Citrus Sinensis ID: 042002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPPIPADQVKPWVENDYHG
Secondary Structure (PSIPRED)
ccccEEEEcccccccccccEEEEcccccHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccEEEEccccHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccEEEEEEEcEEEEEEcccccccccccccccccHHHccccccccccc
Coil and Loop (DISEMBL)
mdryqrvekpkaetpineneirITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGlhqntaigstditdmwepleegllplettrHVSVITVTLSkkeldtsstgyqppipadqvkpwvendyhg
Flexible Loop (DISEMBL)
mdryqrvekpkaetpineneirittqgrmRNYITYATTllqekgsnEISLKAMGRAINKTVMIAELIKRRIVGlhqntaigstditdMWEPLEEGLLPLETTRHVSVITVTlskkeldtsstgyqppipadqvkpwVENDYHG
Low Complexity Region (SEG)
MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWepleegllpleTTRHVSVITVTLSKKELDTSSTGYQPPIPADQVKPWVENDYHG
Disordered region (IsUnstruct)
********************IRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLS******************************
Disordered Region (DISOPRED)
**RYQRV************EIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPPIPADQ***********
Disordered Region (DISEMBL)
************ETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPPIPADQVKPWVENDYHG
Disordered Region (DISPRO)
**RYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPPIPADQVKPWV******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPPIPADQVKPWVENDYHG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q99JH1	163	Ribonuclease P protein su	yes	no	0.888	0.779	0.345	2e-16
Q8N5L8	163	Ribonuclease P protein su	yes	no	0.825	0.723	0.358	9e-16
Q2KIR4	163	Ribonuclease P protein su	yes	no	0.825	0.723	0.341	6e-14
Q9BUL9	199	Ribonuclease P protein su	no	no	0.762	0.547	0.336	2e-13
Q91WE3	199	Ribonuclease P protein su	no	no	0.748	0.537	0.307	3e-12
Q5PPN2	199	Ribonuclease P protein su	no	no	0.748	0.537	0.307	3e-12

>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 9/136 (6%)

Query: 1   MDRYQRV-------EKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAM 53
           M++Y+R          P  + P +  E+R+    ++RN +  A   L+   +  +     
Sbjct: 1   MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60

Query: 54  GRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPL--EEGLLPLETTRHVSVITVT 111
           GRA  K V  AE++KRR+ GLHQ T +      D W P   + GL PL   RHV  + V 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query: 112 LSKKELDTSSTGYQPP 127
           LS+  LD S  GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136

May be a component of ribonuclease P or MRP.
Mus musculus (taxid: 10090)

>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 10  PKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69
           P  + P +  E+R+    ++RN +  A   L+   +  +     GRA  K V  AE++KR
Sbjct: 17  PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query: 70  RIVGLHQNTAIGSTDITDMWEPL--EEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPP 127
           R+ GLHQ T +      D W P   + GL PL   RHV  + V LS+  LD +  GYQPP
Sbjct: 77  RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

May be a component of ribonuclease P or MRP.

Homo sapiens (taxid: 9606)

>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 10  PKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69
           P  + P +  E+R+    ++RN +  A   L+   +  +     GRA  K V  AE++KR
Sbjct: 17  PMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query: 70  RIVGLHQNTAIGSTDITDMWEPL--EEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPP 127
           R+ GL+Q T +      D W P   + GL PL    HV  + V LS+  LD +  GYQPP
Sbjct: 77  RVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136

May be a component of ribonuclease P or MRP.

Bos taurus (taxid: 9913)

>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 21  IRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAI 80
           +R+    ++RN + +AT  + +  +  I     GRA  KTV  AE++KRR+ GLHQ T +
Sbjct: 38  MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSTDITDMWEPLE----EGLLPLETTRHVSV------ITVTLSKKELDTSSTGYQPPIP 129
               + ++W+ L     +G  P E    +SV      + + LSK  LD    GYQPP P
Sbjct: 98  RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 21  IRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAI 80
           +R+    ++RN + +AT  + +  +  I     GRA  KTV  AE++KRR+ GLHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSTDITDMWEPL----------EEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPP 127
               + ++W+ L           +    L   ++V  + + LSK  LD    GYQPP
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 21  IRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAI 80
           +R+    ++RN + +AT  + +  +  I     GRA  KTV  AE++KRR+ GLHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSTDITDMWEPL----------EEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPP 127
               + ++W+ L           +    L   ++V  + + LSK  LD    GYQPP
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
225460634	259	PREDICTED: uncharacterized protein LOC10	1.0	0.552	0.895	4e-70
224062870	249	predicted protein [Populus trichocarpa]	0.986	0.566	0.921	3e-69
296082548	282	unnamed protein product [Vitis vinifera]	1.0	0.507	0.902	6e-69
225438471	255	PREDICTED: uncharacterized protein LOC10	1.0	0.560	0.902	7e-69
224085141	174	predicted protein [Populus trichocarpa]	1.0	0.821	0.895	7e-68
356509014	261	PREDICTED: uncharacterized protein LOC10	1.0	0.547	0.881	9e-67
357464479	351	Ribonuclease P protein subunit p25 [Medi	0.832	0.339	0.874	2e-66
449448448	254	PREDICTED: ribonuclease P protein subuni	1.0	0.562	0.881	2e-66
356516323	241	PREDICTED: alba-like protein C9orf23 hom	1.0	0.593	0.881	1e-65
168030026	239	predicted protein [Physcomitrella patens	1.0	0.598	0.846	1e-65

>gi|225460634|ref|XP_002264932.1| PREDICTED: uncharacterized protein LOC100265751 [Vitis vinifera] gi|296081198|emb|CBI18224.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/143 (89%), Positives = 135/143 (94%)

Query: 1   MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
           MDRYQRVEKP+ ETPINENEIRIT QGRMRNYITYATTLLQ+KGS+EI+LKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRPETPINENEIRITAQGRMRNYITYATTLLQDKGSDEIALKAMGRAINKT 60

Query: 61  VMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120
           VMIAELIKRRI GLHQNT+IGSTDITDMWEPLEEGLLPLETTRHVSVI +TLSKKELD S
Sbjct: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSVIAITLSKKELDIS 120

Query: 121 STGYQPPIPADQVKPWVENDYHG 143
           STGYQPPIPADQV+PW E DY G
Sbjct: 121 STGYQPPIPADQVRPWTEYDYEG 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062870|ref|XP_002300911.1| predicted protein [Populus trichocarpa] gi|222842637|gb|EEE80184.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/141 (92%), Positives = 133/141 (94%)

Query: 1   MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
           MDRYQRVEKP+ ETPINENEIRITTQGRMRNYITYATTL QEKGS+EISLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRNETPINENEIRITTQGRMRNYITYATTLFQEKGSDEISLKAMGRAINKT 60

Query: 61  VMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120
           VMIAELIKRRI GLHQNT+IGSTDITD WEPLEEGLLPLETTRHVSVITVTLSKKELDTS
Sbjct: 61  VMIAELIKRRIAGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120

Query: 121 STGYQPPIPADQVKPWVENDY 141
           STGYQ PIPADQVKP  E DY
Sbjct: 121 STGYQSPIPADQVKPLAEYDY 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082548|emb|CBI21553.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 129/143 (90%), Positives = 136/143 (95%)

Query: 1   MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
           MDRYQRVEKP+ ETPINENEIRITTQGRMRNYITYATTLLQEKGSNEI LKAMGRAINKT
Sbjct: 28  MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 87

Query: 61  VMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120
           VMI+ELIKRRIVGLHQNT+IGSTDITDMWEPLE+GLLPLETTRHVS+IT+TLSKKELDTS
Sbjct: 88  VMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITLSKKELDTS 147

Query: 121 STGYQPPIPADQVKPWVENDYHG 143
           STGYQPPIP DQVKP  E +Y G
Sbjct: 148 STGYQPPIPVDQVKPLNELEYEG 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438471|ref|XP_002277849.1| PREDICTED: uncharacterized protein LOC100254260 [Vitis vinifera] gi|147856397|emb|CAN82465.1| hypothetical protein VITISV_002662 [Vitis vinifera]

 Score =  265 bits (676), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 129/143 (90%), Positives = 136/143 (95%)

Query: 1   MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
           MDRYQRVEKP+ ETPINENEIRITTQGRMRNYITYATTLLQEKGSNEI LKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120
           VMI+ELIKRRIVGLHQNT+IGSTDITDMWEPLE+GLLPLETTRHVS+IT+TLSKKELDTS
Sbjct: 61  VMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPIPADQVKPWVENDYHG 143
           STGYQPPIP DQVKP  E +Y G
Sbjct: 121 STGYQPPIPVDQVKPLNELEYEG 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085141|ref|XP_002307507.1| predicted protein [Populus trichocarpa] gi|222856956|gb|EEE94503.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (667), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 128/143 (89%), Positives = 132/143 (92%)

Query: 1   MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
           MDRYQRVEKP+ ETPINENEIRITTQGRMRNYITYATTL  EKGS+ ISLKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLFLEKGSDGISLKAMGRAINKT 60

Query: 61  VMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120
           VMIAELIKRRI GLHQNT+IGSTDITD WEPLEEGLLPLETTRHVSVIT+TLSKKELDTS
Sbjct: 61  VMIAELIKRRIAGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSVITITLSKKELDTS 120

Query: 121 STGYQPPIPADQVKPWVENDYHG 143
           STGYQ PIPADQVKP  E DY G
Sbjct: 121 STGYQSPIPADQVKPLAEYDYEG 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509014|ref|XP_003523247.1| PREDICTED: uncharacterized protein LOC100792158 [Glycine max]

 Score =  257 bits (657), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 126/143 (88%), Positives = 133/143 (93%)

Query: 1   MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
           MDRYQRVEKPKAE+PINENEIR+T+QGR RNYITYATTLLQEKGS+EI LKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKAESPINENEIRVTSQGRTRNYITYATTLLQEKGSSEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120
           VMIAELIKRRIVGLHQNT IGSTDITD WEPLEEGLLPLETTRHVS+IT+TLSKKELDTS
Sbjct: 61  VMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPIPADQVKPWVENDYHG 143
           STGYQPP+P DQVKP  E D  G
Sbjct: 121 STGYQPPLPVDQVKPLNEYDEEG 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464479|ref|XP_003602521.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491569|gb|AES72772.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 133/143 (93%)

Query: 1   MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
           MDRYQRVEKPKA++PINENEIRITTQGRMRNYITYATTL QEKGS+EI +KAMGRAINKT
Sbjct: 107 MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVVKAMGRAINKT 166

Query: 61  VMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120
           VMI ELIKRRIVGLHQNT IGSTDITD WEPLEEGLLPLETTRHVS+IT+TLSKKELDTS
Sbjct: 167 VMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 226

Query: 121 STGYQPPIPADQVKPWVENDYHG 143
           STGYQPP+PADQVKP  E +  G
Sbjct: 227 STGYQPPLPADQVKPLNEYEDEG 249

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448448|ref|XP_004141978.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus] gi|449497693|ref|XP_004160481.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like [Cucumis sativus]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 135/144 (93%), Gaps = 1/144 (0%)

Query: 1   MDRYQRVEKPKAE-TPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINK 59
           MDRYQRVEKPK+E TPINENEIRITTQGRMRNYITYATTLLQEKGSNEI +K MGRAINK
Sbjct: 1   MDRYQRVEKPKSENTPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVVKGMGRAINK 60

Query: 60  TVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDT 119
           TVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVS++++TLSKKELDT
Sbjct: 61  TVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSMVSITLSKKELDT 120

Query: 120 SSTGYQPPIPADQVKPWVENDYHG 143
           SSTGYQ P+P DQVKPW E +  G
Sbjct: 121 SSTGYQSPLPVDQVKPWNEFEDEG 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516323|ref|XP_003526845.1| PREDICTED: alba-like protein C9orf23 homolog [Glycine max]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/143 (88%), Positives = 132/143 (92%)

Query: 1   MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
           MDRYQRVEKPKAETPINENEIR+TTQGRMRNYITYATTLLQEKGS+EI LKAMGRAINKT
Sbjct: 1   MDRYQRVEKPKAETPINENEIRVTTQGRMRNYITYATTLLQEKGSSEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120
           VMIAELIKRRIVGLHQNT IGSTDITD WEPLEEGLLPLETTRHVS+IT+TLSKKELDTS
Sbjct: 61  VMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 STGYQPPIPADQVKPWVENDYHG 143
           S GYQ P+P DQVKP  E +  G
Sbjct: 121 SAGYQHPLPVDQVKPLNEYEEEG 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168030026|ref|XP_001767525.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681231|gb|EDQ67660.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/143 (84%), Positives = 133/143 (93%)

Query: 1   MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
           MDRYQRVEKP+ E PINENEIRITTQG+MRNYITYATTLLQEKG++EI LKAMGRAINKT
Sbjct: 1   MDRYQRVEKPRPEIPINENEIRITTQGKMRNYITYATTLLQEKGASEIVLKAMGRAINKT 60

Query: 61  VMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120
           V IAE+IKRRI GLHQNT+IGSTDITD+WEPLEEGLLPLETTRHVS+IT+TLS KEL+TS
Sbjct: 61  VTIAEIIKRRIAGLHQNTSIGSTDITDLWEPLEEGLLPLETTRHVSMITITLSTKELETS 120

Query: 121 STGYQPPIPADQVKPWVENDYHG 143
           STGYQPP+PADQVKP  E +Y G
Sbjct: 121 STGYQPPLPADQVKPLAEFEYDG 143

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2198551	315	AT1G20220 [Arabidopsis thalian	1.0	0.453	0.685	8.8e-47
TAIR|locus:2204400	350	AT1G76010 [Arabidopsis thalian	1.0	0.408	0.692	8.8e-47
TAIR|locus:2077547	405	AT3G07030 [Arabidopsis thalian	0.944	0.333	0.592	2.4e-37
DICTYBASE|DDB_G0281409	369	drpp25 "RNase MRP protein subu	0.972	0.376	0.358	3.8e-16
UNIPROTKB|E1BQE8	164	RPP25 "Uncharacterized protein	0.916	0.798	0.295	7.9e-14
RGD|1306576	163	Rpp25l "ribonuclease P/MRP 25	0.888	0.779	0.330	2.7e-13
MGI|MGI:1917211	163	Rpp25l "ribonuclease P/MRP 25	0.888	0.779	0.330	3.4e-13
UNIPROTKB|Q8N5L8	163	RPP25L "Ribonuclease P protein	0.825	0.723	0.325	1.2e-12
UNIPROTKB|F1SEB9	163	RPP25L "Uncharacterized protei	0.825	0.723	0.325	1.2e-12
UNIPROTKB|E2R227	163	LOC486757 "Uncharacterized pro	0.825	0.723	0.325	1.5e-12

TAIR|locus:2198551 AT1G20220 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 98/143 (68%), Positives = 110/143 (76%)

Query:     1 MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
             MD+YQRVEKPKA+TPI ENEIRIT+ GR RNYITYA  LLQE  SNE+  KAMGRAINK+
Sbjct:     1 MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query:    61 VMIAELIKRRIVGLHQNTAIGSTDITDMWXXXXXXXXXXXTTRHVSVITVTLSKKELDTS 120
             V I ELIKRRI GLHQ T+IGSTDITD W           TTRHVS+IT+TLSK++L+TS
Sbjct:    61 VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query:   121 STGYQPPIPADQVKPWVENDYHG 143
             S GYQ PIP + VKP  E DY G
Sbjct:   121 SVGYQCPIPIEMVKPLAEIDYEG 143

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2204400 AT1G76010 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 99/143 (69%), Positives = 111/143 (77%)

Query:     1 MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
             MD+YQRV KPKA+TPI+ NEIRIT+QGR RNYITYA TLLQ+KGS E+  KAMGRAINKT
Sbjct:     1 MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query:    61 VMIAELIKRRIVGLHQNTAIGSTDITDMWXXXXXXXXXXXTTRHVSVITVTLSKKELDTS 120
             V I ELIKRRI  LHQNT+IGSTDITD W           TTRHVS+IT+TLSK EL+TS
Sbjct:    61 VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query:   121 STGYQPPIPADQVKPWVENDYHG 143
             S GYQ PIP + VKP  + DY G
Sbjct:   121 SVGYQCPIPIELVKPMGDIDYEG 143

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2077547 AT3G07030 [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 80/135 (59%), Positives = 100/135 (74%)

Query:     1 MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKT 60
             MDRYQRV KPK E+PINENEIRIT++G +RNYI+YAT+LLQEK   +I LKAMG+AI+KT
Sbjct:     1 MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query:    61 VMIAELIKRRIVGLHQNTAIGSTDITDMWXXXXXXXXXXXTTRHVSVITVTLSKKELDTS 120
             V I+E++K +I GLHQ+ AI S  ITD+W            TRHVS+I++TLS  EL+  
Sbjct:    61 VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query:   121 STGYQPPIPADQVKP 135
             S GYQ P  +DQ KP
Sbjct:   121 SPGYQAPAQSDQSKP 135

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0281409 drpp25 "RNase MRP protein subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 205 (77.2 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 52/145 (35%), Positives = 77/145 (53%)

Query:     1 MDRYQRVEKPKAETPINENEIRIT-TQGRMRNYITYATTLLQEKGSNEISLKAMG-RAIN 58
             MD+Y RV +   +     NE+RI     ++ + I Y   L   K  + I +KA+G + I+
Sbjct:     1 MDKYYRVPRTY-DNDTEANEVRIGGVHSQVSSSIEYGLNLFN-KPHDSIIVKAIGSKMIS 58

Query:    59 KTVMIAELIKRRIVGLHQNTAIGSTDITDMWXXXXXXXXXXXTTRHVSVITVTLSKKELD 118
             K +  AE+IK R+ GLHQ T IG+T+I   +            ++  + I +TLSK  LD
Sbjct:    59 KAIFTAEIIKLRVPGLHQITEIGTTEIVTQYMPKEEGLDKVEISKKSAFIKITLSKTPLD 118

Query:   119 TSSTGYQPPIPAD--QVKPWVENDY 141
             T++ GYQPP+P    Q KP    DY
Sbjct:   119 TTNPGYQPPLPESETQKKPTRPRDY 143

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BQE8 RPP25 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 42/142 (29%), Positives = 75/142 (52%)

Query:     1 MDRYQRVEKPKAETPIN-EN------EIRITTQGRMRNYITYATTLLQEKGSNEISLKAM 53
             M+ +++V   + E+P+   N      E+++    ++RN +++A   ++ KGS +I     
Sbjct:     1 MENFRKVRTSEEESPLPFPNLPPGVVEMKVKEGSKIRNLMSFAMAQMELKGSRQIVFSGC 60

Query:    54 GRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWXXXXXX--XXXXXTTRHVSV--IT 109
             GRA+ KT+   E++KR++ GLHQ T +    + ++W              T H +V  I 
Sbjct:    61 GRAVTKTITCVEIMKRKLGGLHQVTKVRYKTLLEVWENQDPLPGGAAQNLTVHKNVPSIC 120

Query:   110 VTLSKKELDTSSTGYQPPIPAD 131
             + LS+  LD + TGYQPP P +
Sbjct:   121 ILLSRDPLDPNQTGYQPPEPRE 142

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

RGD|1306576 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 45/136 (33%), Positives = 64/136 (47%)

Query:     1 MDRYQR---VEKPKA----ETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAM 53
             M+ Y+R   VE P +    + P +  E+R+    ++RN +  A   L+   +  +     
Sbjct:     1 MEHYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALARLEGGSTRHVVFSGS 60

Query:    54 GRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWXXXXXXXXXXXTT--RHVSVITVT 111
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + V 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:   112 LSKKELDTSSTGYQPP 127
             LS+  LD S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1917211 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 45/136 (33%), Positives = 65/136 (47%)

Query:     1 MDRYQR---VEKPKA----ETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAM 53
             M++Y+R   VE P +    + P +  E+R+    ++RN +  A   L+   +  +     
Sbjct:     1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60

Query:    54 GRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWXXXXXXXXXXXTT--RHVSVITVT 111
             GRA  K V  AE++KRR+ GLHQ T +      D W            T  RHV  + V 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:   112 LSKKELDTSSTGYQPP 127
             LS+  LD S  GYQPP
Sbjct:   121 LSRDPLDPSECGYQPP 136

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8N5L8 RPP25L "Ribonuclease P protein subunit p25-like protein" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/120 (32%), Positives = 56/120 (46%)

Query:    10 PKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69
             P  + P +  E+R+    ++RN +  A   L+   +  +     GRA  K V  AE++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIVGLHQNTAIGSTDITDMWXXXXXXXXXXXTT--RHVSVITVTLSKKELDTSSTGYQPP 127
             R+ GLHQ T +      D W            T  RHV  + V LS+  LD +  GYQPP
Sbjct:    77 RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SEB9 RPP25L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/120 (32%), Positives = 56/120 (46%)

Query:    10 PKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69
             P  + P +  E+R+    ++RN +  A   L+   +  +     GRA  K V  AE++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIVGLHQNTAIGSTDITDMWXXXXXXXXXXXTT--RHVSVITVTLSKKELDTSSTGYQPP 127
             R+ GLHQ T +      D W            T  RHV  + V LS+  LD +  GYQPP
Sbjct:    77 RVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R227 LOC486757 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 39/120 (32%), Positives = 56/120 (46%)

Query:    10 PKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKR 69
             P  + P +  E+R+    ++RN +  A   L+   +  +     GRA  K V  AE++KR
Sbjct:    17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76

Query:    70 RIVGLHQNTAIGSTDITDMWXXXXXXXXXXXTT--RHVSVITVTLSKKELDTSSTGYQPP 127
             R+ GLHQ T +      D W            T  RHV  + V LS+  LD +  GYQPP
Sbjct:    77 RVPGLHQLTKLHFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam01918	67	pfam01918, Alba, Alba	1e-18
PRK04015	91	PRK04015, PRK04015, DNA/RNA-binding protein albA;	7e-08
COG1581	91	COG1581, Ssh10b, Archaeal DNA-binding protein [Tra	9e-07
pfam12328	108	pfam12328, Rpp20, Rpp20 subunit of nuclear RNase M	3e-05
TIGR00285	87	TIGR00285, TIGR00285, DNA-binding protein Alba	1e-04

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 74.2 bits (183), Expect = 1e-18
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 19 NEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI-VGLHQN 77
          N I ++++  + NY+  A  LL+  G++E+ LK +GRAI+K V +AE++KRR   GLHQ 
Sbjct: 1  NVIYVSSKSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQV 60

Query: 78 TAIGST 83
            I ST
Sbjct: 61 NVITST 66

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

>gnl|CDD|235199 PRK04015, PRK04015, DNA/RNA-binding protein albA; Provisional

 Score = 46.9 bits (112), Expect = 7e-08
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 15  PINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGL 74
              EN + +  +  M NY+    T   + G+ E+ +KA GRAI+K V +AE+++ R +  
Sbjct: 1   MAEENVVLVGKKPVM-NYVLAVLTQFNQ-GAKEVVIKARGRAISKAVDVAEIVRNRFL-- 56

Query: 75  HQNTAIGSTDI-TDMWEPLEEGLLPLETTRHVSVITVTLSKK 115
             +  I    I T+     E+G        +VS I + L KK
Sbjct: 57  -PDVEIKEIKIGTEEVTS-EDG-----RESNVSTIEIVLEKK 91

Length = 91

>gnl|CDD|224497 COG1581, Ssh10b, Archaeal DNA-binding protein [Transcription]

 Score = 43.9 bits (104), Expect = 9e-07
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 14/100 (14%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQ- 76
           EN + +  +  M NY+    T   E G++E+ +KA GRAI+K V +AE+++ R +   Q 
Sbjct: 4   ENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIPDVQI 61

Query: 77  -NTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKK 115
            +  IG+ ++       E+G      TR+VS I + L+KK
Sbjct: 62  KDIKIGTEEL-----EGEDG-----RTRNVSTIEIVLAKK 91

Length = 91

>gnl|CDD|221532 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 41  QEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITD---MWEPLEEGLL 97
           +     E+ +K MG+AI K + +A   +R       +   G+ ++ D     E  ++   
Sbjct: 36  EGLKLEEVVVKGMGKAIEKALSLALHFQREK-NYKVDVRTGTVEVVDEIVEDEDDDDDEE 94

Query: 98  PLETTRHVSVITV 110
           P    R VS + V
Sbjct: 95  PETRKRTVSAVEV 107

The nuclear RNase P of Saccharomyces cerevisiae is made up of at least nine protein subunits; Pop1, Pop3, Pop4, Pop5, Pop6, Pop7, Pop8, Rpr2 and Rpp1. Many of these subunits seem to be present also in the RNase MRP, with the exception of Rpr2 (Rpp21) which is unique to RNase P. Human nuclear RNase P and MRP appear to contain at least 10 protein subunits, Rpp14, Rpp20, Rpp21, Rpp25, Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and hPop5, although there is recent evidence that not all of these subunits are shared between P and MRP. Archaeal RNase P has at least four protein subunits homologous to eukaryotic RNase P/MRP proteins. In the yeast RNase P, Pop6 and Pop7 (the Rpp20 homologue) interact with each other and they are both interaction partners of Pop4; in the human MRP Rpp25 and Rpp20 interact with each other and Rpp25 binds to Rpp29 (Pop4). Length = 108

>gnl|CDD|129386 TIGR00285, TIGR00285, DNA-binding protein Alba

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQN 77
           EN + I  +  M NY+    T L   G++E+ +KA GRAI++ V +AE+++ R       
Sbjct: 1   ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRF------ 52

Query: 78  TAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSK 114
             I    I  +    EE         +VS I + L+K
Sbjct: 53  --IPDIKIKKIKIGTEEIKSEQGREVNVSTIEIVLAK 87

Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenace of chromatin architecture and thereby in transcription repression. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity [DNA metabolism, Chromosome-associated proteins]. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG2567	179	consensus Uncharacterized conserved protein [Funct	100.0
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.89
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.87
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.87
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.76
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	99.49

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.4e-45  Score=276.20  Aligned_cols=142  Identities=44%  Similarity=0.697  Sum_probs=139.0

Q ss_pred             CCCceecccCCCCCCCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEE
Q 042002            1 MDRYQRVEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAI   80 (143)
Q Consensus         1 m~~y~rv~~~~~~~~~~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i   80 (143)
                      ||.|.++.+||++.|++.|+|||+.+++++||+.||..+|++++.+.|||+|+|+||.|+|+||||||||++||||.|++
T Consensus         1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l   80 (179)
T KOG2567|consen    1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRL   80 (179)
T ss_pred             CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhcee
Confidence            89999999999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             EEEEeecceeecccCCccceeeeeeeEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q 042002           81 GSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKELDTSSTGYQPPIPADQVKPWVENDYH  142 (143)
Q Consensus        81 ~~v~i~d~~~p~~eg~~~~~~~R~vs~I~I~Lsk~~ld~~~~GyQ~P~~~~~v~~~~~~~~~  142 (143)
                      .++.+.|.|+|.++||+.+...|+||.|+|+||+++||++++|||+|.|.........-||.
T Consensus        81 ~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~~p~p~~~~~~p~~  142 (179)
T KOG2567|consen   81 RYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNPQPHPRSQPRHPYS  142 (179)
T ss_pred             eeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCCCCCCCCcccCCcc
Confidence            99999999999999999999999999999999999999999999999999998888888886

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.89  E-value=2.8e-22  Score=139.12  Aligned_cols=90  Identities=32%  Similarity=0.446  Sum_probs=73.8

Q ss_pred             CCCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccC
Q 042002           16 INENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEG   95 (143)
Q Consensus        16 ~~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg   95 (143)
                      ..+|+|+|++++.+ +|+.+++.+|++ |.++|+|+|+|+||+|||+|||+||+||.+.+   ++..+.+..+-...++|
T Consensus         2 ~~en~i~Ig~kpvm-nYV~~~~~~l~~-g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v---~v~~I~i~se~i~~~~g   76 (91)
T PRK04015          2 AEENVVLVGKKPVM-NYVLAVLTQFNQ-GAKEVVIKARGRAISKAVDVAEIVRNRFLPDV---EIKEIKIGTEEVTSEDG   76 (91)
T ss_pred             CCCCEEEEcCCcHH-HHHHHHHHHHhC-CCCeEEEEEeccccchhhhHHHHHHHhccCCe---EEEEEEeccEEeecCCC
Confidence            46799999999755 999999999994 89999999999999999999999999984334   44444554444334566


Q ss_pred             CccceeeeeeeEEEEEEecC
Q 042002           96 LLPLETTRHVSVITVTLSKK  115 (143)
Q Consensus        96 ~~~~~~~R~vs~I~I~Lsk~  115 (143)
                           ..|+||+|+|.|++.
T Consensus        77 -----~~~~VS~IEI~l~k~   91 (91)
T PRK04015         77 -----RESNVSTIEIVLEKK   91 (91)
T ss_pred             -----cEEEEEEEEEEEecC
Confidence                 689999999999873

>TIGR00285 DNA-binding protein Alba

Probab=99.87  E-value=2.4e-21  Score=133.22  Aligned_cols=87  Identities=33%  Similarity=0.447  Sum_probs=75.2

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccCCc
Q 042002           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLL   97 (143)
Q Consensus        18 ~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg~~   97 (143)
                      +|.|+|++|+-| +||.+++.+|++ |.++|+|+|+|+||+|||++||+||+||...+   ++..+++..+-.+.++|  
T Consensus         1 e~~i~vG~KPvm-nYVlavlt~fn~-g~~eV~iKarG~aIskAVdvaeiik~r~~~~v---~v~~I~i~te~~~~~~G--   73 (87)
T TIGR00285         1 ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRFIPDI---KIKKIKIGTEEIKSEQG--   73 (87)
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHhC-CCCeEEEEEecchhhhHHHHHHHHHHhccCCc---eEEEEEeccEEeecCCC--
Confidence            489999999977 999999999996 89999999999999999999999999985433   66666666666666777  


Q ss_pred             cceeeeeeeEEEEEEec
Q 042002           98 PLETTRHVSVITVTLSK  114 (143)
Q Consensus        98 ~~~~~R~vs~I~I~Lsk  114 (143)
                         +.|+||+|+|.|.+
T Consensus        74 ---~~~~VStIEI~l~~   87 (87)
T TIGR00285        74 ---REVNVSTIEIVLAK   87 (87)
T ss_pred             ---ceeeEEEEEEEEeC
Confidence               68899999999975

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.87  E-value=3e-21  Score=132.00  Aligned_cols=88  Identities=35%  Similarity=0.494  Sum_probs=78.0

Q ss_pred             CCCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCceeEEEEEEEEeecceeeccc
Q 042002           16 INENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI-VGLHQNTAIGSTDITDMWEPLEE   94 (143)
Q Consensus        16 ~~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~-~gL~q~~~i~~v~i~d~~~p~~e   94 (143)
                      ..+|.|+|++|+-+ |||..++.+|++ |.++|+|+|+|+||||||++||+++.|| |++    ++..+++..+-...++
T Consensus         2 ~~envV~vG~KPvm-NYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivRnrf~p~v----~ik~Iki~se~~~~~~   75 (91)
T COG1581           2 AEENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIPDV----QIKDIKIGTEELEGED   75 (91)
T ss_pred             CCccEEEEcCcchH-HHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHHHhcCCCc----eEEEEEecceeeecCC
Confidence            35699999999988 999999999997 8999999999999999999999999998 655    7777777776666667


Q ss_pred             CCccceeeeeeeEEEEEEec
Q 042002           95 GLLPLETTRHVSVITVTLSK  114 (143)
Q Consensus        95 g~~~~~~~R~vs~I~I~Lsk  114 (143)
                      |     +.++||+|+|.|.+
T Consensus        76 g-----r~~~VS~IeI~L~k   90 (91)
T COG1581          76 G-----RTRNVSTIEIVLAK   90 (91)
T ss_pred             C-----ceeeEEEEEEEEec
Confidence            7     68899999999986

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.76  E-value=8.4e-18  Score=110.92  Aligned_cols=64  Identities=38%  Similarity=0.609  Sum_probs=57.5

Q ss_pred             CeEEEcCCCchhHHHHHHHHHH---hhcCCCeEEEEEcChhHHHHHHHHHHHHHhcC-CceeEEEEEE
Q 042002           19 NEIRITTQGRMRNYITYATTLL---QEKGSNEISLKAMGRAINKTVMIAELIKRRIV-GLHQNTAIGS   82 (143)
Q Consensus        19 n~I~V~~~~~i~~yv~~a~~lL---~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~-gL~q~~~i~~   82 (143)
                      |+|+|++++++.+||.+|+.+|   +..+.++|+|+|+|+||+|||+|||+||+++. ++||++.+..
T Consensus         1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~   68 (70)
T PF01918_consen    1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS   68 (70)
T ss_dssp             SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence            7999999999999999999999   44589999999999999999999999999995 8999988865

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=99.49  E-value=1.9e-13  Score=102.42  Aligned_cols=93  Identities=25%  Similarity=0.364  Sum_probs=67.5

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhc-------------------C------------CCeEEEEEcChhHHHHHHHHHH
Q 042002           18 ENEIRITTQGRMRNYITYATTLLQEK-------------------G------------SNEISLKAMGRAINKTVMIAEL   66 (143)
Q Consensus        18 ~n~I~V~~~~~i~~yv~~a~~lL~~~-------------------~------------~~~Vvi~g~G~AI~kAV~vAEi   66 (143)
                      ++.|||+.+++|-+.|.++.++|..-                   +            ..+|+|+|||+||.||+++|.-
T Consensus         3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~   82 (144)
T PF12328_consen    3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW   82 (144)
T ss_dssp             TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence            58999999999999999999999631                   1            2799999999999999999999


Q ss_pred             HHHhcCCceeEEEEEEEEeecceeecc------------------cCCccceeeeeeeEEEEE
Q 042002           67 IKRRIVGLHQNTAIGSTDITDMWEPLE------------------EGLLPLETTRHVSVITVT  111 (143)
Q Consensus        67 lKrr~~gL~q~~~i~~v~i~d~~~p~~------------------eg~~~~~~~R~vs~I~I~  111 (143)
                      +++.. ++--.++++++.+.|++++.+                  ++.+...+.|.||+|+|.
T Consensus        83 Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv~  144 (144)
T PF12328_consen   83 FQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEVA  144 (144)
T ss_dssp             HHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEEE
T ss_pred             HhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEEC
Confidence            98886 677889999999999999653                  445668899999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
2h9u_A	102	Crystal Structure Of The Archaea Specific Dna Bindi		1e-04
1h0x_A	100	Structure Of Alba: An Archaeal Chromatin Protein Mo		7e-04

>pdb|2H9U|A Chain A, Crystal Structure Of The Archaea Specific Dna Binding Protein Length = 102

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 20  EIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTA 79
           E+RI  +  M NY+    T L E+G+N++ +KA GR IN+ V   E++++R     +N  
Sbjct: 8   EVRIGRKPVM-NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKR---FAKNIE 63
Query: 80  IGSTDITDMWXXXXXXXXXXXTTRHVSVITVTLSK 114
           I    I D              TR VS I + L K
Sbjct: 64  IKDIKI-DSQEIEVQTPEGQTRTRRVSSIEICLEK 97

>pdb|1H0X|A Chain A, Structure Of Alba: An Archaeal Chromatin Protein Modulated By Acetylation Length = 100

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 7  VEKPKAETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAEL 66
          +EK  + TP   N + I  +  M NY+  A TLL + G +EI +KA GRAI+K V   E+
Sbjct: 1  MEKMSSGTPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEI 58
Query: 67 IKRRIV 72
          ++ R +
Sbjct: 59 VRNRFL 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	1e-28
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	6e-23
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	2e-22
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	9e-21
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	4e-19
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	6e-06

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A* Length = 102

 Score =  100 bits (249), Expect = 1e-28
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 14  TPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVG 73
                 E+RI  +  M NY+    T L E+G+N++ +KA GR IN+ V   E++++R   
Sbjct: 2   ACEGAPEVRIGRKPVM-NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAK 60

Query: 74  LHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKE 116
             +   I      D  E   +       TR VS I + L K  
Sbjct: 61  NIEIKDIK----IDSQEIEVQTPEGQTRTRRVSSIEICLEKAG 99

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A Length = 97

 Score = 85.4 bits (211), Expect = 6e-23
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 12  AETPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI 71
           + TP   N + I  +  M NY+  A TLL + G +EI +KA GRAI+K V   E+++ R 
Sbjct: 3   SGTPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF 60

Query: 72  VGLHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKK 115
             L     I    +       ++G         VS I + + KK
Sbjct: 61  --LPDKIEIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIRKK 97

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A* Length = 89

 Score = 83.8 bits (207), Expect = 2e-22
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 16  INENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLH 75
           + E+ + +  +  M NY+    T L E G++E+ +KA GRAI++ V +AE+++ R     
Sbjct: 1   MAEHVVYVGNKPVM-NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FM 55

Query: 76  QNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSK 114
               +    I       E+G        +VS I + L+K
Sbjct: 56  PGVKVKEIKIDTEELESEQG-----RRSNVSTIEIVLAK 89

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 91

 Score = 79.6 bits (196), Expect = 9e-21
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 17  NENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQ 76
            EN + I  +  M NY+    T +   G++E+ LKA G AI++ V +AE+++ R      
Sbjct: 3   EENVVYIGNKPVM-NYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNR---FIP 57

Query: 77  NTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSK 114
           +  I + DI        EG     T  +VS I + L K
Sbjct: 58  DIQIENIDICTEEIIGNEG-----TATNVSAIEIQLRK 90

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1 Length = 87

 Score = 75.3 bits (185), Expect = 4e-19
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQN 77
           +N + I  +  M NY+    T L     +E+ +KA G+AINK V +AE+I+ R     ++
Sbjct: 2   DNVVLIGKKPVM-NYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIRNR---FIKD 55

Query: 78  TAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSK 114
             I   +I        +G        +VS I + L+K
Sbjct: 56  IKIKKIEIGTDKVKNPDG-----REVNVSTIEIVLAK 87

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A Length = 89

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 14  TPINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVG 73
           T      +   T+    +++     L  + G +E+ LK  GR I+K V +   +K R   
Sbjct: 2   TEKLNEIVVRKTKNVE-DHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDR--- 56

Query: 74  LHQNTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKK 115
           L     + +       E  +         R +S I + L + 
Sbjct: 57  LGDGVQLVNVQTGS--EVRD--------RRRISYILLRLKRV 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.95
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.94
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.94
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.94
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.91
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.88
1vm0_A	130	Unknown protein; structural genomics, protein stru	99.8
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	99.79
3iab_A	158	Ribonucleases P/MRP protein subunit POP6; RNAse P,	98.49

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.95  E-value=1.8e-27  Score=167.75  Aligned_cols=93  Identities=33%  Similarity=0.504  Sum_probs=85.2

Q ss_pred             CCeEEEcCCCchhHHHHHHH-HHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeecceeeccc
Q 042002           18 ENEIRITTQGRMRNYITYAT-TLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI-VGLH-QNTAIGSTDITDMWEPLEE   94 (143)
Q Consensus        18 ~n~I~V~~~~~i~~yv~~a~-~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~-~gL~-q~~~i~~v~i~d~~~p~~e   94 (143)
                      +|+|||++++.+ +||.+|+ .+|++ |.++|+|+|+|+||+|||+|||+||+|+ +||| |.++|++..+.|+|+   +
T Consensus         6 ~n~I~V~~k~~~-nyV~~a~~~ll~~-g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~   80 (102)
T 2h9u_A            6 APEVRIGRKPVM-NYVLAILTTLMEQ-GTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E   80 (102)
T ss_dssp             CCEEECCSSCHH-HHHHHHHHHHTST-TCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred             CCEEEEcCCCHH-HHHHHHHHHHHhC-CCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence            599999999985 9999999 99995 8999999999999999999999999999 8999 999999999998854   5


Q ss_pred             CCccceeeeeeeEEEEEEecCCCC
Q 042002           95 GLLPLETTRHVSVITVTLSKKELD  118 (143)
Q Consensus        95 g~~~~~~~R~vs~I~I~Lsk~~ld  118 (143)
                      |+.   .+|+||+|+|+|++.|..
T Consensus        81 g~~---~~r~vS~IeI~Lsk~~~~  101 (102)
T 2h9u_A           81 GQT---RTRRVSSIEICLEKAGES  101 (102)
T ss_dssp             SCE---EEEEEEEEEEEEEECSSC
T ss_pred             Ccc---ceeEeeeEEEEEEccCCC
Confidence            633   799999999999998753

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.94  E-value=1.9e-26  Score=158.94  Aligned_cols=86  Identities=31%  Similarity=0.573  Sum_probs=78.6

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeecceeeccc
Q 042002           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI-VGLH-QNTAIGSTDITDMWEPLEE   94 (143)
Q Consensus        17 ~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~-~gL~-q~~~i~~v~i~d~~~p~~e   94 (143)
                      .+|+|||++++ +.+||.+|+.+|++ |+++|+|||+|+||+|||++||+||+|+ +||| |.++|++..+.+     ++
T Consensus         2 ~~n~I~V~~k~-v~~yV~~~~~~l~~-g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~   74 (89)
T 1nfj_A            2 AEHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ   74 (89)
T ss_dssp             -CEEEECCSSC-HHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred             CCCEEEEcCCC-HHHHHHHHHHHHhC-CCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence            57999999999 67999999999995 8999999999999999999999999999 8999 999999888765     46


Q ss_pred             CCccceeeeeeeEEEEEEec
Q 042002           95 GLLPLETTRHVSVITVTLSK  114 (143)
Q Consensus        95 g~~~~~~~R~vs~I~I~Lsk  114 (143)
                      |     ++|++|+|+|+|+|
T Consensus        75 g-----~~r~vs~IeI~L~k   89 (89)
T 1nfj_A           75 G-----RRSNVSTIEIVLAK   89 (89)
T ss_dssp             T-----BCCEEEEEEEEEEC
T ss_pred             C-----cEEEeeEEEEEEEC
Confidence            6     78999999999986

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.94  E-value=3.1e-26  Score=160.14  Aligned_cols=89  Identities=35%  Similarity=0.561  Sum_probs=79.5

Q ss_pred             CCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcC-C-c-eeEEEEEEEEeecceee
Q 042002           15 PINENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIV-G-L-HQNTAIGSTDITDMWEP   91 (143)
Q Consensus        15 ~~~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~-g-L-~q~~~i~~v~i~d~~~p   91 (143)
                      ++++|+|||++++ +.+||.+|+.+|++ |.++|+|+|+|+||+|||++||+||+|+. + | ||.++|++..+.+    
T Consensus         6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~~-g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~----   79 (97)
T 2bky_A            6 PTPSNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS----   79 (97)
T ss_dssp             ---CCEEECCSSC-HHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE----
T ss_pred             CCCCCEEEEcCcC-HHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEec----
Confidence            5678999999999 88999999999995 89999999999999999999999999994 4 8 8999999999877    


Q ss_pred             cccCCccceeeeeeeEEEEEEecC
Q 042002           92 LEEGLLPLETTRHVSVITVTLSKK  115 (143)
Q Consensus        92 ~~eg~~~~~~~R~vs~I~I~Lsk~  115 (143)
                       ++|     .+|++|+|+|+|+|.
T Consensus        80 -e~G-----~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           80 -QDG-----RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             -TTS-----CEEEEEEEEEEEEEC
T ss_pred             -CCC-----cEEEeeEEEEEEEcC
Confidence             356     789999999999974

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.94  E-value=4.5e-26  Score=156.49  Aligned_cols=84  Identities=32%  Similarity=0.548  Sum_probs=73.2

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhc-CCce-eEEEEEEEEeecceeecccC
Q 042002           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRI-VGLH-QNTAIGSTDITDMWEPLEEG   95 (143)
Q Consensus        18 ~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~-~gL~-q~~~i~~v~i~d~~~p~~eg   95 (143)
                      +|+|||+++ ++.+||.+|+.+|++ + ++|+|+|+|+||+|||++||+||+|+ +||| |.++|++..+.+     ++|
T Consensus         2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~-----e~g   73 (87)
T 1nh9_A            2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKN-----PDG   73 (87)
T ss_dssp             CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred             CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEc-----CCC
Confidence            699999999 788999999999996 7 99999999999999999999999999 7899 999999988876     356


Q ss_pred             CccceeeeeeeEEEEEEec
Q 042002           96 LLPLETTRHVSVITVTLSK  114 (143)
Q Consensus        96 ~~~~~~~R~vs~I~I~Lsk  114 (143)
                           .+|++|+|+|+|+|
T Consensus        74 -----~~r~vS~IeI~L~k   87 (87)
T 1nh9_A           74 -----REVNVSTIEIVLAK   87 (87)
T ss_dssp             ------CCCEEEEEEEEEC
T ss_pred             -----cEEEeeEEEEEEEC
Confidence                 68999999999986

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.91  E-value=5.7e-24  Score=146.84  Aligned_cols=89  Identities=34%  Similarity=0.461  Sum_probs=79.7

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccCC
Q 042002           17 NENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGL   96 (143)
Q Consensus        17 ~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg~   96 (143)
                      ++|.|+|++|+-+ +||.+|+.+|++ |.++|+|+|+|+||+|||++||+||+||.+   .++++++++.++|.+.++| 
T Consensus         3 ~~~vv~vg~Kpv~-~YV~~~i~~~n~-g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G-   76 (91)
T 3toe_A            3 EENVVYIGNKPVM-NYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG-   76 (91)
T ss_dssp             --CCEECCSSCHH-HHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred             ccCEEEECCCcHH-HHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence            4789999999955 999999999995 899999999999999999999999999843   2499999999999999998 


Q ss_pred             ccceeeeeeeEEEEEEecC
Q 042002           97 LPLETTRHVSVITVTLSKK  115 (143)
Q Consensus        97 ~~~~~~R~vs~I~I~Lsk~  115 (143)
                          .+|+||+|+|+|+++
T Consensus        77 ----~~r~VS~IeI~L~k~   91 (91)
T 3toe_A           77 ----TATNVSAIEIQLRKD   91 (91)
T ss_dssp             ----SEEEEEEEEEEEEC-
T ss_pred             ----ceeEeeEEEEEEECC
Confidence                799999999999985

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.88  E-value=3.6e-22  Score=137.50  Aligned_cols=85  Identities=21%  Similarity=0.253  Sum_probs=70.5

Q ss_pred             CCCCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccC
Q 042002           16 INENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEG   95 (143)
Q Consensus        16 ~~~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg   95 (143)
                      .++|.|+|+++ ++.+||.+|+.+|++ |.++|+|+|+|+||+|||++||+||+||.+.+|..++.   +..+     + 
T Consensus         4 ~~~~iv~vg~k-pv~nYV~~~~~~ln~-g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~---i~se-----~-   72 (89)
T 2bky_X            4 KLNEIVVRKTK-NVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQ---TGSE-----V-   72 (89)
T ss_dssp             CCEEEECCTTS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEE---EEEE-----E-
T ss_pred             CCCCEEEECCC-CHHHHHHHHHHHHhC-CCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEE---eccc-----c-
Confidence            45788888888 577999999999995 89999999999999999999999999998776654433   3322     1 


Q ss_pred             CccceeeeeeeEEEEEEecC
Q 042002           96 LLPLETTRHVSVITVTLSKK  115 (143)
Q Consensus        96 ~~~~~~~R~vs~I~I~Lsk~  115 (143)
                          ...|+||+|+|+|++.
T Consensus        73 ----~~~r~VS~IeI~L~k~   88 (89)
T 2bky_X           73 ----RDRRRISYILLRLKRV   88 (89)
T ss_dssp             ----ETTEEEEEEEEEEEEC
T ss_pred             ----CcceEeeeEEEEEEec
Confidence                2689999999999974

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=99.80  E-value=2.4e-19  Score=130.72  Aligned_cols=91  Identities=25%  Similarity=0.398  Sum_probs=71.7

Q ss_pred             CCCCCeEEEcC-CCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecc
Q 042002           15 PINENEIRITT-QGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLE   93 (143)
Q Consensus        15 ~~~~n~I~V~~-~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~   93 (143)
                      ..++|+|+|+. +.++.+||.+|+.+|+  ++++|+|+|+|+||++||+|||+||+|+-..++.+.+++.++.++    .
T Consensus        17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~----~   90 (130)
T 1vm0_A           17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----A   90 (130)
T ss_dssp             --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred             CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC----C
Confidence            45689999996 3556699999999998  689999999999999999999999999755566677777776543    1


Q ss_pred             cCCccceeeeeeeEEEEEEecCC
Q 042002           94 EGLLPLETTRHVSVITVTLSKKE  116 (143)
Q Consensus        94 eg~~~~~~~R~vs~I~I~Lsk~~  116 (143)
                      .|     +..++|.|+|.|.+.+
T Consensus        91 ~~-----r~v~~skIEI~L~k~~  108 (130)
T 1vm0_A           91 RG-----RPVQKAKIEITLVKSE  108 (130)
T ss_dssp             --------CEEEEEEEEEEEECT
T ss_pred             CC-----cccccceEEEEEEecC
Confidence            12     4556799999999874

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.9e-18  Score=126.14  Aligned_cols=95  Identities=14%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhh---cCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeeccc
Q 042002           18 ENEIRITTQGRMRNYITYATTLLQE---KGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEE   94 (143)
Q Consensus        18 ~n~I~V~~~~~i~~yv~~a~~lL~~---~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~e   94 (143)
                      +|.|||++++.|.+.+.+|.++|+.   .+.++|+|+|||+||.||+++|..++++. ++.-.+.++++.+.|+++|.++
T Consensus        30 ~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~V~T~TV~vvDd~~~~~~  108 (140)
T 3iab_B           30 HTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIEVYTKTIEVLDEVITEGQ  108 (140)
T ss_dssp             TTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEEEEEEEEEEEEECC----
T ss_pred             CceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEEEEeceEEEEEeeeecCC
Confidence            8999999999999999999999985   26899999999999999999999999974 6888899999999999999766


Q ss_pred             C------------CccceeeeeeeEEEEEEe
Q 042002           95 G------------LLPLETTRHVSVITVTLS  113 (143)
Q Consensus        95 g------------~~~~~~~R~vs~I~I~Ls  113 (143)
                      .            .+...+.|+||+|||+++
T Consensus       109 ~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy  139 (140)
T 3iab_B          109 ADIDMESDVEDDDKETQLKKRAVSGVELRIY  139 (140)
T ss_dssp             ----------------CEEEEEEEEEEEEEE
T ss_pred             cccccccccccccccchheeeeeeeEEEEEe
Confidence            4            467899999999999986

>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.49  E-value=2.9e-06  Score=63.11  Aligned_cols=98  Identities=18%  Similarity=0.244  Sum_probs=73.1

Q ss_pred             EEEcCCCchhHHHHHHHHHHhh-----cCCCeEEEEEcChhHHHHHHHHHHHHHhc----CCceeEEEEEEEEeecceee
Q 042002           21 IRITTQGRMRNYITYATTLLQE-----KGSNEISLKAMGRAINKTVMIAELIKRRI----VGLHQNTAIGSTDITDMWEP   91 (143)
Q Consensus        21 I~V~~~~~i~~yv~~a~~lL~~-----~~~~~Vvi~g~G~AI~kAV~vAEilKrr~----~gL~q~~~i~~v~i~d~~~p   91 (143)
                      +.|+++..++..|+.-.++|..     ++.+.|.+.|.|..|.|++++.||+|.++    .+|||++++.......    
T Consensus        47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~----  122 (158)
T 3iab_A           47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKR----  122 (158)
T ss_dssp             EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred             EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCC----
Confidence            4499999999999998888851     25688999999999999999999999987    3599999999875432    


Q ss_pred             cccCCcc-ceeeeeeeEEEEEEecCC-CCCCCCCC
Q 042002           92 LEEGLLP-LETTRHVSVITVTLSKKE-LDTSSTGY  124 (143)
Q Consensus        92 ~~eg~~~-~~~~R~vs~I~I~Lsk~~-ld~~~~Gy  124 (143)
                        +|.++ +.++-+||-+-+.+++.+ .|-+-.||
T Consensus       123 --~grNELle~r~~vPILi~~i~~~~~~~l~~~~~  155 (158)
T 3iab_A          123 --EGRNELQEERLKVPILVTMVSDSEIIDLNLHSF  155 (158)
T ss_dssp             --------CCCCEEEEEEEEEEESSSSCCSCCTTS
T ss_pred             --ccccHHHHhhcCCCEEEEEEecccccccccccc
Confidence              34433 345668888877788763 44444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	9e-28
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	2e-26
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	3e-24
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	8e-22
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	1e-21

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score = 96.3 bits (240), Expect = 9e-28
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 19  NEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNT 78
           N + I  +  M NY+  A TLL + G +EI +KA GRAI+K V   E+++ R   L    
Sbjct: 2   NVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKI 57

Query: 79  AIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKK 115
            I    +       ++G         VS I + + KK
Sbjct: 58  EIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIRKK 89

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 92.9 bits (231), Expect = 2e-26
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQN 77
           E+ + +  +  M NY+    T L E G++E+ +KA GRAI++ V +AE+++ R       
Sbjct: 1   EHVVYVGNKPVM-NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FMPG 55

Query: 78  TAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSK 114
             +    I       E+G        +VS I + L+K
Sbjct: 56  VKVKEIKIDTEELESEQG-----RRSNVSTIEIVLAK 87

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 87.1 bits (216), Expect = 3e-24
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQN 77
           +N + I  +  M NY+    T L     +E+ +KA G+AINK V +AE+I+ R     ++
Sbjct: 2   DNVVLIGKKPVM-NYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIRNR---FIKD 55

Query: 78  TAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSK 114
             I   +I        +G        +VS I + L+K
Sbjct: 56  IKIKKIEIGTDKVKNPDG-----REVNVSTIEIVLAK 87

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 81.4 bits (201), Expect = 8e-22
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 18  ENEIRITTQGR-MRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQ 76
           +N I+++   + +  Y+  A   +Q+   N++ L A+G AI   V + E++K     + +
Sbjct: 2   KNRIQVSNTKKPLFFYVNLAKRYMQQY--NDVELSALGMAIATVVTVTEILKNNGFAVEK 59

Query: 77  NTAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKKE 116
                  DI D                  + I +TL K E
Sbjct: 60  KIMTSIVDIKDDAR---------GRPVQKAKIEITLVKSE 90

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 80.9 bits (200), Expect = 1e-21
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 18  ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQN 77
            NEI +     + +++     L  + G +E+ LK  GR I+K V +   +K R+    Q 
Sbjct: 2   LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQ- 59

Query: 78  TAIGSTDITDMWEPLEEGLLPLETTRHVSVITVTLSKK 115
             + +          E         R +S I + L + 
Sbjct: 60  --LVNVQTGS-----EVR-----DRRRISYILLRLKRV 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.94
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.93
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.92
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.88
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	99.82

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.94  E-value=2.7e-27  Score=161.23  Aligned_cols=89  Identities=34%  Similarity=0.481  Sum_probs=84.2

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccCCc
Q 042002           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLL   97 (143)
Q Consensus        18 ~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg~~   97 (143)
                      .|.|+|++|+.| +||.+|+.+|++ |.++|+|+|+|+||+|||++||++|+||  |||.++++++.+.++|+|.+||  
T Consensus         1 ~n~I~IG~Kp~m-nYV~a~~~~l~~-g~~~V~iKArG~aIskAVdVaEiik~R~--l~~~~~i~~i~I~se~~~~~~G--   74 (89)
T d2bkya1           1 SNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVVTSQDG--   74 (89)
T ss_dssp             CCEEECCSSCHH-HHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHT--STTTEEEEEEEEEEEEEEETTS--
T ss_pred             CCEEEECCCcHH-HHHHHHHHHHhC-CCCeEEEEEehhhhHHHHHHHHHHHHhc--ccCceEEEEEEeccEEeecCCC--
Confidence            489999999977 999999999986 8999999999999999999999999997  8889999999999999999999  


Q ss_pred             cceeeeeeeEEEEEEecC
Q 042002           98 PLETTRHVSVITVTLSKK  115 (143)
Q Consensus        98 ~~~~~R~vs~I~I~Lsk~  115 (143)
                         ..|+||+|+|+|+|+
T Consensus        75 ---~~r~VS~IeI~L~kk   89 (89)
T d2bkya1          75 ---RQSRVSTIEIAIRKK   89 (89)
T ss_dssp             ---CEEEEEEEEEEEEEC
T ss_pred             ---cEEEEEEEEEEEEcC
Confidence               799999999999974

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=3.1e-26  Score=155.59  Aligned_cols=87  Identities=31%  Similarity=0.473  Sum_probs=81.3

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccCCc
Q 042002           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLL   97 (143)
Q Consensus        18 ~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg~~   97 (143)
                      +|.|+|++++.| +||.+|+.+|++ |.++|+|+|+|+||++||++||+||+||   ||.++++.+.+.++|.|.+||  
T Consensus         1 en~I~Ig~Kp~~-~YV~~~~~~l~~-g~~eV~ikArG~aIs~AVdVaEi~k~r~---~~~~~i~~i~i~se~~~~e~g--   73 (87)
T d1nfja_           1 EHVVYVGNKPVM-NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNRF---MPGVKVKEIKIDTEELESEQG--   73 (87)
T ss_dssp             CEEEECCSSCHH-HHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHHT---CTTCEEEEEEEEEEECCCBTT--
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHhc---cCCcEEEEEEEccEEEecCCC--
Confidence            589999999866 999999999986 8999999999999999999999999995   666799999999999999999  


Q ss_pred             cceeeeeeeEEEEEEec
Q 042002           98 PLETTRHVSVITVTLSK  114 (143)
Q Consensus        98 ~~~~~R~vs~I~I~Lsk  114 (143)
                         +.|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~K   87 (87)
T d1nfja_          74 ---RRSNVSTIEIVLAK   87 (87)
T ss_dssp             ---BCCEEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               68999999999986

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=6e-25  Score=149.01  Aligned_cols=86  Identities=33%  Similarity=0.426  Sum_probs=72.3

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccCCc
Q 042002           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLL   97 (143)
Q Consensus        18 ~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg~~   97 (143)
                      +|.|+|++|+.| +||.+|+.+|++ + ++|+|+|+|+||+|||++||++|+||.+.+   .+..+++.++|.|.+||  
T Consensus         2 en~I~Ig~KP~m-~YV~~~~~~~~~-~-~eV~lKArG~aIsrAVdVaEiik~R~~~~~---~i~~i~i~se~~~~~~g--   73 (87)
T d1nh9a_           2 DNVVLIGKKPVM-NYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDI---KIKKIEIGTDKVKNPDG--   73 (87)
T ss_dssp             CSEEEECSSCHH-HHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTC---EEEEEEEEEEC--------
T ss_pred             CCEEEEcCCCHH-HHHHHHHHHhcc-C-CeEEEEEcchhhhHHHHHHHHHHHhccCCe---EEEEEEecceEEecCCC--
Confidence            699999999977 999999999997 4 899999999999999999999999996654   66777899999999999  


Q ss_pred             cceeeeeeeEEEEEEec
Q 042002           98 PLETTRHVSVITVTLSK  114 (143)
Q Consensus        98 ~~~~~R~vs~I~I~Lsk  114 (143)
                         +.|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~k   87 (87)
T d1nh9a_          74 ---REVNVSTIEIVLAK   87 (87)
T ss_dssp             ----CCCEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               68999999999986

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.88  E-value=1.1e-22  Score=137.12  Aligned_cols=84  Identities=24%  Similarity=0.297  Sum_probs=73.3

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccCCc
Q 042002           18 ENEIRITTQGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEGLL   97 (143)
Q Consensus        18 ~n~I~V~~~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg~~   97 (143)
                      .|+|+++.+.++.+||.+|+.+|++ |.++|+|+|+|+||+|||++||++++||++.||+..++   +.++     +|  
T Consensus         2 ~nei~~~~~kp~~nYV~a~i~~f~~-g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~---i~sE-----~~--   70 (86)
T d2bkyx1           2 LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQ---TGSE-----VR--   70 (86)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEE---EEEE-----EE--
T ss_pred             CceEEEEcCCchHHHHHHHHHHHHC-CCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEE---eccc-----cC--
Confidence            5899999998999999999999986 89999999999999999999999999998887666555   4432     23  


Q ss_pred             cceeeeeeeEEEEEEecC
Q 042002           98 PLETTRHVSVITVTLSKK  115 (143)
Q Consensus        98 ~~~~~R~vs~I~I~Lsk~  115 (143)
                         ..|+||+|+|.|.|.
T Consensus        71 ---~~r~VS~IeI~l~k~   85 (86)
T d2bkyx1          71 ---DRRRISYILLRLKRV   85 (86)
T ss_dssp             ---TTEEEEEEEEEEEEC
T ss_pred             ---CceEEEEEEEEEEec
Confidence               588999999999874

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=6e-20  Score=126.79  Aligned_cols=89  Identities=26%  Similarity=0.422  Sum_probs=75.2

Q ss_pred             CCCeEEEcC-CCchhHHHHHHHHHHhhcCCCeEEEEEcChhHHHHHHHHHHHHHhcCCceeEEEEEEEEeecceeecccC
Q 042002           17 NENEIRITT-QGRMRNYITYATTLLQEKGSNEISLKAMGRAINKTVMIAELIKRRIVGLHQNTAIGSTDITDMWEPLEEG   95 (143)
Q Consensus        17 ~~n~I~V~~-~~~i~~yv~~a~~lL~~~~~~~Vvi~g~G~AI~kAV~vAEilKrr~~gL~q~~~i~~v~i~d~~~p~~eg   95 (143)
                      .+|+|+|+. |.++.+||.+|+.+|++  .++|+|+|+|+||++||++||+|++|..+.++.+++++.++.++    .+|
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~--~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~----~~g   74 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQ--YNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----ARG   74 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHH--HSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC---------
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhcc--CCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecC----CCC
Confidence            379999998 55588999999999986  37999999999999999999999999877899999999888653    234


Q ss_pred             CccceeeeeeeEEEEEEecCC
Q 042002           96 LLPLETTRHVSVITVTLSKKE  116 (143)
Q Consensus        96 ~~~~~~~R~vs~I~I~Lsk~~  116 (143)
                           +.|++|.|+|.|.+.+
T Consensus        75 -----r~~~vs~IEI~L~K~~   90 (99)
T d1vm0a_          75 -----RPVQKAKIEITLVKSE   90 (99)
T ss_dssp             ------CEEEEEEEEEEEECT
T ss_pred             -----cccccceEEEEEeeCc
Confidence                 6899999999999874