Citrus Sinensis ID: 042065

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MVEICGSTTLIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccEccccccccccccEEEEEcccccccccccHcHcccccccEEEcccccccccccHHHHHHcHHccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEccccc
Coil and Loop (DISEMBL)
MVEICGSTTLIIEtcgglrygtkedIACLKSIKDSledpfnylnsswnfnndtegfickftgvecwhpdenkVLNLRLTdmglkgqfprgirncssmtgldlssnklygslpddISKLVGFLTgldlssnnfsgsiptnlancsylnslkldhnrfsgqippqlgqlgrlksfSVANNL
Flexible Loop (DISEMBL)
mveicgsttliietcgglrygtKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIppqlgqlgrlksfsvannl
Low Complexity Region (SEG)
MVEICGSTTLIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL
Disordered region (IsUnstruct)
***ICGSTTLIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRF***********************
Disordered Region (DISOPRED)
MVEICGSTTLIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL
Disordered Region (DISEMBL)
MVEICGSTTLIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL
Disordered Region (DISPRO)
MVEICGSTTLIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVEICGSTTLIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9ASS4	620	Probably inactive leucine	yes	no	0.865	0.25	0.532	8e-46
C0LGI5	591	Probable LRR receptor-lik	no	no	0.865	0.262	0.452	4e-34
O04567	601	Probable inactive recepto	no	no	0.787	0.234	0.450	1e-30
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.597	0.099	0.462	4e-17
Q9SGP2	996	Receptor-like protein kin	no	no	0.854	0.153	0.333	5e-15
Q9LHP4	1141	Receptor-like protein kin	no	no	0.592	0.092	0.457	8e-15
C0LGU1	959	Probable LRR receptor-lik	no	no	0.826	0.154	0.348	1e-13
Q42371	976	LRR receptor-like serine/	no	no	0.849	0.155	0.343	1e-13
Q9LT96	946	Probable leucine-rich rep	no	no	0.804	0.152	0.348	3e-13
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.569	0.100	0.420	4e-13

>sp|Q9ASS4|Y5838_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1

 Score =  182 bits (463), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 1/156 (0%)

Query: 23  KEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMG 82
           + +I CL++ K  +EDP  YL S+W F N+T G+ICKF+GV CWH DEN+VL+++L+  G
Sbjct: 29  QANIDCLRTFKSQVEDPNRYL-STWVFGNETAGYICKFSGVTCWHDDENRVLSIKLSGYG 87

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
           L+G FP  ++ C+ +TGLDLS N   G LP +IS L+  +T LDLS N+FSG IP  ++N
Sbjct: 88  LRGVFPPAVKLCADLTGLDLSRNNFSGPLPANISTLIPLVTILDLSYNSFSGEIPMLISN 147

Query: 143 CSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            ++LN+L L HN+F+G +PPQL QLGRLK+FSV++N
Sbjct: 148 ITFLNTLMLQHNQFTGTLPPQLAQLGRLKTFSVSDN 183

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGI5|Y1699_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1

 Score =  144 bits (362), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 22  TKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDM 81
            ++D+ CLK  K SL+DP N LN+ W+F N +   ICK TGV CW+  EN++L+L+L  M
Sbjct: 18  AEDDVLCLKGFKSSLKDPSNQLNT-WSFPNSSSS-ICKLTGVSCWNAKENRILSLQLQSM 75

Query: 82  GLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLA 141
            L GQ P  ++ C S+  LDLS N   G +P  I   + +L  LDLS N  SGSIP+ + 
Sbjct: 76  QLSGQIPESLKLCRSLQSLDLSFNDFSGLIPSQICSWLPYLVTLDLSGNKLSGSIPSQIV 135

Query: 142 NCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +C +LNSL L+ N+ +G IP +L +L RL+  S+A+N
Sbjct: 136 DCKFLNSLALNQNKLTGSIPSELTRLNRLQRLSLADN 172

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O04567|Y1719_ARATH Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 90/142 (63%), Gaps = 1/142 (0%)

Query: 22  TKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDM 81
            ++D+ CL+ +K+SL DP + L SSW+F N +   ICK TGV CW+  EN++++L+L  M
Sbjct: 24  AEDDVLCLQGLKNSLIDPSSRL-SSWSFPNSSASSICKLTGVSCWNEKENRIISLQLQSM 82

Query: 82  GLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLA 141
            L G+ P  ++ C S+  LDLS N L GS+P  I   + +L  LDLS N   GSIPT + 
Sbjct: 83  QLAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIV 142

Query: 142 NCSYLNSLKLDHNRFSGQIPPQ 163
            C +LN+L L  N+ SG IP Q
Sbjct: 143 ECKFLNALILSDNKLSGSIPSQ 164

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 1/108 (0%)

Query: 71  NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130
            K+ +L L    L G  P  I NCSS+   D+S+N L G +P D+ KLV +L  L LS N
Sbjct: 284 QKITSLLLWGNSLSGVIPPEISNCSSLVVFDVSANDLTGDIPGDLGKLV-WLEQLQLSDN 342

Query: 131 NFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            F+G IP  L+NCS L +L+LD N+ SG IP Q+G L  L+SF +  N
Sbjct: 343 MFTGQIPWELSNCSSLIALQLDKNKLSGSIPSQIGNLKSLQSFFLWEN 390

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 30/183 (16%)

Query: 20  YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLT 79
           +   +D   L+ +K SL+DP +YL SSWN N+ +    C+++GV C   D + V ++ L+
Sbjct: 14  FSLNQDGFILQQVKLSLDDPDSYL-SSWNSNDASP---CRWSGVSC-AGDFSSVTSVDLS 68

Query: 80  DMGLKGQFPR------------------------GIRNCSSMTGLDLSSNKLYGSLPDDI 115
              L G FP                          I  C S+  LDLS N L G LP  +
Sbjct: 69  SANLAGPFPSVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTL 128

Query: 116 SKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSV 175
           +  +  L  LDL+ NNFSG IP +      L  L L +N   G IPP LG +  LK  ++
Sbjct: 129 AD-IPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNL 187

Query: 176 ANN 178
           + N
Sbjct: 188 SYN 190

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 1/107 (0%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
           K+  L L    L G  P  I NCS++  +DLS N L GS+P  I +L  FL    +S N 
Sbjct: 299 KLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRL-SFLEEFMISDNK 357

Query: 132 FSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           FSGSIPT ++NCS L  L+LD N+ SG IP +LG L +L  F   +N
Sbjct: 358 FSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSN 404

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGU1|Y5374_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 10/158 (6%)

Query: 25  DIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDEN----KVLNLRLTD 80
           D++ L+ +   L+DP N+L   W     T+     +TGV C  PD +     V  LRL +
Sbjct: 32  DVSALQYVHRKLKDPLNHLQD-WK---KTDPCASNWTGVICI-PDPSDGFLHVKELRLLN 86

Query: 81  MGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL 140
           M L GQ    +   S++T L+   N L G +P ++  L   L  L LS N  +GS+P  L
Sbjct: 87  MNLTGQLAPELGLLSNLTILNFMWNDLTGQIPPELGNLT-HLIFLLLSGNQLTGSLPQEL 145

Query: 141 ANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            + S L  L++D+N  SG++P  L  L +LK F + NN
Sbjct: 146 GSLSNLLILQIDYNEISGKLPTSLANLKKLKHFHMNNN 183

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 22  TKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDM 81
           T E+ A L  IK S +D  N L   +++        C + GV C +   N V+ L L+D+
Sbjct: 23  TSEEGATLLEIKKSFKDVNNVL---YDWTTSPSSDYCVWRGVSCENVTFN-VVALNLSDL 78

Query: 82  GLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLA 141
            L G+    I +  S+  +DL  N+L G +PD+I      L  LDLS N  SG IP +++
Sbjct: 79  NLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGD-CSSLQNLDLSFNELSGDIPFSIS 137

Query: 142 NCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
               L  L L +N+  G IP  L Q+  LK   +A N
Sbjct: 138 KLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQN 174

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LT96|Y5977_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 88/155 (56%), Gaps = 11/155 (7%)

Query: 25  DIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLK 84
           D   L+++K+     ++ L+ SW  ++D  G   ++ G+ C   ++N+V+++ LT+  LK
Sbjct: 31  DFTALQALKNE----WDTLSKSWK-SSDPCG--TEWVGITC--NNDNRVVSISLTNRNLK 81

Query: 85  GQFPRGIRNCSSMTGLDLSSN-KLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANC 143
           G+ P  I   S +  LDL+ N +L G LP +I  L   LT L L    F+G IP ++ N 
Sbjct: 82  GKLPTEISTLSELQTLDLTGNPELSGPLPANIGNLRK-LTFLSLMGCAFNGPIPDSIGNL 140

Query: 144 SYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             L  L L+ N+FSG IP  +G+L +L  F +A+N
Sbjct: 141 EQLTRLSLNLNKFSGTIPASMGRLSKLYWFDIADN 175

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 76  LRLTDMG---LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNF 132
           L   DMG   L+G  P G+ NCS +  L L SN+L GS+P ++  L   L  L+L  NN 
Sbjct: 116 LEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTN-LVQLNLYGNNM 174

Query: 133 SGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFS-VANN 178
            G +PT+L N + L  L L HN   G+IP  + QL ++ S   VANN
Sbjct: 175 RGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANN 221

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
255572714	302	ATP binding protein, putative [Ricinus c	0.893	0.529	0.743	3e-66
351724489	572	protein kinase precursor [Glycine max] g	0.910	0.284	0.705	2e-65
359495880	621	PREDICTED: probably inactive leucine-ric	0.893	0.257	0.737	3e-65
296083399	625	unnamed protein product [Vitis vinifera]	0.893	0.256	0.737	4e-65
359497728	625	PREDICTED: probably inactive leucine-ric	0.921	0.264	0.690	8e-65
296083571	619	unnamed protein product [Vitis vinifera]	0.921	0.266	0.690	8e-65
147766948	619	hypothetical protein VITISV_037939 [Viti	0.893	0.258	0.7	7e-64
255577869	598	serine-threonine protein kinase, plant-t	0.888	0.265	0.729	9e-64
357507899	615	Probably inactive leucine-rich repeat re	0.972	0.282	0.647	1e-61
358248884	592	probably inactive leucine-rich repeat re	0.882	0.266	0.691	4e-60

>gi|255572714|ref|XP_002527290.1| ATP binding protein, putative [Ricinus communis] gi|223533383|gb|EEF35134.1| ATP binding protein, putative [Ricinus communis]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/160 (74%), Positives = 139/160 (86%)

Query: 20  YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLT 79
           Y T+ DIACLKSIK SLEDP N LNSSW+FNN TEG+ICKF GVECWHPDENKVLNLRL+
Sbjct: 32  YATETDIACLKSIKASLEDPLNNLNSSWDFNNKTEGYICKFVGVECWHPDENKVLNLRLS 91

Query: 80  DMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN 139
            MGLKG+FP G++NC+S+TG+DLSSN+L GS+P DIS ++ ++T L+LSSNNFSG IP  
Sbjct: 92  GMGLKGRFPIGLQNCTSITGVDLSSNELSGSIPADISHIIKYVTSLELSSNNFSGEIPVA 151

Query: 140 LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           LANCSYLN LKLDHNR +GQIPPQLG L R+K+FSVANNL
Sbjct: 152 LANCSYLNVLKLDHNRLTGQIPPQLGLLARIKTFSVANNL 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724489|ref|NP_001238083.1| protein kinase precursor [Glycine max] gi|212717145|gb|ACJ37414.1| protein kinase [Glycine max]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/163 (70%), Positives = 140/163 (85%)

Query: 17  GLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNL 76
           G+ YGT  DI CLKSIK+SLEDP+NYL  SW+FNN TEG+IC+F GVECWHPDEN+VLNL
Sbjct: 23  GITYGTDTDIFCLKSIKESLEDPYNYLKFSWDFNNKTEGYICRFNGVECWHPDENRVLNL 82

Query: 77  RLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSI 136
           +L++MGLKGQFPRGI+NCSS+TGLDLS NKL G++P DIS L+ F T +DLS+N FSG+I
Sbjct: 83  KLSNMGLKGQFPRGIQNCSSLTGLDLSINKLSGTIPGDISTLIPFATSIDLSTNEFSGAI 142

Query: 137 PTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           P +LANC++LN+LKLD NR +GQIPPQ G L R+K FSV+NNL
Sbjct: 143 PVSLANCTFLNTLKLDQNRLTGQIPPQFGVLSRIKVFSVSNNL 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495880|ref|XP_002267164.2| PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like [Vitis vinifera]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/160 (73%), Positives = 142/160 (88%)

Query: 20  YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLT 79
           Y T+ DI CLK+IK+SL+DP NYLN SWNFNN+TEGFICKF G++CWHPDEN+VLN+RL+
Sbjct: 28  YATETDIYCLKTIKNSLQDPNNYLNFSWNFNNNTEGFICKFAGIDCWHPDENRVLNIRLS 87

Query: 80  DMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN 139
           DMGLKGQFPRGIRNCSS+TGLDLS+NKL GS+P DIS+L+ F+T L+LSSN+F+G IP +
Sbjct: 88  DMGLKGQFPRGIRNCSSLTGLDLSNNKLSGSIPSDISELLKFVTTLELSSNSFAGDIPPS 147

Query: 140 LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           LANCS+LN LKLD+NR +G IP QL QL RLK+FSVANNL
Sbjct: 148 LANCSFLNVLKLDNNRLTGTIPLQLSQLNRLKTFSVANNL 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083399|emb|CBI23354.3| unnamed protein product [Vitis vinifera]

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/160 (73%), Positives = 142/160 (88%)

Query: 20  YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLT 79
           Y T+ DI CLK+IK+SL+DP NYLN SWNFNN+TEGFICKF G++CWHPDEN+VLN+RL+
Sbjct: 28  YATETDIYCLKTIKNSLQDPNNYLNFSWNFNNNTEGFICKFAGIDCWHPDENRVLNIRLS 87

Query: 80  DMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN 139
           DMGLKGQFPRGIRNCSS+TGLDLS+NKL GS+P DIS+L+ F+T L+LSSN+F+G IP +
Sbjct: 88  DMGLKGQFPRGIRNCSSLTGLDLSNNKLSGSIPSDISELLKFVTTLELSSNSFAGDIPPS 147

Query: 140 LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           LANCS+LN LKLD+NR +G IP QL QL RLK+FSVANNL
Sbjct: 148 LANCSFLNVLKLDNNRLTGTIPLQLSQLNRLKTFSVANNL 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497728|ref|XP_003635622.1| PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like [Vitis vinifera]

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 114/165 (69%), Positives = 140/165 (84%)

Query: 15  CGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVL 74
           C  L Y T+ D+ CLK IK+SL+DP+ YLNSSW+FNN TEGFIC+FTG+ECWHPDEN+VL
Sbjct: 27  CSSLSYATESDLYCLKGIKNSLDDPYRYLNSSWDFNNKTEGFICRFTGIECWHPDENRVL 86

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           N++L DMGLKGQFPR I+NC+S+TGLDLSSN LYGS+P DI+ ++ F+T LDLSSNNFSG
Sbjct: 87  NIKLADMGLKGQFPRAIKNCTSLTGLDLSSNDLYGSIPSDINDIIKFMTTLDLSSNNFSG 146

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            IP  L+NCSYLN LKLD+N+ SG IP +LG L R+K+FSV+NNL
Sbjct: 147 PIPLGLSNCSYLNVLKLDNNQLSGTIPLELGLLNRMKTFSVSNNL 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083571|emb|CBI23562.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 114/165 (69%), Positives = 140/165 (84%)

Query: 15  CGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVL 74
           C  L Y T+ D+ CLK IK+SL+DP+ YLNSSW+FNN TEGFIC+FTG+ECWHPDEN+VL
Sbjct: 21  CSSLSYATESDLYCLKGIKNSLDDPYRYLNSSWDFNNKTEGFICRFTGIECWHPDENRVL 80

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           N++L DMGLKGQFPR I+NC+S+TGLDLSSN LYGS+P DI+ ++ F+T LDLSSNNFSG
Sbjct: 81  NIKLADMGLKGQFPRAIKNCTSLTGLDLSSNDLYGSIPSDINDIIKFMTTLDLSSNNFSG 140

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            IP  L+NCSYLN LKLD+N+ SG IP +LG L R+K+FSV+NNL
Sbjct: 141 PIPLGLSNCSYLNVLKLDNNQLSGTIPLELGLLNRMKTFSVSNNL 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766948|emb|CAN63265.1| hypothetical protein VITISV_037939 [Vitis vinifera]

 Score =  248 bits (633), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 112/160 (70%), Positives = 138/160 (86%)

Query: 20  YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLT 79
           Y T+ D+ CLK+IK SL+DP+ YLNSSW+FNN TEGFIC+FTG+ECWHPDEN+VLN++L 
Sbjct: 26  YATESDLYCLKAIKKSLDDPYRYLNSSWDFNNKTEGFICRFTGIECWHPDENRVLNIKLA 85

Query: 80  DMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN 139
           DMGLKGQFPR I+NC+S+TGLDLSSN LYGS+P DI+ ++ F+T LDLSSNNFSG IP  
Sbjct: 86  DMGLKGQFPRAIKNCTSLTGLDLSSNDLYGSIPSDINDIIKFMTTLDLSSNNFSGPIPLX 145

Query: 140 LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           L+NCSYLN LKLD+N+ SG IP +LG L R+K+FSV+NNL
Sbjct: 146 LSNCSYLNVLKLDNNQLSGTIPLELGLLNRMKTFSVSNNL 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577869|ref|XP_002529807.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530684|gb|EEF32556.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  248 bits (632), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 136/159 (85%)

Query: 21  GTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTD 80
           GT  DI CLKSIK SLEDPF+Y  SSW+F+N TEGFICKFTGVECWHPDENKVLNLR++ 
Sbjct: 28  GTATDIVCLKSIKHSLEDPFDYFKSSWDFSNYTEGFICKFTGVECWHPDENKVLNLRMSG 87

Query: 81  MGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL 140
           MGLKGQFP GI NC+S+TGLDLS+N+L G +P +ISKL+ ++T LDLSSNNFSG IPT++
Sbjct: 88  MGLKGQFPSGIENCTSLTGLDLSNNELQGPIPFNISKLLPYITSLDLSSNNFSGEIPTDI 147

Query: 141 ANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           ANCS+LN LKLDHNR + QIPP +G L R+K FSVANNL
Sbjct: 148 ANCSHLNVLKLDHNRLASQIPPAIGFLDRIKVFSVANNL 186

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507899|ref|XP_003624238.1| Probably inactive leucine-rich repeat receptor-like protein kinase [Medicago truncatula] gi|124361026|gb|ABN08998.1| Protein kinase [Medicago truncatula] gi|355499253|gb|AES80456.1| Probably inactive leucine-rich repeat receptor-like protein kinase [Medicago truncatula]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 146/176 (82%), Gaps = 2/176 (1%)

Query: 4   ICGSTTLIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGV 63
           I  S +L++ +CG + YGT+ DI CLK +K+SL+DP NYL + W+FNN TEG ICKFTGV
Sbjct: 12  IIVSFSLLVISCG-ITYGTETDILCLKRVKESLKDPNNYLQN-WDFNNKTEGSICKFTGV 69

Query: 64  ECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLT 123
           ECWHPDEN+VLNL+L++MGLKG+FPRGI+NCSS+TGLD S N L  S+P D+S L+GF+T
Sbjct: 70  ECWHPDENRVLNLKLSNMGLKGEFPRGIQNCSSLTGLDFSLNSLSKSIPADVSTLIGFVT 129

Query: 124 GLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            LDLSSN+F+G IP +LANC+YLNS+KLD N+ +GQIP + G L RLK+FSV+NNL
Sbjct: 130 TLDLSSNDFTGEIPVSLANCTYLNSIKLDQNQLTGQIPLEFGGLTRLKTFSVSNNL 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248884|ref|NP_001239701.1| probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like [Glycine max] gi|223452311|gb|ACM89483.1| leucine-rich repeat family protein [Glycine max]

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/159 (69%), Positives = 135/159 (84%), Gaps = 1/159 (0%)

Query: 21  GTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTD 80
           GT  DI CLKS+K +L+DP+NYL S WNFNN+TEG+ICKFTGVECWHPDENKVLNL+L++
Sbjct: 4   GTDSDIFCLKSVKRTLDDPYNYLQS-WNFNNNTEGYICKFTGVECWHPDENKVLNLKLSN 62

Query: 81  MGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL 140
           MGLKG FPRGI+NCSSMTGLD S N+L  ++P DIS L+ F+T LDLSSN+F+G IP +L
Sbjct: 63  MGLKGPFPRGIQNCSSMTGLDFSLNRLSKTIPADISTLLTFVTTLDLSSNDFTGEIPASL 122

Query: 141 ANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           +NC+YLN+++LD N+ +GQIP  L QL RLK FSVANNL
Sbjct: 123 SNCTYLNTIRLDQNQLTGQIPANLSQLPRLKLFSVANNL 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2165981	620	BIR1 "AT5G48380" [Arabidopsis	0.854	0.246	0.538	1.3e-43
TAIR|locus:2088937	605	AT3G28450 [Arabidopsis thalian	0.910	0.269	0.518	1.2e-42
TAIR|locus:2205834	601	AT1G27190 [Arabidopsis thalian	0.865	0.257	0.455	1.3e-34
TAIR|locus:2020558	591	AT1G69990 [Arabidopsis thalian	0.860	0.260	0.455	1.5e-34
TAIR|locus:2097305	274	RLP44 "AT3G49750" [Arabidopsis	0.921	0.602	0.415	3.9e-28
TAIR|locus:2156218	279	RLP57 "AT5G65830" [Arabidopsis	0.916	0.587	0.406	4e-26
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.592	0.112	0.445	1.1e-16
TAIR|locus:2032553	996	HSL1 "HAESA-like 1" [Arabidops	0.860	0.154	0.362	1.2e-16
TAIR|locus:2139320	395	AT4G03010 [Arabidopsis thalian	0.815	0.369	0.35	2.3e-16
TAIR|locus:2050877	691	AT2G45340 [Arabidopsis thalian	0.832	0.215	0.381	2.4e-16

TAIR|locus:2165981 BIR1 "AT5G48380" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 83/154 (53%), Positives = 116/154 (75%)

Query:    25 DIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLK 84
             +I CL++ K  +EDP  YL S+W F N+T G+ICKF+GV CWH DEN+VL+++L+  GL+
Sbjct:    31 NIDCLRTFKSQVEDPNRYL-STWVFGNETAGYICKFSGVTCWHDDENRVLSIKLSGYGLR 89

Query:    85 GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCS 144
             G FP  ++ C+ +TGLDLS N   G LP +IS L+  +T LDLS N+FSG IP  ++N +
Sbjct:    90 GVFPPAVKLCADLTGLDLSRNNFSGPLPANISTLIPLVTILDLSYNSFSGEIPMLISNIT 149

Query:   145 YLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             +LN+L L HN+F+G +PPQL QLGRLK+FSV++N
Sbjct:   150 FLNTLMLQHNQFTGTLPPQLAQLGRLKTFSVSDN 183

GO:0004672 "protein kinase activity" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016301 "kinase activity" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2088937 AT3G28450 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 85/164 (51%), Positives = 111/164 (67%)

Query:    15 CGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVL 74
             C  +    ++DI CL+ +K SL DP N L S WNF+N T GF+C F GV CW+  EN+V+
Sbjct:    23 CSSVMAADEDDIRCLRGLKASLTDPQNALKS-WNFDNTTLGFLCNFVGVSCWNNQENRVI 81

Query:    75 NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
             NL L DMGL G+ P  ++ C+S+  LDLSSN+L G++P ++   + FL  LDLS+N  +G
Sbjct:    82 NLELRDMGLSGKIPDSLQYCASLQKLDLSSNRLSGNIPTELCNWLPFLVSLDLSNNELNG 141

Query:   135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              IP +LA CS++NSL L  NR SGQIP Q   LGRL  FSVANN
Sbjct:   142 EIPPDLAKCSFVNSLVLSDNRLSGQIPVQFSALGRLGRFSVANN 185

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2205834 AT1G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 71/156 (45%), Positives = 100/156 (64%)

Query:    23 KEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMG 82
             ++D+ CL+ +K+SL DP + L SSW+F N +   ICK TGV CW+  EN++++L+L  M 
Sbjct:    25 EDDVLCLQGLKNSLIDPSSRL-SSWSFPNSSASSICKLTGVSCWNEKENRIISLQLQSMQ 83

Query:    83 LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
             L G+ P  ++ C S+  LDLS N L GS+P  I   + +L  LDLS N   GSIPT +  
Sbjct:    84 LAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVE 143

Query:   143 CSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             C +LN+L L  N+ SG IP QL +L RL+  S+A N
Sbjct:   144 CKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGN 179

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2020558 AT1G69990 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 1.5e-34, P = 1.5e-34
 Identities = 71/156 (45%), Positives = 101/156 (64%)

Query:    23 KEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMG 82
             ++D+ CLK  K SL+DP N LN+ W+F N +   ICK TGV CW+  EN++L+L+L  M 
Sbjct:    19 EDDVLCLKGFKSSLKDPSNQLNT-WSFPNSSSS-ICKLTGVSCWNAKENRILSLQLQSMQ 76

Query:    83 LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
             L GQ P  ++ C S+  LDLS N   G +P  I   + +L  LDLS N  SGSIP+ + +
Sbjct:    77 LSGQIPESLKLCRSLQSLDLSFNDFSGLIPSQICSWLPYLVTLDLSGNKLSGSIPSQIVD 136

Query:   143 CSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             C +LNSL L+ N+ +G IP +L +L RL+  S+A+N
Sbjct:   137 CKFLNSLALNQNKLTGSIPSELTRLNRLQRLSLADN 172

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2097305 RLP44 "AT3G49750" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 71/171 (41%), Positives = 99/171 (57%)

Query:    10 LIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWN--FNNDTEGFICKFTGVECWH 67
             LI +T   L      D ACLK+++ +LEDP + L +  N  F+N   GF     G  C  
Sbjct:    13 LIFQTAQRLTTADPNDEACLKNLRQNLEDPASNLRNWTNSVFSNPCSGFTSYLPGATC-- 70

Query:    68 PDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDL 127
              +  ++  L LT++ L+G     + NC+++  LDLSSN++ G +P +I  LV  L  L+L
Sbjct:    71 -NNGRIYKLSLTNLSLRGSISPFLSNCTNLQSLDLSSNQISGVIPPEIQYLVN-LAVLNL 128

Query:   128 SSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             SSN+ SG I   LA C+YLN + L  N  SGQIP QLG L RL +F V+NN
Sbjct:   129 SSNHLSGEITPQLALCAYLNVIDLHDNELSGQIPQQLGLLARLSAFDVSNN 179

GO:0007165 "signal transduction" evidence=IC

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2156218 RLP57 "AT5G65830" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 70/172 (40%), Positives = 95/172 (55%)

Query:    10 LIIETCGGLRYGTKEDIACLKSIKDSLEDPFNYLNSSWN---FNNDTEGFICKFTGVECW 66
             L  ET   L  G   D ACL +++ SLEDP N L + W    F N   GF     GV C 
Sbjct:    20 LSFETAQRLVTGDPNDEACLTNLRQSLEDPANNLRN-WTKSFFINPCSGFSSYLHGVIC- 77

Query:    67 HPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLD 126
               +  ++  L LT++ L+G     + NC+++  LDLSSN++ G +P  +   V  L  L+
Sbjct:    78 --NNGRIYKLSLTNLSLRGSISPFLSNCTNLQSLDLSSNQISGEIPPQLQFFVN-LAVLN 134

Query:   127 LSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             LSSN  SG I   +A C+YLN + L  N+ SGQIP Q G L RL +F V+NN
Sbjct:   135 LSSNRLSGQISPQIALCAYLNVIDLHDNQLSGQIPFQFGLLARLTAFDVSNN 186

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 49/110 (44%), Positives = 66/110 (60%)

Query:    72 KVLNLRLTDM---GLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLS 128
             ++ NLR+ D+    L G+ P  I N S +T L LS N+  G +P  I  L   LT L LS
Sbjct:   123 RLQNLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENL-SRLTSLHLS 181

Query:   129 SNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             SN FSG IP+++ N S+L SL+L  N+FSGQIP  +G L  L   S+ +N
Sbjct:   182 SNQFSGQIPSSIGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSN 231

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 58/160 (36%), Positives = 85/160 (53%)

Query:    20 YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLT 79
             +   +D   L+ +K SL+DP +YL SSWN +ND     C+++GV C   D + V ++ L+
Sbjct:    14 FSLNQDGFILQQVKLSLDDPDSYL-SSWN-SNDASP--CRWSGVSC-AGDFSSVTSVDLS 68

Query:    80 DMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN 139
                L G FP  I   S++  L L +N +  +LP +I+      T LDLS N  +G +P  
Sbjct:    69 SANLAGPFPSVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQT-LDLSQNLLTGELPQT 127

Query:   140 LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
             LA+   L  L L  N FSG IP   G+   L+  S+  NL
Sbjct:   128 LADIPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNL 167

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2139320 AT4G03010 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 56/160 (35%), Positives = 83/160 (51%)

Query:    25 DIACLKSIKDSLED-PFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDM-- 81
             D   L++I+ SL+D P +    SW+F +D     C F GV C   D++KV  L L D   
Sbjct:    28 DFLALQAIRKSLDDLPGSNFFDSWDFTSDP----CNFAGVYC---DDDKVTALNLGDPRA 80

Query:    82 ---GLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT 138
                GL G+    I   S++T L +   ++ GSLP  IS+    L  L +S N  SG IP 
Sbjct:    81 GSPGLSGRIDPAIGKLSALTELSIVPGRIMGSLPHTISQSKN-LRFLAISRNFISGEIPA 139

Query:   139 NLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             +L+    L +L L +N+ +G IPP +G L  L +  + +N
Sbjct:   140 SLSELRGLKTLDLSYNQLTGSIPPSIGSLPELSNLILCHN 179

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2050877 AT2G45340 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 61/160 (38%), Positives = 82/160 (51%)

Query:    22 TKEDIACLKSIKDSLEDPFNYLNSSWNFNND--TEGFICKFTGVECWHPDENK-VLNLRL 78
             +  ++  L  IK SL DP     +SW  + D  + G    F GV C   D N+ V N+ L
Sbjct:    23 SSSELDILLDIKSSL-DPEKRFLTSWTPDADPCSSG---SFDGVAC---DGNRRVANISL 75

Query:    79 TDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT 138
               MGL G  P  I   +S+TGL L  N L G +P DIS L   LT L L+ NN SG IP 
Sbjct:    76 QGMGLTGTIPPSIGLLTSLTGLYLHFNSLTGHIPKDISNLP-LLTDLYLNVNNLSGEIPP 134

Query:   139 NLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              + N   L  ++L +N+ SG IP Q G L ++   ++  N
Sbjct:   135 LIGNLDNLQVIQLCYNKLSGSIPTQFGSLKKITVLALQYN 174

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00012145001 SubName- Full=Chromosome undetermined scaffold_351, whole genome shotgun sequence; (605 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 9/155 (5%)

Query: 24  EDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGL 83
           E++  L S K S+ DP  YL S+WN + D    +C + G+ C   + ++V+++ L+   +
Sbjct: 29  EELELLLSFKSSINDPLKYL-SNWNSSAD----VCLWQGITC--NNSSRVVSIDLSGKNI 81

Query: 84  KGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANC 143
            G+    I     +  ++LS+N+L G +PDDI      L  L+LS+NNF+GSIP      
Sbjct: 82  SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN 141

Query: 144 SYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             L +L L +N  SG+IP  +G    LK   +  N
Sbjct: 142 --LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.9 bits (184), Expect = 4e-16
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           NL L+     G  PR + + S +  L LS NKL G +PD++S     L  LDLS N  SG
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK-LVSLDLSHNQLSG 537

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            IP + +    L+ L L  N+ SG+IP  LG +  L   ++++N 
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.5 bits (183), Expect = 5e-16
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 25/167 (14%)

Query: 24  EDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFIC-----KFTGVECWHPDENK----VL 74
           E+++ L+++K SL  P   L   WN      G  C      ++G +C   D  K    + 
Sbjct: 372 EEVSALQTLKSSLGLP---LRFGWN------GDPCVPQQHPWSGADC-QFDSTKGKWFID 421

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
            L L + GL+G  P  I     +  ++LS N + G++P  +  +   L  LDLS N+F+G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNG 480

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRL---KSFSVANN 178
           SIP +L   + L  L L+ N  SG++P  LG  GRL    SF+  +N
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALG--GRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 2/107 (1%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
           +++ L+L++  L G+ P  + +C  +  LDLS N+L G +P   S++   L+ LDLS N 
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM-PVLSQLDLSQNQ 558

Query: 132 FSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            SG IP NL N   L  + + HN   G +P   G    + + +VA N
Sbjct: 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGN 604

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 26/130 (20%)

Query: 75  NLRLTDMG---LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKL------------- 118
           +L++ D+G   L G+ P  + N +S+  L L+SN+L G +P ++ ++             
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 119 -------VGFLTGL---DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLG 168
                  +G LT L   DL  NN +G IP++L N   L  L L  N+ SG IPP +  L 
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284

Query: 169 RLKSFSVANN 178
           +L S  +++N
Sbjct: 285 KLISLDLSDN 294

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 5e-11
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L L      G+ P  + +   +  L L SNK  G +P ++ K    LT LDLS+NN +G 
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN-LTVLDLSTNNLTGE 371

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           IP  L +   L  L L  N   G+IP  LG    L+   + +N
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L +++  L+G+      +  S+  L L+ NK +G LPD  S     L  LDLS N FSG+
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGA 490

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +P  L + S L  LKL  N+ SG+IP +L    +L S  +++N
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L+L      G+ P+ +   +++T LDLS+N L G +P+ +    G L  L L SN+  G 
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGE 395

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           IP +L  C  L  ++L  N FSG++P +  +L  +    ++NN
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 69  DENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISK--LVGFLTGLD 126
               +  L L    L+G+ P+ +  C S+  + L  N   G LP + +K  LV F   LD
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF---LD 434

Query: 127 LSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           +S+NN  G I +   +   L  L L  N+F G +P   G   RL++  ++ N 
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQ 486

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
           K+++L L+D  L G+ P  +    ++  L L SN   G +P  ++ L   L  L L SN 
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR-LQVLQLWSNK 343

Query: 132 FSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRL 170
           FSG IP NL   + L  L L  N  +G+IP  L   G L
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.7 bits (129), Expect = 7e-09
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
           L G  P  + N  ++  L L  NKL G +P  I  L   L  LDLS N+ SG IP  +  
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK-LISLDLSDNSLSGEIPELVIQ 306

Query: 143 CSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              L  L L  N F+G+IP  L  L RL+   + +N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 24 EDIACLKSIKDSL-EDPFNYLNSSWNFNNDTEGFICKFTGVECW 66
          +D   L + K SL  DP   L SSWN ++      C +TGV C 
Sbjct: 3  DDRDALLAFKSSLNGDPSGAL-SSWNPSSSD---PCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
PLN03150	623	hypothetical protein; Provisional	99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.35
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
PLN03150	623	hypothetical protein; Provisional	99.27
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.1
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.05
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.73
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.68
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.67
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.66
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.65
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.59
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.5
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.27
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.02
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.68
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.66
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.02
PRK15386	426	type III secretion protein GogB; Provisional	96.97
PRK15386	426	type III secretion protein GogB; Provisional	96.77
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.74
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.61
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.47
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.38
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.91
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.61
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.13
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.73
smart00370	26	LRR Leucine-rich repeats, outliers.	94.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.17
smart00370	26	LRR Leucine-rich repeats, outliers.	93.35
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.35
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.5
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.76
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.91

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=1.1e-20  Score=167.91  Aligned_cols=150  Identities=34%  Similarity=0.619  Sum_probs=113.7

Q ss_pred             CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcccceeeecCCCCCcEEEEEecCCCceeeCCccCcCCCCCcEEE
Q 042065           22 TKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLD  101 (179)
Q Consensus        22 ~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~  101 (179)
                      .++|+.||++|++++.+|...+. +|+.    ..++|.|.|++|..  .++|+.|+++++++.+.++..+..+++|+.|+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~-~w~~----~~~~c~w~gv~c~~--~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~   99 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLS-NWNS----SADVCLWQGITCNN--SSRVVSIDLSGKNISGKISSAIFRLPYIQTIN   99 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCC-CCCC----CCCCCcCcceecCC--CCcEEEEEecCCCccccCChHHhCCCCCCEEE
Confidence            55899999999999987766676 8973    34789999999975  46899999999999999999999999999999


Q ss_pred             cccCCCCCCChhHHHhcccCccEEEcccCcCCcc----------------------cchhccCCccCCEeecccccCccc
Q 042065          102 LSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS----------------------IPTNLANCSYLNSLKLDHNRFSGQ  159 (179)
Q Consensus       102 L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~----------------------~p~~~~~l~~L~~L~l~~n~l~g~  159 (179)
                      +++|.++|.+|..++..+++|++|++++|.+++.                      +|..++.+++|++|++++|.+.+.
T Consensus       100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  179 (968)
T PLN00113        100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK  179 (968)
T ss_pred             CCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence            9999999899988773267777777776666554                      444455555555666655555555


Q ss_pred             CchhhcCCCCCCeEeccCC
Q 042065          160 IPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       160 ~p~~~~~l~~L~~L~l~~N  178 (179)
                      +|..++++++|++|++++|
T Consensus       180 ~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             CChhhhhCcCCCeeeccCC
Confidence            5555555566666665554

>PLN03150 hypothetical protein; Provisional

Probab=99.83  E-value=5.8e-20  Score=156.37  Aligned_cols=156  Identities=29%  Similarity=0.487  Sum_probs=131.2

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcccceeeecCCC---CCcEEEEEecCCCceeeCCccCcCCC
Q 042065           19 RYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPD---ENKVLNLRLTDMGLKGQFPRGIRNCS   95 (179)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~~~---~~~l~~L~l~~~~l~~~~p~~l~~l~   95 (179)
                      .....+|..||..+|+.+..+..  . +|..+.+ .+..|.|.|+.|....   ...++.|+|+++.+.|.+|..+..++
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~-~W~g~~C-~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~  442 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--F-GWNGDPC-VPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR  442 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--C-CCCCCCC-CCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence            34566899999999999876532  2 8975322 1223489999996311   12599999999999999999999999


Q ss_pred             CCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCC-CCCCeEe
Q 042065           96 SMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQL-GRLKSFS  174 (179)
Q Consensus        96 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l-~~L~~L~  174 (179)
                      +|+.|+|++|.+.|.+|..+.. +++|+.|+|++|+++|.+|..++.+++|+.|++++|+++|.+|..++.+ .++..++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~-l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~  521 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN  521 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhC-CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence            9999999999999999999998 9999999999999999999999999999999999999999999998764 4567788


Q ss_pred             ccCCC
Q 042065          175 VANNL  179 (179)
Q Consensus       175 l~~N~  179 (179)
                      +.+|.
T Consensus       522 ~~~N~  526 (623)
T PLN03150        522 FTDNA  526 (623)
T ss_pred             ecCCc
Confidence            87763

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.55  E-value=1.2e-14  Score=129.60  Aligned_cols=108  Identities=36%  Similarity=0.617  Sum_probs=99.1

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+.. +++|+.|++++|.++|.+|..+..+++|+.|+
T Consensus       475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  553 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS-CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD  553 (968)
T ss_pred             ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC-ccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence            46888999999998888888889999999999999999899999888 89999999999999999999999999999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|+++|.+|..+..+++|+++++++|+
T Consensus       554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~  582 (968)
T PLN00113        554 LSQNQLSGEIPKNLGNVESLVQVNISHNH  582 (968)
T ss_pred             CCCCcccccCChhHhcCcccCEEeccCCc
Confidence            99999999999999999999999999885

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.35  E-value=2e-14  Score=102.26  Aligned_cols=105  Identities=27%  Similarity=0.445  Sum_probs=81.8

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .+.++.|.+++|.++ .+|+.+..+.+|+.|++.+|++. .+|.++.. ++.|+.|+++.|++. .+|..|+.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhh
Confidence            356888888888887 67777888888899999999887 88888888 888888888888888 788888888888888


Q ss_pred             ecccccCcc------------------------cCchhhcCCCCCCeEeccCC
Q 042065          150 KLDHNRFSG------------------------QIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       150 ~l~~n~l~g------------------------~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++..|++..                        .+|+.++++++|+.|.+..|
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence            877776541                        34555566666666666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=1.6e-13  Score=97.78  Aligned_cols=105  Identities=29%  Similarity=0.468  Sum_probs=88.7

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC-CCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY-GSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~-g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .+++.|++.-|.+. ..|..|+.++.|++||+.+|++. ..+|..++. +..|+-|+|++|.+. .+|..++.+++|+.|
T Consensus        79 ~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil  155 (264)
T KOG0617|consen   79 PKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQIL  155 (264)
T ss_pred             hhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEE
Confidence            45666677666665 57788888888888888888876 347888887 778888888899888 899999999999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      .+..|.+- ++|.+++.+.+|+.|++.+|+
T Consensus       156 ~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  156 SLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             eeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            99999998 899999999999999999885

>PLN03150 hypothetical protein; Provisional

Probab=99.27  E-value=8.7e-12  Score=106.59  Aligned_cols=83  Identities=39%  Similarity=0.651  Sum_probs=79.7

Q ss_pred             CCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEec
Q 042065           96 SMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSV  175 (179)
Q Consensus        96 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l  175 (179)
                      .++.|+|++|.+.|.+|..+.. +++|+.|+|++|.+.|.+|..++.+++|+.|++++|+++|.+|..++.+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            4788999999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 042065          176 ANNL  179 (179)
Q Consensus       176 ~~N~  179 (179)
                      ++|+
T Consensus       498 s~N~  501 (623)
T PLN03150        498 NGNS  501 (623)
T ss_pred             cCCc
Confidence            9984

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.10  E-value=3.2e-11  Score=95.78  Aligned_cols=103  Identities=29%  Similarity=0.443  Sum_probs=63.6

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch-hccCCccCCEee
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSLK  150 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~  150 (179)
                      +++.|++++|-+. .+|.+++.+-.||.|+++.|+|. .+|..+-. +..++.+-.++|++. .++. .+.+|.+|.+|+
T Consensus       436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLD  511 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTLETLLASNNQIG-SVDPSGLKNMRNLTTLD  511 (565)
T ss_pred             cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh-HHHHHHHHhcccccc-ccChHHhhhhhhcceec
Confidence            3444444444333 34444444444444444444444 44443333 333333333334444 3443 378899999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +.+|.+. .+|+.+++|.+|++|++.+|.
T Consensus       512 L~nNdlq-~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  512 LQNNDLQ-QIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             cCCCchh-hCChhhccccceeEEEecCCc
Confidence            9999999 899999999999999999984

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.05  E-value=2.6e-11  Score=100.19  Aligned_cols=106  Identities=25%  Similarity=0.319  Sum_probs=76.8

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch---hccCCccCC
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT---NLANCSYLN  147 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~---~~~~l~~L~  147 (179)
                      .++..|+|++|.++..-+.+|..+..|++|.|++|+++ .+-+..+..+++|+.|||.+|.+++.+-+   .+.+|++|+
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr  395 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR  395 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence            35666666666666555556666666666666666665 44444443477888888888888876554   366789999


Q ss_pred             EeecccccCcccCc-hhhcCCCCCCeEeccCC
Q 042065          148 SLKLDHNRFSGQIP-PQLGQLGRLKSFSVANN  178 (179)
Q Consensus       148 ~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N  178 (179)
                      .|.+.+|++. .+| ..|..+..|++|||++|
T Consensus       396 kL~l~gNqlk-~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  396 KLRLTGNQLK-SIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             heeecCceee-ecchhhhccCcccceecCCCC
Confidence            9999999998 666 56888999999999988

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.05  E-value=1.1e-11  Score=106.59  Aligned_cols=103  Identities=31%  Similarity=0.417  Sum_probs=53.6

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|+|++|.+.......+.+++.|++|+|++|.++ .+|..+.. ++.|+.|...+|++. .+| .+..++.|+.+|
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~-~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN-LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh-hhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            34555555555554222233445555555555555555 55555555 555555555555555 455 455556666666


Q ss_pred             cccccCccc-CchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQ-IPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~-~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++.|+++.. +|.... .++|++||+++|
T Consensus       459 lS~N~L~~~~l~~~~p-~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALP-SPNLKYLDLSGN  486 (1081)
T ss_pred             cccchhhhhhhhhhCC-CcccceeeccCC
Confidence            666655422 222221 155666666665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=3.3e-10  Score=81.88  Aligned_cols=100  Identities=25%  Similarity=0.338  Sum_probs=43.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc--hhccCCccCCE
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~~  148 (179)
                      .+++.|++++|.++ .++ .+..++.|+.|++++|.++ .+.+.+...+++|++|++++|++.. +-  ..+..+++|+.
T Consensus        42 ~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   42 DKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD-LNELEPLSSLPKLRV  117 (175)
T ss_dssp             TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S-CCCCGGGGG-TT--E
T ss_pred             cCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC-hHHhHHHHcCCCcce
Confidence            46788888888877 343 3667788888888888887 5654443227788888888888763 22  34567788888


Q ss_pred             eecccccCcccCch----hhcCCCCCCeEec
Q 042065          149 LKLDHNRFSGQIPP----QLGQLGRLKSFSV  175 (179)
Q Consensus       149 L~l~~n~l~g~~p~----~~~~l~~L~~L~l  175 (179)
                      |++.+|+++ ..+.    .+..+|+|+.||-
T Consensus       118 L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  118 LSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred             eeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence            888888887 3332    2556778887764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=1.2e-09  Score=78.98  Aligned_cols=101  Identities=30%  Similarity=0.406  Sum_probs=39.7

Q ss_pred             CcEEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhc-cCCccCCE
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL-ANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~  148 (179)
                      .++++|+|++|.+.. +. .++ .+.+|+.|++++|.++ .++ .+.. +++|+.|++++|+++ .+++.+ ..+++|+.
T Consensus        19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~-L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPG-LPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccC-hhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            357899999999873 33 355 5789999999999998 665 4555 899999999999999 676555 46899999


Q ss_pred             eecccccCcccCc--hhhcCCCCCCeEeccCC
Q 042065          149 LKLDHNRFSGQIP--PQLGQLGRLKSFSVANN  178 (179)
Q Consensus       149 L~l~~n~l~g~~p--~~~~~l~~L~~L~l~~N  178 (179)
                      |++++|++. .+-  ..+..+++|+.|++.+|
T Consensus        93 L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   93 LYLSNNKIS-DLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             EE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred             EECcCCcCC-ChHHhHHHHcCCCcceeeccCC
Confidence            999999997 332  44678899999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.93  E-value=2e-10  Score=98.88  Aligned_cols=105  Identities=28%  Similarity=0.380  Sum_probs=97.4

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..++.|.+.+|.++...-+.+.++++|++|+|++|++. .+|....+.+..|++|+|++|.++ .+|..+..+..|++|.
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence            46888999999999887778899999999999999997 899888777999999999999999 8999999999999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ..+|++. .+| ++..+++|+.+|++.|+
T Consensus       437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             hcCCcee-ech-hhhhcCcceEEecccch
Confidence            9999999 889 89999999999999985

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=5.6e-10  Score=66.84  Aligned_cols=57  Identities=32%  Similarity=0.542  Sum_probs=27.6

Q ss_pred             CccEEEcccCcCCcccc-hhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          121 FLTGLDLSSNNFSGSIP-TNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       121 ~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +|+.|++++|+++ .+| ..+.++++|++|++++|+++..-|..|..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3445555555555 233 34444555555555555554332334455555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1.1e-09  Score=65.53  Aligned_cols=61  Identities=36%  Similarity=0.490  Sum_probs=53.1

Q ss_pred             CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccC
Q 042065           95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRF  156 (179)
Q Consensus        95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l  156 (179)
                      ++|++|++++|.++ .+|...++.+++|++|++++|.++...|..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            47899999999998 77765555599999999999999966566899999999999999975

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.91  E-value=2.1e-10  Score=95.84  Aligned_cols=104  Identities=25%  Similarity=0.344  Sum_probs=53.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..++.|+|+.|.+. .+|..+...+++-+|+|++|++. +||..++..+.-|..|||++|++. .+|+.+..+..|++|.
T Consensus       103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence            34555555555555 45555555555555555555554 555544433555555555555555 5555555555555555


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVAN  177 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~  177 (179)
                      |++|.+.-.--..+..|++|+.|++++
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhccc
Confidence            555554311122333444555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.91  E-value=8.5e-11  Score=93.43  Aligned_cols=102  Identities=27%  Similarity=0.435  Sum_probs=84.6

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++..|++..|++. .+| +|.+++.|.+|+++.|++. .+|.+...-++++..||+.+|++. .+|..+.-+++|+.|+
T Consensus       206 ~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD  281 (565)
T KOG0472|consen  206 ESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD  281 (565)
T ss_pred             hhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence            35556677777776 556 6788888888888888887 888888744889999999999999 8999998899999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|.++ .+|.+++++ .|+.|.+.+|
T Consensus       282 lSNN~is-~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  282 LSNNDIS-SLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             ccCCccc-cCCcccccc-eeeehhhcCC
Confidence            9999999 789999988 7888888777

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.89  E-value=1.7e-09  Score=89.63  Aligned_cols=125  Identities=24%  Similarity=0.298  Sum_probs=91.0

Q ss_pred             CCCCCCcccceeeecCCC-------------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhc
Q 042065           52 DTEGFICKFTGVECWHPD-------------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKL  118 (179)
Q Consensus        52 ~~~~~~c~w~gv~c~~~~-------------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~  118 (179)
                      +...++|.-.-..|....             .+.++.|++++|.+...-+..|.++++|+++.+..|.++ .+|..... 
T Consensus        46 cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-  123 (873)
T KOG4194|consen   46 CPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-  123 (873)
T ss_pred             CCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-
Confidence            334566766666675422             245678999999998766777888999999999999988 88876655 


Q ss_pred             ccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCc-hhhcCCCCCCeEeccCCC
Q 042065          119 VGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIP-PQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       119 l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N~  179 (179)
                      ..+|+.|+|.+|.++..-.+.+..++.|+.|+|+.|.++ .+| +.|..-.++++|+|++|+
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~  184 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNR  184 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccc
Confidence            677888888888887544556777788888888888887 554 334455667777777763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.88  E-value=3.3e-10  Score=94.77  Aligned_cols=104  Identities=32%  Similarity=0.474  Sum_probs=81.0

Q ss_pred             CcEEEEEecCCCcee-eCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchh-ccCCccCCE
Q 042065           71 NKVLNLRLTDMGLKG-QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~-~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L~~  148 (179)
                      ++++++.++.|++.. .+|+.+-.+..|+.|||++|++. .+|..+.. .+++..|+|++|++. +||.. +.+++.|-.
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIE-TIPNSLFINLTDLLF  154 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence            456777777777652 36777778888888888888887 88888877 777888888888888 67764 457778888


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      |+|+.|.+. .+|+.+.++..|+.|+|++|
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCC
Confidence            888888887 78888888888888888877

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.73  E-value=2.2e-09  Score=82.84  Aligned_cols=101  Identities=21%  Similarity=0.304  Sum_probs=63.1

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..+++++|++|.++ ++..++.-++.++.|+++.|.+. .+- ++.. +++|+.|||++|.++ .+-.+...+-+.+.|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~-L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAE-LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhh-cccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            44677888888877 67777777788888888888886 443 3555 788888888888776 4444444444555555


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|.+. .+ ..++.+-+|..||+++|
T Consensus       359 La~N~iE-~L-SGL~KLYSLvnLDl~~N  384 (490)
T KOG1259|consen  359 LAQNKIE-TL-SGLRKLYSLVNLDLSSN  384 (490)
T ss_pred             hhhhhHh-hh-hhhHhhhhheecccccc
Confidence            5555443 11 22333344444444444

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.72  E-value=2.1e-08  Score=55.63  Aligned_cols=41  Identities=34%  Similarity=0.636  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHhCCC-CCCCCCCCCCCCCCCCCCCcccceeeec
Q 042065           23 KEDIACLKSIKDSLED-PFNYLNSSWNFNNDTEGFICKFTGVECW   66 (179)
Q Consensus        23 ~~~~~~l~~~~~~~~~-~~~~~~~~W~~~~~~~~~~c~w~gv~c~   66 (179)
                      ++|.+||++||+++.. +...+. +|+...  ..++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~-~W~~~~--~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLS-SWNPSS--DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCT-T--TT----S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccc-cCCCcC--CCCCeeeccEEeC
Confidence            5799999999999985 556676 999653  3589999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.71  E-value=4.3e-07  Score=79.17  Aligned_cols=98  Identities=36%  Similarity=0.519  Sum_probs=51.5

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHh------------------cccCccEEEcccCcCC
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISK------------------LVGFLTGLDLSSNNFS  133 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~------------------~l~~L~~L~L~~n~l~  133 (179)
                      +.+.|++++++++ .+|..+.  +.|+.|++++|.++ .+|..+..                  +.+.|+.|++++|.+.
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~  254 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT  254 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC
Confidence            3456666666665 3454332  34555555555555 45543321                  0123444455555444


Q ss_pred             cccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          134 GSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       134 g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                       .+|..+.  .+|+.|+++.|+++ .+|..+.  ++|+.|++++|+
T Consensus       255 -~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~  294 (754)
T PRK15370        255 -ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNS  294 (754)
T ss_pred             -cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCc
Confidence             4444332  35666666666666 4565443  367777777663

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.70  E-value=9.6e-09  Score=80.59  Aligned_cols=105  Identities=22%  Similarity=0.403  Sum_probs=56.1

Q ss_pred             EEEEEecCCCcee----eCCccCcCC-CCCcEEEcccCCCCCCCh----hHHHhcccCccEEEcccCcCCc----ccchh
Q 042065           73 VLNLRLTDMGLKG----QFPRGIRNC-SSMTGLDLSSNKLYGSLP----DDISKLVGFLTGLDLSSNNFSG----SIPTN  139 (179)
Q Consensus        73 l~~L~l~~~~l~~----~~p~~l~~l-~~L~~L~L~~n~l~g~~p----~~~~~~l~~L~~L~L~~n~l~g----~~p~~  139 (179)
                      +++|++++|.+..    .+...+..+ ++|+.|++++|.+++..+    ..+.. +..|+.|++++|.+++    .++..
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA-NRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh-CCCcCEEECcCCCCchHHHHHHHHH
Confidence            5566666555541    112223344 566666666666653222    22222 4456666666666653    22333


Q ss_pred             ccCCccCCEeecccccCccc----CchhhcCCCCCCeEeccCC
Q 042065          140 LANCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       140 ~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N  178 (179)
                      +..+++|+.|++++|.+++.    ++..+..+++|++|++++|
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            44455677777777766522    2334455667777777766

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.70  E-value=4.7e-08  Score=85.07  Aligned_cols=94  Identities=26%  Similarity=0.430  Sum_probs=65.1

Q ss_pred             EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065           73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD  152 (179)
Q Consensus        73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~  152 (179)
                      ++.|++++|.++ .+|..+  .+.|+.|++++|.+. .+|..+.   ..|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       222 L~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        222 IKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            444444444443 233322  235666777777766 6666553   47999999999999 7887664  589999999


Q ss_pred             cccCcccCchhhcCCCCCCeEeccCCC
Q 042065          153 HNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +|+++ .+|..+.  ++|+.|++++|+
T Consensus       292 ~N~Lt-~LP~~lp--~sL~~L~Ls~N~  315 (754)
T PRK15370        292 DNSIR-TLPAHLP--SGITHLNVQSNS  315 (754)
T ss_pred             CCccc-cCcccch--hhHHHHHhcCCc
Confidence            99999 6776553  478888888874

>PLN03210 Resistant to P

Probab=98.70  E-value=3.7e-08  Score=89.84  Aligned_cols=101  Identities=20%  Similarity=0.315  Sum_probs=60.7

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ . +++|+.|++++|.....+|..   .++|+.|+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~  852 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N-LESLESLDLSGCSRLRTFPDI---STNISDLN  852 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-ccccCEEECCCCCcccccccc---ccccCEeE
Confidence            467888888887777788888888888888888775444677554 3 555666666555433233321   23444555


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVAN  177 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~  177 (179)
                      +++|.++ .+|..+..+++|+.|++++
T Consensus       853 Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        853 LSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             CCCCCCc-cChHHHhcCCCCCEEECCC
Confidence            5555554 4454444455555554444

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.68  E-value=1.6e-08  Score=79.40  Aligned_cols=107  Identities=22%  Similarity=0.308  Sum_probs=56.1

Q ss_pred             CcEEEEEecCCCceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcc----cch
Q 042065           71 NKVLNLRLTDMGLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGS----IPT  138 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~----~p~  138 (179)
                      .+++.|++++|.+++.    ++..+..++.|+.|++++|.+++.    ++..+.. +++|++|++++|.+.+.    ++.
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHH
Confidence            3566666666666532    222344455666666666666532    2222333 34666666666666522    233


Q ss_pred             hccCCccCCEeecccccCcccCchhhc-----CCCCCCeEeccCC
Q 042065          139 NLANCSYLNSLKLDHNRFSGQIPPQLG-----QLGRLKSFSVANN  178 (179)
Q Consensus       139 ~~~~l~~L~~L~l~~n~l~g~~p~~~~-----~l~~L~~L~l~~N  178 (179)
                      .+..+++|++|++++|.+++.-...+.     ..+.|+.|++++|
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence            345556666666666666532122211     1256666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.67  E-value=4.9e-09  Score=83.29  Aligned_cols=122  Identities=23%  Similarity=0.306  Sum_probs=88.5

Q ss_pred             CCCccc---ceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCcc
Q 042065           55 GFICKF---TGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLT  123 (179)
Q Consensus        55 ~~~c~w---~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~  123 (179)
                      ++.|+=   .-|.|....        +...++|+|..|.++...+..|..+++|++|||++|.++-.-|..+.. +.++.
T Consensus        40 pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-L~~l~  118 (498)
T KOG4237|consen   40 PCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG-LASLL  118 (498)
T ss_pred             CcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh-hHhhh
Confidence            344544   346776422        356789999999999766778999999999999999999555666655 77777


Q ss_pred             EEEccc-CcCCcccch-hccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          124 GLDLSS-NNFSGSIPT-NLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       124 ~L~L~~-n~l~g~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      .|-+-+ |+++ .+|. .|+++.+|+.|.+.-|++.-.....|..+++|..|.+-.|
T Consensus       119 ~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn  174 (498)
T KOG4237|consen  119 SLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN  174 (498)
T ss_pred             HHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence            766655 8888 5664 5778888888888777777444556667777766666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.66  E-value=3.7e-08  Score=85.69  Aligned_cols=55  Identities=27%  Similarity=0.320  Sum_probs=39.6

Q ss_pred             cCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          120 GFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       120 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|+
T Consensus       402 s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        402 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence            34555666666655 45542   235677888888887 788889999999999999985

>PLN03210 Resistant to P

Probab=98.65  E-value=8.3e-08  Score=87.58  Aligned_cols=104  Identities=18%  Similarity=0.319  Sum_probs=66.7

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++.++.+. .++..+..+++|+.|+|+++.....+|. +.. +++|+.|++.+|.....+|..+..+++|+.|+
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~-l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM-ATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc-CCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            45666666666655 4555566677777777776654445653 444 66777777777655456777777777777777


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++++.....+|..+ ++++|+.|++++|
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            77654444666654 5666666666654

syringae 6; Provisional

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.65  E-value=1.3e-09  Score=75.03  Aligned_cols=87  Identities=24%  Similarity=0.432  Sum_probs=50.7

Q ss_pred             cEEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           72 KVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++.++|++|.+. .+|+.|. .++.++.|++++|.++ .+|.++.. ++.|+.|++++|.+. ..|.-+..+.++..|+
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            4555666666665 3343333 3445666666666665 66666555 666666666666666 5555555566666666


Q ss_pred             cccccCcccCchh
Q 042065          151 LDHNRFSGQIPPQ  163 (179)
Q Consensus       151 l~~n~l~g~~p~~  163 (179)
                      ...|... ++|..
T Consensus       130 s~~na~~-eid~d  141 (177)
T KOG4579|consen  130 SPENARA-EIDVD  141 (177)
T ss_pred             CCCCccc-cCcHH
Confidence            6666655 45443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.64  E-value=2.2e-09  Score=88.66  Aligned_cols=97  Identities=25%  Similarity=0.440  Sum_probs=54.9

Q ss_pred             EEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeeccccc
Q 042065           76 LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNR  155 (179)
Q Consensus        76 L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~  155 (179)
                      |.+++|+++ .+|..++.+..|..||.+.|.+. .+|..+.. +.+|+.|.+..|++. .+|+.+. .-.|..|+++.|+
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk  222 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK  222 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence            334444443 34444444455555555555554 55555555 555555555555555 5555555 2335666777777


Q ss_pred             CcccCchhhcCCCCCCeEeccCC
Q 042065          156 FSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       156 l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++ .+|..|.+|..|++|-|.+|
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccC
Confidence            76 66777777777777766665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.59  E-value=1.1e-08  Score=84.67  Aligned_cols=102  Identities=29%  Similarity=0.456  Sum_probs=84.0

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..+++|+|+.|.+. .+|..+..|+ |+.|-+++|.++ .+|..++. ++.|..||.+.|++. .+|..++.+.+|+.|.
T Consensus       121 ~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~-~~tl~~ld~s~nei~-slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  121 EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL-LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc-chhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence            45677888888877 6777777777 888888888887 88888884 888888888888888 7888888888888888


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +.+|++. .+|+++..++ |..||+++|+
T Consensus       196 vrRn~l~-~lp~El~~Lp-Li~lDfScNk  222 (722)
T KOG0532|consen  196 VRRNHLE-DLPEELCSLP-LIRLDFSCNK  222 (722)
T ss_pred             Hhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence            8888888 7888888655 7888888885

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.56  E-value=4.1e-08  Score=79.68  Aligned_cols=103  Identities=35%  Similarity=0.545  Sum_probs=83.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCC-CCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCS-SMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~-~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..++.|++.++.+. .+++....+. +|+.|++++|.+. .+|..+.. ++.|+.|++++|++. .+|...+..+.|+.|
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhc-cccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            35788888888887 5666666664 8999999999987 78777777 888999999999988 777776678889999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++++|++. .+|........|+.+.+++|
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            99999998 78887766667888888877

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.50  E-value=8.9e-08  Score=84.67  Aligned_cols=105  Identities=29%  Similarity=0.299  Sum_probs=87.5

Q ss_pred             CcEEEEEecCCC--ceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           71 NKVLNLRLTDMG--LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~--l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      +++++|-+.+|.  +.-.....|..++.|++|||++|.--+.+|..++. +-+|++|+++...+. .+|..++++++|.+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            468888888886  44233445778999999999998877799999999 899999999999999 89999999999999


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVAN  177 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~  177 (179)
                      |++..+.....+|.....+.+|++|.+..
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeec
Confidence            99998876546667677799999998753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.40  E-value=7.5e-08  Score=74.55  Aligned_cols=101  Identities=23%  Similarity=0.326  Sum_probs=77.6

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ++++.|++++|++. .+. .+..+++|+.|||++|.++ .+..--.. +.++..|.|+.|.+. .+ ..++.+-+|..|+
T Consensus       307 Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K-LGNIKtL~La~N~iE-~L-SGL~KLYSLvnLD  380 (490)
T KOG1259|consen  307 PKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLK-LGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLD  380 (490)
T ss_pred             cceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhh-hcCEeeeehhhhhHh-hh-hhhHhhhhheecc
Confidence            68999999999997 343 3888999999999999987 55443344 778888888888877 43 3466777888888


Q ss_pred             cccccCcccCc--hhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIP--PQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p--~~~~~l~~L~~L~l~~N  178 (179)
                      +.+|++. .+-  ..+++++.|+++.+.+|
T Consensus       381 l~~N~Ie-~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  381 LSSNQIE-ELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             ccccchh-hHHHhcccccccHHHHHhhcCC
Confidence            8888886 332  34778888888888776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=6.3e-07  Score=49.88  Aligned_cols=36  Identities=39%  Similarity=0.594  Sum_probs=20.3

Q ss_pred             CccEEEcccCcCCcccchhccCCccCCEeecccccCc
Q 042065          121 FLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFS  157 (179)
Q Consensus       121 ~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~  157 (179)
                      +|++|++++|+++ .+|..+.+|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666666 45555566666666666666655

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.36  E-value=3.9e-07  Score=79.47  Aligned_cols=83  Identities=25%  Similarity=0.281  Sum_probs=63.1

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      +++.|++++|.+. .+|..   .++|+.|++++|.++ .+|..    +.+|+.|++++|+++ .+|..+..+++|+.+++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            3555555555555 24432   256778888888887 57753    345788999999999 89999999999999999


Q ss_pred             ccccCcccCchhh
Q 042065          152 DHNRFSGQIPPQL  164 (179)
Q Consensus       152 ~~n~l~g~~p~~~  164 (179)
                      ++|++++..|..+
T Consensus       453 s~N~Ls~~~~~~L  465 (788)
T PRK15387        453 EGNPLSERTLQAL  465 (788)
T ss_pred             CCCCCCchHHHHH
Confidence            9999998877766

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=1.7e-07  Score=76.12  Aligned_cols=99  Identities=31%  Similarity=0.493  Sum_probs=71.7

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      +++.|++++|.+. .+|..+..++.|+.|+++.|.+. .+|..... ++.|+.|++++|++. .+|.....+..|+.+.+
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDL  216 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence            7899999999987 56667788999999999999998 88877655 778889999999888 77776555566777777


Q ss_pred             ccccCcccCchhhcCCCCCCeEec
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSV  175 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l  175 (179)
                      ++|... ..+..+..+.++..+.+
T Consensus       217 ~~N~~~-~~~~~~~~~~~l~~l~l  239 (394)
T COG4886         217 SNNSII-ELLSSLSNLKNLSGLEL  239 (394)
T ss_pred             cCCcce-ecchhhhhccccccccc
Confidence            777432 23333344444443333

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.32  E-value=5.6e-08  Score=67.07  Aligned_cols=103  Identities=24%  Similarity=0.338  Sum_probs=84.4

Q ss_pred             cEEEEEecCCCceeeCCccC---cCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           72 KVLNLRLTDMGLKGQFPRGI---RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l---~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      ....++|+.+.+. .++...   .....|+..+|++|.|. .+|..+...++.++.+++++|+++ .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3456777777764 455443   34456777899999998 899998886778999999999999 89999999999999


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++++.|.+. ..|..+..+.++..|+..+|
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence            999999998 77888888888888887766

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=1e-06  Score=49.02  Aligned_cols=40  Identities=38%  Similarity=0.576  Sum_probs=28.7

Q ss_pred             CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc
Q 042065           95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP  137 (179)
Q Consensus        95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p  137 (179)
                      ++|++|++++|.++ .+|+.+.+ +++|+.|++++|.++ .++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~-l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSN-LPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTT-CTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccCchHhC-CCCCCEEEecCCCCC-CCc
Confidence            35778888888887 77777777 788888888888777 443

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.27  E-value=2.5e-07  Score=73.79  Aligned_cols=88  Identities=20%  Similarity=0.212  Sum_probs=69.1

Q ss_pred             cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCC
Q 042065           90 GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGR  169 (179)
Q Consensus        90 ~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~  169 (179)
                      .|..+++|+.|+|++|.+++.-+..+.. +..+++|.|..|++...-...|.++..|+.|+|.+|+++-.-|..|..+.+
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~-~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEG-AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcc-hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            4778899999999999998444444444 888999999999888444446778888999999999998666888888888


Q ss_pred             CCeEeccCC
Q 042065          170 LKSFSVANN  178 (179)
Q Consensus       170 L~~L~l~~N  178 (179)
                      |..|.+-.|
T Consensus       348 l~~l~l~~N  356 (498)
T KOG4237|consen  348 LSTLNLLSN  356 (498)
T ss_pred             eeeeehccC
Confidence            888887665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.26  E-value=1.6e-06  Score=63.48  Aligned_cols=101  Identities=22%  Similarity=0.322  Sum_probs=80.8

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc--hhccCCccCCEe
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSYLNSL  149 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~~L  149 (179)
                      ....++|++|.+. .+ ..|..++.|..|.+.+|.++ .+-+.+..+++.|..|.|.+|++. .+-  ..+..+++|+.|
T Consensus        43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchh-hc-ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            4678999999876 33 34677899999999999999 777778777899999999999987 333  246788999999


Q ss_pred             ecccccCcccCch----hhcCCCCCCeEeccC
Q 042065          150 KLDHNRFSGQIPP----QLGQLGRLKSFSVAN  177 (179)
Q Consensus       150 ~l~~n~l~g~~p~----~~~~l~~L~~L~l~~  177 (179)
                      .+-+|+.+ ..+.    .+..+++|+.||+.+
T Consensus       119 tll~Npv~-~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchh-cccCceeEEEEecCcceEeehhh
Confidence            99999987 3332    256789999999864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.17  E-value=6.1e-08  Score=82.46  Aligned_cols=100  Identities=21%  Similarity=0.287  Sum_probs=52.3

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      ++...+.++|.+. .+..++.-++.|+.|+|++|.++ .+- .+.. ++.|.+|||+.|.+. .+|.--..-..|+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~-l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRR-LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHh-cccccccccccchhc-cccccchhhhhheeeee
Confidence            3445555555554 34555555566666666666665 222 4555 566666666666666 45542111112555555


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|.++ .+ ..+.++.+|..||+++|
T Consensus       240 rnN~l~-tL-~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  240 RNNALT-TL-RGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             cccHHH-hh-hhHHhhhhhhccchhHh
Confidence            555554 22 23445555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.02  E-value=6.1e-06  Score=73.28  Aligned_cols=104  Identities=22%  Similarity=0.349  Sum_probs=84.2

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCC--CCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK--LYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~--l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      ..++.+.+.++.+. .++... ..+.|+.|-+..|.  +. .++..++.-++.|++|||++|.=-+.+|..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            35667777777665 344433 34579999999986  54 677665555999999999998766799999999999999


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      |++++..+. .+|..+++++.|.+|++..+
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccc
Confidence            999999999 89999999999999998764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.76  E-value=1e-05  Score=66.34  Aligned_cols=101  Identities=29%  Similarity=0.358  Sum_probs=63.2

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++.+|.+.. +...+..+.+|++|++++|.++ .+. .+.. ++.|+.|++.+|.++ .+. .+..++.|+.++
T Consensus        95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~-l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~  168 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLST-LTLLKELNLSGNLIS-DIS-GLESLKSLKLLD  168 (414)
T ss_pred             cceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhh-ccchhhheeccCcch-hcc-CCccchhhhccc
Confidence            456777777777763 3332556777777777777776 332 2233 556777777777777 433 345577777777


Q ss_pred             cccccCcccCchh-hcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~-~~~l~~L~~L~l~~N  178 (179)
                      +++|.+. .+... ...+.+++.+++.+|
T Consensus       169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  169 LSYNRIV-DIENDELSELISLEELDLGGN  196 (414)
T ss_pred             CCcchhh-hhhhhhhhhccchHHHhccCC
Confidence            7777777 33332 355566666666665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.75  E-value=6.5e-07  Score=76.38  Aligned_cols=102  Identities=24%  Similarity=0.239  Sum_probs=79.0

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..++.|+|+.|.++. +. .+..++.|++|||++|.+. .+|.--...+ .|+.|.+.+|.++ .+ ..+.++++|+.|+
T Consensus       187 ~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhccc
Confidence            467899999999873 33 6788999999999999998 7775332213 3999999999988 44 4678999999999


Q ss_pred             cccccCcccCc-hhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIP-PQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p-~~~~~l~~L~~L~l~~N  178 (179)
                      ++.|-+.+.-- ..+..+..|+.|+|.+|
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            99998874321 23456677888888887

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.68  E-value=1.1e-05  Score=66.06  Aligned_cols=101  Identities=27%  Similarity=0.318  Sum_probs=77.4

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      .+..+.++.|.+.. +-..+..+++|..|++.+|.+. .+...+.. +++|++|++++|.++ .+. .+..++.|+.|++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~-~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSS-LVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNL  147 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhh-hhcchheeccccccc-ccc-chhhccchhhhee
Confidence            34555566666653 3344677899999999999998 55544666 889999999999999 443 4667788999999


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      .+|.++ .+ ..+..+++|+.+++++|+
T Consensus       148 ~~N~i~-~~-~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen  148 SGNLIS-DI-SGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             ccCcch-hc-cCCccchhhhcccCCcch
Confidence            999998 43 345558899999999884

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=5.3e-06  Score=67.04  Aligned_cols=105  Identities=22%  Similarity=0.260  Sum_probs=52.7

Q ss_pred             CcEEEEEecCCCceee-CCccCcCCCCCcEEEcccCCCCC--CChhHHHhcccCccEEEcccCcCCcccc--hhccCCcc
Q 042065           71 NKVLNLRLTDMGLKGQ-FPRGIRNCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSY  145 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~L~~n~l~g--~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~  145 (179)
                      ++++.|.++.|+++-. +...+..+++|..|+|..|..-+  ..+..+   +..|++|||++|.+- ..+  ..++.++.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li-~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLI-DFDQGYKVGTLPG  272 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh---hhHHhhccccCCccc-ccccccccccccc
Confidence            3444444554444311 11223344555555555552111  112222   335666666666655 344  34566677


Q ss_pred             CCEeecccccCccc-Cchh-----hcCCCCCCeEeccCCC
Q 042065          146 LNSLKLDHNRFSGQ-IPPQ-----LGQLGRLKSFSVANNL  179 (179)
Q Consensus       146 L~~L~l~~n~l~g~-~p~~-----~~~l~~L~~L~l~~N~  179 (179)
                      |+.|+++.+.+... .|+.     ...+++|++|++..|+
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            77777776666511 1222     2356778888777764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=6.6e-06  Score=66.48  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=15.6

Q ss_pred             CccCCEeecccccCcccCc--hhhcCCCCCCeEeccC
Q 042065          143 CSYLNSLKLDHNRFSGQIP--PQLGQLGRLKSFSVAN  177 (179)
Q Consensus       143 l~~L~~L~l~~n~l~g~~p--~~~~~l~~L~~L~l~~  177 (179)
                      ++.|+.|+|++|++. .++  ...+.++.|..|.++.
T Consensus       245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             hhHHhhccccCCccc-ccccccccccccchhhhhccc
Confidence            344555555555544 333  2334444554444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.05  E-value=0.00029  Score=61.38  Aligned_cols=104  Identities=16%  Similarity=0.210  Sum_probs=63.4

Q ss_pred             CcEEEEEecCCCceee-CCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCc-ccchhccCCccCCE
Q 042065           71 NKVLNLRLTDMGLKGQ-FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~  148 (179)
                      +.+++|.+.+..+... +..-..++++|..||+++.+++ .+ ..+.+ +++|+.|.+.+=.+.. ..-..+.++++|++
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~-LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISR-LKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhc-cccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            5677777777655321 2233456677888888887776 44 55666 7777777666555541 11124566888888


Q ss_pred             eecccccCcccCc-------hhhcCCCCCCeEeccCC
Q 042065          149 LKLDHNRFSGQIP-------PQLGQLGRLKSFSVANN  178 (179)
Q Consensus       149 L~l~~n~l~g~~p-------~~~~~l~~L~~L~l~~N  178 (179)
                      ||+|+.... ..+       +....+|.|+.||.++.
T Consensus       225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             eeccccccc-cchHHHHHHHHhcccCccccEEecCCc
Confidence            888876544 222       11234678888887764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.03  E-value=0.00065  Score=59.23  Aligned_cols=105  Identities=19%  Similarity=0.276  Sum_probs=50.6

Q ss_pred             CcEEEEEecCCCcee-eCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           71 NKVLNLRLTDMGLKG-QFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~-~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      .++++|+++|...-. ..|..++ .+|+|+.|.+.+-.+...--..+...+++|..||+++.+++ .+ ..+..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            345666665543211 1111122 35666666666655432111122222566666666666665 33 44556666666


Q ss_pred             eecccccCcc-cCchhhcCCCCCCeEeccC
Q 042065          149 LKLDHNRFSG-QIPPQLGQLGRLKSFSVAN  177 (179)
Q Consensus       149 L~l~~n~l~g-~~p~~~~~l~~L~~L~l~~  177 (179)
                      |.+.+=.|.. ..=..+..+++|++||+|.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            6555444431 1113455566666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.02  E-value=0.00028  Score=53.64  Aligned_cols=100  Identities=23%  Similarity=0.216  Sum_probs=66.2

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccC--CCCCCChhHHHhcccCccEEEcccCcCCcccchhc---cCCcc
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSN--KLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL---ANCSY  145 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n--~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~---~~l~~  145 (179)
                      ..++.+.+.+.+++. + ..+..++.|+.|.++.|  ++.+.++.-... +++|++++++.|.+. . +..+   ..+.+
T Consensus        43 ~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~-~-lstl~pl~~l~n  117 (260)
T KOG2739|consen   43 VELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIK-D-LSTLRPLKELEN  117 (260)
T ss_pred             cchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccc-c-ccccchhhhhcc
Confidence            446666666666552 1 23556788999999999  666666666666 799999999999987 2 3433   44556


Q ss_pred             CCEeecccccCcccC-c--hhhcCCCCCCeEec
Q 042065          146 LNSLKLDHNRFSGQI-P--PQLGQLGRLKSFSV  175 (179)
Q Consensus       146 L~~L~l~~n~l~g~~-p--~~~~~l~~L~~L~l  175 (179)
                      |..|++..+..+..- +  ..|..+++|++||-
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            777788777665311 1  22456677777753

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.97  E-value=0.0023  Score=52.29  Aligned_cols=59  Identities=19%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccC-cCCcccch
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN-NFSGSIPT  138 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n-~l~g~~p~  138 (179)
                      .++.|++++|.++ .+|. +  .++|+.|.++++.--..+|..+   .++|+.|++.+| .+. .+|.
T Consensus        53 ~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc
Confidence            4567777777655 3441 1  2356777776533222555443   235666666666 333 4443

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.77  E-value=0.0033  Score=51.42  Aligned_cols=34  Identities=12%  Similarity=0.224  Sum_probs=19.8

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccC
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSN  105 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n  105 (179)
                      ...|++|.++++.-...+|..+  .++|+.|++++|
T Consensus        71 P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         71 PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3457777777644333445433  246677777766

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.74  E-value=0.0019  Score=47.68  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=59.3

Q ss_pred             CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccC-CccCCEeecccccCcccCc--hhhcCCCCCC
Q 042065           95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN-CSYLNSLKLDHNRFSGQIP--PQLGQLGRLK  171 (179)
Q Consensus        95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~-l~~L~~L~l~~n~l~g~~p--~~~~~l~~L~  171 (179)
                      .....+||++|.+. .++ .+.. +++|.+|.+.+|+++ .+.+.+.. +++|..|.+.+|.+. .+-  ..+..+++|+
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~-l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPH-LPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE  116 (233)
T ss_pred             cccceecccccchh-hcc-cCCC-ccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence            45678899999885 332 3444 789999999999999 55555554 578999999999886 332  2356788999


Q ss_pred             eEeccCC
Q 042065          172 SFSVANN  178 (179)
Q Consensus       172 ~L~l~~N  178 (179)
                      +|.+-+|
T Consensus       117 ~Ltll~N  123 (233)
T KOG1644|consen  117 YLTLLGN  123 (233)
T ss_pred             eeeecCC
Confidence            9988776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.71  E-value=0.00039  Score=54.95  Aligned_cols=108  Identities=19%  Similarity=0.316  Sum_probs=67.3

Q ss_pred             CcEEEEEecCCCceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcccc----h
Q 042065           71 NKVLNLRLTDMGLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGSIP----T  138 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~~p----~  138 (179)
                      +.+..+.+..|++...    +...|..+++|++|||..|.|+-.    +-..+.. +++|++|++++|.+...-.    .
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecccccccccccHHHHHH
Confidence            3566777777765421    123456778888888888888622    2223334 6678888888887763211    1


Q ss_pred             hc-cCCccCCEeecccccCccc----CchhhcCCCCCCeEeccCCC
Q 042065          139 NL-ANCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       139 ~~-~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N~  179 (179)
                      .+ ...++|+.+.+.+|.++..    +-..+...+.|..|++++|+
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            12 2357888888888888622    22334556778888888774

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.61  E-value=0.0014  Score=49.88  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             ccCccEEEcccC--cCCcccchhccCCccCCEeecccccCc
Q 042065          119 VGFLTGLDLSSN--NFSGSIPTNLANCSYLNSLKLDHNRFS  157 (179)
Q Consensus       119 l~~L~~L~L~~n--~l~g~~p~~~~~l~~L~~L~l~~n~l~  157 (179)
                      +++|+.|.++.|  +.++.++.....+++|+++++++|++.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            455555555555  444444443444455566666655554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.47  E-value=0.0018  Score=51.32  Aligned_cols=60  Identities=22%  Similarity=0.373  Sum_probs=35.1

Q ss_pred             ccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCccc----CchhhcCCCCCCeEeccCC
Q 042065          119 VGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       119 l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N  178 (179)
                      .+.|+.+.+..|.+.-    .+-..+..++.|+.|++..|-|+-.    +...+..++.|+.|++++|
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            4455555555555431    1123456677777788877777521    2344556677777777765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.00029  Score=54.43  Aligned_cols=98  Identities=29%  Similarity=0.304  Sum_probs=56.6

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch--hccCCccCCE
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT--NLANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L~~  148 (179)
                      ..|..|++-|+++.. +. ....++.|++|.|+-|.++ .+- .+.. +++|++|+|..|.+. .+.+  -+.++++|+.
T Consensus        19 ~~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIs-sL~-pl~r-CtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKIS-SLA-PLQR-CTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHhhhhcccCCCccH-HH-HHHhcccceeEEeeccccc-cch-hHHH-HHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            345556666666542 11 2345667777777777776 332 2334 667777777777766 3432  2456777777


Q ss_pred             eecccccCcccCchh-----hcCCCCCCeEe
Q 042065          149 LKLDHNRFSGQIPPQ-----LGQLGRLKSFS  174 (179)
Q Consensus       149 L~l~~n~l~g~~p~~-----~~~l~~L~~L~  174 (179)
                      |.|..|...|.-+..     +..+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            777777776554432     33455555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.38  E-value=0.0017  Score=30.26  Aligned_cols=11  Identities=55%  Similarity=0.676  Sum_probs=4.5

Q ss_pred             cEEEcccCcCC
Q 042065          123 TGLDLSSNNFS  133 (179)
Q Consensus       123 ~~L~L~~n~l~  133 (179)
                      ++|++++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.29  E-value=0.0019  Score=30.11  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=18.4

Q ss_pred             cCCEeecccccCcccCchhhcCC
Q 042065          145 YLNSLKLDHNRFSGQIPPQLGQL  167 (179)
Q Consensus       145 ~L~~L~l~~n~l~g~~p~~~~~l  167 (179)
                      +|++|++++|+++ .+|..|+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            5899999999999 899887653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.00073  Score=52.73  Aligned_cols=14  Identities=43%  Similarity=0.586  Sum_probs=5.6

Q ss_pred             CCCCcEEEcccCCC
Q 042065           94 CSSMTGLDLSSNKL  107 (179)
Q Consensus        94 l~~L~~L~L~~n~l  107 (179)
                      ++.|+.|+++.|++
T Consensus        96 lP~l~~LNls~N~L  109 (418)
T KOG2982|consen   96 LPALTTLNLSCNSL  109 (418)
T ss_pred             CccceEeeccCCcC
Confidence            33344444444433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.0013  Score=51.37  Aligned_cols=11  Identities=36%  Similarity=0.652  Sum_probs=4.6

Q ss_pred             CccCCEeeccc
Q 042065          143 CSYLNSLKLDH  153 (179)
Q Consensus       143 l~~L~~L~l~~  153 (179)
                      +++|.+|+|++
T Consensus       312 cp~l~~LDLSD  322 (419)
T KOG2120|consen  312 CPNLVHLDLSD  322 (419)
T ss_pred             CCceeeecccc
Confidence            33444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.75  E-value=0.0003  Score=53.06  Aligned_cols=84  Identities=20%  Similarity=0.196  Sum_probs=71.7

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..+++.||++.|.+. ..-..|..++.+..||++.|.+. .+|..+.+ ...++.+++..|.++ ..|.+++..+.++.+
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            568999999998876 44556777888999999999997 89999988 788888888888888 789999999999999


Q ss_pred             ecccccCc
Q 042065          150 KLDHNRFS  157 (179)
Q Consensus       150 ~l~~n~l~  157 (179)
                      ++-.|.|.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99988876

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.61  E-value=0.00036  Score=52.61  Aligned_cols=85  Identities=27%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCC
Q 042065           90 GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGR  169 (179)
Q Consensus        90 ~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~  169 (179)
                      ++..+...+.||++.|++. .+-..+.. +..++.|+++.|.+. .+|..++....+.++++..|..+ ..|.+++..+.
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~-~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSI-LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHH-HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            4566788999999999876 44445555 778999999999998 88999999999999999999988 89999999999


Q ss_pred             CCeEeccCC
Q 042065          170 LKSFSVANN  178 (179)
Q Consensus       170 L~~L~l~~N  178 (179)
                      ++++++-+|
T Consensus       113 ~k~~e~k~~  121 (326)
T KOG0473|consen  113 PKKNEQKKT  121 (326)
T ss_pred             cchhhhccC
Confidence            988887654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.21  E-value=0.0017  Score=50.28  Aligned_cols=79  Identities=25%  Similarity=0.341  Sum_probs=61.6

Q ss_pred             CCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCch--hhcCCCCCC
Q 042065           94 CSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPP--QLGQLGRLK  171 (179)
Q Consensus        94 l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~  171 (179)
                      +...+.|++=++.++ .|  ++...|+.|++|.|+-|.++ .+ ..+..|++|+.|.|..|.|. .+-+  .+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence            456778888888887 44  34444999999999999999 44 34778999999999999997 4432  356889999


Q ss_pred             eEeccCC
Q 042065          172 SFSVANN  178 (179)
Q Consensus       172 ~L~l~~N  178 (179)
                      .|.|..|
T Consensus        92 ~LWL~EN   98 (388)
T KOG2123|consen   92 TLWLDEN   98 (388)
T ss_pred             hHhhccC
Confidence            9888766

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.19  E-value=0.086  Score=35.43  Aligned_cols=98  Identities=17%  Similarity=0.364  Sum_probs=45.5

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      +++.+.+.. .+...-...|.+++.|+.+++..+ +. .++...+..++.++.+.+.. .+...-...+..+++++.+.+
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            466677664 444344556777777888887764 54 55554444355677777765 333122234556777777777


Q ss_pred             ccccCcccCc-hhhcCCCCCCeEecc
Q 042065          152 DHNRFSGQIP-PQLGQLGRLKSFSVA  176 (179)
Q Consensus       152 ~~n~l~g~~p-~~~~~l~~L~~L~l~  176 (179)
                      ..+ +. .++ ..+... .|+.+.+.
T Consensus        89 ~~~-~~-~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   89 PSN-IT-EIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTT--B-EEHTTTTTT--T--EEE-T
T ss_pred             Ccc-cc-EEchhhhcCC-CceEEEEC
Confidence            654 33 232 234443 56655554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.13  E-value=0.013  Score=25.37  Aligned_cols=13  Identities=46%  Similarity=0.687  Sum_probs=4.7

Q ss_pred             CCcEEEcccCCCC
Q 042065           96 SMTGLDLSSNKLY  108 (179)
Q Consensus        96 ~L~~L~L~~n~l~  108 (179)
                      +|+.|++++|.++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444555554443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.73  E-value=0.032  Score=26.82  Aligned_cols=20  Identities=45%  Similarity=0.645  Sum_probs=11.7

Q ss_pred             CCCcEEEcccCCCCCCChhHH
Q 042065           95 SSMTGLDLSSNKLYGSLPDDI  115 (179)
Q Consensus        95 ~~L~~L~L~~n~l~g~~p~~~  115 (179)
                      ++|+.|+|++|.+. .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            45666666666665 555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.73  E-value=0.032  Score=26.82  Aligned_cols=20  Identities=45%  Similarity=0.645  Sum_probs=11.7

Q ss_pred             CCCcEEEcccCCCCCCChhHH
Q 042065           95 SSMTGLDLSSNKLYGSLPDDI  115 (179)
Q Consensus        95 ~~L~~L~L~~n~l~g~~p~~~  115 (179)
                      ++|+.|+|++|.+. .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            45666666666665 555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=0.002  Score=50.36  Aligned_cols=58  Identities=22%  Similarity=0.337  Sum_probs=25.5

Q ss_pred             CcEEEEEecCCCceee-CCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEccc
Q 042065           71 NKVLNLRLTDMGLKGQ-FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSS  129 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~  129 (179)
                      ++++.|||+...++.. +..-+..+..|+.|.+-++.+...+-..+.. -..|+.++|+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm  243 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSM  243 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeecccc
Confidence            3456666665554411 1122233444444455555444444444443 33444444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.039  Score=43.41  Aligned_cols=76  Identities=14%  Similarity=0.084  Sum_probs=55.0

Q ss_pred             CcccceeeecCCCCCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcC
Q 042065           57 ICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNF  132 (179)
Q Consensus        57 ~c~w~gv~c~~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l  132 (179)
                      ...|..+.|.-...++++.|+++.|.+...+...-..+.+|+.|-|.+..+......++...+|.+++|-++.|++
T Consensus        83 iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   83 ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            4578888887666789999999999987544332245678889999888887666555544477777777777643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.27  E-value=0.034  Score=43.23  Aligned_cols=106  Identities=22%  Similarity=0.346  Sum_probs=69.3

Q ss_pred             CcEEEEEecCCCceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHH-------HhcccCccEEEcccCcCCcc
Q 042065           71 NKVLNLRLTDMGLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDI-------SKLVGFLTGLDLSSNNFSGS  135 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~-------~~~l~~L~~L~L~~n~l~g~  135 (179)
                      ..++.++|+||-+...    +...+.+-.+|+..+++.-. +|.    +|+++       .. +|+|+..+|+.|.+.-.
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg~~  107 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccCcc
Confidence            4578889999877532    34455666778888877643 333    33332       23 68899999999988866


Q ss_pred             cchh----ccCCccCCEeecccccCcccCch-hhc-------------CCCCCCeEeccCCC
Q 042065          136 IPTN----LANCSYLNSLKLDHNRFSGQIPP-QLG-------------QLGRLKSFSVANNL  179 (179)
Q Consensus       136 ~p~~----~~~l~~L~~L~l~~n~l~g~~p~-~~~-------------~l~~L~~L~l~~N~  179 (179)
                      .|+.    +..-+.|.+|.+++|.+. ++.. -++             +-|.|+.++.+.|+
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            6654    445577889999888775 3321 121             34677777777774

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.17  E-value=0.16  Score=39.63  Aligned_cols=13  Identities=15%  Similarity=0.230  Sum_probs=6.7

Q ss_pred             CCCCCCeEeccCC
Q 042065          166 QLGRLKSFSVANN  178 (179)
Q Consensus       166 ~l~~L~~L~l~~N  178 (179)
                      .+.+|+.||+..|
T Consensus       212 y~~~LevLDlqDN  224 (388)
T COG5238         212 YSHSLEVLDLQDN  224 (388)
T ss_pred             HhCcceeeecccc
Confidence            3455555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.35  E-value=0.083  Score=25.29  Aligned_cols=19  Identities=37%  Similarity=0.709  Sum_probs=10.4

Q ss_pred             ccCCEeecccccCcccCchh
Q 042065          144 SYLNSLKLDHNRFSGQIPPQ  163 (179)
Q Consensus       144 ~~L~~L~l~~n~l~g~~p~~  163 (179)
                      ++|+.|++++|+++ .+|+.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45555666666555 44443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.35  E-value=0.083  Score=25.29  Aligned_cols=19  Identities=37%  Similarity=0.709  Sum_probs=10.4

Q ss_pred             ccCCEeecccccCcccCchh
Q 042065          144 SYLNSLKLDHNRFSGQIPPQ  163 (179)
Q Consensus       144 ~~L~~L~l~~n~l~g~~p~~  163 (179)
                      ++|+.|++++|+++ .+|+.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45555666666555 44443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.47  E-value=0.29  Score=32.82  Aligned_cols=93  Identities=16%  Similarity=0.293  Sum_probs=47.3

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      +++.+.+.++ +...-...|.+++.|+.+.+.. .+. .++...+..++.|+.+++..+ +...-...+.++ .++.+.+
T Consensus        36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~  110 (129)
T PF13306_consen   36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI  110 (129)
T ss_dssp             T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred             cccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence            5788888774 5544456788888899999976 444 455554443788999999765 552233456666 8888888


Q ss_pred             ccccCcccCchhhcCCCCC
Q 042065          152 DHNRFSGQIPPQLGQLGRL  170 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L  170 (179)
                      .. .+...-...|.++++|
T Consensus       111 ~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  111 PS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TT-B-SS----GGG-----
T ss_pred             CC-CccEECCccccccccC
Confidence            75 3331223445565555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.50  E-value=0.041  Score=40.73  Aligned_cols=82  Identities=21%  Similarity=0.203  Sum_probs=54.5

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCC-CChhHHHhcccCccEEEcccCc-CCcccchhccCCccCCEe
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG-SLPDDISKLVGFLTGLDLSSNN-FSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g-~~p~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~L  149 (179)
                      .|+.++-++..+..+--..+.+++.++.|.+.++.--+ ..-+.+.+..++|+.|++++|. ++..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            58888888888775545567777788888887774321 2223344457889999999775 443223456677788877


Q ss_pred             eccc
Q 042065          150 KLDH  153 (179)
Q Consensus       150 ~l~~  153 (179)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.76  E-value=0.11  Score=24.33  Aligned_cols=13  Identities=38%  Similarity=0.629  Sum_probs=5.2

Q ss_pred             CCcEEEcccCCCC
Q 042065           96 SMTGLDLSSNKLY  108 (179)
Q Consensus        96 ~L~~L~L~~n~l~  108 (179)
                      +|+.|++++|.++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444555544443

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.91  E-value=0.69  Score=22.38  Aligned_cols=16  Identities=50%  Similarity=0.762  Sum_probs=8.0

Q ss_pred             CCcEEEcccCCCCCCCh
Q 042065           96 SMTGLDLSSNKLYGSLP  112 (179)
Q Consensus        96 ~L~~L~L~~n~l~g~~p  112 (179)
                      +|+.|+.++|+++ .+|
T Consensus         3 ~L~~L~vs~N~Lt-~LP   18 (26)
T smart00364        3 SLKELNVSNNQLT-SLP   18 (26)
T ss_pred             ccceeecCCCccc-cCc
Confidence            3455555555554 444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-11
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-06

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 24/137 (17%)
Query: 65  CWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKL------ 118
           C +P +N +  L L + G  G+ P  + NCS +  L LS N L G++P  +  L      
Sbjct: 389 CQNP-KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 119 -----------------VGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIP 161
                            V  L  L L  N+ +G IP+ L+NC+ LN + L +NR +G+IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 162 PQLGQLGRLKSFSVANN 178
             +G+L  L    ++NN
Sbjct: 508 KWIGRLENLAILKLSNN 524

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 24/137 (17%)
Query: 65  CWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKL------ 118
           C +P +N +  L L + G  G+ P  + NCS +  L LS N L G++P  +  L      
Sbjct: 386 CQNP-KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 119 -----------------VGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIP 161
                            V  L  L L  N+ +G IP+ L+NC+ LN + L +NR +G+IP
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 162 PQLGQLGRLKSFSVANN 178
             +G+L  L    ++NN
Sbjct: 505 KWIGRLENLAILKLSNN 521

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
           L G  P  I   + +  L ++   + G++PD +S++   +T LD S N  SG++P ++++
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT-LDFSYNALSGTLPPSISS 147
Query: 143 CSYLNSLKLDHNRFSGQIPPQLGQLGRL-KSFSVANN 178
              L  +  D NR SG IP   G   +L  S +++ N
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (272), Expect = 3e-29
 Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 9/159 (5%)

Query: 24  EDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVEC-WHPDENKVLNLRLTDMG 82
           +D   L  IK  L +P     SSW    D       + GV C       +V NL L+ + 
Sbjct: 6   QDKQALLQIKKDLGNP--TTLSSWLPTTDCCN--RTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 83  LKGQF--PRGIRNCSSMTGLDLSS-NKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN 139
           L   +  P  + N   +  L +   N L G +P  I+KL   L  L ++  N SG+IP  
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDF 120

Query: 140 LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L+    L +L   +N  SG +PP +  L  L   +   N
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.0 bits (232), Expect = 2e-23
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
           L G  P  I +  ++ G+    N++ G++PD         T + +S N  +G IP   AN
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 143 CSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            + L  + L  N   G      G     +   +A N
Sbjct: 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.9 bits (224), Expect = 3e-22
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 74  LNLRLTDMG---LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130
           LNL   D+    L+G       +  +   + L+ N L   L   +      L GLDL +N
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN-LNGLDLRNN 254

Query: 131 NFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              G++P  L    +L+SL +  N   G+I PQ G L R    + ANN
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (263), Expect = 8e-27
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
             +T     G       N  SM  LD+S N L G +P +I  +   L  L+L  N+ SGS
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGS 671

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           IP  + +   LN L L  N+  G+IP  +  L  L    ++NN
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.8 bits (247), Expect = 1e-24
 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
             G+ P  + NCS +  L LS N L G++P  +  L   L  L L  N   G IP  L  
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMY 464

Query: 143 CSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              L +L LD N  +G+IP  L     L   S++NN
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.1 bits (245), Expect = 2e-24
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
           K  +     +  +G     +   S+    +++S    G          G +  LD+S N 
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNM 643

Query: 132 FSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            SG IP  + +  YL  L L HN  SG IP ++G L  L    +++N
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 7e-24
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
           L G  P  + + S +  L L  N L G +P ++  +   L  L L  N+ +G IP+ L+N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGLSN 488

Query: 143 CSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           C+ LN + L +NR +G+IP  +G+L  L    ++NN
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 2e-23
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
           L+G+ P+ +    ++  L L  N L G +P  +S     L  + LS+N  +G IP  +  
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGR 512

Query: 143 CSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              L  LKL +N FSG IP +LG    L    +  N
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 2e-23
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
           L G+ P G+ NC+++  + LS+N+L G +P  I +L   L  L LS+N+FSG+IP  L +
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGD 536

Query: 143 CSYLNSLKLDHNRFSGQIPPQLGQL 167
           C  L  L L+ N F+G IP  + + 
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQ 561

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.5 bits (228), Expect = 4e-22
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 83  LKGQFPRGIRNCS-SMTGLDLSSNKLYGSLPDDISKLV-GFLTGLDLSSNNFSGSIPTNL 140
             G+ P  + N S S+  LDLSSN   G +  ++ +     L  L L +N F+G IP  L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 141 ANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +NCS L SL L  N  SG IP  LG L +L+   +  N
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.0 bits (224), Expect = 1e-21
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           +L ++   L G F R I  C+ +  L++SSN+  G +P    K    L  L L+ N F+G
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTG 283

Query: 135 SIPTNLA-NCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            IP  L+  C  L  L L  N F G +PP  G    L+S ++++N
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 17/164 (10%)

Query: 21  GTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTD 80
               +I  L S KD L D  N L   W+ N +     C F GV C    ++KV ++ L+ 
Sbjct: 9   SLYREIHQLISFKDVLPDK-NLL-PDWSSNKN----PCTFDGVTC---RDDKVTSIDLSS 59

Query: 81  MGLK---GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP 137
             L          + + + +  L LS++ + GS+          LT LDLS N+ SG + 
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCS-ASLTSLDLSRNSLSGPVT 117

Query: 138 T--NLANCSYLNSLKLDHNRFSGQIP-PQLGQLGRLKSFSVANN 178
           T  +L +CS L  L +  N            +L  L+   ++ N
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.2 bits (222), Expect = 2e-21
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L ++     G  P       S+  L L+ NK  G +PD +S     LTGLDLS N+F G+
Sbjct: 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           +P    +CS L SL L  N FSG++P   L ++  LK   ++ N
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 4e-21
 Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 76  LRLTDMGLKGQFPRG-IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           L L+     G+ P   +     +  LDLS N+  G LP+ ++ L   L  LDLSSNNFSG
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 135 SIPTNLANC--SYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            I  NL     + L  L L +N F+G+IPP L     L S  ++ N
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 2e-20
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
           L G  P+ I +   +  L+L  N + GS+PD++  L G L  LDLSSN   G IP  ++ 
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG-LNILDLSSNKLDGRIPQAMSA 702

Query: 143 CSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            + L  + L +N  SG I P++GQ          NN
Sbjct: 703 LTMLTEIDLSNNNLSGPI-PEMGQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L ++   + G     +  C ++  LD+SSN     +P  +      L  LD+S N  SG 
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGD 238

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
               ++ C+ L  L +  N+F G IPP    L  L+  S+A N
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 7e-19
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           + L++  L G+ P+ I    ++  L LS+N   G++P ++      L  LDL++N F+G+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGT 553

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           IP  +   S     K+  N  +G+    +   G  K    A NL
Sbjct: 554 IPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 1e-16
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 76  LRLTDMGLKGQFP--RGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFS 133
           L L+   L G       + +CS +  L++SSN L           +  L  LDLS+N+ S
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 134 GSIPTNLA---NCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           G+          C  L  L +  N+ SG +   + +   L+   V++N
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN 210

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
             G  P  + +C S+  LDL++N   G++P  + K         +++N  +G     + N
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-----GKIAANFIAGKRYVYIKN 580

Query: 143 CSYLNSLKLDHN--RFSGQIPPQLGQLGRLKSFSVANN 178
                      N   F G    QL +L      ++ + 
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 4e-15
 Identities = 25/103 (24%), Positives = 37/103 (35%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L ++    +  F       SS+  L ++ N    +   DI   +  LT LDLS       
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            PT   + S L  L + HN F          L  L+    + N
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           NL L+   L+        +   +  LDLS  ++          L   L+ L L+ N    
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQS 90

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
                 +  S L  L       +      +G L  LK  +VA+N
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 76  LRLTDMGLKGQFPRGI-RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           L++     +  F   I     ++T LDLS  +L    P   + L   L  L++S NNF  
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFS 508

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGR-LKSFSVANN 178
                    + L  L    N        +L      L   ++  N
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 1/93 (1%)

Query: 87  FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYL 146
                     +  LD   + L       +   +  L  LD+S  +   +        S L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 147 NSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
             LK+  N F     P    +L  L    ++  
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L L+   ++       ++ S ++ L L+ N +        S L   L  L     N +  
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASL 115

Query: 136 IPTNLANCSYLNSLKLDHNRF-SGQIPPQLGQLGRLKSFSVANN 178
               + +   L  L + HN   S ++P     L  L+   +++N
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 2/105 (1%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNF-SG 134
           L LT   ++          SS+  L      L       I  L   L  L+++ N   S 
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSF 139

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            +P   +N + L  L L  N+        L  L ++   +++ +L
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHN 154
            S   LDLS N L              L  LDLS             + S+L++L L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 155 RFSGQIPPQLGQLGRLKSFSVANN 178
                       L  L+       
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVET 110

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
           + L+L    +  KG   +     +S+  LDLS N +   +  +   L   L  LD   +N
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ-LEHLDFQHSN 407

Query: 132 FSGSIPTN-LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
                  +   +   L  L + H             L  L+   +A N
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKL-YGSLPDDISKLVGFLTGLDLSSNNFSG 134
           L   +  L       I +  ++  L+++ N +    LP+  S L   L  LDLSSN    
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQS 163

Query: 135 SIPTNLANCSYL----NSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
              T+L     +     SL L  N  +  I P   +  RL   ++ NN 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNF 211

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 4/78 (5%)

Query: 101 DLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQI 160
                  Y  +PD++         LDLS N        +  +   L  L L         
Sbjct: 13  QCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 161 PPQLGQLGRLKSFSVANN 178
                 L  L +  +  N
Sbjct: 69  DGAYQSLSHLSTLILTGN 86

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 5/107 (4%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY--GSLPDDISKLVGFLTGLDLSSNNF 132
             RLT    KG       +  S+  LDLS N L   G            L  LDLS N  
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGV 385

Query: 133 SGSIPTNLANCSYLNSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
              + +N      L  L   H+             L  L    +++ 
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 85  GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVG---FLTGLDLSSNNFSGSIPTNLA 141
            + P    N +++  LDLSSNK+      D+  L         LDLS N  +   P    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 142 NCSYLNSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
               L+ L L +N  S  +    +  L  L+   +   
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 83  LKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN--L 140
                    +  +S+  LD S N +  S   ++      L  L+L+ N+F+ +      L
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 565

Query: 141 ANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFS 174
                   L ++  R     P     +  + S +
Sbjct: 566 QWIKDQRQLLVEVERMECATPSDKQGM-PVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 26/166 (15%), Positives = 40/166 (24%), Gaps = 30/166 (18%)

Query: 35  SLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLK-GQFPRGIRN 93
            LE     L    N  N  +       G+         +   RL  +             
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLC-----NLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 94  CSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN------ 147
            ++++   L S  +      D S   G    L+L +  F       L +   L       
Sbjct: 281 LTNVSSFSLVSVTI--ERVKDFSYNFG-WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 148 -------------SLKLDHNR--FSGQIPPQLGQLGRLKSFSVANN 178
                         L L  N   F G           LK   ++ N
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 9/102 (8%)

Query: 86  QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS------IPTN 139
               G      +  L L +N    ++     + +  L    L    F           + 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 140 LANCSYLNSLKLDHNR---FSGQIPPQLGQLGRLKSFSVANN 178
           L     L   +        +   I      L  + SFS+ + 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG--SLPDDISKLVGF-----LTGLDL 127
           ++ + +     + P  ++    M  ++++ N+      L DD   L        +  + +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 128 SSNNF-SGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             NN  +  + T+L     L  L+  +N+  G   P  G   +L S ++A N
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 15/162 (9%)

Query: 29  LKSIKDSLEDPFNYLN-------SSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDM 81
           LK I D+L               ++WNFN + + +     GV        +V  L L   
Sbjct: 35  LKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMW-GAQPGVSLN--SNGRVTGLSLEGF 91

Query: 82  GLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGL---DLSSNNFSGSIPT 138
           G  G+ P  I   + +  L L S+    +      K +              ++  +   
Sbjct: 92  GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151

Query: 139 NLANCSYLN--SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
                 + +     ++ +     I        +       +N
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 8e-13
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 90  GIRNCSSMTGLDLSSNKLYG-------SLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN 142
             ++ S M+ +D S N++          L     K +  ++ ++LS+N  S       + 
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFST 455

Query: 143 CSYLNSLKLDHNRFSG-------QIPPQLGQLGRLKSFSVANN 178
            S L+S+ L  N  +                   L S  +  N
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKL-------YGSLPDDISKLVGFLTGLDLS 128
           + L++  +           S ++ ++L  N L            ++       LT +DL 
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY-LLTSIDLR 496

Query: 129 SNNFSGSIPTNLA--NCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            N  +  +  +       YL  + L +N FS   P Q      LK F + N  
Sbjct: 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 9/107 (8%), Positives = 31/107 (28%), Gaps = 7/107 (6%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
           K   +      +     + +   + +    + ++        +  +        +     
Sbjct: 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN------ENSEYAQ 236

Query: 132 FSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              +      N   L  +++ +     ++P  L  L  ++  +VA N
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
            +   D               +++ ++LS+N++     +  S     L+ ++L  N  + 
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLTE 471

Query: 135 -------SIPTNLANCSYLNSLKLDHNRFSGQIPP--QLGQLGRLKSFSVANN 178
                      N  N   L S+ L  N+ +  +    +   L  L    ++ N
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 7e-12
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 85  GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCS 144
                 ++    +  L+   N+L G         +  L  L+L+ N  +           
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIK-LASLNLAYNQITEIPANFCGFTE 377

Query: 145 YLNSLKLDHNRFSGQIPP--QLGQLGRLKSFSVANN 178
            + +L   HN+    IP       +  + +   + N
Sbjct: 378 QVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYN 412

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 7e-12
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 9/94 (9%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF-----LTGLDLSSNNFSGSIPTNLANCS 144
                  + G+DLS N      P                  D   N      P  +  C 
Sbjct: 508 RATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 145 YLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L  L++  N     +  ++     +    + +N
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 12/100 (12%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 87  FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSY 145
                 +   +  L+L+ N++   +P +       +  L  + N         +  + S 
Sbjct: 345 KLPAFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 146 LNSLKLDHNRFSG-------QIPPQLGQLGRLKSFSVANN 178
           ++++   +N            + P   +   + S +++NN
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 11/108 (10%), Positives = 32/108 (29%), Gaps = 4/108 (3%)

Query: 74  LNLRLTDMGLKGQFPRGI--RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
              +   M  +  F       + S +    ++S+    S+       +   T +   SNN
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-DTQIGQLSNN 194

Query: 132 FSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            +  +   +   + L    + ++ F  +   +  +    +        
Sbjct: 195 IT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 86  QFPRGIRNCSSMTGL------DLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN 139
           +FP    N S++ G       D   N+     P+ I+     LT L + SN+    +   
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS-LTQLQIGSNDIR-KVNEK 584

Query: 140 LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +     ++ L +  N         +        + +  +
Sbjct: 585 I--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
                      ++P GI  C S+T L + SN +   + + I+     ++ LD+  N    
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPN---ISVLDIKDNPNIS 601

Query: 135 SIPTNLANCSYLNSLKLDHNR 155
              + +          L +++
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDK 622

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 3e-14
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 85  GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDI--SKLVGFLTGLDLSSNNFSGSIPTNLAN 142
                  +N   +T +DL  NKL  SL DD   + L   L+ +D+S N FS S PT   N
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPY-LSNMDVSYNCFS-SFPTQPLN 774

Query: 143 CSYLNSLKLDH------NRFSGQIPPQLGQLGRLKSFSVANN 178
            S L +  + H      NR   Q P  +     L    + +N
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 9e-13
 Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 11/121 (9%)

Query: 68  PDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDL 127
                  +                 N   +T ++L +      LPD +  L   L  L++
Sbjct: 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE-LQSLNI 522

Query: 128 SSNNFSG---------SIPTNLANCSYLNSLKLDHNRFSG-QIPPQLGQLGRLKSFSVAN 177
           + N              +  +      +    + +N          L ++ +L      +
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 178 N 178
           N
Sbjct: 583 N 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 29/119 (24%)

Query: 88  PRGIRNCSSMTGLDLSSNKL-------------------YGSLPDDISKLVGFLTGLDLS 128
            + I+  + +  +  +++                     Y +     S L   LT ++L 
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD-LTDVELY 499

Query: 129 SNNFSGSIPTNLANCSYLNSLKLDHNRFSG---------QIPPQLGQLGRLKSFSVANN 178
           +      +P  L +   L SL +  NR            ++        +++ F +  N
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 8e-12
 Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 13/113 (11%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG---------SLPDDISKLVGFLTGLD 126
           + L +     Q P  + +   +  L+++ N+             L DD       +    
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-IQIFY 554

Query: 127 LSSNNFSG-SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +  NN        +L     L  L   HN+         G   +L    +  N
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 12/113 (10%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKL-------YGSLPDDISKLVGFLTGLDLS 128
           + L+   ++          S ++ + LS+N +             +       LT +DL 
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL-LTTIDLR 736

Query: 129 SNNFSGSIPTNLA--NCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            N  + S+  +       YL+++ + +N FS   P Q     +LK+F + +  
Sbjct: 737 FNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 31/196 (15%), Positives = 57/196 (29%), Gaps = 41/196 (20%)

Query: 21  GTKEDIACLKSIKDSLEDPFNYLNS----------SWNFNNDTEGFICKFTGVECWHPDE 70
              +D   LK+I ++L+       S          +WNFN + +       GV+    + 
Sbjct: 266 EYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELD-MWGDQPGVDL--DNN 322

Query: 71  NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130
            +V  L L   G KG+ P  I   + +  L   ++    S      + +      +    
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 131 NFSGSIPTNLANCSYLNSLKLDHNRFSG----------------------------QIPP 162
                    L     LN   L  +  +                              I  
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 163 QLGQLGRLKSFSVANN 178
            + +L +L+    AN+
Sbjct: 443 AIQRLTKLQIIYFANS 458

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF-----LTGLDLSSNNFSGSIPTNLANCS 144
             ++   M  +D S NK+ GS   +IS  +        + + LS N          A  S
Sbjct: 639 NAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 145 YLNSLKLDHNRFS-------GQIPPQLGQLGRLKSFSVANN 178
            ++++ L +N  +                   L +  +  N
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 9/94 (9%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKL-----VGFLTGLDLSSNNFSGSIPTNLANCS 144
                  ++ +D+S N    S P            G     D   N      PT +  C 
Sbjct: 748 RATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 145 YLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L  L++  N     +  +L    +L    +A+N
Sbjct: 807 SLIQLQIGSNDIRK-VDEKL--TPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 14/119 (11%)

Query: 72  KVLNL---RLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLS 128
             ++    ++   G             + + + LS N++     +  +     ++ + LS
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS-PISTIILS 705

Query: 129 SNNFS-------GSIPTNLANCSYLNSLKLDHNRFSGQIPPQL--GQLGRLKSFSVANN 178
           +N  +            N  N   L ++ L  N+ +  +        L  L +  V+ N
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYN 763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 8e-09
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL-ANCSYL 146
              ++    +  LD   NK+     +     V  LT L L  N     IP +  A    +
Sbjct: 566 SASLQKMVKLGLLDCVHNKV--RHLEAFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQV 621

Query: 147 NSLKLDHNRFSGQIPP--QLGQLGRLKSFSVANN 178
             L   HN+    IP       +  + S   + N
Sbjct: 622 EGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYN 654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
                   +  Q+P GI  C S+  L + SN +   + + ++     L  LD++ N    
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQ---LYILDIADNPNIS 841

Query: 135 SIPTNLANCSYLNSLKLDHNR 155
              T++          L +++
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDK 862

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L LT   +             +  LDL  N++   L     + +  +  + LS N +   
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 136 IPTNLANCSYLNSLKLDHNRFSG--QIPPQLGQLGRLKSFSVANN 178
              + A    L  L L           P     L  L    ++NN
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 1/103 (0%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L +    +    P   +    +  L+L  N+L        +     LT L L SN+    
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN-LTELHLMSNSIQKI 112

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
                     L +L L HN  S        QL  L+   ++NN
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 72  KVLNL------RLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGL 125
           ++L+L      RL      G     ++  S +  L+L SN       +    L   L  +
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE-LKII 565

Query: 126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLG-QLGRLKSFSVANN 178
           DL  NN +    +   N   L SL L  N  +       G     L    +  N
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHN 154
           +++T L+L+ N+L      + ++    LT LD+  N  S   P        L  L L HN
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 155 RFSGQIPPQLGQLGRLKSFSVANN 178
             S            L    + +N
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSN 107

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF-LTGLDLSSNNFSG 134
           L L+  GL            ++  L LS+NK+     +++       L  L+LSSN    
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKS 172
             P        L  L L++ +    +  +L       S
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 76  LRLTDMGLKGQFPRGIR---NCSSMTGLDLSSNKLYGSLPDDISKLVGF-LTGLDLSSNN 131
           L L ++ L       +      +S+  L LS+++L  +       L    LT LDLS NN
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 132 FSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            +     + A    L    L++N         L  L  ++  ++  + 
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 3/105 (2%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L L    L     +    C+++T L L SN +     +   K    L  LDLS N  S +
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSST 136

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLG--RLKSFSVANN 178
                     L  L L +N+       +L       LK   +++N
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 9/111 (8%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKL--------YGSLPDDISKLVGFLTGLDL 127
           L L++  +       +     +  LDL  N L         G     +  L   L  L+L
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH-LHILNL 543

Query: 128 SSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            SN F         +   L  + L  N  +            LKS ++  N
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 100 LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ 159
            D S  KL   +PDD+      +T L+L+ N        N    S L SL +  N  S  
Sbjct: 9   ADCSHLKLT-QVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 160 IPPQLGQLGRLKSFSVANN 178
            P    +L  LK  ++ +N
Sbjct: 65  EPELCQKLPMLKVLNLQHN 83

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 17/112 (15%), Positives = 29/112 (25%), Gaps = 8/112 (7%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--------LTGLDL 127
           L L+   L             +    L  N +       +  L            T   +
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 128 SSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           S  +       +      L  L ++ N   G        L  LK  S++N+ 
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 27/113 (23%), Positives = 36/113 (31%), Gaps = 11/113 (9%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFS 133
           + L+                S+  L L    L    S P     L   LT LDLS+NN +
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN-LTILDLSNNNIA 493

Query: 134 GSIPTNLANCSYLNSLKLDHNRFS--------GQIPPQLGQLGRLKSFSVANN 178
                 L     L  L L HN  +        G     L  L  L   ++ +N
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKL-YGSLPDDISKLVGF--LTGLDLSSNNF 132
           L + D  + G          ++  L LS++     +L ++    +    L  L+L+ N  
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 133 SGSIPTNLANCSYLNSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           S       +   +L  L L  N    ++  Q    L  +    ++ N
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 5/112 (4%)

Query: 71  NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130
                  ++   L        +    +  L++  N + G   +  + L   L  L LS++
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNS 363

Query: 131 NFSGSIPTNLA----NCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             S    TN        S L+ L L  N+ S         LG L+   +  N
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPD-DISKLVGF-------LTGLDL 127
             L    ++  F   +    ++  L+L  +    S+    + K+  F       L  L++
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 128 SSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPP 162
             N+  G           L  L L ++  S +   
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/85 (17%), Positives = 26/85 (30%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           + L    L         N  S+  L+L  N +              LT LD+  N F  +
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQI 160
             +     +++N    +    S   
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHY 649

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 86  QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSY 145
                I +   +  LDL       + P         L  L L   +   ++P ++   + 
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP-LKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 146 LNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           L  L L       ++P  + QL       V  +L
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 70  ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSS 129
           +   + L L  + L  QFP      S +  + + +  L   LPD + +  G L  L L+ 
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAG-LETLTLAR 136

Query: 130 NNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           N    ++P ++A+ + L  L +       ++P  L             NL
Sbjct: 137 NPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 87  FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--------LTGLDLSSNNFSGSIPT 138
            P  I + + +  L + +      LP+ ++             L  L L       S+P 
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200

Query: 139 NLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           ++AN   L SLK+ ++  S  + P +  L +L+   +   
Sbjct: 201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 87  FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYL 146
           +P      + +  L L       +LP DI +L   L  LDL        +P+ +A     
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 147 NSLKLDHNRFSGQIPPQLGQLG 168
             + +  +  +     +     
Sbjct: 304 CIILVPPHLQAQLDQHRPVARP 325

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 20/103 (19%), Positives = 32/103 (31%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L ++    K  F       +S+  L ++ N    +   ++      LT LDLS       
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
                     L  L + HN           QL  L +   + N
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 1/93 (1%)

Query: 87  FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYL 146
                     +  LD   + L           +  L  LD+S  N            + L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 147 NSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           N+LK+  N F              L    ++  
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 2/104 (1%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L L+   ++    +       ++ L L+ N +    P   S L   L  L       +  
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS-LENLVAVETKLASL 119

Query: 136 IPTNLANCSYLNSLKLDHNRFSG-QIPPQLGQLGRLKSFSVANN 178
               +     L  L + HN     ++P     L  L    ++ N
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 76  LRLTDMGLKGQFPRGI-RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           L++     K      +  N +++T LDLS  +L          L   L  L++S NN   
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR-LQLLNMSHNNLLF 511

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              ++      L++L    NR              L  F++ NN
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN 147
                N S +  LDLS  ++          L   L+ L L+ N      P + +  + L 
Sbjct: 49  SYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +L     + +      +GQL  LK  +VA+N
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHN 138

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 5/94 (5%)

Query: 85  GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCS 144
           G     I    ++T       KL   +PDDI         +DLS N        + +N S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFSNFS 56

Query: 145 YLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L  L L               L  L +  +  N
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 1/84 (1%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHN 154
           SS   +DLS N L        S     L  LDLS                +L++L L  N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 155 RFSGQIPPQLGQLGRLKSFSVANN 178
                 P     L  L++      
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVET 114

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 2/106 (1%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           NL LT   ++   P      +S+  L     KL       I +L+  L  L+++ N    
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT-LKKLNVAHNFIHS 142

Query: 135 -SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
             +P   +N + L  + L +N         L  L      +++ ++
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L L+   L+            +  L++S N L        ++L   L+ LD S N    S
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS-LSTLDCSFNRIETS 536

Query: 136 IPTNLANCSYLNSLKLDHNRFS 157
                     L    L +N  +
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 72  KVLNL---RLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVG---FLTGL 125
           K LN+    +    L   F     N +++  +DLS N +     +D+  L         L
Sbjct: 131 KKLNVAHNFIHSCKLPAYF----SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQ-LGRLKSFSVANNL 179
           D+S N     I         L+ L L  N  S  I     Q L  L    +    
Sbjct: 187 DMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 10/102 (9%)

Query: 86  QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG---------SI 136
                      +  L L  N    ++     + +  L    L    F           SI
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 137 PTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              L + +     +L +         +   L  + + S+A  
Sbjct: 255 MEGLCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 73  VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNF 132
           +   RLT               ++++ + L+   +   L D           L +     
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDVPKHF--KWQSLSIIRCQL 319

Query: 133 SGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
                 +L     L SL L  N+ S  I  +   L  L    ++ N
Sbjct: 320 KQFPTLDLPF---LKSLTLTMNKGS--ISFKKVALPSLSYLDLSRN 360

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 93  NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN--CSYLNSLK 150
           +   +  L L+ NK   S+      L   L+ LDLS N  S S   + ++   + L  L 
Sbjct: 326 DLPFLKSLTLTMNKG--SISFKKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L  N     +      L  L+     ++
Sbjct: 383 LSFNGAII-MSANFMGLEELQHLDFQHS 409

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 16/108 (14%)

Query: 71  NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130
           N+   L+L  + L    P  +     +T L+++ N L  SLP+  +     L  LD   N
Sbjct: 59  NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNAL-ISLPELPAS----LEYLDACDN 110

Query: 131 NFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             S ++P   A+  +L+   +D+N+ +  +P     L  +   +  NN
Sbjct: 111 RLS-TLPELPASLKHLD---VDNNQLT-MLPELPALLEYI---NADNN 150

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVG---FLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151
            S+  LD+S+N L  SLP    +               N  +  IP N+ +     ++ L
Sbjct: 180 ESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237

Query: 152 DHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           + N  S +I   L Q      +      
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 7e-08
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 17/104 (16%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
            L   D  L    P    +      LD+ +N+L   LP+  + L      ++  +N  + 
Sbjct: 104 YLDACDNRLS-TLPELPASL---KHLDVDNNQL-TMLPELPALL----EYINADNNQLT- 153

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            +P    +   L  L + +N+ +  +P     L  L    V+ N
Sbjct: 154 MLPELPTS---LEVLSVRNNQLT-FLPELPESLEAL---DVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 15/108 (13%), Positives = 28/108 (25%), Gaps = 8/108 (7%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMT----GLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
           L ++   L+   P                    N++   +P++I  L      + L  N 
Sbjct: 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDP-TCTIILEDNP 241

Query: 132 FSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            S S      +             +      Q   L R  + +V    
Sbjct: 242 LS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 9e-10
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 94  CSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDH 153
            +    L++  + L  +LPD +      +T L +  NN + S+P        L +L++  
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLPAH---ITTLVIPDNNLT-SLPALPPE---LRTLEVSG 90

Query: 154 NRFSGQIPPQLGQLGRLKSFSVANN 178
           N+ +  +P     L  L  FS    
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLT 114

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 19/107 (17%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
              N RLT        P      S +  L +S N+L  SLP   S+L      L +S N 
Sbjct: 207 WAYNNRLT------SLPALP---SGLKELIVSGNRL-TSLPVLPSEL----KELMVSGNR 252

Query: 132 FSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            + S+P   +    L SL +  N+ + ++P  L  L    + ++  N
Sbjct: 253 LT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 8e-08
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 17/104 (16%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
            L   +  L    P      S +  L +S N+L  SLP   S+    L  L   +N  + 
Sbjct: 165 KLWAYNNQLT-SLPMLP---SGLQELSVSDNQL-ASLPTLPSE----LYKLWAYNNRLT- 214

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           S+P   +    L  L +  NR +  +P    +L  L    V+ N
Sbjct: 215 SLPALPSG---LKELIVSGNRLT-SLPVLPSELKEL---MVSGN 251

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 14/97 (14%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
            L ++   L    P        ++        L          L   L  L +  N  + 
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL--------PALPSGLCKLWIFGNQLT- 134

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLK 171
           S+P        L  L +  N+ +  +P    +L +L 
Sbjct: 135 SLPVLPPG---LQELSVSDNQLA-SLPALPSELCKLW 167

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L + + GL    P  +   + +T L +  N L  SLP    +L      L++S N  + S
Sbjct: 45  LNVGESGLT-TLPDCL--PAHITTLVIPDNNL-TSLPALPPEL----RTLEVSGNQLT-S 95

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRL 170
           +P        L+            +P     L +L
Sbjct: 96  LPVLPPGLLELSIFSNPLT----HLPALPSGLCKL 126

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
            L +    L    P           L +S N+L  SLP   S+L      L   +N  + 
Sbjct: 125 KLWIFGNQLT-SLPVLPPGLQE---LSVSDNQL-ASLPALPSEL----CKLWAYNNQLT- 174

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           S+P   +    L  L +  N+ +  +P    +L +L +++  N L
Sbjct: 175 SLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYN--NRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHN 154
           S +  L +S N+L  SLP   S L      L +  N  +  +P +L + S   ++ L+ N
Sbjct: 241 SELKELMVSGNRL-TSLPMLPSGL----LSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 155 RFSGQIPPQLGQLGRLKSFS 174
             S +    L ++     +S
Sbjct: 295 PLSERTLQALREITSAPGYS 314

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 3/110 (2%)

Query: 70  ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSS 129
           E  V ++ L                S +  LDL++  L   LP  +  L   L  L LS+
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGL-STLKKLVLSA 310

Query: 130 NNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           N F      + +N   L  L +  N    ++    L  L  L+   ++++
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN 147
               ++   +  L L++N L       +S     L  L       S      L N   L 
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           SL L  N  S    P+     +LK     NN
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L L+            + C  +  LDL+  +L         + +  L  L+LS +    S
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 136 IPTNLANCSYLNSLKLDHNRFSG---QIPPQLGQLGRLKSFSVANN 178
                     L  L L  N F     Q    L  LGRL+   ++  
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 65  CWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG 124
           C   + NK  N    ++GL  + P  +   +S   L+ S N L        S+L+  LT 
Sbjct: 8   CIEKEVNKTYNCE--NLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLI-NLTF 61

Query: 125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           LDL+             +   L++L L  N         L     LK       
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 2/105 (1%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L L+    +        N  S+T L +  N     L     + +  L  LDLS ++   S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 136 IPTN--LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              N  L N S+L SL L +N           +  +L+   +A  
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 82  GLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLA 141
               Q    ++    +  L LS   L  S+       +  +  +DLS N  + S    L+
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 142 NCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +   +  L L  N  S  +P  L  L + ++ ++  N
Sbjct: 522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
           + L+L   D+         +RN S +  L+LS N+      +   +    L  LDL+   
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTR 411

Query: 132 FSGSIPTN-LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
                  +   N   L  L L H+            L  L+  ++  N
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLDLSSNNFS 133
           L L+   L     +      ++  L+L  N          + L     L  L LS  + S
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 134 GSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
                   +   +N + L HNR +      L  L  +     +N++
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 76  LRLTDMGLKGQFPRG-IRNCSSMTGLDLSSNKLYGS--LPDDISKLVGFLTGLDLSSNNF 132
           L +     + +   G + N  ++  LDLS + +  S      +  L   L  L+LS N  
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEP 388

Query: 133 SGSIPTNLANCSYLNSLKLDHNRFSGQIPP-QLGQLGRLKSFSVANN 178
                     C  L  L L   R   +        L  LK  +++++
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 1/87 (1%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN 147
              +    ++  L      +       +      L  L L SN+ S            L 
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKT-LESLYLGSNHISSIKLPKGFPTEKLK 156

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFS 174
            L   +N         +  L +  + S
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLS 183

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLS-SNNFSG 134
           L L    +             +  LD  +N ++    +D+S L    T L L+ + N   
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATNLSLNLNGNDIA 192

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLG--QLGRLKSFSVANN 178
            I     + +   SL     +    I   L    +  L   +  + 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L L+   L         +   M  +DLS N+L  S  + +S L      L+L+SN+ S  
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK--GIYLNLASNHISII 538

Query: 136 IPTNLANCSYLNSLKLDHNRFSG 158
           +P+ L   S   ++ L  N    
Sbjct: 539 LPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 4/110 (3%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKL-VGFLTGLDLSSN 130
             L+L L    + G    G  + +    L+    +    +   +    +  L        
Sbjct: 180 TNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 131 NFSGSIPTNLANCSYLN--SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +     P        ++  S+ L  + F             L+   +   
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 86  QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSY 145
            F     +  ++  L+L  N +Y  +   +      L  LDLSSN  +  +     + + 
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVF--AKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 146 LNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +  + L +N+    I   L     L+ F +  N
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
            +N +      ++ + L       + +    +  LDLS N  S     +LA  + L  L 
Sbjct: 6   KQNGNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L  N         L  L  L++  + NN
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
            ++TD  LK       ++  ++  LDLS N L      D++     L  L+LSSN     
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLY-E 72

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              +L + S L +L L++N        +L     +++   ANN
Sbjct: 73  TL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN 109

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           +    S+  L  ++N +   +     +       + L++N  +     +    S +  L 
Sbjct: 95  LLVGPSIETLHAANNNI-SRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 151 LDHNRFSG-QIPPQLGQLGRLKSFSVANN 178
           L  N                L+  ++  N
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 8/65 (12%), Positives = 25/65 (38%)

Query: 114 DISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSF 173
           +I +         ++ ++   ++ +   +   +  L L  N  S      L    +L+  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 174 SVANN 178
           ++++N
Sbjct: 64  NLSSN 68

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
             +  ++  L+L  N +Y  +   +  +   L  LDLSSN  +  +     + + +  + 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L +N+    I   L     L+ F +  N
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGN 247

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           N+ L +  +           S +  LDL  N++      +++     L  L+L  N    
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            +       + L +L L  N+ +  + P+      +   S+ NN
Sbjct: 183 DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
            +N +      ++ + L       + +    +  LDLS N  S     +LA  + L  L 
Sbjct: 6   KQNGNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L  N         L  L  L++  + NN
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 93  NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152
             + +  LDLSSNKL   +  +     G +T + L +N     I   L     L    L 
Sbjct: 189 VFAKLKTLDLSSNKL-AFMGPEFQSAAG-VTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 153 HNRFSGQIPPQL-GQLGRLKSFSVANN 178
            N F          +  R+++ +    
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 71  NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130
           N+    ++TD  LK       ++  ++  LDLS N L      D++     L  L+LSSN
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSN 68

Query: 131 NFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
               ++   L + S L +L L++N        +L     +++   ANN
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN 109

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           +    S+  L  ++N +   +     +       + L++N  +     +    S +  L 
Sbjct: 95  LLVGPSIETLHAANNNI-SRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 151 LDHNRFSGQIPPQL-GQLGRLKSFSVANN 178
           L  N        +L      L+  ++  N
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 8/65 (12%), Positives = 25/65 (38%)

Query: 114 DISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSF 173
           +I +         ++ ++   ++ +   +   +  L L  N  S      L    +L+  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 174 SVANN 178
           ++++N
Sbjct: 64  NLSSN 68

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            I   S++  L +    +      ++S L   LT LD+S +    SI T +     +NS+
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L +N     I P L  L  LKS ++  +
Sbjct: 142 DLSYNGAITDIMP-LKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLDLSSNNFSGSIPTNLANCSYLN 147
           GI    ++  L +++         + + + G   L  L +   + +     NL+  + L 
Sbjct: 61  GIEYAHNIKDLTINNIHA-----TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L + H+     I  ++  L ++ S  ++ N
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
            LR+    +       +   +S+T LD+S +    S+   I+ L   +  +DLS N    
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK-VNSIDLSYNGAIT 150

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            I   L     L SL +  +         +    +L      + 
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 86  QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSY 145
           +        + +  L L+   L  ++   + +L+  +T LDLS N    ++P  LA    
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLL-LVTHLDLSHNRLR-ALPPALAALRC 487

Query: 146 LNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L  L+   N     +   +  L RL+   + NN
Sbjct: 488 LEVLQASDNALE-NVDG-VANLPRLQELLLCNN 518

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            +++ + +  L++ SN++  S    ++ L   L  L L++N         +   + L +L
Sbjct: 260 AVKDLTKLKMLNVGSNQI--SDISVLNNLSQ-LNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L  N  +  I P L  L ++ S   AN 
Sbjct: 317 FLSQNHITD-IRP-LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           + N + M  L+L +N    S    +S + G L  L ++ +      P  +AN + L SL 
Sbjct: 128 LANLTKMYSLNLGANHN-LSDLSPLSNMTG-LNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L++N+     P  L  L  L  F+   N
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            ++N +++  L L+ + +  S    ++ L   +  L+L +N+   S  + L+N + LN L
Sbjct: 105 ALQNLTNLRELYLNEDNI--SDISPLANLTK-MYSLNLGANHNL-SDLSPLSNMTGLNYL 160

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            +  ++    + P +  L  L S S+  N
Sbjct: 161 TVTESKVKD-VTP-IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            I N + +  L L+ N++    P  ++ L   L       N  +   P  +AN + LNSL
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISP--LASLTS-LHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           K+ +N+ +   P  L  L +L    +  N
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTN 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            + N + +  L + +NK+    P  ++ L   LT L++ +N  S      + + + L  L
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQ-LTWLEIGTNQISD--INAVKDLTKLKML 270

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            +  N+ S      L  L +L S  + NN
Sbjct: 271 NVGSNQISD--ISVLNNLSQLNSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            + N S +  L L++N+L     + I  L   LT L LS N+ +   P  LA+ S ++S 
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHITDIRP--LASLSKMDSA 338

Query: 150 KLDHNRFS 157
              +    
Sbjct: 339 DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLDLSSNNFSGSIPTNLANCSYLN 147
           GI   +++  L+L+ N++      DIS L     LT L + +N    +  + L N + L 
Sbjct: 61  GIEYLTNLEYLNLNGNQI-----TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L L+ +  S  I P L  L ++ S ++  N
Sbjct: 114 ELYLNEDNISD-ISP-LANLTKMYSLNLGAN 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
            L      +   FP    + +      L    +   +     +L   +T L ++    + 
Sbjct: 4   TLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELES-ITKLVVAGEKVA- 57

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           SI   +   + L  L L+ N+ +   P  L  L +L +  +  N 
Sbjct: 58  SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK 99

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           + N   +  +DLS N+L   +       +  L  L +S+N    ++         L  L 
Sbjct: 244 LLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 301

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L HN     +     Q  RL++  + +N
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151
                +  L +S+N+L  +L      +   L  LDLS N+    +  N      L +L L
Sbjct: 269 VKMQRLERLYISNNRL-VALNLYGQPI-PTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178
           DHN     +         LK+ ++++N
Sbjct: 326 DHNSIV-TLKL--STHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 94  CSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
              +T L L  N L      D + L+ +  L  +DLS N     I  +       L  L 
Sbjct: 225 NVELTILKLQHNNL-----TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLY 278

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           + +NR    +      +  LK   +++N
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
            +   +  L+L+  ++   +          +  L +  N     +P +   N   L  L 
Sbjct: 66  DSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123

Query: 151 LDHNRFSGQIPPQL-GQLGRLKSFSVANN 178
           L+ N  S  +P  +     +L + S++NN
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNN 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 86  QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSY 145
                 +   ++  LDLS N L   +  +  +    L  L L  N+   ++   L+    
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSIV-TLK--LSTHHT 340

Query: 146 LNSLKLDHNRFS 157
           L +L L HN + 
Sbjct: 341 LKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 100 LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLKLDHNRFSG 158
           +   ++ +   LP  +      +  L+L+       I T   A    +  L +  N    
Sbjct: 50  VTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR- 106

Query: 159 QIPPQLGQ-LGRLKSFSVANN 178
            +PP + Q +  L    +  N
Sbjct: 107 YLPPHVFQNVPLLTVLVLERN 127

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
           +N   +T L L  N L  SLP  I      LT L +S+NN    I  +     + L +L+
Sbjct: 114 QNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQ 171

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L  NR +  +      +  L   +V+ N
Sbjct: 172 LSSNRLT-HVDL--SLIPSLFHANVSYN 196

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 1/93 (1%)

Query: 87  FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYL 146
                     +  LD   + L       +   +  L  LD+S  +   +        S L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 147 NSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
             LK+  N F     P    +L  L    ++  
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHN 154
            S   LDLS N L              L  LDLS             + S+L++L L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 155 RFSGQIPPQLGQLGRLKSFSVANN 178
                       L  L+       
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVET 110

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN 147
               ++ S ++ L L+ N +        S L   L  L     N +      + +   L 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTLK 127

Query: 148 SLKLDHNRF-SGQIPPQLGQLGRLKSFSVANN 178
            L + HN   S ++P     L  L+   +++N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           NL L+   L+        +   +  LDLS  ++          L   L+ L L+ N    
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQS 90

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
                 +  S L  L       +      +G L  LK  +VA+N
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN 131
           + L+L    +  KG   +     +S+  LDLS N +  ++  +   L   L  LD   +N
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSN 407

Query: 132 FSGSIPTN-LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
                  +   +   L  L + H             L  L+   +A N
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 23/103 (22%), Positives = 37/103 (35%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L ++    +  F       SS+  L ++ N    +   DI   +  LT LDLS       
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 136 IPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            PT   + S L  L +  N+          +L  L+   +  N
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 76  LRLTDMGLKGQFPRGI-RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           L++     +  F   I     ++T LDLS  +L   L       +  L  L+++SN    
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 135 SIPTNLANCSYLNSLKLDHNRFS 157
                    + L  + L  N + 
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 4/78 (5%)

Query: 101 DLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQI 160
                  Y  +PD++         LDLS N        +  +   L  L L         
Sbjct: 13  QCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 161 PPQLGQLGRLKSFSVANN 178
                 L  L +  +  N
Sbjct: 69  DGAYQSLSHLSTLILTGN 86

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKL-YGSLPDDISKLVGFLTGLDLSSNNFSG 134
           L   +  L       I +  ++  L+++ N +    LP+  S L   L  LDLSSN    
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQS 163

Query: 135 SIPTNLANCSYL----NSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
              T+L     +     SL L  N  +  I P   +  RL   ++ NN 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNF 211

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            + N   +  +DLS N+L   +       +  L  L +S+N    ++         L  L
Sbjct: 249 WLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 306

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L HN     +     Q  RL++  + +N
Sbjct: 307 DLSHNHLL-HVERNQPQFDRLENLYLDHN 334

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151
                +  L +S+N+L  +L      +   L  LDLS N+    +  N      L +L L
Sbjct: 275 VKMQRLERLYISNNRL-VALNLYGQPIPT-LKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178
           DHN     +         LK+ ++++N
Sbjct: 332 DHNSIV-TLKL--STHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           +    ++  LD S N +   +   ++     LT L L  NN +      L N   L  + 
Sbjct: 207 LAIPIAVEELDASHNSI-NVVRGPVNV---ELTILKLQHNNLT-DTAW-LLNYPGLVEVD 260

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           L +N    +I      ++ RL+   ++NN
Sbjct: 261 LSYNELE-KIMYHPFVKMQRLERLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 86  QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSY 145
                 +   ++  LDLS N L   +  +  +    L  L L  N+   ++   L+    
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSIV-TLK--LSTHHT 346

Query: 146 LNSLKLDHNRFS 157
           L +L L HN + 
Sbjct: 347 LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
           +N   +T L L  N L  SLP  I      LT L +S+NN    I  +     + L +L+
Sbjct: 120 QNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQ 177

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L  NR +  +      +  L   +V+ N
Sbjct: 178 LSSNRLT-HVDL--SLIPSLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 74  LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFS 133
            ++ +        F       ++   +   ++ +   LP  +      +  L+L+     
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE 88

Query: 134 GSIPTN-LANCSYLNSLKLDHNRFSGQIPPQLGQ-LGRLKSFSVANN 178
             I T   A    +  L +  N     +PP + Q +  L    +  N
Sbjct: 89  -EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 133

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 7/139 (5%)

Query: 40  FNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTG 99
            + L+ S N      G I     ++        + N  +      G           + G
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET--PSGVCSALAAARVQLQG 232

Query: 100 LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ 159
           LDLS N L  +           L  L+LS       +P  L   + L+ L L +NR    
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR- 288

Query: 160 IPPQLGQLGRLKSFSVANN 178
             P   +L ++ + S+  N
Sbjct: 289 -NPSPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 9/117 (7%)

Query: 71  NKVLNLRLTDMGLKGQFPRGIRNCS--SMTGLDLSSNKLYG---SLPDDISKLVGFLTGL 125
           + +  L L ++ + G  P  +   +   +  L+L +         L +    L   L  L
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIP----PQLGQLGRLKSFSVANN 178
            ++  +        +     L++L L  N   G+          +   L+  ++ N 
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           +L+    G +    + + N +++  LD+SSNK+  S    ++KL   L  L  ++N  S 
Sbjct: 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTN-LESLIATNNQISD 213

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             P  L   + L+ L L+ N+        L  L  L    +ANN
Sbjct: 214 ITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            +   + +T L L +N++       ++ L   LT L+L+ N      P  ++N   L  L
Sbjct: 260 PLSGLTKLTELKLGANQISNI--SPLAGLTA-LTNLELNENQLEDISP--ISNLKNLTYL 314

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L  N  S   P  +  L +L+     NN
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNN 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           ++N + +  + +++N++  +    ++ L   LTGL L +N  +   P  L N + LN L+
Sbjct: 86  LKNLTKLVDILMNNNQI--ADITPLANLTN-LTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           L  N  S      L  L  L+  S  N +
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFGNQV 167

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 71  NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLDLS 128
           ++V  L+   +G+K     G+   +++T ++ S+N+L      DI+ L     L  + ++
Sbjct: 46  DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQL-----TDITPLKNLTKLVDILMN 98

Query: 129 SNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +N  +   P  LAN + L  L L +N+ +   P  L  L  L    +++N
Sbjct: 99  NNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 144

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            + + +++T LDL++N++    P  +S L   LT L L +N  S   P  LA  + L +L
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTK-LTELKLGANQISNISP--LAGLTALTNL 292

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +L+ N+     P  +  L  L   ++  N
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 68  PDEN--KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGL 125
            D    + +   L    +         +   +T L      +     D +  L   LT +
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNN-LTQI 73

Query: 126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           + S+N  +   P  L N + L  + +++N+ +   P  L  L  L   ++ NN
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           ++N +++  L+LSSN +  S    +S L   L  L    N  +   P  LAN + L  L 
Sbjct: 130 LKNLTNLNRLELSSNTI--SDISALSGLTS-LQQLSF-GNQVTDLKP--LANLTTLERLD 183

Query: 151 LDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +  N+ S      L +L  L+S    NN
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN 147
              + N +++  L    N++    P  ++ L   +T L L+   ++ +     AN S  N
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP--LANLTR-ITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
           ++K          P  +   G      +  NL
Sbjct: 403 TVKNVTGALI--APATISDGGSYTEPDITWNL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
            + + + +  L   +NK+  S    ++ L   +  L    N  S   P  LAN + +  L
Sbjct: 326 PVSSLTKLQRLFFYNNKV--SDVSSLANLTN-INWLSAGHNQISDLTP--LANLTRITQL 380

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL 179
            L+   ++         +    +       
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 93  NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152
           +C +    D  S     S+P  ++     +  LDLS N  +     +L  C+ L  L L 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 153 HNRFSGQIPPQ-LGQLGRLKSFSVANN 178
            +R +  I       LG L+   +++N
Sbjct: 59  SSRIN-TIEGDAFYSLGSLEHLDLSDN 84

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 11/143 (7%)

Query: 41  NYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGL 100
             LN   +FN      + +   VE        +  L +    L             +  +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVET-----VTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 101 DLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN---LANCSYLNSLKLDHNRFS 157
            + ++K++  +P   S+ +  L  LDLS N        N         L +L L  N   
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 158 --GQIPPQLGQLGRLKSFSVANN 178
              +    L  L  L S  ++ N
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRN 397

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN 147
              +R C+++  L L S+++  ++  D    +G L  LDLS N+ S    +     S L 
Sbjct: 43  HGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101

Query: 148 SLKLDHNRFSG-QIPPQLGQLGRLKSFSVANN 178
            L L  N +    +      L  L++  + N 
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 1/104 (0%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L L+D  L           SS+  L+L  N         +   +  L  L + +      
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 136 IPTN-LANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           I     A  + LN L++            L  +  +   ++  +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 14/110 (12%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 72  KVLNL---RLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLS 128
           K LNL       +G+   F     N +++  L + + + +  +       +  L  L++ 
Sbjct: 101 KYLNLMGNPYQTLGVTSLF----PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 129 SNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           + +       +L +   ++ L L  +  +  +      L  ++   + + 
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 72  KVLNL---RLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLD 126
           + L+L    + +  LK    +G     S+  L LS N L  S+      L+    LT LD
Sbjct: 337 EFLDLSENLMVEEYLKNSACKG--AWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLD 393

Query: 127 LSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +S N F   +P +      +  L L        +         L+   V+NN
Sbjct: 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNN 441

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           ++N S +  +D+ +N L   LPD        L  +   +N     +P  L N  +L ++ 
Sbjct: 149 LQNSSFLKIIDVDNNSL-KKLPDLPPS----LEFIAAGNNQLE-ELP-ELQNLPFLTAIY 201

Query: 151 LDHNRFSGQIPPQLGQLGRL 170
            D+N    ++P     L  +
Sbjct: 202 ADNNSLK-KLPDLPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 17/105 (16%)

Query: 86  QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF------------LTGLDLSSNNFS 133
           + P    N  S T    + ++   + P    +                   L+L++   S
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 134 GSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            S+P    +   L SL    N  + ++P     L  L   +    
Sbjct: 85  -SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           ++N   +T +   +N L   LPD    L      +   +N         L N  +L ++ 
Sbjct: 191 LQNLPFLTAIYADNNSL-KKLPDLPLSL----ESIVAGNNILE--ELPELQNLPFLTTIY 243

Query: 151 LDHNRFSGQIPPQLGQLGRL 170
            D+N     +P     L  L
Sbjct: 244 ADNNLLK-TLPDLPPSLEAL 262

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 93  NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152
              S+  L++S+NKL   LP    +    L  L  S N+ +  +P    N   L  L ++
Sbjct: 315 LPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVPELPQN---LKQLHVE 365

Query: 153 HNRFSGQIPPQLGQLGRLK 171
           +N    + P     +  L+
Sbjct: 366 YNPLR-EFPDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 21/94 (22%)

Query: 100 LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ 159
           L+L++  L  SLP+    L      L  S N+ +  +P    +   L     +    S  
Sbjct: 76  LELNNLGL-SSLPELPPHL----ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 160 IP---------------PQLGQLGRLKSFSVANN 178
            P               P+L     LK   V NN
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 163

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 75  NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           +L  +   L  + P   ++  S+   + +   L        S L   L  L +S+N    
Sbjct: 95  SLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL--------SDLPPLLEYLGVSNNQLE- 144

Query: 135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRL 170
            +P  L N S+L  + +D+N    ++P     L  +
Sbjct: 145 KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           ++N   +T +   +N L  +LPD        L  L++  N  +  +P    + ++L+  +
Sbjct: 233 LQNLPFLTTIYADNNLL-KTLPDLPPS----LEALNVRDNYLT-DLPELPQSLTFLDVSE 286

Query: 151 LDHNRFSGQIPPQLGQL 167
              +  S ++PP L  L
Sbjct: 287 NIFSGLS-ELPPNLYYL 302

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151
            +   +  L L    +  ++ D   K +  L  L++S   +  ++  N      L SL +
Sbjct: 173 SHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 152 DHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
            H   +  +P   +  L  L+  +++ N
Sbjct: 232 THCNLT-AVPYLAVRHLVYLRFLNLSYN 258

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 76  LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS 135
           L ++                ++T L ++   L  ++P    + + +L  L+LS N  S +
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIS-T 262

Query: 136 IPTN-LANCSYLNSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           I  + L     L  ++L   + +  + P     L  L+  +V+ N
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151
              +S+  L L    L  S+P +    +  L  L L   N +     +      L  L++
Sbjct: 149 SGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 152 DHNRFSGQIPPQLGQLGRLKSFSVANN 178
            H  +   + P       L S S+ + 
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHC 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLKLDH 153
           +    LDL  N++  +L  D       L  L+L+ N  S ++      N   L +L L  
Sbjct: 32  TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 154 NRFSGQIPPQ-LGQLGRLKSFSVANN 178
           NR    IP      L  L    ++ N
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISEN 114

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151
            N  ++  L L SN+L   +P  +   +  LT LD+S N     +     +   L SL++
Sbjct: 77  NNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 152 DHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
             N     I  +    L  L+  ++   
Sbjct: 136 GDNDLV-YISHRAFSGLNSLEQLTLEKC 162

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151
                +  L+L S     ++  +  + +  L  LDL S+      P       +L  L+L
Sbjct: 45  PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104

Query: 152 DHNRFSGQIPPQ--LGQLGRLKSFSVANN 178
                S  +        L  L    ++ N
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSI--PTNLANCSY 145
               RN  ++  LDL S+K+Y  L  D  + +  L  L L     S ++       N   
Sbjct: 66  KEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 146 LNSLKLDHNRFSG-QIPPQLGQLGRLKSFSVANN 178
           L  L L  N+     + P  G+L  LKS   ++N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL-----ANCSY 145
           +     +  L L+ N+      D        L  L L  N    +  T L        S+
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 146 LNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L  L L+HN  +   P     L  L+  S+ +N
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 4/89 (4%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
           +  ++   L LS N +          L   L  L+L S     +I      N   L  L 
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQ-LQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           L  ++    + P     L  L    +   
Sbjct: 80  LGSSKIY-FLHPDAFQGLFHLFELRLYFC 107

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 100 LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ 159
                  L   +P  ++        L LS N       ++      L  L+L        
Sbjct: 9   AFYRFCNLT-QVPQVLNTT----ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 160 IPPQ-LGQLGRLKSFSVANN 178
           I  +    L  L+   + ++
Sbjct: 64  IDKEAFRNLPNLRILDLGSS 83

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 35  SLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNC 94
           SL    + + + + F+N  +     F G+       + V +L L+   +     R     
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLA-----RSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHN 154
             +  L+L+ NK+   + D+    +  L  L+LS N       +N      +  + L  N
Sbjct: 290 KDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 155 RFSGQIPPQLGQLGRLKSFSVANNL 179
             +         L +L++  + +N 
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNA 373

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 93  NCSSMTGLDLSSNKL----YGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS 148
              S+  L L  N L       L  D+ + +  L  L L+ N  +   P   ++ + L  
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           L L+ NR +  +         L+   ++ N
Sbjct: 509 LSLNSNRLT-VLSHND-LPANLEILDISRN 536

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 3/93 (3%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYL 146
                    +  LD   + L       +   +  L  LD+S  +             S L
Sbjct: 94  SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSL 152

Query: 147 NSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
             LK+  N F     P    +L  L    ++  
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
              SS+  L ++ N    +   DI   +  LT LDLS       +      + S L  L 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           + HN F   +       L  L+    + N
Sbjct: 206 MSHNNFF-SLDTFPYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 92  RNCSSMTGLDLSSNKLY-GSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
              + +T L LSSN L               L  LDLS N    ++ +N      L  L 
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107

Query: 151 LDHNRFSGQIPPQ--LGQLGRLKSFSVANN 178
             H+    Q+        L  L    +++ 
Sbjct: 108 FQHSNLK-QMSEFSVFLSLRNLIYLDISHT 136

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 76  LRLTDMGLKGQFPRGI-RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG 134
           L++     +  F   I     ++T LDLS  +L   L       +  L  L++S NNF  
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFF- 212

Query: 135 SIPTN-LANCSYLNSLKLDHNRFSGQIPPQL--GQLGRLKSFSVANN 178
           S+ T      + L  L    N        Q        L   ++  N
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLDLSSNNFSGSIPTNLANCSYLN 147
           GI+   ++T L L+ NKL      DI  L     L  L L  N     + ++L +   L 
Sbjct: 60  GIQYLPNVTKLFLNGNKL-----TDIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLK 112

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           SL L+HN  S  I   L  L +L+S  + NN
Sbjct: 113 SLSLEHNGIS-DING-LVHLPQLESLYLGNN 141

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL 149
           G+ +   +  L L +NK+  +    +S+L   L  L L  N  S  I   LA  + L +L
Sbjct: 126 GLVHLPQLESLYLGNNKI--TDITVLSRLTK-LDTLSLEDNQIS-DIV-PLAGLTKLQNL 180

Query: 150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L  N  S  +   L  L  L    + + 
Sbjct: 181 YLSKNHIS-DLRA-LAGLKNLDVLELFSQ 207

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151
           +  +++  L LS N +  ++ +        L  L L++N     +P  LA+  Y+  + L
Sbjct: 213 KGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 152 DHNRFSG------QIPPQLGQLGRLKSFSVANN 178
            +N  S         P    +       S+ +N
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLKLDH 153
            S+T L L  NK+       +  L   L  L LS N+ S ++    LAN  +L  L L++
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSFNSIS-AVDNGSLANTPHLRELHLNN 249

Query: 154 NRFSGQIPPQLGQLGRLKSFSVANN 178
           N+   ++P  L     ++   + NN
Sbjct: 250 NKLV-KVPGGLADHKYIQVVYLHNN 273

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-------L 140
              + N   +  L L++NKL   +P  ++    ++  + L +NN S +I +N        
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADH-KYIQVVYLHNNNIS-AIGSNDFCPPGYN 289

Query: 141 ANCSYLNSLKLDHNRFS-GQIPPQL-GQLGRLKSFSVANN 178
              +  + + L  N     +I P     +    +  + N 
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 14/112 (12%)

Query: 72  KVLNL---RLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLS 128
            V+ L    L   G++       +    ++ + ++   +  ++P     L   LT L L 
Sbjct: 148 IVVELGTNPLKSSGIE---NGAFQGMKKLSYIRIADTNI-TTIPQG---LPPSLTELHLD 200

Query: 129 SNNFSGSIPTN-LANCSYLNSLKLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
            N  +  +    L   + L  L L  N  S  +    L     L+   + NN
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNN 250

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 92  RNCS-SMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSL 149
             C   +  +  S   L   +P D+         LDL +N  +  I      N   L++L
Sbjct: 27  FRCQCHLRVVQCSDLGL-EKVPKDLPP---DTALLDLQNNKIT-EIKDGDFKNLKNLHTL 81

Query: 150 KLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
            L +N+ S +I P     L +L+   ++ N
Sbjct: 82  ILINNKIS-KISPGAFAPLVKLERLYLSKN 110

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL 151
              S +  L L  N++   + +     +  L  L L +N  S  +P  L +   L  + L
Sbjct: 214 LRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

Query: 152 DHNRFS 157
             N  +
Sbjct: 272 HTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 92  RNCS-SMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSL 149
             C   +  +  S   L  ++P +IS      T LDL +N+ S  +  +      +L +L
Sbjct: 29  FGCHCHLRVVQCSDLGL-KAVPKEISP---DTTLLDLQNNDIS-ELRKDDFKGLQHLYAL 83

Query: 150 KLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
            L +N+ S +I  +    L +L+   ++ N
Sbjct: 84  VLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSL 149
               ++  LDLSSN L  +L + + S L   L  L L +N+    +  N   + + L  L
Sbjct: 85  VPVPNLRYLDLSSNHL-HTLDEFLFSDLQA-LEVLLLYNNHIV-VVDRNAFEDMAQLQKL 141

Query: 150 KLDHNRFSGQIPPQ----LGQLGRLKSFSVANN 178
            L  N+ S + P +      +L +L    +++N
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHN 154
            S+  LD+S N +              L  L++SSN  + +I   L     +  L L  N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431

Query: 155 RFSGQIPPQLGQLGRLKSFSVANN 178
           +    IP Q+ +L  L+  +VA+N
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 100 LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ 159
           +D S N L   +P D+S+     T L++S N  S    +++ + S L  L + HNR    
Sbjct: 5   VDRSKNGLI-HVPKDLSQKT---TILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59

Query: 160 IPP----QLGQLGRL 170
           +         +L  L
Sbjct: 60  LDISVFKFNQELEYL 74

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
           R C ++T L L SN L   +       +  L  LDLS N    S+          L++L 
Sbjct: 53  RACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           LD      ++ P     L  L+   + +N
Sbjct: 112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDN 139

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
           R+  ++T L L  N++  S+P+   + +  L  L L  N  +  +  +   +   L +L 
Sbjct: 150 RDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLY 207

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           L  N  S  +P + L  L  L+   + +N
Sbjct: 208 LFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
                +  L L    L   L   + + +  L  L L  N    ++P +   +   L  L 
Sbjct: 102 HGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           L  NR S  +P +    L  L    +  N
Sbjct: 160 LHGNRIS-SVPERAFRGLHSLDRLLLHQN 187

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSL 149
           R  +++  L L  N L  +LPDD    L   LT L L  N  S S+P         L+ L
Sbjct: 126 RGLAALQYLYLQDNAL-QALPDDTFRDLGN-LTHLFLHGNRIS-SVPERAFRGLHSLDRL 182

Query: 150 KLDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
            L  NR +  + P     LGRL +  +  N
Sbjct: 183 LLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYL 146
              +    ++T L + + +    L     + +G L  L +  +     +  +       L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82

Query: 147 NSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           + L L  N     +  +  Q   L+   ++ N
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLDLSSNNFSGSIPTNLANCSYLN 147
            +   S++  L L  N++      +IS L G   L  L + +   S  +   LAN S L 
Sbjct: 124 PLAGLSNLQVLYLDLNQI-----TNISPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLT 176

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +LK D N+ S  I P L  L  L    + NN
Sbjct: 177 TLKADDNKIS-DISP-LASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 11/91 (12%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLDLSSNNFSGSIPTNLANCSYLN 147
           G++  +++ GL+L  N++      D++ L     +T L+LS N    ++   +A    + 
Sbjct: 58  GVQYLNNLIGLELKDNQI-----TDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIK 110

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           +L L   + +   P  L  L  L+   +  N
Sbjct: 111 TLDLTSTQITDVTP--LAGLSNLQVLYLDLN 139

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
              +S+  L+L  N L   +P    + +  L  L L +N    SIP+        L  L 
Sbjct: 120 NGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD 177

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           L   +    I       L  LK  ++   
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMC 206

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
                +  L++S N     +       +  L  L + ++  S  I  N     + L  L 
Sbjct: 215 TPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELN 272

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           L HN  S  +P      L  L    + +N
Sbjct: 273 LAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 94  CSSMTG-LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152
           CS+    +  +   L   +P  I         L+L  NN          +  +L  L+L 
Sbjct: 52  CSNQFSKVVCTRRGL-SEVPQGIPS---NTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 153 HNRFSGQIPPQ-LGQLGRLKSFSVANN 178
            N    QI       L  L +  + +N
Sbjct: 108 RNSIR-QIEVGAFNGLASLNTLELFDN 133

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
               ++  L+L    +   +P+ ++ LVG L  L++S N+F   I        S L  L 
Sbjct: 193 EGLFNLKYLNLGMCNIK-DMPN-LTPLVG-LEELEMSGNHFP-EIRPGSFHGLSSLKKLW 248

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           + +++ S  I       L  L   ++A+N
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHN 276

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 75  NLRLTDMGLK----GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN 130
           +L   D+ L       + R      S+  L+LSSN L GS+      L   +  LDL +N
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDLHNN 460

Query: 131 NFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKS 172
               SIP ++ +   L  L +  N+    +P   G   RL S
Sbjct: 461 RIM-SIPKDVTHLQALQELNVASNQLKS-VPD--GVFDRLTS 498

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL-ANCSYLNSLK 150
              +++  L+L  N+L  ++P+     +  L  L L +N    SIP+        L  L 
Sbjct: 109 NGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD 166

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           L   +    I       L  L+  ++A  
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMC 195

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSLK 150
                +  LDLS N L  ++     + +  L  L +  +     I  N   N   L  + 
Sbjct: 204 TPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEIN 261

Query: 151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANN 178
           L HN  +  +P      L  L+   + +N
Sbjct: 262 LAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 90  GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--LTGLDLSSNNFSGSIPTNLANCSYLN 147
           GI+   ++T L L+ NKL      DI  L     L  L L  N     + ++L +   L 
Sbjct: 63  GIQYLPNVTKLFLNGNKL-----TDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLK 115

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           SL L+HN  S  I   L  L +L+S  + NN
Sbjct: 116 SLSLEHNGIS-DING-LVHLPQLESLYLGNN 144

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 94  CSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDH 153
           C        SS  L  S+P  +++    +  LDLS+N  +    ++L  C  L +L L  
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85

Query: 154 NRFSGQIPPQL-GQLGRLKSFSVANN 178
           N  +  I       LG L+   ++ N
Sbjct: 86  NGIN-TIEEDSFSSLGSLEHLDLSYN 110

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 93  NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG----SIPT----NLANCS 144
           +  +++ L L   +    L +    +   +  L+L   +        + T    +L    
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 145 YLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
              ++K+       Q+   L Q+  L     + N
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 92  RNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTGLDLSSNNFSGSIPTNL-ANCSYLNSL 149
            +   +  LDLS  ++  ++ D     L   L+ L L+ N    S+     +  S L  L
Sbjct: 49  FSFPELQVLDLSRCEI-QTIEDGAYQSLS-HLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105

Query: 150 KLDHNRFSGQIPPQL-GQLGRLKSFSVANN 178
                  +  +     G L  LK  +VA+N
Sbjct: 106 VAVETNLA-SLENFPIGHLKTLKELNVAHN 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.58
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.57
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.56
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.56
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.54
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.54
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.54
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.53
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.51
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.51
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.49
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.49
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.48
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.47
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.46
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.41
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.4
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.4
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.37
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.35
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.33
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.31
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.3
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.3
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.3
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.3
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.3
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.24
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.23
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.2
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.1
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.02
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.92
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.75
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.84
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.39
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.24
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.81
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.17

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=6.1e-26  Score=177.24  Aligned_cols=153  Identities=29%  Similarity=0.450  Sum_probs=134.6

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcc--cceeeecCCC-CCcEEEEEecCCCcee--eCCccCcCC
Q 042065           20 YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICK--FTGVECWHPD-ENKVLNLRLTDMGLKG--QFPRGIRNC   94 (179)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~--w~gv~c~~~~-~~~l~~L~l~~~~l~~--~~p~~l~~l   94 (179)
                      .|.++|.+||++||+++.+|. .+. +|..+    .++|.  |.||+|.... .++|+.|+++++.+.+  .+|..+.++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~-~W~~~----~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l   75 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLS-SWLPT----TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGT-TCCTT----SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-ccc-CCCCC----CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCC
Confidence            477899999999999998776 566 99742    36777  9999997521 2689999999999998  899999999


Q ss_pred             CCCcEEEccc-CCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeE
Q 042065           95 SSMTGLDLSS-NKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSF  173 (179)
Q Consensus        95 ~~L~~L~L~~-n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L  173 (179)
                      ++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            9999999995 9999899999988 8999999999999998899999999999999999999998889999999999999


Q ss_pred             eccCCC
Q 042065          174 SVANNL  179 (179)
Q Consensus       174 ~l~~N~  179 (179)
                      ++++|+
T Consensus       155 ~L~~N~  160 (313)
T 1ogq_A          155 TFDGNR  160 (313)
T ss_dssp             ECCSSC
T ss_pred             ECcCCc
Confidence            998874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=2e-23  Score=176.97  Aligned_cols=152  Identities=21%  Similarity=0.266  Sum_probs=133.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCCCCC-------CCCCCCCCCCCCccc---ceeeecCCCCCcEEEEEecCCCceeeCCc
Q 042065           20 YGTKEDIACLKSIKDSLEDPFNYLNS-------SWNFNNDTEGFICKF---TGVECWHPDENKVLNLRLTDMGLKGQFPR   89 (179)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~-------~W~~~~~~~~~~c~w---~gv~c~~~~~~~l~~L~l~~~~l~~~~p~   89 (179)
                      +....|+.||.+++.++.++.|....       +|+.    +.++|.|   .||+|..  .++|+.|+|+++++.|.+|+
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~----~~~~c~w~~~~GV~C~~--~~~V~~L~L~~~~l~g~lp~   99 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNS--NGRVTGLSLEGFGASGRVPD   99 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC----SSCGGGTTCCTTEEECT--TCCEEEEECTTSCCEEEECG
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC----CCCcccccCCCCeEEcC--CCCEEEEEecCcccCCcCCh
Confidence            33446899999999999877655332       5874    3578999   9999976  37999999999999999999


Q ss_pred             cCcCCCCCcEEEcccCCC--------------------------------------------------------------
Q 042065           90 GIRNCSSMTGLDLSSNKL--------------------------------------------------------------  107 (179)
Q Consensus        90 ~l~~l~~L~~L~L~~n~l--------------------------------------------------------------  107 (179)
                      ++.++++|++|+|++|.+                                                              
T Consensus       100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  179 (636)
T 4eco_A          100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS  179 (636)
T ss_dssp             GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred             HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence            999999999999998843                                                              


Q ss_pred             ----------------CCCChhHHHhcccCccEEEcccCcCCcc-----------------cchhcc--CCccCCEeecc
Q 042065          108 ----------------YGSLPDDISKLVGFLTGLDLSSNNFSGS-----------------IPTNLA--NCSYLNSLKLD  152 (179)
Q Consensus       108 ----------------~g~~p~~~~~~l~~L~~L~L~~n~l~g~-----------------~p~~~~--~l~~L~~L~l~  152 (179)
                                      +| +|..+.+ +++|++|+|++|.++|.                 +|..++  ++++|++|+++
T Consensus       180 ~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~  257 (636)
T 4eco_A          180 RITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY  257 (636)
T ss_dssp             CCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             ccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence                            34 7888888 99999999999999985                 999999  99999999999


Q ss_pred             cccCcccCchhhcCCCCCCeEeccCCC
Q 042065          153 HNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +|++.|.+|..++++++|++|++++|+
T Consensus       258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          258 NCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             CCcCCccChHHHhcCCCCCEEECcCCC
Confidence            999999999999999999999999984

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=6.3e-23  Score=177.15  Aligned_cols=151  Identities=28%  Similarity=0.368  Sum_probs=122.3

Q ss_pred             CccCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcccceeeecCCCCCcEEEEEecCCCceee---CC------
Q 042065           18 LRYGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQ---FP------   88 (179)
Q Consensus        18 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~~~~~~l~~L~l~~~~l~~~---~p------   88 (179)
                      +.+..++|+.||++||+++.+|. .+. +|..    +.++|.|.||+|.   .++|+.|+++++.+.|.   +|      
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-~l~-~W~~----~~~~C~w~gv~C~---~~~v~~L~L~~~~l~g~~~~l~~~l~~L   76 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-LLP-DWSS----NKNPCTFDGVTCR---DDKVTSIDLSSKPLNVGFSAVSSSLLSL   76 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-SST-TCCT----TSCGGGSTTEEEE---TTEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-ccc-CCCC----CCCCcCCcceEEC---CCcEEEEECCCCCcCCccCccChhHhcc
Confidence            33446789999999999999887 777 9973    3478999999997   37999999999998886   43      


Q ss_pred             -----------------ccCcCCCCCcEEEcccCCCCCCChh--HHHhcccCccEEEcccCcCCcccchhc-cCCccCCE
Q 042065           89 -----------------RGIRNCSSMTGLDLSSNKLYGSLPD--DISKLVGFLTGLDLSSNNFSGSIPTNL-ANCSYLNS  148 (179)
Q Consensus        89 -----------------~~l~~l~~L~~L~L~~n~l~g~~p~--~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~  148 (179)
                                       ..+..+++|++|+|++|.++|.+|.  .+.. +++|++|++++|.+.+.+|..+ ..+++|++
T Consensus        77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  155 (768)
T 3rgz_A           77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV  155 (768)
T ss_dssp             TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred             CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence                             4677788889999999998888887  7887 8889999999888888777765 67888888


Q ss_pred             eecccccCcccCchh---hcCCCCCCeEeccCC
Q 042065          149 LKLDHNRFSGQIPPQ---LGQLGRLKSFSVANN  178 (179)
Q Consensus       149 L~l~~n~l~g~~p~~---~~~l~~L~~L~l~~N  178 (179)
                      |++++|++++..|..   +..+++|++|++++|
T Consensus       156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          156 LDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             EECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             EECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            888888888777766   566777777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=6.6e-23  Score=178.78  Aligned_cols=151  Identities=21%  Similarity=0.319  Sum_probs=130.2

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC---CCCCCCccc------------ceeeecCCCCCcEEEEEecCCCce
Q 042065           20 YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNN---DTEGFICKF------------TGVECWHPDENKVLNLRLTDMGLK   84 (179)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~---~~~~~~c~w------------~gv~c~~~~~~~l~~L~l~~~~l~   84 (179)
                      +....|+.||++||+++.+|      +|+.+.   ....+.|.|            .||+|..  .++|+.|+|+++++.
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~--~~~V~~L~Ls~~~L~  336 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN--NGRVTGLSLAGFGAK  336 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT--TSCEEEEECTTTCCE
T ss_pred             ccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC--CCCEEEEECccCCCC
Confidence            44567999999999999766      565432   112234999            9999986  579999999999999


Q ss_pred             eeCCccCcCCCCCcEEEc-ccCCCCCC-----------------------------------------------------
Q 042065           85 GQFPRGIRNCSSMTGLDL-SSNKLYGS-----------------------------------------------------  110 (179)
Q Consensus        85 ~~~p~~l~~l~~L~~L~L-~~n~l~g~-----------------------------------------------------  110 (179)
                      |.+|+.+.++++|+.|+| ++|.++|.                                                     
T Consensus       337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~  416 (876)
T 4ecn_A          337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP  416 (876)
T ss_dssp             EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred             CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence            999999999999999999 77754433                                                     


Q ss_pred             -----------------------ChhHHHhcccCccEEEcccCcCCc-----------------ccchhcc--CCccCCE
Q 042065          111 -----------------------LPDDISKLVGFLTGLDLSSNNFSG-----------------SIPTNLA--NCSYLNS  148 (179)
Q Consensus       111 -----------------------~p~~~~~~l~~L~~L~L~~n~l~g-----------------~~p~~~~--~l~~L~~  148 (179)
                                             +|..+.+ +++|+.|+|++|.++|                 .+|..++  .+++|++
T Consensus       417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~  495 (876)
T 4ecn_A          417 IKKDSRISLKDTQIGNLTNRITFISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD  495 (876)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEEECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred             cccccccchhhceeccccCcccchhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence                                   7888888 9999999999999998                 3999988  9999999


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|++.+.+|..++.+++|+.|++++|+
T Consensus       496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          496 VELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             EEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             EECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            9999999999999999999999999999984

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=1.6e-21  Score=153.12  Aligned_cols=155  Identities=20%  Similarity=0.271  Sum_probs=101.0

Q ss_pred             ccCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCCCCCcccceeeecC-------CCCCcEEEEEecCCCceeeCCcc
Q 042065           19 RYGTKEDIACLKSIKDSL-EDPFNYLNSSWNFNNDTEGFICKFTGVECWH-------PDENKVLNLRLTDMGLKGQFPRG   90 (179)
Q Consensus        19 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~-------~~~~~l~~L~l~~~~l~~~~p~~   90 (179)
                      .....+|..||.+||..+ .++..+.. .|..........|.|.|+.|..       ....+|+.|++++|.+. .+|..
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~-~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~   99 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ   99 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHH-HHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhh-hhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence            345567899999999987 45655666 8853222356889999999951       12356777777777776 56666


Q ss_pred             CcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcC----
Q 042065           91 IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQ----  166 (179)
Q Consensus        91 l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~----  166 (179)
                      +..+++|++|++++|.++ .+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..++.    
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            666777777777777776 66666666 666777777666666 66666666666666666665555555554432    


Q ss_pred             -----CCCCCeEeccCC
Q 042065          167 -----LGRLKSFSVANN  178 (179)
Q Consensus       167 -----l~~L~~L~l~~N  178 (179)
                           +++|++|++++|
T Consensus       177 ~~~~~l~~L~~L~L~~n  193 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWT  193 (328)
T ss_dssp             CCEEESTTCCEEEEEEE
T ss_pred             hhhccCCCCCEEECcCC
Confidence                 455555555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=2.5e-18  Score=125.22  Aligned_cols=125  Identities=22%  Similarity=0.266  Sum_probs=109.5

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCc-cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPR-GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG  124 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~-~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~  124 (179)
                      ..+.|.|..+.|....        ..++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..+.. +++|++
T Consensus         4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~   82 (192)
T 1w8a_A            4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQE   82 (192)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCE
T ss_pred             CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCE
Confidence            3577899999987421        24789999999999865554 4889999999999999999777888888 999999


Q ss_pred             EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |+|++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            9999999997777779999999999999999998889999999999999999984

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=3.5e-18  Score=127.66  Aligned_cols=123  Identities=23%  Similarity=0.287  Sum_probs=99.1

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHH-HhcccCccE
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTG  124 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~-~~~l~~L~~  124 (179)
                      +.+.|.|.++.|....        ..+++.|++++|.+.+..|..|..+++|++|++++|.+. .+|... .. +++|+.
T Consensus        15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~-l~~L~~   92 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDS-LTQLTV   92 (229)
T ss_dssp             TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCE
T ss_pred             CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhccc-CCCcCE
Confidence            4578999999997522        356889999999999877888888999999999999987 666554 45 888999


Q ss_pred             EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |+|++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+
T Consensus        93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred             EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence            999999888554555678888888888888888 778888888888888888774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.8e-17  Score=123.20  Aligned_cols=123  Identities=21%  Similarity=0.295  Sum_probs=69.0

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEE
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGL  125 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L  125 (179)
                      ..+.|.|..+.|....        ..+++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|++|
T Consensus         7 ~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L   85 (220)
T 2v9t_B            7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSL   85 (220)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEE
T ss_pred             CCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEE
Confidence            3456677777775311        134666666666666554545666666666666666665444555555 5566666


Q ss_pred             EcccCcCCcccch-hccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          126 DLSSNNFSGSIPT-NLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       126 ~L~~n~l~g~~p~-~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +|++|.++ .+|. .+..+++|+.|++++|++++..|..+..+++|++|++++|
T Consensus        86 ~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           86 VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence            66666665 3333 3455555555555555555444455555555555555555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=2.2e-17  Score=118.43  Aligned_cols=124  Identities=23%  Similarity=0.257  Sum_probs=102.8

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccE
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTG  124 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~  124 (179)
                      ..+.|.|.++.|....        ..++++|++++|.+.+..+..+..+++|++|++++|.++ .+|.. +.. +++|++
T Consensus         3 ~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~-l~~L~~   80 (177)
T 2o6r_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDK-LTKLTI   80 (177)
T ss_dssp             TTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTT-CTTCCE
T ss_pred             CCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccC-CCccCE
Confidence            3467899999997422        357899999999999766667889999999999999998 55554 456 899999


Q ss_pred             EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus        81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            9999999996655667899999999999999994434446789999999999984

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=2.9e-17  Score=120.63  Aligned_cols=123  Identities=28%  Similarity=0.326  Sum_probs=87.5

Q ss_pred             CCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEE
Q 042065           55 GFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGL  125 (179)
Q Consensus        55 ~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L  125 (179)
                      .+.|.|.++.|....        ..++++|++++|.+.+..+..|..+++|++|++++|.++ .+|.. +.. +++|++|
T Consensus         4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~-l~~L~~L   81 (208)
T 2o6s_A            4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNK-LTSLTYL   81 (208)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTT-CTTCCEE
T ss_pred             CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCC-CCCcCEE
Confidence            467899999997421        246888899888888655556778888888888888887 45444 344 7778888


Q ss_pred             EcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       126 ~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence            888888774444446777777777777777774444446677777777777663

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=5e-17  Score=118.52  Aligned_cols=124  Identities=23%  Similarity=0.255  Sum_probs=104.9

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEE
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGL  125 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L  125 (179)
                      ..+.|.+..+.|....        ..++++|++++|.+. .+|..|..+++|+.|++++|.+++..+..+.. +++|++|
T Consensus         6 ~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~-l~~L~~L   83 (193)
T 2wfh_A            6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN-MTQLLTL   83 (193)
T ss_dssp             TTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEE
T ss_pred             CCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC-CCCCCEE
Confidence            3466788888886421        357899999999998 78889999999999999999999555566777 9999999


Q ss_pred             EcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       126 ~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +|++|.+++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|.
T Consensus        84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            999999997777789999999999999999994434468899999999999984

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=8e-17  Score=119.64  Aligned_cols=108  Identities=17%  Similarity=0.174  Sum_probs=77.5

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..+..+++|+.|+
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            45666777777766655556777777777777777777444444555 77777777777777766667777777888888


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..|..+..+++|+.|++++|.
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            88888876667777777788888887773

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=2.1e-16  Score=132.34  Aligned_cols=108  Identities=21%  Similarity=0.166  Sum_probs=88.4

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..+++|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.. +++|++|+|++|++++..+..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~-L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC-CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            46899999999999777778999999999999999998433445666 89999999999999854445688899999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..+..|+.+++|++|++++|+
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~  159 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNL  159 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCc
Confidence            99999885444568888888888888874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.66  E-value=7.9e-17  Score=125.54  Aligned_cols=108  Identities=27%  Similarity=0.462  Sum_probs=96.8

Q ss_pred             CcEEEEEecC-CCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTD-MGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .++++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            5688999995 8888889999999999999999999998888988888 8999999999999998899999999999999


Q ss_pred             ecccccCcccCchhhcCCC-CCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLG-RLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~-~L~~L~l~~N~  179 (179)
                      ++++|++++.+|..++.++ +|++|++++|+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence            9999999988999998887 89999998873

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=5e-16  Score=115.30  Aligned_cols=109  Identities=20%  Similarity=0.225  Sum_probs=98.0

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..+++.|++++|.+.+..|..|.++++|++|+|++|.++ .+|..++..+++|+.|+|++|.+++..|..+..+++|+.|
T Consensus        55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  133 (220)
T 2v9t_B           55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL  133 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence            367999999999999888999999999999999999999 7776654448999999999999998778899999999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|++++..+..+..+++|+.|++++|.
T Consensus       134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            999999996656678899999999999984

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.65  E-value=4.5e-16  Score=118.67  Aligned_cols=107  Identities=23%  Similarity=0.260  Sum_probs=70.3

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..+++|++++|.+.+..+..|..+++|++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            35778888888877555556777788888888888776 55554432267777777777777744334456666677777


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|++++..|..+..+++|++|++++|
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            7666666444444556666666666655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.65  E-value=1.1e-15  Score=115.36  Aligned_cols=108  Identities=19%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..+..+..+++|+.|+
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            45666666666666555555666667777777777766333333344 66777777777777744334456677777777


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..|..+..+++|++|++++|+
T Consensus       138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence            77777774334456777777777777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.64  E-value=2.7e-16  Score=135.81  Aligned_cols=98  Identities=34%  Similarity=0.501  Sum_probs=59.6

Q ss_pred             CCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCccc
Q 042065           80 DMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ  159 (179)
Q Consensus        80 ~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~  159 (179)
                      .+.+.|.+|..+..+++|+.|++++|.++|.+|..+.. ++.|+.|+|++|.++|.+|..++.+++|+.|++++|+++|.
T Consensus       617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~  695 (768)
T 3rgz_A          617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR  695 (768)
T ss_dssp             SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred             cceecccCchhhhccccccEEECcCCcccccCCHHHhc-cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence            34455555555666666666666666666666666655 56666666666666666666666666666666666666666


Q ss_pred             CchhhcCCCCCCeEeccCC
Q 042065          160 IPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       160 ~p~~~~~l~~L~~L~l~~N  178 (179)
                      +|..+..+++|++|++++|
T Consensus       696 ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          696 IPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CCGGGGGCCCCSEEECCSS
T ss_pred             CChHHhCCCCCCEEECcCC
Confidence            6666666666666666655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=1.9e-15  Score=119.92  Aligned_cols=124  Identities=19%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG  124 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~  124 (179)
                      ..+.|.+..+.|....        ...++.|+|++|.+++..+..+. .+++|+.|+|++|.+++..|..+.. +++|++
T Consensus        14 ~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~~   92 (361)
T 2xot_A           14 ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-VPNLRY   92 (361)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-CTTCCE
T ss_pred             CCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-CCCCCE
Confidence            3455666666665311        23355666666666655555454 5666666666666665333333444 556666


Q ss_pred             EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      |+|++|++++..+..+..+++|+.|++++|++++..|..|..+++|+.|++++|
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence            666666665333334555556666666666555444455555555555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=9.7e-16  Score=127.03  Aligned_cols=107  Identities=22%  Similarity=0.252  Sum_probs=82.5

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..++.+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            46888888888888777777888888888888888887555566666 78888888888888866556678888888888


Q ss_pred             cccccCcc-cCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSG-QIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|++++ ..|..++.+++|++|++++|
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n  133 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNV  133 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCC
Confidence            88888874 34666777778888877766

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.62  E-value=1.1e-15  Score=119.86  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=62.3

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      +++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+.+.+|..++.+++|+.|++
T Consensus       184 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-CCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            3445555555554 45555555666666666666665 45555555 566666666666666666666666666666666


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|++.+.+|..+..+++|++|++++|
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCC
Confidence            666666666666666666666666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=8.7e-16  Score=106.97  Aligned_cols=105  Identities=22%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcc-cchhccCCccCCE
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS-IPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~-~p~~~~~l~~L~~  148 (179)
                      ..+++.|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+++. .|..+..+++|++
T Consensus        41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence            46799999999999865  67889999999999999999768888877 89999999999999952 3478899999999


Q ss_pred             eecccccCcccCc---hhhcCCCCCCeEeccC
Q 042065          149 LKLDHNRFSGQIP---PQLGQLGRLKSFSVAN  177 (179)
Q Consensus       149 L~l~~n~l~g~~p---~~~~~l~~L~~L~l~~  177 (179)
                      |++++|++++..+   ..+..+++|+.|++++
T Consensus       118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999995433   3688899999999864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=4.3e-15  Score=112.06  Aligned_cols=108  Identities=20%  Similarity=0.274  Sum_probs=84.7

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      ..++++|++++|.+.+..+..|..+++|++|++++|.++ .+|.. +.. +++|+.|++++|.+++..+..+..+++|++
T Consensus        82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  159 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDR-LTKLKELRLNTNQLQSIPAGAFDKLTNLQT  159 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhcc-CCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence            357888888888888666667788888888888888888 45544 455 788888888888888554556888888888


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|++++..|..+..+++|+.|++++|.
T Consensus       160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            8888888885555577888888888888874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=3.4e-15  Score=110.82  Aligned_cols=126  Identities=17%  Similarity=0.183  Sum_probs=107.4

Q ss_pred             CCCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCC-ccCcCCCCCcEEEcccCCCCCCChhHHHhcccCcc
Q 042065           53 TEGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFP-RGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLT  123 (179)
Q Consensus        53 ~~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p-~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~  123 (179)
                      ...+.|.|..+.|....        ...++.|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+.. +++|+
T Consensus         6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~   84 (220)
T 2v70_A            6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVN   84 (220)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTTCC
T ss_pred             CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCCCC
Confidence            34577889999987422        2357899999999997755 45789999999999999999555556777 99999


Q ss_pred             EEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          124 GLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       124 ~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +|+|++|.+++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|+
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  140 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence            99999999997777779999999999999999997778899999999999999985

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=5.2e-15  Score=110.38  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=93.3

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      ..+++.|++++|.+....+..|..+++|++|+|++|.++ .+|.. +.. +++|++|++++|.++ .+|..+..+++|++
T Consensus        63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  139 (229)
T 3e6j_A           63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDR-LVHLKELFMCCNKLT-ELPRGIERLTHLTH  139 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred             ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCc-chhhCeEeccCCccc-ccCcccccCCCCCE
Confidence            467999999999997555566789999999999999999 55554 455 899999999999999 89999999999999


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|++++..+..+..+++|+.|++++|.
T Consensus       140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            9999999995445668899999999999984

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1.6e-15  Score=107.62  Aligned_cols=105  Identities=24%  Similarity=0.283  Sum_probs=92.1

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc--hhccCCccCC
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSYLN  147 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~  147 (179)
                      ..+++.|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++ +|  ..+..+++|+
T Consensus        48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~  123 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTHLNLSGNKLKD-ISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCEEECBSSSCCS-SGGGGGGSSCSCCC
T ss_pred             CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCEEeccCCccCc-chhHHHHhcCCCCC
Confidence            35799999999999865  77889999999999999999768888777 8999999999999994 44  7889999999


Q ss_pred             EeecccccCcccCch----hhcCCCCCCeEeccCCC
Q 042065          148 SLKLDHNRFSGQIPP----QLGQLGRLKSFSVANNL  179 (179)
Q Consensus       148 ~L~l~~n~l~g~~p~----~~~~l~~L~~L~l~~N~  179 (179)
                      +|++++|+++ .+|.    .+..+++|++|++++|.
T Consensus       124 ~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          124 SLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCC
Confidence            9999999999 4554    78899999999998874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.59  E-value=2.8e-15  Score=121.61  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=78.0

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChh-HHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPD-DISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .++++|++++|.+.+..|..|..+++|++|++++|.+.+.++. .+.. +++|++|++++|.+++..|..++.+++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-LSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT-CTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccc-cccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            5688888888888877777788888888888888877656643 3444 7777888887777776667777777777777


Q ss_pred             ecccccCcccCchh--hcCCCCCCeEeccCC
Q 042065          150 KLDHNRFSGQIPPQ--LGQLGRLKSFSVANN  178 (179)
Q Consensus       150 ~l~~n~l~g~~p~~--~~~l~~L~~L~l~~N  178 (179)
                      ++++|++++.+|..  +..+++|++|++++|
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  139 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN  139 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCC
Confidence            77777776545444  666677777777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=6.8e-15  Score=105.03  Aligned_cols=99  Identities=22%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             EEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeeccccc
Q 042065           76 LRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNR  155 (179)
Q Consensus        76 L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~  155 (179)
                      ++++++.++ .+|..+  .+.|++|++++|.+++..|..+.. +++|++|+|++|++++..|..+..+++|++|++++|+
T Consensus        14 l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           14 VDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDR-LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcC-cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            334444444 244333  245555555555555333444444 5555555555555553333334555555555555555


Q ss_pred             CcccCchhhcCCCCCCeEeccCC
Q 042065          156 FSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       156 l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++..|..+..+++|++|++++|
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCC
Confidence            55322233555555555555555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.58  E-value=4.9e-15  Score=116.84  Aligned_cols=121  Identities=25%  Similarity=0.332  Sum_probs=91.3

Q ss_pred             CCCcccceeeecCCC----------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065           55 GFICKFTGVECWHPD----------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG  124 (179)
Q Consensus        55 ~~~c~w~gv~c~~~~----------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~  124 (179)
                      ...|.|.++ |+...          ..++++|++++|.+++..+..+.++++|++|++++|.+++..|..+.. +++|++
T Consensus        27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~  104 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEH  104 (353)
T ss_dssp             CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCE
T ss_pred             CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCE
Confidence            467888776 54211          246888999999888666667888888888888888888555666766 788888


Q ss_pred             EEcccCcCCcccchhccCCccCCEeecccccCcccCch--hhcCCCCCCeEeccCC
Q 042065          125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPP--QLGQLGRLKSFSVANN  178 (179)
Q Consensus       125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~l~~N  178 (179)
                      |++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEES
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCC
Confidence            888888888433334788888888888888888 5665  6777888888888776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.58  E-value=5.2e-15  Score=114.41  Aligned_cols=123  Identities=21%  Similarity=0.226  Sum_probs=90.8

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC--CCChhHHHhcccCcc
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY--GSLPDDISKLVGFLT  123 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~--g~~p~~~~~~l~~L~  123 (179)
                      ..+.|.|.++.|....        ..++++|++++|.+....+..|..+++|++|++++|.++  +..|..+.. +++|+
T Consensus         3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~   81 (306)
T 2z66_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLK   81 (306)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCC
T ss_pred             CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccC
Confidence            3467999999997522        257999999999998443445789999999999999987  223667766 78888


Q ss_pred             EEEcccCcCCcccchhccCCccCCEeecccccCcccCc-hhhcCCCCCCeEeccCC
Q 042065          124 GLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIP-PQLGQLGRLKSFSVANN  178 (179)
Q Consensus       124 ~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N  178 (179)
                      +|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus        82 ~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  136 (306)
T 2z66_A           82 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  136 (306)
T ss_dssp             EEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence            8888888877 567667777777777777777763322 35666666777776665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.58  E-value=8.2e-15  Score=122.87  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      ++++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..++.+++|++|++
T Consensus        57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            3444444444444444444445555555555555554333444444 455555555555554333344555555555555


Q ss_pred             ccccCcc-cCchhhcCCCCCCeEeccCC
Q 042065          152 DHNRFSG-QIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       152 ~~n~l~g-~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|.+++ .+|..++.+++|++|++++|
T Consensus       136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             CSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             CCCcccceechHhHhhcCCCCEEEccCC
Confidence            5555553 35666666666666666665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=1.2e-14  Score=103.04  Aligned_cols=106  Identities=24%  Similarity=0.264  Sum_probs=94.3

Q ss_pred             CCcEEEEEecCCCce-eeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           70 ENKVLNLRLTDMGLK-GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~-~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      ..+++.|++++|.+. +.+|..+..+++|++|++++|.+++ + ..+.. +++|++|++++|.+++.+|..+..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            367999999999998 7888888999999999999999984 4 56666 899999999999999778888888999999


Q ss_pred             eecccccCcccCc--hhhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSGQIP--PQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p--~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|+++ .+|  ..+..+++|++|++++|+
T Consensus       100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSG
T ss_pred             EeccCCccC-cchhHHHHhcCCCCCEEEeeCCc
Confidence            999999999 454  788999999999999984

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.57  E-value=1.1e-14  Score=106.77  Aligned_cols=108  Identities=23%  Similarity=0.253  Sum_probs=91.8

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      ..++++|++++|.+.+..+..|..+++|++|++++|.++ .+|.. +.. +++|++|++++|.+++..+..+..+++|++
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  128 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDK-LTQLKELALNTNQLQSLPDGVFDKLTQLKD  128 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcC-ccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence            467999999999999665666789999999999999998 55544 456 899999999999999655556889999999


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|++++..+..+..+++|++|++++|.
T Consensus       129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             EECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            9999999995545558899999999999984

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.57  E-value=1.4e-14  Score=110.96  Aligned_cols=108  Identities=21%  Similarity=0.193  Sum_probs=70.4

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCC-CCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK-LYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .++++|++++|.+.+..|..|..+++|++|++++|. +....|..+.. +++|++|++++|.+++..|..+..+++|++|
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC-CcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            456666666666665556666667777777777775 55333445555 6677777777777775556666677777777


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|++++..+..+..+++|++|++++|+
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            777777774434446677777777777663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=119.02  Aligned_cols=106  Identities=21%  Similarity=0.181  Sum_probs=58.6

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      +++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+.. +++|++|+|++|.++...+..+..+++|++|++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            4556666666666555555666666666666666665444555555 555666666666555322223455555555555


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|++++..|..+..+++|++|++++|
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred             CCCccccCChhHccccccCCEEECCCC
Confidence            555555444445555555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.56  E-value=1.1e-14  Score=106.09  Aligned_cols=105  Identities=18%  Similarity=0.230  Sum_probs=87.7

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCc-CCcccchhccCCccCCE
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN-FSGSIPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~  148 (179)
                      ..++++|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|++++|. ++ .+| .+..+++|+.
T Consensus        87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~  163 (197)
T 4ezg_A           87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT-DIM-PLKTLPELKS  163 (197)
T ss_dssp             CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred             CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence            357888999999888777888888999999999999998777888887 8899999999998 55 666 6888899999


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|+++ .++ .+..+++|++|++++|+
T Consensus       164 L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          164 LNIQFDGVH-DYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECTTBCCC-CCT-TGGGCSSCCEEEECBC-
T ss_pred             EECCCCCCc-ChH-HhccCCCCCEEEeeCcc
Confidence            999999988 455 77888999999998884

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.56  E-value=1.4e-14  Score=110.57  Aligned_cols=106  Identities=22%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      ++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +++|+.|++++|.+++..+..+..+++|++|++
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-CccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence            3444444444444333333444444444444444444222222233 444555555555555333333444555555555


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|++++..|..+..+++|+.|++++|
T Consensus       189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          189 YQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            555555433333455555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=1.9e-14  Score=103.14  Aligned_cols=101  Identities=22%  Similarity=0.281  Sum_probs=72.8

Q ss_pred             EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeeccc
Q 042065           74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDH  153 (179)
Q Consensus        74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~  153 (179)
                      +.++++++.+. .+|..+.  +.|++|++++|.+++..|..+.. +++|+.|+|++|++++..+..+..+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDH-LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcC-CcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45677777775 5666553  77888888888887555666666 77888888888888843333457788888888888


Q ss_pred             ccCcccCch-hhcCCCCCCeEeccCCC
Q 042065          154 NRFSGQIPP-QLGQLGRLKSFSVANNL  179 (179)
Q Consensus       154 n~l~g~~p~-~~~~l~~L~~L~l~~N~  179 (179)
                      |+++ .+|. .+..+++|++|++++|.
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCC
Confidence            8888 4444 47778888888888774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.56  E-value=2.2e-14  Score=112.18  Aligned_cols=122  Identities=21%  Similarity=0.262  Sum_probs=102.4

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEE
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGL  125 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L  125 (179)
                      .++.|.|..+.|....        ..+++.|++++|.+.+..|..|.++++|++|++++|.+++..|..+.. +++|++|
T Consensus        29 ~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L  107 (332)
T 2ft3_A           29 FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKL  107 (332)
T ss_dssp             SSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEE
T ss_pred             CCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEE
Confidence            3456889999997422        247899999999999877888999999999999999999666888888 8999999


Q ss_pred             EcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       126 ~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|.++ .+|..+.  ++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus       108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence            99999999 7787665  789999999999985444568889999999998874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.56  E-value=1.5e-14  Score=110.32  Aligned_cols=109  Identities=20%  Similarity=0.167  Sum_probs=94.6

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..|..+..+++|+.|
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence            467999999999999777777899999999999999999554555666 8999999999999996666667899999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|++++..|..+..+++|++|++++|+
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            999999996656667899999999999985

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1.6e-14  Score=100.51  Aligned_cols=106  Identities=24%  Similarity=0.294  Sum_probs=94.6

Q ss_pred             CcEEEEEecCCCce-eeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLK-GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~-~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .+++.|++++|.+. +.+|..+..+++|++|++++|.+++ + ..+.. +++|+.|++++|.+++.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPK-LNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCC-CTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhc-CCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            57899999999998 7889888999999999999999984 4 56666 8999999999999997788888889999999


Q ss_pred             ecccccCccc-CchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQ-IPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~-~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|++++. .|..+..+++|++|++++|+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            9999999952 34889999999999999984

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=2.7e-14  Score=116.18  Aligned_cols=123  Identities=16%  Similarity=0.156  Sum_probs=98.1

Q ss_pred             CCCcc--cceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065           55 GFICK--FTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG  124 (179)
Q Consensus        55 ~~~c~--w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~  124 (179)
                      .+.|.  |..+.|....        ..+++.|++++|.+.+..+..|.++++|+.|++++|.+++..|..+.. +++|++
T Consensus        49 ~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~  127 (452)
T 3zyi_A           49 VCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNT  127 (452)
T ss_dssp             TSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCE
T ss_pred             CCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC-cccCCE
Confidence            34454  4678886422        257899999999999888889999999999999999999666677777 899999


Q ss_pred             EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      |+|++|.+++..+..+..+++|++|++++|+++...+..+..+++|+.|++++|
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~  181 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL  181 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence            999999999555556888999999999999998444446667777777777664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.54  E-value=2.7e-14  Score=108.85  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=76.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|+.|++++|.+.+..+..+..+++|++|+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-CccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            45677777777776555556777777777777777776444455555 67777777777777754444677778888888


Q ss_pred             cccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSG-QIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++ .+|..+..+++|++|++++|+
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCC
Confidence            88888874 357788888888888888774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.54  E-value=1.9e-14  Score=120.69  Aligned_cols=108  Identities=20%  Similarity=0.078  Sum_probs=90.8

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..+++|++++|.+++..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++|.+++..|..++.+++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChhhhcccccccEee
Confidence            56889999999998877888999999999999999988666777777 88899999999998877788888888888888


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..|..++.+++|++|++++|+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~  140 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNH  140 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCc
Confidence            88888885446677788888888888774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.54  E-value=1.6e-14  Score=117.17  Aligned_cols=108  Identities=19%  Similarity=0.156  Sum_probs=79.5

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..+..+++|++|+
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-LDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC-cccCCEEECCCCcccccChhhccccccccEEE
Confidence            46777777777777766777777777888888888777555666666 77788888888888766677777788888888


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..+..+..+++|++|++++|.
T Consensus       378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccccCCHhHhccCCcccEEEccCCC
Confidence            88888874333445677888888887774

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.54  E-value=1.2e-14  Score=113.07  Aligned_cols=107  Identities=15%  Similarity=0.154  Sum_probs=88.8

Q ss_pred             CcEEEEEecCCCceeeCCccC--cCCCCCcEEEcccCCCCCCChhHHHhcc-----cCccEEEcccCcCCcccchhccCC
Q 042065           71 NKVLNLRLTDMGLKGQFPRGI--RNCSSMTGLDLSSNKLYGSLPDDISKLV-----GFLTGLDLSSNNFSGSIPTNLANC  143 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l--~~l~~L~~L~L~~n~l~g~~p~~~~~~l-----~~L~~L~L~~n~l~g~~p~~~~~l  143 (179)
                      .++++|++++|.+.+.+|..+  ..+++|++|++++|.+++. |..+.. +     ++|++|++++|.+++..|..++.+
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            578899999999988888876  7889999999999999855 877776 5     889999999999987666888889


Q ss_pred             ccCCEeecccccCccc--Cchhh--cCCCCCCeEeccCCC
Q 042065          144 SYLNSLKLDHNRFSGQ--IPPQL--GQLGRLKSFSVANNL  179 (179)
Q Consensus       144 ~~L~~L~l~~n~l~g~--~p~~~--~~l~~L~~L~l~~N~  179 (179)
                      ++|++|++++|++.+.  +|..+  ..+++|++|++++|+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence            9999999999988765  34455  778888888888874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.53  E-value=3e-14  Score=109.15  Aligned_cols=105  Identities=28%  Similarity=0.310  Sum_probs=40.8

Q ss_pred             EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065           73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD  152 (179)
Q Consensus        73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~  152 (179)
                      +++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            444444444444333333444444444444444443211122222 3444444444444442222223334444444444


Q ss_pred             cccCcccCchhhcCCCCCCeEeccCC
Q 042065          153 HNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       153 ~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +|.+++..|..+..+++|+.|++++|
T Consensus       186 ~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          186 QNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcccccCHhHccCcccccEeeCCCC
Confidence            44444333333444444444444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.53  E-value=5.9e-14  Score=109.59  Aligned_cols=120  Identities=18%  Similarity=0.256  Sum_probs=89.5

Q ss_pred             CCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEE
Q 042065           55 GFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLD  126 (179)
Q Consensus        55 ~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~  126 (179)
                      .+.|.+..+.|....        ...++.|++++|.+++..+..|.++++|++|++++|.+++..|..+.. +++|++|+
T Consensus        28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~  106 (330)
T 1xku_A           28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY  106 (330)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred             CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence            466889999987421        356889999999999776768999999999999999998666888887 88999999


Q ss_pred             cccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          127 LSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       127 L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|.++ .+|..+.  ++|++|++++|++++..+..+..+++|++|++++|
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  155 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN  155 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC
Confidence            9999888 6665543  56666666666666444444555666666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=1.8e-14  Score=120.69  Aligned_cols=102  Identities=27%  Similarity=0.305  Sum_probs=77.8

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      .++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.. +++|+.|+|++|.+++ +| .++.+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc-CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            36678888887774 565 777788888888888887 77777777 7788888888888874 66 6777888888888


Q ss_pred             ccccCcccC-chhhcCCCCCCeEeccCCC
Q 042065          152 DHNRFSGQI-PPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       152 ~~n~l~g~~-p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++|++++.. |..++.+++|+.|++++|+
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            888887554 7777788888888887773

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=1.1e-14  Score=125.12  Aligned_cols=104  Identities=28%  Similarity=0.402  Sum_probs=96.2

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..++.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.. +++|++|+|++|.++ .+|..++.+++|++|+
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            56888999999988 78888889999999999999998 99998988 999999999999999 8899999999999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++|.++ .+|..|+.+++|++|+|++|+
T Consensus       300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence            9999998 899999999999999999985

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.53  E-value=7.3e-15  Score=124.51  Aligned_cols=108  Identities=12%  Similarity=0.216  Sum_probs=88.8

Q ss_pred             CCcEEEEEecCCCceee-----------------CCccCc--CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccC
Q 042065           70 ENKVLNLRLTDMGLKGQ-----------------FPRGIR--NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN  130 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n  130 (179)
                      ..++++|++++|.+.+.                 +|..+.  ++++|++|++++|.+.|.+|..+.+ +++|++|++++|
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n  283 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCC
Confidence            45788888888888875                 888888  8888888888888888888888887 888888888888


Q ss_pred             c-CCc-ccchhccCC------ccCCEeecccccCcccCch--hhcCCCCCCeEeccCCC
Q 042065          131 N-FSG-SIPTNLANC------SYLNSLKLDHNRFSGQIPP--QLGQLGRLKSFSVANNL  179 (179)
Q Consensus       131 ~-l~g-~~p~~~~~l------~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~l~~N~  179 (179)
                      + ++| .+|..++.+      ++|++|++++|+++ .+|.  .++.+++|++|++++|+
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence            7 887 788877765      78888888888888 7887  78888888888888774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.53  E-value=3.1e-14  Score=119.33  Aligned_cols=108  Identities=23%  Similarity=0.211  Sum_probs=95.4

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..++++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            57899999999999887878999999999999999998656777777 89999999999999977788999999999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..|..++.+++|++|++++|+
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  139 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNF  139 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCc
Confidence            99999986555789999999999999884

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=2.8e-14  Score=113.09  Aligned_cols=108  Identities=23%  Similarity=0.186  Sum_probs=92.2

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..+++.|++++|.+.+..+..|..+++|++|+|++|.+++..+..+.. +++|+.|+|++|.+++..|..+..+++|+.|
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC-CcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            467999999999999877788999999999999999998444445556 8999999999999997778889999999999


Q ss_pred             ecccccCcccCchhh----cCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQL----GQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~----~~l~~L~~L~l~~N~  179 (179)
                      ++++|+++ .+|..+    ..+++|+.|++++|+
T Consensus       142 ~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             ECCSSCCC-SCCGGGTC----CTTCCEEECCSSC
T ss_pred             ECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCC
Confidence            99999999 577664    568999999999985

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=3.6e-14  Score=108.21  Aligned_cols=106  Identities=20%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCc-ccchhccCCccCCEee
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSYLNSLK  150 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~  150 (179)
                      ++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.. +++|++|++++|.+++ .+|..+..+++|++|+
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhccc-CCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence            4555555555555444444555555555555555554222223333 4555555555555543 2345555555555555


Q ss_pred             cccccCcccCchhhcCCCCCC----eEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLK----SFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~----~L~l~~N  178 (179)
                      +++|++++..+..+..+++|+    .|++++|
T Consensus       156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             CCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            555555533333343333333    4455444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.52  E-value=5.2e-14  Score=119.53  Aligned_cols=106  Identities=23%  Similarity=0.289  Sum_probs=73.6

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch-hccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L  149 (179)
                      .++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|. .++.+++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence            46777788877777655556777777777777777777666666666 777777777777777 3443 46777777777


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++++|++++..|..++.+++|++|++++|
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCC
Confidence            77777776444456666677777777665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=5.3e-14  Score=102.19  Aligned_cols=102  Identities=26%  Similarity=0.363  Sum_probs=89.0

Q ss_pred             EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065           74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD  152 (179)
Q Consensus        74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~  152 (179)
                      +.+++++++++ .+|..+.  ..+++|++++|.+++..+.. +.. +++|++|++++|.+++..|..+..+++|+.|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            67899999996 6787654  38999999999998444433 666 9999999999999998888999999999999999


Q ss_pred             cccCcccCchhhcCCCCCCeEeccCCC
Q 042065          153 HNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +|++++..|..+..+++|++|++++|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            999997777779999999999999985

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=4.6e-14  Score=102.72  Aligned_cols=101  Identities=31%  Similarity=0.400  Sum_probs=89.9

Q ss_pred             EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeeccc
Q 042065           74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDH  153 (179)
Q Consensus        74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~  153 (179)
                      +.+++++++++ .+|..+  .+.|+.|++++|.++ .+|..+.. +++|+.|++++|.+++..+..|..+++|+.|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            46899999988 677655  368999999999998 89988888 99999999999999976667899999999999999


Q ss_pred             ccCcccCchhhcCCCCCCeEeccCCC
Q 042065          154 NRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       154 n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++..|..|..+++|++|++++|+
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCC
Confidence            99997667789999999999999985

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.52  E-value=9.5e-14  Score=112.61  Aligned_cols=123  Identities=16%  Similarity=0.175  Sum_probs=96.0

Q ss_pred             CCCcc--cceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065           55 GFICK--FTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG  124 (179)
Q Consensus        55 ~~~c~--w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~  124 (179)
                      .+.|.  +..+.|....        ...++.|++++|.+.+..+..|.++++|++|+|++|.+++..+..+.. +++|++
T Consensus        38 ~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~  116 (440)
T 3zyj_A           38 VCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNT  116 (440)
T ss_dssp             SSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT-CSSCCE
T ss_pred             CCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC-CccCCE
Confidence            34454  5678886422        256889999999999888888999999999999999998555566666 899999


Q ss_pred             EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      |+|++|+++...+..+..+++|+.|++++|+++...+..+..+++|++|++++|
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~  170 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL  170 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence            999999999544456888999999999999988544456777777777777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.52  E-value=2.6e-14  Score=124.55  Aligned_cols=107  Identities=18%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCC-hhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSL-PDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~-p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .+++.|++++|.+.+..|..|.++++|++|++++|.+.+.+ |..+.. +++|+.|+|++|.+.+..|..+..+++|++|
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-LPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-CTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-CCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            55666777766666555555666666666666665444444 333444 5555555555555554445555555555555


Q ss_pred             ecccccCcccCchh--hcCCCCCCeEeccCC
Q 042065          150 KLDHNRFSGQIPPQ--LGQLGRLKSFSVANN  178 (179)
Q Consensus       150 ~l~~n~l~g~~p~~--~~~l~~L~~L~l~~N  178 (179)
                      ++++|.+++.+|..  +..+++|++|++++|
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKN  133 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCC
Confidence            55555555444433  445555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=5.2e-14  Score=100.41  Aligned_cols=104  Identities=25%  Similarity=0.286  Sum_probs=87.2

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHH-HhcccCccE
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTG  124 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~-~~~l~~L~~  124 (179)
                      ..+.|.|..+.|....        ..+++.|++++|.+++..|..|..+++|++|++++|.++ .+|... .. +++|++
T Consensus         5 ~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~-l~~L~~   82 (170)
T 3g39_A            5 SQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDK-LTQLTQ   82 (170)
T ss_dssp             -CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTT-CTTCCE
T ss_pred             CcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccC-CCCCCE
Confidence            3467888888886421        357899999999999887888999999999999999999 566554 55 899999


Q ss_pred             EEcccCcCCcccchhccCCccCCEeecccccCccc
Q 042065          125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ  159 (179)
Q Consensus       125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~  159 (179)
                      |+|++|++++..+..+..+++|++|++++|+++..
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99999999965555689999999999999999744

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.51  E-value=5e-14  Score=117.95  Aligned_cols=108  Identities=19%  Similarity=0.216  Sum_probs=94.8

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      ..++++|+|++|.+++..+..|.++++|++|+|++|.++ .+|.. +.. +++|++|++++|++++..+..++++++|++
T Consensus        75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~-L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~  152 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKE  152 (635)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTT-CTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcC-CCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence            367999999999999777778999999999999999998 56654 555 999999999999999655557999999999


Q ss_pred             eecccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSG-QIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|++++ .+|..++.+++|++|++++|+
T Consensus       153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             eccccCccccCCCchhhccchhhhhhcccCcc
Confidence            9999999974 468889999999999999984

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.51  E-value=4.2e-14  Score=109.25  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=77.7

Q ss_pred             CcEEEEEecCCCcee-eCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKG-QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~-~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .++++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+.. +++|+.|++++|.+++..+..+..+++|+.|
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC-CCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            457777777777665 45666777777777777777777555666666 7777888888777775545567777788888


Q ss_pred             ecccccCcccCchhhcCCC-CCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLG-RLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~-~L~~L~l~~N~  179 (179)
                      ++++|++++..|..+..++ +|++|++++|.
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            8888888777777777774 78888887774

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=4.5e-14  Score=101.03  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=90.6

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHH-HhcccCccEEEcccCcCCcccch--hccCCccCC
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTGLDLSSNNFSGSIPT--NLANCSYLN  147 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~-~~~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L~  147 (179)
                      .+++.|++++|.+.+.  +.+..+++|++|++++|.++ .+|..+ .. +++|+.|++++|.++ .+|.  .+..+++|+
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~-l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQA-LPDLTELILTNNSLV-ELGDLDPLASLKSLT  116 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHH-CTTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhc-CCCCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence            3799999999999865  67889999999999999998 566555 66 999999999999997 7776  788999999


Q ss_pred             EeecccccCcccCchh----hcCCCCCCeEeccCCC
Q 042065          148 SLKLDHNRFSGQIPPQ----LGQLGRLKSFSVANNL  179 (179)
Q Consensus       148 ~L~l~~n~l~g~~p~~----~~~l~~L~~L~l~~N~  179 (179)
                      .|++++|+++ .+|..    +..+++|+.||+++|.
T Consensus       117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999999998 67775    8899999999998874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.51  E-value=6e-14  Score=102.14  Aligned_cols=104  Identities=22%  Similarity=0.261  Sum_probs=77.8

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.  .++.+..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..|..+..+++|++|+
T Consensus        66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-CCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            46778888877554  3346777888888888888887656666666 77888888888888876777778888888888


Q ss_pred             ccccc-CcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNR-FSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~-l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|. ++ .+| .+..+++|++|++++|+
T Consensus       143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             CCSCTBCC-CCG-GGGGCSSCCEEECTTBC
T ss_pred             ccCCCCcc-ccH-hhcCCCCCCEEECCCCC
Confidence            88887 44 565 57778888888887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.51  E-value=8.8e-14  Score=105.90  Aligned_cols=60  Identities=23%  Similarity=0.300  Sum_probs=24.5

Q ss_pred             ccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          119 VGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       119 l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus       156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            344444444444444222223344444444444444444222222344444444444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.50  E-value=8e-14  Score=107.52  Aligned_cols=102  Identities=24%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccch-hccCCccCCEee
Q 042065           73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSLK  150 (179)
Q Consensus        73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~  150 (179)
                      +++|++++|.+++..+..|..+++|++|++++|.++ .+|.. +.. +++|+.|++++|+++ .+|. .+..+++|+.|+
T Consensus       102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G          102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP-TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTT-CTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhccc-ccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEE
Confidence            444444444444333333444444444444444444 22222 222 444444444444444 2222 233444444444


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|+++ .+|..+..+.+|+.+++++|
T Consensus       179 L~~N~l~-~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          179 LQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             CCCCcCC-ccChhhcccccCCeEEeCCC
Confidence            4444444 44444444444455554444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=7.7e-14  Score=109.66  Aligned_cols=106  Identities=17%  Similarity=0.198  Sum_probs=79.4

Q ss_pred             CcccceeeecCCCCCcEEEEEecCC-CceeeCCccCcCCCCCcEEEccc-CCCCCCChhHHHhcccCccEEEcccCcCCc
Q 042065           57 ICKFTGVECWHPDENKVLNLRLTDM-GLKGQFPRGIRNCSSMTGLDLSS-NKLYGSLPDDISKLVGFLTGLDLSSNNFSG  134 (179)
Q Consensus        57 ~c~w~gv~c~~~~~~~l~~L~l~~~-~l~~~~p~~l~~l~~L~~L~L~~-n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g  134 (179)
                      .|.|..+.|.             ++ +++ .+|. +..+++|+.|+|++ |.+++..|..+.. +++|+.|+|++|++++
T Consensus         7 ~C~~~~v~~~-------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~-l~~L~~L~l~~N~l~~   70 (347)
T 2ifg_A            7 PHGSSGLRCT-------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRF   70 (347)
T ss_dssp             CSSSSCEECC-------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS-CCCCSEEECCSSCCCE
T ss_pred             cccCCEEEcC-------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc-ccCCCEEECCCCccce
Confidence            5777766664             33 555 4777 88888899999986 8888444456666 8889999999999887


Q ss_pred             ccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          135 SIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       135 ~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ..|..|..+++|+.|+|++|+|+ .+|..+.....|+.|++.+|.
T Consensus        71 ~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           71 VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSC
T ss_pred             eCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCCceEEEeeCCC
Confidence            77778888899999999999988 455544333338888888874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=1.2e-14  Score=125.10  Aligned_cols=150  Identities=23%  Similarity=0.264  Sum_probs=91.9

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCcccceeeecCCCCCcEEE------------------EEecCC
Q 042065           20 YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLN------------------LRLTDM   81 (179)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~w~gv~c~~~~~~~l~~------------------L~l~~~   81 (179)
                      .....+..++.+++..+..+.+.....|...   ....+.|.+..+..   ++++.                  ++|+.+
T Consensus       128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~---~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~  201 (727)
T 4b8c_D          128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGD---STPSGTATNSAVST---PLTPKIELFANGKDEANQALLQHKKLSQY  201 (727)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred             hccccchhhhhhhhhhcccccCcccCCCcCC---CCccccCCCceecC---CccceEEeeCCCCCcchhhHhhcCccCcc
Confidence            3445667888888877643322222245322   12345565555443   22333                  333443


Q ss_pred             Ccee---------eCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065           82 GLKG---------QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD  152 (179)
Q Consensus        82 ~l~~---------~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~  152 (179)
                      .+.+         ..+..+..++.|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..++.+++|++|+|+
T Consensus       202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls  278 (727)
T 4b8c_D          202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS  278 (727)
T ss_dssp             --------------------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred             cccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence            3332         23566888999999999999998 89999998 999999999999999 899999999999999999


Q ss_pred             cccCcccCchhhcCCCCCCeEeccCCC
Q 042065          153 HNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +|.|+ .+|..++.+++|++|+|++|+
T Consensus       279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          279 HNRLT-SLPAELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             TSCCS-SCCSSGGGGTTCSEEECCSSC
T ss_pred             CCcCC-ccChhhcCCCCCCEEECCCCC
Confidence            99999 899999999999999999984

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.49  E-value=1.2e-13  Score=106.43  Aligned_cols=107  Identities=24%  Similarity=0.280  Sum_probs=92.7

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..++++|++++|.+. .+|..+..+++|++|++++|.+++..|..+.. +++|+.|++++|++++..+..+..+++|+.|
T Consensus        76 l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            467999999999998 78888999999999999999999444456666 8999999999999996555567899999999


Q ss_pred             ecccccCcccCch-hhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPP-QLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~-~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|+++ .+|. .+..+++|++|++++|+
T Consensus       154 ~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          154 SLANNNLT-ELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             ECTTSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCC-ccCHHHhcCcCCCCEEECCCCc
Confidence            99999999 5655 46789999999999985

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.49  E-value=2.2e-14  Score=118.27  Aligned_cols=105  Identities=22%  Similarity=0.217  Sum_probs=74.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.. +++|++|++++|+++ .+|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            46777777777777655566777777777777777777555666666 777777777777777 56665  677777777


Q ss_pred             cccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSG-QIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++ .+|..++.+++|++|++++|+
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcc
Confidence            77777775 456777777777777777663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=2.5e-14  Score=124.92  Aligned_cols=108  Identities=15%  Similarity=0.222  Sum_probs=90.9

Q ss_pred             CCcEEEEEecCCCcee-----------------eCCccCc--CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccC
Q 042065           70 ENKVLNLRLTDMGLKG-----------------QFPRGIR--NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN  130 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~-----------------~~p~~l~--~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n  130 (179)
                      ..+++.|+|++|.+.+                 .+|..+.  ++++|++|+|++|.+.+.+|..+.+ +++|+.|++++|
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N  525 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACN  525 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTC
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCC
Confidence            4678899999999887                 3888877  8899999999999888888988888 888999999998


Q ss_pred             c-CCc-ccchhccCCc-------cCCEeecccccCcccCch--hhcCCCCCCeEeccCCC
Q 042065          131 N-FSG-SIPTNLANCS-------YLNSLKLDHNRFSGQIPP--QLGQLGRLKSFSVANNL  179 (179)
Q Consensus       131 ~-l~g-~~p~~~~~l~-------~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~l~~N~  179 (179)
                      + ++| .+|..++.++       +|+.|++++|+++ .+|.  .++.+++|+.|++++|+
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence            7 887 7887766655       8888888888888 8888  88888888888888874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.48  E-value=1.3e-13  Score=115.90  Aligned_cols=107  Identities=21%  Similarity=0.245  Sum_probs=87.8

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch-hccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L  149 (179)
                      .+++.|++++|.+.+..|..|..+++|+.|+|++|.+++..|..+.. +++|++|+|++|.++ .+|. .+..+++|++|
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC-CCCCCEEEeeCCCCC-CCCHHHhccCCCCCEE
Confidence            45778888888888777778888999999999999988655555666 888999999999988 4554 46888999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|.+++..|..++.+++|++|++++|+
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            999999987777788888999999998874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.47  E-value=7.4e-14  Score=116.44  Aligned_cols=105  Identities=21%  Similarity=0.178  Sum_probs=89.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            57899999999998766778999999999999999998666777777 889999999999998 78876  789999999


Q ss_pred             cccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSG-QIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++ .+|..++.+++|++|++++|+
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCc
Confidence            99999985 356789999999999998874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.47  E-value=1.9e-13  Score=109.04  Aligned_cols=107  Identities=21%  Similarity=0.255  Sum_probs=80.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchh-ccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L~~L  149 (179)
                      .++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|.. +..+++|++|
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC-CCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence            45677777777777666667788888888888888887555555666 788888888888888 55554 5778888888


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|++++..|..+..+++|++|++++|+
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCc
Confidence            888888886556667788888888888774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.46  E-value=1.5e-13  Score=102.76  Aligned_cols=104  Identities=15%  Similarity=0.221  Sum_probs=72.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCC-CCCCChh-HHHhcccCccEEEccc-CcCCcccchhccCCccCC
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK-LYGSLPD-DISKLVGFLTGLDLSS-NNFSGSIPTNLANCSYLN  147 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~g~~p~-~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~  147 (179)
                      .++++|++++|.+++..+..|..+++|++|++++|. ++ .+|. .+.. +++|++|++++ |.+++..+..+..+++|+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~-l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEES-CTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCC-CcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            367888888888876666677778888888888886 66 4554 4444 77788888887 777744445677777788


Q ss_pred             EeecccccCcccCchhhcCCCCCC---eEeccCC
Q 042065          148 SLKLDHNRFSGQIPPQLGQLGRLK---SFSVANN  178 (179)
Q Consensus       148 ~L~l~~n~l~g~~p~~~~~l~~L~---~L~l~~N  178 (179)
                      +|++++|++++ +|. +..+++|+   +|++++|
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred             EEeCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence            88877777773 665 55666665   6666665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.46  E-value=1.8e-13  Score=111.82  Aligned_cols=108  Identities=20%  Similarity=0.209  Sum_probs=83.5

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      ..++++|++++|.+.+..|..|.++++|++|++++|.++ .+|.. +.. +++|++|++++|.+.+..|..+..+++|+.
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccC-CCCCCEEECCCCccccCChhHccccccCCE
Confidence            357888888888888777888888888888888888887 55544 445 788888888888888666777777888888


Q ss_pred             eecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|++++..|..+..+++|+.|++++|+
T Consensus       133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCN  163 (477)
T ss_dssp             EEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred             EECCCCccceeChhhccCCCCCCEEECCCCc
Confidence            8888888776666677777777777777663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.45  E-value=9.7e-14  Score=115.32  Aligned_cols=108  Identities=22%  Similarity=0.262  Sum_probs=75.0

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC-CCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY-GSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~-g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .++++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+.. +++|+.|++++|.+++..|..+..+++|+.|
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc-ccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            45666666666666666666666777777777777765 456666666 6777777777777776657777777777777


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|++++..|..+..+++|+.|++++|.
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            777777775555566777777777777763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.45  E-value=1.6e-13  Score=113.04  Aligned_cols=116  Identities=18%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             cccceeeecCCCCCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc
Q 042065           58 CKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP  137 (179)
Q Consensus        58 c~w~gv~c~~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p  137 (179)
                      |.+.++.+..  ..+++.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+...+++|+.|+|++|.+++. |
T Consensus       109 N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~  185 (487)
T 3oja_A          109 NNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K  185 (487)
T ss_dssp             SCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred             CcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence            3344444432  345677777777777666666667777777777777777656665542255566666655555532 2


Q ss_pred             hhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          138 TNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       138 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      . ...+++|+.|++++|.+++ +|+.+..+++|+.|++++|
T Consensus       186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             C-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred             c-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCC
Confidence            2 2234455555555555542 3333444444555544444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.45  E-value=2e-13  Score=113.07  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=91.5

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCc-ccchhccCCccCCE
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~  148 (179)
                      ..++++|++++|.+.+..|..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++ .+|..++.+++|++
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP-LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT-CTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc-CCCCcEEECCCCcccccchhhhhhccCCccE
Confidence            467999999999999888888999999999999999999666666777 8999999999999985 45677888999999


Q ss_pred             eecccccCcccCc-hhhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSGQIP-PQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|++.+.+| ..+..+++|++|++++|+
T Consensus       128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             EECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            9999988555665 568888888888888764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.44  E-value=2.7e-13  Score=112.60  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=77.8

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..+..++.+++|++|+
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  130 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC-ccccccccccccccccCCCccccccccccEEe
Confidence            45777777777777666666777777777777777777444455555 77777777777777743333577788888888


Q ss_pred             cccccCcc-cCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSG-QIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g-~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|.+++ .+|..++++++|++|++++|+
T Consensus       131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             cCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            88888775 467888888888888887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.43  E-value=2.1e-13  Score=114.72  Aligned_cols=107  Identities=16%  Similarity=0.159  Sum_probs=93.0

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.++++++.+....+..+..++.|++|++++|.+++..|..+.. +++|+.|+|++|.+++..|..++.+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45788999999988655556788999999999999999666667777 99999999999999987777889999999999


Q ss_pred             cccccCcccCchh-hcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~-~~~l~~L~~L~l~~N~  179 (179)
                      +++|.++ .+|.. |+.+++|++|++++|+
T Consensus       130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~  158 (597)
T 3oja_B          130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNN  158 (597)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             eeCCCCC-CCCHHHhccCCCCCEEEeeCCc
Confidence            9999999 56655 6899999999999984

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=8.1e-13  Score=94.58  Aligned_cols=102  Identities=24%  Similarity=0.275  Sum_probs=83.3

Q ss_pred             CCCcccceeeecCC--------CCCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHH-HhcccCccEE
Q 042065           55 GFICKFTGVECWHP--------DENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDI-SKLVGFLTGL  125 (179)
Q Consensus        55 ~~~c~w~gv~c~~~--------~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~-~~~l~~L~~L  125 (179)
                      .+.|....+.|...        -..+++.|++++|.+.+..|..|..+++|++|+|++|.++ .+|..+ .. +++|+.|
T Consensus         9 ~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~-l~~L~~L   86 (174)
T 2r9u_A            9 QCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDK-LTQLTQL   86 (174)
T ss_dssp             TSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEE
T ss_pred             CCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCC-cchhhEE
Confidence            34555556666531        1357899999999999888889999999999999999999 566654 55 8999999


Q ss_pred             EcccCcCCcccchhccCCccCCEeecccccCcc
Q 042065          126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSG  158 (179)
Q Consensus       126 ~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g  158 (179)
                      +|++|++++..+..+..+++|++|++++|++..
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            999999995444458999999999999999983

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2.1e-13  Score=97.56  Aligned_cols=102  Identities=19%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             CcEEEEEecCCCceeeCCccCcCC-CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchh-ccCCccCCE
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNC-SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l-~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L~~  148 (179)
                      .+++.|++++|.+. .+|. +..+ ++|++|++++|.+++ + ..+.. +++|+.|++++|.++ .+|.. +..+++|++
T Consensus        19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~-l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPL-LRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   92 (176)
T ss_dssp             TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCC-CSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-ccccc-CCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence            56999999999998 4554 4444 499999999999984 4 46666 899999999999999 45644 589999999


Q ss_pred             eecccccCcccCch--hhcCCCCCCeEeccCCC
Q 042065          149 LKLDHNRFSGQIPP--QLGQLGRLKSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p~--~~~~l~~L~~L~l~~N~  179 (179)
                      |++++|+++ .+|.  .+..+++|+.|++++|.
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSG
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCC
Confidence            999999997 7787  78899999999999984

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.42  E-value=5.2e-13  Score=105.22  Aligned_cols=107  Identities=21%  Similarity=0.230  Sum_probs=85.2

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccch--hccCCccC
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPT--NLANCSYL  146 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L  146 (179)
                      ..++++|++++|.+.+..+..|.++++|++|++++|.++ .+|.. +.. +++|++|++++|.++ .+|.  .+..+++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L  151 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKP-LSSLTFLNLLGNPYK-TLGETSLFSHLTKL  151 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTT-CTTCSEEECTTCCCS-SSCSSCSCTTCTTC
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCC-CccCCEEECCCCCCc-ccCchhhhccCCCC
Confidence            467899999999999877888999999999999999998 56655 556 889999999999888 5665  67788888


Q ss_pred             CEeeccccc-CcccCchhhcCCCCCCeEeccCCC
Q 042065          147 NSLKLDHNR-FSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       147 ~~L~l~~n~-l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++|++++|+ +....|..+..+++|++|++++|+
T Consensus       152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             cEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            888888884 554445667777778888777663

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.42  E-value=4.9e-13  Score=110.21  Aligned_cols=108  Identities=23%  Similarity=0.259  Sum_probs=75.7

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCC--CChhHHHhcccCccEEEcccCcCCcccchh-ccCCccC
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCSYL  146 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g--~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L  146 (179)
                      ..++++|++++|.+.+.+|..+..+++|+.|++++|.+++  .+|..+.. +++|+.|++++|.+++.+|.. +..+++|
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccchhccCccC
Confidence            4568888888888887788888888888888888888875  45566666 788888888888888656654 4555555


Q ss_pred             CEeecccccCcc---------------------cCchhhcCCCCCCeEeccCC
Q 042065          147 NSLKLDHNRFSG---------------------QIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       147 ~~L~l~~n~l~g---------------------~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +.|++++|++++                     .+|..+..+++|++|++++|
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence            555555554443                     44555555566666666655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.41  E-value=3e-13  Score=114.82  Aligned_cols=106  Identities=24%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChh-HHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPD-DISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .++++|++++|.+.+..|..|.++++|++|++++|.++ .+|. .+.. +++|++|++++|.+++..|..++.+++|++|
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  126 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAF-CTNLTELHLMSNSIQKIKNNPFVKQKNLITL  126 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTT-CTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhcc-CCCCCEEECCCCccCccChhHccccCCCCEE
Confidence            35666777776666655666666666677777666666 4444 3444 6666666666666664444556666666666


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++++|.+++..|..++.+++|++|++++|
T Consensus       127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A          127 DLSHNGLSSTKLGTQVQLENLQELLLSNN  155 (680)
T ss_dssp             ECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred             ECCCCcccccCchhhcccccCCEEEccCC
Confidence            66666666555555666666666666665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.41  E-value=5.2e-13  Score=111.91  Aligned_cols=108  Identities=22%  Similarity=0.099  Sum_probs=79.2

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..|..|.++++|++|++++|.+.+..|..+.. +++|++|++++|.+++..|..+..+++|++|+
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~  135 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG-PKALKHLFFIQTGISSIDFIPLHNQKTLESLY  135 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS-CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc-cccccEeeccccCcccCCcchhccCCcccEEE
Confidence            56788888888887777777888888888888888887666666666 77888888888888754466677777888888


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++.-++.+..+++|++|++++|+
T Consensus       136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A          136 LGSNHISSIKLPKGFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             CCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred             CCCCcccccCcccccCCcccCEEEcccCc
Confidence            88877774222333447777777777763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.41  E-value=1.5e-12  Score=93.06  Aligned_cols=103  Identities=29%  Similarity=0.317  Sum_probs=84.4

Q ss_pred             EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065           73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD  152 (179)
Q Consensus        73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~  152 (179)
                      .+.++++++++. .+|..+  .++|+.|++++|.+++..+..+.. +++|++|++++|.+++..+..+..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDK-LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcC-cccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            367889999987 566544  478999999999998443444556 8999999999999995555567899999999999


Q ss_pred             cccCcccCchhhcCCCCCCeEeccCCC
Q 042065          153 HNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +|++++..+..+..+++|++|++++|+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQ  111 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCc
Confidence            999996555567899999999999985

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.41  E-value=2.7e-13  Score=105.30  Aligned_cols=108  Identities=20%  Similarity=0.182  Sum_probs=65.7

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCC--ChhHH--HhcccCccEEEcccCcCCc--ccc-hhccCC
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGS--LPDDI--SKLVGFLTGLDLSSNNFSG--SIP-TNLANC  143 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~--~p~~~--~~~l~~L~~L~L~~n~l~g--~~p-~~~~~l  143 (179)
                      .++++|++++|.+.+..|..+..+++|++|++++|.+.+.  +|..+  .. +++|++|++++|.+++  .++ ..+..+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK-FPTLQVLALRNAGMETPSGVCSALAAAR  227 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS-CTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc-CCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence            4577777777777665556677777777777777776544  23333  33 5667777777776662  122 223455


Q ss_pred             ccCCEeecccccCcccCc-hhhcCCCCCCeEeccCCC
Q 042065          144 SYLNSLKLDHNRFSGQIP-PQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       144 ~~L~~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N~  179 (179)
                      ++|+.|++++|++++..| ..+..+++|++|++++|+
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            667777777776665443 334455666666666663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.40  E-value=4.6e-13  Score=116.73  Aligned_cols=109  Identities=26%  Similarity=0.299  Sum_probs=79.7

Q ss_pred             CCcEEEEEecCCCceeeC-CccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchh--ccCCccC
Q 042065           70 ENKVLNLRLTDMGLKGQF-PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTN--LANCSYL  146 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~-p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~--~~~l~~L  146 (179)
                      ..+++.|++++|...+.+ |..|.++++|++|+|++|.+.+..|..+.. +++|++|+|++|.+++.+|..  +..+++|
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCCCCcccccCccccccCCC
Confidence            356778888887655555 566777888888888888887656777766 777888888888877656654  7778888


Q ss_pred             CEeecccccCcccCc-hhhcCCCCCCeEeccCCC
Q 042065          147 NSLKLDHNRFSGQIP-PQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       147 ~~L~l~~n~l~g~~p-~~~~~l~~L~~L~l~~N~  179 (179)
                      ++|++++|++++..| ..++.+++|++|++++|+
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            888888888775443 467778888888877763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.40  E-value=3.2e-13  Score=104.73  Aligned_cols=107  Identities=15%  Similarity=0.123  Sum_probs=83.0

Q ss_pred             cEEEEEecCCCceeeCCccC--cCCCCCcEEEcccCCCCCCCh----hHHHhcccCccEEEcccCcCCcccchhccCCcc
Q 042065           72 KVLNLRLTDMGLKGQFPRGI--RNCSSMTGLDLSSNKLYGSLP----DDISKLVGFLTGLDLSSNNFSGSIPTNLANCSY  145 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l--~~l~~L~~L~L~~n~l~g~~p----~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~  145 (179)
                      ++++|++++|.+.+..|..+  ..+++|++|++++|.+++..|    ..+.. +++|++|++++|.+.+..|..+..+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL-KPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB-CSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh-ccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            48899999999998888887  888999999999999886554    23344 788999999999998777778888889


Q ss_pred             CCEeecccccCccc--Cchh--hcCCCCCCeEeccCCC
Q 042065          146 LNSLKLDHNRFSGQ--IPPQ--LGQLGRLKSFSVANNL  179 (179)
Q Consensus       146 L~~L~l~~n~l~g~--~p~~--~~~l~~L~~L~l~~N~  179 (179)
                      |++|++++|++.+.  ++..  ++.+++|++|++++|+
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence            99999999887642  2222  3567777777777764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=8.6e-13  Score=102.67  Aligned_cols=102  Identities=21%  Similarity=0.246  Sum_probs=53.3

Q ss_pred             EEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           73 VLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        73 l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      ++.|++++|.+.+..+..+. .+++|++|++++|.++ .+|... . +++|++|++++|.++ .+|..+..+++|+.|++
T Consensus       146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~-~-l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L  221 (317)
T 3o53_A          146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-V-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL  221 (317)
T ss_dssp             EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCC-C-CTTCCEEECCSSCCC-EECGGGGGGTTCSEEEC
T ss_pred             CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cccccc-c-cccCCEEECCCCcCC-cchhhhcccCcccEEEC
Confidence            44444444444433333221 3444444444444444 222211 1 455566666666665 34455666666666666


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++|+++ .+|..+..+++|+.|++++|.
T Consensus       222 ~~N~l~-~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          222 RNNKLV-LIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             TTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred             cCCccc-chhhHhhcCCCCCEEEccCCC
Confidence            666666 456666666677777776663

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=5.2e-13  Score=103.90  Aligned_cols=107  Identities=18%  Similarity=0.140  Sum_probs=91.3

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..++++|++++|.+.+..+..+..+++|++|++++|.+++..|..+...+++|++|++++|.++ .+|.. ..+++|+.|
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~-~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECC-CCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccccc-cccccCCEE
Confidence            4579999999999997777788899999999999999996666666533889999999999999 45543 458999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|+++ .+|..+..+++|+.|++++|+
T Consensus       197 ~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             ECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred             ECCCCcCC-cchhhhcccCcccEEECcCCc
Confidence            99999999 567779999999999999985

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.39  E-value=9.2e-13  Score=106.80  Aligned_cols=104  Identities=20%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      ++++|++++|.+. .+| .+..+++|+.|++++|.+++..|..+.. +++|+.|++++|++++..|..+..+++|+.|++
T Consensus       186 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          186 NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred             ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc-CccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence            3444444444444 223 2444555555555555555433444444 555666666666665444555556666666666


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|++++..+..+..+++|+.|++++|
T Consensus       263 ~~N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          263 AHNNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             TTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCCCCccChhHhccccCCCEEEcCCC
Confidence            666666333344555666666666665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=9.8e-13  Score=106.99  Aligned_cols=104  Identities=19%  Similarity=0.210  Sum_probs=61.9

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      +++.|++++|.+.+ +| .+..+++|+.|++++|.+++..|..+.. +++|+.|++++|.+++..|..+..+++|+.|++
T Consensus       197 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  273 (452)
T 3zyi_A          197 NLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNL  273 (452)
T ss_dssp             TCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence            45555555555542 22 3455566666666666666444555555 666666666666666555556666666666666


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|++++..+..+..+++|+.|++++|
T Consensus       274 ~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          274 AHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             CCCcCCccChHHhccccCCCEEEccCC
Confidence            666666333344556666777776666

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.37  E-value=2.3e-13  Score=105.55  Aligned_cols=104  Identities=25%  Similarity=0.331  Sum_probs=58.1

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCC---------------------------ChhH---H-Hhcc
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGS---------------------------LPDD---I-SKLV  119 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~---------------------------~p~~---~-~~~l  119 (179)
                      .++++|++++|.+.+..+..+..+++|++|++++|.+.+.                           +|..   + .. +
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-G  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-T
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-C
Confidence            4677777777777766666677777777777777765421                           1211   1 22 4


Q ss_pred             cCccEEEcccCcCCcccchhccCC---ccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          120 GFLTGLDLSSNNFSGSIPTNLANC---SYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       120 ~~L~~L~L~~n~l~g~~p~~~~~l---~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N  282 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN  282 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC
Confidence            455555555555554444444443   35555555555555 4454442  45555555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.37  E-value=1.2e-12  Score=109.73  Aligned_cols=101  Identities=22%  Similarity=0.232  Sum_probs=88.8

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCccc-chhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSI-PTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L  149 (179)
                      .+++.|++++|.++ .+|..+..+++|+.|+|++|.++ .+| .+.. +++|+.|+|++|.+++.. |..++.+++|+.|
T Consensus       463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            57999999999999 88999999999999999999999 488 7777 999999999999999765 9999999999999


Q ss_pred             ecccccCcccCch---hhcCCCCCCeEec
Q 042065          150 KLDHNRFSGQIPP---QLGQLGRLKSFSV  175 (179)
Q Consensus       150 ~l~~n~l~g~~p~---~~~~l~~L~~L~l  175 (179)
                      ++++|++++..|.   .+..+++|+.|++
T Consensus       539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          539 NLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999955432   2334889999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.37  E-value=2.2e-12  Score=100.62  Aligned_cols=85  Identities=20%  Similarity=0.316  Sum_probs=54.7

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.. +++|++|++++|.++ .+|..+..+++|++|+
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  269 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence            35666666666666655666666666777777766666444445555 666666666666666 6666666666666666


Q ss_pred             cccccCc
Q 042065          151 LDHNRFS  157 (179)
Q Consensus       151 l~~n~l~  157 (179)
                      +++|+++
T Consensus       270 l~~N~i~  276 (330)
T 1xku_A          270 LHNNNIS  276 (330)
T ss_dssp             CCSSCCC
T ss_pred             CCCCcCC
Confidence            6666666

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.36  E-value=9.2e-13  Score=98.38  Aligned_cols=105  Identities=13%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             CcEEEEEecCCC-ceeeCCccCcCCCCCcEEEccc-CCCCCCChh-HHHhcccCccEEEcccCcCCcccchhccCCccCC
Q 042065           71 NKVLNLRLTDMG-LKGQFPRGIRNCSSMTGLDLSS-NKLYGSLPD-DISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN  147 (179)
Q Consensus        71 ~~l~~L~l~~~~-l~~~~p~~l~~l~~L~~L~L~~-n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~  147 (179)
                      .++++|++++|. ++...+..|.++++|++|++++ |.++ .+|. .+.. +++|++|++++|.+++ +|. +..+++|+
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~-l~~L~~L~l~~n~l~~-lp~-~~~l~~L~  130 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKE-LPLLKFLGIFNTGLKM-FPD-LTKVYSTD  130 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEEC-CTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCC-CCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence            567778888776 6655455677777788888877 7777 4443 3444 6777777777777773 665 66666666


Q ss_pred             ---Eeecccc-cCcccCchhhcCCCCCC-eEeccCCC
Q 042065          148 ---SLKLDHN-RFSGQIPPQLGQLGRLK-SFSVANNL  179 (179)
Q Consensus       148 ---~L~l~~n-~l~g~~p~~~~~l~~L~-~L~l~~N~  179 (179)
                         .|++++| ++++..+..+..+++|+ .|++++|+
T Consensus       131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             cccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence               7777777 66633334466677777 77776653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.35  E-value=1.1e-12  Score=108.04  Aligned_cols=104  Identities=20%  Similarity=0.244  Sum_probs=91.8

Q ss_pred             CcEEEEEecCCCceeeCCccCc-CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .+++.|++++|.+.+..|..+. .+++|+.|+|++|.+++ +|... . +++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~~~-~-l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L  219 (487)
T 3oja_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-V-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI  219 (487)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCC-C-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred             CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccccc-c-CCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence            5799999999999988888776 79999999999999984 44432 3 8899999999999995 66679999999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|.++ .+|..+..+++|+.|++++|.
T Consensus       220 ~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             ECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred             EecCCcCc-ccchhhccCCCCCEEEcCCCC
Confidence            99999999 589999999999999999984

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.35  E-value=1.5e-12  Score=108.59  Aligned_cols=108  Identities=22%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCC--CChhHHHhcccCccEEEcccCcCCcccchh-ccCCc--
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFSGSIPTN-LANCS--  144 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g--~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~--  144 (179)
                      ..++++|++++|.+.+.+|..+..+++|++|++++|.+++  .+|..+.. +++|+.|++++|.+++.+|.. +..++  
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            3567788888888777677777777888888888887773  22334455 677777777777777545543 33343  


Q ss_pred             --------------------cCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          145 --------------------YLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       145 --------------------~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                                          +|+.|++++|+++ .+|..+..+++|++|++++|+
T Consensus       431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred             CEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence                                5555555555555 566666666777777777664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.34  E-value=1.4e-12  Score=103.93  Aligned_cols=107  Identities=16%  Similarity=0.159  Sum_probs=92.2

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|+++++.+....+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..|..++.+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            56889999999988544445788999999999999998555557777 99999999999999977777899999999999


Q ss_pred             cccccCcccCchh-hcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQ-LGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~-~~~l~~L~~L~l~~N~  179 (179)
                      +++|+++ .+|.. +..+++|++|++++|+
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNN  152 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCc
Confidence            9999999 67766 5889999999999984

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=5.4e-14  Score=102.44  Aligned_cols=102  Identities=17%  Similarity=0.240  Sum_probs=87.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+.. +++|++|++++|.+++ +| .+..+++|++|+
T Consensus        48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-CCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            578999999999886 67 7888999999999999998 88887776 7899999999999994 66 688889999999


Q ss_pred             cccccCcccCc--hhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIP--PQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p--~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|+++ .+|  ..+..+++|++|++++|.
T Consensus       122 l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCCCcCC-chhHHHHHhcCCCCCEEEecCCc
Confidence            9999998 444  378899999999999883

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.33  E-value=2e-12  Score=101.06  Aligned_cols=84  Identities=20%  Similarity=0.254  Sum_probs=50.6

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      ++++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l  271 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL  271 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-CCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence            4556666666665554555666666666666666666444444544 566666666666666 56666666666666666


Q ss_pred             ccccCc
Q 042065          152 DHNRFS  157 (179)
Q Consensus       152 ~~n~l~  157 (179)
                      ++|+++
T Consensus       272 ~~N~l~  277 (332)
T 2ft3_A          272 HTNNIT  277 (332)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.31  E-value=7.2e-12  Score=97.20  Aligned_cols=100  Identities=26%  Similarity=0.404  Sum_probs=56.3

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+ + +.+..+++|++|++++|.++ .+|. +.. +++|++|++++|.+++ ++. +..+++|+.|+
T Consensus        85 ~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  157 (308)
T 1h6u_A           85 TKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT-DVTP-LAG-LSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS  157 (308)
T ss_dssp             CSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC-CCGG-GTT-CTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred             CCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCC-Cchh-hcC-CCCCCEEECCCCccCc-Ccc-ccCCCCccEEE
Confidence            345555555555543 2 23555555666666666655 3433 444 5666666666666653 332 55666666666


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|+++ .++. +..+++|+.|++++|+
T Consensus       158 l~~n~l~-~~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          158 IGNAQVS-DLTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             CCSSCCC-CCGG-GTTCTTCCEEECCSSC
T ss_pred             ccCCcCC-CChh-hcCCCCCCEEECCCCc
Confidence            6666666 3443 6666667777766653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.31  E-value=8.2e-12  Score=94.91  Aligned_cols=99  Identities=20%  Similarity=0.330  Sum_probs=80.1

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++++|.+.+ +++ +..+++|++|++++|.++ .+|...   .++|+.|++++|.+++ ++ .+..+++|+.|+
T Consensus        63 ~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~---~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           63 TNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP---SACLSRLFLDNNELRD-TD-SLIHLKNLEILS  134 (263)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC---CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc---cCcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence            578899999998885 344 888899999999999987 455422   2679999999999884 44 588899999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++ +| .+..+++|+.|++++|+
T Consensus       135 Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          135 IRNNKLKS-IV-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             CTTSCCCB-CG-GGGGCTTCCEEECTTSC
T ss_pred             CCCCcCCC-Ch-HHccCCCCCEEECCCCc
Confidence            99999984 55 68889999999999885

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.30  E-value=4e-12  Score=100.27  Aligned_cols=121  Identities=12%  Similarity=0.090  Sum_probs=90.2

Q ss_pred             CCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE-EE
Q 042065           56 FICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG-LD  126 (179)
Q Consensus        56 ~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~-L~  126 (179)
                      +.|.+..|.|....        ..++++|+|++|.++...+..|.++++|++|+|++|.+.+.+|...+..++++++ +.
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            66889999997421        2468999999999996555679999999999999999876787655433677665 56


Q ss_pred             cccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEecc
Q 042065          127 LSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVA  176 (179)
Q Consensus       127 L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~  176 (179)
                      +..|+++...|..+..+++|++|++++|++....+..+....++..+++.
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~  136 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ  136 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence            67789996556788999999999999999984333333344444555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.30  E-value=6.2e-12  Score=95.59  Aligned_cols=99  Identities=21%  Similarity=0.253  Sum_probs=75.8

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..+++.|++++|.+.+ +|. +.. ++|+.|++++|.++ .++ .+.. +++|+.|++++|++++ +| .+..+++|+.|
T Consensus        84 l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~-~~~-~l~~-l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L  155 (263)
T 1xeu_A           84 LTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELR-DTD-SLIH-LKNLEILSIRNNKLKS-IV-MLGFLSKLEVL  155 (263)
T ss_dssp             CSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCS-BSG-GGTT-CTTCCEEECTTSCCCB-CG-GGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccC-CCh-hhcC-cccccEEECCCCcCCC-Ch-HHccCCCCCEE
Confidence            3568888888888875 443 233 78888888888887 454 4666 7888888888888884 44 57788888888


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++++|++++.  ..+..+++|+.|++++|
T Consensus       156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          156 DLHGNEITNT--GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             ECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred             ECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence            8888888854  66778888888888876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.30  E-value=6.5e-12  Score=98.38  Aligned_cols=102  Identities=18%  Similarity=0.311  Sum_probs=62.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.. + +.+..+++|++|++++|.++ .+| .+.. +++|+.|++++|.+++..|..+..+++|+.|+
T Consensus       243 ~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          243 SQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DIS-VLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             TTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CCG-GGGG-CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred             CCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CCh-hhcC-CCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence            345555555555543 2 34556666666666666665 333 3444 66677777777777666666666777777777


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..|  +..+++|+.|++++|.
T Consensus       318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          318 LSQNHITDIRP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             CCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred             ccCCccccccC--hhhhhccceeehhhhc
Confidence            77777764333  6666777777777663

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.30  E-value=1.1e-11  Score=96.15  Aligned_cols=100  Identities=27%  Similarity=0.370  Sum_probs=66.0

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++++|.+.+ ++. +..+++|++|++++|.++ .++. +.. +++|+.|++++|.+++ ++. +..+++|+.|+
T Consensus       107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  179 (308)
T 1h6u_A          107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT-NISP-LAG-LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLK  179 (308)
T ss_dssp             TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccC-cCcc-ccC-CCCccEEEccCCcCCC-Chh-hcCCCCCCEEE
Confidence            567788888887764 333 677777777777777776 4443 445 6777777777777773 443 66667777777


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|+++ .+|. +..+++|++|++++|+
T Consensus       180 l~~n~l~-~~~~-l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          180 ADDNKIS-DISP-LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             CCSSCCC-CCGG-GGGCTTCCEEECTTSC
T ss_pred             CCCCccC-cChh-hcCCCCCCEEEccCCc
Confidence            7777766 3333 5566666666666653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.30  E-value=9.6e-12  Score=95.81  Aligned_cols=100  Identities=24%  Similarity=0.386  Sum_probs=58.4

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++++|.+.+ + +.+..+++|++|++++|.++ .++ .+.. +++|+.|++++|.+++ + ..+..+++|+.|+
T Consensus        90 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-~~~-~l~~-l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~  162 (291)
T 1h6t_A           90 KNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITD-I-TVLSRLTKLDTLS  162 (291)
T ss_dssp             TTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred             CCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCC-CCh-hhcC-CCCCCEEEccCCcCCc-c-hhhccCCCCCEEE
Confidence            345555555555543 2 22555566666666666665 332 3444 5666666666666663 3 3566666777777


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++ ++. +..+++|+.|++++|+
T Consensus       163 L~~N~l~~-~~~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          163 LEDNQISD-IVP-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             ccCCcccc-chh-hcCCCccCEEECCCCc
Confidence            77777763 333 6667777777777663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.29  E-value=1.6e-11  Score=94.57  Aligned_cols=99  Identities=28%  Similarity=0.370  Sum_probs=52.1

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+. ++ +..+++|++|++++|.++ .+|. +.. +++|++|++++|.+++ + ..+..+++|+.|+
T Consensus        68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~  140 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK-DLSS-LKD-LKKLKSLSLEHNGISD-I-NGLVHLPQLESLY  140 (291)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CGGG-GTT-CTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred             CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC-CChh-hcc-CCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence            3455555555555532 22 555555555555555555 2332 444 5555555555555552 2 2345555555555


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|++++ + ..+..+++|++|++++|
T Consensus       141 l~~n~l~~-~-~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          141 LGNNKITD-I-TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             CCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred             ccCCcCCc-c-hhhccCCCCCEEEccCC
Confidence            55555552 2 34555555555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.28  E-value=2.6e-12  Score=107.63  Aligned_cols=101  Identities=29%  Similarity=0.451  Sum_probs=66.5

Q ss_pred             cccee-eecCCCCCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc
Q 042065           59 KFTGV-ECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP  137 (179)
Q Consensus        59 ~w~gv-~c~~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p  137 (179)
                      .|.++ .|..   ++++.|++++|++.+ +|..+  +++|+.|++++|.++ .+|   .. +++|+.|++++|.+++ +|
T Consensus        49 ~~~~l~~C~~---~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~-l~~L~~L~Ls~N~l~~-ip  116 (571)
T 3cvr_A           49 AVSLLKECLI---NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---EL-PASLEYLDACDNRLST-LP  116 (571)
T ss_dssp             HHHHHHHHHH---TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CC-CTTCCEEECCSSCCSC-CC
T ss_pred             hhhhcccccc---CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cc-cCCCCEEEccCCCCCC-cc
Confidence            68888 6753   468888888888875 66654  367777777777777 666   22 6677777777777774 66


Q ss_pred             hhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          138 TNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       138 ~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      . +..  +|+.|++++|++++ +|.   .+++|+.|++++|
T Consensus       117 ~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N  150 (571)
T 3cvr_A          117 E-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNN  150 (571)
T ss_dssp             C-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred             h-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCC
Confidence            5 443  66666666666663 554   3455555555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.26  E-value=2.6e-14  Score=104.19  Aligned_cols=102  Identities=22%  Similarity=0.278  Sum_probs=86.0

Q ss_pred             cEEEEEecCCCceeeCCc------cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCcc
Q 042065           72 KVLNLRLTDMGLKGQFPR------GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSY  145 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~------~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~  145 (179)
                      +++.++++.+.+.|.+|.      .+..+++|++|++++|.++ .+| .+.. +++|+.|++++|.++ .+|..+..+++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCc
Confidence            345555555556655554      8889999999999999998 588 7887 899999999999999 78988888899


Q ss_pred             CCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          146 LNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       146 L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |+.|++++|++++ +| .+..+++|++|++++|+
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence            9999999999994 66 68889999999999873

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.25  E-value=3.3e-11  Score=101.71  Aligned_cols=99  Identities=23%  Similarity=0.398  Sum_probs=52.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|+|++|.+.+ +| .+..+++|+.|+|++|.+. .++ .+.. +++|+.|+|++|.+++ + ..+..+++|+.|+
T Consensus        87 ~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~  159 (605)
T 1m9s_A           87 KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITD-I-TVLSRLTKLDTLS  159 (605)
T ss_dssp             TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCSEEECCSSCCCC-C-GGGGSCTTCSEEE
T ss_pred             CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCc-cccC-CCccCEEECCCCccCC-c-hhhcccCCCCEEE
Confidence            345555555555543 22 4555566666666666665 232 3444 5556666666665553 2 3455555666666


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      |++|++++..|  +..+++|+.|+|++|
T Consensus       160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          160 LEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CcCCcCCCchh--hccCCCCCEEECcCC
Confidence            66665553322  555555555555555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.24  E-value=2.5e-11  Score=95.08  Aligned_cols=102  Identities=25%  Similarity=0.371  Sum_probs=83.5

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+ ++. +..+++|++|++++|.++ .++ .+.. +++|+.|++++|.+++ +| .+..+++|+.|+
T Consensus       221 ~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~-l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~  293 (347)
T 4fmz_A          221 TRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQIS-DIN-AVKD-LTKLKMLNVGSNQISD-IS-VLNNLSQLNSLF  293 (347)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTT-CTTCCEEECCSSCCCC-CG-GGGGCTTCSEEE
T ss_pred             CcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccC-CCh-hHhc-CCCcCEEEccCCccCC-Ch-hhcCCCCCCEEE
Confidence            568888888888874 333 778889999999999887 453 4555 8889999999999884 44 578889999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..|..+..+++|++|++++|+
T Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             CCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             CcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            99999987778889999999999999884

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.23  E-value=1.1e-12  Score=102.20  Aligned_cols=37  Identities=27%  Similarity=0.438  Sum_probs=13.7

Q ss_pred             CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccC
Q 042065           93 NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN  130 (179)
Q Consensus        93 ~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n  130 (179)
                      .+++|++|++++|.+++..|..+.. +++|++|++++|
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~  152 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGC  152 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTC
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCC
Confidence            3333333333333333333333333 333333333333

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.23  E-value=4.3e-12  Score=98.91  Aligned_cols=106  Identities=23%  Similarity=0.208  Sum_probs=91.8

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCC-ChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGS-LPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~-~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .+++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+.. +++|++|++++|.+++..|..+..+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQ-CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTT-BCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhh-CCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            5688899999988876555 56799999999999999865 7777777 8999999999999998888899999999999


Q ss_pred             ecccc-cCccc-CchhhcCCCCCCeEeccCC
Q 042065          150 KLDHN-RFSGQ-IPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       150 ~l~~n-~l~g~-~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++++| .+++. +|..+..+++|++|++++|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            99999 68753 6777888999999999887

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.21  E-value=3.3e-11  Score=98.41  Aligned_cols=95  Identities=20%  Similarity=0.259  Sum_probs=65.2

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+ +|  +..+++|++|++++|.+++ +|  +.. +++|++|++++|.+++ +|  ++.+++|++|+
T Consensus        64 ~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~-l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTP-LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTT-CTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCC-CCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence            457777777777765 33  6667777777777777763 43  455 6777777777777774 44  66777777777


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|++++ +|  ++.+++|++|++++|
T Consensus       134 l~~N~l~~-l~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          134 CARNTLTE-ID--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             CTTSCCSC-CC--CTTCTTCCEEECTTC
T ss_pred             CCCCccce-ec--cccCCcCCEEECCCC
Confidence            77777774 33  667777777777776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.20  E-value=4e-11  Score=101.16  Aligned_cols=101  Identities=26%  Similarity=0.381  Sum_probs=87.7

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..+++.|+|++|.+.+ + +.+..+++|+.|+|++|.+++ + ..+.. +++|+.|+|++|.+.+..|  +..+++|+.|
T Consensus       108 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L  180 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNL  180 (605)
T ss_dssp             CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGS-CTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcc-cCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence            4679999999999985 3 468899999999999999984 4 56666 8999999999999996555  8999999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +|++|++++ +| .+..+++|+.|++++|+
T Consensus       181 ~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          181 YLSKNHISD-LR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred             ECcCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence            999999994 54 68899999999999873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.18  E-value=4.4e-12  Score=101.02  Aligned_cols=108  Identities=18%  Similarity=0.285  Sum_probs=72.4

Q ss_pred             CcEEEEEecCCCce--e---eCCccCcCCCCCcEEEcccCCCC----CCChhHHHhcccCccEEEcccCcCCcc----cc
Q 042065           71 NKVLNLRLTDMGLK--G---QFPRGIRNCSSMTGLDLSSNKLY----GSLPDDISKLVGFLTGLDLSSNNFSGS----IP  137 (179)
Q Consensus        71 ~~l~~L~l~~~~l~--~---~~p~~l~~l~~L~~L~L~~n~l~----g~~p~~~~~~l~~L~~L~L~~n~l~g~----~p  137 (179)
                      .++++|++++|.+.  |   ..+..+..+++|+.|++++|.++    +.+|..+.. +++|+.|+|++|.+++.    +|
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCCCCchhhHHHHH
Confidence            35667777777665  2   22335666777777777777774    356666666 67777777777777754    45


Q ss_pred             hhcc--CCccCCEeecccccCcc----cCchhh-cCCCCCCeEeccCCC
Q 042065          138 TNLA--NCSYLNSLKLDHNRFSG----QIPPQL-GQLGRLKSFSVANNL  179 (179)
Q Consensus       138 ~~~~--~l~~L~~L~l~~n~l~g----~~p~~~-~~l~~L~~L~l~~N~  179 (179)
                      ..+.  .+++|+.|++++|.+++    .+|..+ .++++|++|++++|+
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            5553  37777888888877775    366666 457778888877763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.17  E-value=5.2e-11  Score=97.16  Aligned_cols=101  Identities=30%  Similarity=0.424  Sum_probs=48.5

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc-------------
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP-------------  137 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p-------------  137 (179)
                      .+++.|++++|.+.+. ++ +..+++|+.|++++|.+.+ ++. +.. +++|+.|++++|.+++..|             
T Consensus       265 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~-l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  339 (466)
T 1o6v_A          265 TKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLED-ISP-ISN-LKNLTYLTLYFNNISDISPVSSLTKLQRLFFY  339 (466)
T ss_dssp             TTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSC-CGG-GGG-CTTCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred             CCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccC-chh-hcC-CCCCCEEECcCCcCCCchhhccCccCCEeECC
Confidence            3455556655555532 22 4445555555555555542 222 333 4445555555554443322             


Q ss_pred             -------hhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          138 -------TNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       138 -------~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                             ..+..+++|+.|++++|++++..|  +..+++|+.|++++|
T Consensus       340 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          340 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             CCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence                   234445555555555555554333  455555555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.17  E-value=9.6e-11  Score=95.56  Aligned_cols=100  Identities=23%  Similarity=0.371  Sum_probs=82.5

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++++|.+.+..+  +..+++|+.|++++|.++ .+|. +.. +++|+.|++++|.+++. +. +..+++|+.|+
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~-l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~  315 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LAG-LTALTNLELNENQLEDI-SP-ISNLKNLTYLT  315 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-GTT-CTTCSEEECCSSCCSCC-GG-GGGCTTCSEEE
T ss_pred             CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-ccC-CCccCeEEcCCCcccCc-hh-hcCCCCCCEEE
Confidence            579999999999986543  889999999999999998 4554 666 89999999999999954 43 78899999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..|  +..+++|+.|++++|+
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSC
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCc
Confidence            99999986544  6677777777777763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=5.9e-11  Score=93.13  Aligned_cols=85  Identities=21%  Similarity=0.212  Sum_probs=72.9

Q ss_pred             CcEEEEEecC-CCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTD-MGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .+++.|+|++ |.+.+..+..|..+++|++|+|++|.+++..|..+.. +++|+.|+|++|++++..+..+..++ |+.|
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF-TPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS-CSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC-CcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            4699999996 9999877788999999999999999999766777777 99999999999999954444455555 9999


Q ss_pred             ecccccCc
Q 042065          150 KLDHNRFS  157 (179)
Q Consensus       150 ~l~~n~l~  157 (179)
                      ++.+|++.
T Consensus       109 ~l~~N~~~  116 (347)
T 2ifg_A          109 VLSGNPLH  116 (347)
T ss_dssp             ECCSSCCC
T ss_pred             EeeCCCcc
Confidence            99999987

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.15  E-value=5.9e-11  Score=99.45  Aligned_cols=94  Identities=21%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccC--------------------ccEEEcccCc
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF--------------------LTGLDLSSNN  131 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~--------------------L~~L~L~~n~  131 (179)
                      +++.|++++|.+++ +|.   .+++|+.|++++|.++ .+|.   . +++                    |+.|+|++|.
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~-l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~  191 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE---L-PTSLEVLSVRNNQLTFLPELPESLEALDVSTNL  191 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---C-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC---c-CCCcCEEECCCCCCCCcchhhCCCCEEECcCCC
Confidence            45555555555553 333   3445555555555554 2443   1 344                    4555555555


Q ss_pred             CCcccchhccCCccC-------CEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          132 FSGSIPTNLANCSYL-------NSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       132 l~g~~p~~~~~l~~L-------~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++ .+|. +..  +|       +.|++++|+++ .+|..+..+++|+.|++++|+
T Consensus       192 L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          192 LE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred             CC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence            55 4444 332  45       66677777776 567777777777777777774

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.14  E-value=2e-11  Score=96.54  Aligned_cols=108  Identities=25%  Similarity=0.283  Sum_probs=71.2

Q ss_pred             cEEEEEecCCCceeeCCccCcCC-----CCCcEEEcccCCCCCCChhHHHhc---c-cCccEEEcccCcCCcccchhc--
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNC-----SSMTGLDLSSNKLYGSLPDDISKL---V-GFLTGLDLSSNNFSGSIPTNL--  140 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l-----~~L~~L~L~~n~l~g~~p~~~~~~---l-~~L~~L~L~~n~l~g~~p~~~--  140 (179)
                      ++++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..+...   + ++|++|++++|.+++..+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            67788888887776555555543     778888888888776666555441   2 678888888888775444333  


Q ss_pred             --cC-CccCCEeecccccCccc----CchhhcCCC-CCCeEeccCCC
Q 042065          141 --AN-CSYLNSLKLDHNRFSGQ----IPPQLGQLG-RLKSFSVANNL  179 (179)
Q Consensus       141 --~~-l~~L~~L~l~~n~l~g~----~p~~~~~l~-~L~~L~l~~N~  179 (179)
                        .. .++|++|++++|+++..    ++..+..++ +|++|++++|+
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence              23 35788888888887743    334445554 78888888774

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.11  E-value=1.8e-11  Score=97.41  Aligned_cols=83  Identities=20%  Similarity=0.366  Sum_probs=37.7

Q ss_pred             CCCcEEEcccCCCC-CCCh---hHHHhcccCccEEEcccCcCC--c---ccchhccCCccCCEeecccccCc----ccCc
Q 042065           95 SSMTGLDLSSNKLY-GSLP---DDISKLVGFLTGLDLSSNNFS--G---SIPTNLANCSYLNSLKLDHNRFS----GQIP  161 (179)
Q Consensus        95 ~~L~~L~L~~n~l~-g~~p---~~~~~~l~~L~~L~L~~n~l~--g---~~p~~~~~l~~L~~L~l~~n~l~----g~~p  161 (179)
                      ++|++|++++|.++ +.+|   ..+.. +++|+.|++++|.++  |   .+|..+..+++|+.|++++|.++    +.+|
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQS-HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  237 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHH-CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHh-CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence            44555555555544 2223   22333 444555555555444  1   12224444555555555555553    3344


Q ss_pred             hhhcCCCCCCeEeccCC
Q 042065          162 PQLGQLGRLKSFSVANN  178 (179)
Q Consensus       162 ~~~~~l~~L~~L~l~~N  178 (179)
                      ..+..+++|++|++++|
T Consensus       238 ~~l~~~~~L~~L~L~~n  254 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDC  254 (386)
T ss_dssp             HHGGGCTTCCEEECTTC
T ss_pred             HHHccCCCcCEEECCCC
Confidence            44444555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.10  E-value=2.9e-10  Score=92.77  Aligned_cols=78  Identities=24%  Similarity=0.379  Sum_probs=51.0

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..    ..+|++|++++|.+++ +| .++.+++|+.|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            467777777777774 56 4777777888888887777 35542    3456777777777663 55 456666666665


Q ss_pred             cccccCc
Q 042065          151 LDHNRFS  157 (179)
Q Consensus       151 l~~n~l~  157 (179)
                      +++|+++
T Consensus       202 l~~N~l~  208 (454)
T 1jl5_A          202 ADNNSLK  208 (454)
T ss_dssp             CCSSCCS
T ss_pred             CCCCcCC
Confidence            5555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.08  E-value=3.6e-10  Score=92.32  Aligned_cols=77  Identities=27%  Similarity=0.365  Sum_probs=37.0

Q ss_pred             cCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCC
Q 042065           92 RNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLK  171 (179)
Q Consensus        92 ~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~  171 (179)
                      ..+++|+.|++++|.++ .+|  +.. +++|+.|++++|.+++ +  .++.+++|+.|++++|++++ +|  ++.+++|+
T Consensus       167 ~~l~~L~~L~ls~n~l~-~l~--l~~-l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~  236 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNKIT-ELD--VSQ-NKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT  236 (457)
T ss_dssp             TTCTTCCEEECCSSCCC-CCC--CTT-CTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred             ccCCcCCEEECCCCccc-eec--ccc-CCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence            34444455555555444 233  233 4445555555555442 2  14445555555555555553 44  44555555


Q ss_pred             eEeccCC
Q 042065          172 SFSVANN  178 (179)
Q Consensus       172 ~L~l~~N  178 (179)
                      .|++++|
T Consensus       237 ~L~l~~N  243 (457)
T 3bz5_A          237 YFDCSVN  243 (457)
T ss_dssp             EEECCSS
T ss_pred             EEEeeCC
Confidence            5555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.07  E-value=5.6e-11  Score=94.01  Aligned_cols=108  Identities=26%  Similarity=0.279  Sum_probs=88.0

Q ss_pred             CcEEEEEecCCCceeeCC----ccCcCCC-CCcEEEcccCCCCCCChhHHHhcc-----cCccEEEcccCcCCcccchh-
Q 042065           71 NKVLNLRLTDMGLKGQFP----RGIRNCS-SMTGLDLSSNKLYGSLPDDISKLV-----GFLTGLDLSSNNFSGSIPTN-  139 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p----~~l~~l~-~L~~L~L~~n~l~g~~p~~~~~~l-----~~L~~L~L~~n~l~g~~p~~-  139 (179)
                      .++++|++++|.+....+    ..+..++ +|++|++++|.+++..+..+.. +     ++|++|++++|.+++..+.. 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-ILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH-HHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH-HHhccCCCccEEECcCCcCChHHHHHH
Confidence            459999999999986555    6677888 8999999999999777877776 4     89999999999999766654 


Q ss_pred             ---ccCC-ccCCEeecccccCcccCchhhc----C-CCCCCeEeccCCC
Q 042065          140 ---LANC-SYLNSLKLDHNRFSGQIPPQLG----Q-LGRLKSFSVANNL  179 (179)
Q Consensus       140 ---~~~l-~~L~~L~l~~n~l~g~~p~~~~----~-l~~L~~L~l~~N~  179 (179)
                         +..+ ++|+.|++++|++++..+..+.    . .++|++|++++|+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence               3444 8999999999999865554443    3 3699999999985

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.06  E-value=3.7e-10  Score=95.53  Aligned_cols=75  Identities=31%  Similarity=0.354  Sum_probs=62.8

Q ss_pred             CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEe
Q 042065           95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFS  174 (179)
Q Consensus        95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~  174 (179)
                      ++|+.|++++|.++ .+|   .. +++|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~-l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VL-PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CC-CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             CCCCEEEccCCccC-cCC---CC-CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            66788888888887 466   22 678888999998888 6776   5788999999999999 8899999999999999


Q ss_pred             ccCCC
Q 042065          175 VANNL  179 (179)
Q Consensus       175 l~~N~  179 (179)
                      +++|.
T Consensus       291 L~~N~  295 (622)
T 3g06_A          291 LEGNP  295 (622)
T ss_dssp             CCSCC
T ss_pred             ecCCC
Confidence            99984

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.02  E-value=3.9e-10  Score=88.81  Aligned_cols=101  Identities=17%  Similarity=0.177  Sum_probs=83.0

Q ss_pred             EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccch-hccCCccCCE-ee
Q 042065           74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNS-LK  150 (179)
Q Consensus        74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~-L~  150 (179)
                      ++++.++++++ .+|..+  .+++++|+|++|.++ .+|.. +.. +++|++|+|++|.+.+.+|. .|.+++++.. +.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~-l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTT-CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcC-CCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            35778899988 678765  468999999999998 78765 455 99999999999998767775 5788888775 56


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +..|+++...|..|..+++|++|++++|+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred             ccCCcccccCchhhhhccccccccccccc
Confidence            67799996667788999999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.00  E-value=3.5e-10  Score=92.26  Aligned_cols=76  Identities=30%  Similarity=0.385  Sum_probs=46.4

Q ss_pred             CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcc--cCchhhcCC-----
Q 042065           95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSG--QIPPQLGQL-----  167 (179)
Q Consensus        95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g--~~p~~~~~l-----  167 (179)
                      ++|++|++++|.++ .+|..    +++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..+     
T Consensus       317 ~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~  387 (454)
T 1jl5_A          317 PSLEELNVSNNKLI-ELPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH  387 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred             CcCCEEECCCCccc-ccccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence            46777777777776 35543    467788888888877 5666   46788888888888887  677777666     


Q ss_pred             --------CCCCeEeccCCC
Q 042065          168 --------GRLKSFSVANNL  179 (179)
Q Consensus       168 --------~~L~~L~l~~N~  179 (179)
                              ++|+.|++++|+
T Consensus       388 ~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          388 LAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             --------------------
T ss_pred             ccccccccCcCCEEECCCCc
Confidence                    678888888774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.98  E-value=6.5e-11  Score=95.92  Aligned_cols=83  Identities=20%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             CCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcccchhccC-----CccCCEeecccccCcc----cCch
Q 042065           96 SMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGSIPTNLAN-----CSYLNSLKLDHNRFSG----QIPP  162 (179)
Q Consensus        96 ~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~-----l~~L~~L~l~~n~l~g----~~p~  162 (179)
                      +|+.|++++|.+++.    ++..+.. +++|++|++++|.+++..+..+..     .++|+.|++++|++++    .+|.
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            455555555554432    3334444 566666666666665433333321     4567777777777764    5666


Q ss_pred             hhcCCCCCCeEeccCCC
Q 042065          163 QLGQLGRLKSFSVANNL  179 (179)
Q Consensus       163 ~~~~l~~L~~L~l~~N~  179 (179)
                      .+..+++|++|++++|+
T Consensus       393 ~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHCCCCCEEECCSSS
T ss_pred             HHHhCCCccEEECCCCC
Confidence            66667777777777763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.93  E-value=1.4e-10  Score=93.94  Aligned_cols=107  Identities=21%  Similarity=0.251  Sum_probs=50.4

Q ss_pred             cEEEEEecCCCceee----CCccCcCCCCCcEEEcccCCCCCCChhHHHhc----ccCccEEEcccCcCCcc----cchh
Q 042065           72 KVLNLRLTDMGLKGQ----FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKL----VGFLTGLDLSSNNFSGS----IPTN  139 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~----l~~L~~L~L~~n~l~g~----~p~~  139 (179)
                      ++++|++++|.++..    ++..+..+++|++|++++|.+.+..+..+...    .++|+.|++++|.+++.    +|..
T Consensus       257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  336 (461)
T 1z7x_W          257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  336 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence            344444444444422    23333344555555555555432222222221    13555555555555532    3444


Q ss_pred             ccCCccCCEeecccccCcccCchhhcC-----CCCCCeEeccCC
Q 042065          140 LANCSYLNSLKLDHNRFSGQIPPQLGQ-----LGRLKSFSVANN  178 (179)
Q Consensus       140 ~~~l~~L~~L~l~~n~l~g~~p~~~~~-----l~~L~~L~l~~N  178 (179)
                      +..+++|+.|++++|.+++..+..+..     .++|+.|++++|
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            455566666666666665433333321     456666666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.92  E-value=3.3e-09  Score=89.80  Aligned_cols=92  Identities=27%  Similarity=0.313  Sum_probs=56.0

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++++|.++ .+|.   .+++|++|++++|.++ .+|.   . +++|++|++++|.++ .+|.   .+++|+.|+
T Consensus        61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~-l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---L-PPGLLELSIFSNPLT-HLPA---LPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---C-CTTCCEEEECSCCCC-CCCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---C-CCCCCEEECcCCcCC-CCCC---CCCCcCEEE
Confidence            34666666666665 3444   3456666666666665 4554   2 566666666666666 3444   355666777


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|+++ .+|..   +++|++|++++|+
T Consensus       128 L~~N~l~-~lp~~---l~~L~~L~Ls~N~  152 (622)
T 3g06_A          128 IFGNQLT-SLPVL---PPGLQELSVSDNQ  152 (622)
T ss_dssp             CCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred             CCCCCCC-cCCCC---CCCCCEEECcCCc
Confidence            7777666 45543   3667777777763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.77  E-value=2.4e-09  Score=85.32  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=40.4

Q ss_pred             CCCcEEEcccCCCCC----CChhHHHhcccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCccc----Cch
Q 042065           95 SSMTGLDLSSNKLYG----SLPDDISKLVGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSGQ----IPP  162 (179)
Q Consensus        95 ~~L~~L~L~~n~l~g----~~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g~----~p~  162 (179)
                      +.|+.|+|++|.++.    .++..+.. .++|++|+|++|.++.    .++..+...++|+.|++++|.++..    ++.
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            445555555555532    12222233 4555556665555542    1233444455566666666655421    223


Q ss_pred             hhcCCCCCCeEeccCC
Q 042065          163 QLGQLGRLKSFSVANN  178 (179)
Q Consensus       163 ~~~~l~~L~~L~l~~N  178 (179)
                      .+...++|++|++++|
T Consensus       234 ~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          234 AAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHCSSCCEEECTTS
T ss_pred             HHHhCCCCCEEeccCC
Confidence            3334456666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.75  E-value=1.8e-08  Score=76.72  Aligned_cols=80  Identities=25%  Similarity=0.329  Sum_probs=62.7

Q ss_pred             CCCCCcEEEcccCCCCC--CChhHHHhcccCccEEEcccCcCCcccchhccCCc--cCCEeecccccCcccCch------
Q 042065           93 NCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCS--YLNSLKLDHNRFSGQIPP------  162 (179)
Q Consensus        93 ~l~~L~~L~L~~n~l~g--~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~--~L~~L~l~~n~l~g~~p~------  162 (179)
                      +++.|+.|+|++|.+++  .+|..+.. +++|+.|+|++|++.+.  ..+..+.  +|+.|++++|.+.+.+|.      
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            47789999999999986  45566667 89999999999999853  3344444  899999999999877762      


Q ss_pred             -hhcCCCCCCeEec
Q 042065          163 -QLGQLGRLKSFSV  175 (179)
Q Consensus       163 -~~~~l~~L~~L~l  175 (179)
                       .+..+++|+.||-
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence             3667888888873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.67  E-value=1.9e-09  Score=85.86  Aligned_cols=109  Identities=23%  Similarity=0.223  Sum_probs=80.7

Q ss_pred             CcEEEEEecCCCceeeCCccC-cCCCCCcEEEcccCCCCCCChhHHHhc----ccCccEEEcccCcCCc----ccchhcc
Q 042065           71 NKVLNLRLTDMGLKGQFPRGI-RNCSSMTGLDLSSNKLYGSLPDDISKL----VGFLTGLDLSSNNFSG----SIPTNLA  141 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l-~~l~~L~~L~L~~n~l~g~~p~~~~~~----l~~L~~L~L~~n~l~g----~~p~~~~  141 (179)
                      .++++|+|++|.+.......+ ..+++|+.|+|++|.++..-...+...    .+.|+.|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            579999999998864322222 235689999999999974433444321    4679999999999874    3455567


Q ss_pred             CCccCCEeecccccCccc----CchhhcCCCCCCeEeccCCC
Q 042065          142 NCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       142 ~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N~  179 (179)
                      .+++|++|++++|.++..    ++..+...++|+.|++++|+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            889999999999998742    35566777899999999985

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.67  E-value=5.2e-09  Score=87.20  Aligned_cols=89  Identities=16%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             CcCCCCCcEEEcccCC--CCCCChhHHHhcccCccEEEcccCcCCc-ccchhccCCccCCEeecccccCccc-CchhhcC
Q 042065           91 IRNCSSMTGLDLSSNK--LYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSYLNSLKLDHNRFSGQ-IPPQLGQ  166 (179)
Q Consensus        91 l~~l~~L~~L~L~~n~--l~g~~p~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~l~~n~l~g~-~p~~~~~  166 (179)
                      +..+++|+.|+++.+.  +++..+..+...+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            4456777777776433  5555555555546778888888888775 3455567788888888888887644 3444556


Q ss_pred             CCCCCeEeccCCC
Q 042065          167 LGRLKSFSVANNL  179 (179)
Q Consensus       167 l~~L~~L~l~~N~  179 (179)
                      +++|++|++++|+
T Consensus       512 l~~L~~L~ls~n~  524 (592)
T 3ogk_B          512 LPSLRYLWVQGYR  524 (592)
T ss_dssp             CSSCCEEEEESCB
T ss_pred             cCccCeeECcCCc
Confidence            7888888888874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.63  E-value=1.9e-08  Score=72.32  Aligned_cols=109  Identities=15%  Similarity=0.232  Sum_probs=83.0

Q ss_pred             CCcEEEEEecCC-Cceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcc----c
Q 042065           70 ENKVLNLRLTDM-GLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGS----I  136 (179)
Q Consensus        70 ~~~l~~L~l~~~-~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~----~  136 (179)
                      ...+++|+|++| .+...    +...+...++|++|+|++|.+...    +...+.. .+.|++|+|++|.+...    +
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~-n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh-CCCcCEEECcCCcCCHHHHHHH
Confidence            357999999999 87632    344566678999999999999732    3334444 57899999999999842    4


Q ss_pred             chhccCCccCCEeec--ccccCccc----CchhhcCCCCCCeEeccCCC
Q 042065          137 PTNLANCSYLNSLKL--DHNRFSGQ----IPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       137 p~~~~~l~~L~~L~l--~~n~l~g~----~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ...+...+.|++|++  ++|.+...    +...+...++|++|++++|.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            566777889999999  88999743    33455566899999999884

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=8.9e-08  Score=74.57  Aligned_cols=102  Identities=12%  Similarity=0.098  Sum_probs=84.7

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCcc-EEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLT-GLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~-~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .+++.+++++|+++..-+..|.++++|+.+++.+| +. .++...+..+++|+ .+++.. .++..-+..|.+|++|+.+
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            47999999999988666677999999999999998 76 67766665599999 999998 6773445689999999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEec
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSV  175 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l  175 (179)
                      +++.|+++..-+..|.++++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999998444567889999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.53  E-value=2.9e-08  Score=82.70  Aligned_cols=19  Identities=5%  Similarity=0.204  Sum_probs=10.7

Q ss_pred             CchhhcCCCCCCeEeccCC
Q 042065          160 IPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       160 ~p~~~~~l~~L~~L~l~~N  178 (179)
                      +|..+..+++|++|++++|
T Consensus       285 l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTC
T ss_pred             HHHHHhhcCCCcEEecCCC
Confidence            3444445556666666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.38  E-value=4.9e-08  Score=81.27  Aligned_cols=88  Identities=16%  Similarity=0.224  Sum_probs=59.5

Q ss_pred             CcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhc-cCCccCCEeecccccCcccCch-hhcCCC
Q 042065           91 IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNL-ANCSYLNSLKLDHNRFSGQIPP-QLGQLG  168 (179)
Q Consensus        91 l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~L~l~~n~l~g~~p~-~~~~l~  168 (179)
                      +..+++|+.|++++ .+++..+..+...+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            44567777777766 55544445554446778888888888775444444 5678888888888888643333 334578


Q ss_pred             CCCeEeccCCC
Q 042065          169 RLKSFSVANNL  179 (179)
Q Consensus       169 ~L~~L~l~~N~  179 (179)
                      +|+.|++++|+
T Consensus       507 ~L~~L~l~~~~  517 (594)
T 2p1m_B          507 TMRSLWMSSCS  517 (594)
T ss_dssp             GSSEEEEESSC
T ss_pred             CCCEEeeeCCC
Confidence            88888888874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=2.2e-07  Score=70.67  Aligned_cols=78  Identities=21%  Similarity=0.247  Sum_probs=62.7

Q ss_pred             CcEEEEEecCCCcee--eCCccCcCCCCCcEEEcccCCCCCCChhHHHhccc--CccEEEcccCcCCcccch-------h
Q 042065           71 NKVLNLRLTDMGLKG--QFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVG--FLTGLDLSSNNFSGSIPT-------N  139 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~--~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~--~L~~L~L~~n~l~g~~p~-------~  139 (179)
                      .++++|+|++|.+.+  .+|..+..+++|+.|+|++|.+++.  ..+.. +.  .|++|+|.+|.+.+.+|.       .
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccCCcceEEccCCcCccccCcchhHHHHH
Confidence            579999999999987  4566677899999999999999843  33443 44  899999999999987763       3


Q ss_pred             ccCCccCCEeec
Q 042065          140 LANCSYLNSLKL  151 (179)
Q Consensus       140 ~~~l~~L~~L~l  151 (179)
                      +..+++|+.|+-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            667899998763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.31  E-value=1.2e-07  Score=78.86  Aligned_cols=107  Identities=20%  Similarity=0.132  Sum_probs=66.3

Q ss_pred             CcEEEEEecCCCceeeCCccCc-CCCCCcEEEcccC-CCCCC-ChhHHHhcccCccEEEcccCcCCcccchhc----cCC
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIR-NCSSMTGLDLSSN-KLYGS-LPDDISKLVGFLTGLDLSSNNFSGSIPTNL----ANC  143 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n-~l~g~-~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~----~~l  143 (179)
                      .++++|+++++.+.+..+..+. .+++|++|++++| .++.. ++..... +++|++|++++|.+++..+..+    ..+
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT-CRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH-CTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh-CCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            4678888888877655544444 5778888888877 44322 3333335 7788888888887665433333    356


Q ss_pred             ccCCEeeccccc--Ccc-cCchhhcCCCCCCeEeccCC
Q 042065          144 SYLNSLKLDHNR--FSG-QIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       144 ~~L~~L~l~~n~--l~g-~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|+.|+++.|.  +.. .++..+..+++|+.|++++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            678888887775  221 11222344677777777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.05  E-value=3.1e-06  Score=60.63  Aligned_cols=91  Identities=13%  Similarity=0.181  Sum_probs=68.8

Q ss_pred             CccCcCCCCCcEEEcccC-CCCCC----ChhHHHhcccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCcc
Q 042065           88 PRGIRNCSSMTGLDLSSN-KLYGS----LPDDISKLVGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSG  158 (179)
Q Consensus        88 p~~l~~l~~L~~L~L~~n-~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g  158 (179)
                      ...+...+.|++|+|++| .+...    +...+.. .++|++|+|++|.+..    .+...+...+.|++|++++|.+..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            344667889999999999 88632    2334444 5789999999999874    234456667899999999999974


Q ss_pred             c----CchhhcCCCCCCeEec--cCCC
Q 042065          159 Q----IPPQLGQLGRLKSFSV--ANNL  179 (179)
Q Consensus       159 ~----~p~~~~~l~~L~~L~l--~~N~  179 (179)
                      .    +...+...++|++|++  ++|.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCC
Confidence            3    4566777789999999  6674

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.04  E-value=5.9e-06  Score=64.18  Aligned_cols=83  Identities=17%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             CCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCC-EeecccccCcccCchhhcCCCCCCe
Q 042065           94 CSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN-SLKLDHNRFSGQIPPQLGQLGRLKS  172 (179)
Q Consensus        94 l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~-~L~l~~n~l~g~~p~~~~~l~~L~~  172 (179)
                      +++|+.+++++|.++ .+|...+..+.+|+.+++..| ++..-+..|.++++|+ .+.+.. .++..-+..|..+++|+.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            789999999999998 888776665999999999998 6633345689999999 999988 676344577899999999


Q ss_pred             EeccCCC
Q 042065          173 FSVANNL  179 (179)
Q Consensus       173 L~l~~N~  179 (179)
                      +++.+|+
T Consensus       302 l~l~~n~  308 (329)
T 3sb4_A          302 VLATGDK  308 (329)
T ss_dssp             EEECSSC
T ss_pred             EEeCCCc
Confidence            9997653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.02  E-value=5.4e-06  Score=59.08  Aligned_cols=87  Identities=13%  Similarity=0.064  Sum_probs=64.3

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCC-CCCCChhHHHhc---ccCccEEEcccCc-CCcccchhccCCcc
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK-LYGSLPDDISKL---VGFLTGLDLSSNN-FSGSIPTNLANCSY  145 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~g~~p~~~~~~---l~~L~~L~L~~n~-l~g~~p~~~~~l~~  145 (179)
                      -++++|+++++.++..--..+..+++|+.|+|++|. ++..--..+..+   .++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            469999999998765434557789999999999995 664333445441   2469999999985 66433345778999


Q ss_pred             CCEeeccccc-Cc
Q 042065          146 LNSLKLDHNR-FS  157 (179)
Q Consensus       146 L~~L~l~~n~-l~  157 (179)
                      |++|+++++. ++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            9999999874 54

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.91  E-value=1.1e-06  Score=69.73  Aligned_cols=55  Identities=20%  Similarity=0.156  Sum_probs=26.3

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHh-cccCccEEEcc
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISK-LVGFLTGLDLS  128 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~L~  128 (179)
                      ++++.|+++++.-. .++. + .+++|+.|++..+.++......+.. .+++|+.|+|.
T Consensus       172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            46777777766211 2222 2 2555666666555554222222321 14555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.89  E-value=1.2e-05  Score=57.31  Aligned_cols=83  Identities=8%  Similarity=0.111  Sum_probs=62.1

Q ss_pred             CCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCc-CCcccchhccCC----ccCCEeecccc-cCcccCchhhcCCC
Q 042065           95 SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNN-FSGSIPTNLANC----SYLNSLKLDHN-RFSGQIPPQLGQLG  168 (179)
Q Consensus        95 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l----~~L~~L~l~~n-~l~g~~p~~~~~l~  168 (179)
                      -.|+.||++++.++..--..+.. +++|+.|+|++|. ++..--..+..+    ++|++|+++++ +++..==..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~-~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTT-CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcC-CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            46999999999987544455666 8999999999996 664333345554    47999999997 47733224467889


Q ss_pred             CCCeEeccCC
Q 042065          169 RLKSFSVANN  178 (179)
Q Consensus       169 ~L~~L~l~~N  178 (179)
                      +|+.|+++++
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            9999999886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.84  E-value=2.5e-05  Score=61.89  Aligned_cols=108  Identities=11%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             CcEEEEEecCCCceeeCCccCc--CCCCCcEEEccc--CCCCCC-----ChhHH--HhcccCccEEEcccCcCCcccchh
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIR--NCSSMTGLDLSS--NKLYGS-----LPDDI--SKLVGFLTGLDLSSNNFSGSIPTN  139 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~--~l~~L~~L~L~~--n~l~g~-----~p~~~--~~~l~~L~~L~L~~n~l~g~~p~~  139 (179)
                      .+++.|++..+.+.......+.  .+++|+.|+|+.  |...+.     +-..+  .. +++|+.|+|.+|.+....+..
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~-~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR-FPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT-CTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC-CCCcCEEeCCCCCCchHHHHH
Confidence            5788899988776533222232  688999999863  221111     11111  13 688999999999887544433


Q ss_pred             c---cCCccCCEeecccccCccc----CchhhcCCCCCCeEeccCCC
Q 042065          140 L---ANCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       140 ~---~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +   ..+++|++|+++.|.+...    ++..+..+++|+.|++++|.
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            3   3578999999999998753    34444567889999998873

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.42  E-value=0.00034  Score=55.99  Aligned_cols=102  Identities=10%  Similarity=0.139  Sum_probs=54.3

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC----CCChhHHHhcccCccEEEcccCcCCcccc-hhccCCccC
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY----GSLPDDISKLVGFLTGLDLSSNNFSGSIP-TNLANCSYL  146 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~----g~~p~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L  146 (179)
                      +++.+.+. ++++..-...|.++++|+.+++.+|.+.    ..++...+..+++|+.+.+.. .++ .++ ..|.+|++|
T Consensus       249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L  325 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKV  325 (401)
T ss_dssp             CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSC
T ss_pred             CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCc
Confidence            34555552 2333333456667777777777666543    124443333366677777663 344 333 345666666


Q ss_pred             CEeecccccCcccCchhhcCCCCCCeEeccCC
Q 042065          147 NSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       147 ~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +.+.+..+ ++..-+..|..+ +|+.+++.+|
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence            66666443 432223445555 6666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.39  E-value=0.00052  Score=54.92  Aligned_cols=54  Identities=19%  Similarity=0.179  Sum_probs=31.5

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcc
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLS  128 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~  128 (179)
                      +++.+.+.. .+...-+..|.++++|+.+++..|.++ .+|...+. ...|+.+.+.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeC
Confidence            456666654 444334456777777777777776665 55554444 4455555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.18  E-value=0.00054  Score=46.15  Aligned_cols=56  Identities=23%  Similarity=0.306  Sum_probs=42.6

Q ss_pred             EEEecCCCce-eeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCC
Q 042065           75 NLRLTDMGLK-GQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFS  133 (179)
Q Consensus        75 ~L~l~~~~l~-~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~  133 (179)
                      .++.++++++ ..+|..+  -++|++|+|++|.++ .+|...+..+++|+.|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            5666777775 2456543  246999999999998 787766555899999999999775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.05  E-value=0.00097  Score=44.86  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=26.3

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY  108 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~  108 (179)
                      +++.|+|++|.++..-+..|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5777788887777544555667777788888777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.96  E-value=0.00094  Score=48.31  Aligned_cols=108  Identities=12%  Similarity=0.162  Sum_probs=73.2

Q ss_pred             CCcEEEEEecCC-Cceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCc----cc
Q 042065           70 ENKVLNLRLTDM-GLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSG----SI  136 (179)
Q Consensus        70 ~~~l~~L~l~~~-~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g----~~  136 (179)
                      ...+++|+|+++ .+...    +-..+..-+.|+.|+|++|.+...    +-..+.. -..|+.|+|+.|.+..    .+
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCCHHHHHHH
Confidence            357899999985 65421    233455567899999999998632    3334444 4679999999999984    23


Q ss_pred             chhccCCccCCEeecccc---cCcc----cCchhhcCCCCCCeEeccCC
Q 042065          137 PTNLANCSYLNSLKLDHN---RFSG----QIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       137 p~~~~~l~~L~~L~l~~n---~l~g----~~p~~~~~l~~L~~L~l~~N  178 (179)
                      -+.+..-+.|+.|+|++|   ++..    .+...+..-+.|+.|+++.|
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            344555667999999854   4432    13344555678899988765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.50  E-value=0.013  Score=46.36  Aligned_cols=84  Identities=15%  Similarity=0.386  Sum_probs=52.7

Q ss_pred             ccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCccc-chhccCCccCCEeecccccCcccC-chhhcC
Q 042065           89 RGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSI-PTNLANCSYLNSLKLDHNRFSGQI-PPQLGQ  166 (179)
Q Consensus        89 ~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L~l~~n~l~g~~-p~~~~~  166 (179)
                      ..|.+++.|+.+.+. +.+. .++...+..+.+|+.+.+..+ ++ .+ ...|.+|.+|+.+.+..+ ++ .+ ...|.+
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~  355 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSN  355 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTT
T ss_pred             cccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhC
Confidence            345566677777664 3344 555555544777888887654 44 33 345777888888887644 44 33 355777


Q ss_pred             CCCCCeEeccCC
Q 042065          167 LGRLKSFSVANN  178 (179)
Q Consensus       167 l~~L~~L~l~~N  178 (179)
                      +.+|+.+++.+|
T Consensus       356 C~~L~~i~~~~~  367 (394)
T 4gt6_A          356 CTALNNIEYSGS  367 (394)
T ss_dssp             CTTCCEEEESSC
T ss_pred             CCCCCEEEECCc
Confidence            788888877664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.41  E-value=0.0036  Score=45.25  Aligned_cols=87  Identities=9%  Similarity=0.168  Sum_probs=61.5

Q ss_pred             CcCCCCCcEEEcccC-CCCCC----ChhHHHhcccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCccc--
Q 042065           91 IRNCSSMTGLDLSSN-KLYGS----LPDDISKLVGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSGQ--  159 (179)
Q Consensus        91 l~~l~~L~~L~L~~n-~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g~--  159 (179)
                      +.+-+.|+.|+|++| .+...    +-..+.. -..|+.|+|++|.+..    .+.+.+..-+.|+.|+|+.|.|...  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            345578999999986 77521    2233333 4679999999999973    3334455667899999999999732  


Q ss_pred             --CchhhcCCCCCCeEeccCC
Q 042065          160 --IPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       160 --~p~~~~~l~~L~~L~l~~N  178 (179)
                        +-+.+..-+.|+.|+|++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence              2344555678999999864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.24  E-value=0.015  Score=45.52  Aligned_cols=83  Identities=16%  Similarity=0.271  Sum_probs=43.3

Q ss_pred             ccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc-hhccCCccCCEeecccccCcccC-chhhcC
Q 042065           89 RGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP-TNLANCSYLNSLKLDHNRFSGQI-PPQLGQ  166 (179)
Q Consensus        89 ~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~l~~n~l~g~~-p~~~~~  166 (179)
                      ..|.++..|+.+.+..+ +. .++...+..+.+|+.+.+..+.++ .++ ..|.++.+|+.+.+..+ ++ .+ ...|.+
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~  331 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKN  331 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT
T ss_pred             cccceeehhcccccccc-ce-eccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhC
Confidence            34455555666555432 32 344333333566666666666555 333 34666666666666543 33 22 234555


Q ss_pred             CCCCCeEecc
Q 042065          167 LGRLKSFSVA  176 (179)
Q Consensus       167 l~~L~~L~l~  176 (179)
                      +.+|+.+.+.
T Consensus       332 C~~L~~i~ip  341 (379)
T 4h09_A          332 CKALSTISYP  341 (379)
T ss_dssp             CTTCCCCCCC
T ss_pred             CCCCCEEEEC
Confidence            6666655553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.98  E-value=0.012  Score=46.41  Aligned_cols=82  Identities=16%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCccc-chhccCCccCCEeecccccCcccCchhhcCCC
Q 042065           90 GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSI-PTNLANCSYLNSLKLDHNRFSGQIPPQLGQLG  168 (179)
Q Consensus        90 ~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~  168 (179)
                      .|..+.+|+.+.+..+ +. .++...+..+.+|+.+++..+ ++ .+ ...|.++.+|+.+.+..+ ++..-...|..+.
T Consensus       292 ~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            3455556666665443 33 343333322555666665433 33 23 234555666666665544 3311123455555


Q ss_pred             CCCeEecc
Q 042065          169 RLKSFSVA  176 (179)
Q Consensus       169 ~L~~L~l~  176 (179)
                      +|+.+++.
T Consensus       367 ~L~~i~lp  374 (394)
T 4fs7_A          367 NLKKVELP  374 (394)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEEC
Confidence            66655553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.81  E-value=0.019  Score=45.29  Aligned_cols=98  Identities=17%  Similarity=0.315  Sum_probs=62.5

Q ss_pred             EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc-hhccCCccCCEeec
Q 042065           73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP-TNLANCSYLNSLKL  151 (179)
Q Consensus        73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~l  151 (179)
                      ++.+.+. +.+...-...|.++.+|+.+++..+ ++ .+....+..+.+|+.+.+..+ ++ .+. ..|.+|++|+.+.+
T Consensus       290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEE
T ss_pred             cccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEE
Confidence            4444443 2333333456888999999999764 55 566555544899999999765 55 444 57899999999999


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      .++....   ..+....+|+.+.+..|
T Consensus       365 ~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          365 SGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             SSCHHHH---HTCBCCCCC--------
T ss_pred             CCceeeh---hhhhccCCCCEEEeCCC
Confidence            9876542   45666778888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.18  E-value=0.03  Score=44.22  Aligned_cols=95  Identities=14%  Similarity=0.209  Sum_probs=51.7

Q ss_pred             EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065           73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD  152 (179)
Q Consensus        73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~  152 (179)
                      ++.+.+..+ ++..-...|.++.+|+.+++..+ ++ .+....+..+.+|+.+++..+ ++..-...|.+|++|+.+.+.
T Consensus       299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             ccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            444444332 33222445667777777777543 44 454444433677777777655 442223356777777777776


Q ss_pred             cccCcccCchhhcCCCCCCeE
Q 042065          153 HNRFSGQIPPQLGQLGRLKSF  173 (179)
Q Consensus       153 ~n~l~g~~p~~~~~l~~L~~L  173 (179)
                      .+ ++ .+...|.++++|+.+
T Consensus       375 ~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          375 KR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             GG-GG-GGGGGBCTTCEEEEE
T ss_pred             CC-CE-EhhheecCCCCCcEE
Confidence            44 22 233456666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.17  E-value=0.18  Score=39.24  Aligned_cols=86  Identities=14%  Similarity=0.234  Sum_probs=58.2

Q ss_pred             ccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc-hhccCCccCCEeecccccCcccCchhhcCC
Q 042065           89 RGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP-TNLANCSYLNSLKLDHNRFSGQIPPQLGQL  167 (179)
Q Consensus        89 ~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l  167 (179)
                      ..+.++..|+.+.+..+ ++ .+....+..+..|+.+.+..+ +. .++ ..+.++++|+.+.+..+.++..-...|.++
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c  309 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC  309 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred             ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCC
Confidence            34556677777777654 43 444444333677888887654 44 343 457889999999998888873334568888


Q ss_pred             CCCCeEeccCC
Q 042065          168 GRLKSFSVANN  178 (179)
Q Consensus       168 ~~L~~L~l~~N  178 (179)
                      .+|+.+.+..+
T Consensus       310 ~~L~~i~lp~~  320 (379)
T 4h09_A          310 VKLSSVTLPTA  320 (379)
T ss_dssp             TTCCEEECCTT
T ss_pred             CCCCEEEcCcc
Confidence            99999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.8 bits (125), Expect = 3e-09
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 126 DLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
           DL +N   G++P  L    +L+SL +  N   G+I PQ G L R    + ANN
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 5e-09
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 2/115 (1%)

Query: 47  WNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK 106
                  +       G        +K                  +    ++ GLDL +N+
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255

Query: 107 LYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIP 161
           +YG+LP  +++L  FL  L++S NN  G IP    N    +     +N+     P
Sbjct: 256 IYGTLPQGLTQLK-FLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 5e-05
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 4/98 (4%)

Query: 47  WNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNK 106
                                     +  L L +  + G  P+G+     +  L++S N 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 107 LYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCS 144
           L G +P      +        ++N      P  L  C+
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 38/157 (24%), Positives = 53/157 (33%), Gaps = 29/157 (18%)

Query: 24  EDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGL 83
           +D   L  IK  L +P     SSW    D       + GV C    +      R+     
Sbjct: 6   QDKQALLQIKKDLGNPTTL--SSWLPTTDCCN--RTWLGVLC----DTDTQTYRVN---- 53

Query: 84  KGQFPRGIRNCSSMTGLDLSSNKLYG--SLPDDISKLVGFLTGLDLSSNNFSGSIPTNLA 141
                           LDLS   L     +P  ++ L           NN  G IP  +A
Sbjct: 54  ---------------NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98

Query: 142 NCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
             + L+ L + H   SG IP  L Q+  L +   + N
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 93  NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152
           N  ++T L L  N +    P  +S L   L  L  ++N  S    ++LAN + +N L   
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 153 HNRFSGQIPPQLGQLGRLKSFSVANN 178
           HN+ S   P  L  L R+    + + 
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 4e-08
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 8/141 (5%)

Query: 39  PFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMT 98
               L                    +     E ++ N RL D G++       +  S + 
Sbjct: 313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 372

Query: 99  GLDLSSNKLYGSLPDDISKLVGF---LTGLDLSSNNFSGSIPTNLA-----NCSYLNSLK 150
            L L+   +  S    ++  +     L  LDLS+N    +    L          L  L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 151 LDHNRFSGQIPPQLGQLGRLK 171
           L    +S ++  +L  L + K
Sbjct: 433 LYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-05
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 100 LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNR 155
           LD+   +L  +   ++  L+     + L     +      I + L     L  L L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 156 FSGQIPPQLGQL 167
                   + Q 
Sbjct: 67  LGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 4/95 (4%)

Query: 72  KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGF---LTGLDLS 128
           + L+++  ++     +   +        + L    L  +   DIS  +     L  L+L 
Sbjct: 5   QSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 129 SNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQ 163
           SN         +       S K+            
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 2e-07
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 10/132 (7%)

Query: 40  FNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQFPRGIRNCSSMTG 99
            N  ++      +    +      E      +++            +         S+  
Sbjct: 229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 288

Query: 100 LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQ 159
           L++S+NKL   LP    +    L  L  S N+ +  +P    N   L  L +++N    +
Sbjct: 289 LNVSNNKL-IELPALPPR----LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-E 338

Query: 160 IPPQLGQLGRLK 171
            P     +  L+
Sbjct: 339 FPDIPESVEDLR 350

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 93  NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152
            C     +  S   L   +P D+         LDL +N  +     +  N   L++L L 
Sbjct: 9   QCHL-RVVQCSDLGL-EKVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILI 63

Query: 153 HNRFSGQIPPQLGQLGRLKSFSVANN 178
           +N+ S   P     L +L+   ++ N
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKN 89

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 95  SSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHN 154
                LDL +NK+      D   L   L  L L +N  S   P   A    L  L L  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 155 RFSGQIPPQL 164
           +    +P ++
Sbjct: 90  QLKE-LPEKM 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 11/151 (7%)

Query: 28  CLKSIKDSLEDPFNYLNSSWNFNNDTEGFICKFTGVECWHPDENKVLNLRLTDMGLKGQF 87
            LK + + +      L    N        I K         ++  V+ L    +   G  
Sbjct: 90  QLKELPEKMPKTLQELRVHENE-------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 88  PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLN 147
               +    ++ + ++   +  ++P  +      LT L L  N  +     +L   + L 
Sbjct: 143 NGAFQGMKKLSYIRIADTNI-TTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 148 SLKLDHNRFSGQIPPQLGQLGRLKSFSVANN 178
            L L  N  S      L     L+   + NN
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNN 229

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 91  IRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK 150
           +   +S   ++     L  +LP D+ K     T L LS N         L   + L  L 
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 151 LDHNRF 156
           LD    
Sbjct: 62  LDRAEL 67

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 100 LDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSG-SIPTNLANCSYLNSLKLDHNRFSG 158
                + +   L +  S     +  +DLS++     ++   L+ CS L +L L+  R S 
Sbjct: 28  FRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 85

Query: 159 QIPPQLGQLGRLKSFS 174
            I   L +   L   +
Sbjct: 86  PIVNTLAKNSNLVRLN 101

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 5/66 (7%)

Query: 93  NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD 152
              ++  L L+ N            L  +L     SS+    S+P  LA         L 
Sbjct: 223 PLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LA 277

Query: 153 HNRFSG 158
            N   G
Sbjct: 278 ANDLQG 283

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.49
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.44
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.29
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.13
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.13
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.11
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.01
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.98
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.94
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.32
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.24
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.91

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=9.6e-27  Score=179.53  Aligned_cols=153  Identities=29%  Similarity=0.447  Sum_probs=135.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCc--ccceeeecCCC-CCcEEEEEecCCCcee--eCCccCcCC
Q 042065           20 YGTKEDIACLKSIKDSLEDPFNYLNSSWNFNNDTEGFIC--KFTGVECWHPD-ENKVLNLRLTDMGLKG--QFPRGIRNC   94 (179)
Q Consensus        20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c--~w~gv~c~~~~-~~~l~~L~l~~~~l~~--~~p~~l~~l   94 (179)
                      -|.++|++||++||+.+.+|. .+. +|..    +.++|  .|.||+|+... ..+|+.|+|+++++.|  .+|+++.++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~-sW~~----~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L   75 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLS-SWLP----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGT-TCCT----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCC-CCCC----CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcC
Confidence            378999999999999998875 566 9974    34677  69999998632 3589999999999987  589999999


Q ss_pred             CCCcEEEccc-CCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeE
Q 042065           95 SSMTGLDLSS-NKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSF  173 (179)
Q Consensus        95 ~~L~~L~L~~-n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L  173 (179)
                      ++|++|+|++ |++.|.+|..+.+ +++|++|+|++|++.+..|..+..+..|+.++++.|.+.+.+|..+..++.++.+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             cccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            9999999996 8999999999999 9999999999999998888888889999999999999988899999999999999


Q ss_pred             eccCCC
Q 042065          174 SVANNL  179 (179)
Q Consensus       174 ~l~~N~  179 (179)
                      ++++|+
T Consensus       155 ~l~~n~  160 (313)
T d1ogqa_         155 TFDGNR  160 (313)
T ss_dssp             ECCSSC
T ss_pred             eccccc
Confidence            998874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=6.1e-18  Score=121.46  Aligned_cols=125  Identities=22%  Similarity=0.261  Sum_probs=106.2

Q ss_pred             CCCCcccceeeecCCC--------CCcEEEEEecCCCceeeC-CccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccE
Q 042065           54 EGFICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQF-PRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTG  124 (179)
Q Consensus        54 ~~~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~-p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~  124 (179)
                      .++.|.+..|.|....        ...+++|+|++|.+++.+ +..|..+++|++|++++|.+....+..+.. +++|++
T Consensus         4 ~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-~~~L~~   82 (192)
T d1w8aa_           4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQE   82 (192)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCE
T ss_pred             CCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-ccccce
Confidence            4577889999997422        247899999999998655 556789999999999999999666666666 899999


Q ss_pred             EEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          125 LDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       125 L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |+|++|+++...|..|.++++|++|+|++|++++..|..|..+++|+++++++|.
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            9999999996666678999999999999999996666778899999999999984

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.2e-15  Score=102.08  Aligned_cols=98  Identities=29%  Similarity=0.331  Sum_probs=69.7

Q ss_pred             EEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccc
Q 042065           75 NLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHN  154 (179)
Q Consensus        75 ~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n  154 (179)
                      .|++++|+++ .++ .+..++.|++|++++|.++ .+|+.+.. +++|+.|++++|.++ .+| .+..+++|+++++++|
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~-l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhh-hhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            5677777776 344 3677777778888887776 67766666 777788888777777 455 3677777888888777


Q ss_pred             cCcccCc--hhhcCCCCCCeEeccCCC
Q 042065          155 RFSGQIP--PQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       155 ~l~g~~p--~~~~~l~~L~~L~l~~N~  179 (179)
                      +++ .+|  ..+..+++|+++++++|.
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCc
Confidence            776 343  356677777777777763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=5.1e-14  Score=100.55  Aligned_cols=103  Identities=26%  Similarity=0.336  Sum_probs=88.6

Q ss_pred             EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeeccc
Q 042065           74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDH  153 (179)
Q Consensus        74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~  153 (179)
                      +.++.++++++ .+|..+.  +.+++|+|++|.+++.++...+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            46889999998 6887653  68999999999998666555443389999999999999988888899999999999999


Q ss_pred             ccCcccCchhhcCCCCCCeEeccCCC
Q 042065          154 NRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       154 n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      |+++...|..|..+++|++|+|++|+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ccccccCHHHHhCCCcccccccCCcc
Confidence            99996556678999999999999985

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.49  E-value=1.1e-14  Score=111.25  Aligned_cols=109  Identities=28%  Similarity=0.470  Sum_probs=99.2

Q ss_pred             CCcEEEEEecC-CCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           70 ENKVLNLRLTD-MGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        70 ~~~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      ..++++|++++ |.+.|.+|..|.++++|++|++++|.+.+..|..+.. +..|+.+++..|.+.+.+|..+..++.++.
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             Cccccccccccccccccccccccccccccchhhhccccccccccccccc-hhhhcccccccccccccCchhhccCcccce
Confidence            35789999987 8899999999999999999999999999877877777 899999999999999999999999999999


Q ss_pred             eecccccCcccCchhhcCCCCC-CeEeccCCC
Q 042065          149 LKLDHNRFSGQIPPQLGQLGRL-KSFSVANNL  179 (179)
Q Consensus       149 L~l~~n~l~g~~p~~~~~l~~L-~~L~l~~N~  179 (179)
                      +++++|.+.|.+|..+..+..+ +.+++++|+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             eecccccccccccccccccccccccccccccc
Confidence            9999999999999999988776 778887763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.8e-14  Score=98.87  Aligned_cols=100  Identities=14%  Similarity=0.229  Sum_probs=61.5

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc--hhccCCccCCE
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~~  148 (179)
                      .+++.|++++|.+. .++ .+..+++|+.|++++|.++ .+|+.+...+++|+.|++++|.++ .++  ..+..+++|++
T Consensus        41 ~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          41 DQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY  116 (162)
T ss_dssp             TCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             ccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccccccceecccccc-ccccccccccccccch
Confidence            45677777777766 333 3566677777777777776 454443322667777777777766 333  24566677777


Q ss_pred             eecccccCcccCch----hhcCCCCCCeEec
Q 042065          149 LKLDHNRFSGQIPP----QLGQLGRLKSFSV  175 (179)
Q Consensus       149 L~l~~n~l~g~~p~----~~~~l~~L~~L~l  175 (179)
                      +++++|+++ ..|.    .+..+++|++||-
T Consensus       117 L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         117 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             hhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            777777665 4442    3556667766653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.2e-13  Score=104.00  Aligned_cols=108  Identities=21%  Similarity=0.194  Sum_probs=87.7

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.+++++|.+++..+..|..+++|+.|++++|.+++..+..+.. +++|+.+++.+|++++..|..|..+++|++|+
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~-l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc-ccccchhhhhhccccccChhHhhhhhhccccc
Confidence            45788888888888655667888888999999999888433444455 88899999999998877788888899999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++.|.+.+..|..++.+++|++|++++|.
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccCEEEecCCC
Confidence            99999987667778888999999998874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.7e-13  Score=99.52  Aligned_cols=105  Identities=22%  Similarity=0.177  Sum_probs=73.6

Q ss_pred             EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065           73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD  152 (179)
Q Consensus        73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~  152 (179)
                      ++.|+++++.+....+..+..+.++++|++++|.+. .+|..+...++.++.+++++|++++..+..+..+++|++|+++
T Consensus       102 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            344444444433333333444555555555566665 4454444337889999999999986666678889999999999


Q ss_pred             cccCcccCchhhcCCCCCCeEeccCCC
Q 042065          153 HNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       153 ~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +|+++ .+|+.+..+++|+.|++++|.
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            99998 899988889999999999883

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=90.29  Aligned_cols=89  Identities=17%  Similarity=0.182  Sum_probs=49.6

Q ss_pred             CCccCcCCCCCcEEEcccC-CCCCCChhH-HHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhh
Q 042065           87 FPRGIRNCSSMTGLDLSSN-KLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQL  164 (179)
Q Consensus        87 ~p~~l~~l~~L~~L~L~~n-~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~  164 (179)
                      .|..+..+++|++|++++| .++ .++.. +.. +++|+.|++++|+++...|..|..+++|++|+|++|+++ .+|...
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~-l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~   99 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQ-HLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT   99 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCC-EECGGGSCS-CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTT
T ss_pred             CcccccCccccCeeecCCCcccc-ccCchhhcc-ccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhh
Confidence            4445555566666666544 354 44333 333 566666666666666333445566666666666666666 555544


Q ss_pred             cCCCCCCeEeccCC
Q 042065          165 GQLGRLKSFSVANN  178 (179)
Q Consensus       165 ~~l~~L~~L~l~~N  178 (179)
                      ....+|+.|++++|
T Consensus       100 ~~~~~l~~L~L~~N  113 (156)
T d2ifga3         100 VQGLSLQELVLSGN  113 (156)
T ss_dssp             TCSCCCCEEECCSS
T ss_pred             hccccccccccCCC
Confidence            44445666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=97.78  Aligned_cols=107  Identities=29%  Similarity=0.359  Sum_probs=93.1

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChh-HHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPD-DISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~-~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      .++++|++++|.+....+..+..++.|+.+++++|.++ .+|. .+.. +++|+.|++++|++++..+..+.++++|+.+
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~-~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhcc-ccchhhcccccCcccccchhhhccccccchh
Confidence            57899999999988666677888899999999999998 5654 4445 8899999999999996667788999999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++.|++++..|..|..+++|++|++++|+
T Consensus       183 ~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             hhhhccccccChhHhhhhhhcccccccccc
Confidence            999999998889999999999999999985

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.9e-12  Score=86.17  Aligned_cols=76  Identities=28%  Similarity=0.405  Sum_probs=68.7

Q ss_pred             cEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccC
Q 042065           98 TGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVAN  177 (179)
Q Consensus        98 ~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~  177 (179)
                      |+|++++|.++ .++ .+.. +++|++|++++|.++ .+|..+..+++|+.|++++|+++ .+| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~-l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQ-LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGG-GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-cccc-CCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            68999999998 776 4777 899999999999999 78988999999999999999999 566 589999999999999


Q ss_pred             CC
Q 042065          178 NL  179 (179)
Q Consensus       178 N~  179 (179)
                      |+
T Consensus        75 N~   76 (124)
T d1dcea3          75 NR   76 (124)
T ss_dssp             SC
T ss_pred             Cc
Confidence            85

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.6e-12  Score=95.10  Aligned_cols=107  Identities=23%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+.. .+..+..+++|+.|++++|.+....+..+.. +.+++.|++..|.++...+..+..++.++.++
T Consensus        77 ~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (266)
T ss_dssp             TTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccc-cccccccccccccccccccccceeecccccc-ccccccccccccccceeccccccccccchhcc
Confidence            345555555555442 3344455555555555555554222222223 56666777777777744444566788999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++++..+..+..+++|++|++++|+
T Consensus       155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         155 LANNNLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccccCccccccccccceeecccCC
Confidence            99999996556678889999999999985

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.1e-12  Score=89.83  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccch-hccCCccCCEe
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSL  149 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L  149 (179)
                      .++++|+|++|+++ .++..+..+++|+.|++++|.++ .++ .+.. +++|++|++++|.++ .+|. .+..+++|++|
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~-l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPL-LRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCC-CSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-Cccc-Ccchhhhhccccccc-CCCccccccccccccc
Confidence            46899999999998 56766678999999999999998 664 3555 899999999999999 5554 45679999999


Q ss_pred             ecccccCcccCc--hhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIP--PQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p--~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++|+++ .++  ..+..+++|+++++++|.
T Consensus        93 ~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          93 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSG
T ss_pred             eecccccc-ccccccccccccccchhhcCCCc
Confidence            99999998 555  357889999999999983

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=5.8e-12  Score=95.38  Aligned_cols=106  Identities=19%  Similarity=0.265  Sum_probs=86.7

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.|++++|...+..+..+..++.++.|++++|.+.+..+..+.. +++|++|+|++|.++ .+|..+..+++|++|+
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~-l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  248 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc-cccceeeeccccccc-ccccccccccCCCEEE
Confidence            56888899988888888888888999999999999998555555666 889999999999998 7888899999999999


Q ss_pred             cccccCcccCchh-------hcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQ-------LGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~-------~~~l~~L~~L~l~~N~  179 (179)
                      +++|+++ .++..       ...+.+|+.|++++|.
T Consensus       249 Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         249 LHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCCCccC-ccChhhccCcchhcccCCCCEEECCCCc
Confidence            9999988 55432       2346778899998873

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.24  E-value=1.2e-11  Score=93.63  Aligned_cols=104  Identities=27%  Similarity=0.365  Sum_probs=91.3

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .+++.++++++++. .+|..  .+++|+.|++++|...+..+..+.. ++.++.|++++|.+.+..+..+..+++|+.|+
T Consensus       150 ~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         150 KKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             TTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             cccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhc-cccccccccccccccccccccccccccceeee
Confidence            46888999999877 45554  3689999999999999777777777 88999999999999977677889999999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|+++ .+|..+..+++|++|++++|+
T Consensus       226 L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         226 LNNNKLV-KVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred             ccccccc-ccccccccccCCCEEECCCCc
Confidence            9999999 789999999999999999985

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=2.8e-13  Score=97.37  Aligned_cols=102  Identities=18%  Similarity=0.252  Sum_probs=85.7

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..++++|++++|.++ .++ .+..+++|+.|++++|.++ .+|..... ++.|+.|++++|.++ .++ .+..+++|+.|
T Consensus        47 L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIA-SLS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEEECSEEECC-CHH-HHHHHHHSSEE
T ss_pred             ccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccc-ccccccccccccccc-ccc-ccccccccccc
Confidence            357899999999987 454 4888999999999999998 78765555 678999999999998 554 47788999999


Q ss_pred             ecccccCcccCc--hhhcCCCCCCeEeccCC
Q 042065          150 KLDHNRFSGQIP--PQLGQLGRLKSFSVANN  178 (179)
Q Consensus       150 ~l~~n~l~g~~p--~~~~~l~~L~~L~l~~N  178 (179)
                      ++++|+++ .++  ..+..+++|+.|++++|
T Consensus       121 ~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         121 YMSNNKIT-NWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EESEEECC-CHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccchhc-cccccccccCCCccceeecCCC
Confidence            99999998 555  46889999999999988

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.3e-11  Score=82.53  Aligned_cols=84  Identities=20%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             CcEEEEEecCCC-ceeeCCccCcCCCCCcEEEcccCCCCCCCh-hHHHhcccCccEEEcccCcCCcccchhccCCccCCE
Q 042065           71 NKVLNLRLTDMG-LKGQFPRGIRNCSSMTGLDLSSNKLYGSLP-DDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~-l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p-~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~  148 (179)
                      .++++|++.+++ ++..-+..|.++++|+.|++++|.++ .++ ..+.. +++|++|+|++|+++ .+|.......+|+.
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~-l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~  107 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHF-TPRLSRLNLSFNALE-SLSWKTVQGLSLQE  107 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGS-CSCCCEEECCSSCCS-CCCSTTTCSCCCCE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccc-cccccceeccCCCCc-ccChhhhccccccc
Confidence            578999998764 77555677999999999999999998 564 44555 999999999999999 77776555568999


Q ss_pred             eecccccCc
Q 042065          149 LKLDHNRFS  157 (179)
Q Consensus       149 L~l~~n~l~  157 (179)
                      |++++|++.
T Consensus       108 L~L~~Np~~  116 (156)
T d2ifga3         108 LVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCC
T ss_pred             cccCCCccc
Confidence            999999884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=8e-11  Score=90.97  Aligned_cols=82  Identities=28%  Similarity=0.416  Sum_probs=69.0

Q ss_pred             cCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecccccCcccCchhhcCCCC
Q 042065           90 GIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGR  169 (179)
Q Consensus        90 ~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~  169 (179)
                      .+..++.++.|++++|.+++ ++. +.. +++|+.|++++|+++ .++ .+.++++|++|++++|++++ +++ +.++++
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~-l~~-l~~-l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~-l~~-l~~l~~  374 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISD-ISP-VSS-LTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISD-LTP-LANLTR  374 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSC-CGG-GGG-CTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCB-CGG-GTTCTT
T ss_pred             ccchhcccCeEECCCCCCCC-Ccc-ccc-CCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCC-Chh-hccCCC
Confidence            35677889999999999984 543 566 899999999999998 555 58899999999999999995 443 889999


Q ss_pred             CCeEeccCC
Q 042065          170 LKSFSVANN  178 (179)
Q Consensus       170 L~~L~l~~N  178 (179)
                      |+.|++++|
T Consensus       375 L~~L~L~~N  383 (384)
T d2omza2         375 ITQLGLNDQ  383 (384)
T ss_dssp             CSEEECCCE
T ss_pred             CCEeeCCCC
Confidence            999999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=1.7e-10  Score=82.28  Aligned_cols=100  Identities=24%  Similarity=0.411  Sum_probs=77.9

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      .++++|++++|.+++. ++ +.++++|+.|++++|.+. .++. +.. ++.|+.++++++.... + ..+..+++|+.++
T Consensus        62 ~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~~-l~~-l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~  134 (199)
T d2omxa2          62 NNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DITP-LAN-LTNLTGLTLFNNQITD-I-DPLKNLTNLNRLE  134 (199)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG-GTT-CTTCSEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             CCcCcCccccccccCc-cc-ccCCcccccccccccccc-cccc-ccc-cccccccccccccccc-c-cccchhhhhHHhh
Confidence            5788889988888753 33 788888999999988886 5653 555 7888999998888773 3 3467888999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      +++|++. .+| .+..+++|+.|++.+|+
T Consensus       135 l~~n~l~-~~~-~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         135 LSSNTIS-DIS-ALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             CCSSCCC-CCG-GGTTCTTCSEEECCSSC
T ss_pred             hhhhhhc-ccc-ccccccccccccccccc
Confidence            9999887 444 57788899999998874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=1.7e-10  Score=82.92  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=17.1

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCC
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLY  108 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~  108 (179)
                      ++++|++++|.+++ ++ .+..+++|++|++++|.++
T Consensus        69 ~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          69 NVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             CCCEEeCCCccccC-cc-ccccCcccccccccccccc
Confidence            45555555555543 22 2344555555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=3.6e-10  Score=80.50  Aligned_cols=101  Identities=23%  Similarity=0.414  Sum_probs=81.7

Q ss_pred             CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEe
Q 042065           70 ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSL  149 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L  149 (179)
                      ..++++|++++|.+. .++ .+.+++.|+.|+++++.+. .++ .+.. +++|+.+++++|++. .++ .+..+++|+.|
T Consensus        83 l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~-~~~-~~~~-l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L  155 (199)
T d2omxa2          83 LTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQIT-DID-PLKN-LTNLNRLELSSNTIS-DIS-ALSGLTSLQQL  155 (199)
T ss_dssp             CTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCC-CCG-GGTT-CTTCSEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             Ccccccccccccccc-ccc-ccccccccccccccccccc-ccc-ccch-hhhhHHhhhhhhhhc-ccc-ccccccccccc
Confidence            357899999999876 344 4788999999999999887 443 3555 889999999999988 454 57889999999


Q ss_pred             ecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          150 KLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       150 ~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++.+|+++ .++ .++.+++|++|++++|+
T Consensus       156 ~l~~n~l~-~l~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         156 NFSSNQVT-DLK-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             ECCSSCCC-CCG-GGTTCTTCCEEECCSSC
T ss_pred             cccccccc-CCc-cccCCCCCCEEECCCCC
Confidence            99999998 454 48889999999999885

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=8.8e-10  Score=79.14  Aligned_cols=99  Identities=29%  Similarity=0.382  Sum_probs=75.1

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      ..++.|+++++.+.. ++ .+..+++|++|++++|.++ .++. +.. +++|+.|++++|+++ .+| .+..+++|+.++
T Consensus        46 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~-~l~~-~~~-l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LAN-LKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred             cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCcccc-Cccc-ccc-Ccccccccccccccc-ccc-cccccccccccc
Confidence            358899999999874 33 3788999999999999998 5653 456 899999999999999 566 478889999999


Q ss_pred             cccccCcccCchhhcCCCCCCeEeccCC
Q 042065          151 LDHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       151 l~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      +++|.+. .++ .+..++.++.+++++|
T Consensus       119 l~~~~~~-~~~-~l~~l~~l~~l~~~~n  144 (210)
T d1h6ta2         119 LEHNGIS-DIN-GLVHLPQLESLYLGNN  144 (210)
T ss_dssp             CTTSCCC-CCG-GGGGCTTCCEEECCSS
T ss_pred             ccccccc-ccc-cccccccccccccccc
Confidence            9888776 332 3444455555554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.98  E-value=7.7e-10  Score=80.15  Aligned_cols=96  Identities=21%  Similarity=0.293  Sum_probs=71.2

Q ss_pred             EEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeecc
Q 042065           73 VLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKLD  152 (179)
Q Consensus        73 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l~  152 (179)
                      +..+.++++.+..  ...+..+++|+.|++++|.+. ..+ .+.+ +++|+.|++++|+++ .+|. +..+++|++|+++
T Consensus       131 ~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~-~~~-~l~~-l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         131 LQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS-DLT-PLAN-LSKLTTLKADDNKIS-DISP-LASLPNLIEVHLK  203 (227)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCC-CCG-GGTT-CTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECT
T ss_pred             hhhhhchhhhhch--hhhhccccccccccccccccc-cch-hhcc-cccceecccCCCccC-CChh-hcCCCCCCEEECc
Confidence            3444444444332  223567788999999999887 333 2566 889999999999988 4554 7889999999999


Q ss_pred             cccCcccCchhhcCCCCCCeEeccC
Q 042065          153 HNRFSGQIPPQLGQLGRLKSFSVAN  177 (179)
Q Consensus       153 ~n~l~g~~p~~~~~l~~L~~L~l~~  177 (179)
                      +|+++ .+|+ +.++++|+.|++++
T Consensus       204 ~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         204 NNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             TSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             CCcCC-CCcc-cccCCCCCEEEeeC
Confidence            99998 5653 78899999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.2e-10  Score=80.77  Aligned_cols=102  Identities=15%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             CCcccceeeecCCC--------CCcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEc
Q 042065           56 FICKFTGVECWHPD--------ENKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDL  127 (179)
Q Consensus        56 ~~c~w~gv~c~~~~--------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L  127 (179)
                      +.|....+.|....        ...+++|++++|.++...+..|.++++|++|++++|.+...+|...+..++.++++.+
T Consensus         6 C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           6 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             EEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            45677778886321        2468999999999985555578999999999999999876565544333788888887


Q ss_pred             cc-CcCCcccchhccCCccCCEeecccccCc
Q 042065          128 SS-NNFSGSIPTNLANCSYLNSLKLDHNRFS  157 (179)
Q Consensus       128 ~~-n~l~g~~p~~~~~l~~L~~L~l~~n~l~  157 (179)
                      .. |.+....+..+..+++|+++++++|.+.
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccccchhhhc
Confidence            64 5677566667889999999999999887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.93  E-value=1.9e-11  Score=87.54  Aligned_cols=100  Identities=23%  Similarity=0.194  Sum_probs=80.6

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccc--hhccCCccCCE
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIP--TNLANCSYLNS  148 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~~  148 (179)
                      .+++.|++++|.++ .+|..+..++.|+.|++++|.++ .++ .+.. +++|+.|++++|+++ .++  ..+..+++|+.
T Consensus        70 ~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~-l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~  144 (198)
T d1m9la_          70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEK-LVNLRVLYMSNNKIT-NWGEIDKLAALDKLED  144 (198)
T ss_dssp             TTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHH-HHHSSEEEESEEECC-CHHHHHHHTTTTTCSE
T ss_pred             ccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccc-cccccccccccchhc-cccccccccCCCccce
Confidence            57999999999987 56655555678999999999998 554 4677 889999999999998 555  46889999999


Q ss_pred             eecccccCcccCchh----------hcCCCCCCeEec
Q 042065          149 LKLDHNRFSGQIPPQ----------LGQLGRLKSFSV  175 (179)
Q Consensus       149 L~l~~n~l~g~~p~~----------~~~l~~L~~L~l  175 (179)
                      |++++|++....+..          +..+++|+.||-
T Consensus       145 L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             EEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             eecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            999999987433321          567899999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=2.2e-09  Score=82.70  Aligned_cols=102  Identities=24%  Similarity=0.301  Sum_probs=71.8

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCC--------------------hhHHHhcccCccEEEcccC
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSL--------------------PDDISKLVGFLTGLDLSSN  130 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~--------------------p~~~~~~l~~L~~L~L~~n  130 (179)
                      .+++.+++++|.+.+..  .+..+++|+.|+++++.+.+..                    +..+.. ++.++.|++++|
T Consensus       241 ~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~-~~~l~~L~ls~n  317 (384)
T d2omza2         241 TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN-LKNLTYLTLYFN  317 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGG-CTTCSEEECCSS
T ss_pred             cccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccccch-hcccCeEECCCC
Confidence            34666666666665322  2455566666666655554211                    123444 778999999999


Q ss_pred             cCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          131 NFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       131 ~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ++++ ++ .+..+++|+.|++++|+++ .+| .+..+++|++|++++|+
T Consensus       318 ~l~~-l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         318 NISD-IS-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CCSC-CG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSC
T ss_pred             CCCC-Cc-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCc
Confidence            9985 44 3788999999999999998 555 68899999999999985

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.82  E-value=5.7e-09  Score=79.12  Aligned_cols=92  Identities=27%  Similarity=0.382  Sum_probs=65.4

Q ss_pred             cEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEeec
Q 042065           72 KVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLKL  151 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~l  151 (179)
                      ++++|++++++++ .+|+.   +++|++|++++|.++ .+|..    +.+|+.|++.+|+++ .++..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            4677888888876 56653   467888888888887 77754    456788888888777 55431   245788888


Q ss_pred             ccccCcccCchhhcCCCCCCeEeccCC
Q 042065          152 DHNRFSGQIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       152 ~~n~l~g~~p~~~~~l~~L~~L~l~~N  178 (179)
                      ++|.+. .+|. ++.+++|++|++++|
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSS
T ss_pred             cccccc-cccc-hhhhccceeeccccc
Confidence            888887 5664 567778888887765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=9.2e-09  Score=74.72  Aligned_cols=101  Identities=17%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             EEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhH-HHhcccCccEEEcccCcCCcccch-hccCCccCCEeec
Q 042065           74 LNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDD-ISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSLKL  151 (179)
Q Consensus        74 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~-~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~l  151 (179)
                      +.++.++.+++ .+|..+.  +++++|++++|.++ .+|.. +.. +++|++|++++|.+...+|. .+..++.++.+.+
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~-l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTT-CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhc-cchhhhhhhccccccceeeccccccccccccccc
Confidence            46778888887 7787653  57999999999998 67764 555 89999999999998865554 5788999999987


Q ss_pred             cc-ccCcccCchhhcCCCCCCeEeccCCC
Q 042065          152 DH-NRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       152 ~~-n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      .. |++....+..+..+++|+++++++|+
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             cccccccccccccccccccccccccchhh
Confidence            64 67776667778999999999998874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=4e-08  Score=70.82  Aligned_cols=102  Identities=30%  Similarity=0.391  Sum_probs=69.2

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCC--------------------ChhHHHhcccCccEEEcccC
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGS--------------------LPDDISKLVGFLTGLDLSSN  130 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~--------------------~p~~~~~~l~~L~~L~L~~n  130 (179)
                      .+++.++++++.++ .++ .+..++.|+.++++++...+.                    ....+.. +++|+.|++.+|
T Consensus        85 ~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n  161 (227)
T d1h6ua2          85 TKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAG-LTNLQYLSIGNA  161 (227)
T ss_dssp             CSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG-CTTCCEEECCSS
T ss_pred             cccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhhhchhhhhchhhhhcc-cccccccccccc
Confidence            34556666665554 222 344555555555555543321                    1112344 778999999999


Q ss_pred             cCCcccchhccCCccCCEeecccccCcccCchhhcCCCCCCeEeccCCC
Q 042065          131 NFSGSIPTNLANCSYLNSLKLDHNRFSGQIPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       131 ~l~g~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~l~~N~  179 (179)
                      .+.. .+ .+..+++|+.|++++|+++ .+|. +..+++|++|++++|+
T Consensus       162 ~~~~-~~-~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         162 QVSD-LT-PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             CCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSC
T ss_pred             cccc-ch-hhcccccceecccCCCccC-CChh-hcCCCCCCEEECcCCc
Confidence            8874 33 3788999999999999998 5554 7889999999999985

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.2e-08  Score=79.60  Aligned_cols=107  Identities=17%  Similarity=0.226  Sum_probs=77.4

Q ss_pred             cEEEEEecCCCceeeC-CccCcCCCCCcEEEcccCCCCC----CChhHHHhcccCccEEEcccCcCCc----ccchhcc-
Q 042065           72 KVLNLRLTDMGLKGQF-PRGIRNCSSMTGLDLSSNKLYG----SLPDDISKLVGFLTGLDLSSNNFSG----SIPTNLA-  141 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~-p~~l~~l~~L~~L~L~~n~l~g----~~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~~~-  141 (179)
                      +|+.|++++++++..- ..-+..+++++.|+|++|.++.    .+...+.. +++|++|+|++|.++.    .+...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~-~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHT-CTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhc-CCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            6899999999987431 2234456889999999998872    23444556 7889999999998862    1222232 


Q ss_pred             CCccCCEeecccccCccc----CchhhcCCCCCCeEeccCCC
Q 042065          142 NCSYLNSLKLDHNRFSGQ----IPPQLGQLGRLKSFSVANNL  179 (179)
Q Consensus       142 ~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~l~~N~  179 (179)
                      ...+|+.|++++|+++..    ++..+..+++|++|++++|+
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            234799999999998743    45667788999999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1e-07  Score=65.37  Aligned_cols=83  Identities=25%  Similarity=0.260  Sum_probs=61.9

Q ss_pred             cCcCCCCCcEEEcccCCCCCC--ChhHHHhcccCccEEEcccCcCCcccch-hccCCccCCEeecccccCcccCch----
Q 042065           90 GIRNCSSMTGLDLSSNKLYGS--LPDDISKLVGFLTGLDLSSNNFSGSIPT-NLANCSYLNSLKLDHNRFSGQIPP----  162 (179)
Q Consensus        90 ~l~~l~~L~~L~L~~n~l~g~--~p~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~l~~n~l~g~~p~----  162 (179)
                      .+..++.|++|++++|.++..  ++..+.. +++|+.|++++|.++ .+++ .......|+.+++++|++......    
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~-l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHH-STTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhh-CCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            345678899999999999832  2445666 899999999999999 5554 333456789999999999855432    


Q ss_pred             ---hhcCCCCCCeEe
Q 042065          163 ---QLGQLGRLKSFS  174 (179)
Q Consensus       163 ---~~~~l~~L~~L~  174 (179)
                         .+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               255788998886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.32  E-value=1e-06  Score=66.24  Aligned_cols=76  Identities=28%  Similarity=0.414  Sum_probs=63.1

Q ss_pred             CcEEEEEecCCCceeeCCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcccchhccCCccCCEee
Q 042065           71 NKVLNLRLTDMGLKGQFPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGSIPTNLANCSYLNSLK  150 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~  150 (179)
                      +++++|++++|.++ .+|..   +.+|+.|++++|.++ .++.    +.+.|++|++++|.+. .+|. ++.+++|++++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIID  126 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hccccccccccccccc-cccc-hhhhccceeec
Confidence            57899999999998 67765   467999999999987 6653    2457999999999998 6775 67899999999


Q ss_pred             cccccCc
Q 042065          151 LDHNRFS  157 (179)
Q Consensus       151 l~~n~l~  157 (179)
                      ++++.+.
T Consensus       127 l~~~~~~  133 (353)
T d1jl5a_         127 VDNNSLK  133 (353)
T ss_dssp             CCSSCCS
T ss_pred             ccccccc
Confidence            9988876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.5e-07  Score=67.51  Aligned_cols=84  Identities=24%  Similarity=0.268  Sum_probs=52.0

Q ss_pred             CCCcEEEcccC--CCCCCChhHHHhcccCccEEEcccCc-CCcccchhccCCccCCEeeccc-ccCcccCchhhcCCCCC
Q 042065           95 SSMTGLDLSSN--KLYGSLPDDISKLVGFLTGLDLSSNN-FSGSIPTNLANCSYLNSLKLDH-NRFSGQIPPQLGQLGRL  170 (179)
Q Consensus        95 ~~L~~L~L~~n--~l~g~~p~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~L~l~~-n~l~g~~p~~~~~l~~L  170 (179)
                      +.|+.|+++++  .++..-...+...+++|++|++++|. +++.....+..+++|++|++++ +.++..-...++.+++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            45666666543  22211112222226778888887753 5655666677788888888887 46665555567777888


Q ss_pred             CeEeccCC
Q 042065          171 KSFSVANN  178 (179)
Q Consensus       171 ~~L~l~~N  178 (179)
                      +.|+++++
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            88887664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.3e-07  Score=68.25  Aligned_cols=108  Identities=20%  Similarity=0.350  Sum_probs=79.0

Q ss_pred             CCcEEEEEecCCCceee-CCccCcCCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccC-cCCc-ccchhccCCccC
Q 042065           70 ENKVLNLRLTDMGLKGQ-FPRGIRNCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSN-NFSG-SIPTNLANCSYL  146 (179)
Q Consensus        70 ~~~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n-~l~g-~~p~~~~~l~~L  146 (179)
                      ..++++|+++++.+... +...+..+++|++|+++++.+++..+..+.+ +++|+.|+++++ .++. .+..-...+++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhc
Confidence            35789999999887643 3444678899999999999998778888888 899999999986 4542 123334578999


Q ss_pred             CEeecccc-cCcc-cCchhhc-CCCCCCeEeccCC
Q 042065          147 NSLKLDHN-RFSG-QIPPQLG-QLGRLKSFSVANN  178 (179)
Q Consensus       147 ~~L~l~~n-~l~g-~~p~~~~-~l~~L~~L~l~~N  178 (179)
                      ++|+++++ .++. .++..+. ..+.|+.|+++++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccccccccccccccchhhhcccccccchhhhccc
Confidence            99999985 4542 1233333 3468999998763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.12  E-value=4e-07  Score=69.31  Aligned_cols=108  Identities=17%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             CcEEEEEecCCCceee-----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcc----cc
Q 042065           71 NKVLNLRLTDMGLKGQ-----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGS----IP  137 (179)
Q Consensus        71 ~~l~~L~l~~~~l~~~-----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~----~p  137 (179)
                      ..++.|++++|.+...     +...+..+++|+.|++++|.++..    +...+.. .++|++|++++|.+++.    +-
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~-~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc-cccchhhhhhcCccCchhhHHHH
Confidence            4578888888876531     233456678888888888887522    2233344 67788888888887743    22


Q ss_pred             hhccC--CccCCEeecccccCccc----Cchhhc-CCCCCCeEeccCCC
Q 042065          138 TNLAN--CSYLNSLKLDHNRFSGQ----IPPQLG-QLGRLKSFSVANNL  179 (179)
Q Consensus       138 ~~~~~--l~~L~~L~l~~n~l~g~----~p~~~~-~l~~L~~L~l~~N~  179 (179)
                      ..+..  .+.|++|++++|+++..    +...+. ++++|+.|++++|+
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            22322  35688888888887632    223332 46778888888874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3.2e-07  Score=71.38  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             cEEEEEecCCCceeeCCc----cCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCc----ccchh
Q 042065           72 KVLNLRLTDMGLKGQFPR----GIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSG----SIPTN  139 (179)
Q Consensus        72 ~l~~L~l~~~~l~~~~p~----~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~  139 (179)
                      .++.++++++.+......    .+...++|++|+|++|.++..    ++..+....+.|++|+|++|.++.    .++..
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  392 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  392 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence            355555555554422111    122334566666666665421    222222213346666666666652    23334


Q ss_pred             ccCCccCCEeecccccCcccCch----hhc-CCCCCCeEeccCC
Q 042065          140 LANCSYLNSLKLDHNRFSGQIPP----QLG-QLGRLKSFSVANN  178 (179)
Q Consensus       140 ~~~l~~L~~L~l~~n~l~g~~p~----~~~-~l~~L~~L~l~~N  178 (179)
                      +..+++|++|++++|+++..-..    .+. ....|+.|++.+|
T Consensus       393 l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence            44556666666666666532111    121 2234666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.5e-07  Score=64.59  Aligned_cols=84  Identities=17%  Similarity=0.069  Sum_probs=57.5

Q ss_pred             CCCCCcEEEcccCCCCCCChhHHHhcccCccEEEcccCcCCcc--cchhccCCccCCEeecccccCcccCch-hhcCCCC
Q 042065           93 NCSSMTGLDLSSNKLYGSLPDDISKLVGFLTGLDLSSNNFSGS--IPTNLANCSYLNSLKLDHNRFSGQIPP-QLGQLGR  169 (179)
Q Consensus        93 ~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~L~~n~l~g~--~p~~~~~l~~L~~L~l~~n~l~g~~p~-~~~~l~~  169 (179)
                      .+..+..+...++... .++..... ++.|++|+|++|+++..  ++..+..+++|+.|++++|.++ .+++ .......
T Consensus        40 ~~~~~~~l~~~~~~~~-~l~~~~~~-~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~  116 (162)
T d1koha1          40 AQNIDVVLNRRSSMAA-TLRIIEEN-IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLK  116 (162)
T ss_dssp             TTTCCCCTTSHHHHHH-HHHHHHHH-CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCC
T ss_pred             hccchhhcchhhhHhh-hhHHHHHh-CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccc
Confidence            3333444444444332 33333345 89999999999999842  3455678999999999999999 5554 3334567


Q ss_pred             CCeEeccCCC
Q 042065          170 LKSFSVANNL  179 (179)
Q Consensus       170 L~~L~l~~N~  179 (179)
                      |+.+++++|.
T Consensus       117 L~~L~L~~Np  126 (162)
T d1koha1         117 LEELWLDGNS  126 (162)
T ss_dssp             CSSCCCTTST
T ss_pred             cceeecCCCC
Confidence            9999999883

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.99  E-value=8.1e-07  Score=67.53  Aligned_cols=88  Identities=17%  Similarity=0.218  Sum_probs=54.0

Q ss_pred             CcCCCCCcEEEcccCCCCCC-----ChhHHHhcccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCcccCc
Q 042065           91 IRNCSSMTGLDLSSNKLYGS-----LPDDISKLVGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSGQIP  161 (179)
Q Consensus        91 l~~l~~L~~L~L~~n~l~g~-----~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g~~p  161 (179)
                      +...+.|+.|++++|.+...     +...+.. .++|+.|++++|.++.    .+...+..+++|++|++++|.++..-.
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcc-hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence            34456778888888777521     1112233 5678888888887653    234456677788888888887764322


Q ss_pred             ----hhhcC--CCCCCeEeccCCC
Q 042065          162 ----PQLGQ--LGRLKSFSVANNL  179 (179)
Q Consensus       162 ----~~~~~--l~~L~~L~l~~N~  179 (179)
                          ..+..  .+.|++|++++|+
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHHHhhhccCCCCCEEECCCCc
Confidence                22222  3567888888774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=1.2e-05  Score=54.88  Aligned_cols=108  Identities=14%  Similarity=0.164  Sum_probs=73.1

Q ss_pred             CCcEEEEEecCC-Cceee----CCccCcCCCCCcEEEcccCCCCCC----ChhHHHhcccCccEEEcccCcCCcc----c
Q 042065           70 ENKVLNLRLTDM-GLKGQ----FPRGIRNCSSMTGLDLSSNKLYGS----LPDDISKLVGFLTGLDLSSNNFSGS----I  136 (179)
Q Consensus        70 ~~~l~~L~l~~~-~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g~----~  136 (179)
                      .+++++|+|+++ .+...    +-..+...+.|+.|++++|.+...    +-..+.. .+.|++|++++|.++..    +
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~-n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhh-cccccceeeehhhcchHHHHHH
Confidence            357899999874 34321    223455678899999999988632    2234444 67899999999988742    2


Q ss_pred             chhccCCccCCEeecccccCcc-------cCchhhcCCCCCCeEeccCC
Q 042065          137 PTNLANCSYLNSLKLDHNRFSG-------QIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       137 p~~~~~l~~L~~L~l~~n~l~g-------~~p~~~~~l~~L~~L~l~~N  178 (179)
                      -..+...++|++|++++|.+..       .+...+...++|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            3346667889999998886541       12344555678888888654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=8.8e-05  Score=50.44  Aligned_cols=85  Identities=9%  Similarity=0.180  Sum_probs=61.1

Q ss_pred             CCCCCcEEEcccC-CCCCC----ChhHHHhcccCccEEEcccCcCCc----ccchhccCCccCCEeecccccCccc----
Q 042065           93 NCSSMTGLDLSSN-KLYGS----LPDDISKLVGFLTGLDLSSNNFSG----SIPTNLANCSYLNSLKLDHNRFSGQ----  159 (179)
Q Consensus        93 ~l~~L~~L~L~~n-~l~g~----~p~~~~~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~l~~n~l~g~----  159 (179)
                      +.+.|+.|+|+++ .++..    +-..+.. .+.|+.|+|++|.+..    .+...+...+.|+.|++++|.++..    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~-n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhh-CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            4578999999974 45422    1123334 5679999999999873    2334456678999999999999742    


Q ss_pred             CchhhcCCCCCCeEeccCC
Q 042065          160 IPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       160 ~p~~~~~l~~L~~L~l~~N  178 (179)
                      +-..+...++|++|++++|
T Consensus        92 l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCC
Confidence            2234667788999999887

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.24  E-value=8.8e-05  Score=50.23  Aligned_cols=108  Identities=14%  Similarity=0.213  Sum_probs=73.5

Q ss_pred             CCcEEEEEecCC-Cceee----CCccCcCCCCCcEEEcccCCCCCCChh----HHHhcccCccEEEcccCcCCcc----c
Q 042065           70 ENKVLNLRLTDM-GLKGQ----FPRGIRNCSSMTGLDLSSNKLYGSLPD----DISKLVGFLTGLDLSSNNFSGS----I  136 (179)
Q Consensus        70 ~~~l~~L~l~~~-~l~~~----~p~~l~~l~~L~~L~L~~n~l~g~~p~----~~~~~l~~L~~L~L~~n~l~g~----~  136 (179)
                      .+.+++|+++++ .+...    +-..+...++|++|++++|.++...-.    .+.. .+.++.+++.+|.+...    +
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~-~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhh-cccchhhhhccccccchhHHHH
Confidence            357899999874 45421    233456778999999999988743222    3334 67899999999988632    3


Q ss_pred             chhccCCccCCEeec--ccccCcc----cCchhhcCCCCCCeEeccCC
Q 042065          137 PTNLANCSYLNSLKL--DHNRFSG----QIPPQLGQLGRLKSFSVANN  178 (179)
Q Consensus       137 p~~~~~l~~L~~L~l--~~n~l~g----~~p~~~~~l~~L~~L~l~~N  178 (179)
                      -..+...++|+.++|  +.|++..    .+...+...+.|+.|++..+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            345667788887655  4667752    23445667789999998765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.91  E-value=0.0049  Score=41.13  Aligned_cols=84  Identities=13%  Similarity=0.198  Sum_probs=58.4

Q ss_pred             cCCCCCcEEEccc-CCCCCCCh----hHHHhcccCccEEEcccCcCCcc----cchhccCCccCCEeecccccCccc---
Q 042065           92 RNCSSMTGLDLSS-NKLYGSLP----DDISKLVGFLTGLDLSSNNFSGS----IPTNLANCSYLNSLKLDHNRFSGQ---  159 (179)
Q Consensus        92 ~~l~~L~~L~L~~-n~l~g~~p----~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~l~~n~l~g~---  159 (179)
                      .+.+.|++|++++ +.++...-    ..+.. .++|++|++++|.++..    +-..+...++++.++++.|.+...   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~-n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhc-CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            4568899999997 45652222    22334 67899999999998742    223456678999999999988632   


Q ss_pred             -CchhhcCCCCCCeEecc
Q 042065          160 -IPPQLGQLGRLKSFSVA  176 (179)
Q Consensus       160 -~p~~~~~l~~L~~L~l~  176 (179)
                       +-..+...++|+.+++.
T Consensus        93 ~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          93 ALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHGGGGCSSCCEEECC
T ss_pred             HHHHHHHhCccccEEeec
Confidence             23456677888877665