Citrus Sinensis ID: 042018

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSVHAEGDTSVDHYDDHEDVPSLPPKESADDVLKLSEKIEKQSLSSGNGNTEGKVKQNKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKEYSF
cccccccccccEEEEEEEEEEEEEccEEEEEEEEccHHHHHHHccccccHHHHHHcccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEEEccccHHHHHHHHHHHcccEEEEEccccEEEEEEEEccccHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHcccccccccccccc
ccccEEcccccEEccEEEEEEEEccccEEEEEEccHHHHHHHccccccHHHHHHHHHHEEcccccccccHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHcccccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHEHHHccccccEEEEEEEcccHHHHHHHHHHHccccEEEEEEEEEccccccHcccccHHHcccccHHHccccHHHHHHHHcccccccccccccccccccEccccccEEccHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHccHHcHHHHHHcccc
msktlvqpvgqkrlTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKtvnsetqrpYTISMIERLMHEIhfavdpnssskKQALEVIRELQKhfpikrspmrvgltvpeQNISSLMEKLDAWNASIvskdnsgsqLSLIcemepglfrDCDTLLRNLQGRLEILAVSVhaegdtsvdhyddhedvpslppkesadDVLKLSEKIEKQslssgngntegkvkqnkcstcnayvgdakqyrdhfksdwhkhnlkrktrqlppltveECLADMELDDSKADLKEYSF
msktlvqpvgqkrltnvAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQHLILEKGELQVAGkeretqfsnqfrDIATIvmqktvnsetqRPYTISMIERLMHEIHFavdpnsssKKQALEVIRELQkhfpikrspmrvgLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSVHAEGDTSVDHYDDHEDVPSLPPKESADDVLKLSEKIEkqslssgngntegkvkqnkCSTCNAYVGDAKQYRDHFKsdwhkhnlkrktrqlppltVEECLadmelddskadlkeysf
MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSVHAEGDTSVDHYDDHEDVPSLPPKESADDVLKLSEKIEKQSLSSGNGNTEGKVKQNKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKEYSF
***********KRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAV************VIRELQKHFPI*****RVGLTVP**NISSLMEKLDAWNASIVSK***GSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSVHAE*****************************************************CSTCNAYVGDAKQYRDHFKSDWHKH***********************************
*********GQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQHLILEKGELQVAG******FSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLD**NASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSVHAE*****************************************************CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEEC******************
MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSVHAEGDTSVDHYDDHEDVPSLPPKESADDVLKLSEKIEK****************NKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKEYSF
***TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSVHAEGDTSVDHYDDHEDVPS**********************************QNKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADL***SF
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MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSVHAEGDTSVDHYDDHEDVPSLPPKESADDVLKLSEKIEKQSLSSGNGNTEGKVKQNKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKEYSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query346 2.2.26 [Sep-21-2011]
Q3SWZ6250 Ribosome maturation prote yes no 0.667 0.924 0.483 1e-59
P70122250 Ribosome maturation prote yes no 0.667 0.924 0.483 6e-59
Q5RK30250 Ribosome maturation prote yes no 0.667 0.924 0.483 7e-59
Q5RAZ2250 Ribosome maturation prote yes no 0.667 0.924 0.479 2e-58
Q9Y3A5250 Ribosome maturation prote yes no 0.667 0.924 0.479 2e-58
Q5ZIY4250 Ribosome maturation prote yes no 0.667 0.924 0.471 2e-58
A5D8M6250 Ribosome maturation prote N/A no 0.667 0.924 0.5 2e-57
Q6DIT8250 Ribosome maturation prote yes no 0.667 0.924 0.491 6e-57
Q86KZ5274 Ribosome maturation prote yes no 0.684 0.864 0.436 9e-57
Q23202253 Ribosome maturation prote yes no 0.687 0.940 0.428 4e-52
>sp|Q3SWZ6|SBDS_BOVIN Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1 Back     alignment and function desciption
 Score =  230 bits (587), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/246 (48%), Positives = 165/246 (67%), Gaps = 15/246 (6%)

Query: 4   TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
           ++  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGILAKSKDLIQHL-----------ILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
           KG +AK +DLI              IL KGE+QV+ KER TQ    FRDIATIV  K VN
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
            ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++   I+R+ MR+   +P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP-V 180

Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVS 229
           N    +++       ++  ++ G QL ++C ++PG FR+ D L++     +G LE+L++ 
Sbjct: 181 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSLK 240

Query: 230 VHAEGD 235
              EGD
Sbjct: 241 DVEEGD 246
Required for the assembly of mature ribosomes and ribosome biogenesis. Together with EFTUD1, triggers the GTP-dependent release of EIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating EIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. Required for normal levels of protein synthesis. May play a role in cellular stress resistance. May play a role in cellular response to DNA damage. May play a role in cell proliferation.
Bos taurus (taxid: 9913)
>sp|P70122|SBDS_MOUSE Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4 Back     alignment and function description
>sp|Q5RK30|SBDS_RAT Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1 Back     alignment and function description
>sp|Q5RAZ2|SBDS_PONAB Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1 Back     alignment and function description
>sp|Q9Y3A5|SBDS_HUMAN Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4 Back     alignment and function description
>sp|Q5ZIY4|SBDS_CHICK Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1 Back     alignment and function description
>sp|A5D8M6|SBDS_XENLA Ribosome maturation protein SBDS OS=Xenopus laevis GN=sbds PE=2 SV=1 Back     alignment and function description
>sp|Q6DIT8|SBDS_XENTR Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2 SV=1 Back     alignment and function description
>sp|Q86KZ5|SBDS_DICDI Ribosome maturation protein SBDS OS=Dictyostelium discoideum GN=sbds PE=3 SV=2 Back     alignment and function description
>sp|Q23202|SBDS_CAEEL Ribosome maturation protein SBDS OS=Caenorhabditis elegans GN=sbds-1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
225457809358 PREDICTED: ribosome maturation protein S 1.0 0.966 0.779 1e-164
224066757356 predicted protein [Populus trichocarpa] 0.997 0.969 0.761 1e-158
255558444356 Shwachman-Bodian-Diamond syndrome protei 0.997 0.969 0.778 1e-156
18401084370 sequence-specific DNA binding transcript 1.0 0.935 0.710 1e-150
21554225370 unknown [Arabidopsis thaliana] 1.0 0.935 0.708 1e-150
297846792370 transcription factor [Arabidopsis lyrata 1.0 0.935 0.708 1e-150
224082388357 predicted protein [Populus trichocarpa] 0.997 0.966 0.762 1e-148
356552763358 PREDICTED: ribosome maturation protein S 1.0 0.966 0.678 1e-141
359807207355 uncharacterized protein LOC100776352 [Gl 0.991 0.966 0.670 1e-138
388498820359 unknown [Lotus japonicus] 1.0 0.963 0.668 1e-137
>gi|225457809|ref|XP_002266110.1| PREDICTED: ribosome maturation protein SBDS [Vitis vinifera] gi|302142747|emb|CBI19950.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/358 (77%), Positives = 315/358 (87%), Gaps = 12/358 (3%)

Query: 1   MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYS 60
           MS+ + QP+GQKRLTNVAVVRLKK G+RFEIACYKNKVLSWRS VEKDLDEVLQSH VYS
Sbjct: 1   MSRVVQQPIGQKRLTNVAVVRLKKKGIRFEIACYKNKVLSWRSGVEKDLDEVLQSHIVYS 60

Query: 61  NVSKGILAKSKDL------------IQHLILEKGELQVAGKERETQFSNQFRDIATIVMQ 108
           NVSKG+LAKSKDL            I   IL+KGELQVAGKERE+Q S+QFRDIATIVMQ
Sbjct: 61  NVSKGVLAKSKDLEAAFGKERDQTEILLEILDKGELQVAGKERESQLSSQFRDIATIVMQ 120

Query: 109 KTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLT 168
           KT+N ETQRPYT SMIERLMHEIHF+VDPNSSSKKQALEVIRELQKHFPIKR PMR+ LT
Sbjct: 121 KTINPETQRPYTSSMIERLMHEIHFSVDPNSSSKKQALEVIRELQKHFPIKRCPMRLRLT 180

Query: 169 VPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAV 228
           VP+QN SSL+EKL+ WNASIVSKD SG QLS+ICEMEPG+FRDCD L+RNLQGRLEILAV
Sbjct: 181 VPQQNFSSLLEKLNVWNASIVSKDESGGQLSIICEMEPGIFRDCDALVRNLQGRLEILAV 240

Query: 229 SVHAEGDTSVDHYDDHEDVPSLPPKESADDVLKLSEKIEKQSLSSGNGNTEGKVKQNKCS 288
           S+H EGDT VD YDDHE VPS  PKESAD VL+LSEK+++Q++S G+ +TEG+VKQNKCS
Sbjct: 241 SLHMEGDTHVDDYDDHEHVPSRLPKESADPVLQLSEKVQRQTISVGSSSTEGEVKQNKCS 300

Query: 289 TCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKEYSF 346
           TC+A+VGD+KQYR+HFKS+WHKHNL RKTRQLPPL+ EECL DME++D KADLK+YSF
Sbjct: 301 TCDAFVGDSKQYREHFKSEWHKHNLGRKTRQLPPLSAEECLTDMEMNDLKADLKDYSF 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066757|ref|XP_002302200.1| predicted protein [Populus trichocarpa] gi|222843926|gb|EEE81473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255558444|ref|XP_002520247.1| Shwachman-Bodian-Diamond syndrome protein, putative [Ricinus communis] gi|223540466|gb|EEF42033.1| Shwachman-Bodian-Diamond syndrome protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18401084|ref|NP_564488.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|7523664|gb|AAF63104.1|AC006423_5 Unknown protein [Arabidopsis thaliana] gi|15450898|gb|AAK96720.1| Unknown protein [Arabidopsis thaliana] gi|30725592|gb|AAP37818.1| At1g43860 [Arabidopsis thaliana] gi|332193881|gb|AEE32002.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21554225|gb|AAM63300.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297846792|ref|XP_002891277.1| transcription factor [Arabidopsis lyrata subsp. lyrata] gi|297337119|gb|EFH67536.1| transcription factor [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224082388|ref|XP_002306675.1| predicted protein [Populus trichocarpa] gi|222856124|gb|EEE93671.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356552763|ref|XP_003544732.1| PREDICTED: ribosome maturation protein SBDS-like [Glycine max] Back     alignment and taxonomy information
>gi|359807207|ref|NP_001241105.1| uncharacterized protein LOC100776352 [Glycine max] gi|255639820|gb|ACU20203.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388498820|gb|AFK37476.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
TAIR|locus:2029152370 AT1G43860 "AT1G43860" [Arabido 1.0 0.935 0.713 3.6e-137
UNIPROTKB|Q6ZD69357 P0450B04.21 "cDNA clone:001-12 0.991 0.960 0.611 1.7e-114
UNIPROTKB|Q3SWZ6250 SBDS "Ribosome maturation prot 0.667 0.924 0.495 6.8e-56
UNIPROTKB|Q5ZIY4250 SBDS "Ribosome maturation prot 0.679 0.94 0.48 8.6e-56
UNIPROTKB|F1RJJ3250 SBDS "Uncharacterized protein" 0.667 0.924 0.495 8.6e-56
MGI|MGI:1913961250 Sbds "Shwachman-Bodian-Diamond 0.667 0.924 0.508 1.1e-55
UNIPROTKB|B5XEK1250 SBDS "Ribosome maturation prot 0.679 0.94 0.496 1.4e-55
RGD|1311043250 Sbds "Shwachman-Bodian-Diamond 0.667 0.924 0.504 1.4e-55
UNIPROTKB|Q9Y3A5250 SBDS "Ribosome maturation prot 0.667 0.924 0.491 9.9e-55
UNIPROTKB|Q5RAZ2250 SBDS "Ribosome maturation prot 0.667 0.924 0.491 9.9e-55
TAIR|locus:2029152 AT1G43860 "AT1G43860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1343 (477.8 bits), Expect = 3.6e-137, P = 3.6e-137
 Identities = 264/370 (71%), Positives = 315/370 (85%)

Query:     1 MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYS 60
             MSKTLVQPVGQKRLTNVAVVRLKK G RFEIACYKNKVLSWRS VEKD+DEVLQSHTVYS
Sbjct:     1 MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYS 60

Query:    61 NVSKGILAKSKDLIQ------HL-----ILEKGELQVAGKERETQFSNQFRDIATIVMQK 109
             NVSKG+LAKSKDL++      H      ILEKGELQVAGKERE+QFS+QFRDIATIVMQK
Sbjct:    61 NVSKGVLAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQK 120

Query:   110 TVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTV 169
             T+N ETQRPYTISM+ERLMHEIHFAVDP+S+SKKQAL+VIRELQKHFPIKRSPMR+ LTV
Sbjct:   121 TINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIRELQKHFPIKRSPMRLRLTV 180

Query:   170 PEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVS 229
             P QN  SL+EKL  W+ S+VSKD SG+Q+S +CEMEPGLFR+CD+ +R++QGRLEILAVS
Sbjct:   181 PVQNFPSLLEKLKEWDGSVVSKDESGTQMSTVCEMEPGLFRECDSHVRSIQGRLEILAVS 240

Query:   230 VHAEGDTSVDHYDDHEDV------PSLPP----KESADDVLKLSEKIEKQSLSS-GNGNT 278
             VHAEGDTS+DHYD+H+D+      P LP     K+  D V++LS+K++KQ +S+  N   
Sbjct:   241 VHAEGDTSMDHYDEHDDMALQTHKPLLPAETETKDLTDPVVELSKKLQKQEISTTDNIKQ 300

Query:   279 EG--KVKQNKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDD 336
             EG  + K  KCSTCN +VG+AKQYR+H KSDWHKHNLKRKTR+LPP++ +EC++++++DD
Sbjct:   301 EGGEEKKGTKCSTCNTFVGEAKQYREHCKSDWHKHNLKRKTRKLPPISADECMSEIDMDD 360

Query:   337 SKADLKEYSF 346
             S+ADLK+YSF
Sbjct:   361 SRADLKDYSF 370
GO:0003723 "RNA binding" evidence=IBA
GO:0005634 "nucleus" evidence=IBA
GO:0005737 "cytoplasm" evidence=ISM;IBA
GO:0006364 "rRNA processing" evidence=IBA
GO:0042254 "ribosome biogenesis" evidence=IEA
GO:0042273 "ribosomal large subunit biogenesis" evidence=IBA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
UNIPROTKB|Q6ZD69 P0450B04.21 "cDNA clone:001-125-F01, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWZ6 SBDS "Ribosome maturation protein SBDS" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIY4 SBDS "Ribosome maturation protein SBDS" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJJ3 SBDS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913961 Sbds "Shwachman-Bodian-Diamond syndrome homolog (human)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B5XEK1 SBDS "Ribosome maturation protein SBDS" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
RGD|1311043 Sbds "Shwachman-Bodian-Diamond syndrome" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y3A5 SBDS "Ribosome maturation protein SBDS" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RAZ2 SBDS "Ribosome maturation protein SBDS" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
PTZ00448373 PTZ00448, PTZ00448, hypothetical protein; Provisio 2e-57
COG1500234 COG1500, COG1500, Predicted exosome subunit [Trans 6e-47
pfam09377126 pfam09377, SBDS_C, SBDS protein C-terminal domain 2e-43
TIGR00291231 TIGR00291, RNA_SBDS, rRNA metabolism protein, SBDS 2e-39
pfam0117291 pfam01172, SBDS, Shwachman-Bodian-Diamond syndrome 2e-29
PRK13760231 PRK13760, PRK13760, putative RNA-associated protei 4e-20
smart0045135 smart00451, ZnF_U1, U1-like zinc finger 8e-04
>gnl|CDD|185627 PTZ00448, PTZ00448, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  189 bits (482), Expect = 2e-57
 Identities = 120/362 (33%), Positives = 191/362 (52%), Gaps = 40/362 (11%)

Query: 4   TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
           +L QP  Q +LTNVAVVR K HG RFE+ACYKNK+L+WRS VE DLDEVLQ  T+++NVS
Sbjct: 2   SLFQPSNQIKLTNVAVVRYKSHGKRFEVACYKNKILNWRSGVEWDLDEVLQIRTIFANVS 61

Query: 64  KGILAKSKDLIQ-----------HLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
           KG LA S DL               IL KGE+QV+  ER      QF DI  ++ + TVN
Sbjct: 62  KGQLANSDDLNTVFGTNSIDNICKTILSKGEIQVSETERSYMLDKQFTDICHMLNRMTVN 121

Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFP--IKRSPMRVGLTVP 170
            +   P ++ +IE  + +  F+V  N ++K+QAL+    L+K  P  I+R+ M + L+V 
Sbjct: 122 PKNNLPLSVKIIESELKDSGFSVSLNKTTKEQALKAFDILKKRIPDQIERAKMMLKLSVD 181

Query: 171 EQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVSV 230
             N  ++ +KL+ +N   +S +   +  S+    EP  +R+ D     L  +L +L  +V
Sbjct: 182 IVNKQNITKKLNEFNVFPISSEEKHNTYSITFLCEPRYYREID----QLDCKLLLLDSNV 237

Query: 231 HA-EGDTSVDHYD----DHEDVPSLPPKESADDVLK-LSEKIEKQSLSSGNGN------- 277
              + +++ D+ +    +  +   +      +D    + +K+EK  +S            
Sbjct: 238 KTIDKNSNQDNVEAIQLELSNKSDILFNSITNDPRHIIDKKLEKTEVSIKENANKFVKPI 297

Query: 278 --------TEGKVKQNK--CSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEE 327
                   ++ ++K N   C  CN  + D   ++ H++S+WH  N KR  R++ P++ EE
Sbjct: 298 VSSLNIEESKREIKSNMLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEE 357

Query: 328 CL 329
            L
Sbjct: 358 FL 359

Length = 373
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|220213 pfam09377, SBDS_C, SBDS protein C-terminal domain Back     alignment and domain information
>gnl|CDD|129392 TIGR00291, RNA_SBDS, rRNA metabolism protein, SBDS family Back     alignment and domain information
>gnl|CDD|189870 pfam01172, SBDS, Shwachman-Bodian-Diamond syndrome (SBDS) protein Back     alignment and domain information
>gnl|CDD|237492 PRK13760, PRK13760, putative RNA-associated protein; Provisional Back     alignment and domain information
>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 346
PTZ00448373 hypothetical protein; Provisional 100.0
KOG2917250 consensus Predicted exosome subunit [Translation, 100.0
TIGR00291231 RNA_SBDS rRNA metabolism protein, SBDS family. Thi 100.0
PRK13760231 putative RNA-associated protein; Provisional 100.0
COG1500234 Predicted exosome subunit [Translation, ribosomal 100.0
PF09377125 SBDS_C: SBDS protein C-terminal domain; InterPro: 100.0
PF0117291 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) pro 99.94
KOG2785 390 consensus C2H2-type Zn-finger protein [General fun 99.7
KOG2505 591 consensus Ankyrin repeat protein [General function 99.5
smart0045135 ZnF_U1 U1-like zinc finger. Family of C2H2-type zi 97.33
PF1217127 zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi 96.88
PF1287425 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG 96.45
PF0918656 DUF1949: Domain of unknown function (DUF1949); Int 93.73
cd0409778 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elo 93.21
PF0067989 EFG_C: Elongation factor G C-terminus; InterPro: I 93.17
cd0371079 BipA_TypA_C BipA_TypA_C: a C-terminal portion of B 93.08
KOG3408129 consensus U1-like Zn-finger-containing protein, pr 92.86
cd0371178 Tet_C Tet_C: C-terminus of ribosomal protection pr 92.46
cd0371378 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C- 92.23
PF0009623 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 92.19
cd0409680 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family r 91.92
PF1389424 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP 91.75
cd0151479 Elongation_Factor_C Elongation factor G C-terminus 91.63
cd0370980 lepA_C lepA_C: This family represents the C-termin 91.57
PF1391227 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9 91.37
cd0409880 eEF2_C_snRNP eEF2_C_snRNP: This family includes a 91.36
smart0083885 EFG_C Elongation factor G C-terminus. This domain 90.8
PF12756100 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 86.85
PRK11568204 hypothetical protein; Provisional 84.59
PHA0276855 hypothetical protein; Provisional 83.95
TIGR00119157 acolac_sm acetolactate synthase, small subunit. ac 82.4
TIGR00257204 IMPACT_YIGZ uncharacterized protein, YigZ family. 81.21
PRK11895161 ilvH acetolactate synthase 3 regulatory subunit; R 80.67
>PTZ00448 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.4e-106  Score=785.96  Aligned_cols=333  Identities=37%  Similarity=0.572  Sum_probs=305.5

Q ss_pred             ccccCCCCceecceeEEEEEeeCCeEEEEEeecchhHHhhccCCCCchhhhhccccccccCCCccCChhhhhhh------
Q 042018            3 KTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQH------   76 (346)
Q Consensus         3 ~~i~~P~~q~~LtNvavVRlkk~GkrFEIacypnkv~~~R~G~e~dldeVLq~~~VF~NvsKG~~A~~~dL~ka------   76 (346)
                      |+||||+||++||||+|||||++|+|||||||||+|++||+|+++|||||||+|+||+|||||++|+++||++|      
T Consensus         1 m~i~qP~~qi~LtnvavVRlkk~GkrFEIacypnkv~~~R~G~e~dldeVLq~~~VF~NvsKG~~A~~edL~kaFGTtD~   80 (373)
T PTZ00448          1 MSLFQPSNQIKLTNVAVVRYKSHGKRFEVACYKNKILNWRSGVEWDLDEVLQIRTIFANVSKGQLANSDDLNTVFGTNSI   80 (373)
T ss_pred             CCccCCCCceEeeeeEEEEEeeCCEEEEEEECccHHHHHHcCCCCCHHHHhhhhheeecccccccCCHHHHHHHhCCCCH
Confidence            55999999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             -----hhcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHhhcCcccCCCCCHHHHHHHHHHH
Q 042018           77 -----LILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRE  151 (346)
Q Consensus        77 -----~IL~kGElQvs~~ER~~~le~~~r~I~~~Ia~~~VnP~T~rP~p~~~IE~Am~e~~~~Vdp~ksak~QalevIk~  151 (346)
                           +||+|||+|||++||++++|+++|+||++||++||||+|++|||++|||+||+++||+|||+||+|+||+++||+
T Consensus        81 ~eI~k~IL~KGElQlt~~ER~~~~E~k~r~Ii~~Ia~~~InP~T~~P~P~~rIE~Am~e~~~~Vdp~Ksak~Qalevik~  160 (373)
T PTZ00448         81 DNICKTILSKGEIQVSETERSYMLDKQFTDICHMLNRMTVNPKNNLPLSVKIIESELKDSGFSVSLNKTTKEQALKAFDI  160 (373)
T ss_pred             HHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCCHHHHHHHHHHH
Confidence                 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCC--ccccceEEEEEecCcchhHHHHHHHhhcccceeecCCCCeEEEEEEecCCCchhHHHHhhhcCceEEEEEee
Q 042018          152 LQKHFP--IKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNLQGRLEILAVS  229 (346)
Q Consensus       152 L~~~iP--I~ra~m~l~v~vp~~~~~~~~~~l~~~~~~v~~~e~~~~~~~~~~~I~pG~~r~l~~~v~~~kG~~evl~~~  229 (346)
                      |+++||  |+||+|+|+|.+|......++++|..|+...++.+.+++.|+++|+|+||.||.|+++    +|++|||+++
T Consensus       161 L~~iiPikiera~m~vki~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~idP~~yR~~~~l----~g~l~v~~~~  236 (373)
T PTZ00448        161 LKKRIPDQIERAKMMLKLSVDIVNKQNITKKLNEFNVFPISSEEKHNTYSITFLCEPRYYREIDQL----DCKLLLLDSN  236 (373)
T ss_pred             HHHhCCcceeEEEEEEEEecccccHHHHHHHHhhcccccccccccCCceEEEEEECCccccchhcc----CceeEEEeee
Confidence            999999  7788888888888777889999999995444445556778999999999999999884    8999999999


Q ss_pred             eee---------cCCccccccCCCCCCCCCCCCCCchhhhhhhHHHhhhhcc-CCCCCC------------CCc----cc
Q 042018          230 VHA---------EGDTSVDHYDDHEDVPSLPPKESADDVLKLSEKIEKQSLS-SGNGNT------------EGK----VK  283 (346)
Q Consensus       230 ~~~---------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~------------~~k----~~  283 (346)
                      ++.         +|+.++|.+|++++.++++|   .++...++++|+++++| ++++++            .++    ..
T Consensus       237 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (373)
T PTZ00448        237 VKTIDKNSNQDNVEAIQLELSNKSDILFNSIT---NDPRHIIDKKLEKTEVSIKENANKFVKPIVSSLNIEESKREIKSN  313 (373)
T ss_pred             ccccccccccccccccccccccccccchhccC---CChHHHHhHhhhhhccccccccccccccchhhhhhhhhccccccC
Confidence            999         99999999999999999999   34566899999999999 444442            011    02


Q ss_pred             CccccccccccCChhHHHhhhcchhhhhhhhhhhcCCCCCChHHHHhhhhhhhhhhhhhh
Q 042018          284 QNKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKE  343 (346)
Q Consensus       284 ~~~C~tC~~~F~~~~~~r~H~kSdwHryNlKRk~~gl~plseee~F~~~~~~~~~~~~~~  343 (346)
                      .++|++|++.|.+.++||.||||||||||||||++||||||+++ |++++.+-..+|++.
T Consensus       314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gLppvse~e-F~~~i~d~~~~~~~~  372 (373)
T PTZ00448        314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEE-FLELQQDIKLGFLAV  372 (373)
T ss_pred             CccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCCCCCCHHH-HHHHHhhcccccccc
Confidence            57899999999999999999999999999999999999999999 999998877777653

>KOG2917 consensus Predicted exosome subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family Back     alignment and domain information
>PRK13760 putative RNA-associated protein; Provisional Back     alignment and domain information
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants [] Back     alignment and domain information
>PF01172 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) protein ; InterPro: IPR019783 This entry represents the N-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants [] Back     alignment and domain information
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>smart00451 ZnF_U1 U1-like zinc finger Back     alignment and domain information
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A Back     alignment and domain information
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins Back     alignment and domain information
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes Back     alignment and domain information
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 Back     alignment and domain information
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification] Back     alignment and domain information
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) Back     alignment and domain information
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G Back     alignment and domain information
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A Back     alignment and domain information
>cd01514 Elongation_Factor_C Elongation factor G C-terminus Back     alignment and domain information
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane Back     alignment and domain information
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B Back     alignment and domain information
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>smart00838 EFG_C Elongation factor G C-terminus Back     alignment and domain information
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A Back     alignment and domain information
>PRK11568 hypothetical protein; Provisional Back     alignment and domain information
>PHA02768 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00119 acolac_sm acetolactate synthase, small subunit Back     alignment and domain information
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family Back     alignment and domain information
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
2l9n_A252 Structure Of The Human Shwachman-Bodian-Diamond Syn 8e-60
2kdo_A252 Structure Of The Human Shwachman-Bodian-Diamond Syn 2e-59
1p9q_C256 Structure Of A Hypothetical Protein Af0491 From Arc 7e-11
1t95_A240 Crystal Structure Of The Shwachman-Bodian-Diamond S 1e-09
2wbm_A252 Crystal Structure Of Mthsbds, The Homologue Of The 6e-09
>pdb|2L9N|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome (Sbds) Protein Length = 252 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (578), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 119/248 (47%), Positives = 164/248 (66%), Gaps = 15/248 (6%)
Query: 2   SKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSN 61
           S ++  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ N
Sbjct: 2   SMSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVN 61
Query: 62  VSKGILAKSKDLIQHL-----------ILEKGELQVAGKERETQFSNQFRDIATIVMQKT 110
           VSKG +AK +DLI              IL KGE+QV+ KER TQ    FRDIATIV  K 
Sbjct: 62  VSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKC 121
Query: 111 VNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVP 170
           VN ET+RPYT+ +IER M +IH++V  N S+K+QALEVI++L++   I+R+ MR+   +P
Sbjct: 122 VNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP 181
Query: 171 EQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILA 227
             N    +++       ++  ++ G QL ++C ++PG FR+ D L++     +G LE+L 
Sbjct: 182 -VNEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLN 240
Query: 228 VSVHAEGD 235
           +    EGD
Sbjct: 241 LKDVEEGD 248
>pdb|2KDO|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome Protein, Sbds Length = 252 Back     alignment and structure
>pdb|1P9Q|C Chain C, Structure Of A Hypothetical Protein Af0491 From Archaeoglobus Fulgidus Length = 256 Back     alignment and structure
>pdb|1T95|A Chain A, Crystal Structure Of The Shwachman-Bodian-Diamond Syndrome Protein Orthologue From Archaeoglobus Fulgidus Length = 240 Back     alignment and structure
>pdb|2WBM|A Chain A, Crystal Structure Of Mthsbds, The Homologue Of The Shwachman-Bodian-Diamond Syndrome Protein In The Euriarchaeon Methanothermobacter Thermautotrophicus Length = 252 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
2kdo_A252 Ribosome maturation protein SBDS; SBDS protein, pr 2e-81
1t95_A240 Hypothetical protein AF0491; shwachman-bodian-diam 8e-76
2wbm_A252 MTHSBDS, ribosome maturation protein SDO1 homolog; 3e-73
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1zu1_A127 DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr 3e-04
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A Length = 252 Back     alignment and structure
 Score =  247 bits (631), Expect = 2e-81
 Identities = 121/250 (48%), Positives = 164/250 (65%), Gaps = 15/250 (6%)

Query: 4   TLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVS 63
           ++  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRS VEKDLDEVLQ+H+V+ NVS
Sbjct: 4   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 63

Query: 64  KGILAKSKDL-----------IQHLILEKGELQVAGKERETQFSNQFRDIATIVMQKTVN 112
           KG +AK +DL           I   IL KGE+QV+ KER TQ    FRDIATIV  K VN
Sbjct: 64  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 123

Query: 113 SETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQ 172
            ET+RPYT+ +IER M +IH++V  N S+K+QALEVI++L++   I+R+ MR+   +P  
Sbjct: 124 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 183

Query: 173 NISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVS 229
               L EKL      ++  ++ G QL ++C ++PG FR+ D L++     +G LE+L + 
Sbjct: 184 EGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK 242

Query: 230 VHAEGDTSVD 239
              EGD   +
Sbjct: 243 DVEEGDEKFE 252
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C Length = 240 Back     alignment and structure
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 252 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Length = 127 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
2kdo_A252 Ribosome maturation protein SBDS; SBDS protein, pr 100.0
2wbm_A252 MTHSBDS, ribosome maturation protein SDO1 homolog; 100.0
1t95_A240 Hypothetical protein AF0491; shwachman-bodian-diam 100.0
1nyn_A131 Hypothetical 12.0 kDa protein in NAM8-GAR1 interge 99.78
1zu1_A127 DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr 96.91
1zr9_A124 Zinc finger protein 593; DNA binding, structural g 94.35
1zu1_A127 DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr 93.58
3lh2_S76 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immun 91.59
2kvf_A28 Zinc finger and BTB domain-containing protein 32; 90.46
1znf_A27 31ST zinc finger from XFIN; zinc finger DNA bindin 90.24
2kvh_A27 Zinc finger and BTB domain-containing protein 32; 89.98
1ard_A29 Yeast transcription factor ADR1; transcription reg 89.64
1rik_A29 E6APC1 peptide; E6-binding domain, zinc finger, hu 89.41
2kvg_A27 Zinc finger and BTB domain-containing protein 32; 89.06
2lvu_A26 Zinc finger and BTB domain-containing protein 17; 88.07
2m0f_A29 Zinc finger and BTB domain-containing protein 17; 87.85
1klr_A30 Zinc finger Y-chromosomal protein; transcription; 87.84
2elx_A35 Zinc finger protein 406; ZFAT zinc finger 1, struc 87.51
1fv5_A36 First zinc finger of U-shaped; CCHC, protein inter 87.37
2m0d_A30 Zinc finger and BTB domain-containing protein 17; 87.21
1paa_A30 Yeast transcription factor ADR1; transcription reg 87.11
1p7a_A37 BF3, BKLF, kruppel-like factor 3; classical zinc f 87.02
1srk_A35 Zinc finger protein ZFPM1; classical zinc finger, 86.85
2epp_A66 POZ-, at HOOK-, and zinc finger-containing protein 86.71
2lvr_A30 Zinc finger and BTB domain-containing protein 17; 86.69
2elo_A37 Zinc finger protein 406; ZFAT zinc finger 1, struc 85.96
2els_A36 Zinc finger protein 406; ZFAT zinc finger 1, struc 85.72
2elr_A36 Zinc finger protein 406; ZFAT zinc finger 1, struc 85.53
2ytb_A42 Zinc finger protein 32; zinc-finger domain, C2H2, 85.4
2m0e_A29 Zinc finger and BTB domain-containing protein 17; 85.33
1rim_A33 E6APC2 peptide; E6-binding domain, zinc finger, hu 85.27
2elq_A36 Zinc finger protein 406; ZFAT zinc finger 1, struc 85.17
2lvt_A29 Zinc finger and BTB domain-containing protein 17; 85.43
2yte_A42 Zinc finger protein 473; ZF-C2H2, structural genom 85.1
2elt_A36 Zinc finger protein 406; ZFAT zinc finger 1, struc 85.06
2elv_A36 Zinc finger protein 406; ZFAT zinc finger 1, struc 84.8
2yrk_A55 Zinc finger homeobox protein 4; structure genomics 84.62
1njq_A39 Superman protein; zinc-finger, peptide-zinc comple 84.27
2eos_A42 B-cell lymphoma 6 protein; ZF-C2H2, structural gen 83.96
1fu9_A36 U-shaped transcriptional cofactor; zinc-finger, be 83.95
2ep1_A46 Zinc finger protein 484; ZF-C2H2, structural genom 83.89
2enf_A46 Zinc finger protein 347; ZF-C2H2, structural genom 83.36
2el5_A42 Zinc finger protein 268; alternative splicing, DNA 83.3
2emg_A46 Zinc finger protein 484; ZF-C2H2, structural genom 83.29
2epr_A48 POZ-, at HOOK-, and zinc finger-containing protein 83.16
2en7_A44 Zinc finger protein 268; ZF-C2H2, structural genom 83.09
2yth_A46 Zinc finger protein 224; ZF-C2H2, structural genom 83.03
2eq2_A46 Zinc finger protein 347; C2H2, zinc finger domain, 83.03
2yts_A46 Zinc finger protein 484; ZF-C2H2, structural genom 82.97
2eon_A46 ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s 82.76
2epv_A44 Zinc finger protein 268; C2H2, zinc finger domain, 82.71
2en9_A46 Zinc finger protein 28 homolog; ZF-C2H2, structura 82.69
2emb_A44 Zinc finger protein 473; ZF-C2H2, structural genom 82.53
2emi_A46 Zinc finger protein 484; ZF-C2H2, structural genom 82.51
2eop_A46 Zinc finger protein 268; ZF-C2H2, structural genom 82.5
2yti_A46 Zinc finger protein 347; ZF-C2H2, structural genom 82.48
2eof_A44 Zinc finger protein 268; ZF-C2H2, structural genom 82.46
2ytf_A46 Zinc finger protein 268; ZF-C2H2, structural genom 82.46
3mjh_B34 Early endosome antigen 1; protein-zinc finger comp 82.42
2elp_A37 Zinc finger protein 406; ZFAT zinc finger 1, struc 82.4
2epc_A42 Zinc finger protein 32; zinc finger domain, C2H2, 82.26
2elz_A46 Zinc finger protein 224; DNA-binding, metal-bindin 82.21
2ytp_A46 Zinc finger protein 484; ZF-C2H2, structural genom 82.21
2eq1_A46 Zinc finger protein 347; C2H2, zinc finger domain, 82.2
2eoh_A46 Zinc finger protein 28 homolog; ZF-C2H2, structura 82.16
2ept_A41 Zinc finger protein 32; C2H2, zinc finger domain, 82.09
2em7_A46 Zinc finger protein 224; ZF-C2H2, structural genom 82.09
2eln_A38 Zinc finger protein 406; ZFAT zinc finger 1, struc 82.03
2em0_A46 Zinc finger protein 224; DNA-binding, metal-bindin 81.99
2enh_A46 Zinc finger protein 28 homolog; ZF-C2H2, structura 81.99
2ytn_A46 Zinc finger protein 347; ZF-C2H2, structural genom 81.98
2eoj_A44 Zinc finger protein 268; ZF-C2H2, structural genom 81.97
2eor_A46 Zinc finger protein 224; ZF-C2H2, structural genom 81.92
2eom_A46 ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s 81.88
2epz_A46 Zinc finger protein 28 homolog; C2H2, zinc finger 81.88
2em6_A46 Zinc finger protein 224; ZF-C2H2, structural genom 81.73
2el4_A46 Zinc finger protein 268; alternative splicing, DNA 81.72
2ep3_A46 Zinc finger protein 484; ZF-C2H2, structural genom 81.68
2yrj_A46 Zinc finger protein 473; C2H2-type zinc finger, st 81.61
2en2_A42 B-cell lymphoma 6 protein; ZF-C2H2, structural gen 81.57
2eoy_A46 Zinc finger protein 473; ZF-C2H2, structural genom 81.49
2emf_A46 Zinc finger protein 484; ZF-C2H2, structural genom 81.46
2cve_A191 Hypothetical protein TTHA1053; COG1739, UPF0029, s 81.42
1zfd_A32 SWI5; DNA binding motif, zinc finger DNA binding d 81.35
2emj_A46 Zinc finger protein 28 homolog; ZF-C2H2, structura 81.22
2eq4_A46 Zinc finger protein 224; C2H2, zinc finger domain, 81.19
2yrm_A43 B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, 81.12
2eou_A44 Zinc finger protein 473; ZF-C2H2, structural genom 81.01
1sp2_A31 SP1F2; zinc finger, transcription activation; NMR 80.95
2eq3_A46 Zinc finger protein 347; C2H2, zinc finger domain, 80.92
2eov_A46 Zinc finger protein 484; ZF-C2H2, structural genom 80.9
2ytq_A46 Zinc finger protein 268; ZF-C2H2, structural genom 80.75
2emx_A44 Zinc finger protein 268; ZF-C2H2, structural genom 80.73
2ytr_A46 Zinc finger protein 347; ZF-C2H2, structural genom 80.7
2eow_A46 Zinc finger protein 347; ZF-C2H2, structural genom 80.67
2em3_A46 Zinc finger protein 28 homolog; ZF-C2H2, structura 80.64
2em9_A46 Zinc finger protein 224; ZF-C2H2, structural genom 80.62
2ely_A46 Zinc finger protein 224; DNA-binding, metal-bindin 80.52
2yto_A46 Zinc finger protein 484; ZF-C2H2, structural genom 80.32
2eml_A46 Zinc finger protein 28 homolog; ZF-C2H2, structura 80.28
2eoz_A46 Zinc finger protein 473; ZF-C2H2, structural genom 80.27
2ene_A46 Zinc finger protein 347; ZF-C2H2, structural genom 80.16
2eoq_A46 Zinc finger protein 224; ZF-C2H2, structural genom 80.15
2elm_A37 Zinc finger protein 406; ZFAT zinc finger 1, struc 80.15
2em4_A46 Zinc finger protein 28 homolog; ZF-C2H2, structura 80.15
2eoe_A46 Zinc finger protein 347; ZF-C2H2, structural genom 80.15
2emk_A46 Zinc finger protein 28 homolog; ZF-C2H2, structura 80.07
2emz_A46 ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s 80.03
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A Back     alignment and structure
Probab=100.00  E-value=1.3e-81  Score=591.53  Aligned_cols=236  Identities=52%  Similarity=0.810  Sum_probs=228.9

Q ss_pred             CCccccCCCCceecceeEEEEEeeCCeEEEEEeecchhHHhhccCCCCchhhhhccccccccCCCccCChhhhhhh----
Q 042018            1 MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYSNVSKGILAKSKDLIQH----   76 (346)
Q Consensus         1 ms~~i~~P~~q~~LtNvavVRlkk~GkrFEIacypnkv~~~R~G~e~dldeVLq~~~VF~NvsKG~~A~~~dL~ka----   76 (346)
                      |+ +||||+||++||||+|||||++|+||||+||||+|.+||+|.++||+||||+++||+|+|||++||++||.++    
T Consensus         2 m~-~i~~P~~qi~ltnv~ivr~k~~g~~FEI~v~~~~v~~wr~g~~~~l~eVl~~~~VF~n~skG~~As~~~L~~~FGT~   80 (252)
T 2kdo_A            2 HM-SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTD   80 (252)
T ss_dssp             CS-CSCCCCCSSCTTSEEEEEEECSSCEEEEEEESSSGGGGGTTCCSCSSTTCCCCCEEEETTTTEEECHHHHHHHTSCS
T ss_pred             CC-CccCCCCcEEecceEEEEEEcCCcEEEEEECHHHHHHHHcCCCCCHHHHhCcceeeecCcccccCCHHHHHHhhCCC
Confidence            54 6999999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             -------hhcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHhhcCcccCCCCCHHHHHHHHH
Q 042018           77 -------LILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVI  149 (346)
Q Consensus        77 -------~IL~kGElQvs~~ER~~~le~~~r~I~~~Ia~~~VnP~T~rP~p~~~IE~Am~e~~~~Vdp~ksak~QalevI  149 (346)
                             +||+|||+|+|++||++++|+++||||++||+|||||+|+||||++|||+||+++||+|||++|+|+||+++|
T Consensus        81 d~~eii~~IL~kGe~Q~s~~eR~~~~e~k~r~Ii~~Ia~~~VnP~T~~P~p~~~IE~Am~e~~~~vdp~ksak~Qalevi  160 (252)
T 2kdo_A           81 DQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVI  160 (252)
T ss_dssp             CHHHHHHHHHHSSEECCCSSSSSSSCTTHHHHHHHHHHTTEECCTTSCTTCHHHHHHHHHHHSSCSSTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhCCcccCCCCCHHHHHHHHH
Confidence                   9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCccccceEEEEEecCcchhHHHHHHHhhcccceeecCCCCeEEEEEEecCCCchhHHHHhhhc---CceEEEE
Q 042018          150 RELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEIL  226 (346)
Q Consensus       150 k~L~~~iPI~ra~m~l~v~vp~~~~~~~~~~l~~~~~~v~~~e~~~~~~~~~~~I~pG~~r~l~~~v~~~---kG~~evl  226 (346)
                      |+|+++|||+||+|+++|++|.++++++++.|.+|...+++++|.++ |+++|+||||+|++|+++|+++   +|+++||
T Consensus       161 k~L~~~iPI~ra~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~evl  239 (252)
T 2kdo_A          161 KQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQ-LEIVCLIDPGCFREIDELIKKETKGKGSLEVL  239 (252)
T ss_dssp             HHHHHHSCCEEECCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSSB-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEEC
T ss_pred             HHhhhhCCeeeeeEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccCC-eEEEEEECCcchHHHHHHHHHhcCCCEEEEEE
Confidence            99999999999999999999999999999999999667888888766 9999999999999999999999   7789999


Q ss_pred             EeeeeecCCccc
Q 042018          227 AVSVHAEGDTSV  238 (346)
Q Consensus       227 ~~~~~~e~~~~~  238 (346)
                      ++++++||++.+
T Consensus       240 ~~~~~~~~~~~~  251 (252)
T 2kdo_A          240 NLKDVEEGDEKF  251 (252)
T ss_dssp             CCSSSCCCBSCC
T ss_pred             EEeeeecCcccc
Confidence            999999998765
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C Back     alignment and structure
>1nyn_A Hypothetical 12.0 kDa protein in NAM8-GAR1 intergenic region; hypothetical protein, structural genomics, PSI; NMR {Saccharomyces cerevisiae} SCOP: d.235.1.1 Back     alignment and structure
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Back     alignment and structure
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4 Back     alignment and structure
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Back     alignment and structure
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene} Back     alignment and structure
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus} Back     alignment and structure
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1 Back     alignment and structure
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus} Back     alignment and structure
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Back     alignment and structure
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A Back     alignment and structure
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus} Back     alignment and structure
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens} Back     alignment and structure
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens} Back     alignment and structure
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A Back     alignment and structure
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B Back     alignment and structure
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens} Back     alignment and structure
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Back     alignment and structure
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Back     alignment and structure
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1 Back     alignment and structure
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Back     alignment and structure
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens} Back     alignment and structure
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens} Back     alignment and structure
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 Back     alignment and structure
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens} Back     alignment and structure
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4 Back     alignment and structure
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Back     alignment and structure
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A Back     alignment and structure
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Back     alignment and structure
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Back     alignment and structure
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens} Back     alignment and structure
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Back     alignment and structure
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Back     alignment and structure
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Back     alignment and structure
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2 Back     alignment and structure
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Back     alignment and structure
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Back     alignment and structure
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A Back     alignment and structure
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Back     alignment and structure
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Back     alignment and structure
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Back     alignment and structure
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 346
d1t95a175 a.5.8.1 (A:87-161) Hypothetical protein AF0491, mi 2e-26
d1t95a276 d.235.1.2 (A:11-86) Hypothetical protein AF0491, N 4e-21
d1nyna_111 d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker 1e-09
d1zr9a167 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 0.002
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 75 Back     information, alignment and structure

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Hypothetical protein AF0491, middle domain
family: Hypothetical protein AF0491, middle domain
domain: Hypothetical protein AF0491, middle domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 97.8 bits (244), Expect = 2e-26
 Identities = 17/73 (23%), Positives = 37/73 (50%)

Query: 81  KGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSS 140
           +GE+Q+  ++R      + + I   + + T++  T  P+  S IER + E    +D   S
Sbjct: 2   EGEVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKS 61

Query: 141 SKKQALEVIRELQ 153
            + Q  ++++ L+
Sbjct: 62  VEAQVKDIVKALK 74
>d1t95a2 d.235.1.2 (A:11-86) Hypothetical protein AF0491, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 76 Back     information, alignment and structure
>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
d1t95a175 Hypothetical protein AF0491, middle domain {Archae 99.97
d1t95a276 Hypothetical protein AF0491, N-terminal domain {Ar 99.9
d1nyna_111 Hypothetical protein Yhr087W {Baker's yeast (Sacch 99.62
d1t95a373 Hypothetical protein AF0491, C-terminal domain {Ar 99.55
d1vi7a271 Hypothetical protein YigZ, C-terminal domain {Esch 95.17
d1zr9a167 Zinc finger protein 593, ZNF593 {Human (Homo sapie 94.4
d2dlqa330 GLI-Krueppel family member HKR3 {Mouse (Mus muscul 91.84
d2dy1a596 Elongation factor G (EF-G) {Thermus thermophilus, 91.73
d2bv3a589 Elongation factor G (EF-G) {Thermus thermophilus [ 91.27
d2adra129 ADR1 {Synthetic, based on Saccharomyces cerevisiae 89.92
d1zu1a255 dsRNA-binding protein ZFa (ZNF346, JAZ) {African c 89.53
d1bboa229 Enhancer binding protein {Human (Homo sapiens) [Ta 89.35
d1p7aa_37 Kruppel-like factor 3, Bklf {Mouse (Mus musculus) 89.29
d1zu1a172 dsRNA-binding protein ZFa (ZNF346, JAZ) {African c 89.01
d1srka_35 Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc 88.88
d1a1ia228 ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} 88.77
d1sp1a_29 Transcription factor sp1 {Human (Homo sapiens) [Ta 87.97
d2cota238 Zinc finger and SCAN domain-containing protein 16, 87.23
d1x6ea226 Zinc finger protein 24 {Human (Homo sapiens) [TaxI 86.91
d2ct1a236 Transcriptional repressor CTCF {Human (Homo sapien 86.84
d1a1ia328 ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} 85.88
d1x6ea133 Zinc finger protein 24 {Human (Homo sapiens) [TaxI 85.79
d2eppa153 PATZ1 {Human (Homo sapiens) [TaxId: 9606]} 84.13
d1n0ua5117 Elongation factor 2 (eEF-2) {Baker's yeast (Saccha 83.78
d1x6ha236 Transcriptional repressor CTCF {Human (Homo sapien 83.66
d2epsa139 PATZ1 {Human (Homo sapiens) [TaxId: 9606]} 83.11
d1zfda_32 SWI5 zinc-finger domains {Baker's yeast (Saccharom 81.66
d2dmda226 Zinc finger protein 64, ZFP68 {Human (Homo sapiens 81.23
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: Hypothetical protein AF0491, middle domain
family: Hypothetical protein AF0491, middle domain
domain: Hypothetical protein AF0491, middle domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=1.7e-31  Score=207.78  Aligned_cols=74  Identities=23%  Similarity=0.418  Sum_probs=72.8

Q ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcHHHHHHHHhhcCcccCCCCCHHHHHHHHHHHHHh
Q 042018           81 KGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQK  154 (346)
Q Consensus        81 kGElQvs~~ER~~~le~~~r~I~~~Ia~~~VnP~T~rP~p~~~IE~Am~e~~~~Vdp~ksak~QalevIk~L~~  154 (346)
                      |||+|||++||+.++|+++++||++|+++||||+||+|||++|||+||+++||+|||++|||+||+++|++|++
T Consensus         2 KGeiQls~~eR~~~~e~k~~~Ii~~I~~~~VnP~T~~P~p~~rIE~Al~e~~~~vdp~k~ak~Qa~~~ik~L~p   75 (75)
T d1t95a1           2 EGEVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKP   75 (75)
T ss_dssp             HSEECCCHHHHHHHHHHHHHHHHHHHHHHEEBTTTTBCCCHHHHHHHHHHTTCCCCTTSCSTTTHHHHHHHHTT
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHhCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999974
>d1t95a2 d.235.1.2 (A:11-86) Hypothetical protein AF0491, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Back     information, alignment and structure
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure