100.38 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=87.4
Q ss_pred cccccCCCCCCcEEEEEe-ccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCccc
Q 041951 93 SITRKRSVESNLIVGVID-TGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSH 171 (726)
Q Consensus 93 ~~~~~~~~G~GVvVaVID-tGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGTh 171 (726)
.+++.+.+|+|+.||||| -|-.+...|+.- -|+.. |-.-..+.++. +.+ -..+|+||
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~--------Fd~~~---Gip~~~~~~V~----~ig-------~g~~~~~~ 276 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYS--------FDQQY---GIPNPILSRVT----YIG-------PGIGSGTG 276 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHH--------HHHhh---CCCCCCceEEE----EeC-------CCCCCCCC
Confidence 455668899999999999 665444433320 01000 00000011111 100 24567777
Q ss_pred chhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCC-cEEEEcccCCC--CCCC--
Q 041951 172 TASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGV-DVITISIGGDS--AVDF-- 246 (726)
Q Consensus 172 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~-dVInlSlG~~~--~~~~-- 246 (726)
=+.=+ -+.-....-+||+|+|..|-.- ......+..|+.+-...-+ -+|-+||+... ...+
T Consensus 277 g~~E~-----------sLDVE~s~A~AP~A~I~lvvap---~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~ 342 (1174)
T COG4934 277 GAEET-----------SLDVEWSHAMAPKANIDLVVAP---NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPG 342 (1174)
T ss_pred ccccc-----------eeehhhhhccCccCceEEEEcC---CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChH
Confidence 55311 1122234678999999998661 1222333333333322211 33335666431 1222
Q ss_pred cccHHHHHHHHhhhCCcEEEEccCCCCCCCC----------CCCCCceEEEec
Q 041951 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----------ASVAPWLMSVAA 289 (726)
Q Consensus 247 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----------~~~~p~vitVga 289 (726)
.-+.+......|..+|+.+++|+|.+|.... |+.+|++.+||.
T Consensus 343 ~~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 343 YADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 2233444445677899999999999976552 889999999997
|
|
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.5e-06 Score=94.39 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=98.9
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecC--CCCC---CCC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYT--PAPY---DTA 162 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~--~~~~---~~~ 162 (726)
+.+. ..|..+++|+++.++|.|+|++..||+..+. +. ..+..++. +++. .+.
T Consensus 20 ~~v~-~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~---------------------~~~s~d~~~~~~~p~~~~~~ 76 (431)
T KOG3525|consen 20 LNVQ-NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YD---------------------PLGSYDVNRHDNDPEPRCDG 76 (431)
T ss_pred ceee-eccccCCCCCceEEEEeeccccccCcccccc-cC---------------------cceeEeeecCCCCcccccCC
Confidence 4445 8999999999999999999999999999843 11 22333331 1111 122
Q ss_pred CCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh-CCCcEEEEcccCC
Q 041951 163 RDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA-DGVDVITISIGGD 241 (726)
Q Consensus 163 ~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~-~g~dVInlSlG~~ 241 (726)
.....|||-||+-.+..... . --..|+++++++..++++.. ...+...+...... .-+++-..|||..
T Consensus 77 ~~~~~~g~~Ca~~~a~~~~~---~-----~C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw~pd 145 (431)
T KOG3525|consen 77 TNENKHGTRCAGCVAARANN---L-----TCGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSWGPD 145 (431)
T ss_pred CCccccCCCCCcccccccCC---C-----cCCCCcccCccccceeeeee---ecccceecccccCCCCCceeecCcCCcc
Confidence 23578999999999877411 1 11278999999999999742 11133333332222 3578999999977
Q ss_pred CCCCCcc---cHHHHHHHH-----hhhCCcEEEEccCCCCCCCC
Q 041951 242 SAVDFSE---DAISIGAFH-----AMAKGVLTLNSAGNSGPGLT 277 (726)
Q Consensus 242 ~~~~~~~---~~~~~a~~~-----a~~~Gv~vV~AAGN~g~~~~ 277 (726)
......+ .....+... ...+|-+.+++.||.|....
T Consensus 146 dd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 146 DDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 4222111 122222232 33678899999999887653
|
|
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.2e-05 Score=70.90 Aligned_cols=71 Identities=31% Similarity=0.478 Sum_probs=56.2
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCC-------ccceeeecCEEEeehhhHHHHH
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFD-------KVSFVVSLPAVAVSQDSLSSLI 407 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~-------~~~~~~~~p~~~i~~~~g~~l~ 407 (726)
...|.+......+++||||+|+| .+|..+++++||.|+|+++.... .......+|+++|+..+|..|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45577777888899999999988 67899999999999999992111 1134578999999999999999
Q ss_pred HHH
Q 041951 408 SYK 410 (726)
Q Consensus 408 ~~~ 410 (726)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 875
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.7e-05 Score=69.28 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=62.7
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc-------c-eeeecCEEEeehhhHHHH
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV-------S-FVVSLPAVAVSQDSLSSL 406 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~-------~-~~~~~p~~~i~~~~g~~l 406 (726)
..+|.+..+...+++|||++|+| .+|..+++++|+.++|++|+..... . ....+|.++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 47899888877889999999998 5688999999999999998876321 1 234689999999999999
Q ss_pred HHHHhcCc
Q 041951 407 ISYKESTK 414 (726)
Q Consensus 407 ~~~~~~~~ 414 (726)
++++..+.
T Consensus 109 ~~~l~~g~ 116 (122)
T cd04816 109 RRRLGAGE 116 (122)
T ss_pred HHHHcCCC
Confidence 99998776
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=66.88 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=60.9
Q ss_pred CCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCccc-------eeeecCEEEeehhhHHHH
Q 041951 339 SSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKVS-------FVVSLPAVAVSQDSLSSL 406 (726)
Q Consensus 339 ~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~~-------~~~~~p~~~i~~~~g~~l 406 (726)
....|.+.... .+++|||++|+| .+|..+++++|+.|+|++++...... ....+|+++|+.++|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45679888774 459999999987 46788999999999999988764221 234699999999999999
Q ss_pred HHHHhcCc
Q 041951 407 ISYKESTK 414 (726)
Q Consensus 407 ~~~~~~~~ 414 (726)
+.|++.+.
T Consensus 105 ~~~l~~g~ 112 (118)
T cd04818 105 KAALAAGG 112 (118)
T ss_pred HHHHhcCC
Confidence 99998765
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=66.61 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=67.4
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc-------c
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV-------S 388 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~-------~ 388 (726)
..+|++... ...+|.+..+...+++|+|++++| .+|..+++++||.++||+|+..... .
T Consensus 20 ~~~~~~~~~---------~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~ 90 (120)
T cd02129 20 TLLPLRNLT---------SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEY 90 (120)
T ss_pred cceeeecCC---------CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Confidence 346666643 346799888877889999999998 7899999999999999999986311 1
Q ss_pred eeeecCEEEeehhhHHHHHHHHhcC
Q 041951 389 FVVSLPAVAVSQDSLSSLISYKEST 413 (726)
Q Consensus 389 ~~~~~p~~~i~~~~g~~l~~~~~~~ 413 (726)
....||+++|+..+|..|.+.+..+
T Consensus 91 ~~v~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 91 EKIDIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred cCCcccEEEEeHHHHHHHHHHhccC
Confidence 3456899999999999998877654
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00054 Score=62.80 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=59.0
Q ss_pred CCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCC-Ccc------ceeeecCEEEeehhhHHHHHH
Q 041951 341 QECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEF-DKV------SFVVSLPAVAVSQDSLSSLIS 408 (726)
Q Consensus 341 ~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~-~~~------~~~~~~p~~~i~~~~g~~l~~ 408 (726)
..|.+..+ +.+++|||++++| .+|..+++++||.++|++|+.. ... .....+|.+.|+.++|..|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46876554 3579999999998 5789999999999999998873 221 123469999999999999999
Q ss_pred HHhcCc
Q 041951 409 YKESTK 414 (726)
Q Consensus 409 ~~~~~~ 414 (726)
.+..+.
T Consensus 111 ~l~~g~ 116 (122)
T cd02130 111 ALANGG 116 (122)
T ss_pred HHhcCC
Confidence 998876
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00026 Score=66.12 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCCCcCCCCC--CCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCC-Ccc------ceeeecCEEEeehhhHH
Q 041951 339 SSQECNPGCV--NGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEF-DKV------SFVVSLPAVAVSQDSLS 404 (726)
Q Consensus 339 ~~~~c~~~~~--~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~-~~~------~~~~~~p~~~i~~~~g~ 404 (726)
...+|.+... ...++.|+|+|++| .+|..+++++||.++|++|+.. ... .....+|.++|+..+|.
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998776 56789999999998 6889999999999999999986 211 11236899999999999
Q ss_pred HHHHHHhcCc
Q 041951 405 SLISYKESTK 414 (726)
Q Consensus 405 ~l~~~~~~~~ 414 (726)
.|++.+..+.
T Consensus 123 ~l~~~l~~G~ 132 (138)
T cd02122 123 EILELLERGI 132 (138)
T ss_pred HHHHHHHcCC
Confidence 9999998876
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00031 Score=63.82 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=60.4
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCc-c----------ceeeecCEEEeehhhH
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDK-V----------SFVVSLPAVAVSQDSL 403 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~-~----------~~~~~~p~~~i~~~~g 403 (726)
..+|.+... ..+++|+|++++| .+|..+++++||.++|++|+.... . .....||.++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 5679999999998 688999999999999999976531 1 1234689999999999
Q ss_pred HHHHHHHhcCc
Q 041951 404 SSLISYKESTK 414 (726)
Q Consensus 404 ~~l~~~~~~~~ 414 (726)
..|++.+..+.
T Consensus 100 ~~L~~~l~~g~ 110 (118)
T cd02127 100 YMIRKTLERLG 110 (118)
T ss_pred HHHHHHHHcCC
Confidence 99999998877
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00024 Score=65.20 Aligned_cols=76 Identities=33% Similarity=0.400 Sum_probs=61.9
Q ss_pred CCCCcCCCC--CCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc----c-----eeeecCEEEeehhh
Q 041951 339 SSQECNPGC--VNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV----S-----FVVSLPAVAVSQDS 402 (726)
Q Consensus 339 ~~~~c~~~~--~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~----~-----~~~~~p~~~i~~~~ 402 (726)
....|.+.. +...+++||||+|++ .+|..+++++|+.|+|++++..... . ....+|.+.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345687776 667889999999987 4688899999999999998876321 1 23579999999999
Q ss_pred HHHHHHHHhcCc
Q 041951 403 LSSLISYKESTK 414 (726)
Q Consensus 403 g~~l~~~~~~~~ 414 (726)
|..|+.++.++.
T Consensus 109 g~~l~~~~~~~~ 120 (126)
T cd00538 109 GEALLSLLEAGK 120 (126)
T ss_pred HHHHHHHHhcCC
Confidence 999999998766
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00034 Score=63.43 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=59.4
Q ss_pred cCCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCc-c--------ceeeecCEEEeehhhH
Q 041951 338 LSSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDK-V--------SFVVSLPAVAVSQDSL 403 (726)
Q Consensus 338 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~-~--------~~~~~~p~~~i~~~~g 403 (726)
....+|.+. +..+++|||++++| .+|..+++++||.++|++|+.... . .....+|+++++..++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345689766 55789999999998 688999999999999999877642 1 2234789999999999
Q ss_pred HHHHHHHhcC
Q 041951 404 SSLISYKEST 413 (726)
Q Consensus 404 ~~l~~~~~~~ 413 (726)
.+|..++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9998876654
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=60.55 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=59.5
Q ss_pred cCCCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc----ceeeecCEEEeehhhHHHHHH
Q 041951 338 LSSQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV----SFVVSLPAVAVSQDSLSSLIS 408 (726)
Q Consensus 338 ~~~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~~ 408 (726)
....+|.+...+..+++|+|++++| .+|..+++++|+.++|++|+..... .....+|.+.+ ..+|..|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 4457899876666689999999998 5889999999999999998876432 22233565656 999999999
Q ss_pred HHhcCc
Q 041951 409 YKESTK 414 (726)
Q Consensus 409 ~~~~~~ 414 (726)
.+..+.
T Consensus 118 ~l~~G~ 123 (129)
T cd02124 118 ALAAGS 123 (129)
T ss_pred HHhcCC
Confidence 988775
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00046 Score=63.61 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=59.8
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCc------c------c---eeeecCEEEee
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDK------V------S---FVVSLPAVAVS 399 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~------~------~---~~~~~p~~~i~ 399 (726)
...|.+... +.+++|||++++| .+|..+++++|+.++|++|+.... . . ....||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 5568999999998 678999999999999999876532 1 1 13578999999
Q ss_pred hhhHHHHHHHHhcCc
Q 041951 400 QDSLSSLISYKESTK 414 (726)
Q Consensus 400 ~~~g~~l~~~~~~~~ 414 (726)
..+|..|+..+..+.
T Consensus 106 ~~dG~~L~~~l~~~~ 120 (126)
T cd02126 106 SKEGSKLLAAIKEHQ 120 (126)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999988765
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00082 Score=63.07 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=59.2
Q ss_pred CCCcCCCCCCCCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCccc---------eeeecCEEEeehhhHHH
Q 041951 340 SQECNPGCVNGSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKVS---------FVVSLPAVAVSQDSLSS 405 (726)
Q Consensus 340 ~~~c~~~~~~~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~~---------~~~~~p~~~i~~~~g~~ 405 (726)
.+.|.+.. .+++|+|++++| .+|..+++++||.++|++|+...... ....||+++|+..+|..
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798765 368999999999 68899999999999999987753211 13478999999999999
Q ss_pred HHHHHhcCc
Q 041951 406 LISYKESTK 414 (726)
Q Consensus 406 l~~~~~~~~ 414 (726)
|++.+..+.
T Consensus 125 L~~~l~~g~ 133 (139)
T cd02132 125 LNKSLDQGK 133 (139)
T ss_pred HHHHHHcCC
Confidence 999998776
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00092 Score=62.32 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=52.8
Q ss_pred CCCCcccccEEEEee----------ccchHHHHhcCceEEEEeccC--CCcc----c---eeeecCEEEeehhhHHHHHH
Q 041951 348 VNGSLVKGKIVICQS----------FKNYPEVRKAGAAGTVLLNNE--FDKV----S---FVVSLPAVAVSQDSLSSLIS 408 (726)
Q Consensus 348 ~~~~~~~gkiv~~~~----------~~~~~~~~~~G~~g~i~~~~~--~~~~----~---~~~~~p~~~i~~~~g~~l~~ 408 (726)
+.+.+++|||+|++| .+|..+++++||.++|+||+. .... . ....+|++.|+..+|..|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 445679999999988 256889999999999999998 3321 1 13579999999999999998
Q ss_pred HHhcC
Q 041951 409 YKEST 413 (726)
Q Consensus 409 ~~~~~ 413 (726)
.+..+
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 87544
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=60.83 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=59.5
Q ss_pred CCCcCCCCCC--CC----cccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc--------------ceeeecC
Q 041951 340 SQECNPGCVN--GS----LVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV--------------SFVVSLP 394 (726)
Q Consensus 340 ~~~c~~~~~~--~~----~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~--------------~~~~~~p 394 (726)
..+|.+.... +. ...++|++++| .+|..+++++||.++|++|+..... .....+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578876543 22 37789999999 6899999999999999999876421 1134689
Q ss_pred EEEeehhhHHHHHHHHhcCc
Q 041951 395 AVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 395 ~~~i~~~~g~~l~~~~~~~~ 414 (726)
+++|+..+|..|+..+..+.
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~ 121 (127)
T cd02125 102 SALITKAFGEKLKKAISNGE 121 (127)
T ss_pred EEEECHHHHHHHHHHHhcCC
Confidence 99999999999999998876
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=62.94 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=62.0
Q ss_pred CCCcCCCCCCC---CcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc-------c--eeeecCEEEeehhh
Q 041951 340 SQECNPGCVNG---SLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV-------S--FVVSLPAVAVSQDS 402 (726)
Q Consensus 340 ~~~c~~~~~~~---~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~-------~--~~~~~p~~~i~~~~ 402 (726)
.++|.+....+ .++.|+|++++| .+|..+++++||.++|++|+..... . ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798776544 789999999998 6899999999999999999875432 1 14579999999999
Q ss_pred HHHHHHHHhcCc
Q 041951 403 LSSLISYKESTK 414 (726)
Q Consensus 403 g~~l~~~~~~~~ 414 (726)
|..|+.++...+
T Consensus 130 g~~L~~~l~~~~ 141 (153)
T cd02123 130 GEILKKYASYEK 141 (153)
T ss_pred HHHHHHHHhcCC
Confidence 999999988765
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0048 Score=56.93 Aligned_cols=83 Identities=23% Similarity=0.199 Sum_probs=62.1
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeec-------cchHHHHhcCceEEEEeccCCCccc----
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSF-------KNYPEVRKAGAAGTVLLNNEFDKVS---- 388 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~-------~~~~~~~~~G~~g~i~~~~~~~~~~---- 388 (726)
..+.++++.+... +..+...+++|||+++++. +|..+++++||.|+|++++......
T Consensus 22 ~~~~~lV~~g~G~------------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 22 EAKGEPVDAGYGL------------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred CeeEEEEEeCCCC------------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 4567888866432 1223355799999999882 4678999999999999987765321
Q ss_pred ------eeeecCEEEeehhhHHHHHHHHhcCc
Q 041951 389 ------FVVSLPAVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 389 ------~~~~~p~~~i~~~~g~~l~~~~~~~~ 414 (726)
....+|.+.|+.+++..|...++.+.
T Consensus 90 ~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 90 EGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 12469999999999999999888765
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.086 Score=46.36 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=60.5
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEcCCeeEEeEE
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSDGNHWVRSPI 722 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~P~ 722 (726)
..+.+.+|+|.|..+..|++.........++++|..-.+ ++|++.++.|++.+.. ..+.+.+.|...-.+..+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PLGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CCceEEEEEEEEECCeEEEEEE
Confidence 456778899999999999987654334567788887677 8999999999999543 2356789888876666788887
Q ss_pred EE
Q 041951 723 VV 724 (726)
Q Consensus 723 ~v 724 (726)
-+
T Consensus 98 ~a 99 (102)
T PF14874_consen 98 KA 99 (102)
T ss_pred EE
Confidence 54
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.15 Score=42.47 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=37.5
Q ss_pred eEEEEEEEEEEcCCCC-eeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 041951 642 FVVNFPRTVTNVGVAN-STYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~-~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 698 (726)
...+++.+|+|.|... ...++++..|.|-.+...|.++.--++|++++++++|+++.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 3678999999999765 45888889999999888888875338999999999999986
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.22 Score=46.37 Aligned_cols=65 Identities=28% Similarity=0.264 Sum_probs=50.0
Q ss_pred CCcccccEEEEeeccc------------------hHHHHhcCceEEEEeccCCC-------cc----ceeeecCEEEeeh
Q 041951 350 GSLVKGKIVICQSFKN------------------YPEVRKAGAAGTVLLNNEFD-------KV----SFVVSLPAVAVSQ 400 (726)
Q Consensus 350 ~~~~~gkiv~~~~~~~------------------~~~~~~~G~~g~i~~~~~~~-------~~----~~~~~~p~~~i~~ 400 (726)
..+++|||+++++... ...+.++||.++|+++.... +. .....+|.+.|+.
T Consensus 35 ~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ 114 (134)
T cd04815 35 AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISV 114 (134)
T ss_pred hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEech
Confidence 4579999999977322 57889999999999985421 11 1124599999999
Q ss_pred hhHHHHHHHHhcCc
Q 041951 401 DSLSSLISYKESTK 414 (726)
Q Consensus 401 ~~g~~l~~~~~~~~ 414 (726)
+++..|...++.+.
T Consensus 115 ed~~~L~r~l~~g~ 128 (134)
T cd04815 115 EDADMLERLAARGK 128 (134)
T ss_pred hcHHHHHHHHhCCC
Confidence 99999998888765
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.67 Score=41.98 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=40.4
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecC
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGV 699 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 699 (726)
.-.++.+++|.+..+.+|+++++.++|+.+......+++ ++|++..+.|.|.++..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 345788999999999999999999889999654488999 89999999999999874
|
|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.26 Score=46.73 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=45.2
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeec-----------------------cchHHHHhcCceEE
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSF-----------------------KNYPEVRKAGAAGT 377 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~-----------------------~~~~~~~~~G~~g~ 377 (726)
.+-++||.+... ....|....+...+++||||++.+. .|..++...|+.|+
T Consensus 20 vtg~lVfvGyGi------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 20 VTAPVVFAGYGI------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred ceEeEEEecCCc------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 345777776542 2345766666778899999999652 36788899999999
Q ss_pred EEeccCCCcc
Q 041951 378 VLLNNEFDKV 387 (726)
Q Consensus 378 i~~~~~~~~~ 387 (726)
|++++.....
T Consensus 94 Iv~~d~~~~~ 103 (151)
T cd04822 94 IVVNGPNSHS 103 (151)
T ss_pred EEEeCCcccC
Confidence 9999876543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.18 Score=49.32 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=49.9
Q ss_pred CCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCc-------------------c--------c---------
Q 041951 350 GSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDK-------------------V--------S--------- 388 (726)
Q Consensus 350 ~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~-------------------~--------~--------- 388 (726)
..+++|||+++++ .+|..+++++||.|+|||++.... . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4578999999987 678999999999999999884110 0 0
Q ss_pred -eeeecCEEEeehhhHHHHHHHHhcCc
Q 041951 389 -FVVSLPAVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 389 -~~~~~p~~~i~~~~g~~l~~~~~~~~ 414 (726)
..-.||++-|+..++..|++.+.-..
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~~ 157 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGPV 157 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCCC
Confidence 01248899999999999998875443
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.35 Score=45.04 Aligned_cols=58 Identities=31% Similarity=0.236 Sum_probs=44.6
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeec-----------------cchHHHHhcCceEEEEeccC
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSF-----------------KNYPEVRKAGAAGTVLLNNE 383 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~-----------------~~~~~~~~~G~~g~i~~~~~ 383 (726)
.+-++||.+... ....|....+...+++||||++.+. .|...+.++||.|+|++++.
T Consensus 22 v~gelVfvGyG~------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 22 VEAPLVFVGYGL------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTP 95 (137)
T ss_pred ceEeEEEecCCc------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 356777776542 2356777777778999999999862 37889999999999999875
Q ss_pred C
Q 041951 384 F 384 (726)
Q Consensus 384 ~ 384 (726)
.
T Consensus 96 ~ 96 (137)
T cd04820 96 R 96 (137)
T ss_pred c
Confidence 4
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=91.76 E-value=2.6 Score=38.45 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=52.1
Q ss_pred eEEEEEEEEEEcCCCCeeEEEEEec----CCce--------------------EEEEEcCEEEEeeCCcEEEEEEEEEee
Q 041951 642 FVVNFPRTVTNVGVANSTYRAKVLQ----NSKI--------------------SIKVVPDVLSFKSLNEKKSFSVTVTGK 697 (726)
Q Consensus 642 ~~~~~~rtv~n~g~~~~ty~~~~~~----~~g~--------------------~v~v~p~~l~~~~~g~~~~~~vt~~~~ 697 (726)
.+.+++.+|+|.++.+.+|.+.+.. ..|+ -+++ |..+++ +++++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 3778999999999999999987542 1221 1233 556888 899999999999998
Q ss_pred cCCCCCeEEEEEEEE
Q 041951 698 GVPQGAIVSASLVWS 712 (726)
Q Consensus 698 ~~~~~~~~~G~~~~~ 712 (726)
...-.+.+-|-|.+.
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 865667777777765
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.39 Score=45.00 Aligned_cols=59 Identities=27% Similarity=0.294 Sum_probs=45.3
Q ss_pred CceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEee-----------------------ccchHHHHhcCceE
Q 041951 320 GRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS-----------------------FKNYPEVRKAGAAG 376 (726)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----------------------~~~~~~~~~~G~~g 376 (726)
....|+|+.+... ....|....+...+++||||++.+ ..|...++++||.|
T Consensus 19 ~~~aelVfvGyGi------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 19 IKDAPLVFVGYGI------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred ccceeeEEecCCc------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 3457888876542 234677778888899999999854 13778899999999
Q ss_pred EEEeccCC
Q 041951 377 TVLLNNEF 384 (726)
Q Consensus 377 ~i~~~~~~ 384 (726)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.38 E-value=2.8 Score=46.23 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=57.0
Q ss_pred EEEEEEEEEEcCCCCee-EEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 041951 643 VVNFPRTVTNVGVANST-YRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWS 712 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~t-y~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 712 (726)
..++...+.|.|+.+.| -.+++..|.|-++.|+|.++---++|+++++.+|++++.....+-++=+|.-+
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 56778889999988766 78899999999999999987655999999999999998744445555556654
|
|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.52 E-value=2.8 Score=46.28 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=51.2
Q ss_pred CCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCcc---------ceeeecCEEEeehhhHHHHHHHHhcCc
Q 041951 350 GSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKV---------SFVVSLPAVAVSQDSLSSLISYKESTK 414 (726)
Q Consensus 350 ~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~---------~~~~~~p~~~i~~~~g~~l~~~~~~~~ 414 (726)
...++||++++.| .+|...++++||.++++.|+...-. .....||.++++.++++.+......+.
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 3458899999988 7899999999999999999943211 235679999999999999876544443
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=83.91 E-value=13 Score=33.74 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=46.0
Q ss_pred EEEEEEEEcCCCCeeEEEEEec---CCc----eEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 041951 645 NFPRTVTNVGVANSTYRAKVLQ---NSK----ISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWS 712 (726)
Q Consensus 645 ~~~rtv~n~g~~~~ty~~~~~~---~~g----~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 712 (726)
+.+.+|+|.|+.+..+.+.+.. ..+ -.+-++|..+.+ ++|+++++.| +.....+.+....=+|.+.
T Consensus 17 ~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 17 SASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp EEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred EEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 5578899999988888887764 111 156789999999 8999999999 7644333444444455554
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=82.00 E-value=1.7 Score=43.88 Aligned_cols=36 Identities=36% Similarity=0.463 Sum_probs=30.9
Q ss_pred CCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCC
Q 041951 350 GSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFD 385 (726)
Q Consensus 350 ~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~ 385 (726)
..+++||||++.+ .+|..+++.+||.|+|++++...
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4579999999976 46899999999999999998643
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.81 E-value=0.96 Score=53.43 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.8
Q ss_pred cCCCCCCcEEEEEeccCCCCCCCCC
Q 041951 97 KRSVESNLIVGVIDTGIWPESESFS 121 (726)
Q Consensus 97 ~~~~G~GVvVaVIDtGid~~Hp~f~ 121 (726)
..++|+||+|||+|||||+.-|-+.
T Consensus 76 PeYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 76 PEYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred cCCCCCceEEEEeecCCCCCCCCce
Confidence 3789999999999999999998886
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=81.27 E-value=1.5 Score=41.30 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=30.1
Q ss_pred CcccccEEEEee-----ccchHHHHhcCceEEEEeccCC
Q 041951 351 SLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEF 384 (726)
Q Consensus 351 ~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~ 384 (726)
-+++|||++++. ..|..+++..|+.|+|||.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 569999999985 7899999999999999998753
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 726 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-166 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 3e-98 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-13 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 2e-07 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 2e-07 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 5e-07 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 7e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-06 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 1e-06 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 2e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 2e-06 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 2e-06 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 2e-06 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 2e-06 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-06 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 2e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-06 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 3e-06 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 3e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-06 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 4e-06 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 6e-06 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 6e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 7e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 7e-06 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 8e-06 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 8e-06 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 8e-06 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 8e-06 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 8e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 9e-06 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 1e-05 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 2e-05 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 2e-05 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 2e-05 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 2e-05 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 2e-05 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 3e-05 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 3e-05 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 5e-05 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 5e-05 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 5e-05 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 5e-05 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 5e-05 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 5e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 6e-05 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 1e-04 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 4e-04 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 5e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 6e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 6e-04 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 6e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 668 bits (1724), Expect = 0.0
Identities = 318/654 (48%), Positives = 418/654 (63%), Gaps = 47/654 (7%)
Query: 81 TTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGK 140
TTRSWDF+G L++ R+ VESN++VGV+DTGIWPES SF DEGF P P KWKG C
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 141 NFTCNNKIIGARYY------TPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTA 194
NF CN KIIGAR Y +P + RD GHG+HTASTA+G V A+ YG+G GTA
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120
Query: 195 RGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIG 254
RGGVP RIAAYKVC+ GC +L A+DDAIADGVD+I++S+GG + + DAI+IG
Sbjct: 121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 180
Query: 255 AFHAMAKGVLTLNSAGNSGPGL--TASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYS 312
+FHA+ +G+LT NSAGN GP TAS++PWL+SVAAST DR FV +V +GNG++ G S
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240
Query: 313 INSFAMKGRRFPLVYGKEIS-ESCQELSSQECNPGCVNGSLVKGKIVICQ-SFKNYPEVR 370
IN+F + +PLV G++I + +S+ C VN +L+KGKIV+C+ SF + +
Sbjct: 241 INTFDNQY--YPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFK 298
Query: 371 KAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIF 430
A VL+ + + LP+ + + L + + Y S
Sbjct: 299 SLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSI----------------- 341
Query: 431 FQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDI 490
R+P A I K+ + + APVVV FSSRGPN +++KPDIS PGV+I
Sbjct: 342 ------------RSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEI 389
Query: 491 LAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMT 550
LAA+ +A +R +NIISGTSMSCPH G+A YVK+++P WSP+AIKSA+MT
Sbjct: 390 LAAWPSVAP---VGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMT 446
Query: 551 TAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCNIGYDESKVRIISG 610
TA MN+ N +AEFAYGSGHVNP+KA+ PGLVY+ + DY+K LC GY+ VR I+G
Sbjct: 447 TASPMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG 506
Query: 611 DGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVANSTYRAKVLQNSKI 670
D SAC G+ DLNYPS VS ++F F RT+T+V STYRA + +
Sbjct: 507 DYSACTSGN-TGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGL 565
Query: 671 SIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSDGNHWVRSPIVV 724
+I V P+VLSF L ++KSF++TV G +G +VSASLVWSDG H+VRSPI +
Sbjct: 566 TISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITI 617
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 616 bits (1590), Expect = 0.0
Identities = 248/682 (36%), Positives = 359/682 (52%), Gaps = 78/682 (11%)
Query: 81 TTRSWDFMGLNLS--ITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNG 138
TT + DF+ LN S + + ++IV V+D+GIWPES SF D+G PK+WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 139 GKNFT---CNNKIIGARYY----------TPAPYDTARDEEGHGSHTASTASGNEVKDAS 185
G F CN K+IGA Y+ ++ARD +GHG+H AS +GN K S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 186 FYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVD 245
+G GTARG P R+A YK F G ++ ++ A D A+ADGVD+I+IS G +
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRF-IP 179
Query: 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGL--TASVAPWLMSVAASTTDRLFVDKVALG 303
EDAISI +F AM KGVL SAGN GPG+ + +PW++ VA+ TDR F + LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 304 NGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSF 363
NG I G+S+ R P++Y K +S+ SS+E N + IVIC
Sbjct: 240 NGLKIRGWSLFPARAFVRDSPVIYNKTLSDC----SSEELLSQVEN---PENTIVICDDN 292
Query: 364 KNYPE----VRKAGAAGTVLLNNEFDKV-SFVVSLPAVAVSQDSLSSLISYKESTKYIFY 418
++ + + +A + ++ + S P V V++ +I+Y +++
Sbjct: 293 GDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVT--- 349
Query: 419 ILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTE-AVKDFDAPVVVGFSSRGPNAIVPE 477
P A I E + APVV S+RGP+
Sbjct: 350 --------------------------PTATITFQETYLDTKPAPVVAASSARGPSRSYLG 383
Query: 478 ILKPDISAPGVDILAAFSPLAQAS-IDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH 536
I KPDI APGV ILAA+ P A+ I + Y + SGTSM+ PHAAG+AA +K+ H
Sbjct: 384 ISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAH 443
Query: 537 PDWSPSAIKSAIMTTAWAMNSSKNTEAE---------FAYGSGHVNPVKAINPGLVYETF 587
P+WSPSAI+SA+MTTA +++++ + G+GHV+P +A++PGLVY+
Sbjct: 444 PEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDAT 503
Query: 588 KQDYIKMLCNIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVN-- 645
QDY+ +LC++ + E + + I+ ++ P DLNYPS A S +F +
Sbjct: 504 PQDYVNLLCSLNFTEEQFKTIARSSASHNC---SNPSADLNYPSFIALYSIEGNFTLLEQ 560
Query: 646 -FPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAI 704
F RTVTNVG +TY+AK+ +I V P +L FK+ NEK+S+++T+ G +
Sbjct: 561 KFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSR 620
Query: 705 VSASLVW--SDGNHWVRSPIVV 724
S+ W +GNH VRSPIV
Sbjct: 621 NVGSITWVEQNGNHSVRSPIVT 642
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 421 bits (1082), Expect = e-135
Identities = 112/627 (17%), Positives = 192/627 (30%), Gaps = 103/627 (16%)
Query: 105 IVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFT-------CNNKIIGARYYTPA 157
+V VID G E++ A + K K N+K+ Y +
Sbjct: 20 VVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDY--S 77
Query: 158 PYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCD-- 215
++ HG+H + SGN A G +P ++ +V G
Sbjct: 78 KDGKTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRVEIVNGLADY 133
Query: 216 SAGVLGAFDDAIADGVDVITISIGGDS-AVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP 274
+ A DAI G VI +S G + A D +A +KGV + SAGN
Sbjct: 134 ARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSS 193
Query: 275 -----GLTASVAPWLMSVAASTTDRLFVDKVALGNGKAISGY-SINSFAMKGRRFPLVYG 328
L + P V + + K ++ + + + + P++
Sbjct: 194 FGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLST 253
Query: 329 KEISES-CQELSSQECNPGCVNGSLVKGKIVICQSFKNYP-----EVRKAGAAGTVLLNN 382
+ + + + VKGKI + + + +KAGA G ++ +N
Sbjct: 254 NRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDN 313
Query: 383 EFDKVSFVVS----LPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSL 438
+ + +PA +S+ L + T
Sbjct: 314 QDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITF---------------------- 351
Query: 439 YLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLA 498
+ + + FSS G A +KPDI+APG DIL++ +
Sbjct: 352 ----------NATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-- 397
Query: 499 QASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSA--------IKSAIMT 550
KY +SGTSMS P AG+ ++ + P K +M+
Sbjct: 398 -----------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMS 446
Query: 551 TAWAMNSSKNTEAE--FAYGSGHVNPVKAINPGL-VYETFKQDYIKMLCNIGYDESKVRI 607
+A A+ G+G V+ KA + V + L N+
Sbjct: 447 SATALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVTDKDNTSSKVHLNNVSDKFEVTVN 506
Query: 608 ISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVANSTYRAKVLQN 667
+ P++L Y + V S + + N
Sbjct: 507 VHNKSDK---------PQELYYQATVQTDKVDGKHF----ALAPKVLYETSWQKITIPAN 553
Query: 668 SKISIKVVPDVLSFKSLNEKKSFSVTV 694
S + V D F + +
Sbjct: 554 SSKQVTVPIDASRFSKDLLAQMKNGYF 580
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSSRGP LKP++ APG I+AA + Y GT+M+ PH
Sbjct: 312 FSSRGPT--ADNRLKPEVVAPGNWIIAARAS----GTSMGQPINDYYTAAPGTAMATPHV 365
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYE 585
AG+AA + HP W+P +K+A++ TA + + + AYG+G VN KA +
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIA--DIAYGAGRVNAYKAAYYDNYAK 423
Query: 586 TFKQDY 591
Y
Sbjct: 424 LTFTGY 429
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 6e-14
Identities = 57/278 (20%), Positives = 100/278 (35%), Gaps = 67/278 (24%)
Query: 45 RSFNGFAAKLTVDERQKLASMEK-----------VVSVFPSRTLQLHTTRSWDFMGLNLS 93
A K+ V + +A + V + +++ GL+ S
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETE----GLDES 122
Query: 94 ITRKRSVE--------SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCN 145
+ + S + +G+IDTGI +G G +F
Sbjct: 123 AAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDL------------QGKVIGWVDFVNG 170
Query: 146 NKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAA 205
T D+ GHG+H AS A+G A+ G +G A P ++
Sbjct: 171 K-------------TTPYDDNGHGTHVASIAAGT---GAASNGKYKGMA----PGAKLVG 210
Query: 206 YKVCFP-GGCDSAGVLG----AFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMA 260
KV G + ++ A + G+ VI +S+G + D + D++S +A
Sbjct: 211 IKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGT-DSLSQAVNNAWD 269
Query: 261 KGVLTLNSAGNSGPGLTASV-----APWLMSVAASTTD 293
G++ + +AGNSGP +V A +++V A
Sbjct: 270 AGLVVVVAAGNSGPN-KYTVGSPAAASKVITVGAVDKY 306
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 7e-22
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 27/114 (23%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS GP + D+ APGV I + KY +GTSM+ PH
Sbjct: 189 FSSVGP--------ELDVMAPGVSIQSTL-------------PGNKYGAYNGTSMASPHV 227
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
AG AA + S HP+W+ + ++S++ T F YG G +N A
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTT------TKLGDSFYYGKGLINVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 7e-16
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 52/202 (25%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
SN+ V VID+GI GG + + +
Sbjct: 24 SNVKVAVIDSGIDSSHPDLKV--------------AGGASMVPSET------------NP 57
Query: 162 ARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGV-PSGRIAAYKVCFP-GGCDSA 217
+D HG+H A T A N G GV PS + A KV G +
Sbjct: 58 FQDNNSHGTHVAGTVAALNN----------SIGVL--GVAPSASLYAVKVLGADGSGQYS 105
Query: 218 GVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT 277
++ + AIA+ +DVI +S+GG S + A+ A+A GV+ + +AGN G +
Sbjct: 106 WIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASGVVVVAAAGNEGTSGS 161
Query: 278 ASV------APWLMSVAASTTD 293
+S P +++V A +
Sbjct: 162 SSTVGYPGKYPSVIAVGAVDSS 183
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 9e-22
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 27/113 (23%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FSS G + ++ APG + + + Y ++GTSM+ PH
Sbjct: 188 FSSVGA--------ELEVMAPGAGVYSTY-------------PTNTYATLNGTSMASPHV 226
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
AG AA + S HP+ S S +++ + +TA + F YG G +N A
Sbjct: 227 AGAAALILSKHPNLSASQVRNRLSSTA------TYLGSSFYYGKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 53/202 (26%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
+N+ V V+DTGI + G G +F
Sbjct: 24 ANVKVAVLDTGIQASHPDLNVVG--------------GASFVAGE-------------AY 56
Query: 162 ARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGV-PSGRIAAYKVCFPGGC-DSA 217
D GHG+H A T A N G GV PS + A KV G +
Sbjct: 57 NTDGNGHGTHVAGTVAALDN----------TTGVL--GVAPSVSLYAVKVLNSSGSGSYS 104
Query: 218 GVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP-GL 276
G++ + A +G+DVI +S+GG S + A+ +A A+GV+ + +AGNSG G
Sbjct: 105 GIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAGNSGNSGS 160
Query: 277 TASV-----APWLMSVAASTTD 293
T ++ +++V A ++
Sbjct: 161 TNTIGYPAKYDSVIAVGAVDSN 182
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 1e-21
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 27/113 (23%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FS G DI APGV++ + + Y ++GTSM+ PH
Sbjct: 183 FSQYGA--------GLDIVAPGVNVQSTY-------------PGSTYASLNGTSMATPHV 221
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
AG AA VK +P WS I++ + TA + + YGSG VN A
Sbjct: 222 AGAAALVKQKNPSWSNVQIRNHLKNTA------TSLGSTNLYGSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 6e-14
Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 50/198 (25%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
S + V V+DTGI + + GG +F +
Sbjct: 24 SGVKVAVLDTGISTHPD-LNI--------------RGGASFVPGE-------------PS 55
Query: 162 ARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGV-PSGRIAAYKVCFP-GGCDSA 217
+D GHG+H A T A N G GV PS + A KV G +
Sbjct: 56 TQDGNGHGTHVAGTIAALNN----------SIGVL--GVAPSAELYAVKVLGASGSGSVS 103
Query: 218 GVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT 277
+ + A +G+ V +S+G S E A++ A ++GVL + ++GNSG G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSI 159
Query: 278 AS--VAPWLMSVAASTTD 293
+ M+V A+ +
Sbjct: 160 SYPARYANAMAVGATDQN 177
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 99.1 bits (246), Expect = 2e-21
Identities = 48/222 (21%), Positives = 77/222 (34%), Gaps = 22/222 (9%)
Query: 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSC 522
V ++SR P + APG I + K +++GTSM+
Sbjct: 419 VYTWTSRDPCID--GGQGVTVCAPGGAIASVPQFT-----------MSKSQLMNGTSMAA 465
Query: 523 PHAAGVAA----YVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
PH AG A +K + ++SP +IK AI TA + FA G G +N KA
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDP----FAQGHGLLNVEKAF 521
Query: 579 NPGLVYETFKQDYIKMLCNIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSS 638
+ K + ++ +G + K I G + + Y A
Sbjct: 522 EHLTEHRQSKDNMLRFSVRVGNNADK-GIHLRQGVQRNSIDYNVYIEPIFYNDKEADPKD 580
Query: 639 GKSFVVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLS 680
+F V + V + I+++V P L
Sbjct: 581 KFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 5e-14
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 23/150 (15%)
Query: 158 PYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVC---FPGGC 214
+ HG+H +S ASGN + G P+ +I + +
Sbjct: 262 VLEVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSMTIGDGRLGSME 312
Query: 215 DSAGVLGAFDDAI-----ADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSA 269
++ A + +DVI +S G + S + GV+ + SA
Sbjct: 313 TGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASA 372
Query: 270 GNSGPGLT------ASVAPWLMSVAASTTD 293
GN GP L P L+ V A +
Sbjct: 373 GNHGPALCTVGTPPDISQPSLIGVGAYVSP 402
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 21/116 (18%)
Query: 466 FSSRGP----NAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMS 521
+SSRG V + +ISAPG + + + + YN ISGTSM+
Sbjct: 206 YSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------YNG------GYNTISGTSMA 252
Query: 522 CPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEA----EFAYGSGHVN 573
PH +G+AA + + +P S + ++S + A +++ A ++A G G
Sbjct: 253 TPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 8e-14
Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 47/213 (22%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
S + + V+DTG+ K+FT T ++
Sbjct: 26 SGINIAVLDTGVNTSHPDL------------VNNVEQCKDFTGA---------TTPINNS 64
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGV-PSGRIAAYKVCFP-GGCDSAGV 219
D GHG+H A TA + D G GV P + AYKV G S +
Sbjct: 65 CTDRNGHGTHVAGTALADGGSD------QAGIY--GVAPDADLWAYKVLLDSGSGYSDDI 116
Query: 220 LGAFDDAIADGV-----DVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP 274
A A +I++S+G + A++ +A +KGVL + +AGNSG
Sbjct: 117 AAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIVAAAGNSGY 172
Query: 275 GLTASV-----APWLMSVAAST-TDRLFVDKVA 301
++ P ++VAA + +VA
Sbjct: 173 S-QGTIGYPGALPNAIAVAALENVQQNGTYRVA 204
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 6e-20
Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 16/120 (13%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAF-----SPLAQASIDSEDKRKPKYNIISGTS 519
GFSSR + APGV IL+ + + Y+ GTS
Sbjct: 330 GFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTS 381
Query: 520 MSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
M+ PH GV A + P+ P I+ + TA+ N + G G V A+
Sbjct: 382 MAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDH---DTGYGLVKLDAALQ 438
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 76.7 bits (188), Expect = 1e-14
Identities = 43/223 (19%), Positives = 67/223 (30%), Gaps = 56/223 (25%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
+N+IV V+DTG+ +G G +
Sbjct: 154 TNIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAFDE--------ELPAGTD 193
Query: 162 ARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP-------G 212
+ G+H A T A + G+G G P +I + G
Sbjct: 194 SSYGGSAGTHVAGTIAAKKD----------GKGIV-GVAPGAKIMPIVIFDDPALVGGNG 242
Query: 213 GCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNS 272
V A G V+ S GG ++A +AM GV+ + SAGN+
Sbjct: 243 YVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMVVSAGNN 298
Query: 273 GPGLTASV---APWLMSVAASTTDRLFVDKVALGNGKAISGYS 312
P ++ VAA G ++G+S
Sbjct: 299 TSDSHHQYPAGYPGVIQVAALDYY---------GGTFRVAGFS 332
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 4e-19
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSC 522
V FSSRGP +KPD+ APG IL+A S LA S KY + GTSM+
Sbjct: 202 VAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYMGGTSMAT 258
Query: 523 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAE---FAYGSGHVNPVKAIN 579
P AG A ++ K +++ A + + + G G V K++N
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAA-LIAGAADIGLGYPNGNQGWGRVTLDKSLN 317
Query: 580 PGLVYET 586
V E+
Sbjct: 318 VAYVNES 324
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 2e-15
Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 42/219 (19%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
IV V DTG+ +D A + KI Y +
Sbjct: 22 QGQIVAVADTGLDTGR---NDSSMHEAFR---------------GKITA--LYALGRTNN 61
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGV-PSGRIAAYKVCFPGGCDS---A 217
A D GHG+H A + GN G+ G+ P + + GG +
Sbjct: 62 ANDTNGHGTHVAGSVLGN------------GSTNKGMAPQANLVFQSIMDSGGGLGGLPS 109
Query: 218 GVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL- 276
+ F A + G + T S G ++ D+ ++ + + L +AGN GP
Sbjct: 110 NLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGG 168
Query: 277 ---TASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYS 312
A ++V A+ R A ++ +S
Sbjct: 169 TISAPGTAKNAITVGATENLRPSFGSYADNIN-HVAQFS 206
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 5e-19
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 21/125 (16%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKP---------KYNII 515
FS+ G N DI+APG ++ K +Y
Sbjct: 351 EFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQ 403
Query: 516 SGTSMSCPHAAGVAAYVKS-FHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNP 574
+GT+++ P +G A + +H + P + + N+ + YG G ++
Sbjct: 404 AGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR----YGHGELDV 459
Query: 575 VKAIN 579
KA+N
Sbjct: 460 YKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 5e-13
Identities = 44/235 (18%), Positives = 71/235 (30%), Gaps = 51/235 (21%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
+N + +IDTG+ + KN N G
Sbjct: 146 ANTKIAIIDTGVMKNHDDL-------KNNFST----DSKNLVPLNGFRGTEPEETGDVHD 194
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLG 221
D +GHG+ + S N + G P+ + Y+V + V
Sbjct: 195 VNDRKGHGTMVSGQTSANG-------KLI-----GVAPNNKFTMYRVFGSKKTELLWVSK 242
Query: 222 AFDDAIADGVDVITISIGGDSAVDFS----------------EDAISIGAFHAMAKGVLT 265
A A DG VI IS+G +D + + AI+ +A K +
Sbjct: 243 AIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAIN----YAKKKKSIV 298
Query: 266 LNSAGNSGPGLTASVAPWLMSVAASTTDRLFV----DKV----ALGNGKAISGYS 312
+ +AGN G + L + V D V + +S +S
Sbjct: 299 VAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQKSNLSEFS 353
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 3e-18
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 22/119 (18%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPH 524
FS+ G N K I APG +IL A +E + ++GTSM+ P
Sbjct: 255 HFSNWGGNNT-----KEGILAPGEEILGAQ-------PCTE-----EPVRLTGTSMAAPV 297
Query: 525 AAGVAAYVKSFH----PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
G++A + S A+++A++ TA + E E G VN A+
Sbjct: 298 MTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPER-CLRGFVNIPGAMK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 31/213 (14%), Positives = 58/213 (27%), Gaps = 30/213 (14%)
Query: 101 ESNLIVGVIDTGIWPESESFSDEGFGPAPKKWK--GACNGGKNFTCNNKIIG-------- 150
+ + + +ID F W +++ I
Sbjct: 48 DPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEK 107
Query: 151 --ARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKV 208
A H H ST G E + +G+ P+ R+
Sbjct: 108 EEALEAVIPDTKDRIVLNDHACHVTSTIVGQE--HSPVFGIA--------PNCRVINMPQ 157
Query: 209 CFPGGCDSAGVLG------AFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKG 262
+ V+ A D A+ G ++I + + E+ +
Sbjct: 158 DAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNN 217
Query: 263 VLTLNSAGNSGPGLTAS--VAPWLMSVAASTTD 293
VL ++ GN+ V P ++V A+ D
Sbjct: 218 VLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD 250
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 5e-18
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 24/115 (20%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPH 524
S G N + DI+APG +I K SGTS +
Sbjct: 238 TGSRFGNNWV-------DIAAPGQNITFLR-------------PDAKTGTGSGTSEATAI 277
Query: 525 AAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
+GV A + S +P + + +K ++ +A S + +N KAI+
Sbjct: 278 VSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKV----TEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 63/240 (26%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
+ ++V V+D+G+ + +FT + +P P
Sbjct: 44 TPVVVSVVDSGV----AFIGG---------LSDSEFAKFSFTQDG--------SPFPVKK 82
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDS----A 217
+ HG+ AS + YG+ G P I++ +V G DS
Sbjct: 83 SEALYIHGTAMASLIASR-------YGIY-----GVYPHALISSRRVIPDGVQDSWIRAI 130
Query: 218 GVLGAFDDAIADGVDVITISIGGDSAVDFS---EDAISIGAFHAMAKGVLTLNSAGNSGP 274
+ + +I IS G S E L + + GN G
Sbjct: 131 ESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRLIVAAVGNDGA 186
Query: 275 GL-------------------TASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINS 315
+ ++ VAA R V G G S + N
Sbjct: 187 DIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITGSRFGNNW 246
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 9e-18
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 29/119 (24%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPH 524
F++ + DI APGV I + + +DS Y +SGT+M+ PH
Sbjct: 217 DFTNTNE--------EIDIVAPGVGIKSTY-------LDS------GYAELSGTAMAAPH 255
Query: 525 AAGVAAYVKSFHPD-----WSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
AG A + + D S + I + ++ A T G ++ V+ I
Sbjct: 256 VAGALALIINLAEDAFKRSLSETEIYAQLVRRA---TPIGFTAQAEGNGFLTLDLVERI 311
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 48/206 (23%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
+ I+GVIDTG + GG N T +
Sbjct: 41 AGQIIGVIDTGCQVDHPDL------------AERIIGGVNLTTDYG---------GDETN 79
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP-GGCDSAGVL 220
D GHG+H A T + G G G P + K G + +
Sbjct: 80 FSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKALSGDGSGEMGWIA 130
Query: 221 GAFDDAI------ADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP 274
A A+ + + +IT+S+GG + + DA+ +A++ V + +AGN G
Sbjct: 131 KAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVCAAGNEGD 186
Query: 275 GLTASV-------APWLMSVAASTTD 293
G + +++V A D
Sbjct: 187 GREDTNEFAYPAAYNEVIAVGAVDFD 212
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 28/115 (24%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPH 524
FS+ G D++APG I + + S Y +SGTSM+ PH
Sbjct: 192 SFSTYGSWV--------DVAAPGSSIYSTY-------PTS------TYASLSGTSMATPH 230
Query: 525 AAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
AGVA + S S S I++AI TA ++ + + G VN KA+
Sbjct: 231 VAGVAGLLAS--QGRSASNIRAAIENTADKISGTGTY-----WAKGRVNAYKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 40/195 (20%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
S + ++DTG+ G GG +F N+ T
Sbjct: 30 SGAKIAIVDTGVQSNHPDL------------AGKVVGGWDFVDND-------------ST 64
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP-GGCDSAGVL 220
++ GHG+H A A+ G P I A +V G V
Sbjct: 65 PQNGNGHGTHCAGIAAAVTNNSTGIAGTA--------PKASILAVRVLDNSGSGTWTAVA 116
Query: 221 GAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTASV 280
A G VI++S+GG + A++ +A KG + + +AGN+G
Sbjct: 117 NGITYAADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNAGNTAPNYP 172
Query: 281 A--PWLMSVAASTTD 293
A ++VA++ +
Sbjct: 173 AYYSNAIAVASTDQN 187
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 22/119 (18%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPH 524
FS+ G + D++APG DIL+ + + Y+ ++GTSM+ PH
Sbjct: 236 SFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSD------AYSFMAGTSMATPH 281
Query: 525 AAGVAAYVKS----FHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
+GVAA V S + + +P+ +K +++T N + GSG V+ A+N
Sbjct: 282 VSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRA----LGSGIVDAEAAVN 336
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 46/219 (21%)
Query: 102 SNLIVGVIDTGI----------WPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGA 151
N++V V+DTGI P + S+ ++ N A
Sbjct: 32 QNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDN----WA 87
Query: 152 RYYTPAPYDTARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGV-PSGRIAAYKV 208
P P D HGSH A T A N G A GV ++ +
Sbjct: 88 CGGRPDPRKERSDSSWHGSHVAGTIAAVTNN---------RIGVA--GVAYGAKVVPVRA 136
Query: 209 CFPGGCDSAGVLGAFDDAI----------ADGVDVITISIGGDSAVDFS-EDAISIGAFH 257
G + + A + VI +S+G D ++ + I
Sbjct: 137 LGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMID----R 192
Query: 258 AMAKGVLTLNSAGNSGPGLTASV---APWLMSVAASTTD 293
A G L + +AGN + + ++SV A+T+
Sbjct: 193 ATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR 231
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 39/128 (30%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPH 524
FS+R P ++SAPGVDIL+ + Y + GT+M+ PH
Sbjct: 215 SFSNRQP----------EVSAPGVDILSTY-------------PDDSYETLMGTAMATPH 251
Query: 525 AAGVAAYVKSFH-------------PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
+GV A +++ + D S + ++ + TA + + YG G
Sbjct: 252 VSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---DYGYGV 308
Query: 572 VNPVKAIN 579
V A+
Sbjct: 309 VRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 60/213 (28%)
Query: 106 VGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165
V V+DTG+ + + D+
Sbjct: 33 VAVLDTGVDYDHPDL------------AANIAWCVSTLRGK--------VSTKLRDCADQ 72
Query: 166 EGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP-GGCDSAGVLGA 222
GHG+H T A N G G P +I + +V G + +
Sbjct: 73 NGHGTHVIGTIAALNN----------DIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIG 121
Query: 223 FDDAIAD--------------------GVDVITISIGGDSAVDFSEDAISIGAFHAMAKG 262
+ AI +VI++S+GG + + D I A G
Sbjct: 122 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII----QAYNAG 177
Query: 263 VLTLNSAGNSGPGLTASVA--PWLMSVAASTTD 293
++ + ++GN G + A P +++V A ++
Sbjct: 178 IVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN 210
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 28/115 (24%)
Query: 465 GFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPH 524
FS+ G D+ APGVDI++ + +Y +SGTSM+ PH
Sbjct: 193 SFSNYGT--------WVDVVAPGVDIVSTIT-------------GNRYAYMSGTSMASPH 231
Query: 525 AAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
AG+AA + S + I+ AI TA ++ + + G +N A+
Sbjct: 232 VAGLAALLAS--QGRNNIEIRQAIEQTADKISGTGTY-----FKYGRINSYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 6e-16
Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 46/198 (23%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
S + VIDTG+ G G +F N+
Sbjct: 31 SGQEIAVIDTGVDYTHPDL------------DGKVIKGYDFVDND-------------YD 65
Query: 162 ARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGV-PSGRIAAYKVCFP-GGCDSA 217
D HG+H A A N G A G+ P+ RI A + G +
Sbjct: 66 PMDLNNHGTHVAGIAAAETNN---------ATGIA--GMAPNTRILAVRALDRNGSGTLS 114
Query: 218 GVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT 277
+ A A G +VI +S+G D E+A++ +A KG + + +AGN+G T
Sbjct: 115 DIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSSTT 170
Query: 278 ASVA--PWLMSVAASTTD 293
A +++V A
Sbjct: 171 FEPASYENVIAVGAVDQY 188
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 39/127 (30%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FS+R P ++SAPGVDIL+ + D Y + GT+M+ PH
Sbjct: 291 FSNRQP----------EVSAPGVDILSTY-------PDD------SYETLMGTAMATPHV 327
Query: 526 AGVAAYVKSFH-------------PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHV 572
+GV A +++ + D S + ++ + TA + + YG G V
Sbjct: 328 SGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---DYGYGVV 384
Query: 573 NPVKAIN 579
A+
Sbjct: 385 RAALAVQ 391
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 52/289 (17%), Positives = 86/289 (29%), Gaps = 63/289 (21%)
Query: 39 LVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTLQLHTTRSWDFMGLN------- 91
+V ++ + + KL M V V L SW G
Sbjct: 26 IVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIP 84
Query: 92 -----------LSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGK 140
SIT S + V V+DTG+ +
Sbjct: 85 WGIERVKAPSVWSITDGSV--SVIQVAVLDTGVDYDHPDL------------AANIAWCV 130
Query: 141 NFTCNNKIIGARYYTPAPYDTARDEEGHGSHTAST--ASGNEV------KDASFYGV--- 189
+ D+ GHG+H T A N++ Y V
Sbjct: 131 STLRGK--------VSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVL 182
Query: 190 ---GQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDF 246
G G+ A D G++ D D +VI++S+GG + +
Sbjct: 183 DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD--DDAAEVISMSLGGPADDSY 240
Query: 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLTASVA--PWLMSVAASTTD 293
D I A G++ + ++GN G + A P +++V A ++
Sbjct: 241 LYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN 285
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FS+ G V D+ APG I +A D Y ISGTSM+ PH
Sbjct: 188 FSNWGS--CV------DLFAPGSQIKSA-------WYDG------GYKTISGTSMATPHV 226
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTA 552
AGVAA + +P + + + A
Sbjct: 227 AGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 49/201 (24%), Positives = 73/201 (36%), Gaps = 64/201 (31%)
Query: 106 VGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165
VIDTG+ E F G G +F N+ + D
Sbjct: 33 AYVIDTGVNNNHEEFG------------GRSVSGYDFVDNDA-------------DSSDC 67
Query: 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKV--CFPGGCDSAGVLGAF 223
GHG+H A T G++ YGV + I +V C G S GV+
Sbjct: 68 NGHGTHVAGTIGGSQ------YGVAKNV--------NIVGVRVLSCSGSGTTS-GVISGV 112
Query: 224 DDAIADGV--DVITISIGGD--SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG------ 273
D + V +S+GG +A+D A+ A+ GV + +AGNS
Sbjct: 113 DWVAQNASGPSVANMSLGGGQSTALD---SAVQ----GAIQSGVSFMLAAGNSNADACNT 165
Query: 274 -PGLTASVAPWLMSVAASTTD 293
P A P ++V ++T+
Sbjct: 166 SP---AR-VPSGVTVGSTTSS 182
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 19/87 (21%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FS+ G + DI APG I ++ S N ISGTSM+ PH
Sbjct: 190 FSNYGT--CL------DIYAPGSSITSS-------WYTSNSA----TNTISGTSMASPHV 230
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTA 552
AGVAA +P+ SP+ + + + T A
Sbjct: 231 AGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 47/199 (23%), Positives = 74/199 (37%), Gaps = 64/199 (32%)
Query: 108 VIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167
VIDTG+ F G + G +F N+ A D G
Sbjct: 37 VIDTGVLNTHNEFG------------GRASSGYDFIDND-------------YDATDCNG 71
Query: 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKV--CFPGGCDSAGVLGAFDD 225
HG+H A T G+ YGV + + +V C G +S GV+ +
Sbjct: 72 HGTHVAGTIGGST------YGVAKNV--------NVVGVRVLNCSGSGSNS-GVIAGINW 116
Query: 226 AIADGV--DVITISIGGD--SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG-------P 274
+ V +S+GG A D DA++ A+A G+ + +AGN P
Sbjct: 117 VKNNASGPAVANMSLGGGASQATD---DAVN----AAVAAGITFVVAAGNDNSNACNYSP 169
Query: 275 GLTASVAPWLMSVAASTTD 293
A A ++V ++T++
Sbjct: 170 ---AR-AADAITVGSTTSN 184
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 4e-15
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D+ APG DI+ A S D + SGTS + H AG+AA + S P+ +
Sbjct: 208 DLFAPGEDIIGA-------SSDCSTC----FVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 542 SAIKSAIMTTA 552
+ ++ ++ +
Sbjct: 257 AELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 34/200 (17%), Positives = 59/200 (29%), Gaps = 55/200 (27%)
Query: 108 VIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167
++DT I + G + A +
Sbjct: 32 LLDTSIQSDHREIE----GRVMVTDFENVPEEDGTR--------------FHRQASKCDS 73
Query: 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKV--CFPGGCDSAGVLGAFDD 225
HG+H A SG + GV +G + + +V C G +G L +
Sbjct: 74 HGTHLAGVVSGRD------AGVAKGA--------SMRSLRVLNCQ-GKGTVSGTLIGLEF 118
Query: 226 AIAD------GVDVITISIGGD--SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT 277
G V+ + + G ++ A GV+ + +AGN
Sbjct: 119 IRKSQLVQPVGPLVVLLPLAGGYSRVLN---AACQ----RLARAGVVLVTAAGNFRDDAC 171
Query: 278 ----ASVAPWLMSVAASTTD 293
AS AP +++V A+
Sbjct: 172 LYSPAS-APEVITVGATNAQ 190
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D+ APG I +A S+ ++GTSM+ PH AGVAA +P +P
Sbjct: 196 DLFAPGASIPSA-------WYTSDTA----TQTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 542 SAIKSAIMTTA 552
+++ SAI+ A
Sbjct: 245 ASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 46/199 (23%), Positives = 71/199 (35%), Gaps = 66/199 (33%)
Query: 108 VIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167
VIDTGI F G G + N +D G
Sbjct: 37 VIDTGIRTTHREFG------------GRARVGYDALGGN---------------GQDCNG 69
Query: 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKV--CFPGGCDSAGVLGAFDD 225
HG+H A T G YGV + + A +V C G ++GV+ D
Sbjct: 70 HGTHVAGTIGGVT------YGVAKAV--------NLYAVRVLDCN-GSGSTSGVIAGVDW 114
Query: 226 AIADGVD--VITISIGGD--SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG-------P 274
+ V +S+GG +A+D +A+ +++A GV+ +AGN P
Sbjct: 115 VTRNHRRPAVANMSLGGGVSTALD---NAVK----NSIAAGVVYAVAAGNDNANACNYSP 167
Query: 275 GLTASVAPWLMSVAASTTD 293
A ++V A+T+
Sbjct: 168 ---AR-VAEALTVGATTSS 182
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 1e-14
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
D+ APG DI+ A S D + SGTS + H AG+AA + S P+ +
Sbjct: 360 DLFAPGEDIIGA-------SSDCSTC----FVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 542 SAIKSAIMTTA 552
+ ++ ++ +
Sbjct: 409 AELRQRLIHFS 419
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 5e-11
Identities = 49/312 (15%), Positives = 91/312 (29%), Gaps = 69/312 (22%)
Query: 4 YIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLA 63
Y+V + E S + LQ R ++ + GF K++ D +
Sbjct: 78 YVVVLK--EETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELAL 135
Query: 64 SMEKVVSVFPSRTLQLHTTRSW-----DFMGLNLSITRKRSVESNLIVGVIDTGIWPESE 118
+ V + ++ + W + S + V ++DT I +
Sbjct: 136 KLPHVDYIEEDSSVFAQSI-PWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHR 194
Query: 119 SFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASG 178
G + A + HG+H A SG
Sbjct: 195 EIE----GRVMVTDFENVPEEDGTRFHR--------------QASKCDSHGTHLAGVVSG 236
Query: 179 NEVKDASFYGVGQGTARGGVPSGRIAAYKV--CFPGGCDSAGVLGAFDDAIADGVD---- 232
+ GV +G + + +V C G +G L + +
Sbjct: 237 RD------AGVAKGA--------SMRSLRVLNCQ-GKGTVSGTLIGLEFIRKSQLVQPVG 281
Query: 233 --VITISIGGD--SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG-------PGLTASVA 281
V+ + + G ++ A GV+ + +AGN P AS A
Sbjct: 282 PLVVLLPLAGGYSRVLN---AACQ----RLARAGVVLVTAAGNFRDDACLYSP---AS-A 330
Query: 282 PWLMSVAASTTD 293
P +++V A+
Sbjct: 331 PEVITVGATNAQ 342
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 511 KYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSG 570
Y +GTSM+ PH +GVA V S+HP+ S S +++A+ TA ++ + G G
Sbjct: 361 DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDN---QTGYG 417
Query: 571 HVNPVKAIN 579
+N V A
Sbjct: 418 MINAVAAKA 426
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 42/199 (21%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
N + +ID+G G N + +
Sbjct: 22 GNRTICIIDSGYDRSHNDL------------NANNVTGTNNSGTGN-----------WYQ 58
Query: 162 ARDEEGHGSHTAST--ASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGC-DSAG 218
+ HG+H A T A N + GV + I KV G S+
Sbjct: 59 PGNNNAHGTHVAGTIAAIAN---NEGVVGVMPN------QNANIHIVKVFNEAGWGYSSS 109
Query: 219 VLGAFDDAI-ADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT 277
++ A D + + G +V+T+S+GG + +A++ GVL + +AGN+G
Sbjct: 110 LVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLIAAAGNAGDSSY 165
Query: 278 ASVA--PWLMSVAASTTDR 294
+ A +MSVAA ++
Sbjct: 166 SYPASYDSVMSVAAVDSNL 184
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 25/199 (12%), Positives = 50/199 (25%), Gaps = 25/199 (12%)
Query: 466 FSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525
FS +IS PG IL S + + + I G S
Sbjct: 189 FSQYTDQV--------EISGPGEAIL---------STVTVGEGRLADITIGGQSYFSNGV 231
Query: 526 AGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYE 585
S + + ++ T ++ G++ + + +
Sbjct: 232 VPHNRLTPSGTSYAPAP------INASATGALAECTVNGTSFSCGNMANKICLVERVGNQ 285
Query: 586 TFKQDYIKMLCNIGYDESKVRIISG--DGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFV 643
I +K I+ D+ PS++ ++G +
Sbjct: 286 GSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALK 345
Query: 644 VNFPRTVTNVGVANSTYRA 662
++ T N Y
Sbjct: 346 AKLGQSTTVSNQGNQDYEY 364
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI APG I + I + N ISGTSM+ PH AG+AAY+ S
Sbjct: 201 DIFAPGTSITST-------WIGG------RTNTISGTSMATPHIAGLAAYLFGLEGG-SA 246
Query: 542 SAIKSAIMTTA 552
A+ I T +
Sbjct: 247 GAMCGRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 43/204 (21%), Positives = 67/204 (32%), Gaps = 72/204 (35%)
Query: 108 VIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167
VIDTG+ F G K++ TARD G
Sbjct: 38 VIDTGVEDTHPDFE------------GRAKQIKSYA----------------STARDGHG 69
Query: 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKV--CFPGGCDSAGVLGAFDD 225
HG+H A T +GV + I KV G + ++ D
Sbjct: 70 HGTHCAGTIGSKT------WGVAKKV--------SIFGVKVLDDS-GSGSLSNIIAGMDF 114
Query: 226 AIADGVD-------VITISIGGD--SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG--- 273
+D V ++S+GG +A++ A + + GV +AGN
Sbjct: 115 VASDRQSRNCPRRTVASMSLGGGYSAALN---QAAA----RLQSSGVFVAVAAGNDNRDA 167
Query: 274 ----PGLTASVAPWLMSVAASTTD 293
P AS P + +V A+ ++
Sbjct: 168 ANTSP---AS-EPTVCTVGATDSN 187
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
DI PG DIL+ I ISGTSM+ PH AG+AAY+ + +
Sbjct: 200 DIFGPGTDILST-------WIGG------STRSISGTSMATPHVAGLAAYLMTLGKT-TA 245
Query: 542 SAIKSAIMTTA 552
++ I TA
Sbjct: 246 ASACRYIADTA 256
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 47/204 (23%), Positives = 72/204 (35%), Gaps = 72/204 (35%)
Query: 108 VIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167
VIDTGI F G A + K + Y ++RD G
Sbjct: 37 VIDTGIEASHPEFE----GRA--QM------VKTY----------------YYSSRDGNG 68
Query: 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKV--CFPGGCDSAGVLGAFDD 225
HG+H A T YGV + T ++ KV G + ++ D
Sbjct: 69 HGTHCAGTVGSRT------YGVAKKT--------QLFGVKVLDDN-GSGQYSTIIAGMDF 113
Query: 226 AIADGVD-------VITISIGGD--SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSG--- 273
+D + V ++S+GG S+V+ A + + GV+ +AGN+
Sbjct: 114 VASDKNNRNCPKGVVASLSLGGGYSSSVN---SAAA----RLQSSGVMVAVAAGNNNADA 166
Query: 274 ----PGLTASVAPWLMSVAASTTD 293
P AS P + +V AS
Sbjct: 167 RNYSP---AS-EPSVCTVGASDRY 186
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 4e-08
Identities = 83/552 (15%), Positives = 155/552 (28%), Gaps = 195/552 (35%)
Query: 27 QEVVVGRSVEDILVRSYRRSFNGF-AAKLTVDERQKLASMEKVVS----------VFPSR 75
QE +V + VE++L +Y F + + ++RQ + VF
Sbjct: 75 QEEMVQKFVEEVLRINY-----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-- 127
Query: 76 TLQLHTTRSWDFMGLNLSITRKRSVESNLIV-GVIDTG-IWPESESFSDEGFGPA-PKK- 131
+ + +R ++ L ++ R N+++ GV+ +G W + K
Sbjct: 128 --KYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 132 -W--KGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYG 188
W CN + +++ Y P T+R + H S+ + ++
Sbjct: 185 FWLNLKNCNSPETVL---EMLQKLLYQIDPNWTSRSD--HSSNIKLRI--HSIQAEL--- 234
Query: 189 VGQGTARGGVPSGRIAAYK-----------VCFPGGCDSAGVLGAFD----------DA- 226
R R+ K V +A AF+
Sbjct: 235 ------R------RLLKSKPYENCLLVLLNVQ------NAKAWNAFNLSCKILLTTRFKQ 276
Query: 227 IADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLT--LNSAGNSGPGLTASVAPWL 284
+ D + + S D S+ K +L L+ P + P
Sbjct: 277 VTD-------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 285 MS-VAASTTD---------RLFVDKVALGNGKAISGYSIN------------SFAMKGRR 322
+S +A S D + DK+ I S+N ++
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLT----TIIES-SLNVLEPAEYRKMFDRLSV---- 380
Query: 323 FP-----------LVYGKEISESCQELSSQECNPGCVNGSLVKGKIVI-------CQSFK 364
FP L++ I + ++ V + I I +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 365 NYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIF-YI---- 419
N + ++ ++ D + + + + L +Y + +I
Sbjct: 441 NEYALHRS------IV----DHYNIPKTFDSDDLIPPYLD---------QYFYSHIGHHL 481
Query: 420 -----------LRKMLL-FHFIFFQKIIHS------------------LYLDYRT---PV 446
R + L F F+ QKI H Y Y P
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFL-EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 447 AEILKTEAVKDF 458
E L A+ DF
Sbjct: 541 YERL-VNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 45/321 (14%), Positives = 96/321 (29%), Gaps = 85/321 (26%)
Query: 436 HSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVD-ILAAF 494
H ++D+ T + + + F+ V F + V ++ K +S +D I+ +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD----VQDMPKSILSKEEIDHIIMSK 58
Query: 495 SPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH-PD--WSPSAIKS----- 546
++ + ++ V +V+ + + S IK+
Sbjct: 59 DAVSGT-----------LRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 547 AIMTTAW--AMNSSKNTEAEFAYGSGHVN---PVKAINPGLVYETFKQDYIKMLCNIGYD 601
++MT + + N FA +V+ P + L E +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQAL-LELRPAKNV--------- 153
Query: 602 ESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTV--TNVGVANST 659
+I G GS K +A V + N+ NS
Sbjct: 154 -----LIDGVL-----GSGKT--------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 660 -YRAKVLQNSKISIKVVPDVLSFKS--------LNE-KKSFSVTVTGKGVPQGAIVSASL 709
++LQ + ++ P+ S ++ + + K +V L
Sbjct: 196 ETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---L 250
Query: 710 --VWSDGNHW----VRSPIVV 724
V + W + I++
Sbjct: 251 LNVQ-NAKAWNAFNLSCKILL 270
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-07
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 12/118 (10%)
Query: 480 KPDISAPGVDILAAFSPLAQAS-IDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD 538
P S ++A I S D N GTS + P AAGV + +P+
Sbjct: 232 HPPYSEGCSAVMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPN 291
Query: 539 WSPSAIKSAIMTTA----------WAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYET 586
+ ++ + +A W ++ YG G ++ K I +E
Sbjct: 292 LTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK-YSHRYGFGKIDAHKLIEMSKTWEN 348
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 48/209 (22%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
+ ++ ++D G+ E+E G +F N P P
Sbjct: 54 AGVVAAIVDDGLDYENEDL-------KDNFCA---EGSWDFNDNTN-------LPKPRL- 95
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLG 221
++ HG+ A + K +F GVG G + +I+ ++ G +
Sbjct: 96 --SDDYHGTRCAGEIAA--KKGNNFCGVGVG------YNAKISGIRI-LSGDITTEDEAA 144
Query: 222 AFDDAIADGVDVITISIGG-------DSAVDFSEDAISIGAFHAM-AKGVLTLNSAGNSG 273
+ D D+ + S G D + A+ G +KG + + ++GN G
Sbjct: 145 SLIYG-LDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGG 203
Query: 274 --------PGLTASVAPWLMSVAASTTDR 294
G T S + +++ A
Sbjct: 204 TRGDNCNYDGYTNS--IYSITIGAIDHKD 230
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 13/141 (9%)
Query: 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSP 541
+ + + + + I + D R+ +GTS S P AAG+ A + + +
Sbjct: 224 EACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTW 283
Query: 542 SAIKSAIMTTA---------WAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYI 592
++ ++ T+ WA N + +YG G ++ + + T
Sbjct: 284 RDMQHLVVQTSKPAHLNADDWATNGVGRKVSH-SYGYGLLDAGAMVALAQNWTTVAPQRK 342
Query: 593 KMLCNIGYDESKVRIISGDGS 613
C + I
Sbjct: 343 ---CIVEILVEPKDIGKRLEV 360
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 726 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.89 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.83 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 99.07 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.9 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.84 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.72 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.6 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.4 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.14 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.23 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 90.54 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 90.11 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 89.41 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 89.1 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 88.27 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 85.78 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-119 Score=1039.81 Aligned_cols=602 Identities=40% Similarity=0.674 Sum_probs=540.3
Q ss_pred ccCCccccCCCc--cccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCccc---CCceeEeeeecC
Q 041951 81 TTRSWDFMGLNL--SITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFT---CNNKIIGARYYT 155 (726)
Q Consensus 81 ~~~s~~~~g~~~--~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~---~n~k~ig~~~~~ 155 (726)
|+++|+|+|++. .+|..+.+|+||+|||||||||++||+|.+.+++|+|.+|+|.|+.|.+|. ||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 578999999984 699999999999999999999999999999999999999999999999885 999999999994
Q ss_pred C----------CCCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHH
Q 041951 156 P----------APYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDD 225 (726)
Q Consensus 156 ~----------~~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ 225 (726)
. .+..+++|..||||||||||||+.+.+.+.+|++.|.+.||||+|+|++||+|+..|+..+++++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~ 160 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQ 160 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHHHH
Confidence 1 134678899999999999999999888888999999999999999999999999888999999999999
Q ss_pred HhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeC
Q 041951 226 AIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALG 303 (726)
Q Consensus 226 A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~ 303 (726)
|+++|+||||||||+. ...+..+++.+++++|.++|++||+||||+|+... ++.+||+|+|||++.+|.|+..+.++
T Consensus 161 A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lg 239 (649)
T 3i6s_A 161 AVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239 (649)
T ss_dssp HHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEET
T ss_pred HHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeC
Confidence 9999999999999987 46778899999999999999999999999998866 88999999999999999999999999
Q ss_pred CCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcc--cccEEEEee-----ccchHHHHhcCceE
Q 041951 304 NGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLV--KGKIVICQS-----FKNYPEVRKAGAAG 376 (726)
Q Consensus 304 ~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkiv~~~~-----~~~~~~~~~~G~~g 376 (726)
+++.+.|.+++........+|++|.. ....|.+..++..++ +||||+|+| .+|..+++++|+.|
T Consensus 240 ng~~~~g~sl~~~~~~~~~~plv~~~---------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g 310 (649)
T 3i6s_A 240 NGLKIRGWSLFPARAFVRDSPVIYNK---------TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAA 310 (649)
T ss_dssp TSCEEEEECCCSSCBCEEEEEEECCT---------TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEE
T ss_pred CCcEEeeeecccCcccCcceeeEecc---------cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceE
Confidence 99999999998877667789999965 346799988888877 999999998 56889999999999
Q ss_pred EEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEE-ecceee
Q 041951 377 TVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEI-LKTEAV 455 (726)
Q Consensus 377 ~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 455 (726)
+|++|+........+.+|.++++..+|..|++|++++. +++++| +..+..
T Consensus 311 ~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~-----------------------------~~~a~i~~~~t~~ 361 (649)
T 3i6s_A 311 IFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSV-----------------------------TPTATITFQETYL 361 (649)
T ss_dssp EEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCS-----------------------------SCEEEEEEEEEEC
T ss_pred EEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCC-----------------------------CceEEEeecceee
Confidence 99999985444677899999999999999999999999 999999 888888
Q ss_pred cCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCC-CCCcceeeccccchhHHHHHHHHHHHh
Q 041951 456 KDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDK-RKPKYNIISGTSMSCPHAAGVAAYVKS 534 (726)
Q Consensus 456 ~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q 534 (726)
+..+++.++.||||||+...++++||||+|||++|+++++....+.....+. +...|..+||||||||||||++|||||
T Consensus 362 ~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks 441 (649)
T 3i6s_A 362 DTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKA 441 (649)
T ss_dssp CCSSCCEECTTSCCSSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcccccCCCCCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHH
Confidence 8888999999999999987789999999999999999998865443333332 346899999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHccccccCCCCCCC---------CCcccCCCCCCccccCCCCceecCChhhHHHHHhhCCCCCcce
Q 041951 535 FHPDWSPSAIKSAIMTTAWAMNSSKNTE---------AEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCNIGYDESKV 605 (726)
Q Consensus 535 ~~P~ls~~~ik~~L~~TA~~~~~~~~~~---------~~~~~G~G~in~~~Al~~~lv~~~~~~~~~~~l~~~~~~~~~~ 605 (726)
+||+|||++||++||+||++++..+.+. .++.||+|+||+.+|++||||||++.+||+.|||++||+.++|
T Consensus 442 ~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i 521 (649)
T 3i6s_A 442 AHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQF 521 (649)
T ss_dssp HSTTCCHHHHHHHHHHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHH
T ss_pred hCCCCCHHHHHHHHhcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccc
Confidence 9999999999999999999988755432 5789999999999999999999999999999999999999999
Q ss_pred EEecCCCCc--cCCCCCCCCCCCCCCCcEEEee-cCCCceE--EEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEE
Q 041951 606 RIISGDGSA--CPKGSDKAPPKDLNYPSMAAQV-SSGKSFV--VNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLS 680 (726)
Q Consensus 606 ~~~~~~~~~--~~~~~~~~~~~~ln~ps~~~~~-~~~~~~~--~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~ 680 (726)
+.|++.++. |++ .+.+||||||++.. +.+.... ++|+|||||||+..++|++++++|.|++|+|+|++|+
T Consensus 522 ~~~~~~~~~~~C~~-----~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~ 596 (649)
T 3i6s_A 522 KTIARSSASHNCSN-----PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILV 596 (649)
T ss_dssp HHHHTTTSCC-CCC-----CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEE
T ss_pred eeeecCCCcCCCCC-----chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEE
Confidence 999998877 975 46799999999987 4431112 8999999999998999999999999999999999999
Q ss_pred EeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEc--CCeeEEeEEEEEc
Q 041951 681 FKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSD--GNHWVRSPIVVHA 726 (726)
Q Consensus 681 ~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~--~~~~v~~P~~v~~ 726 (726)
|++.+|+++|+|||+........+.||+|+|+| ++|.||+||+|++
T Consensus 597 f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~ 644 (649)
T 3i6s_A 597 FKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSP 644 (649)
T ss_dssp ECC-CCEEEEEEEEEECCC---CCCEEEEEEEETTSCCEEEEEEEEEE
T ss_pred EecCCCEEEEEEEEEecccCCCceEEEEEEEEcCCCCeEEEEeEEEEE
Confidence 988999999999999876556678999999999 8999999999974
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-114 Score=999.48 Aligned_cols=607 Identities=52% Similarity=0.895 Sum_probs=516.1
Q ss_pred ccCCccccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCC-C--
Q 041951 81 TTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTP-A-- 157 (726)
Q Consensus 81 ~~~s~~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~-~-- 157 (726)
|+++|+|+|++..+|.+..+|+||+|||||||||++||+|+|+++++++.+|+|.|+.+.+|.||+|++++++|.. +
T Consensus 1 tt~s~~flGl~~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~~~ 80 (621)
T 3vta_A 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPI 80 (621)
T ss_dssp CCSHHHHTTCCTTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSSSC
T ss_pred CCCChhHcCCCccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCCcc
Confidence 5899999999878899999999999999999999999999999999999999999999999999999999999932 2
Q ss_pred ---CCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEE
Q 041951 158 ---PYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVI 234 (726)
Q Consensus 158 ---~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVI 234 (726)
+..+++|.+||||||||||||+.+.+.+.+|++.+.++||||+|+|++||+|++.||..+++++||++|+++|+|||
T Consensus 81 ~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~a~~~g~dVi 160 (621)
T 3vta_A 81 SPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDII 160 (621)
T ss_dssp CTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHHHHHHHHTCSEE
T ss_pred CCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 35678899999999999999999888888888889999999999999999999988999999999999999999999
Q ss_pred EEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEE
Q 041951 235 TISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYS 312 (726)
Q Consensus 235 nlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 312 (726)
|||||+.....+..+++++++++|.++|+++|+||||+|+... ++.+||+++|++++.++.|...+.++++..+.+.+
T Consensus 161 n~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~~~s 240 (621)
T 3vta_A 161 SLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240 (621)
T ss_dssp EECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEEEBC
T ss_pred EecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceeeeee
Confidence 9999998666778889999999999999999999999998877 88899999999999999999999999999998887
Q ss_pred eccCCCCCceeeEEEccCCcccc-cccCCCCcCCCCCCCCcccccEEEEee--ccchHHHHhcCceEEEEeccCCCccce
Q 041951 313 INSFAMKGRRFPLVYGKEISESC-QELSSQECNPGCVNGSLVKGKIVICQS--FKNYPEVRKAGAAGTVLLNNEFDKVSF 389 (726)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~gkiv~~~~--~~~~~~~~~~G~~g~i~~~~~~~~~~~ 389 (726)
+.... ...+++++........ .......|.+..+++.+++|||++|++ ..+.......|+.+++++++... ...
T Consensus 241 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~~~~~~~~~~~Ga~gvi~~~~~~~-~~~ 317 (621)
T 3vta_A 241 INTFD--NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRD-YAD 317 (621)
T ss_dssp CCCSC--CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCCCHHHHHHHHTTCSEEEEECSCCS-SCC
T ss_pred cccCC--CcccccccccccccccccccccccccccccccccccceEEEEecCCChhHHhhhhcceeEEEEEecCCC-ccc
Confidence 76543 4567777765544322 344567799999999999999999998 45566778889999999887543 355
Q ss_pred eeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCC
Q 041951 390 VVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSR 469 (726)
Q Consensus 390 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~ 469 (726)
.+.+|...++..++..++.|+..+. .+.++++..........+.++.||||
T Consensus 318 ~~~lP~~~v~~~~g~~i~~~~~~~~-----------------------------~~~a~~~~~~~~~~~~~~~va~FSSr 368 (621)
T 3vta_A 318 SYPLPSSVLDPNDLLATLRYIYSIR-----------------------------SPGATIFKSTTILNASAPVVVSFSSR 368 (621)
T ss_dssp CCSSSEEEECHHHHHHHHHHHHHHS-----------------------------SCCEEECCCEEEECTTCCCBCTTSCC
T ss_pred ccccceEEECHHHHHHHHHHHhccC-----------------------------CcceEEecceEeccCCCCceeeecCC
Confidence 6789999999999999999998887 77777755555556778999999999
Q ss_pred CCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041951 470 GPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIM 549 (726)
Q Consensus 470 Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~ 549 (726)
||+...++++||||+|||++|+++++....... ......|..+||||||||||||++|||||+||+|||++||++||
T Consensus 369 GP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLm 445 (621)
T 3vta_A 369 GPNRATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALM 445 (621)
T ss_dssp CSCTTCTTSCSCCEEEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCCCCCCeeccccccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 999877899999999999999999986543221 23447899999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCcccCCCCCCccccCCCCceecCChhhHHHHHhhCCCCCcceEEecCCCCccCCCCCCCCCCCCCC
Q 041951 550 TTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCNIGYDESKVRIISGDGSACPKGSDKAPPKDLNY 629 (726)
Q Consensus 550 ~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ 629 (726)
+||++++..+.+..+++||+|+||+.+|++||||||+...||+.|||++||+.++++.+++....|+.. ......+|||
T Consensus 446 tTA~~~~~~~~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lN~ 524 (621)
T 3vta_A 446 TTASPMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSG-NTGRVWDLNY 524 (621)
T ss_dssp HTCBCCCTTTCTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC------------------------------CGGGSCC
T ss_pred hcCCcccccCCCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCC-CcCccccccc
Confidence 999999988777778999999999999999999999999999999999999999999999998889865 5566789999
Q ss_pred CcEEEeecCCCceEEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEE
Q 041951 630 PSMAAQVSSGKSFVVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASL 709 (726)
Q Consensus 630 ps~~~~~~~~~~~~~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~ 709 (726)
|||++........+++|+|||||+|....||++++++|.|++|+|+|++|+|++.||+++|+|||+.. ..+.++||+|
T Consensus 525 pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l 602 (621)
T 3vta_A 525 PSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASL 602 (621)
T ss_dssp SSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEE
T ss_pred ccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEE
Confidence 99999765544578999999999999999999999999999999999999998889999999999865 4678999999
Q ss_pred EEEcCCeeEEeEEEEE
Q 041951 710 VWSDGNHWVRSPIVVH 725 (726)
Q Consensus 710 ~~~~~~~~v~~P~~v~ 725 (726)
+|+|++|+||+||+|+
T Consensus 603 ~w~d~~h~Vr~Pi~v~ 618 (621)
T 3vta_A 603 VWSDGVHYVRSPITIT 618 (621)
T ss_dssp EEECSSCCCEEEEEEE
T ss_pred EEEcCCEEEEeCEEEE
Confidence 9999999999999997
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-81 Score=749.57 Aligned_cols=523 Identities=23% Similarity=0.281 Sum_probs=413.5
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCC-------------CcccCCceeEeee
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGG-------------KNFTCNNKIIGAR 152 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g-------------~~f~~n~k~ig~~ 152 (726)
++++++ .+|+++.+|+||+|||||||||++||+|.+ +..|++.|..+ .+..||+|+++++
T Consensus 2 d~i~~~-~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~ 74 (926)
T 1xf1_A 2 DPSQVK-TLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYH 74 (926)
T ss_dssp CTTCCH-HHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEE
T ss_pred CccccH-HHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceee
Confidence 467788 899999999999999999999999999984 34676666432 2236999999999
Q ss_pred ecCCCCCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC--CChHHHHHHHHHHhhCC
Q 041951 153 YYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG--CDSAGVLGAFDDAIADG 230 (726)
Q Consensus 153 ~~~~~~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~A~~~g 230 (726)
+|.++ ....|..||||||||||||+.+.+.+. .+.+.||||+|+|+++|+|++.+ +..+++++||++|+++|
T Consensus 75 ~~~~~--~~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~g 148 (926)
T 1xf1_A 75 DYSKD--GKTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLG 148 (926)
T ss_dssp ESCCC--SCCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccC--CCCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhC
Confidence 99543 122389999999999999987544321 23459999999999999998876 55678999999999999
Q ss_pred CcEEEEcccCCCC-CCCcccHHHHHHHHhhhCCcEEEEccCCCCCCC----------------C-CCCCCceEEEecccC
Q 041951 231 VDVITISIGGDSA-VDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL----------------T-ASVAPWLMSVAASTT 292 (726)
Q Consensus 231 ~dVInlSlG~~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~----------------~-~~~~p~vitVga~~~ 292 (726)
+||||||||+... .....+++..++++|.++|++||+||||+|... . |+.+||+|+|||++.
T Consensus 149 vdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~ 228 (926)
T 1xf1_A 149 AKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSP 228 (926)
T ss_dssp CEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBC
T ss_pred CcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEecccc
Confidence 9999999998742 345677888999999999999999999999621 1 667899999999999
Q ss_pred CceeeeEEEe-CCCeeEeeEEeccC-C-CCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEee-----cc
Q 041951 293 DRLFVDKVAL-GNGKAISGYSINSF-A-MKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQS-----FK 364 (726)
Q Consensus 293 ~~~~~~~~~~-~~g~~~~g~~~~~~-~-~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~-----~~ 364 (726)
++.+...+.+ +++....+.++... . .....+|+++.+. .|.+..+ .+++||||+|+| .+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-----------g~~~~~~--~~v~Gkivl~~rg~~~~~~ 295 (926)
T 1xf1_A 229 DKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-----------GTKEDDF--KDVKGKIALIERGDIDFKD 295 (926)
T ss_dssp SEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-----------SCSTTTT--TTCTTSEEEEECCSSCHHH
T ss_pred ccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-----------CCCccch--hhcCCeEEEEECCCCCHHH
Confidence 9999988887 55544444444321 1 2367889998653 3766555 589999999998 56
Q ss_pred chHHHHhcCceEEEEeccCCCcc----ceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhcccc
Q 041951 365 NYPEVRKAGAAGTVLLNNEFDKV----SFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYL 440 (726)
Q Consensus 365 ~~~~~~~~G~~g~i~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (726)
|..+++++|++|+|++++..... .....+|...++..++..|..
T Consensus 296 k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~-------------------------------- 343 (926)
T 1xf1_A 296 KIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD-------------------------------- 343 (926)
T ss_dssp HHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH--------------------------------
T ss_pred HHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh--------------------------------
Confidence 78899999999999999875433 345679999999999987763
Q ss_pred ccCCCeEEE-ecce--eecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeecc
Q 041951 441 DYRTPVAEI-LKTE--AVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISG 517 (726)
Q Consensus 441 ~~~~~~~~i-~~~~--~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 517 (726)
++..++ +..+ .......+.++.||||||+. ++++||||+|||++|+++++. +.|..+||
T Consensus 344 ---~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SG 405 (926)
T 1xf1_A 344 ---NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSG 405 (926)
T ss_dssp ---CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEES
T ss_pred ---CCceEEEecccceecccCCcceeccccCCCCCC--CCccCceEECCCCCEEeeccC-------------CcceecCc
Confidence 223333 2222 24455678999999999997 999999999999999999975 57999999
Q ss_pred ccchhHHHHHHHHHHH----hcCCCCCHHH----HHHHHHccccccCCCCC--CCCCcccCCCCCCccccCCCCceecCC
Q 041951 518 TSMSCPHAAGVAAYVK----SFHPDWSPSA----IKSAIMTTAWAMNSSKN--TEAEFAYGSGHVNPVKAINPGLVYETF 587 (726)
Q Consensus 518 TSmAaP~VAG~aALl~----q~~P~ls~~~----ik~~L~~TA~~~~~~~~--~~~~~~~G~G~in~~~Al~~~lv~~~~ 587 (726)
||||||||||++|||+ +.||+|+|+| ||++||+||+++...+. ..++++||+|+||+.+|+++.+
T Consensus 406 TSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~~----- 480 (926)
T 1xf1_A 406 TSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATM----- 480 (926)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGGGTEECCHHHHTTCBCCHHHHHHCSE-----
T ss_pred cchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCcccCCCCccCChhccCCCccCHHHhcCCCe-----
Confidence 9999999999999995 5699999997 99999999999865321 1247899999999999999854
Q ss_pred hhhHHHHHhhCCCCCcceEEecCCCCccCCCCCCCCCCCCCCCcEEEeecCCCceEEEEEEEEEEcCCC--CeeEEEEEe
Q 041951 588 KQDYIKMLCNIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGVA--NSTYRAKVL 665 (726)
Q Consensus 588 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~rtv~n~g~~--~~ty~~~~~ 665 (726)
|||..+++.. +|.+..+. ...+++|||||+|+. ..+|++++.
T Consensus 481 ------~l~~~~~~~~---------------------------~i~l~~~~---~~~~~~~tv~N~g~~~~~~~y~~~v~ 524 (926)
T 1xf1_A 481 ------YVTDKDNTSS---------------------------KVHLNNVS---DKFEVTVNVHNKSDKPQELYYQATVQ 524 (926)
T ss_dssp ------EEEESSSSCS---------------------------CEEEEEEC---SEEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred ------EEEcCCCCcc---------------------------eeeccccC---ccEEEEEEEEEeCCCceeEEEEEEEE
Confidence 6787654322 34454443 267899999999985 467888876
Q ss_pred c--CCceEEEEEcCEEEEe-------eCCcEEEEEEEEEeec--------CCCCCeEEEEEEEE--cCCee-EEeEEEEE
Q 041951 666 Q--NSKISIKVVPDVLSFK-------SLNEKKSFSVTVTGKG--------VPQGAIVSASLVWS--DGNHW-VRSPIVVH 725 (726)
Q Consensus 666 ~--~~g~~v~v~p~~l~~~-------~~g~~~~~~vt~~~~~--------~~~~~~~~G~~~~~--~~~~~-v~~P~~v~ 725 (726)
. |.+..++|+|..|.|. ++||+++|+|||++.. ++.+.++||+|+|+ ++.|. ||+||++.
T Consensus 525 ~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~ 604 (926)
T 1xf1_A 525 TDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGF 604 (926)
T ss_dssp EEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred eccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEE
Confidence 5 6788888888766544 4599999999999862 23556899999999 56564 99999985
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-61 Score=544.97 Aligned_cols=357 Identities=28% Similarity=0.428 Sum_probs=289.4
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCHHHHHHH-----------HcCCCeEEE
Q 041951 3 VYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKL-----------ASMEKVVSV 71 (726)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L-----------~~~p~V~~v 71 (726)
.|||.|++... .+...++++.. ..+++++| ..|+||+++++.+++++| +++|+|++|
T Consensus 37 ~~iV~~~~~~~-----~~~~~~~~~~~------g~~v~~~~-~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v 104 (539)
T 3afg_A 37 STIIMFDNQAD-----KEKAVEILDFL------GAKIKYNY-HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFI 104 (539)
T ss_dssp EEEEEESSHHH-----HHHHHHHHHHH------TCEEEEEC-SSSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEE
T ss_pred EEEEEECCCCC-----HHHHHHHHHhc------CCeEEEEe-eeeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEE
Confidence 59999985432 12233344443 35899999 479999999999999999 899999999
Q ss_pred Eeceeeccccc-----CCccccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCc
Q 041951 72 FPSRTLQLHTT-----RSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNN 146 (726)
Q Consensus 72 ~~~~~~~~~~~-----~s~~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~ 146 (726)
++++.+++... .....++++ .+|..+++|+||+|||||||||++||+|.+
T Consensus 105 ~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~G~gv~VaViDtGid~~Hpdl~~------------------------ 159 (539)
T 3afg_A 105 QEDYVVKVAVETEGLDESAAQVMAT-NMWNLGYDGSGITIGIIDTGIDASHPDLQG------------------------ 159 (539)
T ss_dssp EECCEEECC-----------CCBCS-CCBCCSCCCTTCEEEEEESBCCTTSGGGTT------------------------
T ss_pred EecccccccCccccCCccccccCcH-hHHhcCCCCCCcEEEEEecCCCCCChHHhC------------------------
Confidence 99998886532 223445666 899999999999999999999999999974
Q ss_pred eeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHH
Q 041951 147 KIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDD 225 (726)
Q Consensus 147 k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ 225 (726)
++++.++|.++ ...+.|.+||||||||||+|+... ..|.+.||||+|+|+++|++++.| +..+++++||+|
T Consensus 160 ~i~~~~d~~~~-~~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~ 231 (539)
T 3afg_A 160 KVIGWVDFVNG-KTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDW 231 (539)
T ss_dssp TEEEEEETTTC-CSSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHH
T ss_pred CEeeeEECCCC-CCCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHH
Confidence 36666777432 245678999999999999987421 123358999999999999998877 778899999999
Q ss_pred HhhC----CCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceee
Q 041951 226 AIAD----GVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFV 297 (726)
Q Consensus 226 A~~~----g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~ 297 (726)
|+++ |++|||||||... .....+++..+++++.++|++||+||||+|.... |+.++++|+|||++.+
T Consensus 232 a~~~~~~~g~~Vin~SlG~~~-~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~---- 306 (539)
T 3afg_A 232 AVQNKDKYGIKVINLSLGSSQ-SSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY---- 306 (539)
T ss_dssp HHHTHHHHTEEEEEECCCCCS-CCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT----
T ss_pred HHhhhhhcCCcEEEeCCCCCC-CCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC----
Confidence 9976 8999999999883 2445678889999999999999999999997543 8889999999985421
Q ss_pred eEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEE
Q 041951 298 DKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGT 377 (726)
Q Consensus 298 ~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~ 377 (726)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecC
Q 041951 378 VLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKD 457 (726)
Q Consensus 378 i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 457 (726)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCC
Q 041951 458 FDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHP 537 (726)
Q Consensus 458 ~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P 537 (726)
+.++.||||||+. ++++||||+|||++|+++++..... .+.....|..++|||||||||||++|||+|++|
T Consensus 307 ---~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p 377 (539)
T 3afg_A 307 ---DVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMATPHVAGIAALLLQAHP 377 (539)
T ss_dssp ---SCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC----SEECSSSEEEECSHHHHHHHHHHHHHHHHHHCT
T ss_pred ---cccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC----CCCCcccccccCchHHHHHHHHHHHHHHHHHCC
Confidence 3478999999998 8999999999999999998653210 011124699999999999999999999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCCccccCCC
Q 041951 538 DWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINP 580 (726)
Q Consensus 538 ~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~ 580 (726)
+|++++||++|++||+++...+. .+..||+|+||+.+|++.
T Consensus 378 ~~s~~~vk~~L~~tA~~~~~~~~--~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 378 SWTPDKVKTALIETADIVKPDEI--ADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp TCCHHHHHHHHHHHSBCSSGGGC--SBTTTBTCBCCHHHHHTG
T ss_pred CCCHHHHHHHHHhhCccCCCCCC--CccCccCCccCHHHHhhh
Confidence 99999999999999998864332 267899999999999985
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-58 Score=506.56 Aligned_cols=332 Identities=23% Similarity=0.335 Sum_probs=273.6
Q ss_pred cEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCHHHHHHHHcCCCeEEEEeceeecccc
Q 041951 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTLQLHT 81 (726)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~~~ 81 (726)
.+|||.|++... .+++++.. +.+++++|. .|++|+++++.+++++|+++|+|++|++++.++++.
T Consensus 3 ~~~iV~~~~~~~--------~~~~~~~~------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~ 67 (395)
T 2z2z_A 3 IRVIVSVDKAKF--------NPHEVLGI------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLG 67 (395)
T ss_dssp EEEEEEECTTTC--------CHHHHHHT------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECC
T ss_pred EEEEEEECCCcc--------HHHHHHHc------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccC
Confidence 579999997643 23344433 458999995 699999999999999999999999999999887643
Q ss_pred cC--------------Cc--cccCCCccccccCCCCCC--cEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCccc
Q 041951 82 TR--------------SW--DFMGLNLSITRKRSVESN--LIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFT 143 (726)
Q Consensus 82 ~~--------------s~--~~~g~~~~~~~~~~~G~G--VvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~ 143 (726)
.. .| +.++++ .+|..+ +|+| |+|||||||||++||+|.++
T Consensus 68 ~~~~~~~~~~~~~~~~~w~~~~i~~~-~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~-------------------- 125 (395)
T 2z2z_A 68 KPSWLGGGSTQPAQTIPWGIERVKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN-------------------- 125 (395)
T ss_dssp EECC------CCSCCCCHHHHHTTCG-GGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG--------------------
T ss_pred CCCcccccccCccccCCcchhhcCHH-HHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc--------------------
Confidence 21 22 224555 899988 9999 99999999999999999843
Q ss_pred CCceeEeeeecCCCC----CCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHH
Q 041951 144 CNNKIIGARYYTPAP----YDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAG 218 (726)
Q Consensus 144 ~n~k~ig~~~~~~~~----~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~ 218 (726)
+...++|..+. ..+..|..||||||||||+|.. +..|+ .||||+|+|+.+|++++.| +..++
T Consensus 126 ----~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~----n~~g~-----~GvAp~a~l~~~kv~~~~g~~~~~~ 192 (395)
T 2z2z_A 126 ----IAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALN----NDIGV-----VGVAPGVQIYSVRVLDARGSGSYSD 192 (395)
T ss_dssp ----EEEEEECGGGCCBCCHHHHBCSSSHHHHHHHHHHCCC----SSSSC-----CCSSTTCEEEEEECSCTTSEEEHHH
T ss_pred ----cccCccccCCcccCCCCCCCCCCCCHHHHHHHHHeec----CCCce-----EEECCCCEEEEEEEecCCCCccHHH
Confidence 33334442111 1124688999999999999873 22343 8999999999999998877 77889
Q ss_pred HHHHHHHHhhC--------------------CCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC-
Q 041951 219 VLGAFDDAIAD--------------------GVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT- 277 (726)
Q Consensus 219 i~~ai~~A~~~--------------------g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~- 277 (726)
+++||+||+++ +++|||||||.... ...+..++.++.++|+++|+||||+|....
T Consensus 193 i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~----~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~ 268 (395)
T 2z2z_A 193 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD----DSYLYDMIIQAYNAGIVIVAASGNEGAPSPS 268 (395)
T ss_dssp HHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC----CHHHHHHHHHHHHTTCEEEEECCSSCCSSCC
T ss_pred HHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC----CHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Confidence 99999999987 99999999998732 356777788889999999999999998654
Q ss_pred -CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCccccc
Q 041951 278 -ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGK 356 (726)
Q Consensus 278 -~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gk 356 (726)
|+.+|++|+|||++.+
T Consensus 269 ~Pa~~~~vi~Vga~~~~--------------------------------------------------------------- 285 (395)
T 2z2z_A 269 YPAAYPEVIAVGAIDSN--------------------------------------------------------------- 285 (395)
T ss_dssp BTTTSTTEEEEEEECTT---------------------------------------------------------------
T ss_pred CccCCCCEEEEEEecCC---------------------------------------------------------------
Confidence 8999999999986422
Q ss_pred EEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehh
Q 041951 357 IVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIH 436 (726)
Q Consensus 357 iv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (726)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeec
Q 041951 437 SLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIIS 516 (726)
Q Consensus 437 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 516 (726)
+.++.||++|| +|+|||++|+++++. +.|..++
T Consensus 286 ------------------------~~~a~fS~~G~----------~v~APG~~i~s~~~~-------------~~y~~~s 318 (395)
T 2z2z_A 286 ------------------------DNIASFSNRQP----------EVSAPGVDILSTYPD-------------DSYETLM 318 (395)
T ss_dssp ------------------------SCBCTTSCSSC----------SEEEECSSEEEEETT-------------TEEEEEE
T ss_pred ------------------------CCCCcccCCCC----------CEEeCCCCeeeecCC-------------CceEecC
Confidence 35789999997 679999999999875 6799999
Q ss_pred cccchhHHHHHHHHHHHhcCC-------------CCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCCccccCCC
Q 041951 517 GTSMSCPHAAGVAAYVKSFHP-------------DWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINP 580 (726)
Q Consensus 517 GTSmAaP~VAG~aALl~q~~P-------------~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~ 580 (726)
|||||||||||++|||+|++| .|++.+||++|++||+++...+. +..||||+||+.+|++.
T Consensus 319 GTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g~---~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 319 GTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGW---DADYGYGVVRAALAVQA 392 (395)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSSS---BTTTBTCBCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCCC---CCCccCceeCHHHHHHH
Confidence 999999999999999999999 99999999999999999875542 67899999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-56 Score=499.26 Aligned_cols=331 Identities=21% Similarity=0.280 Sum_probs=262.3
Q ss_pred ccceEEEeccceeEEEEEeCHHHHHHHHc-CCCeEEEEeceeecccccC-------------CccccCCCc--cccccCC
Q 041951 36 EDILVRSYRRSFNGFAAKLTVDERQKLAS-MEKVVSVFPSRTLQLHTTR-------------SWDFMGLNL--SITRKRS 99 (726)
Q Consensus 36 ~~~i~~~y~~~~~g~s~~l~~~~~~~L~~-~p~V~~v~~~~~~~~~~~~-------------s~~~~g~~~--~~~~~~~ 99 (726)
+.+++++| ..|++|+++++++++++|++ +|+|++|++++.+++.... .|.+..+.. .+|..+.
T Consensus 65 g~~v~~~~-~~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~ 143 (471)
T 3t41_A 65 SLNVVYNI-PELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLP 143 (471)
T ss_dssp TCEEEEEE-GGGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCC
T ss_pred CCEEEEec-CCccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhccC
Confidence 45788888 56999999999999999999 9999999999888775432 233333322 6899999
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhcccc
Q 041951 100 VESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGN 179 (726)
Q Consensus 100 ~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~ 179 (726)
+|+||+|||||||||++||+|.+.- |.+. .+|.....+.+.......+...+.|..||||||||||+|+
T Consensus 144 ~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~ 212 (471)
T 3t41_A 144 KHANTKIAIIDTGVMKNHDDLKNNF-------STDS----KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSAN 212 (471)
T ss_dssp SSCCCCEEEEESCCCTTCTTTTTTB-------CTTC----EECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCB
T ss_pred CCCCcEEEEEeCCCCCCChhHhcCc-------ccCC----cccccCCCccCCCcccCCCCCCCcCCCCccchhhheeecC
Confidence 9999999999999999999998641 1110 0010000010000111112345678999999999999986
Q ss_pred CCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCCC------------Cc
Q 041951 180 EVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVD------------FS 247 (726)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~------------~~ 247 (726)
.. ..||||+|+|+.+|++++.++...++++||++|+++|++|||||||...... ..
T Consensus 213 g~------------~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~ 280 (471)
T 3t41_A 213 GK------------LIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVE 280 (471)
T ss_dssp SS------------SBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHH
T ss_pred Cc------------eeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchh
Confidence 31 3899999999999999886688999999999999999999999999741100 23
Q ss_pred ccHHHHHHHHhhhCCcEEEEccCCCCCCC--------------------CCCCCCceEEEecccCCceeeeEEEeCCCee
Q 041951 248 EDAISIGAFHAMAKGVLTLNSAGNSGPGL--------------------TASVAPWLMSVAASTTDRLFVDKVALGNGKA 307 (726)
Q Consensus 248 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~--------------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 307 (726)
.+.+..++..+.++|++||+||||+|... .|+.+|++|+|||++.+
T Consensus 281 ~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~~-------------- 346 (471)
T 3t41_A 281 YDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQK-------------- 346 (471)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECTT--------------
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCCC--------------
Confidence 35678888889999999999999999763 16778889999886422
Q ss_pred EeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCcc
Q 041951 308 ISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKV 387 (726)
Q Consensus 308 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~ 387 (726)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeeccc
Q 041951 388 SFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFS 467 (726)
Q Consensus 388 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fS 467 (726)
+.++.||
T Consensus 347 -------------------------------------------------------------------------~~~a~fS 353 (471)
T 3t41_A 347 -------------------------------------------------------------------------SNLSEFS 353 (471)
T ss_dssp -------------------------------------------------------------------------SSBCTTC
T ss_pred -------------------------------------------------------------------------CCCCCcc
Confidence 3578999
Q ss_pred CCCCCCCCCCCccCceEeCCCc----------------------EEeecCCCccCCcCcCCCCCCcceeeccccchhHHH
Q 041951 468 SRGPNAIVPEILKPDISAPGVD----------------------ILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHA 525 (726)
Q Consensus 468 S~Gp~~~~~~~~KPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 525 (726)
++||+. |||+|||++ |+++.+. +.|..++|||||||||
T Consensus 354 ~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~-------------~~~~~~sGTS~AaP~V 413 (471)
T 3t41_A 354 NFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN-------------GRYIYQAGTALATPKV 413 (471)
T ss_dssp CBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT-------------SSEEEECSHHHHHHHH
T ss_pred CCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCC-------------CCEEeecchHHHHHHH
Confidence 999963 599999987 8888765 6799999999999999
Q ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCCccccCCCC
Q 041951 526 AGVAAYVKSFHP-DWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPG 581 (726)
Q Consensus 526 AG~aALl~q~~P-~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~~ 581 (726)
||++|||+|++| .++|++||++|++||++.... .+..||||+||+.+|++..
T Consensus 414 AG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~~----~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 414 SGALALIIDKYHLEKHPDKAIELLYQHGTSKNNK----PFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp HHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSCC----CHHHHTTCBBCHHHHTTTT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCCC----CcCccccChhCHHHHHHHH
Confidence 999999999999 899999999999999987652 3679999999999999853
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-54 Score=479.74 Aligned_cols=373 Identities=24% Similarity=0.340 Sum_probs=268.8
Q ss_pred ccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecC-CCCCCCCCCC
Q 041951 87 FMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYT-PAPYDTARDE 165 (726)
Q Consensus 87 ~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~-~~~~~~~~D~ 165 (726)
.++++ .+|..+ |+||+|||||||||++||+|.+. ++..+++. ..+...+.|.
T Consensus 10 ~i~~~-~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~------------------------~~~~~~~~~~~~~~~~~d~ 62 (441)
T 1y9z_A 10 FVGAT-VLSDSQ--AGNRTICIIDSGYDRSHNDLNAN------------------------NVTGTNNSGTGNWYQPGNN 62 (441)
T ss_dssp HTTCS-SSCCTT--GGGCEEEEEESCCCTTSTTTTTS------------------------EEEECCCTTSCCTTCCCSS
T ss_pred hcChh-hhhhcC--CCCcEEEEEcCCCCCCChhHhcC------------------------cccCcccCCCCCCCCCCCC
Confidence 35566 889865 77999999999999999999853 11222221 1123456788
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCc--EEEEEEeeCCCC-CChHHHHHHHHHHhhC-CCcEEEEcccCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSG--RIAAYKVCFPGG-CDSAGVLGAFDDAIAD-GVDVITISIGGD 241 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A--~L~~~kv~~~~g-~~~~~i~~ai~~A~~~-g~dVInlSlG~~ 241 (726)
.||||||||||+|... ..|+ .||||+| +|+.+|++++.+ +..+++++||+||+++ |++|||||||..
T Consensus 63 ~gHGT~vAgiia~~~~----~~g~-----~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~~ 133 (441)
T 1y9z_A 63 NAHGTHVAGTIAAIAN----NEGV-----VGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGS 133 (441)
T ss_dssp CCHHHHHHHHHHCCCS----SSBC-----CCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBS
T ss_pred CCcHHHHHHHHhcccC----CCCc-----eEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCCCC
Confidence 9999999999999742 2343 8999995 999999998877 7888999999999999 999999999987
Q ss_pred CCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCC---------------
Q 041951 242 SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGN--------------- 304 (726)
Q Consensus 242 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~--------------- 304 (726)
.. ...+..++.++.++|++||+||||+|.... |+..|++|+|||++.+.....+...+.
T Consensus 134 ~~----~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~~ 209 (441)
T 1y9z_A 134 GS----TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTV 209 (441)
T ss_dssp CC----BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEEC
T ss_pred CC----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeeccc
Confidence 32 245667778899999999999999998655 899999999999987654322211111
Q ss_pred ----Ce----eEeeEEeccCCCC--Cceee--EEEccCCcccccccCCCCcCCC--CCCCCcccccEEEEeec-------
Q 041951 305 ----GK----AISGYSINSFAMK--GRRFP--LVYGKEISESCQELSSQECNPG--CVNGSLVKGKIVICQSF------- 363 (726)
Q Consensus 305 ----g~----~~~g~~~~~~~~~--~~~~~--l~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~gkiv~~~~~------- 363 (726)
+. .+.|.+++..... ...++ +.|...............|... .++..+++|||++|+|.
T Consensus 210 ~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~ 289 (441)
T 1y9z_A 210 TVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSY 289 (441)
T ss_dssp STTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSSSC
T ss_pred cCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEeccccCcccc
Confidence 11 1122222211000 00000 0111100000001123457643 55778899999999883
Q ss_pred ---cchHHHHhcCceEEEEeccCCCcc---------ceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehh
Q 041951 364 ---KNYPEVRKAGAAGTVLLNNEFDKV---------SFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFF 431 (726)
Q Consensus 364 ---~~~~~~~~~G~~g~i~~~~~~~~~---------~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (726)
+|..+++++|+.++|++++..... ...+.+|.+.++..+|..|+.++....
T Consensus 290 ~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~----------------- 352 (441)
T 1y9z_A 290 PEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQST----------------- 352 (441)
T ss_dssp THHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSEE-----------------
T ss_pred cHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCCc-----------------
Confidence 467889999999999998865321 234578999999999998876542211
Q ss_pred heehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCc
Q 041951 432 QKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPK 511 (726)
Q Consensus 432 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 511 (726)
.+ ++... +.
T Consensus 353 --------------------------------------------------t~--------~~~~~-------------~~ 361 (441)
T 1y9z_A 353 --------------------------------------------------TV--------SNQGN-------------QD 361 (441)
T ss_dssp --------------------------------------------------EE--------EEEEE-------------ES
T ss_pred --------------------------------------------------cc--------ccccC-------------CC
Confidence 11 11111 57
Q ss_pred ceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCCccccCCCCceecCChhhH
Q 041951 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDY 591 (726)
Q Consensus 512 y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~~~~ 591 (726)
|..+||||||||||||++|||+|+||+|||++||++||+||++++..+. +..||+|+||+.+|+ ||
T Consensus 362 y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~---~~~~G~G~vn~~~A~-----------~~ 427 (441)
T 1y9z_A 362 YEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR---DNQTGYGMINAVAAK-----------AY 427 (441)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSC---BTTTBTCBCCHHHHH-----------HH
T ss_pred ceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCCC---cccccccccCHHHHH-----------HH
Confidence 9999999999999999999999999999999999999999999877653 568999999999995 59
Q ss_pred HHHHhhCCCC
Q 041951 592 IKMLCNIGYD 601 (726)
Q Consensus 592 ~~~l~~~~~~ 601 (726)
+.|||+++.+
T Consensus 428 ~~~lc~~~~~ 437 (441)
T 1y9z_A 428 LDESCTGPTD 437 (441)
T ss_dssp HHHCTTCC--
T ss_pred HHhhhcCCCC
Confidence 9999998753
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-56 Score=506.00 Aligned_cols=331 Identities=18% Similarity=0.225 Sum_probs=59.2
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCHHHHHHHHcCCCeEEEEeceeeccccc
Q 041951 3 VYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTLQLHTT 82 (726)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~~~~ 82 (726)
+|||.|++... ......|.+.|+..........++++.|+..|+||+++++.+++++|+++|+|++|++++.+... .
T Consensus 77 ~YIV~lk~~~~--~~~~~~~~~~l~a~~~~~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~-~ 153 (692)
T 2p4e_P 77 TYVVVLKEETH--LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ-S 153 (692)
T ss_dssp EEEEEECTTCC--HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC--
T ss_pred cEEEEECCCCC--HHHHHHHHHHHHHHHhhcccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC-C
Confidence 89999998776 33333344455444332333568999999999999999999999999999999999999987652 2
Q ss_pred CCccccCCCc-----cccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC
Q 041951 83 RSWDFMGLNL-----SITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA 157 (726)
Q Consensus 83 ~s~~~~g~~~-----~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~ 157 (726)
..|.+..+.. ..|..+.+|+||+|||||||||++||+|.+.-. |.+ .++..+. ....|
T Consensus 154 ~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~~-----~~~~~d~---dg~~~--- 216 (692)
T 2p4e_P 154 IPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VTD-----FENVPEE---DGTRF--- 216 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ecc-----cccccCC---CCCcc---
Confidence 3454433321 368888999999999999999999999986411 100 0000000 00000
Q ss_pred CCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhC------C
Q 041951 158 PYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIAD------G 230 (726)
Q Consensus 158 ~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~------g 230 (726)
...+.|.+||||||||||+|+. .||||+|+|+++|++++.| ++.+++++||+|++++ +
T Consensus 217 -~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g 281 (692)
T 2p4e_P 217 -HRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVG 281 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCC
Confidence 1346789999999999999873 7999999999999998876 7788999999999986 8
Q ss_pred CcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCee
Q 041951 231 VDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKA 307 (726)
Q Consensus 231 ~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 307 (726)
++|||||||+.. ...+..++.++.++|++||+||||+|.+.. |+.+|++|+|||++.+...
T Consensus 282 ~~VINmSlGg~~-----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~----------- 345 (692)
T 2p4e_P 282 PLVVLLPLAGGY-----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP----------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEecCCCCC-----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc-----------
Confidence 999999999762 345666677888999999999999998654 8889999999987533100
Q ss_pred EeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCcc
Q 041951 308 ISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKV 387 (726)
Q Consensus 308 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~ 387 (726)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeeccc
Q 041951 388 SFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFS 467 (726)
Q Consensus 388 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fS 467 (726)
...-+.||
T Consensus 346 ------------------------------------------------------------------------a~~ss~fS 353 (692)
T 2p4e_P 346 ------------------------------------------------------------------------VTLGTLGT 353 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------------cccccccC
Confidence 00012389
Q ss_pred CCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 041951 468 SRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSA 547 (726)
Q Consensus 468 S~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~ 547 (726)
++|| ||||+|||++|+++++... +.|..++|||||||||||++|||++++|+|++++||++
T Consensus 354 n~G~--------~vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~ 414 (692)
T 2p4e_P 354 NFGR--------CVDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQR 414 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCC--------ceeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 9998 4599999999999987531 57899999999999999999999999999999999999
Q ss_pred HHcccccc
Q 041951 548 IMTTAWAM 555 (726)
Q Consensus 548 L~~TA~~~ 555 (726)
|++||.+.
T Consensus 415 L~~tA~~~ 422 (692)
T 2p4e_P 415 LIHFSAKD 422 (692)
T ss_dssp --------
T ss_pred HHHhcccc
Confidence 99999764
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-54 Score=492.03 Aligned_cols=364 Identities=23% Similarity=0.266 Sum_probs=270.2
Q ss_pred cEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCH---H-HHHHHHc--CCCeEEEEece
Q 041951 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTV---D-ERQKLAS--MEKVVSVFPSR 75 (726)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~---~-~~~~L~~--~p~V~~v~~~~ 75 (726)
.+|||.|++... .+++++.. ..++++++ ..+++++++++. + .+++|++ +|+|++|+|+.
T Consensus 32 ~~~IV~~k~~~~--------~~~~~~~~------g~~v~~~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~ 96 (671)
T 1r6v_A 32 GKILVGYNDRSE--------VDKIVKAV------NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSY 96 (671)
T ss_dssp TEEEEEESSHHH--------HHHHHHHH------TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCB
T ss_pred ccEEEEECCCcC--------HHHHHHhc------CCeEEEEc-CCCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCe
Confidence 579999985322 23344333 34788888 779999999864 3 3566764 89999999997
Q ss_pred eecccc----c--------------------------CCc--cccCCCccc-cccCCCCCCcEEEEEeccCCCCCCCCCC
Q 041951 76 TLQLHT----T--------------------------RSW--DFMGLNLSI-TRKRSVESNLIVGVIDTGIWPESESFSD 122 (726)
Q Consensus 76 ~~~~~~----~--------------------------~s~--~~~g~~~~~-~~~~~~G~GVvVaVIDtGid~~Hp~f~d 122 (726)
.+++.. . ..| +.++++ .+ |+. .+|+||+|||||||||++||+|.+
T Consensus 97 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~-~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~ 174 (671)
T 1r6v_A 97 KRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVT-QQLWEE-ASGTNIIVAVVDTGVDGTHPDLEG 174 (671)
T ss_dssp CCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCC-HHHHHH-CSCTTCEEEEEESCCBTTSGGGTT
T ss_pred EEEeccccccCcccccccccccccccccccccccccccCCchhccCCc-hhhhhc-cCCCCCEEEEEeCCCCCCCccccc
Confidence 654321 0 011 123444 56 888 899999999999999999999985
Q ss_pred CCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcE
Q 041951 123 EGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGR 202 (726)
Q Consensus 123 ~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~ 202 (726)
+- +.+ .++..+.. .. ...+..|.+||||||||||+|.. +..|+ .||||+|+
T Consensus 175 ~~-------~~g-----~~~~~~~~------~p--~~~d~~d~~gHGThVAGiIAa~~----ng~gv-----~GVAP~A~ 225 (671)
T 1r6v_A 175 QV-------IAG-----YRPAFDEE------LP--AGTDSSYGGSAGTHVAGTIAAKK----DGKGI-----VGVAPGAK 225 (671)
T ss_dssp TB-------CCE-----EEGGGTEE------EC--TTCBCCTTCSHHHHHHHHHHCCC----SSSSC-----CCSCTTSE
T ss_pred cE-------Eec-----ccccCCCc------CC--CCCCCccCCCcchhhhhhhhccC----CCCce-----EEECCCCE
Confidence 41 111 11100000 00 01234467899999999999973 22344 89999999
Q ss_pred EEEEEeeCC------CC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCC
Q 041951 203 IAAYKVCFP------GG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPG 275 (726)
Q Consensus 203 L~~~kv~~~------~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~ 275 (726)
|+.+|+++. .+ .....+++||+||+++|++|||||||+.. ....+..++..|.++|+++|+||||+|..
T Consensus 226 I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~ 301 (671)
T 1r6v_A 226 IMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNNTSD 301 (671)
T ss_dssp EEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCSSS
T ss_pred EEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 999999986 23 34567899999999999999999999872 24567788888999999999999999987
Q ss_pred CC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCc
Q 041951 276 LT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSL 352 (726)
Q Consensus 276 ~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~ 352 (726)
.. |+..|++|+|||++.+..
T Consensus 302 ~~~~yPA~~~~VItVgA~d~~g~--------------------------------------------------------- 324 (671)
T 1r6v_A 302 SHHQYPAGYPGVIQVAALDYYGG--------------------------------------------------------- 324 (671)
T ss_dssp CCCCBTTTSTTCEEEEEEEEETT---------------------------------------------------------
T ss_pred CCccCcccCCCeEEEEEEcCCCC---------------------------------------------------------
Confidence 53 889999999998643210
Q ss_pred ccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhh
Q 041951 353 VKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQ 432 (726)
Q Consensus 353 ~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (726)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCC-----cCcCCC
Q 041951 433 KIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQAS-----IDSEDK 507 (726)
Q Consensus 433 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~-----~~~~~~ 507 (726)
...++.||++||.. ||+|||++|+++++...... ......
T Consensus 325 ---------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~ 369 (671)
T 1r6v_A 325 ---------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPAT 369 (671)
T ss_dssp ---------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCS
T ss_pred ---------------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCcccccccccccccc
Confidence 01368999999976 99999999999987532100 000011
Q ss_pred CCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCCccccCCCCceecCC
Q 041951 508 RKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETF 587 (726)
Q Consensus 508 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~ 587 (726)
..+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+. +..||||+||+.+|++..|..+..
T Consensus 370 ~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~---d~~~G~G~vna~~Al~~~l~~~~~ 446 (671)
T 1r6v_A 370 NGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW---DHDTGYGLVKLDAALQGPLPTQGG 446 (671)
T ss_dssp SSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC---BTTTBTCBCCHHHHHHCCCCSSSE
T ss_pred CCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCCC---CCCcccceeCHHHHhhhhcCCCCC
Confidence 12579999999999999999999999999999999999999999999876543 578999999999999987766544
Q ss_pred hhh
Q 041951 588 KQD 590 (726)
Q Consensus 588 ~~~ 590 (726)
..+
T Consensus 447 ~~~ 449 (671)
T 1r6v_A 447 VEE 449 (671)
T ss_dssp EEE
T ss_pred ccc
Confidence 333
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-52 Score=435.11 Aligned_cols=259 Identities=32% Similarity=0.488 Sum_probs=219.7
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~g 167 (726)
++++ .+|..+++|+||+|||||||||++||+|+. ...+.|..++..+..|..+
T Consensus 11 i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~~--------------------------~~g~~~~~~~~~~~~d~~g 63 (281)
T 1to2_E 11 IKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKV--------------------------AGGASMVPSETNPFQDNNS 63 (281)
T ss_dssp TTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCE--------------------------EEEEECCTTCCCTTCCSSS
T ss_pred cChH-HHHhcCCCCCCCEEEEEcCCCCCCCHHHcC--------------------------cCCccccCCCCCCCCCCCC
Confidence 4455 899999999999999999999999999962 2333442222223468899
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDF 246 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~ 246 (726)
|||||||||+|.. +..|+ .||||+|+|+.+|+++..+ +..+++++||+||++++++|||||||...
T Consensus 64 HGT~vAgiia~~~----~~~g~-----~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~---- 130 (281)
T 1to2_E 64 HGTHVAGTVAALN----NSIGV-----LGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS---- 130 (281)
T ss_dssp HHHHHHHHHHCCS----SSSSB-----CCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC----
T ss_pred cHHHHHHHHhccC----CCCcc-----eeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC----
Confidence 9999999999873 22333 8999999999999998776 67889999999999999999999999883
Q ss_pred cccHHHHHHHHhhhCCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCC
Q 041951 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKG 320 (726)
Q Consensus 247 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 320 (726)
....+..++.++.++|++||+||||+|.... |+..|++|+|||++.+
T Consensus 131 ~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 183 (281)
T 1to2_E 131 GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--------------------------- 183 (281)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---------------------------
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC---------------------------
Confidence 2457788888899999999999999997631 8888999999985321
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeeh
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQ 400 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~ 400 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCcc
Q 041951 401 DSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILK 480 (726)
Q Consensus 401 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 480 (726)
+.++.||++||.+
T Consensus 184 ------------------------------------------------------------~~~~~fS~~G~~~------- 196 (281)
T 1to2_E 184 ------------------------------------------------------------NQRASFSSVGPEL------- 196 (281)
T ss_dssp ------------------------------------------------------------SCBCTTCCCSTTC-------
T ss_pred ------------------------------------------------------------CCcCCcCCCCCCc-------
Confidence 3468899999965
Q ss_pred CceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCC
Q 041951 481 PDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKN 560 (726)
Q Consensus 481 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~ 560 (726)
||+|||++|+++.+. +.|..++|||||||+|||++|||+|++|+|++.+||++|++||+++.
T Consensus 197 -di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g---- 258 (281)
T 1to2_E 197 -DVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG---- 258 (281)
T ss_dssp -CEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS----
T ss_pred -eEEecCCCeEeecCC-------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC----
Confidence 999999999999875 67999999999999999999999999999999999999999999985
Q ss_pred CCCCcccCCCCCCccccCCC
Q 041951 561 TEAEFAYGSGHVNPVKAINP 580 (726)
Q Consensus 561 ~~~~~~~G~G~in~~~Al~~ 580 (726)
.+..||||+||+.+|+++
T Consensus 259 --~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 --DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp --CHHHHTTCBCCHHHHTSS
T ss_pred --CCCCcccceecHHHHhhh
Confidence 267899999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-52 Score=434.01 Aligned_cols=257 Identities=30% Similarity=0.485 Sum_probs=218.4
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~g 167 (726)
++++ .+|..+++|+||+|||||||||++||+|+ +...++|..+ .....|..|
T Consensus 11 i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~--------------------------~~~g~~~~~~-~~~~~d~~g 62 (274)
T 1r0r_E 11 IKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLN--------------------------VVGGASFVAG-EAYNTDGNG 62 (274)
T ss_dssp TTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCC--------------------------EEEEEECSTT-CCTTCCSSS
T ss_pred cCCH-HHHhcCCCCCCCEEEEEcCCCCCCCHhHc--------------------------CCCCccccCC-CCCCCCCCC
Confidence 4555 89999999999999999999999999995 2233444222 123567899
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDF 246 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~ 246 (726)
|||||||||+|.. +..|+ .||||+|+|+.+|+++..+ +..+++++||+||++++++|||||||...
T Consensus 63 HGT~vAgiia~~~----~~~g~-----~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~---- 129 (274)
T 1r0r_E 63 HGTHVAGTVAALD----NTTGV-----LGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS---- 129 (274)
T ss_dssp HHHHHHHHHHCCS----SSSBC-----CCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS----
T ss_pred CHHHHHHHHHccC----CCCce-----EEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC----
Confidence 9999999999873 22333 8999999999999998776 67889999999999999999999999883
Q ss_pred cccHHHHHHHHhhhCCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCC
Q 041951 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKG 320 (726)
Q Consensus 247 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 320 (726)
....+..++.++.++|+++|+||||+|.... |+..|++|+||+++.+
T Consensus 130 ~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 182 (274)
T 1r0r_E 130 GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--------------------------- 182 (274)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---------------------------
T ss_pred CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC---------------------------
Confidence 2356778888899999999999999997631 7888999999985421
Q ss_pred ceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeeh
Q 041951 321 RRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQ 400 (726)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~ 400 (726)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCcc
Q 041951 401 DSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILK 480 (726)
Q Consensus 401 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 480 (726)
+.++.||++||.+
T Consensus 183 ------------------------------------------------------------~~~~~~S~~G~~~------- 195 (274)
T 1r0r_E 183 ------------------------------------------------------------SNRASFSSVGAEL------- 195 (274)
T ss_dssp ------------------------------------------------------------SCBCTTCCCSTTE-------
T ss_pred ------------------------------------------------------------CCcCccCCCCCCc-------
Confidence 3468899999854
Q ss_pred CceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCC
Q 041951 481 PDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKN 560 (726)
Q Consensus 481 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~ 560 (726)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++.
T Consensus 196 -di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g---- 257 (274)
T 1r0r_E 196 -EVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG---- 257 (274)
T ss_dssp -EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS----
T ss_pred -eEEeCCCCeEeecCC-------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC----
Confidence 999999999999875 67999999999999999999999999999999999999999999985
Q ss_pred CCCCcccCCCCCCccccCC
Q 041951 561 TEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 561 ~~~~~~~G~G~in~~~Al~ 579 (726)
.+..||+|+||+.+|++
T Consensus 258 --~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 --SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp --CHHHHTTCBCCHHHHTC
T ss_pred --CCCCcccCccCHHHHhC
Confidence 26789999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=429.71 Aligned_cols=256 Identities=31% Similarity=0.473 Sum_probs=218.5
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~g 167 (726)
++++ .+|..+++|+||+|||||||| .+||+|+ +...++|..+ ...+.|..|
T Consensus 11 i~~~-~a~~~g~~G~gv~VaViDtGi-~~h~~l~--------------------------~~~~~~~~~~-~~~~~d~~g 61 (269)
T 1gci_A 11 VQAP-AAHNRGLTGSGVKVAVLDTGI-STHPDLN--------------------------IRGGASFVPG-EPSTQDGNG 61 (269)
T ss_dssp TTHH-HHHHTTCSCTTCEEEEEESCC-CCCTTCC--------------------------EEEEEECSTT-CCSCSCSSS
T ss_pred cCcH-HHHhcCCCCCCCEEEEECCCC-CCCHhhc--------------------------ccCCcccCCC-CCCCCCCCC
Confidence 4455 899999999999999999999 8999995 2233444222 133578899
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDF 246 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~ 246 (726)
|||||||||+|.. +..|+ .||||+|+|+.+|+++..+ +..+++++||+||++++++|||||||....
T Consensus 62 HGT~vAgiia~~~----~~~~~-----~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~~--- 129 (269)
T 1gci_A 62 HGTHVAGTIAALN----NSIGV-----LGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP--- 129 (269)
T ss_dssp HHHHHHHHHHCCC----SSSBC-----CCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSC---
T ss_pred ChHHHHHHHhcCc----CCCCc-----EEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---
Confidence 9999999999873 22333 8999999999999998766 678899999999999999999999998732
Q ss_pred cccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceee
Q 041951 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFP 324 (726)
Q Consensus 247 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 324 (726)
...+..++.++.++|+++|+||||+|.... |+..+++|+||+++.+
T Consensus 130 -~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 177 (269)
T 1gci_A 130 -SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------------------------------- 177 (269)
T ss_dssp -CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------------------------------
T ss_pred -CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC-------------------------------
Confidence 356777888899999999999999998655 8899999999986421
Q ss_pred EEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHH
Q 041951 325 LVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLS 404 (726)
Q Consensus 325 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~ 404 (726)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceE
Q 041951 405 SLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDIS 484 (726)
Q Consensus 405 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 484 (726)
+.++.||++||.+ ||+
T Consensus 178 --------------------------------------------------------~~~~~~S~~G~~~--------di~ 193 (269)
T 1gci_A 178 --------------------------------------------------------NNRASFSQYGAGL--------DIV 193 (269)
T ss_dssp --------------------------------------------------------SCBCTTCCCSTTE--------EEE
T ss_pred --------------------------------------------------------CCCCCCCCCCCCc--------ceE
Confidence 3468899999965 999
Q ss_pred eCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCC
Q 041951 485 APGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAE 564 (726)
Q Consensus 485 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~ 564 (726)
|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. .+
T Consensus 194 APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g------~~ 254 (269)
T 1gci_A 194 APGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG------ST 254 (269)
T ss_dssp EECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS------CH
T ss_pred ecCCCeEeecCC-------------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC------CC
Confidence 999999999875 67999999999999999999999999999999999999999999985 26
Q ss_pred cccCCCCCCccccCC
Q 041951 565 FAYGSGHVNPVKAIN 579 (726)
Q Consensus 565 ~~~G~G~in~~~Al~ 579 (726)
..||+|+||+.+|++
T Consensus 255 ~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 255 NLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHTTCBCCHHHHTC
T ss_pred CCcccCccCHHHHcC
Confidence 789999999999985
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-51 Score=430.48 Aligned_cols=259 Identities=27% Similarity=0.351 Sum_probs=215.4
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~g 167 (726)
++++ .+|+.+..|+||+|||||||||++||+|.+. ++..++|.++ ..++.|..+
T Consensus 18 i~~~-~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~------------------------~~~~~~~~~~-~~~~~d~~g 71 (280)
T 1dbi_A 18 TYTD-YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK------------------------VIKGYDFVDN-DYDPMDLNN 71 (280)
T ss_dssp GTHH-HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT------------------------EEEEEETTTT-BSCCCCSSS
T ss_pred cCcH-HHHhhcCCCCCCEEEEEeCCcCCCChhhccC------------------------cccceeccCC-CCCCCCCCC
Confidence 4445 8999998888999999999999999999843 4455666332 134678899
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDF 246 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~ 246 (726)
|||||||||+|... +..|+ .||||+|+|+.+|+++..+ +..+++++||+||+++|++|||||||...
T Consensus 72 HGT~vAgiia~~~~---~~~g~-----~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~---- 139 (280)
T 1dbi_A 72 HGTHVAGIAAAETN---NATGI-----AGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC---- 139 (280)
T ss_dssp HHHHHHHHHHCCCS---SSSSC-----CCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC----
T ss_pred cHHHHHHHHhCcCC---CCCcc-----eEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----
Confidence 99999999998753 22333 8999999999999998776 77889999999999999999999999873
Q ss_pred cccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceee
Q 041951 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFP 324 (726)
Q Consensus 247 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 324 (726)
....+..++.++.++|+++|+||||+|.... |+..+++|+|||++.+
T Consensus 140 ~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 188 (280)
T 1dbi_A 140 HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY------------------------------- 188 (280)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-------------------------------
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC-------------------------------
Confidence 2356778888899999999999999997655 8899999999986422
Q ss_pred EEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHH
Q 041951 325 LVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLS 404 (726)
Q Consensus 325 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~ 404 (726)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceE
Q 041951 405 SLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDIS 484 (726)
Q Consensus 405 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 484 (726)
+.++.||++||.+ ||+
T Consensus 189 --------------------------------------------------------~~~~~~S~~G~~~--------dv~ 204 (280)
T 1dbi_A 189 --------------------------------------------------------DRLASFSNYGTWV--------DVV 204 (280)
T ss_dssp --------------------------------------------------------SCBCTTBCCSTTC--------CEE
T ss_pred --------------------------------------------------------CCcCCCCCCCCCc--------eEE
Confidence 3468899999865 999
Q ss_pred eCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCC
Q 041951 485 APGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAE 564 (726)
Q Consensus 485 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~ 564 (726)
|||++|+++.+. +.|..++|||||||||||++|||++ |++++.+||++|++||+++... .
T Consensus 205 ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~-----~ 264 (280)
T 1dbi_A 205 APGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT-----G 264 (280)
T ss_dssp EECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB-----T
T ss_pred EecCCeEeecCC-------------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC-----C
Confidence 999999999875 6799999999999999999999987 8999999999999999998754 4
Q ss_pred cccCCCCCCccccCC
Q 041951 565 FAYGSGHVNPVKAIN 579 (726)
Q Consensus 565 ~~~G~G~in~~~Al~ 579 (726)
..||+|+||+.+|++
T Consensus 265 ~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 265 TYFKYGRINSYNAVT 279 (280)
T ss_dssp TTBSSEECCHHHHHT
T ss_pred CcccCCEECHHHHhc
Confidence 679999999999986
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-53 Score=459.45 Aligned_cols=297 Identities=20% Similarity=0.193 Sum_probs=200.4
Q ss_pred ccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCccc--CCce-----eEeeeecC----
Q 041951 87 FMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFT--CNNK-----IIGARYYT---- 155 (726)
Q Consensus 87 ~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~--~n~k-----~ig~~~~~---- 155 (726)
..|++ ++|+++..|++|+|||||||||++||+|++....+....|...++...... .+.. ..+.....
T Consensus 17 ipG~~-~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (357)
T 4h6x_A 17 IPGLA-DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEA 95 (357)
T ss_dssp STTHH-HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred ccCHH-HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCcccccccccccccc
Confidence 34677 999999999999999999999999999997766666667765544321110 0000 00000000
Q ss_pred -CCCCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC------CChHHHHHHHHHHhh
Q 041951 156 -PAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG------CDSAGVLGAFDDAIA 228 (726)
Q Consensus 156 -~~~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g------~~~~~i~~ai~~A~~ 228 (726)
..+..++.|.+||||||||||+|+... | +.||||+|+|+.+|++.... ....++++||+||++
T Consensus 96 ~~~~~~~~~D~~gHGThVAGiiag~~~~-----g-----~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~ 165 (357)
T 4h6x_A 96 VIPDTKDRIVLNDHACHVTSTIVGQEHS-----P-----VFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALE 165 (357)
T ss_dssp HCTTTHHHHHHHHHHHHHHHHHHCCTTS-----S-----CCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHH
T ss_pred ccCCCCCCcCCCCcHHHHHHHHhccCCC-----C-----ceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHH
Confidence 001233456789999999999987421 2 38999999999999975421 345678999999999
Q ss_pred CCCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCe
Q 041951 229 DGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGK 306 (726)
Q Consensus 229 ~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~ 306 (726)
.|++|||||||.........+.+..++.++.++|+++|+||||+|.... |+..|++|+|||++.+
T Consensus 166 ~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------- 232 (357)
T 4h6x_A 166 LGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD------------- 232 (357)
T ss_dssp TTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT-------------
T ss_pred cCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC-------------
Confidence 9999999999987545556678888889999999999999999997665 8899999999986432
Q ss_pred eEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCc
Q 041951 307 AISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDK 386 (726)
Q Consensus 307 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~ 386 (726)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecc
Q 041951 387 VSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGF 466 (726)
Q Consensus 387 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~f 466 (726)
+.++.|
T Consensus 233 --------------------------------------------------------------------------~~~~~f 238 (357)
T 4h6x_A 233 --------------------------------------------------------------------------GTPCHF 238 (357)
T ss_dssp --------------------------------------------------------------------------SSBCTT
T ss_pred --------------------------------------------------------------------------Cccccc
Confidence 356899
Q ss_pred cCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----cCCCCCHH
Q 041951 467 SSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----FHPDWSPS 542 (726)
Q Consensus 467 SS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~ 542 (726)
|+||+.. .||||+|||++|+++.+.. +.|..++|||||||||||++|||++ ++|.|+++
T Consensus 239 Sn~G~~~-----~~~di~APG~~i~s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~ 301 (357)
T 4h6x_A 239 SNWGGNN-----TKEGILAPGEEILGAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAE 301 (357)
T ss_dssp CC---CT-----TTTEEEEECSSEEECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred ccCCCCC-----CccceeecCCCeEeccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHH
Confidence 9999753 4899999999999988763 5678899999999999999999995 45789999
Q ss_pred HHHHHHHccccccCCCCCCCCCcccCCCCCCccccCC
Q 041951 543 AIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 543 ~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 579 (726)
|||++|++||++++..... .+..||+|+||+.+|++
T Consensus 302 ~v~~~L~~tA~~~~~~~~~-~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 302 AVRTALLKTAIPCDPEVVE-EPERCLRGFVNIPGAMK 337 (357)
T ss_dssp HHHHHHHHC---------------CTTCBCCHHHHHH
T ss_pred HHHHHHHhhCccCCCCCCC-CcccceeEEecHHHHHH
Confidence 9999999999998654322 25789999999999987
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-51 Score=438.05 Aligned_cols=261 Identities=26% Similarity=0.370 Sum_probs=216.6
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC---CCCCCCC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA---PYDTARD 164 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~---~~~~~~D 164 (726)
++++ .+|..+++|+||+|||||||||++||+|.+. ++..++|..+ +.....|
T Consensus 28 i~~~-~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~------------------------~~~~~~~~~~~~~~~~~~~d 82 (327)
T 2x8j_A 28 VEAP-AVWRASAKGAGQIIGVIDTGCQVDHPDLAER------------------------IIGGVNLTTDYGGDETNFSD 82 (327)
T ss_dssp TTHH-HHHHHHGGGTTCEEEEEESCCCTTCTTTGGG------------------------EEEEEECSSGGGGCTTCCCC
T ss_pred cChH-HHHhcCCCCCCCEEEEEcCCCCCCChhHhhc------------------------ccCCccccCCCCCCCCCCCC
Confidence 5555 8999999999999999999999999999842 4455555322 2234578
Q ss_pred CcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhh------CCCcEEEEc
Q 041951 165 EEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIA------DGVDVITIS 237 (726)
Q Consensus 165 ~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~------~g~dVInlS 237 (726)
..||||||||||+|.. +..|+ .||||+|+|+.+|+++..+ +..+++++||+||++ .+++|||||
T Consensus 83 ~~gHGT~VAgiia~~~----~~~g~-----~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~S 153 (327)
T 2x8j_A 83 NNGHGTHVAGTVAAAE----TGSGV-----VGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMS 153 (327)
T ss_dssp SSSHHHHHHHHHHCCC----CSSBC-----CCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEEC
T ss_pred CCCchHHHHHHHhccC----CCCCc-----EeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEEEC
Confidence 9999999999999873 22233 8999999999999998776 778899999999999 899999999
Q ss_pred ccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCC------C-CCCCCceEEEecccCCceeeeEEEeCCCeeEee
Q 041951 238 IGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL------T-ASVAPWLMSVAASTTDRLFVDKVALGNGKAISG 310 (726)
Q Consensus 238 lG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~------~-~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g 310 (726)
||... ....+..++..+.++|++||+||||+|... . |+.+|++|+|||++.+
T Consensus 154 ~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~----------------- 212 (327)
T 2x8j_A 154 LGGPT----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD----------------- 212 (327)
T ss_dssp EEBSC----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT-----------------
T ss_pred CCcCC----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC-----------------
Confidence 99873 235677788888999999999999999752 1 8888999999986422
Q ss_pred EEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCcccee
Q 041951 311 YSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFV 390 (726)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~ 390 (726)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCC
Q 041951 391 VSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRG 470 (726)
Q Consensus 391 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~G 470 (726)
+.++.||++|
T Consensus 213 ----------------------------------------------------------------------~~~~~fS~~G 222 (327)
T 2x8j_A 213 ----------------------------------------------------------------------LRLSDFTNTN 222 (327)
T ss_dssp ----------------------------------------------------------------------CCBSCC---C
T ss_pred ----------------------------------------------------------------------CCCCCccCCC
Confidence 3468899999
Q ss_pred CCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhc-----CCCCCHHHHH
Q 041951 471 PNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSF-----HPDWSPSAIK 545 (726)
Q Consensus 471 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~P~ls~~~ik 545 (726)
|.+ ||+|||++|+++++. +.|..++|||||||+|||++|||+|+ +|.|++.+||
T Consensus 223 ~~~--------di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~ 281 (327)
T 2x8j_A 223 EEI--------DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIY 281 (327)
T ss_dssp CCC--------SEEEECSSEEEECST-------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CCc--------eEecCcCceEeecCC-------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHH
Confidence 854 999999999999875 57999999999999999999999999 9999999999
Q ss_pred HHHHccccccCCCCCCCCCcccCCCCCCccccCC
Q 041951 546 SAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 546 ~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 579 (726)
++|++||++++.. +..+|+|+||+.+|++
T Consensus 282 ~~L~~tA~~~g~~-----~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 282 AQLVRRATPIGFT-----AQAEGNGFLTLDLVER 310 (327)
T ss_dssp HHHHTTEECCSSC-----HHHHTTCEECTTHHHH
T ss_pred HHHHHhCccCCCC-----CCceeeeEECHHHHHH
Confidence 9999999998642 6789999999999987
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=423.78 Aligned_cols=258 Identities=26% Similarity=0.399 Sum_probs=219.1
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~g 167 (726)
++++ .+|+.. +|+||+|||||||||++||+|.+. ++..++|.++ ...+.|..+
T Consensus 18 i~~~-~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~~~-~~~~~d~~g 70 (279)
T 1thm_A 18 IQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK------------------------VVGGWDFVDN-DSTPQNGNG 70 (279)
T ss_dssp TTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEETTTT-BSCCCCSSS
T ss_pred CChH-HHHhcC-CCCCCEEEEEccCCCCCCcchhcC------------------------ccccccccCC-CCCCCCCCC
Confidence 4455 899887 799999999999999999999843 4555566332 134578899
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDF 246 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~ 246 (726)
|||||||||+|... +..|+ .||||+|+|+.+|+++..+ ++..++++||+||+++|++|||||||...
T Consensus 71 HGT~vAgiia~~~~---n~~g~-----~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~---- 138 (279)
T 1thm_A 71 HGTHCAGIAAAVTN---NSTGI-----AGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV---- 138 (279)
T ss_dssp HHHHHHHHHHCCCS---SSSSC-----CCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS----
T ss_pred cHHHHHHHHhCccC---CCCcc-----EEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC----
Confidence 99999999999753 22343 8999999999999998776 77888999999999999999999999873
Q ss_pred cccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceee
Q 041951 247 SEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFP 324 (726)
Q Consensus 247 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 324 (726)
....+..++.++.++|+++|+||||+|.... |+..+++|+|||++.+
T Consensus 139 ~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 187 (279)
T 1thm_A 139 GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------------------------- 187 (279)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-------------------------------
T ss_pred CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC-------------------------------
Confidence 2356778888899999999999999997655 8889999999986422
Q ss_pred EEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHH
Q 041951 325 LVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLS 404 (726)
Q Consensus 325 l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~ 404 (726)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceE
Q 041951 405 SLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDIS 484 (726)
Q Consensus 405 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 484 (726)
+.++.||++||.+ ||+
T Consensus 188 --------------------------------------------------------~~~~~fS~~G~~~--------dv~ 203 (279)
T 1thm_A 188 --------------------------------------------------------DNKSSFSTYGSWV--------DVA 203 (279)
T ss_dssp --------------------------------------------------------SCBCTTCCCCTTC--------CEE
T ss_pred --------------------------------------------------------CCcCCcCCCCCce--------EEE
Confidence 3468899999865 999
Q ss_pred eCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCC
Q 041951 485 APGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAE 564 (726)
Q Consensus 485 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~ 564 (726)
|||++|+++++. +.|..++|||||||||||++||| ++|.+++.+||++|++||+++... .
T Consensus 204 APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-----~ 263 (279)
T 1thm_A 204 APGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-----G 263 (279)
T ss_dssp EECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-----T
T ss_pred EcCCCeEEEeCC-------------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-----C
Confidence 999999999875 57999999999999999999999 479999999999999999998765 3
Q ss_pred cccCCCCCCccccCC
Q 041951 565 FAYGSGHVNPVKAIN 579 (726)
Q Consensus 565 ~~~G~G~in~~~Al~ 579 (726)
..||+|+||+.+|++
T Consensus 264 ~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 264 TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TTBSSEECCHHHHHH
T ss_pred ccccCCeeCHHHHhc
Confidence 579999999999975
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-51 Score=429.43 Aligned_cols=263 Identities=21% Similarity=0.242 Sum_probs=211.0
Q ss_pred CCCC-CCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhc
Q 041951 98 RSVE-SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTA 176 (726)
Q Consensus 98 ~~~G-~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGia 176 (726)
.++| +||+|||||||||++||+|.+. .+.+...+..+......|.+||||||||||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~-----------------------~~~~~~~~~~~~~~~d~~~~gHGT~VAGii 59 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA-----------------------DLTVLPTLAPTAARSDGFMSAHGTHVASII 59 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC-----------------------EEEECCCSSCCCCCTTCHHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC-----------------------eeecCcCCCCCCCCCCCCCCCcccceeehh
Confidence 4578 6999999999999999999853 112222222222233445679999999999
Q ss_pred cccCCCCCccccccccceeeecCCcEEEEEEeeCCCC--CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHH
Q 041951 177 SGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG--CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIG 254 (726)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a 254 (726)
+|+... | +.||||+|+|+.+|++.+.+ ....++++||+||++.+++|||||||...........+..+
T Consensus 60 ag~~~~-----~-----~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~a 129 (282)
T 3zxy_A 60 FGQPET-----S-----VPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENA 129 (282)
T ss_dssp HCCTTS-----S-----SCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHHHH
T ss_pred hccCCc-----e-----eeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHHHHH
Confidence 987421 2 38999999999999986543 67778999999999999999999999764334455677888
Q ss_pred HHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCc
Q 041951 255 AFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEIS 332 (726)
Q Consensus 255 ~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~ 332 (726)
+..+.++|+++|+||||+|.... |+..|++|+|||++.+
T Consensus 130 i~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------------------------------- 170 (282)
T 3zxy_A 130 VSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH--------------------------------------- 170 (282)
T ss_dssp HHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT---------------------------------------
T ss_pred HHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC---------------------------------------
Confidence 88899999999999999998766 8999999999986422
Q ss_pred ccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhc
Q 041951 333 ESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKES 412 (726)
Q Consensus 333 ~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 412 (726)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEe
Q 041951 413 TKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILA 492 (726)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 492 (726)
+.++.||++|+. ..||||+|||.+|++
T Consensus 171 ------------------------------------------------~~~~~~S~~~~~-----~~~~di~ApG~~i~s 197 (282)
T 3zxy_A 171 ------------------------------------------------GHPLDFSNWGST-----YEQQGILAPGEDILG 197 (282)
T ss_dssp ------------------------------------------------SCBCSSSCCCHH-----HHHHEEEEECSSEEE
T ss_pred ------------------------------------------------CccccccCCCCC-----ccccceeccCcceee
Confidence 346788999864 368999999999999
Q ss_pred ecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcC----CCCCHHHHHHHHHccccccCCCCCCCCCcccC
Q 041951 493 AFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH----PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYG 568 (726)
Q Consensus 493 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G 568 (726)
+.+. +.|..++|||||||||||++|||++++ |.+++++||++|++||++++.... .....+|
T Consensus 198 ~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~~~-~~~~~~G 263 (282)
T 3zxy_A 198 AKPG-------------GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDAP-EQARRCL 263 (282)
T ss_dssp ECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC--------CGGGT
T ss_pred ecCC-------------CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCCCC-CccCcee
Confidence 9876 679999999999999999999999875 789999999999999998765322 1356899
Q ss_pred CCCCCccccCC
Q 041951 569 SGHVNPVKAIN 579 (726)
Q Consensus 569 ~G~in~~~Al~ 579 (726)
+|+||+.+|++
T Consensus 264 ~G~ln~~~A~~ 274 (282)
T 3zxy_A 264 AGRLNVSGAFT 274 (282)
T ss_dssp TCBCCHHHHHH
T ss_pred eeEeCHHHHHH
Confidence 99999999986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-51 Score=434.40 Aligned_cols=274 Identities=23% Similarity=0.276 Sum_probs=221.1
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
+..|++ ++|+....++||+|||||||||++||+|.+. .+.+..++..++.....|.
T Consensus 6 ~i~G~~-~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~-----------------------~~~~~~~~~~~~~~~~~d~ 61 (306)
T 4h6w_A 6 NIPGLK-KLWSETRGDPKICVAVLDGIVDQNHPCFIGA-----------------------DLTRLPSLVSGEANANGSM 61 (306)
T ss_dssp -CTTHH-HHHHHCSCCTTCEEEEESSCCCTTSGGGTTC-----------------------EEEECC----------CCC
T ss_pred CCcCHH-HHHhhhCCCCCCEEEEEcCCCCCCChhHcCC-----------------------cccCCCcccCCCCCCCCCC
Confidence 345777 9999987789999999999999999999853 2223333322222344577
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC--CChHHHHHHHHHHhhCCCcEEEEcccCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG--CDSAGVLGAFDDAIADGVDVITISIGGDSA 243 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~A~~~g~dVInlSlG~~~~ 243 (726)
.||||||||||+|+.. +.+.||||+|+|+.+|++.+.+ .....+++||+||++++++|||+|||....
T Consensus 62 ~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~ 131 (306)
T 4h6w_A 62 STHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTD 131 (306)
T ss_dssp CHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEES
T ss_pred CCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeecccccccc
Confidence 8999999999998742 1238999999999999986643 677789999999999999999999997644
Q ss_pred CCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCc
Q 041951 244 VDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGR 321 (726)
Q Consensus 244 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 321 (726)
.......+..++..+.++|+++|+||||+|.... |+..+++|+|||++..
T Consensus 132 ~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 183 (306)
T 4h6w_A 132 AGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ---------------------------- 183 (306)
T ss_dssp SSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT----------------------------
T ss_pred CCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC----------------------------
Confidence 4455667888888999999999999999997766 8899999999986432
Q ss_pred eeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehh
Q 041951 322 RFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQD 401 (726)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~ 401 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccC
Q 041951 402 SLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKP 481 (726)
Q Consensus 402 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 481 (726)
+.++.||++|+. ..||
T Consensus 184 -----------------------------------------------------------~~~~~~s~~g~~-----~~~~ 199 (306)
T 4h6w_A 184 -----------------------------------------------------------GKPVDFSNWGDA-----YQKQ 199 (306)
T ss_dssp -----------------------------------------------------------SCBCSSSCBCHH-----HHHH
T ss_pred -----------------------------------------------------------CCccccccccCC-----cCcc
Confidence 345778888864 3589
Q ss_pred ceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhc----CCCCCHHHHHHHHHccccccCC
Q 041951 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSF----HPDWSPSAIKSAIMTTAWAMNS 557 (726)
Q Consensus 482 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~ls~~~ik~~L~~TA~~~~~ 557 (726)
||+|||++|+++.+. +.|..++|||||||||||++|||++. +|.|+|++||++|++||+++..
T Consensus 200 di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~ 266 (306)
T 4h6w_A 200 GILAPGKDILGAKPN-------------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNP 266 (306)
T ss_dssp EEEEECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCT
T ss_pred eeecCCcCcccccCC-------------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCC
Confidence 999999999999876 67999999999999999999999864 6999999999999999999876
Q ss_pred CCCCCCCcccCCCCCCccccCC
Q 041951 558 SKNTEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 558 ~~~~~~~~~~G~G~in~~~Al~ 579 (726)
.+.. ....||+|+||+.+|++
T Consensus 267 ~~~~-~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 267 KDTD-DQSRCLMGKLNILDAIE 287 (306)
T ss_dssp TTCS-CGGGGTTCBCCHHHHHH
T ss_pred CCCC-CCCCcceeecCHHHHHH
Confidence 6442 24579999999999987
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=424.37 Aligned_cols=276 Identities=28% Similarity=0.378 Sum_probs=222.2
Q ss_pred ccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC---CCCCCC
Q 041951 87 FMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA---PYDTAR 163 (726)
Q Consensus 87 ~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~---~~~~~~ 163 (726)
.++++ ++|..+++|+||+|||||||||++||+|.+. +...++|.++ ......
T Consensus 12 ~i~~~-~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~------------------------~~~~~~~~~~~~~~~~~~~ 66 (310)
T 2ixt_A 12 AIYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN------------------------VEQCKDFTGATTPINNSCT 66 (310)
T ss_dssp HHHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEESSSSSSCEETCCC
T ss_pred hcCch-hhhhccCCCCCcEEEEEecCCCCCCHHHhhc------------------------ccccccccCCCCCCCCCCC
Confidence 35556 8999999999999999999999999999853 3344455322 123456
Q ss_pred CCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCC-----cEEEEc
Q 041951 164 DEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGV-----DVITIS 237 (726)
Q Consensus 164 D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~-----dVInlS 237 (726)
|..||||||||||+|.... +..|+ .||||+|+|+.+|++++.+ +..+++++||+||+++++ +|||||
T Consensus 67 d~~gHGT~vAgiia~~~~~--n~~g~-----~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S 139 (310)
T 2ixt_A 67 DRNGHGTHVAGTALADGGS--DQAGI-----YGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMS 139 (310)
T ss_dssp CSSSHHHHHHHHHHCBCCT--TSCSC-----BCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCHHHHHHHHhccCCC--CCCce-----EEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEc
Confidence 8899999999999987421 22233 8999999999999998776 678899999999999887 999999
Q ss_pred ccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEe
Q 041951 238 IGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSI 313 (726)
Q Consensus 238 lG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (726)
||... ....+..++.++.++|++||+||||+|.... |+..|++|+|||++...
T Consensus 140 ~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~------------------- 196 (310)
T 2ixt_A 140 LGSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ------------------- 196 (310)
T ss_dssp CCBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE-------------------
T ss_pred CCCCC----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc-------------------
Confidence 99883 2456777888889999999999999997632 88899999999864210
Q ss_pred ccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeec
Q 041951 314 NSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSL 393 (726)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~ 393 (726)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCC--eeecccCCCC
Q 041951 394 PAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAP--VVVGFSSRGP 471 (726)
Q Consensus 394 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~a~fSS~Gp 471 (726)
..+ .++.||++||
T Consensus 197 -----------------------------------------------------------------~~g~~~~~~~S~~G~ 211 (310)
T 2ixt_A 197 -----------------------------------------------------------------QNGTYRVADYSSRGY 211 (310)
T ss_dssp -----------------------------------------------------------------ETTEEEECTTSCCCC
T ss_pred -----------------------------------------------------------------cCCCeeeccccCCCC
Confidence 001 4688999998
Q ss_pred CCCC----CCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 041951 472 NAIV----PEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSA 547 (726)
Q Consensus 472 ~~~~----~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~ 547 (726)
.... ..+.||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++
T Consensus 212 ~~~~g~~~~~~~~~di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~ 278 (310)
T 2ixt_A 212 ISTAGDYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSN 278 (310)
T ss_dssp TTTTTSSSCCTTCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred ccCCccccccCCCeeEECCCCCEeeecCC-------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 5311 123599999999999998865 67999999999999999999999999999999999999
Q ss_pred HHccccccCCCC----CCCCCcccCCCCCCcc
Q 041951 548 IMTTAWAMNSSK----NTEAEFAYGSGHVNPV 575 (726)
Q Consensus 548 L~~TA~~~~~~~----~~~~~~~~G~G~in~~ 575 (726)
|++||++++..+ .+..+..+|||++|+.
T Consensus 279 L~~tA~~~~~~~~~~a~~g~d~~~G~G~~~vq 310 (310)
T 2ixt_A 279 LQERAKSVDIKGGYGAAIGDDYASGFGFARVQ 310 (310)
T ss_dssp HHHHHHTSCCCBSTTCCSSSBTTTBTCBCCC-
T ss_pred HHhhCcccCCCCCcccccCCccccccceeecC
Confidence 999999987532 1114679999999863
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=432.51 Aligned_cols=262 Identities=25% Similarity=0.388 Sum_probs=219.2
Q ss_pred ccCCCccccccCCCCC--CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCC----CC
Q 041951 87 FMGLNLSITRKRSVES--NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAP----YD 160 (726)
Q Consensus 87 ~~g~~~~~~~~~~~G~--GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~----~~ 160 (726)
.++++ ++|+.+ +|+ ||+|||||||||++||+|.++ +...++|..++ ..
T Consensus 14 ~i~~~-~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~------------------------~~~~~~~~~~~~~~~~~ 67 (320)
T 2z30_A 14 RVKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN------------------------IAWCVSTLRGKVSTKLR 67 (320)
T ss_dssp HTTCG-GGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG------------------------EEEEEECGGGCCBCCHH
T ss_pred hcChH-HHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc------------------------cccCccccCCccCCCCC
Confidence 35666 899988 999 999999999999999999842 33344442211 11
Q ss_pred CCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhC----------
Q 041951 161 TARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIAD---------- 229 (726)
Q Consensus 161 ~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~---------- 229 (726)
+..|..||||||||||+|.. +..|+ .||||+|+|+.+|+++..+ +..+++++||+||++.
T Consensus 68 ~~~d~~gHGT~vAgiia~~~----n~~g~-----~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~ 138 (320)
T 2z30_A 68 DCADQNGHGTHVIGTIAALN----NDIGV-----VGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGD 138 (320)
T ss_dssp HHBCSSSHHHHHHHHHHCCS----SSBSC-----CCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTSS
T ss_pred CCCCCCCCHHHHHHHHHccc----CCCce-----EeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCcccccccccc
Confidence 23678999999999999872 22333 8999999999999998776 6788999999999987
Q ss_pred ----------CCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceee
Q 041951 230 ----------GVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFV 297 (726)
Q Consensus 230 ----------g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~ 297 (726)
+++|||||||... ....+..++.++.++|++||+||||+|.... |+..|++|+|||++.+
T Consensus 139 ~~~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---- 210 (320)
T 2z30_A 139 GIIAGDPDDDAAEVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN---- 210 (320)
T ss_dssp SCCTTCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT----
T ss_pred cccccccccCCceEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCCC----
Confidence 9999999999883 2456777778889999999999999997654 8999999999986422
Q ss_pred eEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEE
Q 041951 298 DKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGT 377 (726)
Q Consensus 298 ~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~ 377 (726)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecC
Q 041951 378 VLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKD 457 (726)
Q Consensus 378 i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 457 (726)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcC-
Q 041951 458 FDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH- 536 (726)
Q Consensus 458 ~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~- 536 (726)
+.++.||++|| +|+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 211 ---~~~~~~S~~g~----------~v~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~ 264 (320)
T 2z30_A 211 ---DNIASFSNRQP----------EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYY 264 (320)
T ss_dssp ---SCBCTTSCSSC----------SEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcCcccCCCC----------CEEeCCCCeEEeccC-------------CCeEeccCHHHHHHHHHHHHHHHHHhch
Confidence 34688999997 789999999999875 679999999999999999999999998
Q ss_pred ------------CCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCCccccCCC
Q 041951 537 ------------PDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINP 580 (726)
Q Consensus 537 ------------P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~ 580 (726)
|+|++.+||++|++||+++...+. +..||||+||+.+|++.
T Consensus 265 ~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~g~---~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 265 QKYGKILPVGTFDDISKNTVRGILHITADDLGPTGW---DADYGYGVVRAALAVQA 317 (320)
T ss_dssp HHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSSSS---BTTTBTCBCCHHHHHHH
T ss_pred hhcccccccccCCCCCHHHHHHHHHhhCccCCCCCC---CCCcCCceeCHHHHHHH
Confidence 999999999999999999876542 57899999999999874
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=472.82 Aligned_cols=405 Identities=21% Similarity=0.253 Sum_probs=269.9
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeec-CCC-CCCCCCCCcCCcccchhhccccC
Q 041951 103 NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY-TPA-PYDTARDEEGHGSHTASTASGNE 180 (726)
Q Consensus 103 GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~-~~~-~~~~~~D~~gHGThVAGiaag~~ 180 (726)
+|+|||||||+|.+|++.... ..|+...+.+ .| .+.+-+..++ .++ ......|++||||||||||||..
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~~~dyg-~F--~D~v~~~~n~~Ddgd~~~~v~D~~GHGThVAGIIAa~~ 284 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSRTHETR-NV--DDFLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH 284 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTTTCCCC-EE--SSSCEEEEEEEGGGTEEEEEECCCHHHHHHHHHHCCCC
T ss_pred CEEEEEEeCCCCCCccccccc------cccccccccc-cc--ccccCCCCccCCCCCccccCCCCCCcHHHHHHHHhcCC
Confidence 699999999998766654210 0111000000 01 1222223333 111 11223578899999999999985
Q ss_pred CCCCccccccccceeeecCCcEEEEEEeeCCCC---CChHHHHHHHHHHhh-----CCCcEEEEcccCCCCCCCcccHHH
Q 041951 181 VKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG---CDSAGVLGAFDDAIA-----DGVDVITISIGGDSAVDFSEDAIS 252 (726)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~A~~-----~g~dVInlSlG~~~~~~~~~~~~~ 252 (726)
+..|+ .||||+|+|+.+|+++..+ .+...++.+|.+|++ .|++|||||||... .....+.+.
T Consensus 285 ----N~~g~-----~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~-~~~~~~~l~ 354 (1354)
T 3lxu_X 285 ----SSRDV-----DGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHA-NWSNSGRIG 354 (1354)
T ss_dssp ----SSSSS-----CCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCC-SCSSCCHHH
T ss_pred ----CCCCc-----eeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCC-CCCccHHHH
Confidence 22233 8999999999999987643 255678888888877 79999999999983 222345677
Q ss_pred HHHHHhh-hCCcEEEEccCCCCCCCC----CCC--CCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeE
Q 041951 253 IGAFHAM-AKGVLTLNSAGNSGPGLT----ASV--APWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPL 325 (726)
Q Consensus 253 ~a~~~a~-~~Gv~vV~AAGN~g~~~~----~~~--~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l 325 (726)
.++.++. ++|++||+||||+|.... |+. ++++|+|||++...........
T Consensus 355 ~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~----------------------- 411 (1354)
T 3lxu_X 355 ELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM----------------------- 411 (1354)
T ss_dssp HHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC---------------------------
T ss_pred HHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc-----------------------
Confidence 7777776 899999999999997643 664 8999999997643211000000
Q ss_pred EEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHH
Q 041951 326 VYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSS 405 (726)
Q Consensus 326 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~ 405 (726)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEe
Q 041951 406 LISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISA 485 (726)
Q Consensus 406 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A 485 (726)
.....+.++.|||+||+. ++++||||+|
T Consensus 412 --------------------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaA 439 (1354)
T 3lxu_X 412 --------------------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCA 439 (1354)
T ss_dssp --------------------------------------------------------CCCCCCCCSCCS--SSSCCEEEEE
T ss_pred --------------------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEe
Confidence 001125689999999998 8999999999
Q ss_pred CCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHh----cCCCCCHHHHHHHHHccccccCCCCCC
Q 041951 486 PGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKS----FHPDWSPSAIKSAIMTTAWAMNSSKNT 561 (726)
Q Consensus 486 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~ik~~L~~TA~~~~~~~~~ 561 (726)
||++|+++..... +.|..++|||||||||||++|||++ .+|+|++.+||++|++||++++..
T Consensus 440 PG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~--- 505 (1354)
T 3lxu_X 440 PGGAIASVPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV--- 505 (1354)
T ss_dssp EC--------------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTS---
T ss_pred cCceEEEeecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCCC---
Confidence 9999998755321 5789999999999999999999986 799999999999999999998764
Q ss_pred CCCcccCCCCCCccccCCCCceecCChhhHHHHHhhCCCC-CcceEEecCCCCccCCCCCCCCCCCCCCCcEEEeecCCC
Q 041951 562 EAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCNIGYD-ESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGK 640 (726)
Q Consensus 562 ~~~~~~G~G~in~~~Al~~~lv~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~ 640 (726)
.++.||+|+||+.+|++..+.++..+.+++.|+|..+.+ ...+.+.. . .|. . ..
T Consensus 506 -~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIylR~--~-~~~--------------~-------~~ 560 (1354)
T 3lxu_X 506 -DPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQ--G-VQR--------------N-------SI 560 (1354)
T ss_dssp -CTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEECS--S-CCC--------------S-------CE
T ss_pred -CcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEEec--c-ccC--------------C-------ce
Confidence 367899999999999999999999999999999998853 33332221 0 000 0 00
Q ss_pred ceEEEEEEEEEE---cCCC-CeeEE--EEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEc-
Q 041951 641 SFVVNFPRTVTN---VGVA-NSTYR--AKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWSD- 713 (726)
Q Consensus 641 ~~~~~~~rtv~n---~g~~-~~ty~--~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~- 713 (726)
...++++-++.| .... ...|. +.+.... --|+ -|..|.+ .++.++|.|+|++.. ...+.+++.|...|
T Consensus 561 ~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~~-L~~G~h~~~v~~~D~ 635 (1354)
T 3lxu_X 561 DYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPTG-LQPGVHSAVIRAYDT 635 (1354)
T ss_dssp EEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGGG-CCSEEEEEEEEEEES
T ss_pred EEEEEEeeeecCcccCChhhccceEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECCCC-CCCcceeEEEEEEEc
Confidence 012233333322 1111 12222 2222222 1333 3888888 677899999999987 45688999999875
Q ss_pred ----CCeeEEeEEEEE
Q 041951 714 ----GNHWVRSPIVVH 725 (726)
Q Consensus 714 ----~~~~v~~P~~v~ 725 (726)
.+..+|+||+|.
T Consensus 636 ~~~~~gp~f~ipvTv~ 651 (1354)
T 3lxu_X 636 DCVQKGSLFEIPVTVV 651 (1354)
T ss_dssp SCTTSCCSEEEEEEEE
T ss_pred CCcccCceEEeeEEEE
Confidence 368999999984
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-50 Score=432.32 Aligned_cols=268 Identities=23% Similarity=0.215 Sum_probs=220.1
Q ss_pred ccCCCccccccCCCCC--CcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCC----CC
Q 041951 87 FMGLNLSITRKRSVES--NLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAP----YD 160 (726)
Q Consensus 87 ~~g~~~~~~~~~~~G~--GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~----~~ 160 (726)
.++++ ++|+. .+|+ ||+||||||||| +||+|.+. ++..++|..+. ..
T Consensus 29 ~i~~~-~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~------------------------~~~~~~~~~~~~~~~~~ 81 (347)
T 2iy9_A 29 AIGLT-ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS------------------------EFAKFSFTQDGSPFPVK 81 (347)
T ss_dssp HHTCC-HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC------------------------EEEEEECBTTCCSSCCS
T ss_pred hCChH-HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC------------------------cccCCcccCCCCCCCCC
Confidence 35666 89988 8999 999999999999 99999843 34445553221 12
Q ss_pred CCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhC------CCcEE
Q 041951 161 TARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIAD------GVDVI 234 (726)
Q Consensus 161 ~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~------g~dVI 234 (726)
.+.|..||||||||||+|+ .|+ .||||+|+|+.+|++++.+.. ++++||+||+++ |++||
T Consensus 82 ~~~d~~gHGT~vAgiia~~-------~g~-----~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~~~~~~Vi 147 (347)
T 2iy9_A 82 KSEALYIHGTAMASLIASR-------YGI-----YGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLAPGEEKII 147 (347)
T ss_dssp SSHHHHHHHHHHHHHHHCS-------SSS-----CCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSCTTEEEEE
T ss_pred CCCCCCCcHHHHHHHHhcc-------cCC-----cccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcccCCceEE
Confidence 4567899999999999987 233 899999999999998775533 999999999999 99999
Q ss_pred EEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCC------C---CCCCC----------ceEEEecccC--C
Q 041951 235 TISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGL------T---ASVAP----------WLMSVAASTT--D 293 (726)
Q Consensus 235 nlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~------~---~~~~p----------~vitVga~~~--~ 293 (726)
|||||... .......+..++..+.++|++||+||||+|... . |+..+ ++|+|||++. +
T Consensus 148 n~S~G~~~-~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~ 226 (347)
T 2iy9_A 148 NISGGQKG-VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRK 226 (347)
T ss_dssp EESSCBCC-C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCT
T ss_pred EeccccCC-CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCC
Confidence 99999773 234566788888889999999999999999752 2 88888 9999998754 1
Q ss_pred ceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcC
Q 041951 294 RLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAG 373 (726)
Q Consensus 294 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G 373 (726)
...
T Consensus 227 g~~----------------------------------------------------------------------------- 229 (347)
T 2iy9_A 227 GET----------------------------------------------------------------------------- 229 (347)
T ss_dssp TSC-----------------------------------------------------------------------------
T ss_pred Cce-----------------------------------------------------------------------------
Confidence 100
Q ss_pred ceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecce
Q 041951 374 AAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTE 453 (726)
Q Consensus 374 ~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 453 (726)
T Consensus 230 -------------------------------------------------------------------------------- 229 (347)
T 2iy9_A 230 -------------------------------------------------------------------------------- 229 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHH
Q 041951 454 AVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVK 533 (726)
Q Consensus 454 ~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 533 (726)
......++.||++||+ ||||+|||++|+++.+. +.|..++|||||||||||++|||+
T Consensus 230 ---~~~~~~~~~fS~~G~~-------~~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~ 286 (347)
T 2iy9_A 230 ---PVLHGGGITGSRFGNN-------WVDIAAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMT 286 (347)
T ss_dssp ---CCBCCCSSSCBCBCTT-------TCSEEEECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHH
T ss_pred ---ecccCCCCCCCCCCCC-------CCEEEeCCCCeEeecCC-------------CCeEeccchHHHHHHHHHHHHHHH
Confidence 0001345799999994 67999999999999875 679999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCCccccCCC
Q 041951 534 SFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINP 580 (726)
Q Consensus 534 q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~ 580 (726)
|++|+|++.+||++|++||+++.... +..+|+|+||+.+|++.
T Consensus 287 ~~~p~lt~~~v~~~L~~tA~~~~~~~----~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 287 SCNPRATATELKRTLLESADKYPSLV----DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HHCTTSCHHHHHHHHHHHSEECGGGT----TTSGGGEECCHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHhCccCCCCC----CccccCCEecHHHHHHH
Confidence 99999999999999999999987653 46899999999999984
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=429.62 Aligned_cols=291 Identities=24% Similarity=0.333 Sum_probs=222.4
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCcccccccc-----CCCcccCCceeEeeeecC-----C-
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACN-----GGKNFTCNNKIIGARYYT-----P- 156 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~-----~g~~f~~n~k~ig~~~~~-----~- 156 (726)
++++ .+|+.+++|+||+||||||||+ +||+|.+.-.. .|+-... .+... ..+..-...++. +
T Consensus 19 i~~~-~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~ 91 (340)
T 3lpc_A 19 VKAD-KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGR-DADPFDEGDWFDNWACGGR 91 (340)
T ss_dssp CCHH-HHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSS-BSCCBCCCCCBCTTTTSCT
T ss_pred CCHH-HHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCc-cCCccccccccccccccCC
Confidence 5566 9999999999999999999998 99999853111 1110000 00000 000000000010 0
Q ss_pred -CCCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh-------
Q 041951 157 -APYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA------- 228 (726)
Q Consensus 157 -~~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~------- 228 (726)
++.....|..||||||||||+|... +..|+ .||||+|+|+.+|+++..++...++++||+||++
T Consensus 92 ~~~~~~~~d~~gHGT~vAgiia~~~~---~~~g~-----~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~ 163 (340)
T 3lpc_A 92 PDPRKERSDSSWHGSHVAGTIAAVTN---NRIGV-----AGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIP 163 (340)
T ss_dssp TCGGGSCBCCCCHHHHHHHHHHCCCS---SSSSC-----CCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSC
T ss_pred CCcccCCCCCCCCHHHHHHHHHccCC---CCCcc-----eeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccc
Confidence 1123356889999999999999753 22343 8999999999999998877888999999999997
Q ss_pred ---CCCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEe
Q 041951 229 ---DGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVAL 302 (726)
Q Consensus 229 ---~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~ 302 (726)
.+++|||||||... .....+..++.++.++|++||+||||+|.... |+..+++|+|||++.+
T Consensus 164 ~~~~~~~Vin~S~G~~~---~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------- 231 (340)
T 3lpc_A 164 ENRNPAKVINMSLGSDG---QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR--------- 231 (340)
T ss_dssp CCSSCCSEEEECCCEES---CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT---------
T ss_pred cccCCCeEEEeCcCCCC---CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC---------
Confidence 89999999999862 23455677778888999999999999998754 8889999999986422
Q ss_pred CCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEecc
Q 041951 303 GNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNN 382 (726)
Q Consensus 303 ~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~ 382 (726)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCe
Q 041951 383 EFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPV 462 (726)
Q Consensus 383 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 462 (726)
+.
T Consensus 232 ------------------------------------------------------------------------------~~ 233 (340)
T 3lpc_A 232 ------------------------------------------------------------------------------GI 233 (340)
T ss_dssp ------------------------------------------------------------------------------SS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 34
Q ss_pred eecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhc-C---CC
Q 041951 463 VVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSF-H---PD 538 (726)
Q Consensus 463 ~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---P~ 538 (726)
++.||++|| ||||+|||++|+++.+..... ...+.|..++|||||||||||++|||+|+ + |+
T Consensus 234 ~~~~S~~g~--------~~di~ApG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~ 299 (340)
T 3lpc_A 234 RASFSNYGV--------DVDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKN 299 (340)
T ss_dssp BCTTCCBST--------TCCEEEECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCCC--------CceEEecCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCC
Confidence 688999997 459999999999998753211 11246999999999999999999999998 5 99
Q ss_pred CCHHHHHHHHHccccccCCCCCCCCCcccCCCCCCccccCCCC
Q 041951 539 WSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPG 581 (726)
Q Consensus 539 ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~~ 581 (726)
|++.+||++|++||+++... .+..+|+|+||+.+||+..
T Consensus 300 lt~~~v~~~L~~tA~~~~~~----~~~~~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 300 LTPAELKDVLVSTTSPFNGR----LDRALGSGIVDAEAAVNSV 338 (340)
T ss_dssp CCHHHHHHHHHHTCBCCSSC----CSSCCCSSBCCHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCcCCCC----CCCCcccceecHHHHHHHH
Confidence 99999999999999998643 2668999999999998753
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=439.59 Aligned_cols=295 Identities=27% Similarity=0.313 Sum_probs=230.1
Q ss_pred ccccCCCccccc-cCCCCCCcEEEEEeccCCC------CCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC
Q 041951 85 WDFMGLNLSITR-KRSVESNLIVGVIDTGIWP------ESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA 157 (726)
Q Consensus 85 ~~~~g~~~~~~~-~~~~G~GVvVaVIDtGid~------~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~ 157 (726)
.+.++++ .+|+ .+++|+||+|||||||||+ .||+|.+. +...++|.++
T Consensus 5 ~~~i~~~-~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~------------------------i~~~~~~~~~ 59 (434)
T 1wmd_A 5 RGIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK------------------------ITALYALGRT 59 (434)
T ss_dssp HHHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC------------------------EEEEEETTTT
T ss_pred hhhhCch-hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC------------------------EeeeccccCC
Confidence 3567788 8998 7999999999999999999 79999742 4455556332
Q ss_pred CCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCC---ChHHHHHHHHHHhhCCCcEE
Q 041951 158 PYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGC---DSAGVLGAFDDAIADGVDVI 234 (726)
Q Consensus 158 ~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~---~~~~i~~ai~~A~~~g~dVI 234 (726)
..+.|..||||||||||+|+.. + +.||||+|+|+++|+++..+. ...++.++|++|++.|++||
T Consensus 60 --~~~~d~~gHGT~VAgiiag~g~------~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~Vi 126 (434)
T 1wmd_A 60 --NNANDTNGHGTHVAGSVLGNGS------T-----NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIH 126 (434)
T ss_dssp --TCCCCSSSHHHHHHHHHHCCSS------S-----SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEE
T ss_pred --CCCCCCCCcHHHHHHHHHcCCC------C-----ceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCeEE
Confidence 3567889999999999998631 1 389999999999999987663 45689999999999999999
Q ss_pred EEcccCCCCCCCcccHHHHHHHHh-hhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEe
Q 041951 235 TISIGGDSAVDFSEDAISIGAFHA-MAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAIS 309 (726)
Q Consensus 235 nlSlG~~~~~~~~~~~~~~a~~~a-~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 309 (726)
|||||......+ +....+++++ .++|+++|+||||+|.... |+.++++|+|||++..+...
T Consensus 127 n~S~G~~~~~~~--~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~------------ 192 (434)
T 1wmd_A 127 TNSWGAAVNGAY--TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF------------ 192 (434)
T ss_dssp EECCCBCCTTCC--CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG------------
T ss_pred EecCCCCcCCcC--CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc------------
Confidence 999998732222 3445556655 5899999999999997543 88999999999976432000
Q ss_pred eEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccce
Q 041951 310 GYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSF 389 (726)
Q Consensus 310 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~ 389 (726)
|.
T Consensus 193 ---------------------------------------------~~--------------------------------- 194 (434)
T 1wmd_A 193 ---------------------------------------------GS--------------------------------- 194 (434)
T ss_dssp ---------------------------------------------CG---------------------------------
T ss_pred ---------------------------------------------Cc---------------------------------
Confidence 00
Q ss_pred eeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCC
Q 041951 390 VVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSR 469 (726)
Q Consensus 390 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~ 469 (726)
.....+.++.||++
T Consensus 195 ------------------------------------------------------------------~~~~~~~~a~fS~~ 208 (434)
T 1wmd_A 195 ------------------------------------------------------------------YADNINHVAQFSSR 208 (434)
T ss_dssp ------------------------------------------------------------------GGSCTTSBCTTSCC
T ss_pred ------------------------------------------------------------------ccCCCCccccccCC
Confidence 00112568999999
Q ss_pred CCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCC-----CHHHH
Q 041951 470 GPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDW-----SPSAI 544 (726)
Q Consensus 470 Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~l-----s~~~i 544 (726)
||+. ++++||||+|||++|+++.+........ .....+.|..++|||||||||||++|||+|++|++ ++++|
T Consensus 209 G~~~--~g~~kpdi~ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~v 285 (434)
T 1wmd_A 209 GPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLL 285 (434)
T ss_dssp CCCT--TSCCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred CCCC--CCCCCceEEcCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 9998 8999999999999999998642210000 00012679999999999999999999999999876 99999
Q ss_pred HHHHHccccccCCCCCCCCCcccCCCCCCccccCCCC
Q 041951 545 KSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPG 581 (726)
Q Consensus 545 k~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~~ 581 (726)
|++|++||+++.... .+..+|||+||+.+|++..
T Consensus 286 k~~L~~tA~~~~~~~---~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 286 KAALIAGAADIGLGY---PNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp HHHHHHHCBCCSSCS---SCTTTTTCBCCHHHHHTCE
T ss_pred HHHHHcCCcccCCCC---CCccCCcCeEeHHHhcccc
Confidence 999999999864321 3678999999999999754
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=402.54 Aligned_cols=237 Identities=27% Similarity=0.356 Sum_probs=203.8
Q ss_pred CCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCC
Q 041951 89 GLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGH 168 (726)
Q Consensus 89 g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gH 168 (726)
.++ .+|..+++|+||+|||||||||++||+|.+. ++..++|.++ ...+.|..+|
T Consensus 17 ~~~-~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~~~-~~~~~d~~gH 70 (284)
T 1sh7_A 17 PLD-RNYNANFDGFGVTAYVIDTGVNNNHEEFGGR------------------------SVSGYDFVDN-DADSSDCNGH 70 (284)
T ss_dssp SCC-SBCCCSCCCTTCEEEEEESCCCTTCTTTTTC------------------------EEEEEETTTT-BSCCCCSSSH
T ss_pred Cch-hhhhcCCCCCCCEEEEEcCCCCCCChhHcCC------------------------ccccccccCC-CCCCCCCCCc
Confidence 345 7899999999999999999999999999843 3445555332 1356788999
Q ss_pred cccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhh--CCCcEEEEcccCCCCCC
Q 041951 169 GSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIA--DGVDVITISIGGDSAVD 245 (726)
Q Consensus 169 GThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~--~g~dVInlSlG~~~~~~ 245 (726)
||||||||+|+. .||||+|+|+.+|++++.+ ++.+++++||+|+++ .+++|||||||..
T Consensus 71 GT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~---- 132 (284)
T 1sh7_A 71 GTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGG---- 132 (284)
T ss_dssp HHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBS----
T ss_pred HHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCC----
Confidence 999999999873 6899999999999998776 678899999999997 4799999999987
Q ss_pred CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
....+..++.++.++|++||+||||+|.... |+..|++|+|||++.+
T Consensus 133 -~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 182 (284)
T 1sh7_A 133 -QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS----------------------------- 182 (284)
T ss_dssp -CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT-----------------------------
T ss_pred -CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC-----------------------------
Confidence 2356778888899999999999999997653 8889999999986422
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+.++.||++||.+ |
T Consensus 183 ----------------------------------------------------------~~~~~~S~~G~~~--------d 196 (284)
T 1sh7_A 183 ----------------------------------------------------------DSRSSFSNWGSCV--------D 196 (284)
T ss_dssp ----------------------------------------------------------SBBCTTCCBSTTC--------C
T ss_pred ----------------------------------------------------------CCcCcccCCCCcc--------E
Confidence 3468899999976 9
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCC
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSS 558 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~ 558 (726)
|+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++++||++|++||++....
T Consensus 197 i~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 259 (284)
T 1sh7_A 197 LFAPGSQIKSAWYD-------------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKVS 259 (284)
T ss_dssp EEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred EEeccCCeEEecCC-------------CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCcc
Confidence 99999999998865 5799999999999999999999999999999999999999999986543
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=397.51 Aligned_cols=238 Identities=28% Similarity=0.354 Sum_probs=202.9
Q ss_pred CCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCC
Q 041951 89 GLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGH 168 (726)
Q Consensus 89 g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gH 168 (726)
.+. .+|..+++|+||+|||||||||++||+|.+. +...++|.++ ..++.|..+|
T Consensus 19 ~~~-~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~------------------------~~~~~d~~~~-~~~~~d~~gH 72 (278)
T 2b6n_A 19 PLD-NNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR------------------------ASSGYDFIDN-DYDATDCNGH 72 (278)
T ss_dssp SCC-SEEECSCCCTTCEEEEEESCCCTTCGGGTTC------------------------EEEEEETTTT-BSCCCCSSSH
T ss_pred Ccc-hhcccCCCCCCCEEEEEeCCCCCCChhHhcc------------------------cccCeecCCC-CCCCCCCCCc
Confidence 344 7899999999999999999999999999843 3344555332 1346789999
Q ss_pred cccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhh--CCCcEEEEcccCCCCCC
Q 041951 169 GSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIA--DGVDVITISIGGDSAVD 245 (726)
Q Consensus 169 GThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~--~g~dVInlSlG~~~~~~ 245 (726)
||||||||+|.. .||||+|+|+.+|++++.+ +..+++++||+|+++ .+++|||||||...
T Consensus 73 GT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~--- 135 (278)
T 2b6n_A 73 GTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA--- 135 (278)
T ss_dssp HHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC---
T ss_pred HHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc---
Confidence 999999999862 6899999999999998776 778899999999997 59999999999872
Q ss_pred CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
...+..++.++.++|++||+||||+|.... |+..|++|+|||++.+
T Consensus 136 --~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 184 (278)
T 2b6n_A 136 --SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN----------------------------- 184 (278)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----------------------------
T ss_pred --CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC-----------------------------
Confidence 356777888889999999999999998654 8889999999986422
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+.++.||++||.+ |
T Consensus 185 ----------------------------------------------------------~~~~~~S~~G~~~--------d 198 (278)
T 2b6n_A 185 ----------------------------------------------------------DSRSSFSNYGTCL--------D 198 (278)
T ss_dssp ----------------------------------------------------------SBBCTTCCBSTTC--------C
T ss_pred ----------------------------------------------------------CCcCCcCCCCCCC--------e
Confidence 3467899999865 9
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCC
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNS 557 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~ 557 (726)
|+|||++|++++.... +.|..++|||||||||||++|||+|++|+|++.+||++|++||++...
T Consensus 199 i~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 262 (278)
T 2b6n_A 199 IYAPGSSITSSWYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADKV 262 (278)
T ss_dssp EEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred EEeCCCCeECcccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCc
Confidence 9999999999876421 578999999999999999999999999999999999999999987543
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-47 Score=395.55 Aligned_cols=238 Identities=27% Similarity=0.343 Sum_probs=205.4
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~g 167 (726)
+.+. .+|..+.+|+||+|||||||||++||+|.+. +...+++.. ....|..|
T Consensus 18 ~~~~-~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~~---~~~~d~~g 69 (276)
T 4dzt_A 18 LPLS-NSYTYTATGRGVNVYVIDTGIRTTHREFGGR------------------------ARVGYDALG---GNGQDCNG 69 (276)
T ss_dssp SSCC-SCEECSCCCTTCEEEEEESCCCTTCGGGTTC------------------------EEEEEETTS---SCSCCSSS
T ss_pred CCcc-cceecCCCCCCcEEEEEccCCCCCChhHccC------------------------eeccccCCC---CCCCCCCC
Confidence 4455 7899999999999999999999999999843 334444533 34567899
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhC--CCcEEEEcccCCCCC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIAD--GVDVITISIGGDSAV 244 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~--g~dVInlSlG~~~~~ 244 (726)
|||||||||+|.. .||||+|+|+.+|++++.+ ....+++++++|+++. +++|||||||...
T Consensus 70 HGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~-- 133 (276)
T 4dzt_A 70 HGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV-- 133 (276)
T ss_dssp HHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--
T ss_pred CHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC--
Confidence 9999999999873 7899999999999998776 7888999999999986 8999999999872
Q ss_pred CCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCc
Q 041951 245 DFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGR 321 (726)
Q Consensus 245 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 321 (726)
...+..++.++.++|+++|+||||+|.... |+..+++|+|||++.+
T Consensus 134 ---~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 182 (276)
T 4dzt_A 134 ---STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS---------------------------- 182 (276)
T ss_dssp ---CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------------------------
T ss_pred ---CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC----------------------------
Confidence 467788888899999999999999998765 8889999999985422
Q ss_pred eeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehh
Q 041951 322 RFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQD 401 (726)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~ 401 (726)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccC
Q 041951 402 SLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKP 481 (726)
Q Consensus 402 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 481 (726)
+.++.||++||..
T Consensus 183 -----------------------------------------------------------~~~~~~S~~g~~~-------- 195 (276)
T 4dzt_A 183 -----------------------------------------------------------DARASFSNYGSCV-------- 195 (276)
T ss_dssp -----------------------------------------------------------SBBCTTCCBSTTC--------
T ss_pred -----------------------------------------------------------CCcCCcCCCCCCc--------
Confidence 3568899999977
Q ss_pred ceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCC
Q 041951 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSS 558 (726)
Q Consensus 482 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~ 558 (726)
||+|||++|++++.... ..|..++|||||||+|||++|||+|++|+|++++||++|++||++....
T Consensus 196 dv~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 196 DLFAPGASIPSAWYTSD-----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLS 261 (276)
T ss_dssp CEEEECSSEEEECTTSS-----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred eEEeCCCCeEccccCCC-----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccC
Confidence 99999999999887532 5799999999999999999999999999999999999999999987654
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-47 Score=396.23 Aligned_cols=238 Identities=29% Similarity=0.348 Sum_probs=203.8
Q ss_pred ccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccch
Q 041951 94 ITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTA 173 (726)
Q Consensus 94 ~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVA 173 (726)
.|. ..+|+||+|||||||||++||+|.+. +...++|. ..+.|..+||||||
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~------------------------~~~~~~~~----~~~~d~~gHGT~vA 74 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR------------------------AQMVKTYY----YSSRDGNGHGTHCA 74 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC------------------------EEEEEESS----SCSSCSSSHHHHHH
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc------------------------cccccCCC----CCCCCCCCCHHHHH
Confidence 454 37899999999999999999999843 33444553 23667899999999
Q ss_pred hhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCC-------cEEEEcccCCCCCC
Q 041951 174 STASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGV-------DVITISIGGDSAVD 245 (726)
Q Consensus 174 Giaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~-------dVInlSlG~~~~~~ 245 (726)
|||+|+. .||||+|+|+.+|++++.+ ++.+++++||+||+++++ +|||||||..
T Consensus 75 giia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~---- 136 (279)
T 2pwa_A 75 GTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG---- 136 (279)
T ss_dssp HHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----
T ss_pred HHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC----
Confidence 9999862 7899999999999998876 788899999999999887 9999999976
Q ss_pred CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
....+..++.++.++|++||+||||+|.... |+..|++|+|||++.+
T Consensus 137 -~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 186 (279)
T 2pwa_A 137 -YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY----------------------------- 186 (279)
T ss_dssp -CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----------------------------
T ss_pred -CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC-----------------------------
Confidence 2467788888899999999999999998754 8899999999986422
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+.++.||++||.+ |
T Consensus 187 ----------------------------------------------------------~~~~~~S~~G~~~--------d 200 (279)
T 2pwa_A 187 ----------------------------------------------------------DRRSSFSNYGSVL--------D 200 (279)
T ss_dssp ----------------------------------------------------------SBBCTTCCBSTTC--------C
T ss_pred ----------------------------------------------------------CCcCCcCCCCCcc--------e
Confidence 3468899999965 9
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCC
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTE 562 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~ 562 (726)
|+|||++|+++++. +.|..++|||||||||||++|||+|+ |++++.+||++|++||++....
T Consensus 201 i~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~~---- 262 (279)
T 2pwa_A 201 IFGPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDLS---- 262 (279)
T ss_dssp EEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCCB----
T ss_pred EEEecCCeEEeecC-------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCcccccC----
Confidence 99999999999876 57999999999999999999999999 9999999999999999986532
Q ss_pred CCcccCCCCCCcc
Q 041951 563 AEFAYGSGHVNPV 575 (726)
Q Consensus 563 ~~~~~G~G~in~~ 575 (726)
.+|+|..|+.
T Consensus 263 ---~~~~g~~n~l 272 (279)
T 2pwa_A 263 ---NIPFGTVNLL 272 (279)
T ss_dssp ---SCCTTSCCEE
T ss_pred ---CCCCCCccEe
Confidence 3677877764
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=418.68 Aligned_cols=279 Identities=14% Similarity=0.126 Sum_probs=214.0
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC-C----CCCC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA-P----YDTA 162 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~-~----~~~~ 162 (726)
++++ .+|+.+++|+||+|||||||||++||+|.+.-. . ...++|.++ . ...+
T Consensus 25 i~~~-~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~------------~----------~~~~d~~~~~~~p~~~~~~ 81 (471)
T 1p8j_A 25 LNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------P----------GASFDVNDQDPDPQPRYTQ 81 (471)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------G----------GGCEETTTTBSCCCCCCCT
T ss_pred CChH-HHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC------------c----------cCcccccCCCCCCCCccCC
Confidence 5666 999999999999999999999999999985310 0 012233211 1 1134
Q ss_pred CCCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh-CCCcEEEEcccCC
Q 041951 163 RDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA-DGVDVITISIGGD 241 (726)
Q Consensus 163 ~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~-~g~dVInlSlG~~ 241 (726)
.|..+|||||||||+|... +..|. .||||+|+|+.+|+++ +..+++++|++++++ ++++|||||||..
T Consensus 82 ~d~~gHGT~vAGiiaa~~~---n~~g~-----~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~S~G~~ 150 (471)
T 1p8j_A 82 MNDNRHGTRCAGEVAAVAN---NGVCG-----VGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPE 150 (471)
T ss_dssp TCTTCHHHHHHHHHHCCSS---SSSSC-----CCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEECCBSC
T ss_pred CCCCCcHHHHHHHHHeecc---CCCCC-----EEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEeccCcC
Confidence 6789999999999999753 22233 8999999999999985 346789999999999 9999999999986
Q ss_pred CCCC---CcccHHHHHHHHhh-----hCCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCee
Q 041951 242 SAVD---FSEDAISIGAFHAM-----AKGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKA 307 (726)
Q Consensus 242 ~~~~---~~~~~~~~a~~~a~-----~~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 307 (726)
.... .....+..++.++. .+|++||+||||+|.... +..++++|+|||++.+
T Consensus 151 ~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~-------------- 216 (471)
T 1p8j_A 151 DDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF-------------- 216 (471)
T ss_dssp CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT--------------
T ss_pred CCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC--------------
Confidence 3211 11233444444444 369999999999997632 4456899999986422
Q ss_pred EeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCcc
Q 041951 308 ISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKV 387 (726)
Q Consensus 308 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~ 387 (726)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeeccc
Q 041951 388 SFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFS 467 (726)
Q Consensus 388 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fS 467 (726)
+.++.||
T Consensus 217 -------------------------------------------------------------------------g~~a~~S 223 (471)
T 1p8j_A 217 -------------------------------------------------------------------------GNVPWYS 223 (471)
T ss_dssp -------------------------------------------------------------------------SCCCTTC
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 3468899
Q ss_pred CCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 041951 468 SRGPNAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSA 547 (726)
Q Consensus 468 S~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~ 547 (726)
++||.. ....+|+..+||.+|+++.... ..|..++|||||||||||++|||+|++|+|++.+||++
T Consensus 224 ~~g~~~--~~~~~~~~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~ 289 (471)
T 1p8j_A 224 EACSST--LATTYSSGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 289 (471)
T ss_dssp CBCTTC--CEEEECCCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCcc--eEEeCCCCCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHH
Confidence 999987 4455666666778999987642 46899999999999999999999999999999999999
Q ss_pred HHccccccCCCCCC--------CCCcccCCCCCCccccCCCC
Q 041951 548 IMTTAWAMNSSKNT--------EAEFAYGSGHVNPVKAINPG 581 (726)
Q Consensus 548 L~~TA~~~~~~~~~--------~~~~~~G~G~in~~~Al~~~ 581 (726)
|++||++++..... ..+..||+|+||+.+|++..
T Consensus 290 L~~tA~~~~~~~~~~~~n~~g~~~~~~~G~G~vda~~Av~~a 331 (471)
T 1p8j_A 290 VVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALA 331 (471)
T ss_dssp HHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHHHH
T ss_pred HHhcCccCCCCCCCceecCCCcccCCCCCCEEEcHhHHHHHh
Confidence 99999998654210 02468999999999999853
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=386.36 Aligned_cols=229 Identities=29% Similarity=0.367 Sum_probs=197.5
Q ss_pred cccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccc
Q 041951 93 SITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHT 172 (726)
Q Consensus 93 ~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThV 172 (726)
.+|... +|+||+|||||||||++||+|.+. +...+.|..+ ..|..||||||
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~------------------------~~~~~~~~~~----~~d~~gHGT~v 74 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR------------------------AKQIKSYAST----ARDGHGHGTHC 74 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC------------------------EEEEEECSSS----SSCSSSHHHHH
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc------------------------cccccCCCCC----CCCCCCcHHHH
Confidence 466666 999999999999999999999843 4445555332 23889999999
Q ss_pred hhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCC-------CcEEEEcccCCCCC
Q 041951 173 ASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADG-------VDVITISIGGDSAV 244 (726)
Q Consensus 173 AGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g-------~dVInlSlG~~~~~ 244 (726)
||||+|+. .||||+|+|+.+|+++..+ +..+++++|++|+++++ ++|||||||..
T Consensus 75 Agii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~--- 137 (279)
T 3f7m_A 75 AGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG--- 137 (279)
T ss_dssp HHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE---
T ss_pred HHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC---
Confidence 99999863 6899999999999998876 78889999999999876 89999999976
Q ss_pred CCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCc
Q 041951 245 DFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGR 321 (726)
Q Consensus 245 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 321 (726)
....+..++.++.++|++||+||||+|.... |+..|++|+|||++.+
T Consensus 138 --~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 187 (279)
T 3f7m_A 138 --YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN---------------------------- 187 (279)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------------------------
T ss_pred --ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC----------------------------
Confidence 3467788888899999999999999998765 8889999999986422
Q ss_pred eeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehh
Q 041951 322 RFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQD 401 (726)
Q Consensus 322 ~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~ 401 (726)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccC
Q 041951 402 SLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKP 481 (726)
Q Consensus 402 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 481 (726)
+.++.||++||..
T Consensus 188 -----------------------------------------------------------~~~~~~S~~g~~~-------- 200 (279)
T 3f7m_A 188 -----------------------------------------------------------DVRSTFSNYGRVV-------- 200 (279)
T ss_dssp -----------------------------------------------------------SBBCTTCCBSTTC--------
T ss_pred -----------------------------------------------------------CCCCCCCCCCCCC--------
Confidence 3468899999966
Q ss_pred ceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCC
Q 041951 482 DISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSS 558 (726)
Q Consensus 482 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~ 558 (726)
||+|||++|+++.+. +.|..++|||||||+|||++|||+|++|+ ++++||++|++||++....
T Consensus 201 di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~~ 263 (279)
T 3f7m_A 201 DIFAPGTSITSTWIG-------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVLT 263 (279)
T ss_dssp CEEEECSSEEEECGG-------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCCB
T ss_pred eEEECCCCeEeecCC-------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccccc
Confidence 999999999999875 56899999999999999999999999999 9999999999999886543
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=416.24 Aligned_cols=275 Identities=15% Similarity=0.171 Sum_probs=213.9
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC--CCCCCCCC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA--PYDTARDE 165 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~--~~~~~~D~ 165 (726)
++++ .+|..+++|+||+|||||+|||++||+|.+.- + ..+.++|.++ +..+..|.
T Consensus 41 i~~~-~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~---------------~~~~~d~~~~~~~~~p~~d~ 97 (503)
T 2id4_A 41 INVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C---------------AEGSWDFNDNTNLPKPRLSD 97 (503)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C---------------GGGCEETTTTBSCCCCCSTT
T ss_pred cChH-HHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c---------------ccCcccCCCCCCCCCCCCCC
Confidence 5555 89999999999999999999999999998541 0 0012344222 11233578
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVD 245 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~ 245 (726)
.||||||||||+|... +..|. .||||+|+|+.+|+++.. .+..++++||+||++.+ +|||||||......
T Consensus 98 ~gHGT~vAGiiaa~~~---n~~~~-----~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~ 167 (503)
T 2id4_A 98 DYHGTRCAGEIAAKKG---NNFCG-----VGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWGPADDGR 167 (503)
T ss_dssp TTHHHHHHHHHHCCSS---SSSSC-----CCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEESCCSSS
T ss_pred CChHHHHHHHHHhccC---CCCCc-----EEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCCCcCCCCc
Confidence 8999999999999752 22333 899999999999998643 67888999999999998 99999999873211
Q ss_pred C---cccHHHHHHHHhh-----hCCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeE
Q 041951 246 F---SEDAISIGAFHAM-----AKGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGY 311 (726)
Q Consensus 246 ~---~~~~~~~a~~~a~-----~~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 311 (726)
. ....+..++.++. .+|++||+||||+|.... ...++++|+|||++.+
T Consensus 168 ~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~------------------ 229 (503)
T 2id4_A 168 HLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK------------------ 229 (503)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT------------------
T ss_pred cccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC------------------
Confidence 1 2234555666555 479999999999997543 2356789999986422
Q ss_pred EeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceee
Q 041951 312 SINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVV 391 (726)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~ 391 (726)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCC
Q 041951 392 SLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGP 471 (726)
Q Consensus 392 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp 471 (726)
+.++.||++||
T Consensus 230 ---------------------------------------------------------------------~~~a~~S~~g~ 240 (503)
T 2id4_A 230 ---------------------------------------------------------------------DLHPPYSEGCS 240 (503)
T ss_dssp ---------------------------------------------------------------------SCCCTTCCCCT
T ss_pred ---------------------------------------------------------------------CCcCCcCCCCC
Confidence 34688999999
Q ss_pred CCCCCCCccCceEe----CCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 041951 472 NAIVPEILKPDISA----PGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSA 547 (726)
Q Consensus 472 ~~~~~~~~KPDI~A----PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~ 547 (726)
.. |++| ||..|+++.... +.|..++|||||||||||++|||+|++|+|++.+||++
T Consensus 241 ~~--------~~~a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~ 300 (503)
T 2id4_A 241 AV--------MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYL 300 (503)
T ss_dssp TE--------EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred cc--------eEeecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHH
Confidence 87 8887 899999985431 67999999999999999999999999999999999999
Q ss_pred HHccccccCCC-CC--------CCCCcccCCCCCCccccCCCCc
Q 041951 548 IMTTAWAMNSS-KN--------TEAEFAYGSGHVNPVKAINPGL 582 (726)
Q Consensus 548 L~~TA~~~~~~-~~--------~~~~~~~G~G~in~~~Al~~~l 582 (726)
|++||+++... .. ...+..||+|+||+.+|++...
T Consensus 301 L~~tA~~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 301 SILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp HHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHHHT
T ss_pred HHhccccCCCCcCCCceecCCCCccCcccCCcEecHHHHHHHHh
Confidence 99999998754 10 0024689999999999998543
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=408.00 Aligned_cols=239 Identities=21% Similarity=0.231 Sum_probs=188.5
Q ss_pred cccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeee-cCCCC----CCCCCCCcC
Q 041951 93 SITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARY-YTPAP----YDTARDEEG 167 (726)
Q Consensus 93 ~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~-~~~~~----~~~~~D~~g 167 (726)
..|..+.+|+||+|+|||||||++||+|.++- ....+. +.+++ ...+.|..|
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-----------------------~~~~~~~v~~~dg~~f~~~~~D~~G 73 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-----------------------MVTDFENVPEEDGTRFHRQASKCDS 73 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTE-----------------------EEEEEECCCCCC-------CTTTTH
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccc-----------------------cccCcccccCCCCccccCCCCCCCC
Confidence 47888999999999999999999999998530 111111 11110 134568899
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhh------CCCcEEEEcccC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIA------DGVDVITISIGG 240 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~------~g~dVInlSlG~ 240 (726)
|||||||||+|+. .||||+|+|+.+|++++.| ++.+++++||+|+++ .+++|||||||+
T Consensus 74 HGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg 139 (546)
T 2qtw_B 74 HGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAG 139 (546)
T ss_dssp HHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEE
T ss_pred hHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCC
Confidence 9999999999873 6899999999999998877 678899999999987 489999999997
Q ss_pred CCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCC
Q 041951 241 DSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFA 317 (726)
Q Consensus 241 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (726)
. ....+..++.++.++|++||+||||+|.... |+..|++|+|||++.+...
T Consensus 140 ~-----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~--------------------- 193 (546)
T 2qtw_B 140 G-----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP--------------------- 193 (546)
T ss_dssp E-----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB---------------------
T ss_pred C-----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc---------------------
Confidence 6 2467778888899999999999999998654 8999999999987543100
Q ss_pred CCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEE
Q 041951 318 MKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVA 397 (726)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~ 397 (726)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCC
Q 041951 398 VSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPE 477 (726)
Q Consensus 398 i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 477 (726)
...-..||++||.
T Consensus 194 --------------------------------------------------------------a~~s~~fSn~G~~----- 206 (546)
T 2qtw_B 194 --------------------------------------------------------------VTLGTLGTNFGRC----- 206 (546)
T ss_dssp --------------------------------------------------------------CEETTEECCBSTT-----
T ss_pred --------------------------------------------------------------ccccCCcCCCCCc-----
Confidence 0000128999984
Q ss_pred CccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccccc
Q 041951 478 ILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAM 555 (726)
Q Consensus 478 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~ 555 (726)
|||+|||++|+++++... +.|..++|||||||||||++|||+|++|+|++.+||++|++||.+.
T Consensus 207 ---vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~ 270 (546)
T 2qtw_B 207 ---VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 270 (546)
T ss_dssp ---CCEEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEES
T ss_pred ---ceEEecCccEEeeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 499999999999987531 5799999999999999999999999999999999999999999764
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=408.09 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=110.5
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeec-CCC-CCCCCCCC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY-TPA-PYDTARDE 165 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~-~~~-~~~~~~D~ 165 (726)
+.+. .+|.++++|+||+|||||||||++||||.++ + ..+.+++ .++ +..+..|.
T Consensus 57 inv~-~aw~~g~tG~GV~VaViDtGid~~HpDL~~n-~----------------------~~~~~~~~~~~~dp~p~~~~ 112 (600)
T 3hjr_A 57 LNLW-WAHRTGVLGQGVNVAVVDDGLAIAHPDLADN-V----------------------RPGSKNVVTGSDDPTPTDPD 112 (600)
T ss_dssp CCCH-HHHHHTCSCTTCEEEEESSCCCTTCTTTGGG-B----------------------CSCCBCTTTSSSCCCCCSTT
T ss_pred cCHH-HHHHcCCCCCCeEEEEEcCCCCCCChhHhhc-c----------------------ccCcceeecCCCCCCCCCCC
Confidence 3344 8999999999999999999999999999853 0 0122233 222 12334467
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHH-HHHhhCCCcEEEEcccCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAF-DDAIADGVDVITISIGGDSA 243 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai-~~A~~~g~dVInlSlG~~~~ 243 (726)
++|||||||||||.. |..|. .||||+|+|+.+|++++.+ ...++++.|+ +++..++++|||+|||....
T Consensus 113 ~gHGThVAGiIAa~~----n~~g~-----~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~ 183 (600)
T 3hjr_A 113 TAHGTSVSGIIAAVD----NAIGT-----KGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVV 183 (600)
T ss_dssp CCHHHHHHHHHHCCS----SSSSC-----CCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCS
T ss_pred CChHHHHHHHHhEeC----CCCCc-----EEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCcccc
Confidence 899999999999862 33444 8999999999999998776 6677777666 66778899999999997632
Q ss_pred CCCccc-----HHHHHHHH--hhhCCcEEEEccCCCCCC
Q 041951 244 VDFSED-----AISIGAFH--AMAKGVLTLNSAGNSGPG 275 (726)
Q Consensus 244 ~~~~~~-----~~~~a~~~--a~~~Gv~vV~AAGN~g~~ 275 (726)
.....+ .+..++.. +..+|+++|+||||.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~ 222 (600)
T 3hjr_A 184 DPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNK 222 (600)
T ss_dssp SCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSE
T ss_pred CCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCcccc
Confidence 222211 12222222 236799999999997653
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-24 Score=244.47 Aligned_cols=94 Identities=28% Similarity=0.412 Sum_probs=76.3
Q ss_pred eeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh---CCCcEEEEcccCCCCCCC---cccHHHHHHHHhhhCCcEEEE
Q 041951 194 ARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA---DGVDVITISIGGDSAVDF---SEDAISIGAFHAMAKGVLTLN 267 (726)
Q Consensus 194 ~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~---~g~dVInlSlG~~~~~~~---~~~~~~~a~~~a~~~Gv~vV~ 267 (726)
+.||||+|+|+.|++. ...++++++|+||++ ++++|||+|||... ..+ ....+..++.+|..+||+||+
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e-~~~~~~~~~~~~~~~~~a~~~Gi~vv~ 348 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPE-DSWAPASIAAMNRAFLDAAALGVTVLA 348 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEG-GGSCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCc-ccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4899999999999983 346789999999998 79999999999872 111 123566667778899999999
Q ss_pred ccCCCCCCC-------C---CCCCCceEEEecccC
Q 041951 268 SAGNSGPGL-------T---ASVAPWLMSVAASTT 292 (726)
Q Consensus 268 AAGN~g~~~-------~---~~~~p~vitVga~~~ 292 (726)
||||+|... . |+.+|++++||+++.
T Consensus 349 AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 349 AAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp ECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred ecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 999999642 1 899999999999764
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-21 Score=206.43 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=79.3
Q ss_pred eeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh-CCCcEEEEcccCCCC---CCCcccHHHHHHHHhhhCCcEEEEccC
Q 041951 195 RGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA-DGVDVITISIGGDSA---VDFSEDAISIGAFHAMAKGVLTLNSAG 270 (726)
Q Consensus 195 ~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~-~g~dVInlSlG~~~~---~~~~~~~~~~a~~~a~~~Gv~vV~AAG 270 (726)
..+||+++++.|++.+..+++.++++++|+||++ ++++|||+|||.... .......+..++..|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4578999999999986655778899999999997 899999999998721 111234566777778889999999999
Q ss_pred CCCCCC--------------C-CCCCCceEEEecccC
Q 041951 271 NSGPGL--------------T-ASVAPWLMSVAASTT 292 (726)
Q Consensus 271 N~g~~~--------------~-~~~~p~vitVga~~~ 292 (726)
|+|... . |+.+|++++||+++.
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 999652 1 889999999999764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-10 Score=102.45 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=65.5
Q ss_pred cEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCHHHHHHHHcCCCeEEEEeceeecc
Q 041951 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTLQL 79 (726)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~ 79 (726)
++|||+|++... ....+.|++||++++..+....+++|+|++.|+||+++|+++++++|+++|+|.+|++++.++.
T Consensus 38 ~~YIV~lk~~~~--~~~~~~h~~~l~s~~~~~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 38 GTYVVVLKEETH--LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp EEEEEEECTTCC--HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CcEEEEECCCCC--HHHHHHHHHHHHHHhhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 589999998765 4445579999999876444567999999999999999999999999999999999999998764
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-09 Score=119.94 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=62.9
Q ss_pred eeecCCcEEEEEEeeCCCCCChHHHHHHHHHHh--hCCCcEEEEcccCCCCC--CCcccHHHHHHHHhhhCCcEEEEccC
Q 041951 195 RGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAI--ADGVDVITISIGGDSAV--DFSEDAISIGAFHAMAKGVLTLNSAG 270 (726)
Q Consensus 195 ~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~--~~g~dVInlSlG~~~~~--~~~~~~~~~a~~~a~~~Gv~vV~AAG 270 (726)
.+++++..++.|...+. ....+.++..+++.. .+-++|||+|||..... ..+...+...+..+..+||.|++|+|
T Consensus 262 ~a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASG 340 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASG 340 (544)
T ss_dssp HHHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 44556666666644211 112234555555543 34689999999988211 11223345555667889999999999
Q ss_pred CCCCCC-----------C-CCCCCceEEEecccC
Q 041951 271 NSGPGL-----------T-ASVAPWLMSVAASTT 292 (726)
Q Consensus 271 N~g~~~-----------~-~~~~p~vitVga~~~ 292 (726)
|+|... . |+.+|||++||+++.
T Consensus 341 D~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 341 DSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp SSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 998642 2 899999999999764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=85.35 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=57.6
Q ss_pred CcEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCHHHHHHHHcCCCeEEEEeceeeccc
Q 041951 1 MQVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTLQLH 80 (726)
Q Consensus 1 ~~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~~ 80 (726)
.+.|||.|++.... ...|.++++. .+.+++++|+. |+||+++++++++++|+++|+|.+|++++.++++
T Consensus 8 ~~~YIV~~k~~~~~----~~~~~~~~~~------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~ 76 (80)
T 3cnq_P 8 EKKYIVGFKQGFKS----CAKKEDVISE------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRAL 76 (80)
T ss_dssp CCEEEEEECTTCCS----HHHHHHHHHT------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEEC
T ss_pred CCCEEEEECCCCCh----HHHHHHHHHH------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEe
Confidence 36899999977661 2224444432 34689999988 9999999999999999999999999999999987
Q ss_pred ccC
Q 041951 81 TTR 83 (726)
Q Consensus 81 ~~~ 83 (726)
++.
T Consensus 77 tt~ 79 (80)
T 3cnq_P 77 SAT 79 (80)
T ss_dssp CC-
T ss_pred eec
Confidence 764
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-08 Score=90.91 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=60.8
Q ss_pred cEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCHHHHHHHHcCCCeEEEEeceeecc
Q 041951 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTLQL 79 (726)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~ 79 (726)
+.|||.|++... ......|.+++.+.........+++|+|++.|+||++++++++++.|+++|+|.+|++++.++.
T Consensus 48 ~~YIV~~K~~~~--~~~~~~~~~~l~~~~~~r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 48 GTYVVVLKEETH--LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp EEEEEEECTTCC--HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCEEEEECCCCC--HHHHHHHHHHHHHHHhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 589999998765 3333446666666543222456899999999999999999999999999999999999998764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=77.95 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=58.8
Q ss_pred CcEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEe-ccceeEEEEEeCHHHHHHHHcC--CCeEEEEeceee
Q 041951 1 MQVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSY-RRSFNGFAAKLTVDERQKLASM--EKVVSVFPSRTL 77 (726)
Q Consensus 1 ~~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y-~~~~~g~s~~l~~~~~~~L~~~--p~V~~v~~~~~~ 77 (726)
++.|||.|++... ......|.++++... .++.|.| ..+|+||++.++++.++.|+++ |.|.+||+++.+
T Consensus 2 ~~sYIV~lk~~~~--~~~~~~~~~~~~~~g------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v 73 (76)
T 1v5i_B 2 AGKFIVIFKNDVS--EDKIRETKDEVIAEG------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVA 73 (76)
T ss_dssp CEEEEEEECTTCC--HHHHHHHHHHHHHHT------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEE
T ss_pred CceEEEEECCCCC--HHHHHHHHHHHHhhC------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEE
Confidence 3689999998766 344556777777653 4789999 4899999999999999999999 889999999887
Q ss_pred cc
Q 041951 78 QL 79 (726)
Q Consensus 78 ~~ 79 (726)
+.
T Consensus 74 ~~ 75 (76)
T 1v5i_B 74 HA 75 (76)
T ss_dssp EC
T ss_pred eC
Confidence 64
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00013 Score=57.65 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=50.0
Q ss_pred cEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCHHHHHHHHcCCCeEEEEeceeec
Q 041951 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTLQ 78 (726)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 78 (726)
-+|||.+++... ..+++ ...+.+|.++| ..+++++++||.+.++.|+++|+|++|++|...+
T Consensus 2 ~~~IV~f~~~~~--------~~~~i------~~~gG~i~~~~-~~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 2 IRVIVSVDKAKF--------NPHEV------LGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp EEEEEEECGGGC--------CGGGG------GGGTCEEEEEC-SSSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred eeEEEEEcCcch--------hHHHH------HHCCCEEEEEe-cCCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 479999986421 11122 34467999999 8899999999999999999999999999998764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0012 Score=63.81 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=59.7
Q ss_pred CCCCcCCCCCCCCc-------ccccEEEEeec------cchHHHHhcCceEEEEeccCC-Ccc------ceeeecCEEEe
Q 041951 339 SSQECNPGCVNGSL-------VKGKIVICQSF------KNYPEVRKAGAAGTVLLNNEF-DKV------SFVVSLPAVAV 398 (726)
Q Consensus 339 ~~~~c~~~~~~~~~-------~~gkiv~~~~~------~~~~~~~~~G~~g~i~~~~~~-~~~------~~~~~~p~~~i 398 (726)
...+|.+....... .+|+|+|++|. +|..+++++||.++||+|+.. ... .....||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 46789987653322 47899999983 688999999999999999852 111 22346999999
Q ss_pred ehhhHHHHHHHHhcCc
Q 041951 399 SQDSLSSLISYKESTK 414 (726)
Q Consensus 399 ~~~~g~~l~~~~~~~~ 414 (726)
+..+|..|++.+..+.
T Consensus 162 s~~~G~~L~~~L~~G~ 177 (194)
T 3icu_A 162 GNLKGTKILQSIQRGI 177 (194)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHCCC
Confidence 9999999999998877
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.049 Score=48.49 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=52.5
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE-cCCeeEEeE
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIVSASLVWS-DGNHWVRSP 721 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~-~~~~~v~~P 721 (726)
+.+.+.+++|+|..+..|+..... -++++|.+-.+ ++|++.+++|+|.+.. .+.+.+.|... +++..+.++
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~~v~ 113 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKVFVS 113 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEECCE
T ss_pred eEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEEEEE
Confidence 456778899999988888877543 35568999999 8999999999999985 34456666654 544444444
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.52 Score=51.25 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=50.0
Q ss_pred CCcccccEEEEee-----ccchHHHHhcCceEEEEeccCCCccc------eeeecCEEEeehhhHHHHHHHHh
Q 041951 350 GSLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEFDKVS------FVVSLPAVAVSQDSLSSLISYKE 411 (726)
Q Consensus 350 ~~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~~~~~------~~~~~p~~~i~~~~g~~l~~~~~ 411 (726)
..+++||||++.+ .+|..+++++||.|+|++++...... ....+|.+.++.+++..|...+.
T Consensus 110 ~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 110 GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred CCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 4479999999986 46888999999999999998643221 23468999999999999988873
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.11 E-value=0.21 Score=61.14 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=23.4
Q ss_pred cCCCCCCcEEEEEeccCCCCCCCCC
Q 041951 97 KRSVESNLIVGVIDTGIWPESESFS 121 (726)
Q Consensus 97 ~~~~G~GVvVaVIDtGid~~Hp~f~ 121 (726)
..++|+||+|||+|||||+.+|.|.
T Consensus 31 P~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 31 PEYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TTCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCCccEEEEEeCCCCCCCCcce
Confidence 3789999999999999999999997
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.41 E-value=0.57 Score=40.45 Aligned_cols=81 Identities=5% Similarity=0.010 Sum_probs=54.3
Q ss_pred CCCCcEEEeecCCCceEEEEEEEEEEcCCCCeeEEEEEec-CCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeE
Q 041951 627 LNYPSMAAQVSSGKSFVVNFPRTVTNVGVANSTYRAKVLQ-NSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIV 705 (726)
Q Consensus 627 ln~ps~~~~~~~~~~~~~~~~rtv~n~g~~~~ty~~~~~~-~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~ 705 (726)
|+...+-+....-+ ...+.+.+++|.|+.+..|+..... +.+...+++|.+-.+ ++|++++++|++.+.. . +.+
T Consensus 12 ~~~~~ldFG~v~~g-~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~--~-g~f 86 (112)
T 2e6j_A 12 FNFELLDIGKVFTG-SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII--L-GNF 86 (112)
T ss_dssp ESCSEEEEEEEESS-CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC--C-EEE
T ss_pred ECcccEecEeEEEC-CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC--c-ceE
Confidence 34444444443321 2456677899999999999984321 223346779999999 8999999999999974 2 344
Q ss_pred EEEEEEE
Q 041951 706 SASLVWS 712 (726)
Q Consensus 706 ~G~~~~~ 712 (726)
.-.|.+.
T Consensus 87 ~~~i~v~ 93 (112)
T 2e6j_A 87 EEEFLVN 93 (112)
T ss_dssp EEEECEE
T ss_pred EEEEEEE
Confidence 4556664
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.10 E-value=2.9 Score=37.88 Aligned_cols=83 Identities=16% Similarity=0.002 Sum_probs=58.6
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecC----CceEEEEEcCEEEEeeCCcEEEEEEEEEeecC------CCCCeEEEEEEEE
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQN----SKISIKVVPDVLSFKSLNEKKSFSVTVTGKGV------PQGAIVSASLVWS 712 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~----~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~------~~~~~~~G~~~~~ 712 (726)
..+.+.|++|+|.-+.+|++..... ..--++++|..-++ ++|++.++.|++.+... ....-.+.-|++.
T Consensus 44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~ 122 (140)
T 3qbt_B 44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH 122 (140)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEE
T ss_pred eeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEEE
Confidence 3456778899999999999974321 12236678999999 89999999999997541 1113346666664
Q ss_pred -cCCeeEEeEEEEEc
Q 041951 713 -DGNHWVRSPIVVHA 726 (726)
Q Consensus 713 -~~~~~v~~P~~v~~ 726 (726)
.++....+|+.-.|
T Consensus 123 Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 123 LDRGKDYFLTISGNY 137 (140)
T ss_dssp ETTSCEEEEEEEEEE
T ss_pred eecCCcEEEEEeccc
Confidence 67777788876543
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=88.27 E-value=1.8 Score=37.88 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=45.2
Q ss_pred EEEEEEEEEEcCCCCeeEEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeec
Q 041951 643 VVNFPRTVTNVGVANSTYRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKG 698 (726)
Q Consensus 643 ~~~~~rtv~n~g~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 698 (726)
.-..+.++.|....+.+|+++++..+|+.+. .|..+++ ++|+..++.|.|.+++
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 3457888999999999999999987776653 3667898 8999999999999876
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=85.78 E-value=1.8 Score=47.22 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=48.8
Q ss_pred CCcccccEEEEeecc--------------c----hHHHHhcCceEEEEeccCCCcc-----------ceeeecCEEEeeh
Q 041951 350 GSLVKGKIVICQSFK--------------N----YPEVRKAGAAGTVLLNNEFDKV-----------SFVVSLPAVAVSQ 400 (726)
Q Consensus 350 ~~~~~gkiv~~~~~~--------------~----~~~~~~~G~~g~i~~~~~~~~~-----------~~~~~~p~~~i~~ 400 (726)
..+++||||++.+.. | ..++.++||.|+|++++..... .....+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 458999999998722 1 2358899999999998643210 1134689999999
Q ss_pred hhHHHHHHHHhcCc
Q 041951 401 DSLSSLISYKESTK 414 (726)
Q Consensus 401 ~~g~~l~~~~~~~~ 414 (726)
+++..|...+..+.
T Consensus 204 ~da~~L~~~l~~g~ 217 (444)
T 3iib_A 204 PDADLINAMLKRDK 217 (444)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999998887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 726 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 1e-33 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 4e-17 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-04 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-13 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 6e-13 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 9e-13 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 8e-06 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 0.002 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 1e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 8e-09 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 6e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-05 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 0.003 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 0.004 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 132 bits (332), Expect = 1e-33
Identities = 92/509 (18%), Positives = 160/509 (31%), Gaps = 110/509 (21%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
N + +ID+G + N + G +
Sbjct: 22 GNRTICIIDSGYDRSHNDLNA-----------------------NNVTGTNNSGTGNWYQ 58
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLG 221
+ HG+H A T + + GV + I KV G + L
Sbjct: 59 PGNNNAHGTHVAGTIAAI-ANNEGVVGVMPN------QNANIHIVKVFNEAGWGYSSSLV 111
Query: 222 AFDDAIADG--VDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTAS 279
A D + +V+T+S+GG + +A++ + + L + +AGN+G +
Sbjct: 112 AAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGV----LLIAAAGNAGDSSYSY 167
Query: 280 VA--PWLMSVAASTTDRLFVDKVALGNGKAISGY--SINSFAMKGRRFPLVYGKEISESC 335
A +MSVAA ++ + ISG +I S G +++
Sbjct: 168 PASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVG-------EGRLADIT 220
Query: 336 QELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPA 395
S N + L + N GA +N +
Sbjct: 221 IGGQSYFSNGVVPHNRLTPSGTSYAPAPIN---ASATGALAECTVNGTSFSCGNM----- 272
Query: 396 VAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAV 455
+ + + + EI T+A
Sbjct: 273 ----------------------------------ANKICLVERVGNQGSSYPEINSTKAC 298
Query: 456 KDFDA-PVVVGFSSRGPNAIVPEIL--KPDISAPGVDILAAF----SPLAQASIDSEDKR 508
K A ++V +S P P ++ DI+ P V + A S ++
Sbjct: 299 KTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQG 358
Query: 509 KPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYG 568
Y +GTSM+ PH +GVA V S+HP+ S S +++A+ TA ++ + + G
Sbjct: 359 NQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR---DNQTG 415
Query: 569 SGHVNPVKAINPGLVYETFKQDYIKMLCN 597
G +N V A Y+ C
Sbjct: 416 YGMINAVAAK-----------AYLDESCT 433
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 83.2 bits (204), Expect = 4e-17
Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 20/185 (10%)
Query: 481 PDISAPGVDILAAFSPLAQASIDSEDKRKP-----KYNIISGTSMSCPHAAGVAAYVKSF 535
+ APGV IL+ + ++ P Y+ GTSM+ PH GV A +
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 536 HPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKML 595
P+ P I+ + TA+ N + G G V A+ L +
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNG---NGWDHDTGYGLVKLDAALQGPLPTQG--------- 445
Query: 596 CNIGYDESKVRIISGDGSACPKGSDKAPPKDLNYPSMAAQVSSGKSFVVNFPRTVTNVGV 655
G +E +V + G+ + +D A G + + ++ V
Sbjct: 446 ---GVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIARFPHIDSGTYDIFV 502
Query: 656 ANSTY 660
+
Sbjct: 503 GGPDH 507
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/199 (14%), Positives = 53/199 (26%), Gaps = 37/199 (18%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
+N+IV V+DTG+ +G G + ++
Sbjct: 154 TNIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAFDEELPA--------GTD 193
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLG 221
+ G+H A T + + G P +I +
Sbjct: 194 SSYGGSAGTHVAGTIAAKKD---------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYV 244
Query: 222 AFDD-------AIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGP 274
D A G V+ S GG ++ A V++ + +
Sbjct: 245 GDDYVAAGIIWATDHGAKVMNHSWGGWG-YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSH 303
Query: 275 GLTASVAPWLMSVAASTTD 293
+ P ++ VAA
Sbjct: 304 HQYPAGYPGVIQVAALDYY 322
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 68.8 bits (167), Expect = 2e-13
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDW 539
+ ++ APG + + + Y ++GTSM+ PH AG AA + S HP+
Sbjct: 194 ELEVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNL 240
Query: 540 SPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
S S +++ + +TA + SS F YG G +N A
Sbjct: 241 SASQVRNRLSSTATYLGSS------FYYGKGLINVEAAA 273
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 67.6 bits (164), Expect = 6e-13
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 486 PGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIK 545
G+DI+A + Y ++GTSM+ PH AG AA VK +P WS I+
Sbjct: 188 AGLDIVAPGVNVQSTYPG------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 546 SAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
+ + TA ++ S+ YGSG VN A
Sbjct: 242 NHLKNTATSLGSTN------LYGSGLVNAEAAT 268
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 67.6 bits (163), Expect = 9e-13
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDW 539
+ISAPG + + + YN ISGTSM+ PH +G+AA + + +P
Sbjct: 224 DIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 540 SPSAIKSAIMTTAWAMNSSKNTEA----EFAYGSGHVN 573
S + ++S + A +++ A ++A G G
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFAR 308
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 65.7 bits (159), Expect = 2e-12
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 480 KPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDW 539
+ D+ APGV I + KY +GTSM+ PH AG AA + S HP+W
Sbjct: 195 ELDVMAPGVSIQSTLP-------------GNKYGAYNGTSMASPHVAGAAALILSKHPNW 241
Query: 540 SPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAI 578
+ + ++S++ T + S F YG G +N A
Sbjct: 242 TNTQVRSSLENTTTKLGDS------FYYGKGLINVQAAA 274
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 46.0 bits (108), Expect = 8e-06
Identities = 38/194 (19%), Positives = 60/194 (30%), Gaps = 36/194 (18%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
SN+ V VID+GI K+ G P+ +
Sbjct: 24 SNVKVAVIDSGIDSSHPDL--------------------------KVAGGASMVPSETNP 57
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFP-GGCDSAGVL 220
+D HG+H A T G PS + A KV G + ++
Sbjct: 58 FQDNNSHGTHVAGT---------VAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWII 108
Query: 221 GAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLTASV 280
+ AIA+ +DVI +S+GG S + A+ + N +
Sbjct: 109 NGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYP 168
Query: 281 APWLMSVAASTTDR 294
+ +A D
Sbjct: 169 GKYPSVIAVGAVDS 182
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 63.7 bits (153), Expect = 1e-11
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 479 LKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPD 538
+KPD+ APG IL+A S LA S KY + GTSM+ P AG A ++
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVK 274
Query: 539 -----WSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAIN 579
PS +K+A++ A + G G V K++N
Sbjct: 275 NRGITPKPSLLKAALIAGAADIGLGYP---NGNQGWGRVTLDKSLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 38.3 bits (87), Expect = 0.002
Identities = 26/158 (16%), Positives = 42/158 (26%), Gaps = 28/158 (17%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
IV V DTG+ S + KI Y +
Sbjct: 22 QGQIVAVADTGLDTGRNDSSM------------------HEAFRGKITA--LYALGRTNN 61
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLG 221
A D GHG+H A + G + G + +
Sbjct: 62 ANDTNGHGTHVAGS--------VLGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQT 113
Query: 222 AFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAM 259
F A + G + T S G ++ D+ ++ +
Sbjct: 114 LFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRK 151
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 516 SGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSK--------NTEAEFAY 567
+GTS S P AAG+ A + + + ++ ++ T+ + + + +Y
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 316
Query: 568 GSGHVNPVKAIN 579
G G ++ +
Sbjct: 317 GYGLLDAGAMVA 328
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 8e-09
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAE------- 564
N GTS + P AAGV + +P+ + ++ + +A + + + +
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 565 --FAYGSGHVNPVKAINPGLVYE 585
YG G ++ K I +E
Sbjct: 317 YSHRYGFGKIDAHKLIEMSKTWE 339
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.4 bits (124), Expect = 6e-08
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 510 PKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGS 569
ISGTSM+ PH AG+AAY+ + + SA + I TA N +
Sbjct: 215 GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTA---NKGDLSN----IPF 266
Query: 570 GHVN 573
G VN
Sbjct: 267 GTVN 270
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 51.1 bits (121), Expect = 2e-07
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
Y +SGTSM+ PH AG+AA + S + I+ AI TA ++ + + G
Sbjct: 219 YAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGTGTY-----FKYGR 271
Query: 572 VNPVKAIN 579
+N A+
Sbjct: 272 INSYNAVT 279
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 43.8 bits (102), Expect = 4e-05
Identities = 41/197 (20%), Positives = 61/197 (30%), Gaps = 41/197 (20%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
S + VIDTG+ K KG ++
Sbjct: 31 SGQEIAVIDTGVDYTHPDLDG-------KVIKGYDFVDNDYDPM---------------- 67
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVL 220
D HG+H A A+ G+ T RI A + G + +
Sbjct: 68 --DLNNHGTHVAGIAAAETNNATGIAGMAPNT--------RILAVRALDRNGSGTLSDIA 117
Query: 221 GAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVL---TLNSAGNSGPGLT 277
A A G +VI +S+G D E+A+ +A KG + + G+S
Sbjct: 118 DAIIYAADSGAEVINLSLGCDCHTTTLENAV----NYAWNKGSVVVAAAGNNGSSTTFEP 173
Query: 278 ASVAPWLMSVAASTTDR 294
AS + A DR
Sbjct: 174 ASYENVIAVGAVDQYDR 190
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 512 YNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGH 571
Y +SGTSM+ PH AGVA + S S S I++AI TA ++ + + G
Sbjct: 218 YASLSGTSMATPHVAGVAGLLAS--QGRSASNIRAAIENTADKISGTGTY-----WAKGR 270
Query: 572 VNPVKAI 578
VN KA+
Sbjct: 271 VNAYKAV 277
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 38.1 bits (87), Expect = 0.003
Identities = 35/219 (15%), Positives = 62/219 (28%), Gaps = 35/219 (15%)
Query: 79 LHTTRSWDFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNG 138
++R + + + S + ++DTG+ G G
Sbjct: 7 YFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDL------------AGKVVG 54
Query: 139 GKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGV 198
G +F N+ P + A G
Sbjct: 55 GWDFVDND---------STPQNGNGHGTHCAGIAA------------AVTNNSTGIAGTA 93
Query: 199 PSGRIAAYKVCF-PGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFH 257
P I A +V G V A G VI++S+GG + A++ A++
Sbjct: 94 PKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNY-AWN 152
Query: 258 AMAKGVLTLNSAGNSGPGLTASVAPWLMSVAASTTDRLF 296
+ V +AGN+ P A + + + D
Sbjct: 153 KGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKS 191
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 37.8 bits (86), Expect = 0.004
Identities = 31/175 (17%), Positives = 50/175 (28%), Gaps = 33/175 (18%)
Query: 102 SNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDT 161
+ +I G + S + A AP
Sbjct: 24 QGQCIAIIALGGGYDETSLAQ--------------------------YFASLGVSAPQVV 57
Query: 162 ARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLG 221
+ +G + +G + + V A P +IA Y +
Sbjct: 58 SVSVDGATNQPTGDPNGPDGEVELDIEVAGALA----PGAKIAVYFAPNTDAGFLNAITT 113
Query: 222 AFDDAIADGVDVITISIGGDSAVDF--SEDAISIGAFHAMAKGVLTLNSAGNSGP 274
A D +++IS GG S A++ A A GV L +AG+SG
Sbjct: 114 AVHDP-THKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGS 167
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 726 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.74 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.45 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.35 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 80.18 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=3.6e-52 Score=483.82 Aligned_cols=354 Identities=23% Similarity=0.274 Sum_probs=262.5
Q ss_pred cEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCHHHHH----HH--HcCCCeEEEEece
Q 041951 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQ----KL--ASMEKVVSVFPSR 75 (726)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~----~L--~~~p~V~~v~~~~ 75 (726)
.+|||.+++... -+++++++ ..++++.+ ..++.+.++++...++ .+ ..+|+|++|+|+.
T Consensus 32 ~~~iV~~k~~~~--------~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~ 96 (671)
T d1r6va_ 32 GKILVGYNDRSE--------VDKIVKAV------NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSY 96 (671)
T ss_dssp TEEEEEESSHHH--------HHHHHHHH------TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCB
T ss_pred CeEEEEECCccC--------HHHHHHhc------CCEEEEEe-cccceEEEEcCchhHHHHHHHHHHhcCCCceEECcce
Confidence 468888874322 33455444 34677777 6677788887653332 22 3579999999986
Q ss_pred eeccccc------------------------------CCcc--ccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCC
Q 041951 76 TLQLHTT------------------------------RSWD--FMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDE 123 (726)
Q Consensus 76 ~~~~~~~------------------------------~s~~--~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~ 123 (726)
..++... ..|. .++++ ++|....+|+||+|||||||||++||+|.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~-~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~ 175 (671)
T d1r6va_ 97 KRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVT-QQLWEEASGTNIIVAVVDTGVDGTHPDLEGQ 175 (671)
T ss_dssp CCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCC-HHHHHHCSCTTCEEEEEESCCBTTSGGGTTT
T ss_pred eEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCcc-HHHHhcCCCCCCEEEEEcCCcCCCChhhcCC
Confidence 5443210 0111 13333 4444456999999999999999999999854
Q ss_pred CCCCCCccccccccCCCcccCCceeEeeeec-CC---CCCCCCCCCcCCcccchhhccccCCCCCccccccccceeeecC
Q 041951 124 GFGPAPKKWKGACNGGKNFTCNNKIIGARYY-TP---APYDTARDEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVP 199 (726)
Q Consensus 124 g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~-~~---~~~~~~~D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP 199 (726)
++..+++ .+ ....++.|..||||||||||+|+.. ..|+ .||||
T Consensus 176 ------------------------~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAGiiaa~~~----~~g~-----~GvAp 222 (671)
T d1r6va_ 176 ------------------------VIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD----GKGI-----VGVAP 222 (671)
T ss_dssp ------------------------BCCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS----SSSC-----CCSCT
T ss_pred ------------------------cccCccccccCCCCCCCcCcccCCCCccccceeeeecc----ccce-----eeecC
Confidence 1111222 11 0123456788999999999999742 1233 89999
Q ss_pred CcEEEEEEeeCC------CC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCC
Q 041951 200 SGRIAAYKVCFP------GG-CDSAGVLGAFDDAIADGVDVITISIGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNS 272 (726)
Q Consensus 200 ~A~L~~~kv~~~------~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~ 272 (726)
+|+|+++|++++ .+ .....+++||+||+++|++|||||||+.. ....+..++..+.++|+++|+||||+
T Consensus 223 ~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~----~~~~~~~ai~~a~~~gv~vV~aAGN~ 298 (671)
T d1r6va_ 223 GAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNN 298 (671)
T ss_dssp TSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred cceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc----CChHHHHHHHHHHhccCcEEEEEecC
Confidence 999999999875 23 56678999999999999999999999872 33566777788999999999999999
Q ss_pred CCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCC
Q 041951 273 GPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVN 349 (726)
Q Consensus 273 g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~ 349 (726)
+.+.. |+..|++|+|||++...
T Consensus 299 ~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------------------------------- 323 (671)
T d1r6va_ 299 TSDSHHQYPAGYPGVIQVAALDYYG------------------------------------------------------- 323 (671)
T ss_dssp SSSCCCCBTTTSTTCEEEEEEEEET-------------------------------------------------------
T ss_pred CCCccccCCccCCceEEEEEecCCC-------------------------------------------------------
Confidence 87665 89999999999864321
Q ss_pred CCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceee
Q 041951 350 GSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFI 429 (726)
Q Consensus 350 ~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 429 (726)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEeCCCcEEeecCCCccCCcC-----c
Q 041951 430 FFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISAPGVDILAAFSPLAQASID-----S 504 (726)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~-----~ 504 (726)
....++.||+|||.+ ||+|||++|+++++........ .
T Consensus 324 -----------------------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~ 366 (671)
T d1r6va_ 324 -----------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENV 366 (671)
T ss_dssp -----------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTC
T ss_pred -----------------------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccc
Confidence 002468999999976 9999999999998753211110 0
Q ss_pred CCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCcccCCCCCCccccCCCCce
Q 041951 505 EDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLV 583 (726)
Q Consensus 505 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~~lv 583 (726)
.....+.|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+. +..||||+||+.+||+..+.
T Consensus 367 ~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~---~~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 367 PATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW---DHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp CCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC---BTTTBTCBCCHHHHHHCCCC
T ss_pred cccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC---CCCcccChhCHHHHhhCcCC
Confidence 11124679999999999999999999999999999999999999999999877653 67899999999999986543
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=5.8e-49 Score=410.82 Aligned_cols=261 Identities=26% Similarity=0.331 Sum_probs=215.1
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
+.++++ ++|+++++|+||+|||||||||++||+|.++ ++..+++.+. ...+.|.
T Consensus 16 ~~i~~~-~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~------------------------~~~~~~~~~~-~~~~~d~ 69 (280)
T d1dbia_ 16 QNTYTD-YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK------------------------VIKGYDFVDN-DYDPMDL 69 (280)
T ss_dssp GGGTHH-HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT------------------------EEEEEETTTT-BSCCCCS
T ss_pred hhCCHH-HHHhccCCCCCeEEEEEccCcCCCChhhcCC------------------------eeecccccCC-CCccccc
Confidence 446666 9999999999999999999999999999843 4455555332 2456788
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAV 244 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~ 244 (726)
.+|||||||+|+|.... ...+.||||+|+|+.+|+++..+ +...++++||++++++|++|||+|||...
T Consensus 70 ~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~-- 139 (280)
T d1dbia_ 70 NNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC-- 139 (280)
T ss_dssp SSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC--
T ss_pred cccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccc--
Confidence 99999999999987532 22348999999999999998766 78899999999999999999999999873
Q ss_pred CCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 245 DFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 245 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
..+....+...+.++|+++|+||||+|.... |+..+++|+|||.+.+
T Consensus 140 --~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 188 (280)
T d1dbia_ 140 --HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY----------------------------- 188 (280)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-----------------------------
T ss_pred --cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC-----------------------------
Confidence 2344555667788999999999999997655 8889999999985322
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+.++.||++||.. |
T Consensus 189 ----------------------------------------------------------~~~a~~S~~g~~~--------d 202 (280)
T d1dbia_ 189 ----------------------------------------------------------DRLASFSNYGTWV--------D 202 (280)
T ss_dssp ----------------------------------------------------------SCBCTTBCCSTTC--------C
T ss_pred ----------------------------------------------------------CCcCCcCCCCCcc--------c
Confidence 4578999999976 9
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCC
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTE 562 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~ 562 (726)
++|||.+|++.... ..|..++|||||||+|||++|||++. .+++.+||++|++||+++...
T Consensus 203 ~~apg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~~---- 263 (280)
T d1dbia_ 203 VVAPGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISGT---- 263 (280)
T ss_dssp EEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTTB----
T ss_pred ccCCccceeccccC-------------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCCC----
Confidence 99999999998875 67999999999999999999999995 568999999999999988754
Q ss_pred CCcccCCCCCCccccCC
Q 041951 563 AEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 563 ~~~~~G~G~in~~~Al~ 579 (726)
+..||+|+||+.+||+
T Consensus 264 -~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 264 -GTYFKYGRINSYNAVT 279 (280)
T ss_dssp -TTTBSSEECCHHHHHT
T ss_pred -CCcCCCCeEcHHHHcC
Confidence 5679999999999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=6.5e-49 Score=409.38 Aligned_cols=259 Identities=30% Similarity=0.482 Sum_probs=217.4
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
++++++ .+|.++++|+||+|||||||||++||+|+ +...++|..+ ...+.|.
T Consensus 9 ~~i~~~-~~~~~g~tG~gv~VaViDtGv~~~Hp~l~--------------------------~~~~~~~~~~-~~~~~d~ 60 (274)
T d1r0re_ 9 PLIKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLN--------------------------VVGGASFVAG-EAYNTDG 60 (274)
T ss_dssp HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCC--------------------------EEEEEECSTT-CCTTCCS
T ss_pred hhcChH-HHHHcCCCCCCeEEEEECCCCCCCChhhc--------------------------ccCCccccCC-CCCCCCc
Confidence 556777 89999999999999999999999999996 2233444221 1345678
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAV 244 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~ 244 (726)
.+|||||||||++.... .|. .|+||+|+|+.+|+++..+ ...+++++|++++.+++++|||+|||....
T Consensus 61 ~gHGT~vAgii~~~~~~----~~~-----~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~~- 130 (274)
T d1r0re_ 61 NGHGTHVAGTVAALDNT----TGV-----LGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG- 130 (274)
T ss_dssp SSHHHHHHHHHHCCSSS----SBC-----CCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSC-
T ss_pred ccccccccccccccccc----ccc-----cccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceeccccccccc-
Confidence 89999999999987421 222 8999999999999998876 678899999999999999999999998832
Q ss_pred CCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCC
Q 041951 245 DFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAM 318 (726)
Q Consensus 245 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (726)
.........++.++++++|+||||+|.... |+..+++|+|||.+.+
T Consensus 131 ---~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------- 182 (274)
T d1r0re_ 131 ---STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN------------------------- 182 (274)
T ss_dssp ---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT-------------------------
T ss_pred ---hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC-------------------------
Confidence 234455566788999999999999987543 7778899999985432
Q ss_pred CCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEe
Q 041951 319 KGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAV 398 (726)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i 398 (726)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCC
Q 041951 399 SQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEI 478 (726)
Q Consensus 399 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 478 (726)
+.++.||++||.
T Consensus 183 --------------------------------------------------------------~~~~~~s~~g~~------ 194 (274)
T d1r0re_ 183 --------------------------------------------------------------SNRASFSSVGAE------ 194 (274)
T ss_dssp --------------------------------------------------------------SCBCTTCCCSTT------
T ss_pred --------------------------------------------------------------CCcccccCCCCC------
Confidence 346889999985
Q ss_pred ccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCC
Q 041951 479 LKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSS 558 (726)
Q Consensus 479 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~ 558 (726)
|||+|||++|+++.+. +.|..++|||||||+|||++|||+|++|+|++.+||++|++||+++..
T Consensus 195 --~di~APG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~- 258 (274)
T d1r0re_ 195 --LEVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS- 258 (274)
T ss_dssp --EEEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSC-
T ss_pred --EEEEecCCCcccccCC-------------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC-
Confidence 4999999999998876 678999999999999999999999999999999999999999988753
Q ss_pred CCCCCCcccCCCCCCccccCC
Q 041951 559 KNTEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 559 ~~~~~~~~~G~G~in~~~Al~ 579 (726)
+..||+|+||+.+||+
T Consensus 259 -----~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 259 -----SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -----HHHHTTCBCCHHHHTC
T ss_pred -----CCceEcCeecHHHhcC
Confidence 6789999999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=9e-49 Score=409.82 Aligned_cols=261 Identities=31% Similarity=0.479 Sum_probs=218.9
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
+.++++ .+|+++++|+||+|||||+|||++||+|+.. ..+++..++.....+.
T Consensus 9 ~~i~a~-~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~--------------------------~~~~~~~~~~~~~~~~ 61 (281)
T d1to2e_ 9 SQIKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA--------------------------GGASMVPSETNPFQDN 61 (281)
T ss_dssp HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCEE--------------------------EEEECCTTCCCTTCCS
T ss_pred HHhCcH-HHHHCCCCCCCeEEEEECCCCCCCChhhhhc--------------------------CCccccCCCCCCCcCc
Confidence 456666 9999999999999999999999999999732 2333322222333456
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAV 244 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~ 244 (726)
.+|||||||||+|.... .+ ..|+||+|+|+.+|++..++ ....++++||+|+++.+++|||+|||...
T Consensus 62 ~~HGT~vAgiiag~~~~----~~-----~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~~-- 130 (281)
T d1to2e_ 62 NSHGTHVAGTVAALNNS----IG-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS-- 130 (281)
T ss_dssp SSHHHHHHHHHHCCSSS----SS-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC--
T ss_pred CCCCceeecccccCCCC----CC-----cceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCCc--
Confidence 79999999999987421 12 38999999999999998776 67788999999999999999999999872
Q ss_pred CCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCC
Q 041951 245 DFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAM 318 (726)
Q Consensus 245 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (726)
....+..+++.+.++|+++|+||||++.... |+..+++|+||+.+.+
T Consensus 131 --~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------- 183 (281)
T d1to2e_ 131 --GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS------------------------- 183 (281)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT-------------------------
T ss_pred --chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC-------------------------
Confidence 3456777778888999999999999987543 7788899999986422
Q ss_pred CCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEe
Q 041951 319 KGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAV 398 (726)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i 398 (726)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCC
Q 041951 399 SQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEI 478 (726)
Q Consensus 399 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 478 (726)
+.++.||++||..
T Consensus 184 --------------------------------------------------------------~~~~~~S~~G~~~----- 196 (281)
T d1to2e_ 184 --------------------------------------------------------------NQRASFSSVGPEL----- 196 (281)
T ss_dssp --------------------------------------------------------------SCBCTTCCCSTTC-----
T ss_pred --------------------------------------------------------------CCCCcccCCCCCc-----
Confidence 3468899999977
Q ss_pred ccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCC
Q 041951 479 LKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSS 558 (726)
Q Consensus 479 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~ 558 (726)
|++|||.+|+++.+. +.|..++|||||||+|||++|||+|++|+|++.+||++|++||+++..
T Consensus 197 ---d~~apG~~i~s~~~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~- 259 (281)
T d1to2e_ 197 ---DVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD- 259 (281)
T ss_dssp ---CEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC-
T ss_pred ---cccCCCCCceeecCC-------------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC-
Confidence 999999999998875 678999999999999999999999999999999999999999998753
Q ss_pred CCCCCCcccCCCCCCccccCCC
Q 041951 559 KNTEAEFAYGSGHVNPVKAINP 580 (726)
Q Consensus 559 ~~~~~~~~~G~G~in~~~Al~~ 580 (726)
+..||+|+||+.+|++.
T Consensus 260 -----~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 260 -----SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp -----HHHHTTCBCCHHHHTSS
T ss_pred -----CCCcccCcccHHHHHhh
Confidence 56799999999999983
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=8.7e-49 Score=435.26 Aligned_cols=401 Identities=23% Similarity=0.287 Sum_probs=234.1
Q ss_pred ccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeec-CCCCCCCCCCC
Q 041951 87 FMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYY-TPAPYDTARDE 165 (726)
Q Consensus 87 ~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~-~~~~~~~~~D~ 165 (726)
.++.+ .+|. .+|+||+|||||||||++||+|.++ ++..+++ ...+...+.|+
T Consensus 10 ~i~a~-~~~~--~~G~gv~VaviDtGid~~Hp~~~~~------------------------~~~~~~~~~~~~~~~~~d~ 62 (435)
T d1v6ca_ 10 FVGAT-VLSD--SQAGNRTICIIDSGYDRSHNDLNAN------------------------NVTGTNNSGTGNWYQPGNN 62 (435)
T ss_dssp HTTGG-GSCC--TTGGGCEEEEEESCCCTTSTTTTTS------------------------EEEECCCTTSCCTTCCCSS
T ss_pred hcCcc-hhhh--cCCCCcEEEEEcCCCCCCChhhccC------------------------eeeeeccCCCCCCCCCCCC
Confidence 45555 5665 4899999999999999999999843 3333444 22334567889
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecC--CcEEEEEEeeCCCC-CChHHHHHHHHHHhh-CCCcEEEEcccCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVP--SGRIAAYKVCFPGG-CDSAGVLGAFDDAIA-DGVDVITISIGGD 241 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP--~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~-~g~dVInlSlG~~ 241 (726)
+||||||||||||+.. ..|+ .|||| +++|+.+|++.... +...++++||++|++ .+++|||+|||..
T Consensus 63 ~gHGThvAgiiag~~~----~~g~-----~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~ 133 (435)
T d1v6ca_ 63 NAHGTHVAGTIAAIAN----NEGV-----VGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGS 133 (435)
T ss_dssp CCHHHHHHHHHHCCCS----SSBC-----CCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBS
T ss_pred CCcHHHHHHHHhccCC----CCce-----EEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCCC
Confidence 9999999999999852 1233 89999 89999999987764 677789999999986 5999999999988
Q ss_pred CCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeE--eeEEeccCC
Q 041951 242 SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAI--SGYSINSFA 317 (726)
Q Consensus 242 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~--~g~~~~~~~ 317 (726)
. ....+..++..+.++|+++|+||||+|.... |+.++++|+||+++.+.....+...+....+ +|..+....
T Consensus 134 ~----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st~ 209 (435)
T d1v6ca_ 134 G----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTV 209 (435)
T ss_dssp C----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEEC
T ss_pred C----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeeee
Confidence 3 2345566777888999999999999998776 8899999999998766533222111111110 111111000
Q ss_pred CC-Cceee-EEEccCCcccc-----cccCCCCcCCC-CCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccce
Q 041951 318 MK-GRRFP-LVYGKEISESC-----QELSSQECNPG-CVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSF 389 (726)
Q Consensus 318 ~~-~~~~~-l~~~~~~~~~~-----~~~~~~~c~~~-~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~ 389 (726)
.. ...+. +.......... .......|... ........+.+..+............. ..+.+........
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-- 286 (435)
T d1v6ca_ 210 TVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMA-NKICLVERVGNQG-- 286 (435)
T ss_dssp STTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCT-TEEEEEECCSCSS--
T ss_pred ecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccc-cccceeeccCCcc--
Confidence 00 00000 00000000000 00000001000 000111222222221100000000000 0001110000000
Q ss_pred eeecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCC
Q 041951 390 VVSLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSR 469 (726)
Q Consensus 390 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~ 469 (726)
..++ ........... .....+..+++.
T Consensus 287 -~~~~-------~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~ 313 (435)
T d1v6ca_ 287 -SSYP-------EINSTKACKTA---------------------------------------------GAKGIIVYSNSA 313 (435)
T ss_dssp -SSCT-------HHHHHHHHHHT---------------------------------------------TCSEEEEECCSS
T ss_pred -ccce-------eeeeceeeccc---------------------------------------------CCcceEEeccCC
Confidence 0000 00000000000 011223444455
Q ss_pred CCCCCC--CCCccCceEeCCCcEEeecCCCccCC----cCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHH
Q 041951 470 GPNAIV--PEILKPDISAPGVDILAAFSPLAQAS----IDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSA 543 (726)
Q Consensus 470 Gp~~~~--~~~~KPDI~APG~~I~sa~~~~~~~~----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ 543 (726)
+|.... .+..||||.+||..|.++........ ..........|..|||||||||||||++|||+|++|+|++++
T Consensus 314 ~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~ 393 (435)
T d1v6ca_ 314 LPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQ 393 (435)
T ss_dssp SCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHH
T ss_pred CCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 554321 24579999999988865432110000 000001125699999999999999999999999999999999
Q ss_pred HHHHHHccccccCCCCCCCCCcccCCCCCCccccCCCCceecCChhhHHHHHhh
Q 041951 544 IKSAIMTTAWAMNSSKNTEAEFAYGSGHVNPVKAINPGLVYETFKQDYIKMLCN 597 (726)
Q Consensus 544 ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~~~~~~~l~~ 597 (726)
||++||+||+++.... .++.||+|+||+.+|+ +||...|.
T Consensus 394 vk~~L~~TA~~~~~~~---~~~~~G~G~vn~~~A~-----------~~l~~~~~ 433 (435)
T d1v6ca_ 394 VRAALNATADDLSVAG---RDNQTGYGMINAVAAK-----------AYLDESCT 433 (435)
T ss_dssp HHHHHHHHSBCCSSSS---CBTTTBTCBCCHHHHH-----------HHHHHCTT
T ss_pred HHHHHHhhCcccCCCC---CCCCcccceecHHHHH-----------HHHHhcCC
Confidence 9999999999986543 3689999999999995 47776664
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=6.6e-48 Score=402.81 Aligned_cols=260 Identities=26% Similarity=0.385 Sum_probs=220.2
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
+.++++ ++|+.+ +|+||+|||||||||++||+|.++ ++..++|.++ ...+.|.
T Consensus 16 ~~i~a~-~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~------------------------~~~~~~~~~~-~~~~~d~ 68 (279)
T d1thma_ 16 QKIQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK------------------------VVGGWDFVDN-DSTPQNG 68 (279)
T ss_dssp HHTTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEETTTT-BSCCCCS
T ss_pred hhCCHH-HHHhcc-CCCCcEEEEEcCCCCCCChhhcCC------------------------eecccccccc-Ccccccc
Confidence 446666 899988 999999999999999999999843 5556666332 2456788
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAV 244 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~ 244 (726)
.+|||||||+|++.... ...+.|+||+|+|+.+|++...+ +...+++++|+++++.+++|+|+|||...
T Consensus 69 ~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~-- 138 (279)
T d1thma_ 69 NGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV-- 138 (279)
T ss_dssp SSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS--
T ss_pred cccccccceeeeeccCC--------CccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc--
Confidence 99999999999987532 22338999999999999998776 78889999999999999999999999883
Q ss_pred CCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 245 DFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 245 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
.......+...+.++|+++|+|+||+|.... +...|++|+|||++.+
T Consensus 139 --~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~----------------------------- 187 (279)
T d1thma_ 139 --GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN----------------------------- 187 (279)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-----------------------------
T ss_pred --cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC-----------------------------
Confidence 2344566667788999999999999998776 8888999999985422
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+.++.||++|++. |
T Consensus 188 ----------------------------------------------------------~~~~~~S~~G~~~--------d 201 (279)
T d1thma_ 188 ----------------------------------------------------------DNKSSFSTYGSWV--------D 201 (279)
T ss_dssp ----------------------------------------------------------SCBCTTCCCCTTC--------C
T ss_pred ----------------------------------------------------------CCCccccCCCceE--------E
Confidence 3578899999987 9
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCC
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTE 562 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~ 562 (726)
|+|||.+|+++.+. +.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++...
T Consensus 202 i~Apg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g~---- 262 (279)
T d1thma_ 202 VAAPGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGT---- 262 (279)
T ss_dssp EEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTTB----
T ss_pred EeeeeeccccccCc-------------ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCCC----
Confidence 99999999998876 6799999999999999999999999655 8999999999999988654
Q ss_pred CCcccCCCCCCccccCC
Q 041951 563 AEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 563 ~~~~~G~G~in~~~Al~ 579 (726)
+..||+|+||+.+||+
T Consensus 263 -~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 263 -GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -TTTBSSEECCHHHHHH
T ss_pred -CCcceeeeEcHHHhhC
Confidence 6789999999999985
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=1.5e-47 Score=397.87 Aligned_cols=258 Identities=30% Similarity=0.437 Sum_probs=216.9
Q ss_pred cccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCC
Q 041951 86 DFMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDE 165 (726)
Q Consensus 86 ~~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~ 165 (726)
+.++++ .+|.++++|+||+||||||||+ +||+|... ..++|..+ ...+.|.
T Consensus 9 ~~i~~~-~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~--------------------------~~~~~~~~-~~~~~d~ 59 (269)
T d1gcia_ 9 SRVQAP-AAHNRGLTGSGVKVAVLDTGIS-THPDLNIR--------------------------GGASFVPG-EPSTQDG 59 (269)
T ss_dssp HHTTHH-HHHHTTCSCTTCEEEEEESCCC-CCTTCCEE--------------------------EEEECSTT-CCSCSCS
T ss_pred hHhCcH-HHHhCCCCCCCeEEEEECCCCC-CCcccCcc--------------------------ccccccCC-CCCcccc
Confidence 346677 9999999999999999999998 89999621 23334221 2456688
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhCCCcEEEEcccCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIADGVDVITISIGGDSAV 244 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~ 244 (726)
.+|||||||||++... .....|+||+|+|+.+|++...+ .....+.++++++...++++||+|||...
T Consensus 60 ~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~-- 128 (269)
T d1gcia_ 60 NGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-- 128 (269)
T ss_dssp SSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS--
T ss_pred chhhheecccccccCC---------CccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc--
Confidence 9999999999998742 12237999999999999998776 67778999999999999999999999872
Q ss_pred CCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC--CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCce
Q 041951 245 DFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT--ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRR 322 (726)
Q Consensus 245 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (726)
.......+...+.++|+++|+||||+|.... |+..|++|+||+++.+
T Consensus 129 --~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 177 (269)
T d1gcia_ 129 --PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN----------------------------- 177 (269)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-----------------------------
T ss_pred --ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC-----------------------------
Confidence 2234455667788999999999999997655 8899999999985422
Q ss_pred eeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhh
Q 041951 323 FPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDS 402 (726)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 402 (726)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCc
Q 041951 403 LSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPD 482 (726)
Q Consensus 403 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 482 (726)
+.++.||++||.. |
T Consensus 178 ----------------------------------------------------------~~~~~~S~~G~~~--------d 191 (269)
T d1gcia_ 178 ----------------------------------------------------------NNRASFSQYGAGL--------D 191 (269)
T ss_dssp ----------------------------------------------------------SCBCTTCCCSTTE--------E
T ss_pred ----------------------------------------------------------CCcccccCCCCCc--------e
Confidence 3468899999976 9
Q ss_pred eEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCC
Q 041951 483 ISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTE 562 (726)
Q Consensus 483 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~ 562 (726)
|+|||.++.++... ..|..++|||||||+|||++|||+|++|+|++++||++|++||+++..
T Consensus 192 i~Apg~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~----- 253 (269)
T d1gcia_ 192 IVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS----- 253 (269)
T ss_dssp EEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC-----
T ss_pred EEEeeecceeccCC-------------CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC-----
Confidence 99999999998876 679999999999999999999999999999999999999999998753
Q ss_pred CCcccCCCCCCccccCC
Q 041951 563 AEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 563 ~~~~~G~G~in~~~Al~ 579 (726)
+..||+|+||+++|++
T Consensus 254 -~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 254 -TNLYGSGLVNAEAATR 269 (269)
T ss_dssp -HHHHTTCBCCHHHHTC
T ss_pred -CCCcccCeEcHHHhcC
Confidence 5679999999999986
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=3.9e-43 Score=371.47 Aligned_cols=281 Identities=26% Similarity=0.331 Sum_probs=214.7
Q ss_pred ccCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC---CCCCCC
Q 041951 87 FMGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA---PYDTAR 163 (726)
Q Consensus 87 ~~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~---~~~~~~ 163 (726)
.++++ .+|..+++|+||+|||||||||++||+|.+. +...++|.+. ......
T Consensus 12 ~i~~~-~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 66 (309)
T d2ixta1 12 AIYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN------------------------VEQCKDFTGATTPINNSCT 66 (309)
T ss_dssp HHHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT------------------------EEEEEESSSSSSCEETCCC
T ss_pred hcCCh-hhhccCCCCCCeEEEEEccCCCCCChhHhcc------------------------ccccccccCCCCCCCCCcc
Confidence 35556 8999999999999999999999999999843 4444555322 124556
Q ss_pred CCcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhC-----CCcEEEEc
Q 041951 164 DEEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIAD-----GVDVITIS 237 (726)
Q Consensus 164 D~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~-----g~dVInlS 237 (726)
|..+|||||||||+|.... +..| +.||||+|+|+.++++...+ +...+++.+++++++. ...|+|+|
T Consensus 67 d~~gHGT~VAgiiaa~~~~--~~~~-----~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s 139 (309)
T d2ixta1 67 DRNGHGTHVAGTALADGGS--DQAG-----IYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMS 139 (309)
T ss_dssp CSSSHHHHHHHHHHCBCCT--TSCS-----CBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred ccccccccccccccccccc--cchh-----hhhhhhhccceeeeeecCCCCccccccccccccccccccccccccccccc
Confidence 7889999999999987532 2222 38999999999999988766 7788899999998764 34789999
Q ss_pred ccCCCCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEe
Q 041951 238 IGGDSAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSI 313 (726)
Q Consensus 238 lG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (726)
++... .......++..+.++|+++|+||||++.... |+..+++++|++..........
T Consensus 140 ~~~~~----~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~-------------- 201 (309)
T d2ixta1 140 LGSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY-------------- 201 (309)
T ss_dssp CCBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE--------------
T ss_pred ccccc----cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc--------------
Confidence 98872 2344555667788999999999999987654 6777888888865322100000
Q ss_pred ccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeec
Q 041951 314 NSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSL 393 (726)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~ 393 (726)
T Consensus 202 -------------------------------------------------------------------------------- 201 (309)
T d2ixta1 202 -------------------------------------------------------------------------------- 201 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCC
Q 041951 394 PAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNA 473 (726)
Q Consensus 394 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~ 473 (726)
..........++++|+..
T Consensus 202 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 219 (309)
T d2ixta1 202 --------------------------------------------------------------RVADYSSRGYISTAGDYV 219 (309)
T ss_dssp --------------------------------------------------------------EECTTSCCCCTTTTTSSS
T ss_pred --------------------------------------------------------------cccccccccccccccccc
Confidence 000012234567777765
Q ss_pred CCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 041951 474 IVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 553 (726)
Q Consensus 474 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~ 553 (726)
....||||+|||.+++++... ..|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 220 --~~~~~vdi~apG~~~~s~~~~-------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~ 284 (309)
T d2ixta1 220 --IQEGDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAK 284 (309)
T ss_dssp --CCTTCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred --cCCCcceeecCCCceeeecCC-------------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCc
Confidence 566799999999999998875 67999999999999999999999999999999999999999999
Q ss_pred ccCCCCCC----CCCcccCCCCCCc
Q 041951 554 AMNSSKNT----EAEFAYGSGHVNP 574 (726)
Q Consensus 554 ~~~~~~~~----~~~~~~G~G~in~ 574 (726)
+++..+.. ..++.+|+|++|+
T Consensus 285 ~~~~~~~~g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 285 SVDIKGGYGAAIGDDYASGFGFARV 309 (309)
T ss_dssp TSCCCBSTTCCSSSBTTTBTCBCCC
T ss_pred cCCCCCCcCCccCCCcccCCCEecC
Confidence 88754321 1567889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=2e-42 Score=361.02 Aligned_cols=235 Identities=30% Similarity=0.369 Sum_probs=193.6
Q ss_pred cCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccchhhc
Q 041951 97 KRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHTASTA 176 (726)
Q Consensus 97 ~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThVAGia 176 (726)
...+|+||+|||||+|||++||+|.++ +.....+ ...+.|.++|||||||||
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~------------------------~~~~~~~----~~~~~d~~gHGT~VAgii 77 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR------------------------AQMVKTY----YYSSRDGNGHGTHCAGTV 77 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC------------------------EEEEEES----SSCSSCSSSHHHHHHHHH
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC------------------------ceeccCC----CCCcccccCccccccccc
Confidence 455999999999999999999999853 1111222 124567889999999999
Q ss_pred cccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhhC-------CCcEEEEcccCCCCCCCcc
Q 041951 177 SGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIAD-------GVDVITISIGGDSAVDFSE 248 (726)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~~-------g~dVInlSlG~~~~~~~~~ 248 (726)
+|+. .|+||+|+|+.+|++.... ...+.+..+++++... +++|+|+|||.. ..
T Consensus 78 a~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~-----~~ 138 (279)
T d2pwaa1 78 GSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-----YS 138 (279)
T ss_dssp HCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-----CC
T ss_pred cccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc-----cc
Confidence 9873 6889999999999987765 6777888999988754 356999999987 33
Q ss_pred cHHHHHHHHhhhCCcEEEEccCCCCCCCC---CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCCCCCceeeE
Q 041951 249 DAISIGAFHAMAKGVLTLNSAGNSGPGLT---ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFAMKGRRFPL 325 (726)
Q Consensus 249 ~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l 325 (726)
+.+..++.++.++|+++|+||||++.... |...|++|+|||++.+
T Consensus 139 ~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~-------------------------------- 186 (279)
T d2pwaa1 139 SSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY-------------------------------- 186 (279)
T ss_dssp HHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------------------------
T ss_pred cccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec--------------------------------
Confidence 56677778888999999999999997765 8889999999986422
Q ss_pred EEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEEeehhhHHH
Q 041951 326 VYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVAVSQDSLSS 405 (726)
Q Consensus 326 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~ 405 (726)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCCCccCceEe
Q 041951 406 LISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPEILKPDISA 485 (726)
Q Consensus 406 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A 485 (726)
+.++.||++||.. ||+|
T Consensus 187 -------------------------------------------------------g~~~~~S~~G~~~--------dv~A 203 (279)
T d2pwaa1 187 -------------------------------------------------------DRRSSFSNYGSVL--------DIFG 203 (279)
T ss_dssp -------------------------------------------------------SBBCTTCCBSTTC--------CEEE
T ss_pred -------------------------------------------------------CCCccccCCCCcc--------cccc
Confidence 4568999999976 9999
Q ss_pred CCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccCCCCCCCCCc
Q 041951 486 PGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWAMNSSKNTEAEF 565 (726)
Q Consensus 486 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~TA~~~~~~~~~~~~~ 565 (726)
||.+|+++.+. +.|..++|||||||+|||++|||+|++|.++++++|. |++||++.. ..
T Consensus 204 PG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~-------~~ 262 (279)
T d2pwaa1 204 PGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD-------LS 262 (279)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC-------CB
T ss_pred ccccccccccC-------------CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC-------CC
Confidence 99999999876 6799999999999999999999999999999888775 677887643 34
Q ss_pred ccCCCCCCc
Q 041951 566 AYGSGHVNP 574 (726)
Q Consensus 566 ~~G~G~in~ 574 (726)
..|+|++|+
T Consensus 263 ~~g~g~~n~ 271 (279)
T d2pwaa1 263 NIPFGTVNL 271 (279)
T ss_dssp SCCTTSCCE
T ss_pred CCCCCChhh
Confidence 689999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=7.7e-42 Score=362.84 Aligned_cols=299 Identities=26% Similarity=0.276 Sum_probs=223.0
Q ss_pred cccCCCcccccc-CCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCC
Q 041951 86 DFMGLNLSITRK-RSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARD 164 (726)
Q Consensus 86 ~~~g~~~~~~~~-~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D 164 (726)
++++++ .+|.. |++|+||+|||||||||++||+|.... . ...++...+.+.. .....|
T Consensus 6 ~~~~~~-~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~------------~~~~~~~~~~~~~--~~~~~d 64 (318)
T d1wmda2 6 GIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------A------------FRGKITALYALGR--TNNAND 64 (318)
T ss_dssp HHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------T------------TTTCEEEEEETTT--TTCCCC
T ss_pred cccCch-hHHHccCccccCeEEEEEcCCcCCCCcccccCc------c------------cCCcEEeecCCCC--CCCCCC
Confidence 467777 88886 999999999999999999999997431 0 1234444444422 245668
Q ss_pred CcCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC---CChHHHHHHHHHHhhCCCcEEEEcccCC
Q 041951 165 EEGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG---CDSAGVLGAFDDAIADGVDVITISIGGD 241 (726)
Q Consensus 165 ~~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~A~~~g~dVInlSlG~~ 241 (726)
..||||||||||+|+... ..||||+|+|+.+|+++..+ .....+..+++++...+++|+|+|||..
T Consensus 65 ~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~ 133 (318)
T d1wmda2 65 TNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAA 133 (318)
T ss_dssp SSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBC
T ss_pred CCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecccccc
Confidence 899999999999987421 27999999999999998765 3445578899999999999999999987
Q ss_pred CCCCCcccHHHHHHHHhhhCCcEEEEccCCCCCCCC----CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEEeccCC
Q 041951 242 SAVDFSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYSINSFA 317 (726)
Q Consensus 242 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (726)
.. .........+...+.++++++|+|+||.|.... +...++++++.+........
T Consensus 134 ~~-~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------- 192 (318)
T d1wmda2 134 VN-GAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF-------------------- 192 (318)
T ss_dssp CT-TCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG--------------------
T ss_pred cc-cccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc--------------------
Confidence 42 333444555556677999999999999987765 45566677666543211000
Q ss_pred CCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeeecCEEE
Q 041951 318 MKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVSLPAVA 397 (726)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~~p~~~ 397 (726)
T Consensus 193 -------------------------------------------------------------------------------- 192 (318)
T d1wmda2 193 -------------------------------------------------------------------------------- 192 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCCCCCCC
Q 041951 398 VSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPNAIVPE 477 (726)
Q Consensus 398 i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 477 (726)
.........+..+|++||.. ..
T Consensus 193 --------------------------------------------------------~~~~~~~~~~~~~s~~G~~~--~~ 214 (318)
T d1wmda2 193 --------------------------------------------------------GSYADNINHVAQFSSRGPTK--DG 214 (318)
T ss_dssp --------------------------------------------------------CGGGSCTTSBCTTSCCCCCT--TS
T ss_pred --------------------------------------------------------ccccccccccccccccCCCc--CC
Confidence 00001123567889999987 77
Q ss_pred CccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcC-----CCCCHHHHHHHHHccc
Q 041951 478 ILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFH-----PDWSPSAIKSAIMTTA 552 (726)
Q Consensus 478 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P~ls~~~ik~~L~~TA 552 (726)
..|||+.|||.+|+++.......... .......|..++|||||||+|||++|||+|++ +.+++.+||++|++||
T Consensus 215 ~~~~~~~a~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA 293 (318)
T d1wmda2 215 RIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293 (318)
T ss_dssp CCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHC
T ss_pred CcccceeecCceEEeccccccccCcc-ccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhC
Confidence 89999999999999988764322111 11112568889999999999999999999965 4688999999999999
Q ss_pred cccCCCCCCCCCcccCCCCCCccccCC
Q 041951 553 WAMNSSKNTEAEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 553 ~~~~~~~~~~~~~~~G~G~in~~~Al~ 579 (726)
+++.... .+..||||+||+.+||+
T Consensus 294 ~~~~~~~---~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 294 ADIGLGY---PNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp BCCSSCS---SCTTTTTCBCCHHHHHT
T ss_pred ccCCCCC---CCCCeeeceecHHHHhC
Confidence 9886653 25789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-38 Score=338.93 Aligned_cols=277 Identities=15% Similarity=0.177 Sum_probs=187.0
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEG 167 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~g 167 (726)
++++ ++|.++.+|+||+|||||||||++||+|.++- ..+.+|.+++.. ....+.....|..+
T Consensus 24 in~~-~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~------------~~~~~~~~~~~~-----~~~~~~~~~~~~~g 85 (334)
T d1p8ja2 24 LNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------DPGASFDVNDQD-----PDPQPRYTQMNDNR 85 (334)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------CGGGCEETTTTB-----SCCCCCCCTTCTTC
T ss_pred CCHH-HHHhcCCCCCCeEEEEEccCCCCCChhHhhcc------------ccCCCccccCCC-----CccccccccccCcc
Confidence 4555 89999999999999999999999999998531 011111100000 00011234457889
Q ss_pred CcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhh-CCCcEEEEcccCCCCCCC
Q 041951 168 HGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIA-DGVDVITISIGGDSAVDF 246 (726)
Q Consensus 168 HGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~-~g~dVInlSlG~~~~~~~ 246 (726)
|||||||||+|.... ..+. .|+||+++++.+|+... ...+.+.++.++++ .+++++|+|||.......
T Consensus 86 HGT~vAgiia~~~~n---~~~~-----~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~~ 154 (334)
T d1p8ja2 86 HGTRCAGEVAAVANN---GVCG-----VGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKT 154 (334)
T ss_dssp HHHHHHHHHHCCSSS---SSSC-----CCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSC
T ss_pred chhhhhhhhhhcccc---cccc-----ccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEeCCCCCCCcCcc
Confidence 999999999988532 2222 78999999999999753 34456677777775 689999999997642222
Q ss_pred cc--------cHHHHHHHHhhhCCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeEE
Q 041951 247 SE--------DAISIGAFHAMAKGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGYS 312 (726)
Q Consensus 247 ~~--------~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 312 (726)
.. ..+..+...+..+|+++|+||||++.... ....+.+++|++....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------- 215 (334)
T d1p8ja2 155 VDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF------------------- 215 (334)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT-------------------
T ss_pred cCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccccC-------------------
Confidence 11 11223334456789999999999876543 2233445555543221
Q ss_pred eccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceeee
Q 041951 313 INSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVVS 392 (726)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~~ 392 (726)
T Consensus 216 -------------------------------------------------------------------------------- 215 (334)
T d1p8ja2 216 -------------------------------------------------------------------------------- 215 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCCC
Q 041951 393 LPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGPN 472 (726)
Q Consensus 393 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~ 472 (726)
+..+.||++|+.
T Consensus 216 --------------------------------------------------------------------g~~~~~s~~~~~ 227 (334)
T d1p8ja2 216 --------------------------------------------------------------------GNVPWYSEACSS 227 (334)
T ss_dssp --------------------------------------------------------------------SCCCTTCCBCTT
T ss_pred --------------------------------------------------------------------CceeeecccCCc
Confidence 233445555544
Q ss_pred CCCCCCccCceEeCCCc-----EEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 041951 473 AIVPEILKPDISAPGVD-----ILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSA 547 (726)
Q Consensus 473 ~~~~~~~KPDI~APG~~-----I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~ 547 (726)
. ..+..+||.. +.+... ...|..++|||||||+|||++|||+|++|+|++.|||++
T Consensus 228 ~------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~ 288 (334)
T d1p8ja2 228 T------LATTYSSGNQNEKQIVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 288 (334)
T ss_dssp C------CEEEECCCSTTSCCEEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred c------ccccccccccccccccccccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3 1133333322 222221 256889999999999999999999999999999999999
Q ss_pred HHccccccCCCCCCC--------CCcccCCCCCCccccCC
Q 041951 548 IMTTAWAMNSSKNTE--------AEFAYGSGHVNPVKAIN 579 (726)
Q Consensus 548 L~~TA~~~~~~~~~~--------~~~~~G~G~in~~~Al~ 579 (726)
|++||++........ .+..||+|+||+.+||+
T Consensus 289 L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 289 VVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp HHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHH
T ss_pred HHHhCcccCCCCccccccCCCcccCCCCcceEeCHHHHHH
Confidence 999999875432111 24578999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-38 Score=338.91 Aligned_cols=277 Identities=15% Similarity=0.160 Sum_probs=198.2
Q ss_pred cCCCccccccCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCC--CCCCCCCC
Q 041951 88 MGLNLSITRKRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPA--PYDTARDE 165 (726)
Q Consensus 88 ~g~~~~~~~~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~--~~~~~~D~ 165 (726)
+++. ++|.++++|+||+|||||||||++||+|.++-.. .+.++|.++ ......+.
T Consensus 33 in~~-~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 89 (339)
T d2id4a2 33 INVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA----------------------EGSWDFNDNTNLPKPRLSD 89 (339)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG----------------------GGCEETTTTBSCCCCCSTT
T ss_pred cCHH-HHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc----------------------ccccccccCCCccCCCccc
Confidence 5555 8999999999999999999999999999853100 012233211 12345567
Q ss_pred cCCcccchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHhhCCCcEEEEcccCCCCCC
Q 041951 166 EGHGSHTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAIADGVDVITISIGGDSAVD 245 (726)
Q Consensus 166 ~gHGThVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~~~g~dVInlSlG~~~~~~ 245 (726)
.+|||||||+|+|....+ .+ ..|+||+|+|+.+++... .....++..++.++++. .+|+|+|+|......
T Consensus 90 ~~HGT~vag~iaa~~~~~---~~-----~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~ 159 (339)
T d2id4a2 90 DYHGTRCAGEIAAKKGNN---FC-----GVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCSWGPADDGR 159 (339)
T ss_dssp TTHHHHHHHHHHCCSSSS---SS-----CCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEECEESCCSSS
T ss_pred ccccceeeeccccccccc---cc-----ccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEeccCCCCCCcc
Confidence 899999999999875322 22 389999999999999753 25677788888887766 589999999753111
Q ss_pred Cc-------ccHH-HHHHHHhhhCCcEEEEccCCCCCCCC------CCCCCceEEEecccCCceeeeEEEeCCCeeEeeE
Q 041951 246 FS-------EDAI-SIGAFHAMAKGVLTLNSAGNSGPGLT------ASVAPWLMSVAASTTDRLFVDKVALGNGKAISGY 311 (726)
Q Consensus 246 ~~-------~~~~-~~a~~~a~~~Gv~vV~AAGN~g~~~~------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 311 (726)
.. ...+ ..+...+..+|+++|+||||.+.... ....+.+++|++++.
T Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 220 (339)
T d2id4a2 160 HLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH------------------- 220 (339)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT-------------------
T ss_pred cccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccccc-------------------
Confidence 11 1112 23334455789999999999875442 122233444433221
Q ss_pred EeccCCCCCceeeEEEccCCcccccccCCCCcCCCCCCCCcccccEEEEeeccchHHHHhcCceEEEEeccCCCccceee
Q 041951 312 SINSFAMKGRRFPLVYGKEISESCQELSSQECNPGCVNGSLVKGKIVICQSFKNYPEVRKAGAAGTVLLNNEFDKVSFVV 391 (726)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G~~g~i~~~~~~~~~~~~~ 391 (726)
T Consensus 221 -------------------------------------------------------------------------------- 220 (339)
T d2id4a2 221 -------------------------------------------------------------------------------- 220 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCEEEeehhhHHHHHHHHhcCchhhhhhhhhhhceeehhheehhccccccCCCeEEEecceeecCCCCCeeecccCCCC
Q 041951 392 SLPAVAVSQDSLSSLISYKESTKYIFYILRKMLLFHFIFFQKIIHSLYLDYRTPVAEILKTEAVKDFDAPVVVGFSSRGP 471 (726)
Q Consensus 392 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp 471 (726)
.+..+.+|+.|+
T Consensus 221 --------------------------------------------------------------------~g~~~~~s~~~~ 232 (339)
T d2id4a2 221 --------------------------------------------------------------------KDLHPPYSEGCS 232 (339)
T ss_dssp --------------------------------------------------------------------TSCCCTTCCCCT
T ss_pred --------------------------------------------------------------------cccccccccccC
Confidence 134566667666
Q ss_pred CCCCCCCccCceEeCCCcEEeecCCCccCCcCcCCCCCCcceeeccccchhHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 041951 472 NAIVPEILKPDISAPGVDILAAFSPLAQASIDSEDKRKPKYNIISGTSMSCPHAAGVAAYVKSFHPDWSPSAIKSAIMTT 551 (726)
Q Consensus 472 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~ik~~L~~T 551 (726)
.. ...++..+||..+.+..... ..|..++|||||||||||++|||+|++|+|++.|||.+|+.|
T Consensus 233 ~~----~~~~~~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~t 296 (339)
T d2id4a2 233 AV----MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILS 296 (339)
T ss_dssp TE----EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred cc----ceeeeeeccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 43 34567888999988766542 568899999999999999999999999999999999999999
Q ss_pred ccccCCCCCC---------CCCcccCCCCCCccccCCC
Q 041951 552 AWAMNSSKNT---------EAEFAYGSGHVNPVKAINP 580 (726)
Q Consensus 552 A~~~~~~~~~---------~~~~~~G~G~in~~~Al~~ 580 (726)
|++++..... ..+..||||+||+.+||+.
T Consensus 297 A~~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 297 AVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp CBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred CcccCCCCCccccccCCCCCcCCCccchhhCHHHHHHH
Confidence 9987654211 1245799999999999984
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=2.4e-31 Score=285.62 Aligned_cols=165 Identities=21% Similarity=0.284 Sum_probs=109.3
Q ss_pred cccc--cCCCCCCcEEEEEeccCCCCCCCCCCCCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcc
Q 041951 93 SITR--KRSVESNLIVGVIDTGIWPESESFSDEGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGS 170 (726)
Q Consensus 93 ~~~~--~~~~G~GVvVaVIDtGid~~Hp~f~d~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGT 170 (726)
++|+ ++++|+||+|||||+|||++||+|.+. |+.. + +. .....+.|..+|+|
T Consensus 13 ~~y~~~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~---~--------------~~-~~~~~~~~~~g~~~ 66 (357)
T d1t1ga_ 13 QAYQFPEGLDGQGQCIAIIALGGGYDETSLAQY--------FASL---G--------------VS-APQVVSVSVDGATN 66 (357)
T ss_dssp HHTTCCTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT---T--------------CC-CCCEEEEESTTCCC
T ss_pred HHHCCCCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc---C--------------CC-CCCCceeCCCCCCC
Confidence 4444 689999999999999999999999731 1000 0 00 00112335678999
Q ss_pred cchhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCCCChHHHHHHHHHHh---hCCCcEEEEcccCCCCC--C
Q 041951 171 HTASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGGCDSAGVLGAFDDAI---ADGVDVITISIGGDSAV--D 245 (726)
Q Consensus 171 hVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~A~---~~g~dVInlSlG~~~~~--~ 245 (726)
|+++++++...+.. .....+.||||+|+|+.+|+... ...++.++++++ +.+++|||+|||..... .
T Consensus 67 ~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~ 138 (357)
T d1t1ga_ 67 QPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAP 138 (357)
T ss_dssp CCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCH
T ss_pred CCCCcccccccccc----CCcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecccccCcCcccc
Confidence 99988875431100 01112489999999999999743 334455555554 56899999999986311 1
Q ss_pred CcccHHHHHHHHhhhCCcEEEEccCCCCCCCC----------CCCCCceEEEeccc
Q 041951 246 FSEDAISIGAFHAMAKGVLTLNSAGNSGPGLT----------ASVAPWLMSVAAST 291 (726)
Q Consensus 246 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----------~~~~p~vitVga~~ 291 (726)
.....+......+..+|+++|+|+||+|.... +...+++++|++..
T Consensus 139 ~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (357)
T d1t1ga_ 139 ASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR 194 (357)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred chHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence 11233555556677899999999999985433 55667888887653
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=3.2e-29 Score=271.01 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=114.2
Q ss_pred CCCCCCcEEEEEeccCCCC-CCCCCC----CCCCCCCccccccccCCCcccCCceeEeeeecCCCCCCCCCCCcCCcccc
Q 041951 98 RSVESNLIVGVIDTGIWPE-SESFSD----EGFGPAPKKWKGACNGGKNFTCNNKIIGARYYTPAPYDTARDEEGHGSHT 172 (726)
Q Consensus 98 ~~~G~GVvVaVIDtGid~~-Hp~f~d----~g~~~~~~~w~g~~~~g~~f~~n~k~ig~~~~~~~~~~~~~D~~gHGThV 172 (726)
..+|+||+|||||+|.++. |+||.. .++.. ++. .. .....+..+||||+
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~----------------~~~-----~~-----~~~~~~~~~~~~~~ 74 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQFTSANGLAS----------------VNT-----QT-----IQTGSSNGDYSDDQ 74 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCC----------------CCE-----EE-----EECSCTTSCCCBCH
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHHHHHhcCCCC----------------CCC-----Ce-----ecCCCCCCCCCCCC
Confidence 4589999999999998764 666651 01000 000 00 01223467899999
Q ss_pred hhhccccCCCCCccccccccceeeecCCcEEEEEEeeCCCC-CChHHHHHHHHHHhh-CCCcEEEEcccCCCC---CCCc
Q 041951 173 ASTASGNEVKDASFYGVGQGTARGGVPSGRIAAYKVCFPGG-CDSAGVLGAFDDAIA-DGVDVITISIGGDSA---VDFS 247 (726)
Q Consensus 173 AGiaag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~A~~-~g~dVInlSlG~~~~---~~~~ 247 (726)
++++.+... .....||||+|+|++++++.+.+ ....+++++|++|++ .+++|||+|||.... ....
T Consensus 75 ~~~~e~~ld---------~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~ 145 (369)
T d1ga6a_ 75 QGQGEWDLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGT 145 (369)
T ss_dssp HHHHHHHHH---------HHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTH
T ss_pred Ccceeeccc---------cccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchH
Confidence 999876521 11238999999999999988766 677889999999986 579999999997521 1233
Q ss_pred ccHHHHHHHHhhhCCcEEEEccCCCCCCCC---------------CCCCCceEEEeccc
Q 041951 248 EDAISIGAFHAMAKGVLTLNSAGNSGPGLT---------------ASVAPWLMSVAAST 291 (726)
Q Consensus 248 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---------------~~~~p~vitVga~~ 291 (726)
.+.+..++.++..+|++||+||||+|.... |+..+++++|+++.
T Consensus 146 ~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 146 LQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 455666777888999999999999986432 56678899998754
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.74 E-value=1.8e-08 Score=79.53 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=57.2
Q ss_pred CcEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEeccceeEEEEEeCHHHHHHHHcCCCeEEEEeceeecc
Q 041951 1 MQVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYRRSFNGFAAKLTVDERQKLASMEKVVSVFPSRTLQL 79 (726)
Q Consensus 1 ~~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~ 79 (726)
+++|||.|++... ......+.+++++. +.+|.+.|+ .||||+++|++++++.|+++|+|.+||+++.++.
T Consensus 1 e~~YIV~fK~~~~--~~~~~~~~~~v~~~------gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 1 EKKYIVGFKQTMS--AMSSAKKKDVISQK------GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp CEEEEEEECSSSS--CCSHHHHHHHHHTT------TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred CCcEEEEECCCCC--hHHHHHHHHHHHHc------CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 4789999998865 33444455555443 568999995 7999999999999999999999999999988753
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.45 E-value=2.2e-07 Score=73.41 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=51.5
Q ss_pred cEEEEEeCCCCCCCCcchhhHHHHHHHHhcCCCCccceEEEec-cceeEEEEEeCHHHHHHHHcCCC--eEEEEece
Q 041951 2 QVYIVYMGSLPEGEYVTSSQHQNILQEVVVGRSVEDILVRSYR-RSFNGFAAKLTVDERQKLASMEK--VVSVFPSR 75 (726)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~y~-~~~~g~s~~l~~~~~~~L~~~p~--V~~v~~~~ 75 (726)
..|||.|++... ....+.|..+++... .++.+.|. ..|+||+++++++.++.|+++|+ |.+||++.
T Consensus 3 G~YIVvlK~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 3 GKFIVIFKNDVS--EDKIRETKDEVIAEG------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp EEEEEEECTTCC--HHHHHHHHHHHHHHT------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred ccEEEEECCCCC--HHHHHHHHHHHHhcC------CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 479999998765 333344555555543 36778887 79999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.35 E-value=0.024 Score=46.80 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=58.4
Q ss_pred CCCCcEEEeecCCCceEEEEEEEEEEcCCCCee-EEEEEecCCceEEEEEcCEEEEeeCCcEEEEEEEEEeecCCCCCeE
Q 041951 627 LNYPSMAAQVSSGKSFVVNFPRTVTNVGVANST-YRAKVLQNSKISIKVVPDVLSFKSLNEKKSFSVTVTGKGVPQGAIV 705 (726)
Q Consensus 627 ln~ps~~~~~~~~~~~~~~~~rtv~n~g~~~~t-y~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~ 705 (726)
|..|++.+... ...+++.+|+|.|....+ -++.+..|+|=+++ |....+ ++|++++++++|+++.....+.|
T Consensus 6 ~t~p~~~v~pG----~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y 78 (103)
T d1w8oa1 6 FTIPDVALEPG----QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGRY 78 (103)
T ss_dssp EECCCEEECTT----CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEEE
T ss_pred ccCcceeeCCC----CeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCCCCceE
Confidence 34467766543 378899999999987654 56778899997765 555567 89999999999999764333333
Q ss_pred EEEEEEEcCCee
Q 041951 706 SASLVWSDGNHW 717 (726)
Q Consensus 706 ~G~~~~~~~~~~ 717 (726)
.=.+..+++...
T Consensus 79 ~i~~~a~~~~~~ 90 (103)
T d1w8oa1 79 RVGATLRTSAGN 90 (103)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEEeCCcc
Confidence 334555554433
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.18 E-value=0.45 Score=43.29 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=30.1
Q ss_pred CcccccEEEEee-----ccchHHHHhcCceEEEEeccCC
Q 041951 351 SLVKGKIVICQS-----FKNYPEVRKAGAAGTVLLNNEF 384 (726)
Q Consensus 351 ~~~~gkiv~~~~-----~~~~~~~~~~G~~g~i~~~~~~ 384 (726)
.+++|||+++++ .+|..+++..||.|+|||.+..
T Consensus 59 ~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~ 97 (193)
T d1de4c2 59 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQT 97 (193)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTT
T ss_pred cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCcc
Confidence 468999999986 6889999999999999998754
|