Citrus Sinensis ID: 042001

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670
MEVVSSKDSSVASSPFSSPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPATGTQSISSSXELIIMESIFSKYVSFNMDTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLIVQALFVQQLNTHQAFKDCSESFRYMHRGEFSGSLPSSRCPNSKSLNQSESSFTDEAEPGSRPFSFLPTKDLAMKSCELSRTDYESTSFRIQNLEQELMSLKRSVVQNISKKTESVSTKQQNMKFYSLESRSLSKKRNPLGQVTGCIGSVNFASQRKYARKLLKVFRRISIFGSRKSKRKSGASGEWAKSI
ccccccccccccccccccccHHHHHHHcccccEEcccccccEEEEEccEEEEEcccHHHcccHHHHHHHcccccccccccccccHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccc
ccccccccccccccccccccHHHHHHHccccEEEEccccccEEEEEccEEEEEcccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccccEccEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
mevvsskdssvasspfsspniSALLKIKIVSWsqetglpvsirvrvgnrtfnlhkfplfsksgyfkkrlnesneyelpqhfpggpeTFEMIVLFIYgsstlidpfnvTALRCAAEFLEMTEEYcsgnlcerfDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEildperrrekpvVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRqgmkekyvNPIIVFYANKWLLYKKTRQFwensddksgdkdtnskCSEILQGILDLlplqekasrvipVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAqvedflfpatgtqsisssxELIIMESIFSKYVsfnmdtnhtpsasNSIVAELWDTFLchitsdpkmePKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHrhlsqeekgsvckyldcQKLSQEACIEAVQNELMPLRLIVQALFVQQLNTHQAFkdcsesfrymhrgefsgslpssrcpnskslnqsessftdeaepgsrpfsflptkdlamkscelsrtdyeSTSFRIQNLEQELMSLKRSVVQNISKKTESVstkqqnmkfYSLEsrslskkrnplgqvtgcigsvNFASQRKYARKLLKVFRRISifgsrkskrksgasgewaksI
mevvsskdssvasspfsspnisALLKIKIVSWSQETGLPVSIRVRVGnrtfnlhkfplfsksgyFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERRREKPVVTLEaltsqawcCERVKGIVSQELWIKDLLALPFGFFRRIIGSlrrqgmkekyvNPIIVFYANKWLLYKKTRQFWEnsddksgdkdtnSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPATGTQSISSSXELIIMESIFSKYVSFNMDTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLIVQALFVQQLNTHQAFKDCSESFRYMHRGEfsgslpssrcPNSKSLNQSEssftdeaepgsrpfsflptKDLAMKSCELSRTDYESTSFRIQNLEQELMSLKRSVVQNISkktesvstkqqnmkfyslesrslskkrnplgqvtgcigsvnfasQRKYARKLLKVfrrisifgsrkskrksgasgewaksI
MEVVsskdssvasspfsspnisALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPATGTQsisssxeliimesifsKYVSFNMDTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLIVQALFVQQLNTHQAFKDCSESFRYMHRGEFSGSLPSSRCPNSKSLNQSESSFTDEAEPGSRPFSFLPTKDLAMKSCELSRTDYESTSFRIQNLEQELMSLKRSVVQNISKKTESVSTKQQNMKFYSLESRSLSKKRNPLGQVTGCIGSVNFASQRKYARKLLKVfrrisifgsrkskrksgASGEWAKSI
********************ISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYKKTRQFW*****************EILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPATGTQSISSSXELIIMESIFSKYVSFNMDTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLIVQALFVQQLNTHQAFKDCSESFRYM******************************************************************************************************************GQVTGCIGSVNFASQRKYARKLLKVFRRISIFG******************
*******************************WSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYF***************FPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERRREKPV************************WIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYKKT****************NSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPATGTQSISSS*ELIIMESIFSK********************ELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLIVQALFVQQL*************************************************************************************************************************************************************************************
*****************SPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYKKTRQFWE************SKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPATGTQSISSSXELIIMESIFSKYVSFNMDTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLIVQALFVQQLNTHQAFKDCSESFRYMHRGE******************************SRPFSFLPTKDLAMKSCELSRTDYESTSFRIQNLEQELMSLKRSVVQNISKKTESVSTKQQNMKFYSLESRSLSKKRNPLGQVTGCIGSVNFASQRKYARKLLKVFRRISIF******************I
*********************SALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERR***********************IVSQELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYK******************NSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPATGTQSISSSXELIIMESIFSKYVSFNMDTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLIVQALFVQQLNTHQAFK***********************************************S*******A******S*TDYESTSFRIQNLEQELMSLKRSVVQN*********************************Q**GCIGSVNFASQRKYARKLLKVFRRISIFGS*****************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEVVSSKDSSVASSPFSSPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPATGTQSISSSXELIIMESIFSKYVSFNMDTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLIVQALFVQQLNTHQAFKDCSESFRYMHRGEFSGSLPSSRCPNSKSLNQSESSFTDEAEPGSRPFSFLPTKDLAMKSCELSRTDxxxxxxxxxxxxxxxxxxxxxxxxxxxxKTESVSTKQQNMKFYSLESRSLSKKRNPLGQVTGCIGSVNFASQRKYARKLLKVFRRISIFGSRKSKRKSGASGEWAKSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query670 2.2.26 [Sep-21-2011]
Q9LUB9625 BTB/POZ domain-containing yes no 0.894 0.958 0.545 0.0
Q9S9Q9665 BTB/POZ domain-containing no no 0.686 0.691 0.316 1e-62
O82253635 BTB/POZ domain-containing no no 0.646 0.681 0.308 3e-61
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.629 0.725 0.317 9e-60
Q66GP0604 BTB/POZ domain-containing no no 0.638 0.708 0.306 1e-59
Q9C9Z7617 BTB/POZ domain-containing no no 0.632 0.687 0.310 2e-58
Q9LYW0592 BTB/POZ domain-containing no no 0.661 0.748 0.306 1e-57
Q9FNB3591 Putative BTB/POZ domain-c no no 0.673 0.763 0.321 1e-57
Q8LPQ3569 BTB/POZ domain-containing no no 0.756 0.891 0.293 2e-57
Q9FKB6614 BTB/POZ domain-containing no no 0.628 0.685 0.310 2e-57
>sp|Q9LUB9|Y5813_ARATH BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana GN=At5g48130 PE=2 SV=1 Back     alignment and function desciption
 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/645 (54%), Positives = 463/645 (71%), Gaps = 46/645 (7%)

Query: 23  ALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFP 82
            LLKIK++SWS+ETGLP S+ VRV N++FNLHK  L +KSGYFK+R ++ +E E+PQ FP
Sbjct: 24  TLLKIKVLSWSKETGLPASVHVRVCNKSFNLHKSLLCAKSGYFKEREDQLSEIEIPQEFP 83

Query: 83  GGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQ 142
           GG ETFE I+LFIYG  TLI PFN+  LRCAA+FLEMTE++ +GNLCERFDLYLNQVV Q
Sbjct: 84  GGAETFEKIMLFIYGCPTLIHPFNIAGLRCAAQFLEMTEQHSTGNLCERFDLYLNQVVLQ 143

Query: 143 SWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQ 202
           +WDDTL+VL++CQ L+P +E+LLIVSRCIESLAF ACMEILDPERRREKPV+ LE + +Q
Sbjct: 144 NWDDTLVVLKKCQDLVPWSEDLLIVSRCIESLAFTACMEILDPERRREKPVIMLEGMVNQ 203

Query: 203 AWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYK 262
            W    ++ I++Q+ WIKDL  LPF FF++IIGSLRRQGMKE+YV+P++  YA+K ++  
Sbjct: 204 PWEYTNIERIINQDTWIKDLTDLPFEFFKKIIGSLRRQGMKERYVSPLVALYASKSVI-- 261

Query: 263 KTRQFWENSDDKSGDKDTNSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGL 322
                        G  +T     +ILQ  LDLL  ++KA R +PVGFYFA L+ +    L
Sbjct: 262 -----------PEGQTNT-----DILQRALDLLLTRDKAYRFVPVGFYFACLAHN----L 301

Query: 323 RSDSRAKLQEQIASLLHFAQVEDFLFPATGTQSISSSXELIIMESIFSKYVSFNMDTNHT 382
           + D+  KLQ+QI SLLH AQ E+F++P  G + ++ S EL+ MES+FS YVS   + + T
Sbjct: 302 KHDTVLKLQDQIVSLLHTAQPENFIYPKAGNRQVAFSQELLTMESLFSVYVSTESERHLT 361

Query: 383 PSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHR 442
            S+SN  V +LWD FL  +  D +M+  RF+EL+ETVP+S+R+SHDQLY A+  FL+ H 
Sbjct: 362 SSSSNVRVGKLWDIFLSRLPYDQEMKTTRFIELIETVPMSFRESHDQLYLAVNAFLQVHT 421

Query: 443 HLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLIVQALFVQQLNTHQAFKDCSESF 502
           ++SQEEKGS+C YL+CQKLSQEA +E V+NE MPLRL+VQALF+QQLNTHQAFKDCS+SF
Sbjct: 422 NISQEEKGSICSYLNCQKLSQEASLELVKNEKMPLRLVVQALFIQQLNTHQAFKDCSDSF 481

Query: 503 RYMHRGEFSGSLPSSRCPNSKSLNQSESSFT-DEAEPGSRPFSFLPTKDLAMKSCELSRT 561
           R+ +  +FSGS+     P+S+ L   +S  T DE  P +RP  FL  KD  +        
Sbjct: 482 RFTNSADFSGSV----VPSSRPLTSQQSPCTDDETGPRNRPLCFLMQKDATLD------- 530

Query: 562 DYESTSFRIQNLEQELMSLKRSVVQNISKKTESVSTKQQNMKFYSLESRSLSKKRNPLGQ 621
           ++ESTSFRI NLE++L+SLK+S+  + + K           K   L  RS S+ +N  GQ
Sbjct: 531 EFESTSFRIHNLEEQLVSLKKSLHSHDNLK-----------KPNCLGKRSASRNKNTFGQ 579

Query: 622 V-TGCIGSVNFASQRKYARKLLKVFRRISIFGSRKSKRKSGASGE 665
           V T CIGSV+F SQRKYA +LL++ RR+++FGSRK+ R      E
Sbjct: 580 VTTACIGSVSFTSQRKYANRLLQILRRVNLFGSRKTNRSKAGESE 624
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|O82253|SETH6_ARATH BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q8LPQ3|Y3084_ARATH BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query670
255586443673 protein binding protein, putative [Ricin 0.997 0.992 0.761 0.0
359485882674 PREDICTED: BTB/POZ domain-containing pro 0.998 0.992 0.752 0.0
356551632670 PREDICTED: BTB/POZ domain-containing pro 0.997 0.997 0.698 0.0
449453740682 PREDICTED: BTB/POZ domain-containing pro 1.0 0.982 0.689 0.0
356501719669 PREDICTED: BTB/POZ domain-containing pro 0.997 0.998 0.690 0.0
302121703671 phototropic-responsive NPH3 [Hypericum p 0.983 0.982 0.689 0.0
224131778496 predicted protein [Populus trichocarpa] 0.740 1.0 0.784 0.0
296084995557 unnamed protein product [Vitis vinifera] 0.831 1.0 0.623 0.0
15238900625 Phototropic-responsive NPH3 family prote 0.894 0.958 0.545 0.0
297791979624 phototropic-responsive NPH3 family prote 0.891 0.956 0.547 0.0
>gi|255586443|ref|XP_002533866.1| protein binding protein, putative [Ricinus communis] gi|223526188|gb|EEF28516.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/671 (76%), Positives = 572/671 (85%), Gaps = 3/671 (0%)

Query: 1   MEVVSSKDSSVASSPFSSPNISALLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFS 60
           M+V SSKDSSVASSPFSSPNI ALLKIKI+SWSQETGLPV++RVRVG+RTFNLHK PL S
Sbjct: 1   MDVASSKDSSVASSPFSSPNIGALLKIKIISWSQETGLPVTVRVRVGDRTFNLHKNPLSS 60

Query: 61  KSGYFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMT 120
           KSGYFKKRL E+ E ELPQ FPGGPETFEMI LFIYGSSTLIDPFNV ALRCAAEFLE+ 
Sbjct: 61  KSGYFKKRLIETTELELPQEFPGGPETFEMIALFIYGSSTLIDPFNVAALRCAAEFLELK 120

Query: 121 EEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACM 180
           EEYCSGNLCERFDLYLNQVV QSWDDTLIVLQRCQTLLP +EELLIV RCIESLAFMACM
Sbjct: 121 EEYCSGNLCERFDLYLNQVVLQSWDDTLIVLQRCQTLLPWSEELLIVGRCIESLAFMACM 180

Query: 181 EILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRQ 240
           EILDPERRR+KPVVTLEAL  QAW  E  K +V Q+LWIKDL+ALPFGFFRRIIGSLRRQ
Sbjct: 181 EILDPERRRDKPVVTLEALAGQAWSRETAKEMVIQDLWIKDLIALPFGFFRRIIGSLRRQ 240

Query: 241 GMKEKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDLLPLQEK 300
           GMKEKYV+P+IVFYANKW+L  KTRQFWENS D+ G+ D N++ S ILQGILDLLP +EK
Sbjct: 241 GMKEKYVSPVIVFYANKWVLSNKTRQFWENSGDRLGNVDANNRVSTILQGILDLLPTREK 300

Query: 301 ASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPATGTQSISSSX 360
           A RVIPVGFYFALLSRS EVGLRS+S+ KLQ+QIASLLH AQVEDFL P TGT S+++S 
Sbjct: 301 ARRVIPVGFYFALLSRSFEVGLRSESKTKLQDQIASLLHLAQVEDFLIPKTGTDSVATSM 360

Query: 361 ELIIMESIFSKYVSFNMDTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVP 420
           EL  MESIFS YV+ NMD N+TPS  NS VAELWD++L  I SDPKMEPKRF  LVETVP
Sbjct: 361 ELATMESIFSTYVTLNMDANNTPSPRNSAVAELWDSYLSLIASDPKMEPKRFTGLVETVP 420

Query: 421 VSWRQSHDQLYRAMIIFLKAHRHLSQEEKGSVCKYLDCQKLSQEACIEAVQNELMPLRLI 480
           +S RQSHDQLY+AM  FL+AH  +SQEEKG VCKYL+CQKLSQEACIEAVQNEL+PLRLI
Sbjct: 421 ISCRQSHDQLYQAMSTFLQAHLDVSQEEKGLVCKYLNCQKLSQEACIEAVQNELLPLRLI 480

Query: 481 VQALFVQQLNTHQAFKDCSESFRYMHRGEFSGSLPSSRCPNSKSLN--QSESSFTDEAEP 538
           VQALFVQQLNTHQAF++CS+SFR+ +  EFSGSL SSRCPNSKS N  ++ S +++ AEP
Sbjct: 481 VQALFVQQLNTHQAFRECSDSFRFANCREFSGSLSSSRCPNSKSQNLFETTSPYSEGAEP 540

Query: 539 GSRPFSFLPTKDLAMKSCELSRTDYESTSFRIQNLEQELMSLKRSVVQNIS-KKTESVST 597
            SR  SFL  KD+A +  ELSR +YESTSFRIQNLEQEL+SLK+S+    S K+ E +  
Sbjct: 541 VSRTLSFLLQKDVAEQRYELSRKEYESTSFRIQNLEQELLSLKKSLQLQSSIKRAEPMPA 600

Query: 598 KQQNMKFYSLESRSLSKKRNPLGQVTGCIGSVNFASQRKYARKLLKVFRRISIFGSRKSK 657
           K Q MK Y +E+RSLSKKRNPLGQVTGCIGSVNFASQR+YA +LLKV RRI++FGSRK K
Sbjct: 601 KAQTMKLYGMENRSLSKKRNPLGQVTGCIGSVNFASQRRYASRLLKVLRRITLFGSRKPK 660

Query: 658 RKSGASGEWAK 668
           +K    G  AK
Sbjct: 661 KKPSTPGLVAK 671

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359485882|ref|XP_002270802.2| PREDICTED: BTB/POZ domain-containing protein At5g48130-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551632|ref|XP_003544178.1| PREDICTED: BTB/POZ domain-containing protein At5g48130-like [Glycine max] Back     alignment and taxonomy information
>gi|449453740|ref|XP_004144614.1| PREDICTED: BTB/POZ domain-containing protein At5g48130-like [Cucumis sativus] gi|449532155|ref|XP_004173048.1| PREDICTED: BTB/POZ domain-containing protein At5g48130-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356501719|ref|XP_003519671.1| PREDICTED: BTB/POZ domain-containing protein At5g48130-like [Glycine max] Back     alignment and taxonomy information
>gi|302121703|gb|ADK92869.1| phototropic-responsive NPH3 [Hypericum perforatum] Back     alignment and taxonomy information
>gi|224131778|ref|XP_002321176.1| predicted protein [Populus trichocarpa] gi|222861949|gb|EEE99491.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296084995|emb|CBI28410.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15238900|ref|NP_199624.1| Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] gi|75264248|sp|Q9LUB9.1|Y5813_ARATH RecName: Full=BTB/POZ domain-containing protein At5g48130 gi|8777403|dbj|BAA96993.1| unnamed protein product [Arabidopsis thaliana] gi|332008239|gb|AED95622.1| Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297791979|ref|XP_002863874.1| phototropic-responsive NPH3 family protein [Arabidopsis lyrata subsp. lyrata] gi|297309709|gb|EFH40133.1| phototropic-responsive NPH3 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query670
TAIR|locus:2164763625 AT5G48130 [Arabidopsis thalian 0.349 0.374 0.670 3.3e-160
TAIR|locus:2077992569 AT3G50840 [Arabidopsis thalian 0.661 0.778 0.316 1.6e-59
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.720 0.817 0.311 8.8e-59
TAIR|locus:2158182579 NPY3 "NAKED PINS IN YUC MUTANT 0.653 0.756 0.331 5.9e-57
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.656 0.728 0.309 9.6e-57
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.646 0.705 0.316 7.8e-56
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.773 0.775 0.274 9.9e-56
TAIR|locus:2116752571 ENP "ENHANCER OF PINOID" [Arab 0.661 0.775 0.300 3.3e-55
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.470 0.473 0.319 9.3e-55
TAIR|locus:2077763617 AT3G08570 [Arabidopsis thalian 0.638 0.693 0.319 3.8e-53
TAIR|locus:2164763 AT5G48130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 862 (308.5 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
 Identities = 157/234 (67%), Positives = 197/234 (84%)

Query:    24 LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPG 83
             LLKIK++SWS+ETGLP S+ VRV N++FNLHK  L +KSGYFK+R ++ +E E+PQ FPG
Sbjct:    25 LLKIKVLSWSKETGLPASVHVRVCNKSFNLHKSLLCAKSGYFKEREDQLSEIEIPQEFPG 84

Query:    84 GPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQS 143
             G ETFE I+LFIYG  TLI PFN+  LRCAA+FLEMTE++ +GNLCERFDLYLNQVV Q+
Sbjct:    85 GAETFEKIMLFIYGCPTLIHPFNIAGLRCAAQFLEMTEQHSTGNLCERFDLYLNQVVLQN 144

Query:   144 WDDTLIVLQRCQTLLPSTEELLIVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQA 203
             WDDTL+VL++CQ L+P +E+LLIVSRCIESLAF ACMEILDPERRREKPV+ LE + +Q 
Sbjct:   145 WDDTLVVLKKCQDLVPWSEDLLIVSRCIESLAFTACMEILDPERRREKPVIMLEGMVNQP 204

Query:   204 WCCERVKGIVSQELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANK 257
             W    ++ I++Q+ WIKDL  LPF FF++IIGSLRRQGMKE+YV+P++  YA+K
Sbjct:   205 WEYTNIERIINQDTWIKDLTDLPFEFFKKIIGSLRRQGMKERYVSPLVALYASK 258
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2077992 AT3G50840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116752 ENP "ENHANCER OF PINOID" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LUB9Y5813_ARATHNo assigned EC number0.54570.89400.9584yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query670
pfam03000249 pfam03000, NPH3, NPH3 family 5e-65
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-07
pfam00651101 pfam00651, BTB, BTB/POZ domain 2e-06
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  214 bits (548), Expect = 5e-65
 Identities = 82/261 (31%), Positives = 138/261 (52%), Gaps = 21/261 (8%)

Query: 215 QELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYKKTRQFWENSDDK 274
           ++ W +DL  L    F+R+I +++ +G+K + +   ++ YA KWL           S   
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGL--------SRSG 52

Query: 275 SGDKDTNSKCSEILQGILDLLPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQI 334
           S ++D+  +   +L+ I+ LLP +      +   F F LL  ++ +G     R +L+ +I
Sbjct: 53  SSEEDSEEEQRALLETIVSLLPSE---KGSVSCSFLFKLLRAAIILGASESCREELERRI 109

Query: 335 ASLLHFAQVEDFLFPATGTQSISSSXELIIMESIFSKYVSFNMDTNH---------TPSA 385
              L  A ++D L P+  +    +  ++ +++ I   ++S +  T             S+
Sbjct: 110 GLQLDQATLDDLLIPSGYSGE-ETLYDVDLVQRILEVFLSRDAATQSSDDEDSEASPSSS 168

Query: 386 SNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHRHLS 445
           S   VA+L D +L  I  DP ++  +F+ L E VP S R SHD LYRA+ I+LKAH +LS
Sbjct: 169 SLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLS 228

Query: 446 QEEKGSVCKYLDCQKLSQEAC 466
           + EK  +C+ +DCQKLSQEAC
Sbjct: 229 ESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 670
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.87
PHA02713557 hypothetical protein; Provisional 99.82
PHA02790480 Kelch-like protein; Provisional 99.79
PHA03098534 kelch-like protein; Provisional 99.76
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.62
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.5
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.16
KOG4350620 consensus Uncharacterized conserved protein, conta 98.77
KOG4591280 consensus Uncharacterized conserved protein, conta 98.56
KOG4682488 consensus Uncharacterized conserved protein, conta 98.38
KOG07831267 consensus Uncharacterized conserved protein, conta 98.24
KOG07831267 consensus Uncharacterized conserved protein, conta 98.02
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.65
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.23
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.2
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.66
KOG2838401 consensus Uncharacterized conserved protein, conta 93.97
KOG3473112 consensus RNA polymerase II transcription elongati 93.77
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 90.37
KOG3840438 consensus Uncharaterized conserved protein, contai 90.12
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 88.58
KOG0511516 consensus Ankyrin repeat protein [General function 88.52
KOG2838401 consensus Uncharacterized conserved protein, conta 88.11
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=2.9e-85  Score=672.63  Aligned_cols=246  Identities=34%  Similarity=0.620  Sum_probs=218.9

Q ss_pred             cchhhhhhccCChHHHHHHHHHHHHcCCCCcchhHHHHHHHHHhhccccccccccCCCCCCCCccccccchhHHHHHHhc
Q 042001          215 QELWIKDLLALPFGFFRRIIGSLRRQGMKEKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDL  294 (670)
Q Consensus       215 ~dWW~eDL~~L~~dlf~rvI~am~~kg~~~~~I~~~l~~YA~kwl~~~~~~~~~~~s~~~~~~~~~~~k~r~lLEtiV~l  294 (670)
                      +|||||||+.|++|+|+|||.+|+++||++++||++|++||+||||+.++. .+..............++|.+||+||+|
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~-~~~~~~~~~~~~~~~~~~r~llEtiV~l   79 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRS-SSGSSSSAESSTSSENEQRELLETIVSL   79 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccc-cccccccccccchhHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999999999997543 2111111222334456789999999999


Q ss_pred             CCccccCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhccccccccccc-CCCCCccCCcchHHHHHHHHHhh
Q 042001          295 LPLQEKASRVIPVGFYFALLSRSLEVGLRSDSRAKLQEQIASLLHFAQVEDFLFPA-TGTQSISSSXELIIMESIFSKYV  373 (670)
Q Consensus       295 LP~e~k~~~~vsc~FLf~LLr~A~~l~as~~cr~~LE~rIg~qLdqAtldDLLIP~-~~~~~~~~~~dVd~v~riv~~f~  373 (670)
                      ||++ +  ++|||+|||+|||+|+++|+|++||.+||+|||+|||||||+|||||+ ..++  .++||||+|+|||++|+
T Consensus        80 LP~e-~--~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~--~t~yDVd~V~riv~~Fl  154 (258)
T PF03000_consen   80 LPPE-K--GSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGE--DTLYDVDLVQRIVEHFL  154 (258)
T ss_pred             CCCC-C--CcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcc--cchhhHHHHHHHHHHHH
Confidence            9997 4  799999999999999999999999999999999999999999999998 2222  36789999999999999


Q ss_pred             hccc-----------CCCCCCCchhhhhHhchhhhhhhhcCCCCCChhHHHHHHHhcCCcccccchhHHHHHHHHHHHcc
Q 042001          374 SFNM-----------DTNHTPSASNSIVAELWDTFLCHITSDPKMEPKRFMELVETVPVSWRQSHDQLYRAMIIFLKAHR  442 (670)
Q Consensus       374 ~~~~-----------~~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~~kF~~LAealP~~AR~~hDgLYRAIDiYLKaHp  442 (670)
                      ..+.           .+...+..++.+||||||+||+|||+|+||+|+||++|||+||++||++|||||||||||||+||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp  234 (258)
T PF03000_consen  155 SQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP  234 (258)
T ss_pred             hcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence            8621           12234557899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhcccccccccccCCHHHH
Q 042001          443 HLSQEEKGSVCKYLDCQKLSQEAC  466 (670)
Q Consensus       443 ~lse~Er~~lCr~ldc~KLS~EAc  466 (670)
                      +|||+||++||++|||||||+|||
T Consensus       235 ~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  235 GLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             cCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999998

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query670
3b84_A119 Zinc finger and BTB domain-containing protein 48; 4e-09
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 5e-09
2vpk_A116 Myoneurin; transcription regulation, transcription 7e-09
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 7e-09
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 7e-09
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 1e-08
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 1e-08
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-08
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 2e-08
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 5e-08
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 8e-08
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 1e-06
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 3e-06
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 4e-05
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-04
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 42  IRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPG-GPETFEMIVLFIYGSST 100
             + VG   F  H   L   S +F+    + +   +    P    E F +++ F Y    
Sbjct: 27  ATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSV--VLPAGFAEIFGLLLDFFYTGHL 84

Query: 101 LIDPFNVTALRCAAEFLEMTE--EYCS 125
            +   N   +  AA  L + E  E C 
Sbjct: 85  ALTSGNRDQVLLAARELRVPEAVELCQ 111
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query670
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.88
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.88
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.86
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.85
2vpk_A116 Myoneurin; transcription regulation, transcription 99.84
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.84
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.84
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.84
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.83
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.83
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.83
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.82
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.82
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.82
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.82
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.82
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.81
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.81
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.77
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.74
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.24
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.06
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.98
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.78
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.05
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.03
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.03
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.49
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.45
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.57
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.64
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 93.37
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 93.01
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 92.68
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 92.43
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=99.88  E-value=1.3e-22  Score=207.57  Aligned_cols=237  Identities=16%  Similarity=0.227  Sum_probs=171.8

Q ss_pred             CCCCCccchH-HHHHHhHhhhhhcCCCeeEEEEEC---CeEEeeccchhcccchHHHhhhcC------CCeEEeCC----
Q 042001           14 SPFSSPNISA-LLKIKIVSWSQETGLPVSIRVRVG---NRTFNLHKFPLFSKSGYFKKRLNE------SNEYELPQ----   79 (670)
Q Consensus        14 ~~~ss~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg---~~~F~lHK~vLas~S~YFr~lfs~------~~~I~L~~----   79 (670)
                      ..|.++.|+. +++  ..+.+|.+|.+|||+|.||   |++|++||.+|+++|+||++||+.      ..+|+|+.    
T Consensus         8 ~~~~~~~h~~~ll~--~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~   85 (279)
T 3i3n_A            8 EDFECSSHCSELSW--RQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSE   85 (279)
T ss_dssp             EEEECTTHHHHHHH--HHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSST
T ss_pred             cCcCCHhHHHHHHH--HHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEecccccc
Confidence            5678888887 444  5778999999999999998   999999999999999999999942      36788851    


Q ss_pred             -CCCCCHHHHHHHHHHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchh
Q 042001           80 -HFPGGPETFEMIVLFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQVVFQSWDDTLIVLQRCQTLL  158 (670)
Q Consensus        80 -d~PGGaeaFElv~~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~~v~~sw~dslavL~sC~~Ll  158 (670)
                       +++  +++|+.+++|+||+.+.+++.||..|+.||.+|||+      .|++.|+.||.+.+..         .+|..++
T Consensus        86 ~~v~--~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~------~L~~~c~~~L~~~l~~---------~n~~~i~  148 (279)
T 3i3n_A           86 PGPE--PDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLI------RLKEFCGEFLKKKLHL---------SNCVAIH  148 (279)
T ss_dssp             TCSC--HHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCH------HHHHHHHHHHHHHCCT---------TTHHHHH
T ss_pred             CCCC--HHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcH------HHHHHHHHHHHHcCCc---------chHHHHH
Confidence             455  999999999999999999999999999999999996      5999999999998876         5788888


Q ss_pred             hhhHhhc---hHHHHHHHHHHHhhhhccCcccccCCCchhhhhhccccccccccCCcCCcchhhhhhccCChHHHHHHHH
Q 042001          159 PSTEELL---IVSRCIESLAFMACMEILDPERRREKPVVTLEALTSQAWCCERVKGIVSQELWIKDLLALPFGFFRRIIG  235 (670)
Q Consensus       159 ~~Ae~l~---Iv~RCidsLA~kAc~e~~~p~~~~~~P~~~~~~~~~~~~s~~~~~~~~~~dWW~eDL~~L~~dlf~rvI~  235 (670)
                      .+|+.++   +...|.+-|+..... +                                  +--++...||.+....++.
T Consensus       149 ~~A~~~~~~~L~~~~~~~i~~~f~~-v----------------------------------~~~~~f~~L~~~~l~~lL~  193 (279)
T 3i3n_A          149 SLAHMYTLSQLALKAADMIRRNFHK-V----------------------------------IQDEEFYTLPFHLIRDWLS  193 (279)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTHHH-H----------------------------------TTSSGGGGSCHHHHHHHHT
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHH-H----------------------------------hcCcChhcCCHHHHHHHhc
Confidence            8888876   455555555422110 0                                  0013566788888777765


Q ss_pred             HHHHcCCC-CcchhHHHHHHHHHhhccccccccccCCCCCCCCccccccchhHHHHHHhcCCccccCCCcccHHHHHHHH
Q 042001          236 SLRRQGMK-EKYVNPIIVFYANKWLLYKKTRQFWENSDDKSGDKDTNSKCSEILQGILDLLPLQEKASRVIPVGFYFALL  314 (670)
Q Consensus       236 am~~kg~~-~~~I~~~l~~YA~kwl~~~~~~~~~~~s~~~~~~~~~~~k~r~lLEtiV~lLP~e~k~~~~vsc~FLf~LL  314 (670)
                      .-.- .+. +..|-.+    +.+|+-....                  ..+..+..+...+-.     +.+|..+|..++
T Consensus       194 ~d~L-~v~sE~~vf~a----v~~W~~~~~~------------------~r~~~~~~ll~~VRf-----~l~~~~~L~~~v  245 (279)
T 3i3n_A          194 DLEI-TVDSEEVLFET----VLKWVQRNAE------------------ERERYFEELFKLLRL-----SQMKPTYLTRHV  245 (279)
T ss_dssp             CSSC-CCSCHHHHHHH----HHHHHHTTHH------------------HHTTTHHHHHTTSCG-----GGSCHHHHHHTT
T ss_pred             CcCC-CCCCHHHHHHH----HHHHHHcCHH------------------HHHHHHHHHHHhcCC-----CCCCHHHHHHHh
Confidence            4111 122 3334444    4566632100                  012334455554422     468899999999


Q ss_pred             HHHHhcCCCHHHHHHHHH
Q 042001          315 SRSLEVGLRSDSRAKLQE  332 (670)
Q Consensus       315 r~A~~l~as~~cr~~LE~  332 (670)
                      +..-.+..++.|+.-|..
T Consensus       246 ~~~~l~~~~~~c~~~l~e  263 (279)
T 3i3n_A          246 KPERLVANNEVCVKLVAD  263 (279)
T ss_dssp             TTSHHHHTCHHHHHHHHH
T ss_pred             hccchhcCCHHHHHHHHH
Confidence            888788888999877654
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 670
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-06
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 2e-05
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 42  IRVRVGNRTFNLHKFPLFSKSGYFKKRLNESNEYELPQHFPGGPETFEMIVLFIYGSSTL 101
           + + V ++ F+ H+  L   S  F+   + ++++         P+TF+ I+ + Y ++  
Sbjct: 31  VVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLS--PKTFQQILEYAYTATLQ 88

Query: 102 IDPFNVTALRCAAEFLEMTEEYCSGNLCERF 132
               ++  L  AAE LE+         C + 
Sbjct: 89  AKAEDLDDLLYAAEILEIEYLE---EQCLKM 116
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query670
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.88
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.83
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 96.9
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 96.82
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.2
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.17
d1t1da_100 Shaker potassium channel {California sea hare (Apl 95.11
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 91.09
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 84.97
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.9e-23  Score=185.80  Aligned_cols=113  Identities=24%  Similarity=0.344  Sum_probs=103.4

Q ss_pred             CCCCccchH-HHHHHhHhhhhhcCCCeeEEEEECCeEEeeccchhcccchHHHhhhc-CCCeEEeCCCCCCCHHHHHHHH
Q 042001           15 PFSSPNISA-LLKIKIVSWSQETGLPVSIRVRVGNRTFNLHKFPLFSKSGYFKKRLN-ESNEYELPQHFPGGPETFEMIV   92 (670)
Q Consensus        15 ~~ss~~~~~-ll~~r~~~w~r~~g~~~DV~V~Vg~~~F~lHK~vLas~S~YFr~lfs-~~~~I~L~~d~PGGaeaFElv~   92 (670)
                      -|.+|+|+. +++  ..+-+|.+|.+|||+|.|+|++|++||.+|+++|+||++||+ +..+|+++ +++  +++|+.++
T Consensus         5 ~~~~~~h~~~ll~--~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~~~i~~~-~v~--~~~f~~ll   79 (121)
T d1buoa_           5 QLQNPSHPTGLLC--KANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLD-FLS--PKTFQQIL   79 (121)
T ss_dssp             CCCCTTHHHHHHH--HHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCSEEEEC-SSC--HHHHHHHH
T ss_pred             EEcCCchHHHHHH--HHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCccceeecC-CCC--HHHHHHHH
Confidence            467888888 555  456689999999999999999999999999999999999995 56889997 898  99999999


Q ss_pred             HHHhcCccccccchHhhHHHHHhhcccccccccCcHHHHHHHHHHH
Q 042001           93 LFIYGSSTLIDPFNVTALRCAAEFLEMTEEYCSGNLCERFDLYLNQ  138 (670)
Q Consensus        93 ~FcYg~~i~It~~NV~~L~cAAe~LqMte~~~~~nL~~~ce~FL~~  138 (670)
                      +|+|||++.++++||..|+.||++|+|+      .|.+.|++||+.
T Consensus        80 ~~~Ytg~i~l~~~~v~~ll~~A~~l~~~------~L~~~C~~~L~~  119 (121)
T d1buoa_          80 EYAYTATLQAKAEDLDDLLYAAEILEIE------YLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHSCCCCCGGGHHHHHHHHHHHTCH------HHHHHHHHHHHH
T ss_pred             HheEccccCCcHHHHHHHHHHHHHhCCH------HHHHHHHHHHHh
Confidence            9999999999999999999999999996      499999999976
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure