Citrus Sinensis ID: 042047

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCGAVESRP
Secondary Structure (PSIPRED)
ccccccEEEccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEcccccHHHHHHHccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcHHHHccHHHHHHHHHHHHHcccccccccccEEEEEEcccccEEEEccccHHHHHHHHHHHEEEcccHccccc
Coil and Loop (DISEMBL)
MEGVGIARKINLSLYNSFETLANSLIHMFATYQksekrgvrytltyqdkegdwliagdvpwQTFIESVQRLEILRcgavesrp
Flexible Loop (DISEMBL)
MEGVGIARKINLSLYNSFETLANSLIHMFATyqksekrgVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCGAVESRP
Low Complexity Region (SEG)
MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCGAVESRP
Disordered region (IsUnstruct)
****GIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCGA*****
Disordered Region (DISOPRED)
*EGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEI**********
Disordered Region (DISEMBL)
MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCGAVESRP
Disordered Region (DISPRO)
**GVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCGAV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCGAVESRP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q93WC4	251	Auxin-responsive protein	yes	no	0.903	0.298	0.533	6e-20
Q8H174	158	Auxin-responsive protein	no	no	0.903	0.474	0.460	3e-15
Q38830	239	Auxin-responsive protein	no	no	0.891	0.309	0.435	1e-14
Q10D34	236	Auxin-responsive protein	yes	no	0.903	0.317	0.425	1e-14
A2XLV9	236	Auxin-responsive protein	N/A	no	0.903	0.317	0.425	1e-14
Q9XFM0	175	Auxin-responsive protein	no	no	0.915	0.434	0.428	6e-14
Q38831	247	Auxin-responsive protein	no	no	0.915	0.307	0.388	1e-13
P13089	243	Auxin-induced protein AUX	no	no	0.903	0.308	0.365	2e-13
Q5VRR0	183	Auxin-responsive protein	no	no	0.891	0.404	0.435	3e-13
P33077	186	Auxin-responsive protein	no	no	0.963	0.430	0.364	1e-12

>sp|Q93WC4|IAA29_ARATH Auxin-responsive protein IAA29 OS=Arabidopsis thaliana GN=IAA29 PE=2 SV=2

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 55/75 (73%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
           M+GV IARK+++ L+NS+E+L NSLI MF  Y+  ++    YT T+Q KEGDWL+ GDV 
Sbjct: 166 MDGVAIARKVDIKLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVT 225

Query: 61  WQTFIESVQRLEILR 75
           W+ F ESV R+ I+R
Sbjct: 226 WKIFAESVHRISIIR 240

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H174|IAA31_ARATH Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRY-TLTYQDKEGDWLIAGDV 59
           MEGV I RK++L +++ +E+L  +L HMF T      R  ++  LTY+DK+GDW++ GD+
Sbjct: 79  MEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHHVLTYEDKDGDWMMVGDI 138

Query: 60  PWQTFIESVQRLEILR 75
           PW  F+E+V+RL+I R
Sbjct: 139 PWDMFLETVRRLKITR 154

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38830|IAA12_ARATH Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 11/85 (12%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMF----ATYQKSEKRGVR-------YTLTYQDK 49
           M+GVGI RK+++  ++S+E LA +L  MF     T  + + + +R       + LTY+DK
Sbjct: 131 MDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTYEDK 190

Query: 50  EGDWLIAGDVPWQTFIESVQRLEIL 74
           EGDW++ GDVPW+ FI SV+RL I+
Sbjct: 191 EGDWMLVGDVPWRMFINSVKRLRIM 215

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10D34|IAA13_ORYSJ Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 5/80 (6%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKS-----EKRGVRYTLTYQDKEGDWLI 55
           M+G    RK++L +YNS++ L+ +L  MF T+  +     E  G     TY+DK+GDW++
Sbjct: 138 MDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNGSDAVTTYEDKDGDWML 197

Query: 56  AGDVPWQTFIESVQRLEILR 75
            GDVPWQ F+ES +RL I++
Sbjct: 198 VGDVPWQMFVESCKRLRIMK 217

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XLV9|IAA13_ORYSI Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 5/80 (6%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKS-----EKRGVRYTLTYQDKEGDWLI 55
           M+G    RK++L +YNS++ L+ +L  MF T+  +     E  G     TY+DK+GDW++
Sbjct: 138 MDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNGSDAVTTYEDKDGDWML 197

Query: 56  AGDVPWQTFIESVQRLEILR 75
            GDVPWQ F+ES +RL I++
Sbjct: 198 VGDVPWQMFVESCKRLRIMK 217

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9XFM0|IAA28_ARATH Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
           MEGV I RK+NLS YN+++ L++++  +F+  + S     +YTL Y+D EGD ++ GDVP
Sbjct: 87  MEGVPIGRKVNLSAYNNYQQLSHAVDQLFSK-KDSWDLNRQYTLVYEDTEGDKVLVGDVP 145

Query: 61  WQTFIESVQRLEILRCG 77
           W+ F+ +V+RL +L+  
Sbjct: 146 WEMFVSTVKRLHVLKTS 162

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38831|IAA13_ARATH Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 14/90 (15%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMF-----------ATYQKSEK---RGVRYTLTY 46
           M+GV I RK++L+ ++S+E LA +L  MF           + + K  +       + LTY
Sbjct: 136 MDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTY 195

Query: 47  QDKEGDWLIAGDVPWQTFIESVQRLEILRC 76
           +DKEGDW++ GDVPW+ FI SV+RL +++ 
Sbjct: 196 EDKEGDWMLVGDVPWRMFINSVKRLRVMKT 225

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 18/93 (19%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFA--TYQKSEKRGVR----------------Y 42
           M+G    RK++L +Y S+  L++SL  MF+  T+   E +G++                Y
Sbjct: 130 MDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLNDLLNSSDY 189

Query: 43  TLTYQDKEGDWLIAGDVPWQTFIESVQRLEILR 75
             TY+DK+GDW++ GDVPW+ F+ES +RL I++
Sbjct: 190 VPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMK 222

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|Q5VRR0|IAA20_ORYSJ Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica GN=IAA20 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 4/78 (5%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSE----KRGVRYTLTYQDKEGDWLIA 56
           MEG+ I RK++LS+  S+  L ++L  MF +  + +    +R   Y +TY+D EGDW+  
Sbjct: 105 MEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHPYAVTYEDGEGDWMQV 164

Query: 57  GDVPWQTFIESVQRLEIL 74
           GDVPW+ F +SV+RL+IL
Sbjct: 165 GDVPWEAFAKSVKRLKIL 182

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P33077|IAA4_ARATH Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 5/85 (5%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFA-----TYQKSEKRGVRYTLTYQDKEGDWLI 55
           M+G    RKI+L++Y  +  L  SL +MF       +++   +G  +  TY+DK+GDW++
Sbjct: 95  MDGAPYLRKIDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWML 154

Query: 56  AGDVPWQTFIESVQRLEILRCGAVE 80
            GDVPW+ F+ S +RL I++   V+
Sbjct: 155 VGDVPWEMFVSSCKRLRIMKGSEVK 179

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
224092498	229	predicted protein [Populus trichocarpa]	0.903	0.327	0.706	5e-24
359476140	889	PREDICTED: probable LRR receptor-like se	0.951	0.088	0.683	5e-24
296082047	227	unnamed protein product [Vitis vinifera]	0.939	0.343	0.692	8e-24
255548896	895	ATP binding protein, putative [Ricinus c	0.987	0.091	0.619	3e-22
365818557	227	IAA29 [Solanum lycopersicum]	0.903	0.330	0.56	4e-20
225445577	224	PREDICTED: auxin-responsive protein IAA2	0.903	0.334	0.589	1e-19
297738985	184	unnamed protein product [Vitis vinifera]	0.903	0.407	0.589	1e-19
365818563	196	IAA35 [Solanum lycopersicum]	0.867	0.367	0.613	3e-19
365818565	242	IAA36 [Solanum lycopersicum]	0.891	0.305	0.573	3e-19
449520179	234	PREDICTED: auxin-responsive protein IAA8	0.903	0.320	0.584	4e-19

>gi|224092498|ref|XP_002309635.1| predicted protein [Populus trichocarpa] gi|222855611|gb|EEE93158.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 62/75 (82%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
           MEGV I RKI+L LYNS++TL  SLI MFA  +  EK   RY+LTYQDK+GDWLIAGDVP
Sbjct: 152 MEGVAITRKIDLRLYNSYQTLTKSLISMFAKCKNLEKDAARYSLTYQDKDGDWLIAGDVP 211

Query: 61  WQTFIESVQRLEILR 75
           WQTF+ESVQRL+I+R
Sbjct: 212 WQTFMESVQRLKIVR 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476140|ref|XP_002282711.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 62/79 (78%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
           MEGV IARKINL LY S++ L NSL  MFA  +K +   V YTLTYQDKEGDWL+AGDVP
Sbjct: 150 MEGVAIARKINLKLYQSYQMLKNSLTAMFARCKKCDVDCVHYTLTYQDKEGDWLLAGDVP 209

Query: 61  WQTFIESVQRLEILRCGAV 79
           W+TFIESVQRLE++R G  
Sbjct: 210 WRTFIESVQRLELVRNGGC 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082047|emb|CBI21052.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 62/78 (79%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
           MEGV IARKINL LY S++ L NSL  MFA  +K +   V YTLTYQDKEGDWL+AGDVP
Sbjct: 150 MEGVAIARKINLKLYQSYQMLKNSLTAMFARCKKCDVDCVHYTLTYQDKEGDWLLAGDVP 209

Query: 61  WQTFIESVQRLEILRCGA 78
           W+TFIESVQRLE++R G 
Sbjct: 210 WRTFIESVQRLELVRNGG 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548896|ref|XP_002515504.1| ATP binding protein, putative [Ricinus communis] gi|223545448|gb|EEF46953.1| ATP binding protein, putative [Ricinus communis]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 65/84 (77%), Gaps = 2/84 (2%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGV-RYTLTYQDKEGDWLIAGDV 59
           MEGV IARKI+L L++S++TL N LI MF   +K +      YTLTYQDK+GDWL+AGDV
Sbjct: 153 MEGVAIARKIDLRLFHSYQTLTNFLISMFGKCEKGDDDSTTNYTLTYQDKDGDWLLAGDV 212

Query: 60  PWQTFIESVQRLEILRCGAVESRP 83
           PWQTF+ESVQRLE++R G +  RP
Sbjct: 213 PWQTFMESVQRLELVRNGGLP-RP 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365818557|gb|AEX00367.1| IAA29 [Solanum lycopersicum]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 59/75 (78%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
           MEGV I RK++L LY+S++    +L+ MFA YQ S K   R+T+ YQD+EGDW++AGDVP
Sbjct: 150 MEGVPIGRKVDLRLYHSYQLFTQNLLQMFARYQNSGKNSTRFTILYQDREGDWMLAGDVP 209

Query: 61  WQTFIESVQRLEILR 75
           W+TF+E+VQR+EI +
Sbjct: 210 WKTFVETVQRIEIQK 224

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445577|ref|XP_002285354.1| PREDICTED: auxin-responsive protein IAA29-like [Vitis vinifera]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 62/78 (79%), Gaps = 3/78 (3%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
           M GVGIARKI+LS ++S++TL N+LI+MF   Q+  +    + L YQD+EGDWL+AGDVP
Sbjct: 150 MVGVGIARKIDLSRHHSYQTLTNTLINMFGKCQQDAQS---FKLAYQDREGDWLLAGDVP 206

Query: 61  WQTFIESVQRLEILRCGA 78
           W+TFI+SV+RL+ILR G 
Sbjct: 207 WRTFIQSVERLKILRIGG 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738985|emb|CBI28230.3| unnamed protein product [Vitis vinifera]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 62/78 (79%), Gaps = 3/78 (3%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
           M GVGIARKI+LS ++S++TL N+LI+MF   Q+  +    + L YQD+EGDWL+AGDVP
Sbjct: 110 MVGVGIARKIDLSRHHSYQTLTNTLINMFGKCQQDAQS---FKLAYQDREGDWLLAGDVP 166

Query: 61  WQTFIESVQRLEILRCGA 78
           W+TFI+SV+RL+ILR G 
Sbjct: 167 WRTFIQSVERLKILRIGG 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365818563|gb|AEX00370.1| IAA35 [Solanum lycopersicum]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 62/75 (82%), Gaps = 3/75 (4%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
           MEGVGIARKI+L+L++S+  L ++LI MF    K+++ G  Y LTYQDKEGDWL+AGDVP
Sbjct: 121 MEGVGIARKIDLTLFHSYNKLTDTLISMFG---KNKEIGDVYKLTYQDKEGDWLLAGDVP 177

Query: 61  WQTFIESVQRLEILR 75
           W+TF+ SVQRL+++R
Sbjct: 178 WRTFVGSVQRLKLIR 192

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365818565|gb|AEX00371.1| IAA36 [Solanum lycopersicum]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 61/75 (81%), Gaps = 1/75 (1%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMF-ATYQKSEKRGVRYTLTYQDKEGDWLIAGDV 59
           MEGV I RKI+L LYNS++ L N+L+ MF  +++  ++   R+TL YQDKEGDW++AGDV
Sbjct: 149 MEGVAIGRKIDLMLYNSYQILTNTLLQMFNKSHESCDENDGRFTLLYQDKEGDWMLAGDV 208

Query: 60  PWQTFIESVQRLEIL 74
           PW+TF+E+VQR++IL
Sbjct: 209 PWETFMETVQRIQIL 223

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520179|ref|XP_004167111.1| PREDICTED: auxin-responsive protein IAA8-like [Cucumis sativus]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 2/77 (2%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFA--TYQKSEKRGVRYTLTYQDKEGDWLIAGD 58
           MEGV IARKI++ +YNS++TL  + I+MF+   YQK        TLTYQDKEGDWL+AGD
Sbjct: 153 MEGVPIARKIDVGMYNSYQTLKTASINMFSDSCYQKCGNSNASLTLTYQDKEGDWLLAGD 212

Query: 59  VPWQTFIESVQRLEILR 75
           +PWQ F+ESVQ ++I+R
Sbjct: 213 LPWQNFVESVQCMKIIR 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:2116505	251	IAA29 "indole-3-acetic acid in	0.903	0.298	0.533	2.5e-19
TAIR|locus:2090527	158	IAA31 "indole-3-acetic acid in	0.903	0.474	0.460	4.2e-15
TAIR|locus:2180557	175	IAA28 "AT5G25890" [Arabidopsis	0.891	0.422	0.44	4.9e-14
TAIR|locus:2197838	239	IAA12 "indole-3-acetic acid in	0.891	0.309	0.435	6.2e-14
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.445	0.156	0.486	7.2e-14
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.409	0.139	0.529	3e-13
TAIR|locus:2195820	267	IAA18 "indole-3-acetic acid in	0.481	0.149	0.525	3.4e-13
TAIR|locus:2139890	302	IAA11 "indole-3-acetic acid in	0.385	0.105	0.656	3.5e-13
UNIPROTKB|Q5VRR0	183	IAA20 "Auxin-responsive protei	0.891	0.404	0.461	4.4e-13
TAIR|locus:2088324	269	PAP1 "phytochrome-associated p	0.481	0.148	0.5	4.9e-13

TAIR|locus:2116505 IAA29 "indole-3-acetic acid inducible 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 40/75 (53%), Positives = 55/75 (73%)

Query:     1 MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
             M+GV IARK+++ L+NS+E+L NSLI MF  Y+  ++    YT T+Q KEGDWL+ GDV 
Sbjct:   166 MDGVAIARKVDIKLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVT 225

Query:    61 WQTFIESVQRLEILR 75
             W+ F ESV R+ I+R
Sbjct:   226 WKIFAESVHRISIIR 240

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2090527 IAA31 "indole-3-acetic acid inducible 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 35/76 (46%), Positives = 54/76 (71%)

Query:     1 MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRY-TLTYQDKEGDWLIAGDV 59
             MEGV I RK++L +++ +E+L  +L HMF T      R  ++  LTY+DK+GDW++ GD+
Sbjct:    79 MEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHHVLTYEDKDGDWMMVGDI 138

Query:    60 PWQTFIESVQRLEILR 75
             PW  F+E+V+RL+I R
Sbjct:   139 PWDMFLETVRRLKITR 154

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2180557 IAA28 "AT5G25890" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 33/75 (44%), Positives = 54/75 (72%)

Query:     1 MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVP 60
             MEGV I RK+NLS YN+++ L++++  +F+  + S     +YTL Y+D EGD ++ GDVP
Sbjct:    87 MEGVPIGRKVNLSAYNNYQQLSHAVDQLFSK-KDSWDLNRQYTLVYEDTEGDKVLVGDVP 145

Query:    61 WQTFIESVQRLEILR 75
             W+ F+ +V+RL +L+
Sbjct:   146 WEMFVSTVKRLHVLK 160

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2197838 IAA12 "indole-3-acetic acid inducible 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/85 (43%), Positives = 56/85 (65%)

Query:     1 MEGVGIARKINLSLYNSFETLANSLIHMF----ATYQKSEKRGVR-------YTLTYQDK 49
             M+GVGI RK+++  ++S+E LA +L  MF     T  + + + +R       + LTY+DK
Sbjct:   131 MDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTYEDK 190

Query:    50 EGDWLIAGDVPWQTFIESVQRLEIL 74
             EGDW++ GDVPW+ FI SV+RL I+
Sbjct:   191 EGDWMLVGDVPWRMFINSVKRLRIM 215

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048364 "root development" evidence=IMP

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
 Identities = 18/37 (48%), Positives = 29/37 (78%)

Query:    39 GVRYTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILR 75
             G  Y  TY+DK+GDW++ GDVPW+ F++S +R+ I++
Sbjct:   181 GSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMK 217

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
 Identities = 18/34 (52%), Positives = 28/34 (82%)

Query:    42 YTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILR 75
             Y  +Y+DK+GDW++ GDVPW+ F+ES +RL I++
Sbjct:   190 YVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMK 223

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2195820 IAA18 "indole-3-acetic acid inducible 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query:    42 YTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCGAVES 81
             YTLTY+D EGD ++ GDVPWQ F+ SV+RL +++   + S
Sbjct:   214 YTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSEISS 253

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2139890 IAA11 "indole-3-acetic acid inducible 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 21/32 (65%), Positives = 27/32 (84%)

Query:    44 LTYQDKEGDWLIAGDVPWQTFIESVQRLEILR 75
             LTY+DKEGDW++ GDVPW  FI SV+RL I++
Sbjct:   203 LTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMK 234

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

UNIPROTKB|Q5VRR0 IAA20 "Auxin-responsive protein IAA20" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 36/78 (46%), Positives = 53/78 (67%)

Query:     1 MEGVGIARKINLSLYNSFETLANSLIHMF-ATYQKS---EKRGVRYTLTYQDKEGDWLIA 56
             MEG+ I RK++LS+  S+  L ++L  MF +T Q+     +R   Y +TY+D EGDW+  
Sbjct:   105 MEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHPYAVTYEDGEGDWMQV 164

Query:    57 GDVPWQTFIESVQRLEIL 74
             GDVPW+ F +SV+RL+IL
Sbjct:   165 GDVPWEAFAKSVKRLKIL 182

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2088324 PAP1 "phytochrome-associated protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query:    42 YTLTYQDKEGDWLIAGDVPWQTFIESVQRLEILRCGAVES 81
             +TLTY+D EGD ++ GDVPWQ F+ SV+RL +++   + S
Sbjct:   216 FTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEISS 255

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	8e-25

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score = 90.8 bits (226), Expect = 8e-25
 Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 1   MEGVGIARKINLSLYNSFETLANSLIHMFATYQKSEKR------GVRYTLTYQDKEGDWL 54
           M+G    RK++L +Y S++ L+++L  MF+ +   E        G  Y  TY+DK+GDW+
Sbjct: 97  MDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIGESGLLDLLNGSEYVPTYEDKDGDWM 156

Query: 55  IAGDVPWQTFIESVQRLEILR 75
           + GDVPW+ F+ES +RL I++
Sbjct: 157 LVGDVPWEMFVESCKRLRIMK 177

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.75
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.56
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.52
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	97.22
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.21
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	97.14
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	96.82
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.79
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.79
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	96.08
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	96.03
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.78
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	92.46
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	91.24

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=9.3e-41  Score=240.68  Aligned_cols=80  Identities=45%  Similarity=0.909  Sum_probs=0.0

Q ss_pred             CCCcceeeeeccCCCCCHHHHHHHHHHHH---hhh----------hhcc-cCCCceEEEEEcCCCCeEEecCCChhHHhh
Q 042047            1 MEGVGIARKINLSLYNSFETLANSLIHMF---ATY----------QKSE-KRGVRYTLTYQDKEGDWLIAGDVPWQTFIE   66 (83)
Q Consensus         1 MeG~~igRkiDL~~~~sY~~L~~~L~~MF---~~~----------~~~~-~~~~~~~l~Y~D~eGD~mlvGD~PW~~F~~   66 (83)
                      |||+||||||||++|+||++|+.+|++||   .+.          +..+ .++++|+|||+|+||||||||||||++||+
T Consensus       116 mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~  195 (215)
T PF02309_consen  116 MDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVK  195 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHH
Confidence            89999999999999999999999999999   544          1111 256799999999999999999999999999


Q ss_pred             ccceeEEeeCCccc
Q 042047           67 SVQRLEILRCGAVE   80 (83)
Q Consensus        67 ~vkrl~I~~~~~~~   80 (83)
                      +||||+|++.+|+.
T Consensus       196 ~vkRl~I~~~~e~~  209 (215)
T PF02309_consen  196 SVKRLRIMKSSEAK  209 (215)
T ss_dssp             --------------
T ss_pred             HhhccEEecHHHhc
Confidence            99999999999875

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.75  E-value=9.3e-05  Score=45.13  Aligned_cols=56  Identities=27%  Similarity=0.418  Sum_probs=47.3

Q ss_pred             eeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhccc
Q 042047            8 RKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESVQ   69 (83)
Q Consensus         8 RkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~vk   69 (83)
                      |.+.+..--+|++|...++..|+..      ...+.+.|.|.||||..+-. .=|++.+..++
T Consensus        14 ~~~~~~~~~s~~~L~~~i~~~~~~~------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~   70 (84)
T PF00564_consen   14 RIISLPSDVSFDDLRSKIREKFGLL------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK   70 (84)
T ss_dssp             EEEEECSTSHHHHHHHHHHHHHTTS------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCC------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence            3478888889999999999999986      36899999999999998874 45777777765

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.56  E-value=0.00049  Score=41.88  Aligned_cols=56  Identities=27%  Similarity=0.407  Sum_probs=45.5

Q ss_pred             eeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhccc
Q 042047            8 RKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESVQ   69 (83)
Q Consensus         8 RkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~vk   69 (83)
                      |.+-+..--+|++|.+++.+.|+...      ..+.+.|+|.|||+..+.+ .=|++-+..++
T Consensus        13 ~~~~~~~~~s~~dL~~~i~~~~~~~~------~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~   69 (81)
T smart00666       13 RRLSVPRDISFEDLRSKVAKRFGLDN------QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD   69 (81)
T ss_pred             EEEEECCCCCHHHHHHHHHHHhCCCC------CCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence            66777778899999999999999632      5789999999999987765 56777666655

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.52  E-value=0.00041  Score=41.97  Aligned_cols=55  Identities=24%  Similarity=0.382  Sum_probs=44.6

Q ss_pred             eeccC-CCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhccc
Q 042047            9 KINLS-LYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESVQ   69 (83)
Q Consensus         9 kiDL~-~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~vk   69 (83)
                      .+-+. ..-+|++|...|.+.|+...      ..+.+.|.|.|||+..+.+ .=|++-++.++
T Consensus        13 ~~~~~~~~~s~~~L~~~i~~~~~~~~------~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~   69 (81)
T cd05992          13 RFVVVSRSISFEDLRSKIAEKFGLDA------VSFKLKYPDEDGDLVTISSDEDLEEAIEEAR   69 (81)
T ss_pred             EEEEecCCCCHHHHHHHHHHHhCCCC------CcEEEEeeCCCCCEEEeCCHHHHHHHHHHHh
Confidence            33444 77899999999999999743      5889999999999999887 56777766655

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=97.22  E-value=0.00098  Score=43.02  Aligned_cols=50  Identities=22%  Similarity=0.267  Sum_probs=39.2

Q ss_pred             ceeeeecc--CCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047            5 GIARKINL--SLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG   57 (83)
Q Consensus         5 ~igRkiDL--~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG   57 (83)
                      |-||.+=+  ....|+.+|..+..+-|++....   ...+.|.|.|.||||.++-
T Consensus         8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~---~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           8 PKGRVHRFRLRPSESLEELRTLISQRLGDDDFE---THLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCEEEEEecCCCCHHHHHHHHHHHhCCcccc---CCcccEEEEcCCCCEEEEe
Confidence            34555444  44789999999999999886532   4789999999999998864

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.21  E-value=0.0012  Score=41.85  Aligned_cols=44  Identities=18%  Similarity=0.404  Sum_probs=35.9

Q ss_pred             eeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047            9 KINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG   57 (83)
Q Consensus         9 kiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG   57 (83)
                      .+-|..--+|++|.+++.+.|.+..     ...+.|-|.|.||||..+-
T Consensus        13 r~~l~~~~~~~~L~~~i~~r~~~~~-----~~~f~LkY~Ddegd~v~lt   56 (82)
T cd06407          13 RFRLPPSWGFTELKQEIAKRFKLDD-----MSAFDLKYLDDDEEWVLLT   56 (82)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhCCCC-----CCeeEEEEECCCCCeEEee
Confidence            4455555699999999999999742     2689999999999998763

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=97.14  E-value=0.0033  Score=40.35  Aligned_cols=56  Identities=14%  Similarity=0.284  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecCC---ChhHHhhccceeEEee
Q 042047           17 SFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDV---PWQTFIESVQRLEILR   75 (83)
Q Consensus        17 sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD~---PW~~F~~~vkrl~I~~   75 (83)
                      +|.+|...+.+.|...-   .....+.+.|.|.|||+.-+.+-   -|..=+...++|+|..
T Consensus        22 t~~~L~~~v~~~F~~~~---~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~~~~l~~~~   80 (81)
T cd06401          22 TYDELLLMMQRVFRGKL---GSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSRILKLTLFV   80 (81)
T ss_pred             cHHHHHHHHHHHhcccc---CCcccEEEEEECCCCCEEEeccHHHHHHHHhcCcceEEEEec
Confidence            99999999999998432   23479999999999999999864   5665566667777653

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=96.82  E-value=0.004  Score=40.22  Aligned_cols=49  Identities=20%  Similarity=0.333  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecCCChhHHhhccce
Q 042047           15 YNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESVQR   70 (83)
Q Consensus        15 ~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD~PW~~F~~~vkr   70 (83)
                      --+|++|.+++++.|.+..     ..++.+.|.|.+|||..+-.  =+++..++.+
T Consensus        24 d~~~~~L~~kI~~~f~l~~-----~~~~~l~Y~Dedgd~V~l~~--D~DL~~a~~~   72 (91)
T cd06398          24 DLNMDGLREKVEELFSLSP-----DADLSLTYTDEDGDVVTLVD--DNDLTDAIQY   72 (91)
T ss_pred             CCCHHHHHHHHHHHhCCCC-----CCcEEEEEECCCCCEEEEcc--HHHHHHHHHH
Confidence            5799999999999998733     37999999999999998853  3444444443

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.79  E-value=0.0044  Score=39.75  Aligned_cols=56  Identities=21%  Similarity=0.315  Sum_probs=43.0

Q ss_pred             eeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec-CCChhHHhhccce
Q 042047            9 KINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG-DVPWQTFIESVQR   70 (83)
Q Consensus         9 kiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG-D~PW~~F~~~vkr   70 (83)
                      .+|.+...+|+++++-|+.+|.+..      ..+.|.|.|.+||.+-+- |+-+..=+++++.
T Consensus        15 sl~r~~~~~f~ef~~ll~~lH~l~~------~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~p   71 (80)
T cd06403          15 SLDRNKPGKFEDFYKLLEHLHHIPN------VDFLIGYTDPHGDLLPINNDDNFLKALSSANP   71 (80)
T ss_pred             EeccccCcCHHHHHHHHHHHhCCCC------CcEEEEEeCCCCCEecccCcHHHHHHHHcCCC
Confidence            4566677999999999999999854      689999999999999774 3444444445443

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.79  E-value=0.0052  Score=39.33  Aligned_cols=41  Identities=12%  Similarity=0.174  Sum_probs=34.5

Q ss_pred             eeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047            9 KINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG   57 (83)
Q Consensus         9 kiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG   57 (83)
                      +++.+..-+|++|.+++.++|++.        .+.|.|.|.||||.++-
T Consensus        15 ~~~~~~~~~~~~L~~ev~~rf~l~--------~f~lKYlDde~e~v~ls   55 (81)
T cd06396          15 LVSDSENTTWASVEAMVKVSFGLN--------DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EecCCCCCCHHHHHHHHHHHhCCC--------cceeEEEcCCCCEEEEE
Confidence            344444679999999999999984        78999999999998763

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=96.08  E-value=0.021  Score=36.79  Aligned_cols=58  Identities=22%  Similarity=0.343  Sum_probs=45.1

Q ss_pred             eeeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhccce
Q 042047            7 ARKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESVQR   70 (83)
Q Consensus         7 gRkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~vkr   70 (83)
                      -|++.-..-=+|.+|.++|+.+|.+...      .+.|+|.|.+||..-+-+ .--++|.+-..+
T Consensus        11 ~RRf~~~~~pt~~~L~~kl~~Lf~lp~~------~~~vtYiDeD~D~ITlssd~eL~d~~~~~~~   69 (82)
T cd06397          11 TRRIVFPDIPTWEALASKLENLYNLPEI------KVGVTYIDNDNDEITLSSNKELQDFYRLSHR   69 (82)
T ss_pred             eEEEecCCCccHHHHHHHHHHHhCCChh------HeEEEEEcCCCCEEEecchHHHHHHHHhccc
Confidence            4777777788999999999999998542      389999999999876554 466666654444

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=96.03  E-value=0.023  Score=36.72  Aligned_cols=44  Identities=25%  Similarity=0.515  Sum_probs=35.4

Q ss_pred             eccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC
Q 042047           10 INLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD   58 (83)
Q Consensus        10 iDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD   58 (83)
                      +|=....+|++|...+.++|....     ...+++.|.|.|||..-+..
T Consensus        21 l~~~~~~s~~~L~~~V~~~f~~l~-----~~~ftlky~DeeGDlvtIss   64 (87)
T cd06402          21 IDEDVSTSYEYLVEKVAAVFPSLR-----GKNFQLFWKDEEGDLVAFSS   64 (87)
T ss_pred             ecCCCCcCHHHHHHHHHHHccccC-----CCcEEEEEECCCCCEEeecC
Confidence            344666799999999999996432     36899999999999987754

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.78  E-value=0.027  Score=36.29  Aligned_cols=41  Identities=27%  Similarity=0.297  Sum_probs=34.1

Q ss_pred             cCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047           12 LSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG   57 (83)
Q Consensus        12 L~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG   57 (83)
                      +...-+|++|.+++.+||....     ...+++.|.|.|||.--+.
T Consensus        16 ~d~~~s~e~L~~~v~~~c~~~~-----~q~ft~kw~DEEGDp~tiS   56 (83)
T cd06404          16 IDPSISLEELCNEVRDMCRFHN-----DQPFTLKWIDEEGDPCTIS   56 (83)
T ss_pred             cCCCcCHHHHHHHHHHHhCCCC-----CCcEEEEEECCCCCceeec
Confidence            3446789999999999999743     3689999999999987664

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=92.46  E-value=0.33  Score=31.33  Aligned_cols=43  Identities=23%  Similarity=0.409  Sum_probs=35.8

Q ss_pred             eeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC
Q 042047            8 RKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD   58 (83)
Q Consensus         8 RkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD   58 (83)
                      |.|-+..-=+|++|...+.++|++.       ..++|-|.|. ||..-+++
T Consensus        14 ~~i~v~~~i~f~dL~~kIrdkf~~~-------~~~~iKykDE-GD~iti~s   56 (86)
T cd06408          14 RYIMIGPDTGFADFEDKIRDKFGFK-------RRLKIKMKDD-GDMITMGD   56 (86)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCC-------CceEEEEEcC-CCCccccC
Confidence            4455566668999999999999983       4789999999 99988876

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=91.24  E-value=0.46  Score=31.17  Aligned_cols=39  Identities=26%  Similarity=0.294  Sum_probs=32.3

Q ss_pred             eccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEe
Q 042047           10 INLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIA   56 (83)
Q Consensus        10 iDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlv   56 (83)
                      =||+..-+|.+|.....+-|..        .+..+-|+|.|||..-+
T Consensus        22 e~l~~~P~~kdLl~lmr~~f~~--------~dIaLNYrD~EGDLIRl   60 (92)
T cd06399          22 EDLSSTPLLKDLLELTRREFQR--------EDIALNYRDAEGDLIRL   60 (92)
T ss_pred             cccccCccHHHHHHHHHHHhch--------hheeeeeecCCCCEEEE
Confidence            3788889999999998888875        35689999999998644

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.79
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.0
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	95.56
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.47
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.16
1pqs_A	77	Cell division control protein 24; alpha and beta p	94.41
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	92.97
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	91.43
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	89.72
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	81.25

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.79  E-value=0.0024  Score=40.37  Aligned_cols=54  Identities=19%  Similarity=0.245  Sum_probs=40.5

Q ss_pred             eccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecCC-ChhHHhhccc
Q 042047           10 INLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDV-PWQTFIESVQ   69 (83)
Q Consensus        10 iDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD~-PW~~F~~~vk   69 (83)
                      +|-+...+|++|+..++++|.+      ....+.+.|.|.+||++-+-.. =..+=+.++|
T Consensus        22 ~d~~~~~~fe~f~~lv~~lh~L------~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~   76 (86)
T 1wmh_B           22 LPRASVSGFQEFSRLLRAVHQI------PGLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   76 (86)
T ss_dssp             EEGGGCCCHHHHHHHHHHHTTC------TTCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             ccCCCCCCHHHHHHHHHHHcCC------CCCCEEEEEECCCCCEeeecCHHHHHHHHHhCC
Confidence            4555678999999999999985      2368999999999999987543 3333334444

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.00  E-value=0.011  Score=37.33  Aligned_cols=44  Identities=25%  Similarity=0.277  Sum_probs=34.6

Q ss_pred             eeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec
Q 042047            9 KINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG   57 (83)
Q Consensus         9 kiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG   57 (83)
                      .+.+..--+|++|..++.++|....     ...+++.|.|.|||+.-+-
T Consensus        19 ~~~v~~~i~~~~L~~kv~~~~~~~~-----~~~f~lky~DEeGD~itis   62 (89)
T 1vd2_A           19 ITHFEPSISFEGLCNEVRDMCSFDN-----EQLFTMKWIDEEGDPCTVS   62 (89)
T ss_dssp             EEEECTTCCHHHHHHHHHHHTTCCS-----SCCEEEEECCSSSCCEECC
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCCC-----CCeEEEEEECCCCCccccc
Confidence            3444445699999999999999742     3579999999999987653

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=95.56  E-value=0.026  Score=36.34  Aligned_cols=60  Identities=17%  Similarity=0.329  Sum_probs=46.5

Q ss_pred             eeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhcc
Q 042047            8 RKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESV   68 (83)
Q Consensus         8 RkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~v   68 (83)
                      |.|=...-=+|++|..++.+-|..+... +.+...++-|+|.|||+..+++ .=|++=+.++
T Consensus        25 ~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~~   85 (98)
T 1q1o_A           25 FTLLVEKVWNFDDLIMAINSKISNTHNN-NISPITKIKYQDEDGDFVVLGSDEDWNVAKEML   85 (98)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHHHHCSS-CCCCCCCEEEECSSSCEEEECSHHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHHHHcCCccc-cccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence            5566667778999999999999987221 1135689999999999988876 5788777765

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.47  E-value=0.022  Score=36.73  Aligned_cols=39  Identities=15%  Similarity=0.290  Sum_probs=32.3

Q ss_pred             CCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecCC
Q 042047           16 NSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDV   59 (83)
Q Consensus        16 ~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD~   59 (83)
                      .+|++|...+.++|..-.     +..|.+.|.|.|||..-+...
T Consensus        42 ~s~~~L~~~V~~lFp~l~-----~~~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           42 GPCERLLSRVAVLFPALR-----PGGFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             CHHHHHHHHHHHHCTTSC-----SSCEEEEEECTTCCEEEECSH
T ss_pred             ccHHHHHHHHHHHccccC-----CCcEEEEEECCCCCEEEecCH
Confidence            589999999999997322     357999999999999887653

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.16  E-value=0.033  Score=36.85  Aligned_cols=39  Identities=18%  Similarity=0.298  Sum_probs=32.2

Q ss_pred             CCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC
Q 042047           15 YNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD   58 (83)
Q Consensus        15 ~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD   58 (83)
                      -.+|++|...+.++|..-     .+..|++.|.|.|||+.-+..
T Consensus        56 ~~s~~~L~~kV~~lFp~L-----~~~~f~l~YkDEdGDlItISs   94 (117)
T 2ktr_A           56 PGPSERLLSRVAVLFPAL-----RPGGFQAHYRAERGDLVAFSS   94 (117)
T ss_dssp             CCHHHHHHHHHHHHCTTS-----CSSCEEEEEECTTCCEEEECS
T ss_pred             CCCHHHHHHHHHHHcccc-----CCCcEEEEEECCCCCEEEecC
Confidence            469999999999999632     235799999999999987765

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=94.41  E-value=0.055  Score=33.17  Aligned_cols=60  Identities=17%  Similarity=0.326  Sum_probs=44.9

Q ss_pred             eeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC-CChhHHhhcc
Q 042047            8 RKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD-VPWQTFIESV   68 (83)
Q Consensus         8 RkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD-~PW~~F~~~v   68 (83)
                      +.|=...-=+|++|...+.+-|... ...+.+...++-|+|.|||+...++ .=|++=+.++
T Consensus         4 ~~i~V~~~i~f~~L~~kI~~kl~~~-~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~   64 (77)
T 1pqs_A            4 FTLLVEKVWNFDDLIMAINSKISNT-HNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML   64 (77)
T ss_dssp             EEEECTTCCCSHHHHHHHHHHTTTT-TSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHccc-ccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence            3444556668999999999999975 2212246789999999999987776 5788777765

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=92.97  E-value=0.21  Score=32.66  Aligned_cols=40  Identities=25%  Similarity=0.268  Sum_probs=34.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC
Q 042047           11 NLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD   58 (83)
Q Consensus        11 DL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD   58 (83)
                      ||+..-+|.+|..-..+-|..        .+..|-|+|.|||+.-+=|
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~--------~DIaLNYrD~eGDLIrild   67 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQR--------EDIALNYRDAEGDLVRLLS   67 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCC--------SSEEEEEECTTSCEEECCS
T ss_pred             ccccCCCHHHHHHHHHHHhcc--------cceeeeeecCCCCEEEEcc
Confidence            678888999999999999983        5779999999999986644

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=91.43  E-value=0.42  Score=30.13  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             CCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEe
Q 042047           15 YNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIA   56 (83)
Q Consensus        15 ~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlv   56 (83)
                      --++++|...+...|++        +.++|.|.|.|||-.-|
T Consensus        27 ~~tweel~~mvk~~f~L--------~~~~ikY~DEenD~v~i   60 (87)
T 2bkf_A           27 NTTWADIEAMVKVSFDL--------NTIQIKYLDEENEEVSI   60 (87)
T ss_dssp             GCCHHHHHHHHHHHHTC--------SSEEEEEECTTSCEEEE
T ss_pred             CCCHHHHHHHHHHHcCC--------CceEEEEEcCCCCEEEE
Confidence            67899999999999998        46799999999998876

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=89.72  E-value=0.37  Score=31.16  Aligned_cols=45  Identities=11%  Similarity=0.158  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecCCChhHHhhcc
Q 042047           14 LYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGDVPWQTFIESV   68 (83)
Q Consensus        14 ~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD~PW~~F~~~v   68 (83)
                      .--++++|...+...|++        +.++|.|.|.|||-.-|  ..+.+|-..+
T Consensus        34 ~~~tweel~~mvk~~f~L--------~~~~IkY~DEenD~V~i--~Sq~E~eEAl   78 (101)
T 1wj6_A           34 ENTTWADIEAMVKVSFDL--------NTIQIKYLDEENEEVSI--NSQGEYEEAL   78 (101)
T ss_dssp             TTSCHHHHHHHHHHHHCC--------SSBCCEEECTTSCEECC--CSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCC--------CceEEEEecCCCCEEEE--ecHHHHHHHH
Confidence            367899999999999998        36799999999999888  4566665543

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=81.25  E-value=2.9  Score=25.78  Aligned_cols=58  Identities=5%  Similarity=0.038  Sum_probs=43.4

Q ss_pred             eccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEc-CCCCeEEecCCChhHHhhc--cceeEE
Q 042047           10 INLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQD-KEGDWLIAGDVPWQTFIES--VQRLEI   73 (83)
Q Consensus        10 iDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D-~eGD~mlvGD~PW~~F~~~--vkrl~I   73 (83)
                      |....=-+|.+|...|.+-+....      ..-+|-|.| .+|.+.+.+|.-++.=...  --||++
T Consensus        18 irvp~~~~y~~L~~~l~~kL~l~~------~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL   78 (83)
T 1oey_A           18 MKTQPGLPYSQVRDMVSKKLELRL------EHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL   78 (83)
T ss_dssp             EEECTTCCHHHHHHHHHHHTTCCG------GGCCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHhCCCc------ceeEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence            444455689999999999988753      345899999 6788889999998877666  334544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.77
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.99
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	94.19
d1pqsa_	77	Cell division control protein 24, CDC24, C-termina	91.63
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	91.18
d1e8qa_	46	Cellulose docking domain, dockering {Piromyces equ	80.78

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0014  Score=39.88  Aligned_cols=50  Identities=8%  Similarity=0.147  Sum_probs=38.3

Q ss_pred             eeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec-CCChhHHhh
Q 042047            9 KINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG-DVPWQTFIE   66 (83)
Q Consensus         9 kiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG-D~PW~~F~~   66 (83)
                      +|-.+.-.+|.+|...++..|+++        .+.|.|.|.||||.++. |.=-++...
T Consensus        19 ~ls~~~~~~~~~L~~~i~~rf~l~--------~~~lkY~Ddd~e~v~l~~d~dl~E~~~   69 (85)
T d2bkfa1          19 LVSDPENTTWADIEAMVKVSFDLN--------TIQIKYLDEENEEVSINSQGEYEEALK   69 (85)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTCS--------SEEEEEECTTSCEEEECSHHHHHHHHH
T ss_pred             EecCCCCCcHHHHHHHHHHhcCcc--------cceEEEEcCCCCEEEEecHHHHHHHHH
Confidence            344556688999999999999872        47999999999998775 344454444

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0052  Score=36.48  Aligned_cols=58  Identities=12%  Similarity=0.123  Sum_probs=42.4

Q ss_pred             eeeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEec-CCChhHHhhccceeEE
Q 042047            8 RKINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAG-DVPWQTFIESVQRLEI   73 (83)
Q Consensus         8 RkiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvG-D~PW~~F~~~vkrl~I   73 (83)
                      |.+-|..--+|.+|..++.+.|..        ..++|-|+|.||||..+- |.=+++=+....||.+
T Consensus        24 ~~~~l~~~it~~dL~~kI~~rf~~--------~~~~lkY~Dedgd~v~i~sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          24 FALMLKGDTTYKELRSKIAPRIDT--------DNFKLQTKLFDGSGEEIKTDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             EEEEECSCCCHHHHHHHHHHHHTS--------SCEEEEECCSSSCCSCCCSHHHHHHHHHTTCCEEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHhCC--------CceEEEEEcCCCCEEEEeCHHHHHHHHHhcCcEEE
Confidence            344555667899999999999964        358999999999997554 4456665555555544

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.048  Score=32.71  Aligned_cols=44  Identities=20%  Similarity=0.303  Sum_probs=37.7

Q ss_pred             eeccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEecC
Q 042047            9 KINLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIAGD   58 (83)
Q Consensus         9 kiDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlvGD   58 (83)
                      .+|.+..++|++.+.-|+++=.+.      +..+.|.|.|..||.+-+-.
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l~------~~~f~i~Y~D~hgDLLPINN   60 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQIP------GLDVLLGYTDAHGDLLPLTN   60 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTCT------TCCCEEEEECTTSCEEECCS
T ss_pred             eeccccccCHHHHHHHHHHHcCCC------CCcEEEEEecCCCCcccccC
Confidence            467788999999999999998773      36899999999999998753

>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Cell division control protein 24, CDC24, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.63  E-value=0.059  Score=31.95  Aligned_cols=55  Identities=18%  Similarity=0.355  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEe-cCCChhHHhhcc
Q 042047           13 SLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIA-GDVPWQTFIESV   68 (83)
Q Consensus        13 ~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlv-GD~PW~~F~~~v   68 (83)
                      +.--+|++|++++.+--..++..... ..-++-|+|.|||-..+ .|.-|++=..+.
T Consensus         9 ~~~i~f~~L~~kI~~Kia~~~~~~~~-~~~rlrY~DeDGD~V~i~sddd~~~a~~~~   64 (77)
T d1pqsa_           9 EKVWNFDDLIMAINSKISNTHNNNIS-PITKIKYQDEDGDFVVLGSDEDWNVAKEML   64 (77)
T ss_dssp             TTCCCSHHHHHHHHHHTTTTTSSCSC-STTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred             EcCcCHHHHHHHHHHHHHhccCCCCC-ccceEEEEcCCCCEEEEeccchHHHHHHHH
Confidence            34458999999998876655543222 34499999999997554 567888755544

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.18  E-value=0.22  Score=30.91  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             eccCCCCCHHHHHHHHHHHHhhhhhcccCCCceEEEEEcCCCCeEEe
Q 042047           10 INLSLYNSFETLANSLIHMFATYQKSEKRGVRYTLTYQDKEGDWLIA   56 (83)
Q Consensus        10 iDL~~~~sY~~L~~~L~~MF~~~~~~~~~~~~~~l~Y~D~eGD~mlv   56 (83)
                      =||+.--+|.+|..-..+-|..        .+..|-|.|.|||..-+
T Consensus        25 edl~~~P~ykdLl~lmr~~f~~--------~dIaLNYrD~eGDLIRl   63 (105)
T d1oeyj_          25 EDLSSTPLLKDLLELTRREFQR--------EDIALNYRDAEGDLVRL   63 (105)
T ss_dssp             SCTTCCCCHHHHHHHHHHHHCC--------SSEEEEEECTTSCEEEC
T ss_pred             cccccCccHHHHHHHHHHHhcc--------ceeEeeeecCCCCEEEE
Confidence            3788889999999999998875        56799999999998754

>d1e8qa_ g.55.1.1 (A:) Cellulose docking domain, dockering {Piromyces equi [TaxId: 99929]}

class: Small proteins
fold: Cellulose docking domain, dockering
superfamily: Cellulose docking domain, dockering
family: Cellulose docking domain, dockering
domain: Cellulose docking domain, dockering
species: Piromyces equi [TaxId: 99929]

Probab=80.78  E-value=0.23  Score=26.64  Aligned_cols=16  Identities=25%  Similarity=0.655  Sum_probs=12.7

Q ss_pred             CceEEEEEcCCCCeEE
Q 042047           40 VRYTLTYQDKEGDWLI   55 (83)
Q Consensus        40 ~~~~l~Y~D~eGD~ml   55 (83)
                      +.-.|+|+|.+|+|=.
T Consensus        17 ~~~~V~ytD~dG~WGV   32 (46)
T d1e8qa_          17 SSTKVEYTDASGQWGV   32 (46)
T ss_dssp             GGSCEEEEETTEEEEE
T ss_pred             CCCeEEEecCCCcccc
Confidence            3457999999999843