Citrus Sinensis ID: 041973

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
MAAKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCLYEG
cHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccccccccccEEEEEEEEEEEEEEccEEEcccccccccccccccccccccEEEEEEEccEEEEcEEEEccccEEEEEEcEEEEEEEEEEEEcccccccccEEEccccccEEEEccEEEccccEEEEccccEEEEEEEEEEccccccEEEEcccccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEccccccccccccEEEEEEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEcccccccEEEEEEEEEEccccccccccccc
cHHHHHHHHHHHHHHHccccccccEEEEHHcccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEccccccccEHcccccccccccccHHHHHcc
MAAKLLISCILSLFltfffkpsnaayNVIDlgaksdgetdSTQAFLKAWAAACSSVKastiyvptgryliknivfrgpcknkiaiqikgtivaptdyhvigktgnWILFVQVDRVSviggtldaqgAGFWAcrksgqncpvgsrsitfdwasnvMISGLTSINSQLIHLAINSCKNVIVRNvkliapdespntdgihiqsstgvkitgsimqtgddcisigpgtrnlymssikcgpghgvsigslgwgvnedgvenvtltnsrftgsdngvrikswarpsnsfVRNVLFQNIImknvqnpilidqnycphnqcphqasgvkisqvtyrniqgtsataeavtfdcspgnpcrgiiLQDIKLTYMNKaaatssckniggmssgvlmpesclyeg
MAAKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLiapdespntdgihIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTltnsrftgsdngvrikswarpsnsFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEavtfdcspgnpCRGIILQDIKLTYMNKAAATssckniggmssgvlmpesclyeg
MAAKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCLYEG
***KLLISCILSLFLTFFFKPSNAAYNVIDLGAKSD**TDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAP*******GIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIG****************
**AKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCLY**
MAAKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCLYEG
*AAKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESC****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAKLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCLYEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query392 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 0.966 0.964 0.538 1e-119
O22818405 Probable polygalacturonas no no 0.956 0.925 0.506 1e-107
Q39786407 Polygalacturonase OS=Goss N/A no 0.984 0.948 0.423 9e-87
Q39766407 Polygalacturonase OS=Goss N/A no 0.984 0.948 0.420 5e-86
P35336467 Polygalacturonase OS=Acti N/A no 0.913 0.766 0.431 1e-79
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.918 0.954 0.420 2e-78
Q05967396 Polygalacturonase OS=Nico N/A no 0.956 0.946 0.405 5e-78
O23147431 Polygalacturonase ADPG1 O no no 0.946 0.860 0.401 7e-77
P24548362 Exopolygalacturonase (Fra N/A no 0.887 0.961 0.428 6e-76
P35338410 Exopolygalacturonase OS=Z N/A no 0.931 0.890 0.380 1e-75
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/388 (53%), Positives = 275/388 (70%), Gaps = 9/388 (2%)

Query: 10  ILSLFLTFFFKPSNA-----AYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVP 64
           + SL L F F  ++A      YNV  LGAK+DG+TDST+AFL AWA AC+S+    IYVP
Sbjct: 7   LFSLSLIFVFMINSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVP 66

Query: 65  TGRYLIKNIVFRGPCKNK-IAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLD 123
            G + ++++VF GPCKN  I  +I GT+VAP+DY VIG   NWI F  V+ V++ GG LD
Sbjct: 67  AGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILD 126

Query: 124 AQGAGFWACRK-SGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNV 182
            QG   WAC+   G++CP G+ ++ F  ++N+++SGL S+NSQ+ H+ IN  +NV ++ V
Sbjct: 127 GQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGV 186

Query: 183 KLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSI 242
           ++     SPNTDGIH+Q S+GV I  S + TGDDC+SIGPGT NL++  + CGPGHG+SI
Sbjct: 187 RVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISI 246

Query: 243 GSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPIL 302
           GSLG    E GV+NVT+    F+G+ NG+RIKSW RPS  F RN+LFQ+  M NV+NPI+
Sbjct: 247 GSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIV 306

Query: 303 IDQNYCPHNQ-CPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLT 361
           IDQ+YCP N+ CP Q SGV+IS VTY +I GTSAT  AV FDCSP +PCR I L+D+KLT
Sbjct: 307 IDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLT 366

Query: 362 YMNKAAATSSCKNIGGMSSGVLMPESCL 389
           Y N+AA  SSC +  G + GV+ P SCL
Sbjct: 367 YKNQAAE-SSCSHADGTTEGVVQPTSCL 393
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function description
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
224117798390 predicted protein [Populus trichocarpa] 0.982 0.987 0.759 1e-172
224092830390 predicted protein [Populus trichocarpa] 0.979 0.984 0.734 1e-168
224117794390 predicted protein [Populus trichocarpa] 0.982 0.987 0.757 1e-165
255576410388 Polygalacturonase precursor, putative [R 0.984 0.994 0.710 1e-161
255576408388 Polygalacturonase precursor, putative [R 0.984 0.994 0.736 1e-161
147783619389 hypothetical protein VITISV_035657 [Viti 0.982 0.989 0.702 1e-160
359478302469 PREDICTED: polygalacturonase [Vitis vini 0.979 0.818 0.704 1e-159
255576412387 Polygalacturonase precursor, putative [R 0.982 0.994 0.736 1e-158
15224383392 putative polygalacturonase /pectinase [A 0.989 0.989 0.656 1e-152
356498258395 PREDICTED: polygalacturonase-like [Glyci 0.979 0.972 0.664 1e-151
>gi|224117798|ref|XP_002331634.1| predicted protein [Populus trichocarpa] gi|222874030|gb|EEF11161.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/391 (75%), Positives = 340/391 (86%), Gaps = 6/391 (1%)

Query: 3   AKLLISCILSLFLTFFFKPSNAA---YNVIDLGAKSDGETDSTQAFLKAWAAACSSVKAS 59
           AK ++S ++ LFL   F+ SNAA   YNVI  GAK DG+TDSTQ FLKAW+AAC S   S
Sbjct: 2   AKFVVSYVV-LFLFCTFQQSNAASASYNVIKFGAKPDGKTDSTQPFLKAWSAACGSASPS 60

Query: 60  TIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIG 119
           TI VP GRYL+K  VFRGPCKNKI +QI GT+VAPTDY  +G +G WILF++V+RVSV G
Sbjct: 61  TINVPKGRYLLKATVFRGPCKNKITVQIDGTLVAPTDYRALGNSGYWILFIKVNRVSVFG 120

Query: 120 GTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIV 179
           GTLDA+GAGFWACRKSGQNCPVG+RSITF+WA++++ISGLTSINSQ +HL INSC NV+V
Sbjct: 121 GTLDAKGAGFWACRKSGQNCPVGARSITFNWANDILISGLTSINSQSMHLVINSCNNVLV 180

Query: 180 RNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHG 239
           RNV++IAPD+SPNTDGIH+Q+STGV ITGS +QTGDDCISIGP TRN+ MSSIKCGPGHG
Sbjct: 181 RNVRVIAPDQSPNTDGIHVQTSTGVTITGSTLQTGDDCISIGPSTRNMLMSSIKCGPGHG 240

Query: 240 VSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQN 299
           +SIGSLG   NE GVEN+TLTNS F+GSDNGVRIKSWARPSN FVRNV+FQN+IMKNV+N
Sbjct: 241 ISIGSLGKDFNEGGVENITLTNSIFSGSDNGVRIKSWARPSNGFVRNVVFQNLIMKNVRN 300

Query: 300 PILIDQNYCPHNQ-CPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDI 358
           PI++DQNYCP+NQ CP Q+SGVKISQVTYRNIQGTSA+ EAVTFDCS  NPCRGI LQDI
Sbjct: 301 PIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIQGTSASPEAVTFDCSSSNPCRGIKLQDI 360

Query: 359 KLTYMNKAAATSSCKNIGGMSSGVLMPESCL 389
           KLTYMN  AATSSCKNIGG SSGVLMPESC+
Sbjct: 361 KLTYMN-TAATSSCKNIGGTSSGVLMPESCI 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092830|ref|XP_002309713.1| predicted protein [Populus trichocarpa] gi|222852616|gb|EEE90163.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117794|ref|XP_002331633.1| predicted protein [Populus trichocarpa] gi|222874029|gb|EEF11160.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576410|ref|XP_002529097.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531448|gb|EEF33281.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255576408|ref|XP_002529096.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531447|gb|EEF33280.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147783619|emb|CAN68140.1| hypothetical protein VITISV_035657 [Vitis vinifera] gi|296084360|emb|CBI24748.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359478302|ref|XP_002275740.2| PREDICTED: polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576412|ref|XP_002529098.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531449|gb|EEF33282.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15224383|ref|NP_181917.1| putative polygalacturonase /pectinase [Arabidopsis thaliana] gi|3212847|gb|AAC23398.1| putative polygalacturonase [Arabidopsis thaliana] gi|67633606|gb|AAY78727.1| putative polygalacturonase/pectinase [Arabidopsis thaliana] gi|330255247|gb|AEC10341.1| putative polygalacturonase /pectinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356498258|ref|XP_003517970.1| PREDICTED: polygalacturonase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.977 0.977 0.667 4.2e-143
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.969 0.964 0.621 1e-130
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.992 0.987 0.604 1.9e-129
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.989 0.984 0.541 2.3e-119
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.966 0.976 0.566 6.2e-117
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.971 0.992 0.533 9.4e-114
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.938 0.908 0.516 9.8e-103
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.977 0.964 0.491 4.9e-101
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.918 0.954 0.420 6.8e-79
TAIR|locus:2088252445 AT3G14040 [Arabidopsis thalian 0.933 0.822 0.433 7.9e-78
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
 Identities = 259/388 (66%), Positives = 312/388 (80%)

Query:     6 LISCILSLFLTFFF-KPSNAA--YNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIY 62
             L++ +L  F +F   K S AA  YNV+  GAK DG TDST+AFL AW AAC S  A T+ 
Sbjct:     6 LVAVLLMFFSSFLLMKSSTAASNYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVTVT 65

Query:    63 VPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTL 122
             VP G +L+K + FRGPC+++I  QI GTIVAP+DY  +G +G WILFV+V+R+S+IGGTL
Sbjct:    66 VPRGSFLLKPVEFRGPCRSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTL 125

Query:   123 DAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNV 182
             DA+GA FWACRKSG++CPVG+RS+TF+WA++V++SGLTSINSQ  HL INSC NVIVR V
Sbjct:   126 DARGASFWACRKSGKSCPVGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKV 185

Query:   183 KLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSI 242
             KL+APD+SPNTDG+H+Q S GV +T     TGDDCISIGPGTRNLYMS + CGPGHG+SI
Sbjct:   186 KLVAPDQSPNTDGLHVQGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISI 245

Query:   243 GSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPIL 302
             GSLG   NE GVEN+TL NS F+GSDNGVRIK+WAR S  FVRNVLFQN+IMKNVQNPI+
Sbjct:   246 GSLGRDANEAGVENITLINSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPII 305

Query:   303 IDQNYCPHNQ-CPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLT 361
             +DQNYCP NQ CP Q SGVKISQV YRNIQGTS T +A+TFDCS  NPC+ I L DIKLT
Sbjct:   306 VDQNYCPSNQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRSNPCQAIRLHDIKLT 365

Query:   362 YMNKAAATSSCKNIGGMSSGVLMPESCL 389
             + N  +ATS+CKNI G+ +GV+MP+ CL
Sbjct:   366 F-NGRSATSTCKNIKGVKAGVVMPQGCL 392
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
TAIR|locus:2088252 AT3G14040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48979PGLR_PRUPE3, ., 2, ., 1, ., 1, 50.53860.96680.9643N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-173
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-112
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-99
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 3e-97
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 5e-96
PLN03010409 PLN03010, PLN03010, polygalacturonase 3e-83
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 6e-81
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 7e-22
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 7e-09
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  488 bits (1256), Expect = e-173
 Identities = 238/383 (62%), Positives = 293/383 (76%), Gaps = 3/383 (0%)

Query: 10  ILSLFLTFFFKPSNAA--YNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGR 67
           +L   LTF    S+A+  +NV+  GAK DG TDST AFLKAW  AC S  ++T+ VPTG 
Sbjct: 10  LLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGT 69

Query: 68  YLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGA 127
           +L+K I F GPCK+KI  Q+ GT+VAP DY   G +G WILF +V+R S++GGT DA+  
Sbjct: 70  FLLKVITFGGPCKSKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARAN 129

Query: 128 GFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAP 187
           GFW+CRKSGQNCP G RSI+F+ A +V+ISG+ S+NSQ+ H+ +N C NV+VRNVKL+AP
Sbjct: 130 GFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAP 189

Query: 188 DESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGW 247
             SPNTDG H+Q STGV  TGS +QTGDDC++IGPGTRN  ++ + CGPGHGVSIGSL  
Sbjct: 190 GNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAK 249

Query: 248 GVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNY 307
            +NEDGVENVT+++S FTGS NGVRIKSWARPS  FVRNV FQ+++MKNV+NPI+IDQNY
Sbjct: 250 ELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNY 309

Query: 308 CPHNQ-CPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKA 366
           CP ++ CP++ SGVKISQVTY+NIQGTSAT EA+   CS  +PC GI LQDIKLTY    
Sbjct: 310 CPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT 369

Query: 367 AATSSCKNIGGMSSGVLMPESCL 389
            ATS C N  G S GV+ P SCL
Sbjct: 370 PATSFCFNAVGKSLGVIQPTSCL 392

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 392
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.95
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.89
PLN03003456 Probable polygalacturonase At3g15720 99.84
PLN02218431 polygalacturonase ADPG 99.84
PLN03010409 polygalacturonase 99.84
PLN02793443 Probable polygalacturonase 99.84
PLN02155394 polygalacturonase 99.83
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.83
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.79
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.77
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.75
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.4
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.13
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.87
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.83
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.83
PLN02497331 probable pectinesterase 98.78
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.76
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.69
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.61
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.59
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.57
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.54
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.46
PLN02773317 pectinesterase 98.45
PLN02634359 probable pectinesterase 98.42
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.4
PLN02480343 Probable pectinesterase 98.39
PLN02176340 putative pectinesterase 98.38
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.35
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.34
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.34
PLN02170529 probable pectinesterase/pectinesterase inhibitor 98.3
PLN02432293 putative pectinesterase 98.26
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 98.25
PLN02682369 pectinesterase family protein 98.25
smart00656190 Amb_all Amb_all domain. 98.24
PLN02665366 pectinesterase family protein 98.24
PLN02304379 probable pectinesterase 98.2
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 98.15
PRK10531422 acyl-CoA thioesterase; Provisional 98.11
PLN02671359 pectinesterase 98.1
PLN02916502 pectinesterase family protein 98.07
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 98.03
PLN02301548 pectinesterase/pectinesterase inhibitor 98.03
PLN02506537 putative pectinesterase/pectinesterase inhibitor 98.02
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.99
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.99
smart00656190 Amb_all Amb_all domain. 97.99
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.98
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.95
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.94
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.94
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.91
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.9
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.89
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.88
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.88
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.86
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.85
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.8
PLN02197588 pectinesterase 97.7
PLN02314586 pectinesterase 97.66
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.35
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.3
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.26
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 97.2
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.1
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.74
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.06
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 94.87
PLN02480343 Probable pectinesterase 94.53
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.22
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.15
PRK10531422 acyl-CoA thioesterase; Provisional 92.88
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 92.68
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 92.43
PLN02197588 pectinesterase 92.11
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 90.47
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 86.95
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 85.97
PLN02468565 putative pectinesterase/pectinesterase inhibitor 84.52
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 84.42
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 82.98
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 82.57
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 81.95
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 80.83
PLN02773317 pectinesterase 80.51
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.5e-77  Score=578.47  Aligned_cols=384  Identities=61%  Similarity=1.056  Sum_probs=346.7

Q ss_pred             hhHHHHHHHHhhhccccCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceEEEEEEEEecCCCccE
Q 041973            4 KLLISCILSLFLTFFFKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKI   83 (392)
Q Consensus         4 ~~l~~~~~~~~l~~~~~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~v   83 (392)
                      .+|++|+.|.+.   +...++++||++|||++||++|||+|||+|+++||++.+|++|+||+|+|++++|.|.|||||++
T Consensus         9 ~~~~~~~~~~~~---~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcksnv   85 (394)
T PLN02155          9 PLLFTLLTFIDV---SSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKSKI   85 (394)
T ss_pred             hHHHHHHHHhhc---cccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCCCc
Confidence            355555555553   33446799999999999999999999999998778988999999999999999999999999999


Q ss_pred             EEEEceEEEecCccccccCcccEEEEEeeeEEEEEccEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEec
Q 041973           84 AIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSIN  163 (392)
Q Consensus        84 ~l~~~G~l~~~~~~~~~~~~~~li~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n  163 (392)
                      +|+++|+|+.+.++..|.....|+.+.+.+|+.|.||+|||+|+.||.....+...+.+|+++.|.+|++++|++++++|
T Consensus        86 ~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~n  165 (394)
T PLN02155         86 TFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMN  165 (394)
T ss_pred             eEEEeeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEc
Confidence            99999999988888888655679999999999999999999999999876554555667889999999999999999999


Q ss_pred             cccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEE
Q 041973          164 SQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIG  243 (392)
Q Consensus       164 ~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~ig  243 (392)
                      +|.|++++..|++|+|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++||
T Consensus       166 Sp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIG  245 (394)
T PLN02155        166 SQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIG  245 (394)
T ss_pred             CCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEec
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCC-CCCCCCCcceE
Q 041973          244 SLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHN-QCPHQASGVKI  322 (392)
Q Consensus       244 s~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i  322 (392)
                      |+|.+...+.++||+++||+|.++.+|++||+|.+.++|.|+||+|+||+|++++.||.|.+.|.... .++...+...|
T Consensus       246 S~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i  325 (394)
T PLN02155        246 SLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKI  325 (394)
T ss_pred             cccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEE
Confidence            99876556889999999999999999999999975567999999999999999999999999996533 34444556899


Q ss_pred             EeEEEEeEEEeeCCCceEEEEcCCCCceecEEEEeEEEEecCCccCcceeecccccccceecCCCcCC
Q 041973          323 SQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSGVLMPESCLY  390 (392)
Q Consensus       323 ~nI~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  390 (392)
                      +||+|+||+++.....++.+.|.++.+|+||+|+||+++.+++....+.|+|++|.+.++++|++|+.
T Consensus       326 ~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~  393 (394)
T PLN02155        326 SQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN  393 (394)
T ss_pred             EEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence            99999999999876678899999999999999999999988665568999999999999999999985

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 2e-19
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 3e-18
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-18
1nhc_A336 Structural Insights Into The Processivity Of Endopo 3e-16
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 9e-16
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 3e-15
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 2e-14
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-09
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 2e-08
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 5e-05
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure 
Iteration: 1

 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 18/265 (6%)
Query: 119 GGTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVM---ISGLTSINSQLIHLAINSCK 175
           G ++D QG+ +W  + S      G     F +A ++    I GL  +N+ +   +INS  
Sbjct: 77  GHSIDCQGSRWWDSKGSNG----GKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSAT 132
Query: 176 NVIVRNVKL--IAPDESP--NTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSS 231
            + V +V +   A D +   NTD   + SSTGV I+G+ ++  DDC++I  GT N+  + 
Sbjct: 133 TLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTG 191
Query: 232 IKCGPGHGVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQN 291
             C  GHG+SIGS+G G +++ V+ VT++NS+   SDNGVRIK+ +  + S V  V +  
Sbjct: 192 GTCSGGHGLSIGSVG-GRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGS-VSGVTYSG 249
Query: 292 IIMKNV-QNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPC 350
           I + N+ +  I+I+Q+Y   +      +GV I+ +T   I G+ A++    +       C
Sbjct: 250 ITLSNIAKYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGAC 309
Query: 351 RGIILQDIKLTYMNKAAATSSCKNI 375
                  + +T   K+   + C NI
Sbjct: 310 SNWKWSGVSVTGGKKS---TKCSNI 331
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-122
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-116
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-107
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-105
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-101
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-100
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 6e-99
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 7e-95
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 3e-94
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-87
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 6e-37
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 4e-34
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-29
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 2e-24
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 6e-16
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-13
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 5e-12
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 5e-08
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 7e-06
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  359 bits (923), Expect = e-122
 Identities = 82/379 (21%), Positives = 148/379 (39%), Gaps = 33/379 (8%)

Query: 20  KPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKN-IVFRGP 78
           K +    N++  GA +D  TD   A   AWAA C S     +Y+P+G Y +   +   G 
Sbjct: 15  KGATKTCNILSYGAVADNSTDVGPAITSAWAA-CKS--GGLVYIPSGNYALNTWVTLTGG 71

Query: 79  CKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIG----GTLDAQGAGFWACRK 134
                AIQ+ G I           +GN I         +      G +   G  +     
Sbjct: 72  SA--TAIQLDGIIYRTGTA-----SGNMIAVTDTTDFELFSSTSKGAVQGFGYVYH---- 120

Query: 135 SGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTD 194
                  G+R +     ++  +  +  +++   H  +++C +  V N+ +   +     D
Sbjct: 121 --AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLD 177

Query: 195 GIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGV 254
           GI +  S  + +    +   D+C+++     N+ + SI C    G ++GSLG    +  V
Sbjct: 178 GIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLG---ADTDV 233

Query: 255 ENVTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCP 314
            ++   N     S+    IKS     +  V NVL +N I       + ID  +       
Sbjct: 234 TDIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA 291

Query: 315 HQASGVKISQVTYRNIQGTS---ATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSS 371
               GV+++ +T +N +GT    AT   +   CS   PC  + L+DI +   + ++    
Sbjct: 292 --GDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYL 349

Query: 372 CKNIGGMSSGVLMPESCLY 390
           C++  G    +    S   
Sbjct: 350 CRSAYGSGYCLKDSSSHTS 368
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.96
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.92
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.9
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.89
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.87
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.86
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.84
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.83
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.83
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.76
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.76
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.65
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.44
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.44
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.43
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 99.36
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.36
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.35
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.3
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.23
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.77
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.71
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.69
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.68
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.67
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.62
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.53
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.5
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.44
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.38
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.37
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.26
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.21
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.21
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.18
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.18
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.13
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.11
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.02
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.99
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.88
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.84
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.73
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.7
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.63
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.62
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.57
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.29
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.17
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.94
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.74
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.45
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.1
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 95.8
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 95.7
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.11
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.29
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.29
2v5i_A 559 Salmonella typhimurium DB7155 bacteriophage DET7 t 90.97
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 90.1
2vfm_A 559 Bifunctional tail protein; P22 tailspike protein, 89.27
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 89.01
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 87.22
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 84.54
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 84.12
3riq_A 543 Tailspike protein; right handed beta-helix, endorh 84.07
2xc1_A 666 Bifunctional tail protein; hydrolase, endoglycosid 83.82
3riq_A543 Tailspike protein; right handed beta-helix, endorh 80.96
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=1.2e-62  Score=485.85  Aligned_cols=332  Identities=24%  Similarity=0.396  Sum_probs=294.6

Q ss_pred             ceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceEEEEEEEEecCCCccEEEEEceEEEecCccccc-c
Q 041973           23 NAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKNIVFRGPCKNKIAIQIKGTIVAPTDYHVI-G  101 (392)
Q Consensus        23 ~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~v~l~~~G~l~~~~~~~~~-~  101 (392)
                      ++.++|++|||+|||++|||+|||+||++ |++.++++|+||+|+|++++|.|    +++++|+++|+|+++.++.+| +
T Consensus        25 ~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~~~ggg~v~vP~G~yl~~~l~l----~s~v~l~l~gtL~~s~d~~~y~p   99 (448)
T 3jur_A           25 DREVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEGVFLTGPIHL----KSNIELHVKGTIKFIPDPERYLP   99 (448)
T ss_dssp             SCEEEGGGGTCCCEEEEECHHHHHHHHHH-HHHHTCEEEEECSSEEEESCEEC----CTTEEEEESSEEEECCCGGGGCS
T ss_pred             CcEEEEEecccCCCCCeecHHHHHHHHHh-hhhcCCeEEEECCCcEEEeeeEe----CCCcEEEEEEEEEecCCHHHhCc
Confidence            56899999999999999999999999985 67778899999999999999999    599999999999999998887 2


Q ss_pred             C------------cccEEEEEeeeEEEEEc-cEEeCCC--CccccccCC-------------------------------
Q 041973          102 K------------TGNWILFVQVDRVSVIG-GTLDAQG--AGFWACRKS-------------------------------  135 (392)
Q Consensus       102 ~------------~~~li~~~~~~nv~I~G-g~idg~g--~~~w~~~~~-------------------------------  135 (392)
                      .            ..+||.+.+.+||+|+| |+|||+|  +.||+....                               
T Consensus       100 ~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~  179 (448)
T 3jur_A          100 VVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEE  179 (448)
T ss_dssp             CEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHTCCGGG
T ss_pred             ccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcccCcchh
Confidence            1            14689999999999999 9999999  889975321                               


Q ss_pred             ---CCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceeeEEEEeEEEECCCCCCCCCceeeeceecEEEEceEEe
Q 041973          136 ---GQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQ  212 (392)
Q Consensus       136 ---~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~  212 (392)
                         +.....||++|.|.+|+|++|++++++|++.|++++..|++++|++++|.++  ++|+|||++.+|+||+|+||+|.
T Consensus       180 ~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~~i~  257 (448)
T 3jur_A          180 RVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFD  257 (448)
T ss_dssp             CBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESCEEE
T ss_pred             hhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEeeEEE
Confidence               0123578999999999999999999999999999999999999999999987  58999999999999999999999


Q ss_pred             cCCceEEeCCC-----------ceeEEEEeeee--cCCc-eeEEEecCCCCCCCcEEEEEEEeeEEeCCcceEEEEeecC
Q 041973          213 TGDDCISIGPG-----------TRNLYMSSIKC--GPGH-GVSIGSLGWGVNEDGVENVTLTNSRFTGSDNGVRIKSWAR  278 (392)
Q Consensus       213 ~gdD~i~~~~~-----------s~ni~i~n~~~--~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~  278 (392)
                      ++||||+++++           ++||+|+||+|  ..+| |++|||++    .+.++||+|+||+|.++.+|++||++.+
T Consensus       258 ~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~GirIKt~~g  333 (448)
T 3jur_A          258 TGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALRLKTNSR  333 (448)
T ss_dssp             ESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEEEECCTT
T ss_pred             eCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEEEEEEcC
Confidence            99999999997           89999999999  5666 79999983    5789999999999999999999999864


Q ss_pred             CCCceEEeEEEEEEEEecCceeE-EEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeCCCceEEEEcCCCCceecEEEEe
Q 041973          279 PSNSFVRNVLFQNIIMKNVQNPI-LIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSATAEAVTFDCSPGNPCRGIILQD  357 (392)
Q Consensus       279 ~~~g~v~ni~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~n  357 (392)
                       ++|.++||+|+||+|+++.+++ .|++.|...  +  ....+.|+||+|+||+++. ...++.+.|.++.+|+||+|+|
T Consensus       334 -~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~--~--~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~~~I~~~n  407 (448)
T 3jur_A          334 -RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE--E--GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYVKDILISD  407 (448)
T ss_dssp             -TCSEEEEEEEESCEEEEESSEEEEEESCGGGC--C--CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCEEEEEEEE
T ss_pred             -CCceEeeEEEEEEEEECCccccEEEEeeccCC--C--CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCEeeEEEEE
Confidence             6799999999999999999988 899988643  1  2234689999999999998 4678999999999999999999


Q ss_pred             EEEEecCCccCcceeec
Q 041973          358 IKLTYMNKAAATSSCKN  374 (392)
Q Consensus       358 i~i~~~~~~~~~~~c~~  374 (392)
                      |++++...   +..|.+
T Consensus       408 v~i~~~~~---~~~~~~  421 (448)
T 3jur_A          408 TIIEGAKI---SVLLEF  421 (448)
T ss_dssp             EEEESCSE---EEEEEE
T ss_pred             EEEEcccc---ceeEec
Confidence            99997543   356666
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>2xc1_A Bifunctional tail protein; hydrolase, endoglycosidase, salmonella phage P22; HET: PE4; 1.65A {Enterobacteria phage P22} PDB: 1lkt_A Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 392
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 3e-85
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-82
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 4e-77
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-70
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-67
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 8e-66
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 9e-65
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 3e-57
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 9e-06
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  263 bits (673), Expect = 3e-85
 Identities = 83/375 (22%), Positives = 148/375 (39%), Gaps = 25/375 (6%)

Query: 20  KPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKN-IVFRGP 78
           K +    N++  GA +D  TD   A   AWAA C S     +Y+P+G Y +   +   G 
Sbjct: 15  KGATKTCNILSYGAVADNSTDVGPAITSAWAA-CKS--GGLVYIPSGNYALNTWVTLTGG 71

Query: 79  CKNKIAIQIKGTIVAPTDYHVIGKTGNWILFVQVDRVSVIGGTLDAQGAGFWACRKSGQN 138
                AIQ+ G I           +GN I         +   T      GF     +   
Sbjct: 72  SA--TAIQLDGIIYRTGT-----ASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHA--E 122

Query: 139 CPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKNVIVRNVKLIAPDESPNTDGIHI 198
              G+R +     ++  +  +  +++   H  +++C +  V N+ +   +     DGI +
Sbjct: 123 GTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLDGIDV 181

Query: 199 QSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVENVT 258
             S  + +    +   D+C+++     N+ + SI C    G ++GSLG    +  V ++ 
Sbjct: 182 WGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIV 237

Query: 259 LTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQAS 318
             N     S+    IKS     +  V NVL +N I       + ID  +           
Sbjct: 238 YRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA--GD 293

Query: 319 GVKISQVTYRNIQGTS---ATAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNI 375
           GV+++ +T +N +GT    AT   +   CS   PC  + L+DI +   + ++    C++ 
Sbjct: 294 GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSA 353

Query: 376 GGMSSGVLMPESCLY 390
            G    +    S   
Sbjct: 354 YGSGYCLKDSSSHTS 368
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.85
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.83
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.82
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.82
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.81
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.77
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.71
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.61
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.58
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.52
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.44
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.39
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.33
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.06
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.04
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.97
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.91
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.72
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.65
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.61
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.55
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.42
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.2
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.1
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.87
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.97
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.67
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.06
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 93.69
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 93.4
d1tywa_ 554 P22 tailspike protein {Salmonella phage P22 [TaxId 88.37
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 84.12
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 83.7
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 83.44
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 81.0
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.7e-59  Score=459.44  Aligned_cols=341  Identities=23%  Similarity=0.382  Sum_probs=293.2

Q ss_pred             ccCCceeEEEecCCccCCCCcccHHHHHHHHHHhcccCCCcEEEEcCceEEEEE-EEEecCCCccEEEEEceEEEecCcc
Q 041973           19 FKPSNAAYNVIDLGAKSDGETDSTQAFLKAWAAACSSVKASTIYVPTGRYLIKN-IVFRGPCKNKIAIQIKGTIVAPTDY   97 (392)
Q Consensus        19 ~~~~~~~~~v~~~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~-l~l~~~~~s~v~l~~~G~l~~~~~~   97 (392)
                      +.++.+++||+||||+|||++|||+|||+|++ ||+  ++++|+||+|+|++.+ +.|.++  +++.|+++|+|++..+.
T Consensus        14 ~~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~--~~~~l~~~G~i~~~~~~   88 (422)
T d1rmga_          14 TKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGG--SATAIQLDGIIYRTGTA   88 (422)
T ss_dssp             HHHHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESC--EEEEEEECSEEEECCCC
T ss_pred             ccCCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCC--CceEEEEeEEEEeccCC
Confidence            34457899999999999999999999999997 464  5779999999998776 888875  78999999999876655


Q ss_pred             ccccCcccEEEEEeeeEEEEEc-cEEeCCCCccccccCCCCCCCCCCeeEEEEecCcEEEEeeEEeccccceEEEeceee
Q 041973           98 HVIGKTGNWILFVQVDRVSVIG-GTLDAQGAGFWACRKSGQNCPVGSRSITFDWASNVMISGLTSINSQLIHLAINSCKN  176 (392)
Q Consensus        98 ~~~~~~~~li~~~~~~nv~I~G-g~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~  176 (392)
                      ..+.  ..+....+.+.+.+.| |+|||+|..||..      ...+|.+++|.+|+|++|++++++|++.|++.+..|++
T Consensus        89 ~~~~--~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~------~~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~  160 (422)
T d1rmga_          89 SGNM--IAVTDTTDFELFSSTSKGAVQGFGYVYHAE------GTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSD  160 (422)
T ss_dssp             SSEE--EEEEEEEEEEEECSSSCCEEECCTHHHHTT------TCCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEE
T ss_pred             ccCE--EEeccCccEEEEEeecceEEecCcceecCC------CCCCCcEEEEEeeeeeEEECcEecCCCceEEEEecccc
Confidence            4331  2223334455566677 9999999999953      34578999999999999999999999999999999999


Q ss_pred             EEEEeEEEECCCCCCCCCceeeeceecEEEEceEEecCCceEEeCCCceeEEEEeeeecCCceeEEEecCCCCCCCcEEE
Q 041973          177 VIVRNVKLIAPDESPNTDGIHIQSSTGVKITGSIMQTGDDCISIGPGTRNLYMSSIKCGPGHGVSIGSLGWGVNEDGVEN  256 (392)
Q Consensus       177 v~i~~~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~n  256 (392)
                      ++|+|++|.++ +..|+|||++.+ +||+|+||+|.++|||++++++++||+|+|++|..++|+++|+++.   ...++|
T Consensus       161 v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~n  235 (422)
T d1rmga_         161 GEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTD  235 (422)
T ss_dssp             EEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEE
T ss_pred             EEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEE
Confidence            99999999986 467999999976 5899999999999999999999999999999999999999999863   456999


Q ss_pred             EEEEeeEEeCCcceEEEEeecCCCCceEEeEEEEEEEEecCceeEEEEeecCCCCCCCCCCCcceEEeEEEEeEEEeeC-
Q 041973          257 VTLTNSRFTGSDNGVRIKSWARPSNSFVRNVLFQNIIMKNVQNPILIDQNYCPHNQCPHQASGVKISQVTYRNIQGTSA-  335 (392)
Q Consensus       257 i~i~n~~~~~~~~gi~i~~~~~~~~g~v~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~-  335 (392)
                      |+|+||++.++..|+++|++.  +.|.|+||+|+||+++++.++|.|++.|.....+  ...+..|+||+|+||+++.. 
T Consensus       236 V~v~n~~~~~s~~g~~ik~~~--g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~--~~~~v~isnIt~~Ni~GT~~~  311 (422)
T d1rmga_         236 IVYRNVYTWSSNQMYMIKSNG--GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV--AGDGVQLNNITVKNWKGTEAN  311 (422)
T ss_dssp             EEEEEEEEESSSCSEEEEEBB--CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB--SSSCCEEEEEEEEEEEEEESC
T ss_pred             EEEEeEEEeCCCceEEEEEcC--CCceecceEEEEEEEecccccEEEecccCCCCCC--CCCCeEEEEEEEEeEEEEecC
Confidence            999999999999999999874  5689999999999999999999999998764322  23467899999999999864 


Q ss_pred             --CCceEEEEcCCCCceecEEEEeEEEEecCCccCcceeecccccccc
Q 041973          336 --TAEAVTFDCSPGNPCRGIILQDIKLTYMNKAAATSSCKNIGGMSSG  381 (392)
Q Consensus       336 --~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~~~c~~~~~~~~~  381 (392)
                        .+.++.+.|++..||+||+|+||+++.+.+..+.+.|+|++|...+
T Consensus       312 ~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~~~  359 (422)
T d1rmga_         312 GATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGYC  359 (422)
T ss_dssp             TTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEESTT
T ss_pred             CcccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeEEe
Confidence              3568999999999999999999999988876677899999987653
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure