Citrus Sinensis ID: 042020

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MEVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADALKHLAQNSRFPSRLAVISFINQQSKLKCLHPRTHRIVSSSNSLDAKVYIAEKADAAKIIQYAKRNNITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMSQRRLPWVGNTRYLPGLCS
cccccEEEEEEcccEEEEccHHHHHHccHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
ccccccEEEEEcccEEEEEccccccccHHHHHHHHEccccccccEEEEEccccccHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEEcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHccccccHHHHHHHHHHHHcccccHHHHHHHHHHccHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
mevccdlevdvngeetFMVDKKILASFSGRFNKLfsglngstsnlkvifhdfpggaeGFELIARYCYSLGKIKITASNIVLLSCAARFMemggdghgnlNLIDQIEKSLEEISYWTWPELLVALKQCQvllpttdylfvPEKVLSGLVERIALSfvaspytsfsgyfnstfqfsgdteRCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYrksrfcsasqveKCKMTEVVINLLSLldrstpsckSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATldyllvpspcgkdyiydVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYlaevspdshlkpsKFVALLKVlpdftrqshdglYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADALKHLaqnsrfpsrLAVISFINQqsklkclhprthrivsssnsLDAKVYIAEKADAAKIIQYAKRNNITTTTEKFEAQFRGMQRKVMELEKICSIMQTEmgnmsqrrlpwvgntrylpglcs
mevccdlevdvngeetfmVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADALKHLAQNSRFPSRLAVISFINQQsklkclhprthrivsssnsldAKVYIAEKADAAKIIQYakrnnittttEKFEAQFRGMQRKVMELEKICSIMQTemgnmsqrrlpwvgntrylpglcs
MEVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADALKHLAQNSRFPSRLAVISFINQQSKLKCLHPRTHRIVSSSNSLDAKVYIAEKADAAKIIQYAKRNNITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMSQRRLPWVGNTRYLPGLCS
**VCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADALKHLAQNSRFPSRLAVISFINQQSKLKCLHPRTHRIVSSSNSLDAKVYIAEKADAAKIIQYAKRNNITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMSQRRLPWVGNTRYLP****
MEVCCDLEVDVNGEETFMVDKKILASFSGRFNK*F***********VIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFS***********************RQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPSPCGKDYIYDVSLVLRLVKV******************GLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHA*****EKLRVCSALKYEKLSADALKHLAQNSRFPSRLAVISFINQQS******************************************************************************************YLPGLCS
MEVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADALKHLAQNSRFPSRLAVISFINQQSKLKCLHPRTHRIVSSSNSLDAKVYIAEKADAAKIIQYAKRNNITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMSQRRLPWVGNTRYLPGLCS
*EVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALS*********************************RQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADALKHLAQNSRFPSRLAVISFINQQSKLKCLHP**********************************NITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMS******************
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MEVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADALKHLAQNSRFPSRLAVISFINQQSKLKCLHPRTHRIVSSSNSLDAKVYIAEKADAAKIIQYAKRNNITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMSQRRLPWVGNTRYLPGLCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query538 2.2.26 [Sep-21-2011]
Q9C5J4506 BTB/POZ domain-containing yes no 0.890 0.946 0.398 1e-107
Q9LT24554 BTB/POZ domain-containing no no 0.808 0.785 0.333 8e-64
Q8RXR6525 BTB/POZ domain-containing no no 0.786 0.805 0.310 4e-56
Q9FKB6614 BTB/POZ domain-containing no no 0.791 0.693 0.331 3e-52
Q9C9Z7617 BTB/POZ domain-containing no no 0.789 0.688 0.301 4e-51
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.767 0.709 0.317 9e-50
O82253635 BTB/POZ domain-containing no no 0.780 0.661 0.311 3e-48
Q9LYW0592 BTB/POZ domain-containing no no 0.914 0.831 0.277 1e-47
Q9FYC8651 BTB/POZ domain-containing no no 0.910 0.752 0.264 2e-47
Q9S9Q9665 BTB/POZ domain-containing no no 0.934 0.756 0.283 4e-47
>sp|Q9C5J4|Y3210_ARATH BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana GN=At3g22104 PE=2 SV=1 Back     alignment and function desciption
 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/520 (39%), Positives = 316/520 (60%), Gaps = 41/520 (7%)

Query: 1   MEVCC-DLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGF 59
           ME CC DLEVD+NGE+T  ++K+I+ ++SG   KL      S+ NLKVIF+DFPGGAE F
Sbjct: 1   MEACCSDLEVDINGEQTIFLNKQIICAYSGTLRKLLGKSTSSSGNLKVIFNDFPGGAESF 60

Query: 60  ELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPE 119
           E ++R+CY+ G++ +  SN+V L CAA+FME+         +++Q EK +EEI YW WPE
Sbjct: 61  EFVSRFCYNDGRVAVMPSNVVFLHCAAKFMEVT-------KVLEQTEKCMEEIRYWAWPE 113

Query: 120 LLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGYF--NSTFQFSGDT 177
           +L+ LKQCQ +  + +   +  K++  LVE++ L+   SP ++ S     +S F+FS D+
Sbjct: 114 VLLCLKQCQEVETSPEVDSLAAKLMDALVEKLCLTIEMSPSSAGSACSPDSSLFRFSCDS 173

Query: 178 ERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSA 237
           +  +S  N   +  WWF++++ L+   V+   K+M+ + F++ +I +FL +Y+K +FCSA
Sbjct: 174 KSTESFKNCSVRLTWWFDEVLVLSSGLVEMFLKLMVLRKFDNLIISRFLFYYQKVKFCSA 233

Query: 238 SQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQA 297
           S  EK K+ E +I+ L +LDRS   CKSLF +  +AL L I++    KLE +IG QLDQA
Sbjct: 234 SSHEKRKILETIIDTLCVLDRSCVPCKSLFAVLRLALGLNINKSCMNKLEVMIGHQLDQA 293

Query: 298 TLDYLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDS 357
           TLD LLVPSP    ++Y V+LVLR  K FL   RS L   +L KV+ L+D Y+AEV+PD 
Sbjct: 294 TLDNLLVPSPSKSSHLYYVNLVLRFTKAFLDGARSGL---QLKKVSSLIDQYIAEVAPDP 350

Query: 358 HLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADA 417
            LKPSKF++L+ ++PD  R+SH+ +Y  +DMYL+ H G  + EKL +   L YEKLS ++
Sbjct: 351 CLKPSKFLSLITLVPDSARESHEDIYRAIDMYLEAHTGTTDGEKLNLIRTLSYEKLSGES 410

Query: 418 LKHLAQNSRFPSRLAVISFINQQSKLKCLHPRTHRIVSSSNSLD-AKVYIAEKADAAKII 476
             H+++N +F                            +  +LD  +    ++    ++I
Sbjct: 411 RAHISRNQKF---------------------------QAIETLDEQQQQQQQQQQQKQLI 443

Query: 477 QYAKRNNITTTTEKFEAQFRGMQRKVMELEKICSIMQTEM 516
              ++   +   EK +    G+Q +VMELE+ C  MQ +M
Sbjct: 444 LRMEKVETSGENEKLKEHIEGIQWRVMELERACLKMQNQM 483
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LT24|Y3985_ARATH BTB/POZ domain-containing protein At3g19850 OS=Arabidopsis thaliana GN=At3g19850 PE=2 SV=1 Back     alignment and function description
>sp|Q8RXR6|Y1028_ARATH BTB/POZ domain-containing protein At1g50280 OS=Arabidopsis thaliana GN=At1g50280 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description
>sp|O82253|SETH6_ARATH BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
297744881535 unnamed protein product [Vitis vinifera] 0.983 0.988 0.540 1e-153
147782261533 hypothetical protein VITISV_004813 [Viti 0.979 0.988 0.542 1e-152
359496575 1826 PREDICTED: uncharacterized protein LOC10 0.964 0.284 0.543 1e-152
359485707544 PREDICTED: BTB/POZ domain-containing pro 1.0 0.988 0.522 1e-152
255549285542 Root phototropism protein, putative [Ric 1.0 0.992 0.511 1e-147
356517604543 PREDICTED: BTB/POZ domain-containing pro 0.992 0.983 0.466 1e-134
356542854540 PREDICTED: BTB/POZ domain-containing pro 0.988 0.985 0.469 1e-133
224116310502 predicted protein [Populus trichocarpa] 0.933 1.0 0.488 1e-133
255555089 1803 zinc finger protein, putative [Ricinus c 0.933 0.278 0.509 1e-132
224132942515 predicted protein [Populus trichocarpa] 0.957 1.0 0.468 1e-129
>gi|297744881|emb|CBI38340.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 294/544 (54%), Positives = 371/544 (68%), Gaps = 15/544 (2%)

Query: 1   MEVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFE 60
           M  CCDLEVDVNGEETF++DKKIL +FS + ++LFSGL      LKVI  DFPGGAEGFE
Sbjct: 1   MGFCCDLEVDVNGEETFLLDKKILITFSSKLSRLFSGLTRKAGTLKVILPDFPGGAEGFE 60

Query: 61  LIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPEL 120
           LIAR+CY+ G+ +I+  N VLL+CAA FMEM     G  +L+ Q EKSLEEI+ WTW +L
Sbjct: 61  LIARFCYNNGRAEISPVNAVLLNCAACFMEMDQVCSGTPSLLHQTEKSLEEINSWTWSQL 120

Query: 121 LVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGYFNSTFQFSGDTERC 180
           LVALKQCQ LLP  +   + +K+L  LV R+AL  V SP T  S    S+FQ S D+   
Sbjct: 121 LVALKQCQDLLPAMNSSCLLQKILDSLVGRLALPSVVSPCTPSSSSGCSSFQLSSDSRST 180

Query: 181 DSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQV 240
           DS+ N   +  WWFEDL+FLN D +DKV KMM++Q  +H  + +FL +Y+KSRF  A   
Sbjct: 181 DSVKNSWSRTTWWFEDLVFLNADLIDKVIKMMVSQKLDHVTLSRFLFYYQKSRFLIAGPA 240

Query: 241 EKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLD 300
           EK K TEVV+ LLS LDRS+ SCK L++I  +ALSLK+S+  +  LESLIGSQLDQATLD
Sbjct: 241 EKSKTTEVVVTLLSSLDRSSVSCKGLYDILRMALSLKVSKCCKNILESLIGSQLDQATLD 300

Query: 301 YLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDSHLK 360
            LLVPSP GK  IY V+LVLRL+K FL       S ++L KVA L+D Y+AEV+PDS LK
Sbjct: 301 NLLVPSPHGKGCIYYVNLVLRLLKSFL---GGQFSSTQLKKVAALMDLYIAEVAPDSSLK 357

Query: 361 PSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADALKH 420
           P+KFVAL+  LPD  R S+DG+Y   D+YL+VH GL EEEK+ VC AL YEKLS +AL+H
Sbjct: 358 PTKFVALVAALPDSARDSYDGIYQATDIYLEVHGGLSEEEKMTVCCALNYEKLSPEALRH 417

Query: 421 LAQNSRFPSRLAVISFI-NQQSKLKCLHPRTHRIVSSSNSLDAKVYIAE-----KADAAK 474
           LA+NS+ PSR A  + I +QQ+KLK L P TH +   S S  A  Y  E     K D  +
Sbjct: 418 LARNSKLPSRAAAKAVITSQQTKLKSLLPNTHPLKDFSYS--ASCYTIEGSKDKKGDLDQ 475

Query: 475 IIQYAKRNNITTTTEKFEAQFRGMQRKVMELEKICSIMQTEMGNMSQRRLPWVGNTRYLP 534
           I+ + ++  ++T  E+  A  +GMQ +V+ELEK C  MQT M +M + RL      R LP
Sbjct: 476 ILLHVRKIELSTENERLRAHLQGMQWRVIELEKACKGMQTRMEHMMKSRL----QARSLP 531

Query: 535 GLCS 538
            LCS
Sbjct: 532 KLCS 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147782261|emb|CAN76303.1| hypothetical protein VITISV_004813 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496575|ref|XP_002271481.2| PREDICTED: uncharacterized protein LOC100263747 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359485707|ref|XP_002281337.2| PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Vitis vinifera] gi|296081221|emb|CBI17965.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255549285|ref|XP_002515696.1| Root phototropism protein, putative [Ricinus communis] gi|223545133|gb|EEF46643.1| Root phototropism protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356517604|ref|XP_003527477.1| PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Glycine max] Back     alignment and taxonomy information
>gi|356542854|ref|XP_003539880.1| PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Glycine max] Back     alignment and taxonomy information
>gi|224116310|ref|XP_002317266.1| predicted protein [Populus trichocarpa] gi|222860331|gb|EEE97878.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255555089|ref|XP_002518582.1| zinc finger protein, putative [Ricinus communis] gi|223542427|gb|EEF43969.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224132942|ref|XP_002327917.1| predicted protein [Populus trichocarpa] gi|222837326|gb|EEE75705.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
TAIR|locus:2095637506 AT3G22104 [Arabidopsis thalian 0.923 0.982 0.398 5.1e-106
TAIR|locus:2092301554 AT3G19850 [Arabidopsis thalian 0.635 0.617 0.314 3.3e-71
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.789 0.692 0.333 1.7e-50
TAIR|locus:2077992569 AT3G50840 [Arabidopsis thalian 0.920 0.869 0.295 1.6e-47
TAIR|locus:2077763617 AT3G08570 [Arabidopsis thalian 0.578 0.504 0.286 6.2e-46
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.382 0.348 0.333 6.7e-44
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.799 0.711 0.283 1.9e-42
TAIR|locus:2028160 665 AT1G30440 [Arabidopsis thalian 0.407 0.329 0.283 8e-42
TAIR|locus:2077868582 AT3G08660 [Arabidopsis thalian 0.498 0.460 0.315 1.3e-41
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.343 0.247 0.313 5.8e-41
TAIR|locus:2095637 AT3G22104 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 980 (350.0 bits), Expect = 5.1e-106, Sum P(2) = 5.1e-106
 Identities = 207/519 (39%), Positives = 319/519 (61%)

Query:     1 MEVCC-DLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGF 59
             ME CC DLEVD+NGE+T  ++K+I+ ++SG   KL      S+ NLKVIF+DFPGGAE F
Sbjct:     1 MEACCSDLEVDINGEQTIFLNKQIICAYSGTLRKLLGKSTSSSGNLKVIFNDFPGGAESF 60

Query:    60 ELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPE 119
             E ++R+CY+ G++ +  SN+V L CAA+FME+         +++Q EK +EEI YW WPE
Sbjct:    61 EFVSRFCYNDGRVAVMPSNVVFLHCAAKFMEV-------TKVLEQTEKCMEEIRYWAWPE 113

Query:   120 LLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGYF--NSTFQFSGDT 177
             +L+ LKQCQ +  + +   +  K++  LVE++ L+   SP ++ S     +S F+FS D+
Sbjct:   114 VLLCLKQCQEVETSPEVDSLAAKLMDALVEKLCLTIEMSPSSAGSACSPDSSLFRFSCDS 173

Query:   178 ERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSA 237
             +  +S  N   +  WWF++++ L+   V+   K+M+ + F++ +I +FL +Y+K +FCSA
Sbjct:   174 KSTESFKNCSVRLTWWFDEVLVLSSGLVEMFLKLMVLRKFDNLIISRFLFYYQKVKFCSA 233

Query:   238 SQVEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQA 297
             S  EK K+ E +I+ L +LDRS   CKSLF +  +AL L I++    KLE +IG QLDQA
Sbjct:   234 SSHEKRKILETIIDTLCVLDRSCVPCKSLFAVLRLALGLNINKSCMNKLEVMIGHQLDQA 293

Query:   298 TLDYLLVPSPCGKDYIYDVSLVLRLVKVFLFENRSWLSMSRLNKVAGLVDSYLAEVSPDS 357
             TLD LLVPSP    ++Y V+LVLR  K FL   RS L   +L KV+ L+D Y+AEV+PD 
Sbjct:   294 TLDNLLVPSPSKSSHLYYVNLVLRFTKAFLDGARSGL---QLKKVSSLIDQYIAEVAPDP 350

Query:   358 HLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSALKYEKLSADA 417
              LKPSKF++L+ ++PD  R+SH+ +Y  +DMYL+ H G  + EKL +   L YEKLS ++
Sbjct:   351 CLKPSKFLSLITLVPDSARESHEDIYRAIDMYLEAHTGTTDGEKLNLIRTLSYEKLSGES 410

Query:   418 LKHLAQNSRFPSRLAVISFINQQSKL---KCLHPRTHRIVSSSNSLDAKVYIAEKADAAK 474
               H+++N +F +   +     QQ +    K L  R  ++ +S  +   K +I        
Sbjct:   411 RAHISRNQKFQAIETLDEQQQQQQQQQQQKQLILRMEKVETSGENEKLKEHIEGIQWRVM 470

Query:   475 IIQYA---KRNNITTTTEKFEAQFRGMQRKVMELEKICS 510
              ++ A    +N +    ++ ++  +G  R    L K+CS
Sbjct:   471 ELERACLKMQNQMEVIKKRSKSSSKGSNRS---LPKLCS 506
GO:0004871 "signal transducer activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA
TAIR|locus:2092301 AT3G19850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077992 AT3G50840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077868 AT3G08660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C5J4Y3210_ARATHNo assigned EC number0.39800.89030.9466yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
pfam03000249 pfam03000, NPH3, NPH3 family 2e-67
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-06
pfam00651101 pfam00651, BTB, BTB/POZ domain 3e-06
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  217 bits (556), Expect = 2e-67
 Identities = 100/249 (40%), Positives = 146/249 (58%), Gaps = 22/249 (8%)

Query: 190 RRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHY---------RKSRFCSASQV 240
           R WWFEDL  L++D   +V   M ++  + ++I + L+HY         R       S+ 
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRSGSSEEDSEE 60

Query: 241 EKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLD 300
           E+  + E +++LL   ++ + SC  LF +   A+ L  S   R++LE  IG QLDQATLD
Sbjct: 61  EQRALLETIVSLLPS-EKGSVSCSFLFKLLRAAIILGASESCREELERRIGLQLDQATLD 119

Query: 301 YLLVPS-PCGKDYIYDVSLVLRLVKVFL-----------FENRSWLSMSRLNKVAGLVDS 348
            LL+PS   G++ +YDV LV R+++VFL            ++ +  S S L KVA LVD 
Sbjct: 120 DLLIPSGYSGEETLYDVDLVQRILEVFLSRDAATQSSDDEDSEASPSSSSLLKVAKLVDG 179

Query: 349 YLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEEEKLRVCSAL 408
           YLAE++PD +LK SKF+AL + +PD  R SHDGLY  +D+YL+ H  L E EK R+C  +
Sbjct: 180 YLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLSESEKKRLCRLM 239

Query: 409 KYEKLSADA 417
             +KLS +A
Sbjct: 240 DCQKLSQEA 248

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 538
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.96
PHA02713557 hypothetical protein; Provisional 99.95
PHA02790480 Kelch-like protein; Provisional 99.93
PHA03098534 kelch-like protein; Provisional 99.91
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.7
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.62
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.41
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.25
KOG4591280 consensus Uncharacterized conserved protein, conta 98.78
KOG4682488 consensus Uncharacterized conserved protein, conta 98.45
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.28
KOG07831267 consensus Uncharacterized conserved protein, conta 98.19
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.94
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.23
KOG2716230 consensus Polymerase delta-interacting protein PDI 96.57
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.45
KOG3473112 consensus RNA polymerase II transcription elongati 96.39
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 95.88
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 95.68
KOG2838401 consensus Uncharacterized conserved protein, conta 95.66
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 94.76
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 94.21
KOG2838401 consensus Uncharacterized conserved protein, conta 89.76
KOG0511516 consensus Ankyrin repeat protein [General function 80.96
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=5.1e-84  Score=646.40  Aligned_cols=228  Identities=47%  Similarity=0.772  Sum_probs=217.6

Q ss_pred             CccchhhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhhhcCCCc----------------chHHHhHHHHHHHHhh
Q 042020          190 RRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSA----------------SQVEKCKMTEVVINLL  253 (538)
Q Consensus       190 ~~WW~EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak~~l~~~----------------~~~~~r~LLE~Vv~lL  253 (538)
                      +||||||++.|++++|+|||.+|+++|+++++|+++|++||++|+|+.                ...++|.+||+||+||
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL   80 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL   80 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence            489999999999999999999999999999999999999999999987                4678999999999999


Q ss_pred             cccCCCCCChhhHHHHHHHhhhcccCHHHHHHHHHHHhccccccCcccccccC-CCCCCccchhHHHHHHHHHHHhccc-
Q 042020          254 SLLDRSTPSCKSLFNIFHVALSLKISRIYRKKLESLIGSQLDQATLDYLLVPS-PCGKDYIYDVSLVLRLVKVFLFENR-  331 (538)
Q Consensus       254 p~~~~~~vs~~fL~~LLr~a~~l~as~~cr~~LE~rIg~qLd~AtldDLLips-~~~~~~~ydvd~v~ri~~~Fl~~~~-  331 (538)
                      |+ +++++||+|||+|||+|+++++|..||.+||+|||.|||||||||||||+ +++.+|+||||+|+|||++|+.+.+ 
T Consensus        81 P~-e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~  159 (258)
T PF03000_consen   81 PP-EKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEE  159 (258)
T ss_pred             CC-CCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhcccc
Confidence            76 99999999999999999999999999999999999999999999999999 4466699999999999999998731 


Q ss_pred             ------------cccchhHHHHHHhhhhhhhhhccCCCCCChhHHHHHHHhcCCccccccchhhHHHHHHHHhcCCCCHH
Q 042020          332 ------------SWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDGLYHTMDMYLQVHAGLCEE  399 (538)
Q Consensus       332 ------------~~~~~~~~~~VakLvD~yLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DgLYrAIDiyLk~Hp~ls~~  399 (538)
                                  ...+.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||+||++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~  239 (258)
T PF03000_consen  160 AGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEE  239 (258)
T ss_pred             cccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHH
Confidence                        24567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccccccccCCHHHH
Q 042020          400 EKLRVCSALKYEKLSADAL  418 (538)
Q Consensus       400 Er~~lC~~ldc~KLS~eac  418 (538)
                      ||++||++|||||||+|||
T Consensus       240 Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  240 ERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             HHHHHHhhCCcccCCcccC
Confidence            9999999999999999998

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 1e-08
2vpk_A116 Myoneurin; transcription regulation, transcription 1e-08
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-08
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 3e-08
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 4e-08
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 5e-08
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 6e-08
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 7e-08
3b84_A119 Zinc finger and BTB domain-containing protein 48; 7e-08
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 9e-08
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 5e-07
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 2e-06
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 2e-05
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 5e-05
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 6e-05
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 72/538 (13%), Positives = 154/538 (28%), Gaps = 180/538 (33%)

Query: 2   EVCCDLEVD--------------VNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKV 47
           +VC   +V                N  ET +   ++L     + +  ++  +  +SN+K+
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---EMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 48  IFHDFPGGAEGFELIARYCYSLGKIKITASNIVLLSCAARFMEMGGDGHGNLNLIDQIEK 107
             H              Y   L         +VL                       +  
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL---------LVL---------------------LNV-- 253

Query: 108 SLEEISYWTWPELLVALK-QCQVLLPTTDYLFVPEKVLSGLVERIALSFVASPYTSFSGY 166
                      +   A    C++LL TT +  V + + +     I+L   +   T     
Sbjct: 254 -------QN-AKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTP---- 300

Query: 167 FNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVD------KVSKMMITQNFEHD 220
                         D + ++  +         +L+    D        +   ++      
Sbjct: 301 --------------DEVKSLLLK---------YLDCRPQDLPREVLTTNPRRLS------ 331

Query: 221 LICKFLLHYRKSRFCSASQVEKCKMTEVVINLLSLLDRSTPSCKSLFN---IFHVALSLK 277
           +I +  +    + + +   V   K+T ++ + L++L+      + +F+   +F    S  
Sbjct: 332 IIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLSVFPP--SAH 386

Query: 278 ISRIYRKKLESL---IGSQLDQATLDYLLVPSPCGKD------YIYDVSLVLRLVKVFLF 328
           I       L  +   +        ++ L   S   K        I  + L L++      
Sbjct: 387 IP---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----KL 439

Query: 329 ENRSWLSMSRLNKVAGLVDSYLAEVSPDSHLKPSKFVALLKVLPDFTRQSHDG-LYHTMD 387
           EN        L++   +VD Y    + DS               D      D   Y    
Sbjct: 440 ENE-----YALHRS--IVDHYNIPKTFDSD--------------DLIPPYLDQYFYS--- 475

Query: 388 MYLQVHAGLCE------------------EEKLR-VCSALKYEKLSADAL-------KHL 421
            ++  H    E                  E+K+R   +A        + L        ++
Sbjct: 476 -HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 422 AQNSRFPSRL--AVISFINQQSKLKCLHPRTHRIVSSSNSLDAKVYIAEKADAAKIIQ 477
             N     RL  A++ F+ +  +   +  +   ++  +   + +    E   A K +Q
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEE-NLICSKYTDLLRIALMAEDEAIFEE---AHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.95
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.85
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.85
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.84
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.84
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.83
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.83
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.82
2vpk_A116 Myoneurin; transcription regulation, transcription 99.82
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.82
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.81
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.81
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.81
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.81
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.8
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.79
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.78
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.72
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.49
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.32
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.1
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.93
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.53
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.5
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.4
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.96
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.53
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 96.54
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.37
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.79
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 93.1
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 92.15
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 91.15
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 89.39
3vmx_A48 Voltage-gated hydrogen channel 1; coiled-coil, ION 81.98
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.96  E-value=6.8e-30  Score=253.47  Aligned_cols=225  Identities=14%  Similarity=0.061  Sum_probs=166.2

Q ss_pred             CcceeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCC--CCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechhhH
Q 042020            2 EVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNG--STSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNI   79 (538)
Q Consensus         2 ~~~~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~--e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV   79 (538)
                      +.+|||+|.| ||+.|++||.+|+++|+||++||++++.  ++....|.|++++  +++|+.+++|+|| |++.++.+||
T Consensus        29 ~~~~Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt-~~~~i~~~~v  104 (256)
T 3hve_A           29 SRFCDAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFS-GQIRLNEDTI  104 (256)
T ss_dssp             -CCCCEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHH-SCCCCC-CCH
T ss_pred             CCCcceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccC-CCCcccHhHH
Confidence            4689999999 7899999999999999999999998765  5566789999998  8999999999999 8999999999


Q ss_pred             HhHHHHHhhhcccCCCCCcchHHHHHHHHHHHhhcCchhhHHHHHhcccchHhhhhhhCchhhhHHHHHHHHhhcccCCC
Q 042020           80 VLLSCAARFMEMGGDGHGNLNLIDQIEKSLEEISYWTWPELLVALKQCQVLLPTTDYLFVPEKVLSGLVERIALSFVASP  159 (538)
Q Consensus        80 ~~L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~~v~~sw~~~la~L~~C~~l~~~Ae~~~iv~rci~sLa~ka~~~~~~s~  159 (538)
                      ..++.||++|||++       |.+.|++||.+.+.+         .||..++.+|+.|++     +.|..++....    
T Consensus       105 ~~ll~~A~~l~i~~-------l~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~-----~~L~~~~~~~i----  159 (256)
T 3hve_A          105 QDVVQAADLLLLTD-------LKTLCCEFLEGCIAA---------ENCIGIRDFALHYCL-----HHVHYLATEYL----  159 (256)
T ss_dssp             HHHHHHHHHHTCHH-------HHHHHHHHHHHTCCS---------STTHHHHHHHHHTTC-----HHHHHHHHHHH----
T ss_pred             HHHHHHHHHHChHH-------HHHHHHHHHHhhCCH---------hhHHHHHHHHHHcCc-----HHHHHHHHHHH----
Confidence            99999999999997       999999999998854         588888999999876     55555543321    


Q ss_pred             CccCCCCCCccccccCCCcccccccccccCCccchhhcccCChhHHHHHHHHHhhcCCChHHHHHHHHhhhhhcCCCcch
Q 042020          160 YTSFSGYFNSTFQFSGDTERCDSLMNICRQRRWWFEDLMFLNVDFVDKVSKMMITQNFEHDLICKFLLHYRKSRFCSASQ  239 (538)
Q Consensus       160 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~~d~~~rvI~am~~~g~~~e~I~~aL~~Yak~~l~~~~~  239 (538)
                                ..+|               ...+-.++|..|+.+.+..+++...-...+|+.|+++++.|+++..+.+ .
T Consensus       160 ----------~~~f---------------~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R-~  213 (256)
T 3hve_A          160 ----------ETHF---------------RDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIR-K  213 (256)
T ss_dssp             ----------HHHH---------------HHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCS-T
T ss_pred             ----------HHHH---------------HHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHH-H
Confidence                      0112               0112257899999999888887766655578899999999999875532 3


Q ss_pred             HHHhHHHHHHHHhhcccCCCCCChhhHHHHHHHhhhcccC-HHHHHHHHH
Q 042020          240 VEKCKMTEVVINLLSLLDRSTPSCKSLFNIFHVALSLKIS-RIYRKKLES  288 (538)
Q Consensus       240 ~~~r~LLE~Vv~lLp~~~~~~vs~~fL~~LLr~a~~l~as-~~cr~~LE~  288 (538)
                      .....|++.|+       .+.+|+.||.+.++...++..+ +.|+..|++
T Consensus       214 ~~~~~ll~~VR-------f~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          214 VHMKDVMSALW-------VSGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             TTHHHHHHHHH-------HHTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             HHHHHHHHhCC-------CCCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence            34568999995       3679999999999999999998 789998875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.84
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.84
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.67
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.65
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.78
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.76
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.89
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 94.02
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 93.77
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-21  Score=171.56  Aligned_cols=99  Identities=20%  Similarity=0.432  Sum_probs=91.0

Q ss_pred             CcceeEEEEecCceeEEchHHHHhhccHHHHHhhcCCCCCCCCceEEecCCCCCHHHHHHHHHHHhhcCeeeechhhHHh
Q 042020            2 EVCCDLEVDVNGEETFMVDKKILASFSGRFNKLFSGLNGSTSNLKVIFHDFPGGAEGFELIARYCYSLGKIKITASNIVL   81 (538)
Q Consensus         2 ~~~~Dv~i~V~g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~v~L~~~pgG~e~felv~~FcY~~~~i~it~~NV~~   81 (538)
                      +.+|||+|.| +|++|++||.+|+++|+||++||.+.+.++....+.+++++  +++|+.+++|+|| |++.++.+||..
T Consensus        23 ~~~~Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Yt-g~~~i~~~~v~~   98 (122)
T d1r29a_          23 DILTDVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYT-SRLNLREGNIMA   98 (122)
T ss_dssp             TCSCCEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHH-SCCCCCTTTHHH
T ss_pred             CCCeEEEEEE-CCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcC-CeecCchhhHHH
Confidence            4799999999 77899999999999999999999988777666666678888  7899999999999 899999999999


Q ss_pred             HHHHHhhhcccCCCCCcchHHHHHHHHHHH
Q 042020           82 LSCAARFMEMGGDGHGNLNLIDQIEKSLEE  111 (538)
Q Consensus        82 L~cAA~~LqM~e~~~~~~NL~~~ce~FL~~  111 (538)
                      ++.||++|||.+       |++.|++||+.
T Consensus        99 ll~~A~~l~i~~-------L~~~C~~~L~~  121 (122)
T d1r29a_          99 VMATAMYLQMEH-------VVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHTTCHH-------HHHHHHHHHHT
T ss_pred             HHHHHHHHCcHH-------HHHHHHHHHHh
Confidence            999999999996       99999999975
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure