Citrus Sinensis ID: 042073

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS
cccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccEEEEccccccccccccccEEEccEEEEEccccEEEEcccccccccccccccccccccccccccEEEccc
cccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHccccEEEEEcccccHHHccHHHHHHHHHHHHHHHcccccccEcccccccHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHccccccEEEEcccccccccccccccEEEcccEEcccccEEEEcccccccccccccccHHHcccEcccccEEEccc
mhgggpqvvagkpldhaylNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVcshhahggkgaVDLGIAVQRACEnvtqplkflypsdvsiKEKIDTIARSYGASGVEYSEEAEKQIKMYTrqgfsglpfcmaktqhsfshnaptgfilpirdvrasigagfiyplvgtistmlglptrpcfyeidgdtatgrvlgls
MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTqplkflypsdvsiKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS
MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIaamaagafdaVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS
***********KPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATG******
*HGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS
MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS
**********GKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVL***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNAPTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query225 2.2.26 [Sep-21-2011]
P28723637 Formate--tetrahydrofolate N/A no 1.0 0.353 0.804 1e-109
Q9SPK5634 Formate--tetrahydrofolate yes no 1.0 0.354 0.782 1e-107
Q6UB35978 Monofunctional C1-tetrahy yes no 0.991 0.228 0.569 2e-65
Q0VCR7975 Monofunctional C1-tetrahy yes no 0.991 0.228 0.569 2e-65
P27653935 C-1-tetrahydrofolate synt yes no 0.991 0.238 0.534 5e-64
Q3V3R1977 Monofunctional C1-tetrahy yes no 0.991 0.228 0.560 6e-64
P11586935 C-1-tetrahydrofolate synt no no 0.991 0.238 0.547 6e-62
Q922D8935 C-1-tetrahydrofolate synt no no 0.991 0.238 0.556 9e-62
Q5R8P0935 C-1-tetrahydrofolate synt no no 0.991 0.238 0.547 2e-61
Q27772933 C-1-tetrahydrofolate synt N/A no 0.991 0.239 0.495 3e-57
>sp|P28723|FTHS_SPIOL Formate--tetrahydrofolate ligase OS=Spinacia oleracea PE=1 SV=3 Back     alignment and function desciption
 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/230 (80%), Positives = 210/230 (91%), Gaps = 5/230 (2%)

Query: 1   MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEA 60
           MHGGGPQVVAGKPLD AYL ENV LVEAGCVNLARHI NTKAYG NVVVA+NMF++D+EA
Sbjct: 408 MHGGGPQVVAGKPLDRAYLTENVGLVEAGCVNLARHIINTKAYGSNVVVAINMFSSDTEA 467

Query: 61  ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120
           ELNAV+ AAM AGAFDAV+C+HHAHGGKGAVDLGIAVQ+ACENVTQPL+FLYP D+SIKE
Sbjct: 468 ELNAVKKAAMDAGAFDAVICTHHAHGGKGAVDLGIAVQKACENVTQPLRFLYPLDISIKE 527

Query: 121 KIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHN-----APTGFI 175
           KI+ IA+SYGA+GVEYSE+AEK+I+MY++QGFS LP CMAKTQ+SFSHN     AP+GFI
Sbjct: 528 KIEAIAKSYGAAGVEYSEQAEKKIEMYSKQGFSNLPICMAKTQYSFSHNAAEKGAPSGFI 587

Query: 176 LPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS 225
           LPIRDVR SIGAGFIYPLVGT+STM GLPTRPCF++ID DT TG+V+GLS
Sbjct: 588 LPIRDVRGSIGAGFIYPLVGTMSTMPGLPTRPCFFDIDLDTTTGKVIGLS 637

Spinacia oleracea (taxid: 3562)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 3
>sp|Q9SPK5|FTHS_ARATH Formate--tetrahydrofolate ligase OS=Arabidopsis thaliana GN=THFS PE=1 SV=1 Back     alignment and function description
>sp|Q6UB35|C1TM_HUMAN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1 Back     alignment and function description
>sp|Q0VCR7|C1TM_BOVIN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Bos taurus GN=MTHFD1L PE=2 SV=2 Back     alignment and function description
>sp|P27653|C1TC_RAT C-1-tetrahydrofolate synthase, cytoplasmic OS=Rattus norvegicus GN=Mthfd1 PE=1 SV=3 Back     alignment and function description
>sp|Q3V3R1|C1TM_MOUSE Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Mus musculus GN=Mthfd1l PE=1 SV=2 Back     alignment and function description
>sp|P11586|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3 Back     alignment and function description
>sp|Q922D8|C1TC_MOUSE C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus musculus GN=Mthfd1 PE=1 SV=4 Back     alignment and function description
>sp|Q5R8P0|C1TC_PONAB C-1-tetrahydrofolate synthase, cytoplasmic OS=Pongo abelii GN=MTHFD1 PE=2 SV=3 Back     alignment and function description
>sp|Q27772|C1TC_SPOFR C-1-tetrahydrofolate synthase, cytoplasmic OS=Spodoptera frugiperda PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
224052994 636 10-formyltetrahydrofolate synthetase [Po 1.0 0.353 0.839 1e-110
225435632 637 PREDICTED: formate--tetrahydrofolate lig 1.0 0.353 0.826 1e-109
2507455 637 RecName: Full=Formate--tetrahydrofolate 1.0 0.353 0.804 1e-108
297847394 634 10-formyltetrahydrofolate synthetase [Ar 1.0 0.354 0.795 1e-107
242044850 751 hypothetical protein SORBIDRAFT_02g02614 1.0 0.299 0.8 1e-107
357489013 730 Formate-tetrahydrofolate ligase [Medicag 1.0 0.308 0.795 1e-106
357445035 743 Formate-tetrahydrofolate ligase [Medicag 1.0 0.302 0.795 1e-106
224073194 636 10-formyltetrahydrofolate synthetase [Po 1.0 0.353 0.852 1e-106
255581686 415 formate-tetrahydrofolate ligase, putativ 1.0 0.542 0.852 1e-106
18403095 634 Formate--tetrahydrofolate ligase [Arabid 1.0 0.354 0.782 1e-105
>gi|224052994|ref|XP_002297654.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi|222844912|gb|EEE82459.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/230 (83%), Positives = 212/230 (92%), Gaps = 5/230 (2%)

Query: 1   MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEA 60
           MHGGGP+VVAGKPLD AY  ENV+LVEAGCVNLARHI+NTKAYGVNVVVAVNMFATDSEA
Sbjct: 407 MHGGGPEVVAGKPLDRAYTTENVSLVEAGCVNLARHISNTKAYGVNVVVAVNMFATDSEA 466

Query: 61  ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120
           ELNAVR AA+ AGA+DAVVC+HHAHGGKGAV+LGIAVQ+AC NVTQPLKFLY  D+SIKE
Sbjct: 467 ELNAVRNAALTAGAYDAVVCTHHAHGGKGAVELGIAVQKACGNVTQPLKFLYSLDISIKE 526

Query: 121 KIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHN-----APTGFI 175
           KI+ IARSYGASGVEYSE+AEKQI+MY+RQGFSGLP CMAKTQ+SFSH      APTGF+
Sbjct: 527 KIEAIARSYGASGVEYSEQAEKQIEMYSRQGFSGLPICMAKTQYSFSHQASEKGAPTGFV 586

Query: 176 LPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS 225
           LPIRDVRASIGAGFIYPLVGT+STM GLPTRPCFY+ID DTATG+V+GLS
Sbjct: 587 LPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGLS 636

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435632|ref|XP_002285654.1| PREDICTED: formate--tetrahydrofolate ligase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|2507455|sp|P28723.3|FTHS_SPIOL RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi|170145|gb|AAA34046.1| 10-formyltetrahydrofolate synthetase [Spinacia oleracea] Back     alignment and taxonomy information
>gi|297847394|ref|XP_002891578.1| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata] gi|297337420|gb|EFH67837.1| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|242044850|ref|XP_002460296.1| hypothetical protein SORBIDRAFT_02g026140 [Sorghum bicolor] gi|241923673|gb|EER96817.1| hypothetical protein SORBIDRAFT_02g026140 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357489013|ref|XP_003614794.1| Formate-tetrahydrofolate ligase [Medicago truncatula] gi|355516129|gb|AES97752.1| Formate-tetrahydrofolate ligase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357445035|ref|XP_003592795.1| Formate-tetrahydrofolate ligase [Medicago truncatula] gi|355481843|gb|AES63046.1| Formate-tetrahydrofolate ligase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224073194|ref|XP_002304017.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi|222841449|gb|EEE78996.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255581686|ref|XP_002531646.1| formate-tetrahydrofolate ligase, putative [Ricinus communis] gi|223528731|gb|EEF30742.1| formate-tetrahydrofolate ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18403095|ref|NP_564571.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana] gi|68052257|sp|Q9SPK5.1|FTHS_ARATH RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi|5921663|gb|AAD56290.1|AF162279_1 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|9454559|gb|AAF87882.1|AC012561_15 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|12322329|gb|AAG51185.1|AC079279_6 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|15451114|gb|AAK96828.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|20148441|gb|AAM10111.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|332194434|gb|AEE32555.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
TAIR|locus:2008101634 THFS "10-formyltetrahydrofolat 1.0 0.354 0.752 1.5e-92
DICTYBASE|DDB_G0290397638 fthS "formyltetrahydrofolate s 1.0 0.352 0.599 1.7e-68
ZFIN|ZDB-GENE-020905-4934 mthfd1b "methylenetetrahydrofo 0.991 0.238 0.539 1.1e-60
UNIPROTKB|F1NMC3935 MTHFD1 "Uncharacterized protei 0.991 0.238 0.547 1.2e-58
UNIPROTKB|F1SA74930 MTHFD1 "Uncharacterized protei 0.991 0.239 0.543 1.1e-57
UNIPROTKB|G3V2B8935 MTHFD1 "C-1-tetrahydrofolate s 0.991 0.238 0.526 1.9e-56
UNIPROTKB|P11586935 MTHFD1 "C-1-tetrahydrofolate s 0.991 0.238 0.526 1.9e-56
WB|WBGene00019492640 K07E3.4 [Caenorhabditis elegan 0.995 0.35 0.532 2.5e-56
MGI|MGI:1342005935 Mthfd1 "methylenetetrahydrofol 0.991 0.238 0.534 3.2e-56
UNIPROTKB|E2R2W7935 MTHFD1 "Uncharacterized protei 0.991 0.238 0.530 4.1e-56
TAIR|locus:2008101 THFS "10-formyltetrahydrofolate synthetase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 173/230 (75%), Positives = 201/230 (87%)

Query:     1 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEA 60
             MHGGGP VVAG+PLD AY++ENV+LVEAGCVNLA+HI+NTKAYGVNV+VAVNMFATD+EA
Sbjct:   405 MHGGGPDVVAGRPLDRAYVSENVSLVEAGCVNLAKHISNTKAYGVNVIVAVNMFATDTEA 464

Query:    61 ELNAVRIXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120
             ELNAVR           VVCSHHAH GKGAVDLGIAV++AC+N+TQPL+FLYP D+ IK+
Sbjct:   465 ELNAVRKFSMDAGAFDAVVCSHHAHSGKGAVDLGIAVEKACQNITQPLRFLYPLDIGIKD 524

Query:   121 KIDTIARSYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNA-----PTGFI 175
             KI+ IA+SYGASGVEYS++AEKQI+MYT+QGFS LP CM+KTQ+SFSH+A     P+GF+
Sbjct:   525 KIEAIAKSYGASGVEYSDQAEKQIEMYTQQGFSNLPICMSKTQYSFSHDASKKGAPSGFV 584

Query:   176 LPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS 225
             LPIRDVR SIGAGFIYPLVGT+STM GLPTRPCFYEID DT TG+V GLS
Sbjct:   585 LPIRDVRGSIGAGFIYPLVGTMSTMPGLPTRPCFYEIDIDTETGKVRGLS 634
GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
DICTYBASE|DDB_G0290397 fthS "formyltetrahydrofolate synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020905-4 mthfd1b "methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMC3 MTHFD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SA74 MTHFD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2B8 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P11586 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00019492 K07E3.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:1342005 Mthfd1 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2W7 MTHFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SPK5FTHS_ARATH6, ., 3, ., 4, ., 30.78261.00.3548yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.4LOW CONFIDENCE prediction!
3rd Layer6.3.4.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
FTHFS1
10-formyltetrahydrofolate synthetase (EC-6.3.4.3) (636 aa)
(Populus trichocarpa)
Predicted Functional Partners:
GART
hypothetical protein (215 aa)
•    •• 0.948
gw1.II.1126.1
tetrahydrofolate dehydrogenase/cyclohydrolase (EC-6.3.4.3) (290 aa)
•• • •• 0.947
SHMT6
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
    ••• 0.928
SHMT1
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
    ••• 0.928
gdcT1
precursor of carboxylase t-protein 1, glycine decarboxylase complex (EC-2.1.2.10); The glycine [...] (409 aa)
•  • •• 0.927
SHMT3
precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa)
    ••• 0.927
SHMT2
precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa)
    ••• 0.926
SHMT7
precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa)
    ••• 0.926
gdcT2
RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (409 aa)
•  • •• 0.926
SHMT8
serine hydroxymethyltransferase 8 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (530 aa)
    ••• 0.926

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
PLN02759637 PLN02759, PLN02759, Formate--tetrahydrofolate liga 1e-145
pfam01268557 pfam01268, FTHFS, Formate--tetrahydrofolate ligase 1e-101
cd00477524 cd00477, FTHFS, Formyltetrahydrofolate synthetase 1e-98
PTZ00386625 PTZ00386, PTZ00386, formyl tetrahydrofolate synthe 4e-96
PRK13505557 PRK13505, PRK13505, formate--tetrahydrofolate liga 1e-80
COG2759554 COG2759, MIS1, Formyltetrahydrofolate synthetase [ 4e-79
PRK13507587 PRK13507, PRK13507, formate--tetrahydrofolate liga 5e-74
PRK13506578 PRK13506, PRK13506, formate--tetrahydrofolate liga 9e-69
>gnl|CDD|178359 PLN02759, PLN02759, Formate--tetrahydrofolate ligase Back     alignment and domain information 
 Score =  418 bits (1076), Expect = e-145
 Identities = 184/231 (79%), Positives = 204/231 (88%), Gaps = 6/231 (2%)

Query: 1   MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEA 60
           MHGGGP VVAGKPLDHAY  ENV LVEAGCVNLARHI NTK+YGVNVVVA+NMFATD+EA
Sbjct: 407 MHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVAINMFATDTEA 466

Query: 61  ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120
           EL AVR AA+AAGAFDAV+C+HHAHGGKGAVDLG AVQ+ACE  +QP KFLYP D+SIKE
Sbjct: 467 ELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYPLDISIKE 526

Query: 121 KIDTIAR-SYGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHN-----APTGF 174
           KI+ IA+ SYGA GVEYSE+AE QI+MYTRQGFS LP CMAKTQ+SFSH+     AP+GF
Sbjct: 527 KIEAIAKESYGADGVEYSEQAEAQIEMYTRQGFSNLPICMAKTQYSFSHDASLKGAPSGF 586

Query: 175 ILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS 225
            LPIRDVRAS+GAGFIYPLVGT+STM GLPTRPCFY+ID DT TG+VLGLS
Sbjct: 587 TLPIRDVRASVGAGFIYPLVGTMSTMPGLPTRPCFYDIDIDTETGKVLGLS 637

Length = 637
>gnl|CDD|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase Back     alignment and domain information
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate Back     alignment and domain information
>gnl|CDD|240394 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information
>gnl|CDD|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information
>gnl|CDD|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 225
PRK13507587 formate--tetrahydrofolate ligase; Provisional 100.0
PLN02759637 Formate--tetrahydrofolate ligase 100.0
PRK13506578 formate--tetrahydrofolate ligase; Provisional 100.0
PF01268557 FTHFS: Formate--tetrahydrofolate ligase; InterPro: 100.0
PTZ00386625 formyl tetrahydrofolate synthetase; Provisional 100.0
COG2759554 MIS1 Formyltetrahydrofolate synthetase [Nucleotide 100.0
PRK13505557 formate--tetrahydrofolate ligase; Provisional 100.0
cd00477524 FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca 100.0
KOG4230935 consensus C1-tetrahydrofolate synthase [Coenzyme t 100.0
PRK15452 443 putative protease; Provisional 93.8
COG1149284 MinD superfamily P-loop ATPase containing an inser 92.77
PLN02591250 tryptophan synthase 91.48
COG0370 653 FeoB Fe2+ transport system protein B [Inorganic io 90.9
TIGR00436270 era GTP-binding protein Era. Era is an essential G 90.79
PRK00089292 era GTPase Era; Reviewed 90.02
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 89.56
cd04145164 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf 89.22
PF00009188 GTP_EFTU: Elongation factor Tu GTP binding domain; 88.69
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 88.43
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 88.16
PRK15494339 era GTPase Era; Provisional 87.92
cd04138162 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, 87.52
TIGR03470318 HpnH hopanoid biosynthesis associated radical SAM 86.88
COG0826 347 Collagenase and related proteases [Posttranslation 86.88
cd04112191 Rab26 Rab26 subfamily. First identified in rat pan 86.8
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 86.51
PRK12298390 obgE GTPase CgtA; Reviewed 86.46
cd04127180 Rab27A Rab27a subfamily. The Rab27a subfamily cons 86.19
PF02421156 FeoB_N: Ferrous iron transport protein B; InterPro 85.98
COG0532 509 InfB Translation initiation factor 2 (IF-2; GTPase 85.89
PRK13210284 putative L-xylulose 5-phosphate 3-epimerase; Revie 85.87
PRK09554 772 feoB ferrous iron transport protein B; Reviewed 85.61
PF01261213 AP_endonuc_2: Xylose isomerase-like TIM barrel; In 85.5
cd04106162 Rab23_lke Rab23-like subfamily. Rab23 is a member 85.02
TIGR00542279 hxl6Piso_put hexulose-6-phosphate isomerase, putat 83.09
TIGR02493235 PFLA pyruvate formate-lyase 1-activating enzyme. A 82.95
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 82.54
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 82.22
cd00019279 AP2Ec AP endonuclease family 2; These endonuclease 81.85
TIGR00231161 small_GTP small GTP-binding protein domain. This m 81.73
PF07005223 DUF1537: Protein of unknown function, DUF1537; Int 81.16
PRK09856275 fructoselysine 3-epimerase; Provisional 80.92
cd04124161 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily 80.4
cd00154159 Rab Rab family. Rab GTPases form the largest famil 80.29
TIGR00036266 dapB dihydrodipicolinate reductase. 80.03
>PRK13507 formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.5e-97  Score=708.47  Aligned_cols=223  Identities=49%  Similarity=0.801  Sum_probs=219.6

Q ss_pred             CCCCCCCccCCCCCccccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073            1 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVC   80 (225)
Q Consensus         1 ~HGGv~~~~lg~pl~~~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs   80 (225)
                      ||||+++..+|+|||++|++||++||++||+||+|||+|+++||+|||||||+|++||++||++|+++|+++|++ +++|
T Consensus       358 ~hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~-~~v~  436 (587)
T PRK13507        358 MHGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGAR-VAVS  436 (587)
T ss_pred             HcCCCCccccCCccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCC-EEEe
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999997 9999


Q ss_pred             cccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-HhccCCCCCCHHHHHHHHHHHHCC-CCCCCee
Q 042073           81 SHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIKMYTRQG-FSGLPFC  158 (225)
Q Consensus        81 ~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-IYGA~~V~~s~~A~~~l~~~e~~G-~~~lPVC  158 (225)
                      +||++||+|+++||++|+++|++ +++|+|||++++||+|||++||+ ||||++|+||++|++||++||++| |++||||
T Consensus       437 ~~wa~GGeGa~eLA~~Vv~a~e~-~s~fk~LYd~~~sI~EKIetIAkeIYGAdgVe~S~~A~kqLk~le~~gGfg~LPVC  515 (587)
T PRK13507        437 RHWEKGGEGALELADAVIDACNE-PNDFKFLYPLEMPLRERIETIAREVYGADGVSYTPEAEAKLKRLESDPETADFGTC  515 (587)
T ss_pred             chhhccchhHHHHHHHHHHHhhC-cCCCcccCCCCCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHhcCCCCCCCEE
Confidence            99999999999999999999985 67899999999999999999999 999999999999999999999996 9999999


Q ss_pred             EeecCCCcCCC-----CCCCceEEeeEEEeecCCceeeeecccccccCCCCCCCceeeeeeeCCCCeeeccC
Q 042073          159 MAKTQHSFSHN-----APTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS  225 (225)
Q Consensus       159 mAKTqyS~Sdd-----~P~~f~~~vrdv~~~~GAgFiv~~~G~i~tMPGLpk~Paa~~idvd~~~G~I~GL~  225 (225)
                      |||||||||||     +|+||+|||||||+|+||||||++||+|||||||||+|+|++||||+++|+|+|||
T Consensus       516 mAKTqyS~S~d~~~~g~P~gf~~~ir~v~~~~GAGFiv~l~G~i~tMPGLp~~Paa~~idid~~~G~i~GL~  587 (587)
T PRK13507        516 MVKTHLSLSHDPALKGVPKGWTLPIRDILTYGGAGFVVPVAGDISLMPGTGSDPAFRRIDVDTQTGKVKGLF  587 (587)
T ss_pred             EEecCcCcCCCccccCCCCCcEEEeeEEEEcCCCCEEEEecCCcccCCCCCCCCccccccccCCCCEEeccC
Confidence            99999999999     99999999999999999999999999999999999999999999999999999998

>PLN02759 Formate--tetrahydrofolate ligase Back     alignment and domain information
>PRK13506 formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6 Back     alignment and domain information
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional Back     alignment and domain information
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13505 formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate Back     alignment and domain information
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK15452 putative protease; Provisional Back     alignment and domain information
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00436 era GTP-binding protein Era Back     alignment and domain information
>PRK00089 era GTPase Era; Reviewed Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily Back     alignment and domain information
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PRK15494 era GTPase Era; Provisional Back     alignment and domain information
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily Back     alignment and domain information
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH Back     alignment and domain information
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04112 Rab26 Rab26 subfamily Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK12298 obgE GTPase CgtA; Reviewed Back     alignment and domain information
>cd04127 Rab27A Rab27a subfamily Back     alignment and domain information
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions Back     alignment and domain information
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed Back     alignment and domain information
>PRK09554 feoB ferrous iron transport protein B; Reviewed Back     alignment and domain information
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 Back     alignment and domain information
>cd04106 Rab23_lke Rab23-like subfamily Back     alignment and domain information
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative Back     alignment and domain information
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair Back     alignment and domain information
>TIGR00231 small_GTP small GTP-binding protein domain Back     alignment and domain information
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis Back     alignment and domain information
>PRK09856 fructoselysine 3-epimerase; Provisional Back     alignment and domain information
>cd04124 RabL2 RabL2 subfamily Back     alignment and domain information
>cd00154 Rab Rab family Back     alignment and domain information
>TIGR00036 dapB dihydrodipicolinate reductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
1eg7_A557 The Crystal Structure Of Formyltetrahydrofolate Syn 6e-35
1fpm_A557 Monovalent Cation Binding Sites In N10-formyltetrah 6e-35
3do6_A543 Crystal Structure Of Putative Formyltetrahydrofolat 8e-25
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 118/230 (51%), Gaps = 18/230 (7%)
Query: 1   MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEA 60
           MHGG P+             EN+  +  G  NL +HI N   +GV  VVA+N F TD+EA
Sbjct: 339 MHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEA 390
Query: 61  ELNAVRIXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120
           ELN   +           V    A GG+G ++L   V +  E+       LY  D+SIK+
Sbjct: 391 ELN---LLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKD 447
Query: 121 KIDTIARS-YGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHNA-----PTGF 174
           KI  IA   YGA GV Y+ EA+K I+ Y   G+  LP  MAKTQ+SFS +      P  F
Sbjct: 448 KIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNF 507
Query: 175 ILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGL 224
            + +R+VR S G   I P+ G I TM GLP RP    ID D A G + GL
Sbjct: 508 TITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGL 556
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In N10-formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557 Back     alignment and structure
>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A Resolution Length = 543 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
3do6_A543 Formate--tetrahydrofolate ligase; TM1766, putative 1e-89
3pzx_A557 Formate--tetrahydrofolate ligase; HET: TOE; 2.20A 2e-88
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} Length = 543 Back     alignment and structure
 Score =  273 bits (700), Expect = 1e-89
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 18/231 (7%)

Query: 1   MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEA 60
            HGG                EN+  ++ G  NL  H+ N + + + VVVA+N F+TD+E 
Sbjct: 325 YHGGANL--------KNIHEENLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEK 376

Query: 61  ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120
           E+  V       G     V      G +G V+L  AV  A ++      +LY  +  +++
Sbjct: 377 EIAYVVKECEKLGV-RVAVSEVFKKGSEGGVELAKAVAEAAKD--VEPAYLYEMNDPVEK 433

Query: 121 KIDTIARS-YGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHN-----APTGF 174
           KI+ +A+  Y A  VE+S+ A+  +K   + GF  LP  +AKT  S SH+     AP G+
Sbjct: 434 KIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLRGAPEGY 493

Query: 175 ILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS 225
              + D+  S GAGF+  L G I+ M GLP +P    +D D  +G ++G+S
Sbjct: 494 TFVVSDLFVSAGAGFVVALSGDINLMPGLPKKPNALNMDVD-DSGNIVGVS 543

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
3do6_A543 Formate--tetrahydrofolate ligase; TM1766, putative 100.0
3pzx_A557 Formate--tetrahydrofolate ligase; HET: TOE; 2.20A 100.0
2efe_B181 Small GTP-binding protein-like; GEF, GTPase, VPS9, 92.39
3vni_A294 Xylose isomerase domain protein TIM barrel; D-psic 92.16
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 91.64
3a1s_A258 Iron(II) transport protein B; FEOB, iron transport 91.4
3t1o_A198 Gliding protein MGLA; G domain containing protein, 91.15
3qxb_A316 Putative xylose isomerase; structural genomics, jo 90.72
3iev_A308 GTP-binding protein ERA; ERA, GTPase, KH domain, a 90.55
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 90.19
2hk0_A309 D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00 89.86
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 89.42
2yc2_C208 IFT27, small RAB-related GTPase; transport protein 89.4
2wjg_A188 FEOB, ferrous iron transport protein B homolog; me 89.27
2fu5_C183 RAS-related protein RAB-8A; MSS4:RAB8 protein comp 89.04
1ega_A301 Protein (GTP-binding protein ERA); GTPase, RNA-bin 88.94
3kws_A287 Putative sugar isomerase; structural genomics, joi 88.7
1z0f_A179 RAB14, member RAS oncogene family; RAB GTPase, ves 88.59
2qw5_A335 Xylose isomerase-like TIM barrel; putative sugar p 88.21
3tkl_A196 RAS-related protein RAB-1A; vesicle trafficking, p 88.11
2nzj_A175 GTP-binding protein REM 1; GDP/GTP binding, GTP hy 88.05
1g16_A170 RAS-related protein SEC4; G protein RAB, signaling 87.75
3clv_A208 RAB5 protein, putative; malaria, GTPase, structura 87.4
3tva_A290 Xylose isomerase domain protein TIM barrel; struct 87.38
3c5h_A255 Glucocorticoid receptor DNA-binding factor 1; RAS, 87.35
1ujp_A271 Tryptophan synthase alpha chain; riken structural 87.34
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 87.27
2gf9_A189 RAS-related protein RAB-3D; G-protein, structural 87.24
3kkq_A183 RAS-related protein M-RAS; GTP-binding, GTPase, si 87.22
3c5c_A187 RAS-like protein 12; GDP, GTPase, structural genom 87.08
2g6b_A180 RAS-related protein RAB-26; G-protein, GTP analogu 86.89
3bc1_A195 RAS-related protein RAB-27A; RAB27, GTPase, RAB, s 86.34
2a9k_A187 RAS-related protein RAL-A; bacterial ADP-ribosyltr 86.3
3con_A190 GTPase NRAS; structural genomics consortium, SGC, 86.23
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 86.21
3q72_A166 GTP-binding protein RAD; G-domain, CAV2 beta, sign 86.14
3bdk_A386 D-mannonate dehydratase; xylose isomerase-like TIM 86.11
1i60_A278 IOLI protein; beta barrel, structural genomics, PS 86.03
1z06_A189 RAS-related protein RAB-33B; RAB GTPase, RAB33B GT 85.85
2bov_A206 RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, 85.62
3t5g_A181 GTP-binding protein RHEB; immunoglobulin-like beta 85.61
2a5j_A191 RAS-related protein RAB-2B; GTPase, signal transdu 85.32
1r2q_A170 RAS-related protein RAB-5A; GTPase, GNP, atomic re 85.08
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 85.03
2bcg_Y206 Protein YP2, GTP-binding protein YPT1; RABGTPase, 84.96
3ayv_A254 Putative uncharacterized protein TTHB071; structur 84.95
2atx_A194 Small GTP binding protein TC10; GTPase, P-loop, al 84.94
2f7s_A217 C25KG, RAS-related protein RAB-27B; G-protein, str 84.81
1qtw_A285 Endonuclease IV; DNA repair enzyme, TIM barrel, tr 84.64
2fg5_A192 RAB-22B, RAS-related protein RAB-31; G-protein, GT 84.63
2e87_A357 Hypothetical protein PH1320; GTP-binding, GTPase, 84.14
3sjy_A403 Translation initiation factor 2 subunit gamma; zin 84.08
1c1y_A167 RAS-related protein RAP-1A; GTP-binding proteins, 83.93
3cpj_B223 GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl 83.7
1z08_A170 RAS-related protein RAB-21; RAB GTPase, vesicular 83.43
2fn4_A181 P23, RAS-related protein R-RAS; GDP/GTP binding, G 83.31
3c8f_A245 Pyruvate formate-lyase 1-activating enzyme; adoMet 83.29
2y8e_A179 RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti 83.27
3can_A182 Pyruvate-formate lyase-activating enzyme; structur 83.11
3cph_A213 RAS-related protein SEC4; RAB GTPase, prenylation, 83.01
4dhe_A223 Probable GTP-binding protein ENGB; melioidosis, RA 82.91
1z0j_A170 RAB-22, RAS-related protein RAB-22A; RAB GTPase, R 82.55
3lmz_A257 Putative sugar isomerase; structural genomics, joi 82.46
2whl_A294 Beta-mannanase, baman5; glycoside hydrolase, hydro 82.37
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 82.26
1tz9_A367 Mannonate dehydratase; alpha-beta protein, structu 82.24
1zbd_A203 Rabphilin-3A; G protein, effector, RABCDR, synapti 82.2
3cqj_A295 L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre 82.14
3q85_A169 GTP-binding protein REM 2; G-domain, CAV2 beta, si 81.98
3i8s_A274 Ferrous iron transport protein B; GTPase, GPCR, ir 81.97
4dsu_A189 GTPase KRAS, isoform 2B; small G-protein, signalin 81.92
2x7v_A287 Probable endonuclease 4; DNA repair protein, metal 81.8
3b1v_A272 Ferrous iron uptake transporter protein B; G prote 81.71
2yv5_A302 YJEQ protein; hydrolase, GTPase, permutation, stru 81.16
1x3s_A195 RAS-related protein RAB-18; GTPase, GNP, structura 81.0
2oil_A193 CATX-8, RAS-related protein RAB-25; G-protein, GDP 80.68
2elf_A370 Protein translation elongation factor 1A; tRNA, py 80.56
2il1_A192 RAB12; G-protein, GDP, GTPase, predicted, structur 80.54
1wb1_A 482 Translation elongation factor SELB; selenocysteine 80.5
3dz8_A191 RAS-related protein RAB-3B; GDP, GTPase, structura 80.15
2qul_A290 D-tagatose 3-epimerase; beta/alpha barrel, isomera 80.03
2p5s_A199 RAS and EF-hand domain containing; G-protein, RAB, 80.03
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0 Back     alignment and structure
Probab=100.00  E-value=7.6e-96  Score=693.39  Aligned_cols=213  Identities=35%  Similarity=0.592  Sum_probs=208.3

Q ss_pred             CCCCCCCccCCCCCccccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073            1 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVC   80 (225)
Q Consensus         1 ~HGGv~~~~lg~pl~~~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs   80 (225)
                      ||||+++        ++|.+||++||++||+||+|||+|+++||+|||||||||++||++||++|+++|+++|++ +++|
T Consensus       325 ~hGG~~~--------~~l~~enl~al~~G~~NL~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~s  395 (543)
T 3do6_A          325 YHGGANL--------KNIHEENLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVR-VAVS  395 (543)
T ss_dssp             HHTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCE-EEEE
T ss_pred             hcCCCCh--------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEe
Confidence            7999997        566669999999999999999999999999999999999999999999999999999996 9999


Q ss_pred             cccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-HhccCCCCCCHHHHHHHHHHHHCCCCCCCeeE
Q 042073           81 SHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIKMYTRQGFSGLPFCM  159 (225)
Q Consensus        81 ~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-IYGA~~V~~s~~A~~~l~~~e~~G~~~lPVCm  159 (225)
                      +||++||+|+++||++|+++|+  +++|+|||++++||+|||++||+ ||||++|+||++|++||++|+++||++|||||
T Consensus       396 ~~wa~GG~G~~~LA~~Vv~~~e--~~~f~~lY~~~~~i~eKI~~Ia~~iYGA~~V~~s~~A~~~l~~~~~~G~~~lPvCm  473 (543)
T 3do6_A          396 EVFKKGSEGGVELAKAVAEAAK--DVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIV  473 (543)
T ss_dssp             CHHHHGGGGSHHHHHHHHHHCC--CCCCCCSSCTTSCHHHHHHHHHHHTSCCSEEEECHHHHHHHHHHHHTTCTTSCEEE
T ss_pred             chhhccchhHHHHHHHHHHHhc--CCCcccccCCCCCHHHHHHHHHHHHcCCCeEEECHHHHHHHHHHHhcCCCCCCEEE
Confidence            9999999999999999999997  57899999999999999999999 99999999999999999999999999999999


Q ss_pred             eecCCCcCCC-----CCCCceEEeeEEEeecCCceeeeecccccccCCCCCCCceeeeeeeCCCCeeeccC
Q 042073          160 AKTQHSFSHN-----APTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLGLS  225 (225)
Q Consensus       160 AKTqyS~Sdd-----~P~~f~~~vrdv~~~~GAgFiv~~~G~i~tMPGLpk~Paa~~idvd~~~G~I~GL~  225 (225)
                      ||||||||||     +|+||+|||||||+|+||||||++||+|||||||||+|+|++|||| ++|+|+|||
T Consensus       474 AKTqySlS~dp~~~G~P~gf~~~irdv~~saGAGFiv~l~G~i~tMPGLp~~Paa~~idvd-~~G~i~GLf  543 (543)
T 3do6_A          474 AKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALSGDINLMPGLPKKPNALNMDVD-DSGNIVGVS  543 (543)
T ss_dssp             ECCSSSSSSCTTCCSCCCSCEEEECEEEEETTTTEEEEECSCCCSSCCCCSSCGGGGCEEC-TTSCEESCC
T ss_pred             EccCcCcccCccccCCCCCceEEeeEEEEcCCCcEEEEEeCcceeCCCCCCCccceeCcCC-CCCCEeeCC
Confidence            9999999999     9999999999999999999999999999999999999999999999 999999998
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Back     alignment and structure
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Back     alignment and structure
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Back     alignment and structure
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum} Back     alignment and structure
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Back     alignment and structure
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Back     alignment and structure
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Back     alignment and structure
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Back     alignment and structure
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Back     alignment and structure
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Back     alignment and structure
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Back     alignment and structure
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Back     alignment and structure
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} Back     alignment and structure
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Back     alignment and structure
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Back     alignment and structure
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Back     alignment and structure
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Back     alignment and structure
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Back     alignment and structure
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Back     alignment and structure
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Back     alignment and structure
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A Back     alignment and structure
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A Back     alignment and structure
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Back     alignment and structure
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Back     alignment and structure
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* Back     alignment and structure
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Back     alignment and structure
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Back     alignment and structure
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A Back     alignment and structure
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Back     alignment and structure
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* Back     alignment and structure
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Back     alignment and structure
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Back     alignment and structure
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Back     alignment and structure
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Back     alignment and structure
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Back     alignment and structure
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Back     alignment and structure
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Back     alignment and structure
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Back     alignment and structure
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Back     alignment and structure
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} Back     alignment and structure
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6 Back     alignment and structure
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Back     alignment and structure
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A Back     alignment and structure
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* Back     alignment and structure
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Back     alignment and structure
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Back     alignment and structure
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* Back     alignment and structure
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Back     alignment and structure
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Back     alignment and structure
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Back     alignment and structure
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Back     alignment and structure
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Back     alignment and structure
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Back     alignment and structure
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* Back     alignment and structure
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 225
d1eg7a_549 c.37.1.10 (A:) Formyltetrahydrofolate synthetase { 2e-70
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Length = 549 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

 Score =  222 bits (567), Expect = 2e-70
 Identities = 93/229 (40%), Positives = 118/229 (51%), Gaps = 18/229 (7%)

Query: 1   MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEA 60
           MHGG P              EN+  +  G  NL +HI N   +GV  VVA+N F TD+EA
Sbjct: 333 MHGGVP--------KSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEA 384

Query: 61  ELNAVRIAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKE 120
           ELN +      A    A V    A GG+G ++L   V +  E+       LY  D+SIK+
Sbjct: 385 ELNLLYELCAKA---GAEVALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKD 441

Query: 121 KIDTIARS-YGASGVEYSEEAEKQIKMYTRQGFSGLPFCMAKTQHSFSHN-----APTGF 174
           KI  IA   YGA GV Y+ EA+K I+ Y   G+  LP  MAKTQ+SFS +      P  F
Sbjct: 442 KIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNF 501

Query: 175 ILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLG 223
            + +R+VR S G   I P+ G I TM GLP RP    ID D A G + G
Sbjct: 502 TITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITG 549

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
d1eg7a_549 Formyltetrahydrofolate synthetase {Moorella thermo 100.0
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 93.89
d1wb1a4179 Elongation factor SelB, N-terminal domain {Methano 92.78
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 90.57
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 90.11
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 88.62
d2c78a3204 Elongation factor Tu (EF-Tu), N-terminal (G) domai 84.71
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 82.15
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 81.93
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 81.71
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 81.61
d1kk1a3195 Initiation factor eIF2 gamma subunit, N-terminal ( 81.34
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=100.00  E-value=8.2e-95  Score=690.04  Aligned_cols=211  Identities=45%  Similarity=0.700  Sum_probs=204.4

Q ss_pred             CCCCCCCccCCCCCccccccccHHHHHHhHHHHHHHHHHHhhcCCeEEEEecCCCCCcHHHHHHHHHHHHHcCCCeEEEc
Q 042073            1 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFATDSEAELNAVRIAAMAAGAFDAVVC   80 (225)
Q Consensus         1 ~HGGv~~~~lg~pl~~~l~~eN~~al~~G~~NL~~HIeNi~~fGvpvVVAIN~F~~DT~~Ei~~i~~~c~~~g~~~~avs   80 (225)
                      ||||+++        ++|++||++||++||+||+|||+|+++||+|||||||||++||++||++|+++|++.|+.   +|
T Consensus       333 ~HGG~~~--------~~l~~eNl~Al~~G~~NL~rHIeNi~~fGlpvVVAIN~F~tDTd~Ei~~i~~~~~~~g~~---~a  401 (549)
T d1eg7a_         333 MHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAE---VA  401 (549)
T ss_dssp             HTTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHTTTSEEE---EE
T ss_pred             hcCCCCh--------HHcCcccHHHHHHHHHHHHHHHHhhhhcCCCeEEEeccCCccchhHHHHHHHHHhhcCcc---ee
Confidence            7999986        677779999999999999999999999999999999999999999999999999999885   45


Q ss_pred             cccccCchhhHHHHHHHHHHhhcCCCCcccccCCCCCHHHHHHHHHh-HhccCCCCCCHHHHHHHHHHHHCCCCCCCeeE
Q 042073           81 SHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPSDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIKMYTRQGFSGLPFCM  159 (225)
Q Consensus        81 ~~wa~GG~Ga~~LA~~Vv~~~e~~~~~f~~lY~~~~~i~eKI~~IA~-IYGA~~V~~s~~A~~~l~~~e~~G~~~lPVCm  159 (225)
                      .+|++||+|+++||++|++++++++++|+|||++++||+|||++||+ ||||++|+||++|++||++||++||++|||||
T Consensus       402 ~~wa~GG~Ga~dLA~~Vv~a~e~~~~~f~~LY~~~~~l~eKIe~IA~~IYGA~~V~~S~~A~kqL~~~e~~G~~~LPVCm  481 (549)
T d1eg7a_         402 LSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVM  481 (549)
T ss_dssp             CCTTTGGGGGHHHHHHHHHHHHHSCCCCCCSSCTTSCHHHHHHHHHHHTTCCSEEEECHHHHHHHHHHHHTTCTTSCEEE
T ss_pred             eecccCccchHHHHHHHHHHHhcccccccccCCccchHHHHHHHHHHHhcCCCceeeCHHHHHHHHHHHHCCCCCCCEEE
Confidence            67999999999999999999987788899999999999999999999 99999999999999999999999999999999


Q ss_pred             eecCCCcCCC-----CCCCceEEeeEEEeecCCceeeeecccccccCCCCCCCceeeeeeeCCCCeeec
Q 042073          160 AKTQHSFSHN-----APTGFILPIRDVRASIGAGFIYPLVGTISTMLGLPTRPCFYEIDGDTATGRVLG  223 (225)
Q Consensus       160 AKTqyS~Sdd-----~P~~f~~~vrdv~~~~GAgFiv~~~G~i~tMPGLpk~Paa~~idvd~~~G~I~G  223 (225)
                      ||||||||||     +|+||+|||||||+|+||||||++||+|||||||||+|||++|||| ++|+|+|
T Consensus       482 AKTqySfS~Dp~l~GaP~gf~l~VrevrlsaGAGFiV~i~G~ImTMPGLPk~PaA~~Idid-~~G~I~G  549 (549)
T d1eg7a_         482 AKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITG  549 (549)
T ss_dssp             ECCTTSSSSCTTCCSCCCSCEEEECCCEEETTTEEEEECSSTTCCSCCCCSSCGGGTCEEC-SSSEECC
T ss_pred             EeCCCCcCCCcccCCCCCCCeEEeeEEEEcCCceEEEEEecccccCCCCCCCccccccccC-CCCCeeC
Confidence            9999999999     9999999999999999999999999999999999999999999999 8999998
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure