Citrus Sinensis ID: 042092

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
ASLVLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSLC
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHcccccccccccccccEEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHccccccEEcccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHcccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHccccccEEEEccccccccccccccccccHHHcccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccccc
Coil and Loop (DISEMBL)
ASLVLSECARNCAFMNRLLHysclsnsfpSRKKLLIFALNESLFFILHSQnlnlcgndfnyskisygfSQFRSLTILNLrhynfrgsippsfcnltQLMHLdlssnilsghipsslsNLEQLREKKLTCSISSCIFELVNLTKVSLssnnlssnVELYMFTKlkslevldlsynklslc
Flexible Loop (DISEMBL)
ASLVLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKlkslevldlsynklslc
Low Complexity Region (SEG)
ASLVLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFElvnltkvslssnnlssnvelYMFTKLKSLEVLDLSYNKLSLC
Disordered region (IsUnstruct)
***VLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN*****
Disordered Region (DISOPRED)
ASLVLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSLC
Disordered Region (DISEMBL)
ASLVLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSLC
Disordered Region (DISPRO)
****LSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ASLVLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.698	0.119	0.350	6e-13
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.692	0.120	0.328	1e-10
P93194	1109	Receptor-like protein kin	N/A	no	0.793	0.128	0.343	2e-10
Q9C9H7	847	Receptor-like protein 12	no	no	0.754	0.159	0.366	3e-10
Q9FL28	1173	LRR receptor-like serine/	no	no	0.675	0.103	0.392	9e-10
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.698	0.104	0.371	2e-09
O65440	992	Leucine-rich repeat recep	no	no	0.687	0.123	0.335	4e-09
O82318	960	Probably inactive leucine	no	no	0.642	0.119	0.338	6e-09
O49318	1124	Probable leucine-rich rep	no	no	0.703	0.112	0.345	8e-09
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.698	0.114	0.319	9e-09

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 29/154 (18%)

Query: 52  LNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH 111
           ++L  N+F + ++S  + Q + L    L + +  G+IPP   N+TQL  LDLSSN ++G 
Sbjct: 459 IDLSNNNF-HGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGE 517

Query: 112 IPSSLSNLE-----QLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVE---------L 157
           +P S+SN+      QL   +L+  I S I  L NL  + LSSN  SS +           
Sbjct: 518 LPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLY 577

Query: 158 YM--------------FTKLKSLEVLDLSYNKLS 177
           YM               TKL  L++LDLSYN+L 
Sbjct: 578 YMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLD 611

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 7/131 (5%)

Query: 52  LNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH 111
           L L GN+F   K+     +  SL  + L +  F G IP  F  LT+L +LDL+   L+G 
Sbjct: 202 LGLSGNNFG-GKVPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQ 260

Query: 112 IPSSLSNLEQLR-----EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
           IPSSL  L+QL      + +LT  +   +  + +L  + LS N ++  + + +  +LK+L
Sbjct: 261 IPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEV-GELKNL 319

Query: 167 EVLDLSYNKLS 177
           ++L+L  N+L+
Sbjct: 320 QLLNLMRNQLT 330

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 18/160 (11%)

Query: 18  LLHYSCLSNSFPSR-------KKLLIFA--LNESLFFILHSQNL---NLCGNDFNYSKIS 65
           LL Y+ L  S PS        ++L++    L   L   +  QNL   +L GN+F    I 
Sbjct: 458 LLGYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPDFVEKQNLLFFDLSGNNFT-GPIP 516

Query: 66  YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK 125
                 +++T + L      GSIPP   +L +L HL+LS NIL G +PS LSN  +L E 
Sbjct: 517 PSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSEL 576

Query: 126 K-----LTCSISSCIFELVNLTKVSLSSNNLSSNVELYMF 160
                 L  SI S +  L  LTK+SL  N+ S  +   +F
Sbjct: 577 DASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIPTSLF 616

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 7/142 (4%)

Query: 40  NESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLM 99
           N SLF + + ++L+L   +  Y +I         LT++NL    F G IP S  NL QL 
Sbjct: 103 NSSLFKLQYLRHLDLTNCNL-YGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLR 161

Query: 100 HLDLSSNILSGHIPSSLSNLE-----QLREKKLTCSISSCIFELVNLTKVSLSSNNLSSN 154
           HL L++N+L+G IPSSL NL      +L   +L   I   I +L  L  +SL+SNNL   
Sbjct: 162 HLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGE 221

Query: 155 VELYMFTKLKSLEVLDLSYNKL 176
           +   +   L +L  L L++N+L
Sbjct: 222 IPSSL-GNLSNLVHLVLTHNQL 242

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 66/130 (50%), Gaps = 9/130 (6%)

Query: 51  NLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG 110
           +L+L GN     KI   F    +L  L L      G IP    N + L+ L+L  N L+G
Sbjct: 220 DLDLSGNQLT-GKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTG 278

Query: 111 HIPSSLSNLEQLR-----EKKLTCSISSCIFELVNLTKVSLSSNNLSSNV-ELYMFTKLK 164
            IP+ L NL QL+     + KLT SI S +F L  LT + LS N+L   + E   F  L+
Sbjct: 279 KIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGF--LE 336

Query: 165 SLEVLDLSYN 174
           SLEVL L  N
Sbjct: 337 SLEVLTLHSN 346

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 64/132 (48%), Gaps = 7/132 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q LNL  N  N   I   F    SL  LNL      G +P S  NL +L H+DLS N LS
Sbjct: 655 QGLNLANNQLN-GHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLS 713

Query: 110 GHIPSSLSNLEQL-----REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
           G + S LS +E+L      + K T  I S +  L  L  + +S N LS  +   +   L 
Sbjct: 714 GELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKI-CGLP 772

Query: 165 SLEVLDLSYNKL 176
           +LE L+L+ N L
Sbjct: 773 NLEFLNLAKNNL 784

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 8/131 (6%)

Query: 52  LNLCGNDFNYSKISYGFSQFRSLTILNLRHYN-FRGSIPPSFCNLTQLMHLDLSSNILSG 110
           L+L GND    +I    +   +L  L L +YN +RG IP  F  L  L+HLDL++  L G
Sbjct: 203 LSLSGNDLR-GRIPNELANITTLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKG 261

Query: 111 HIPSSLSNLEQ-----LREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165
            IP+ L NL+      L+  +LT S+   +  + +L  + LS+N L   + L + + L+ 
Sbjct: 262 SIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNFLEGEIPLEL-SGLQK 320

Query: 166 LEVLDLSYNKL 176
           L++ +L +N+L
Sbjct: 321 LQLFNLFFNRL 331

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 62  SKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ 121
             +     + ++L  + L + N  G IP     L+ L HLDL  N LSG IP SL +L++
Sbjct: 207 GGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKK 266

Query: 122 LR-----EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
           L      + KL+  I   IF L NL  +  S N+LS  +   +  +++SLE+L L  N L
Sbjct: 267 LEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIP-ELVAQMQSLEILHLFSNNL 325

Query: 177 S 177
           +
Sbjct: 326 T 326

Arabidopsis thaliana (taxid: 3702)

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + L L GN      I       +SL  L L      G+IP     L+++M +D S N+LS
Sbjct: 280 ETLALYGNSL-VGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLS 338

Query: 110 GHIPSSLSNLEQLR-----EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
           G IP  LS + +LR     + KLT  I + + +L NL K+ LS N+L+  +    F  L 
Sbjct: 339 GEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIP-PGFQNLT 397

Query: 165 SLEVLDLSYNKLS 177
           S+  L L +N LS
Sbjct: 398 SMRQLQLFHNSLS 410

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 16/141 (11%)

Query: 43  LFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLD 102
           L+F + S +LN          I   F  ++SL+ L L   NF G+IP     L +L  L 
Sbjct: 558 LYFDVGSNSLN--------GSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELDRLSDLR 609

Query: 103 LSSNILSGHIPSSLSNLEQLR------EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVE 156
           ++ N   G IPSS+  L+ LR          T  I + +  L+NL ++++S+N L+    
Sbjct: 610 IARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTG--P 667

Query: 157 LYMFTKLKSLEVLDLSYNKLS 177
           L +   LKSL  +D+SYN+ +
Sbjct: 668 LSVLQSLKSLNQVDVSYNQFT 688

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.703	0.125	0.462	7e-16
359485822	993	PREDICTED: receptor-like protein 12-like	0.675	0.121	0.456	1e-15
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.877	0.080	0.396	6e-15
296085003	566	unnamed protein product [Vitis vinifera]	0.765	0.242	0.350	9e-15
297745044	813	unnamed protein product [Vitis vinifera]	0.765	0.168	0.401	4e-14
356561434	846	PREDICTED: receptor-like protein 12-like	0.620	0.131	0.508	9e-14
356561448	981	PREDICTED: receptor-like protein 12-like	0.709	0.129	0.451	2e-13
356561444	863	PREDICTED: receptor-like protein 12-like	0.575	0.119	0.423	7e-13
356566654	860	PREDICTED: probable LRR receptor-like se	0.687	0.143	0.387	5e-12
351724905	759	disease resistance protein [Glycine max]	0.642	0.151	0.440	6e-12

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 77/132 (58%), Gaps = 6/132 (4%)

Query: 52  LNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH 111
           L+L  NDF+   +++   Q + LT L L   N  G IP S  N+++L  L LS N L G 
Sbjct: 348 LDLSSNDFSVGTLAWVGKQTK-LTYLYLDQMNLTGEIPSSLVNMSELTILSLSRNQLIGQ 406

Query: 112 IPSSLSNLEQL-----REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
           IPS L NL QL      E KL   I S +FELVNL  + L SN L+  VEL+M +KLK+L
Sbjct: 407 IPSWLMNLTQLTELYLEENKLEGPIPSSLFELVNLQSLYLHSNYLTGTVELHMLSKLKNL 466

Query: 167 EVLDLSYNKLSL 178
             L LS N+LSL
Sbjct: 467 TGLLLSGNRLSL 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 77/127 (60%), Gaps = 6/127 (4%)

Query: 57  NDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSL 116
           N+F+   +++   Q + LTIL L   N  G IP S  N+++L  L+LS N L G IPS L
Sbjct: 350 NNFSAGTLAWLGEQTK-LTILYLDQINLNGEIPSSLVNMSELTILNLSKNQLIGQIPSWL 408

Query: 117 SNLEQL-----REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDL 171
            NL QL     +E KL   I S +FELVNL  + L SN L+  VEL+M + LK+L  L L
Sbjct: 409 MNLTQLTELYLQENKLEGPIPSSLFELVNLQYLYLHSNYLTGTVELHMLSNLKNLTDLQL 468

Query: 172 SYNKLSL 178
           SYN++SL
Sbjct: 469 SYNRISL 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 15   MNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSL 74
            + +L H    SNSF  +       L  SL  ++H   L++  NDF+   +S+   +    
Sbjct: 1272 LTQLTHLDLSSNSFKGQ-------LTSSLTNLIHLNFLDISRNDFSVGTLSWIIVKLTKF 1324

Query: 75   TILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE-----KKLTC 129
            T LNL   N  G I PS  NLT L +L+L  N L+G IP  L NL  L+        L  
Sbjct: 1325 TALNLEKTNLIGEILPSLSNLTGLTYLNLEYNQLTGRIPPCLGNLTLLKTLGLGYNNLEG 1384

Query: 130  SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178
             I S IFEL+NL  + L +N LS  VEL M  KLK+L  L LS+N LSL
Sbjct: 1385 PIPSSIFELMNLDTLILRANKLSGTVELNMLVKLKNLHKLGLSHNDLSL 1433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085003|emb|CBI28418.3| unnamed protein product [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 89/191 (46%), Gaps = 54/191 (28%)

Query: 42  SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHL 101
           +LF ++H + L+L  NDFNYS+I +G  Q   L  LNL +  F G IP     L++L+ L
Sbjct: 43  TLFSLVHLRRLDLSDNDFNYSRIPHGVGQLSRLRSLNLSNSQFSGQIPSKLLALSKLVSL 102

Query: 102 DLSSN--ILSGH-----------------------------------------------I 112
           DLSSN   L+GH                                               +
Sbjct: 103 DLSSNPTYLTGHLPEFHNASHLKYLDLYWTSFSGQLPASIGFLSSLKELDICSCNFSGMV 162

Query: 113 PSSLSNLEQLREKKLTCS-----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167
           P++L NL QL    L+ +     I S IFEL+NL  + L +N LS  VEL M  KLK+L 
Sbjct: 163 PTALGNLTQLTHLDLSSNSFKGPIPSSIFELMNLDTLILRANKLSGTVELNMLVKLKNLH 222

Query: 168 VLDLSYNKLSL 178
            L LS+N LSL
Sbjct: 223 KLGLSHNDLSL 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745044|emb|CBI38636.3| unnamed protein product [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 82/152 (53%), Gaps = 15/152 (9%)

Query: 7   ECARNCAFMNRL-LHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKIS 65
           EC R    +  L L  SCL  S  S         + +LF ++H + L+L  NDFNYS+I 
Sbjct: 219 ECDRETGHVIGLHLASSCLYGSINS---------SSTLFSLVHLRRLDLSDNDFNYSEIP 269

Query: 66  YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK 125
           +G  Q   L +L++   NF G +P    +L QL +LDLS+N  SG IPS ++NL QL   
Sbjct: 270 FGVGQLSRLRMLDISSCNFTGLVPSPLGHLPQLSYLDLSNNYFSGQIPSFMANLTQLTYL 329

Query: 126 KLT----CSISSCIFELV-NLTKVSLSSNNLS 152
            L+      I S +FEL+ NLT   LS N LS
Sbjct: 330 DLSFNNFSGIPSSLFELLKNLTDFQLSGNRLS 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561434|ref|XP_003548986.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 70/116 (60%), Gaps = 5/116 (4%)

Query: 64  ISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPS----SLSNL 119
           I   FS    LT L L   N +GSIPPSF NLT L  LDLS N L+G IPS    SL  L
Sbjct: 229 IPPSFSNLIHLTSLYLSSNNLKGSIPPSFSNLTHLTSLDLSYNNLNGSIPSFSSYSLKRL 288

Query: 120 EQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNK 175
             L   KL  +I   IF L+NLT + LSSNNLS +V+ + F+KL++L VL LS N 
Sbjct: 289 F-LSHNKLQGNIPESIFSLLNLTDLDLSSNNLSGSVKFHHFSKLQNLGVLYLSQND 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561448|ref|XP_003548993.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 8/135 (5%)

Query: 46  ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC-NLTQLMHLDLS 104
           ++H  +L+L GN+ N S   + FS F  LT L+L   N  G+IP S+C +L  L+ LDLS
Sbjct: 349 LIHLTSLDLSGNNLNGSIPPF-FSNFTHLTSLDLSENNLNGTIP-SWCLSLPSLVGLDLS 406

Query: 105 SNILSGHIPSSLSN--LEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMF 160
            N  SGHI S++S+  LE+L     KL  +I   IF L+NLT + LSSNNLS +V+ + F
Sbjct: 407 GNQFSGHI-SAISSYSLERLILSHNKLQGNIPESIFSLLNLTDLDLSSNNLSGSVKFHHF 465

Query: 161 TKLKSLEVLDLSYNK 175
           +KL++L+ L LS N 
Sbjct: 466 SKLQNLKELQLSQND 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561444|ref|XP_003548991.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 68/130 (52%), Gaps = 27/130 (20%)

Query: 73  SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR--------- 123
           SL  L+L    F+GSIPPSF NL  L  LDLS N L+G IP S SNL  L          
Sbjct: 235 SLDFLDLSLCGFQGSIPPSFSNLIHLTSLDLSGNNLNGSIPPSFSNLIHLTSLDLSYNNL 294

Query: 124 ------------------EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165
                               KL  +I   IF L+NLT + LSSNNLS +V+ + F+KL++
Sbjct: 295 NGSIPSFSSYSLETLFLSHNKLQGNIPESIFSLLNLTHLDLSSNNLSGSVKFHRFSKLQN 354

Query: 166 LEVLDLSYNK 175
           LE L LS+N 
Sbjct: 355 LEKLHLSWND 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566654|ref|XP_003551545.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 6/129 (4%)

Query: 51  NLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG 110
           N+ L G     +  +  FS   ++ IL++ H +  GSIPP    L+QL HL L  N LSG
Sbjct: 71  NITLRGIGLTGTLQTLNFSSLPNILILDMSHNSLNGSIPPQIGVLSQLTHLGLGVNNLSG 130

Query: 111 HIPSSLSNLEQ-----LREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165
            IPS++ NL +     LR  KL+  I S I  L  L+ ++L SN LS N+ + +  KL +
Sbjct: 131 PIPSTIGNLTKLTKLSLRSNKLSGPIPSTIGNLTKLSTLALFSNKLSGNIPIEL-NKLSN 189

Query: 166 LEVLDLSYN 174
           L++L  SYN
Sbjct: 190 LKILSFSYN 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724905|ref|NP_001235538.1| disease resistance protein [Glycine max] gi|223452548|gb|ACM89601.1| disease resistance protein [Glycine max]

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 3/118 (2%)

Query: 62  SKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPS-SLSNLE 120
             I       +SL +L +R+ NF G IP S  NLTQL  LDLS N L+G I   S  +LE
Sbjct: 149 GNIPDSIGHMKSLKMLGVRNCNFDGMIPSSLFNLTQLSGLDLSDNHLTGSIGEFSSYSLE 208

Query: 121 --QLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
              L   KL  +  + IF+  NLT ++LSS +LS +++L+ F+KLK+L+ LDLS+N L
Sbjct: 209 YLSLSNNKLQANFLNSIFQFQNLTYLNLSSTDLSGHLDLHQFSKLKNLKYLDLSHNSL 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.748	0.150	0.338	2.1e-12
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.458	0.096	0.421	9.9e-12
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.458	0.101	0.421	1.1e-11
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.877	0.178	0.298	1.7e-11
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.418	0.071	0.355	4.6e-11
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.748	0.146	0.330	5.2e-11
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.424	0.083	0.435	5.3e-11
TAIR|locus:2154463	589	AT5G23400 [Arabidopsis thalian	0.687	0.208	0.335	1.1e-10
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.821	0.185	0.324	2.3e-10
UNIPROTKB|Q942F3	1121	P0480C01.18-1 "cDNA clone:J033	0.391	0.062	0.464	2.8e-10

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 48/142 (33%), Positives = 66/142 (46%)

Query:    40 NESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLM 99
             N SLF   H ++L L  N+F  S IS  F    +L +L+L    F   +P SF NL+ L 
Sbjct:    91 NSSLFQFHHLRSLLLPHNNFTSSSISSKFGMLNNLEVLSLSSSGFLAQVPFSFSNLSMLS 150

Query:   100 HLDLSSNILSGHIPSSLSNLEQLREKKLT-------CSISSCIFEXXXXXXXXXXXXXXX 152
              LDLS N L+G + S + NL +LR   ++        + +S +FE               
Sbjct:   151 ALDLSKNELTGSL-SFVRNLRKLRVLDVSYNHFSGILNPNSSLFELHHLIYLNLRYNNFT 209

Query:   153 XXXXXYMFTKLKSLEVLDLSYN 174
                  Y F  L  LEVLD+S N
Sbjct:   210 SSSLPYEFGNLNKLEVLDVSSN 231

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
 Identities = 35/83 (42%), Positives = 49/83 (59%)

Query:    40 NESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLM 99
             N SLF + + ++L+L   +  Y +I         LT++NL    F G IP S  NL QL 
Sbjct:   103 NSSLFKLQYLRHLDLTNCNL-YGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLR 161

Query:   100 HLDLSSNILSGHIPSSLSNLEQL 122
             HL L++N+L+G IPSSL NL +L
Sbjct:   162 HLILANNVLTGEIPSSLGNLSRL 184

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 35/83 (42%), Positives = 46/83 (55%)

Query:    40 NESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLM 99
             N SLF + H + LNL  N+F  + +  GF     L +L L    F G +P SF NL+QL 
Sbjct:    90 NSSLFGLQHLRYLNLSNNNFTSASLPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLN 149

Query:   100 HLDLSSNILSGHIPSSLSNLEQL 122
              LDLS N L+G  P  + NL +L
Sbjct:   150 ILDLSHNELTGSFPF-VQNLTKL 171

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 52/174 (29%), Positives = 75/174 (43%)

Query:     8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYG 67
             C  +   + ++   +CLS +  S         N SLF     ++L L  N+F  S IS  
Sbjct:    68 CDNSTGAVTKIQFMACLSGTLKS---------NSSLFQFHELRSLLLIHNNFTSSSISSK 118

Query:    68 FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
             F     L +L L    F G +P SF NL+ L  LDLS N L+G + S + NL +LR   +
Sbjct:   119 FGMLNKLEVLFLSSSGFLGQVPFSFSNLSMLSALDLSDNELTGSL-SFVRNLRKLRVLDV 177

Query:   128 T-------CSISSCIFEXXXXXXXXXXXXXXXXXXXXYMFTKLKSLEVLDLSYN 174
             +        + +S +FE                    Y F  L  LE+LD+S N
Sbjct:   178 SYNHFSGILNPNSSLFELHHLTYLSLGSNSFTSSTLPYEFGNLNKLELLDVSSN 231

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
 Identities = 27/76 (35%), Positives = 48/76 (63%)

Query:    52 LNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH 111
             ++L  N+F + ++S  + Q + L    L + +  G+IPP   N+TQL  LDLSSN ++G 
Sbjct:   459 IDLSNNNF-HGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGE 517

Query:   112 IPSSLSNLEQLREKKL 127
             +P S+SN+ ++ + +L
Sbjct:   518 LPESISNINRISKLQL 533

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
 Identities = 47/142 (33%), Positives = 65/142 (45%)

Query:    40 NESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLM 99
             N SLF   H ++L L  N+F  S IS  F    +L +L+L    F   +P SF NL+ L 
Sbjct:   122 NSSLFQFHHLRSLLLPHNNFTSSSISSKFGMLNNLEVLSLSSSGFLAQVPFSFSNLSMLS 181

Query:   100 HLDLSSNILSGHIPSSLSNLEQLREKKLT-------CSISSCIFEXXXXXXXXXXXXXXX 152
              L LS+N L+G + S   NL +LR   ++        + +S +FE               
Sbjct:   182 ALVLSNNDLTGSL-SFARNLRKLRVLDVSYNHFSGILNPNSSLFELHHIIYLNLRYNNFT 240

Query:   153 XXXXXYMFTKLKSLEVLDLSYN 174
                  Y F  L  LEVLD+S N
Sbjct:   241 SSSLPYEFGNLNKLEVLDVSSN 262

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
 Identities = 34/78 (43%), Positives = 47/78 (60%)

Query:    52 LNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG 110
             L+L  N   YS + +  F + ++L  L+LR  NF G +P  F NL +L  LDLSSN L+G
Sbjct:   200 LDLSSNGI-YSSMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTG 258

Query:   111 HIPSSLSNLEQLREKKLT 128
             +IP S S+LE L    L+
Sbjct:   259 NIPPSFSSLESLEYLSLS 276

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2154463 AT5G23400 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 43/128 (33%), Positives = 58/128 (45%)

Query:    52 LNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH 111
             L+L GN F+   +   F   R LT +NL   +F G IP +F NL +L +LDLSSN+LSG 
Sbjct:   161 LSLAGNRFS-GLVPASFGSLRRLTTMNLARNSFSGPIPVTFKNLLKLENLDLSSNLLSGP 219

Query:   112 IPSSLSNLEQLREKKLTCSISSCIFEXXXXXXXXXXXXXXXXXXXXY----MFTKLKSLE 167
             IP  +   + L    L+ +  S +                            F+ LKSL 
Sbjct:   220 IPDFIGQFQNLTNLYLSSNRFSGVLPVSVYSLRKLQTMSLERNGLTGPLSDRFSYLKSLT 279

Query:   168 VLDLSYNK 175
              L LS NK
Sbjct:   280 SLQLSGNK 287

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 49/151 (32%), Positives = 71/151 (47%)

Query:    31 RKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP 90
             R+ L     N SLF   H + L+L  N F+ S I  GF +   L  L+L    F G +P 
Sbjct:    98 RQCLTSLKANSSLFRFQHLRYLDLSENHFDSSPIPSGFGRLTYLESLDLSKNGFIGEVPS 157

Query:    91 SFCNLTQLMHLDLSSNILSGHIPS--SLSNLEQ--LREKKLTCSISSCIFEXXXXXXXXX 146
             S  NL++L +LDLS N L+G IP+  SL+ LE   L   K + +I S +F          
Sbjct:   158 SISNLSRLTNLDLSYNKLTGGIPNLHSLTLLENIDLSYNKFSGAIPSYLFTMPFLVSLNL 217

Query:   147 XXXXXXXXXXXYMFTKLKSLEVLDLSYNKLS 177
                          ++    L +LD++YN +S
Sbjct:   218 RQNHLSDPLENINYSATSKLLILDMAYNLMS 248

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

UNIPROTKB|Q942F3 P0480C01.18-1 "cDNA clone:J033069J12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 135 (52.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 33/71 (46%), Positives = 43/71 (60%)

Query:    47 LHSQN-LNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSS 105
             L S N LNL  N+F+       F++ + LT L+L   +F GSIP +  +L +L  LDLSS
Sbjct:   268 LTSLNALNLSNNNFSGELPGEAFAKLQQLTALSLSFNHFNGSIPDTVASLPELQQLDLSS 327

Query:   106 NILSGHIPSSL 116
             N  SG IPSSL
Sbjct:   328 NTFSGTIPSSL 338

GO:0001578 "microtubule bundle formation" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029123001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (983 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 70  QFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR-----E 124
           Q +SL  + L + N  G IP     LT L HLDL  N L+G IPSSL NL+ L+     +
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 125 KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            KL+  I   IF L  L  + LS N+LS  +   +  +L++LE+L L  N  +
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFT 321

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 6/119 (5%)

Query: 64  ISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL- 122
           I Y      SL  L+L + N  G IP S  NL  L +L L  N LSG IP S+ +L++L 
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 123 ----REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                +  L+  I   + +L NL  + L SNN +  + + + T L  L+VL L  NK S
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFS 345

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 7e-10
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 48  HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNI 107
           H Q++NL GN      I        SL +L+L + +F GSIP S   LT L  L+L+ N 
Sbjct: 443 HLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 108 LSGHIPSSL 116
           LSG +P++L
Sbjct: 502 LSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 20/101 (19%)

Query: 77  LNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIF 136
           L+L    F G++P    +L++LM L LS N LSG IP  LS+ +                
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK---------------- 523

Query: 137 ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
               L  + LS N LS  +    F+++  L  LDLS N+LS
Sbjct: 524 ---KLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 26/55 (47%), Positives = 33/55 (60%)

Query: 69  SQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR 123
           S+ R L  +NL   + RG+IPPS  ++T L  LDLS N  +G IP SL  L  LR
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 7/133 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q L L  N F+  +I     +  +LT+L+L   N  G IP   C+   L  L L SN L 
Sbjct: 335 QVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 110 GHIPSSLSNLEQLR-----EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
           G IP SL     LR     +   +  + S   +L  +  + +S+NNL   +    +  + 
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMP 452

Query: 165 SLEVLDLSYNKLS 177
           SL++L L+ NK  
Sbjct: 453 SLQMLSLARNKFF 465

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 52  LNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH 111
           L+L  N+F   KI    +    L +L L    F G IP +      L  LDLS+N L+G 
Sbjct: 313 LHLFSNNFT-GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 112 IPSSLSNLEQLR---------EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162
           IP  L +   L          E ++  S+ +C     +L +V L  N+ S  +    FTK
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC----RSLRRVRLQDNSFSGELP-SEFTK 426

Query: 163 LKSLEVLDLSYNKLS 177
           L  +  LD+S N L 
Sbjct: 427 LPLVYFLDISNNNLQ 441

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 46/138 (33%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 45  FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLS 104
            I + + L+L  N  +  +I      F SL +L+L      G IP S  NLT L  L L+
Sbjct: 138 SIPNLETLDLSNNMLS-GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196

Query: 105 SNILSGHIPSSLSNLEQLR-----EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYM 159
           SN L G IP  L  ++ L+        L+  I   I  L +L  + L  NNL+  +    
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-S 255

Query: 160 FTKLKSLEVLDLSYNKLS 177
              LK+L+ L L  NKLS
Sbjct: 256 LGNLKNLQYLFLYQNKLS 273

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 51  NLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG 110
            L L  N  +  +I    S  + L  L+L H    G IP SF  +  L  LDLS N LSG
Sbjct: 503 QLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561

Query: 111 HIPSSLSNLEQL 122
            IP +L N+E L
Sbjct: 562 EIPKNLGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 63  KISYGFSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNILSGHIPS-SLSNLE 120
           KIS    +   +  +NL +    G IP   F   + L +L+LS+N  +G IP  S+ NLE
Sbjct: 84  KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE 143

Query: 121 --QLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
              L    L+  I + I    +L  + L  N L   +   + T L SLE L L+ N+L
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQL 200

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 77  LNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR-----EKKLTCSI 131
           L L +   RG IP     L  L  ++LS N + G+IP SL ++  L            SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 132 SSCIFELVNLTKVSLSSNNLSSNV 155
              + +L +L  ++L+ N+LS  V
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 51  NLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG 110
           +L+L  N  +  +I   FS+   L+ L+L      G IP +  N+  L+ +++S N L G
Sbjct: 527 SLDLSHNQLS-GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Query: 111 HIPSS 115
            +PS+
Sbjct: 586 SLPST 590

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.6
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.53
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.45
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.33
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.33
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.3
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.28
PLN03150	623	hypothetical protein; Provisional	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
PLN03150	623	hypothetical protein; Provisional	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.09
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.08
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.03
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.02
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.98
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.94
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.85
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.77
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.56
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.5
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.46
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.2
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.07
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.99
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.77
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.7
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.63
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.49
PRK15386	426	type III secretion protein GogB; Provisional	97.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.02
PRK15386	426	type III secretion protein GogB; Provisional	96.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.86
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.47
smart00370	26	LRR Leucine-rich repeats, outliers.	93.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.93
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.67
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.49
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.39
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.33
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.73
KOG4308	478	consensus LRR-containing protein [Function unknown	84.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.36
KOG1947	482	consensus Leucine rich repeat proteins, some prote	81.15

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.78  E-value=1e-18  Score=150.71  Aligned_cols=135  Identities=33%  Similarity=0.403  Sum_probs=67.6

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+..+++|++|++++|.+. ...|..+.++++|++|++++|.+.+..|..+..+++|+++++++|.+.+.+|..+..++
T Consensus       158 ~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        158 NDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             hHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence            44555555555555555554 23444455555555555555555555555555555555555555555545555555555


Q ss_pred             ccccccc-----cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          121 QLREKKL-----TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       121 ~L~~~~l-----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +|+.+.+     .+..|..++.+++|++|++++|.+.+.+|..+.. +++|+.|++++|.++
T Consensus       237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLS  297 (968)
T ss_pred             CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeec
Confidence            5544322     2234444444444555555555444433333332 444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.77  E-value=1.6e-18  Score=149.51  Aligned_cols=155  Identities=34%  Similarity=0.425  Sum_probs=95.4

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP   89 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   89 (179)
                      .+++|+.|++++|.+.+.+|           ..+.++++|++|++++|.++ ...|..+..+++|+.|++++|.+.+..|
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p-----------~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p  229 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIP-----------NSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWIYLGYNNLSGEIP  229 (968)
T ss_pred             cCCCCCEEECccCcccccCC-----------hhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccEEECcCCccCCcCC
Confidence            34566666666666665666           66777777777777777776 3456666677777777777777766666


Q ss_pred             ccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc-----cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092           90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL-----TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK  164 (179)
Q Consensus        90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l-----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  164 (179)
                      ..++.+++|++|++++|.+.+.+|..+..+++|+.+.+     .+..|..+..+++|++|++++|.+.+.+|..+.. ++
T Consensus       230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~  308 (968)
T PLN00113        230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQ  308 (968)
T ss_pred             hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CC
Confidence            66777777777777777766666666666666655333     2344445555555555555555555444433332 55


Q ss_pred             CCcEEEccCCccc
Q 042092          165 SLEVLDLSYNKLS  177 (179)
Q Consensus       165 ~L~~L~l~~n~l~  177 (179)
                      +|+.|++++|.++
T Consensus       309 ~L~~L~l~~n~~~  321 (968)
T PLN00113        309 NLEILHLFSNNFT  321 (968)
T ss_pred             CCcEEECCCCccC
Confidence            5555555555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=8.2e-18  Score=114.99  Aligned_cols=150  Identities=25%  Similarity=0.305  Sum_probs=123.9

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      ...+++|-+++|.++ .+|           +.+..+.+|+.|++++|.+.  ..|..++.+++|+.|++..|++. ++|.
T Consensus        32 ~s~ITrLtLSHNKl~-~vp-----------pnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lpr   96 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVP-----------PNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPR   96 (264)
T ss_pred             hhhhhhhhcccCcee-ecC-----------CcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCcc
Confidence            356678889999988 566           68899999999999999995  57777889999999999999988 8899


Q ss_pred             cccCCCCccEEEcCCCccCC-CCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           91 SFCNLTQLMHLDLSSNILSG-HIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      .|+.++-|+.+|+.+|.+.. .+|..|-.+..|+.+.+..    .+|..++.+++|+.|.+.+|.+.+ .|+++.. +..
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~-lt~  174 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGD-LTR  174 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHHHHH-HHH
Confidence            99999999999999998843 5677777777777655553    467788888889999999998887 7888777 888


Q ss_pred             CcEEEccCCccc
Q 042092          166 LEVLDLSYNKLS  177 (179)
Q Consensus       166 L~~L~l~~n~l~  177 (179)
                      |++|.+++|+++
T Consensus       175 lrelhiqgnrl~  186 (264)
T KOG0617|consen  175 LRELHIQGNRLT  186 (264)
T ss_pred             HHHHhcccceee
Confidence            889998888875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.60  E-value=1.2e-16  Score=126.59  Aligned_cols=157  Identities=25%  Similarity=0.223  Sum_probs=102.6

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      +..+.++++|+|+.|.++..--           ..+..++.|+.|++++|.|. .+-+..+...++|++|++++|.++..
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~-----------g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNE-----------GWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             eeeecccceeecccchhhhhhc-----------ccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccC
Confidence            4445566666666666653222           44556666677777777665 45555666667777777777777655


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCc---cccccCCCcccEEEcCCCccCCchhhHh
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSI---SSCIFELVNLTKVSLSSNNLSSNVELYM  159 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~  159 (179)
                      .+.+|..+..|+.|+++.|.++...-..|..+++|+.+++.     +.+   ...+..+++|+.|++.+|++.. +++-.
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krA  411 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRA  411 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhh
Confidence            55556666677777777777663334455555555554443     222   2345668899999999999988 77666


Q ss_pred             hcCCCCCcEEEccCCccc
Q 042092          160 FTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       160 ~~~l~~L~~L~l~~n~l~  177 (179)
                      +..+++|++||+.+|.|-
T Consensus       412 fsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  412 FSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             hccCcccceecCCCCcce
Confidence            666999999999998773

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.60  E-value=4.3e-16  Score=123.46  Aligned_cols=90  Identities=24%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ....+.|+.+||+.|.++ .++.          ..+..-.++++|+|++|.|+ ..-...|..+.+|..|.+++|+++..
T Consensus       145 L~~l~alrslDLSrN~is-~i~~----------~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  145 LSALPALRSLDLSRNLIS-EIPK----------PSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             HHhHhhhhhhhhhhchhh-cccC----------CCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccccc
Confidence            344556666666666665 3320          23333445566666666665 34444555555666666666666544


Q ss_pred             CCccccCCCCccEEEcCCCccC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~  109 (179)
                      .+..|+.++.|+.|++.+|.|.
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             CHHHhhhcchhhhhhcccccee
Confidence            4444555566666666655554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=9e-17  Score=109.93  Aligned_cols=138  Identities=24%  Similarity=0.313  Sum_probs=121.5

Q ss_pred             hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092            6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus         6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      +.-+.+.+|+.|++++|++. .+|           .++++++.|++|++.-|.+.  ..|..|+.++-|+.||+++|.+.
T Consensus        50 pnia~l~nlevln~~nnqie-~lp-----------~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   50 PNIAELKNLEVLNLSNNQIE-ELP-----------TSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             CcHHHhhhhhhhhcccchhh-hcC-----------hhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccc
Confidence            34456788999999999998 788           79999999999999999985  68888999999999999999987


Q ss_pred             C-CCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHh
Q 042092           86 G-SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYM  159 (179)
Q Consensus        86 ~-~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  159 (179)
                      . .+|..|..+..|+.+++++|++. .+|+.++.+++|+.+.+..    .+|.+++.+..|++|++.+|++.- +|.++
T Consensus       116 e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v-lppel  192 (264)
T KOG0617|consen  116 ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV-LPPEL  192 (264)
T ss_pred             cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee-cChhh
Confidence            4 57888999999999999999998 8899999999999876654    578999999999999999999987 55443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.53  E-value=1.4e-15  Score=121.91  Aligned_cols=151  Identities=28%  Similarity=0.342  Sum_probs=94.0

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ..|+.||||+|++. +.|           ..+..-++...|++++|.|. .+....|.+++-|-+||+++|++. .+|+.
T Consensus       103 ~dLt~lDLShNqL~-EvP-----------~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ  168 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVP-----------TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQ  168 (1255)
T ss_pred             ccceeeecchhhhh-hcc-----------hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence            44555555555555 445           45555555555666666653 333344455556666666666655 55666


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      ...+..|++|++++|.+.-.-...+-.+.+|+.+.+++      ++|..+..+.+|+.+|++.|.+.. .|+.+.. +++
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~-l~~  246 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYK-LRN  246 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhh-hhh
Confidence            66666666666666655311112222334444444442      578888888889999999999887 7887777 899


Q ss_pred             CcEEEccCCcccc
Q 042092          166 LEVLDLSYNKLSL  178 (179)
Q Consensus       166 L~~L~l~~n~l~~  178 (179)
                      |+.|++|+|.|+.
T Consensus       247 LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  247 LRRLNLSGNKITE  259 (1255)
T ss_pred             hheeccCcCceee
Confidence            9999999998863

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.45  E-value=6.3e-15  Score=118.19  Aligned_cols=150  Identities=27%  Similarity=0.367  Sum_probs=120.8

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      ..+.+|..+|+|.|.+. .+|           +.+.++.+|+.|++++|.|+ . ..-....+.+|++|++++|+++ .+
T Consensus       219 d~l~NL~dvDlS~N~Lp-~vP-----------ecly~l~~LrrLNLS~N~it-e-L~~~~~~W~~lEtLNlSrNQLt-~L  283 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNLP-IVP-----------ECLYKLRNLRRLNLSGNKIT-E-LNMTEGEWENLETLNLSRNQLT-VL  283 (1255)
T ss_pred             hhhhhhhhccccccCCC-cch-----------HHHhhhhhhheeccCcCcee-e-eeccHHHHhhhhhhccccchhc-cc
Confidence            34566777788888777 677           78888888899999999887 2 3333467788888899999988 88


Q ss_pred             CccccCCCCccEEEcCCCccCC-CCCCcCCCCccccc----ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCC
Q 042092           89 PPSFCNLTQLMHLDLSSNILSG-HIPSSLSNLEQLRE----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL  163 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~----~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l  163 (179)
                      |..+++++.|+.|.+.+|+++. -+|..++.+..|+.    ++.-.-+|+.+.+|+.|+.|.++.|++.. .|+.+.- +
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHl-L  361 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHL-L  361 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee-chhhhhh-c
Confidence            8888899999999888888854 46888888888776    34445688899999999999999999987 7877766 8


Q ss_pred             CCCcEEEccCCc
Q 042092          164 KSLEVLDLSYNK  175 (179)
Q Consensus       164 ~~L~~L~l~~n~  175 (179)
                      +.|+.||+..|+
T Consensus       362 ~~l~vLDlreNp  373 (1255)
T KOG0444|consen  362 PDLKVLDLRENP  373 (1255)
T ss_pred             CCcceeeccCCc
Confidence            999999999884

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.33  E-value=1.4e-12  Score=91.02  Aligned_cols=126  Identities=27%  Similarity=0.323  Sum_probs=48.1

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchh-ccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLF-FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP   89 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   89 (179)
                      ...++.|+|.+|.++. +.            .+. .+.+|+.|++++|.++  ... .+..+++|+.|++++|.++. .+
T Consensus        18 ~~~~~~L~L~~n~I~~-Ie------------~L~~~l~~L~~L~Ls~N~I~--~l~-~l~~L~~L~~L~L~~N~I~~-i~   80 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-IE------------NLGATLDKLEVLDLSNNQIT--KLE-GLPGLPRLKTLDLSNNRISS-IS   80 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S--C
T ss_pred             cccccccccccccccc-cc------------chhhhhcCCCEEECCCCCCc--ccc-CccChhhhhhcccCCCCCCc-cc
Confidence            3467888999998873 33            454 4678889999999886  333 36788899999999999884 44


Q ss_pred             ccc-cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCch--hhHhhcCCCCC
Q 042092           90 PSF-CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNV--ELYMFTKLKSL  166 (179)
Q Consensus        90 ~~l-~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~l~~L  166 (179)
                      +.+ ..+++|+.|++++|++...  ..+                ..+..+++|++|++.+|.+....  ...+...+|+|
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l--~~l----------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L  142 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDL--NEL----------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL  142 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SC--CCC----------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-
T ss_pred             cchHHhCCcCCEEECcCCcCCCh--HHh----------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh
Confidence            444 3578999999999988621  111                23345678999999999997632  22344559999


Q ss_pred             cEEEc
Q 042092          167 EVLDL  171 (179)
Q Consensus       167 ~~L~l  171 (179)
                      +.||-
T Consensus       143 k~LD~  147 (175)
T PF14580_consen  143 KVLDG  147 (175)
T ss_dssp             SEETT
T ss_pred             heeCC
Confidence            98874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.33  E-value=1.5e-13  Score=113.76  Aligned_cols=159  Identities=25%  Similarity=0.225  Sum_probs=120.0

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhhee-----------------cc-cchhccccceEEEeeCccccCCcccccccC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFA-----------------LN-ESLFFILHSQNLNLCGNDFNYSKISYGFSQ   70 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~-----------------~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~   70 (179)
                      .+.++|+.|+|..|.+. ++|.   .....                 .+ ..=..++.|+.|++.+|.+++ ..-..+.+
T Consensus       307 e~~~sL~tLdL~~N~L~-~lp~---~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-~c~p~l~~  381 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQSNNLP-SLPD---NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD-SCFPVLVN  381 (1081)
T ss_pred             cccceeeeeeehhcccc-ccch---HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc-cchhhhcc
Confidence            45788999999999887 5552   11110                 00 011234678888999999984 55556889


Q ss_pred             CCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc----cCCccccccCCCcccEEEc
Q 042092           71 FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL----TCSISSCIFELVNLTKVSL  146 (179)
Q Consensus        71 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l----~~~~~~~~~~~~~L~~L~l  146 (179)
                      ..+|+.|++++|.+.......+.++..|+.|++++|+++ .+|..+..+..|+.+--    ....| ++..+++|+.+|+
T Consensus       382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEec
Confidence            999999999999999555556788999999999999998 78888888888876333    33556 8888999999999


Q ss_pred             CCCccCCchhhHhhcCCCCCcEEEccCCc
Q 042092          147 SSNNLSSNVELYMFTKLKSLEVLDLSYNK  175 (179)
Q Consensus       147 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  175 (179)
                      +.|.+....-.+ ....++|++||+++|.
T Consensus       460 S~N~L~~~~l~~-~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  460 SCNNLSEVTLPE-ALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ccchhhhhhhhh-hCCCcccceeeccCCc
Confidence            999998844332 2335899999999996

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.30  E-value=5e-14  Score=107.55  Aligned_cols=131  Identities=25%  Similarity=0.328  Sum_probs=86.9

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..++++.++..+++.+|+++ ...+. .-.|+.|+.+|...|-+. .+|+.++.+.+|+.+++.+|++. .+| .|..+.
T Consensus       154 ~~~~~~~~l~~l~~~~n~l~-~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs  228 (565)
T KOG0472|consen  154 EDMVNLSKLSKLDLEGNKLK-ALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCS  228 (565)
T ss_pred             hHHHHHHHHHHhhccccchh-hCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccH
Confidence            55666666666666666665 23333 334666666666666655 66666677777777777777766 445 455555


Q ss_pred             cccccccc----CCcccccc-CCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          121 QLREKKLT----CSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       121 ~L~~~~l~----~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      .|....+.    ..+|.+.. .++++.+||+.+|++++ .|.+++. +++|..||+++|.|++
T Consensus       229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~cl-LrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICL-LRSLERLDLSNNDISS  289 (565)
T ss_pred             HHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHH-hhhhhhhcccCCcccc
Confidence            55553333    23454444 67888899999999988 7777776 8889999999998875

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.28  E-value=3.5e-13  Score=103.00  Aligned_cols=147  Identities=23%  Similarity=0.335  Sum_probs=107.8

Q ss_pred             ceeeecccccCCCCCCcchhhhheecccchhccccc-eEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092           14 FMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF   92 (179)
Q Consensus        14 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   92 (179)
                      +...+++.|++. ++|           ..+..+..+ +.+.+++|.+.  ..+..++.+++|..|++++|.+. .+|..+
T Consensus       390 Vt~VnfskNqL~-elP-----------k~L~~lkelvT~l~lsnn~is--fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~  454 (565)
T KOG0472|consen  390 VTSVNFSKNQLC-ELP-----------KRLVELKELVTDLVLSNNKIS--FVPLELSQLQKLTFLDLSNNLLN-DLPEEM  454 (565)
T ss_pred             eEEEecccchHh-hhh-----------hhhHHHHHHHHHHHhhcCccc--cchHHHHhhhcceeeecccchhh-hcchhh
Confidence            344555555555 444           455555444 34566666664  45666788899999999999888 778888


Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCCCccccc-----ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE  167 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~-----~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  167 (179)
                      +.+-.||+++++.|++. .+|..+..+..++.     +.+...-++.+..+.+|..||+.+|.+.. +|+.++. |.+|+
T Consensus       455 ~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~Lgn-mtnL~  531 (565)
T KOG0472|consen  455 GSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGN-MTNLR  531 (565)
T ss_pred             hhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhcc-cccee
Confidence            88888999999999887 66765554444433     34444445568888999999999999998 7777666 99999


Q ss_pred             EEEccCCcccc
Q 042092          168 VLDLSYNKLSL  178 (179)
Q Consensus       168 ~L~l~~n~l~~  178 (179)
                      +|++++|+|.-
T Consensus       532 hLeL~gNpfr~  542 (565)
T KOG0472|consen  532 HLELDGNPFRQ  542 (565)
T ss_pred             EEEecCCccCC
Confidence            99999999863

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.28  E-value=1.3e-12  Score=99.60  Aligned_cols=15  Identities=20%  Similarity=0.332  Sum_probs=8.4

Q ss_pred             ccCceeeecccccCC
Q 042092           11 NCAFMNRLLHYSCLS   25 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~   25 (179)
                      +++|+.|++++|.+.
T Consensus        80 ~~~L~~L~l~~~~~~   94 (319)
T cd00116          80 GCGLQELDLSDNALG   94 (319)
T ss_pred             cCceeEEEccCCCCC
Confidence            445555566555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.24  E-value=2.4e-11  Score=100.62  Aligned_cols=94  Identities=33%  Similarity=0.476  Sum_probs=81.9

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF   92 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   92 (179)
                      .++.|+|++|.+.+.+|           ..+..+++|+.|++++|.+. ...|..+..+++|+.|++++|.+++..|+.+
T Consensus       419 ~v~~L~L~~n~L~g~ip-----------~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l  486 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIP-----------NDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESL  486 (623)
T ss_pred             EEEEEECCCCCccccCC-----------HHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence            37788999999988888           78889999999999999997 4677778899999999999999998889989


Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCC
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSN  118 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~  118 (179)
                      +.+++|++|++++|.+.+.+|..+..
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhh
Confidence            99999999999999998888876654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=1.9e-12  Score=102.62  Aligned_cols=132  Identities=25%  Similarity=0.411  Sum_probs=104.2

Q ss_pred             cccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCC
Q 042092           39 LNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSN  118 (179)
Q Consensus        39 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~  118 (179)
                      ++..+.++..|+.++++.|.++  ..|..+..|+ |+.|-+++|+++ .+|+.++.+.+|..+|.+.|.+. .+|..+..
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~  187 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY  187 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh
Confidence            3367788888888888888885  4555455555 788888888887 77888887788888888888887 66777777


Q ss_pred             CcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          119 LEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       119 l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +.+|+.+++..    .+|.++..+ .|..||+++|++.. +|.+|.. |++|++|-+.+|+++.
T Consensus       188 l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~-iPv~fr~-m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  188 LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISY-LPVDFRK-MRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceee-cchhhhh-hhhheeeeeccCCCCC
Confidence            77777766653    567777744 48999999999998 8888776 9999999999999875

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=6e-11  Score=98.29  Aligned_cols=107  Identities=32%  Similarity=0.439  Sum_probs=62.4

Q ss_pred             ceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc
Q 042092           49 SQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT  128 (179)
Q Consensus        49 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~  128 (179)
                      ++.|++++|.+. ...+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..             
T Consensus       420 v~~L~L~~n~L~-g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-------------  485 (623)
T PLN03150        420 IDGLGLDNQGLR-GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-------------  485 (623)
T ss_pred             EEEEECCCCCcc-ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-------------
Confidence            455566666655 344555556666666666666665555655666666666666666655555544             


Q ss_pred             CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCc
Q 042092          129 CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNK  175 (179)
Q Consensus       129 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  175 (179)
                            ++.+++|++|++++|.+.+.+|..+.....++..+++++|.
T Consensus       486 ------l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        486 ------LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ------HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence                  44455666666666666666665554433455566666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=2.7e-11  Score=84.58  Aligned_cols=113  Identities=30%  Similarity=0.365  Sum_probs=40.9

Q ss_pred             chhccccceEEEeeCccccCCccccccc-CCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISYGFS-QFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      .+.+..++++|++.+|.|+  .... +. .+.+|+.|++++|.++..  +.+..++.|++|++++|.+.. +.+.+.   
T Consensus        14 ~~~n~~~~~~L~L~~n~I~--~Ie~-L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~---   84 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIS--TIEN-LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLD---   84 (175)
T ss_dssp             ------------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHH---
T ss_pred             ccccccccccccccccccc--cccc-hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchH---
Confidence            4556667899999999996  3333 44 688999999999999844  357788999999999999973 221111   


Q ss_pred             ccccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          121 QLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       121 ~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                                     ..+++|++|++++|.|.+...-...+.+++|+.|++.+|+++.
T Consensus        85 ---------------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   85 ---------------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             ---------------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             ---------------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence                           1357899999999999884333334559999999999999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.18  E-value=1e-10  Score=98.07  Aligned_cols=77  Identities=23%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             CCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccC-CCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCC
Q 042092           96 TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN  174 (179)
Q Consensus        96 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  174 (179)
                      .+|+.|++++|.+. .+|...   ++|+.+.++++....+.. ...|+.|++++|.++. +|..+.. +++|+.|++++|
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~-LP~sl~~-L~~L~~LdLs~N  455 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIH-LSSETTVNLEGN  455 (788)
T ss_pred             cccceEEecCCccc-CCCCcc---cCCCEEEccCCcCCCCCcchhhhhhhhhccCcccc-cChHHhh-ccCCCeEECCCC
Confidence            35677777777766 345433   234443443322222221 2367888999999886 7777666 999999999999


Q ss_pred             cccc
Q 042092          175 KLSL  178 (179)
Q Consensus       175 ~l~~  178 (179)
                      +++|
T Consensus       456 ~Ls~  459 (788)
T PRK15387        456 PLSE  459 (788)
T ss_pred             CCCc
Confidence            9986

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.16  E-value=8.2e-13  Score=100.65  Aligned_cols=79  Identities=19%  Similarity=0.166  Sum_probs=43.4

Q ss_pred             ceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEE-eccCCCCCCCCccc
Q 042092           14 FMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILN-LRHYNFRGSIPPSF   92 (179)
Q Consensus        14 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~-l~~~~l~~~~~~~l   92 (179)
                      .+.++|..|+|+...+           .+|..+++|++|++++|.|+ .+.+.+|.++.+|..|. +++|+|++.....|
T Consensus        69 tveirLdqN~I~~iP~-----------~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPP-----------GAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             ceEEEeccCCcccCCh-----------hhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            3456666666663333           56666666666666666666 45666666666665443 33366664433344


Q ss_pred             cCCCCccEEEcC
Q 042092           93 CNLTQLMHLDLS  104 (179)
Q Consensus        93 ~~l~~L~~l~l~  104 (179)
                      .++.+++.|.+.
T Consensus       137 ~gL~slqrLllN  148 (498)
T KOG4237|consen  137 GGLSSLQRLLLN  148 (498)
T ss_pred             hhHHHHHHHhcC
Confidence            444444433333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.15  E-value=1.3e-11  Score=94.07  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=50.4

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCC---ccEEEeccCCCCC
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRS---LTILNLRHYNFRG   86 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~---L~~L~l~~~~l~~   86 (179)
                      ..+.+++++++++.+.+ .+.    ....+...+..+++|+.|++++|.+. ...+..+..+.+   |+.|++++|.+++
T Consensus        49 ~~~~l~~l~l~~~~~~~-~~~----~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          49 PQPSLKELCLSLNETGR-IPR----GLQSLLQGLTKGCGLQELDLSDNALG-PDGCGVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             hCCCceEEeccccccCC-cch----HHHHHHHHHHhcCceeEEEccCCCCC-hhHHHHHHHHhccCcccEEEeeCCccch
Confidence            34557777887776652 110    00001134555667777777777765 223333333333   7777777776652


Q ss_pred             C----CCccccCC-CCccEEEcCCCccC
Q 042092           87 S----IPPSFCNL-TQLMHLDLSSNILS  109 (179)
Q Consensus        87 ~----~~~~l~~l-~~L~~l~l~~n~l~  109 (179)
                      .    ....+..+ ++|+.+++++|.+.
T Consensus       123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116         123 RGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             HHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            1    11223344 56677777766665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=9.6e-12  Score=92.33  Aligned_cols=127  Identities=28%  Similarity=0.291  Sum_probs=76.1

Q ss_pred             ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccc
Q 042092           47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK  126 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~  126 (179)
                      ..|+++|+++|.|+  .+..++.=.+.++.|++++|.+..+  ..+..+++|+.+|+++|.++ .+-++-..+-+++.++
T Consensus       284 q~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh--hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            44666677777664  3445455556667777777766522  22556666777777777665 4444444445555555


Q ss_pred             ccCCccccc---cCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          127 LTCSISSCI---FELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       127 l~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +.++..+.+   .++.+|..||+.+|+|.......-...+|-|+++.+.+|++.+
T Consensus       359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            555544443   3455778888888887662222222337777888888887764

>PLN03210 Resistant to P

Probab=99.09  E-value=1.1e-09  Score=96.54  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=29.1

Q ss_pred             hhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCC
Q 042092           43 LFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN  106 (179)
Q Consensus        43 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n  106 (179)
                      +..+++|++|++++|... ...|..+..+++|+.|++++|.....+|..+ .+++|+.|++++|
T Consensus       653 ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             cccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            444555555555555433 2344445555555555555543222334332 3444444444443

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.09  E-value=1.1e-10  Score=67.64  Aligned_cols=60  Identities=33%  Similarity=0.467  Sum_probs=37.7

Q ss_pred             cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCcc
Q 042092           48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL  108 (179)
Q Consensus        48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l  108 (179)
                      +|++|++++|.++ ...+..|.++++|++|++++|.++...+..|..+++|+++++++|++
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4566666666665 34445566666666666666666655555666666666666666653

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.08  E-value=6.8e-10  Score=93.28  Aligned_cols=117  Identities=19%  Similarity=0.307  Sum_probs=58.3

Q ss_pred             cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCC-C-------
Q 042092           48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSN-L-------  119 (179)
Q Consensus        48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~-l-------  119 (179)
                      .|+.|++++|.+.  .+|..+.  .+|+.|++++|+++ .+|..+.  ++|++|++++|.+. .+|..+.. +       
T Consensus       242 ~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~  313 (754)
T PRK15370        242 TIQEMELSINRIT--ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQS  313 (754)
T ss_pred             cccEEECcCCccC--cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcC
Confidence            3445555555443  2222221  35666666666666 3444432  36677777777665 33332210 0       


Q ss_pred             -----------cccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          120 -----------EQLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       120 -----------~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                                 ++|+.+.+..+    +|..+  .++|+.|++++|.+.. +|..+   .++|+.|++++|++++
T Consensus       314 N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~-LP~~l---p~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        314 NSLTALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITV-LPETL---PPTITTLDVSRNALTN  381 (754)
T ss_pred             CccccCCccccccceeccccCCccccCChhh--cCcccEEECCCCCCCc-CChhh---cCCcCEEECCCCcCCC
Confidence                       11222111111    12111  1467777777777765 55433   3467788888887753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.07  E-value=6.4e-10  Score=93.43  Aligned_cols=118  Identities=20%  Similarity=0.305  Sum_probs=74.6

Q ss_pred             ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcccc-------------------CCCCccEEEcCCCc
Q 042092           47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC-------------------NLTQLMHLDLSSNI  107 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-------------------~l~~L~~l~l~~n~  107 (179)
                      ..|+.|++++|.++  ..|..+.  ++|+.|++++|.++. +|..+.                   ..++|++|++++|.
T Consensus       262 s~L~~L~Ls~N~L~--~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~  336 (754)
T PRK15370        262 SALQSLDLFHNKIS--CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA  336 (754)
T ss_pred             CCCCEEECcCCccC--ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence            35777777777775  2343332  467777777776663 232211                   12467778888887


Q ss_pred             cCCCCCCcCCCCcccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          108 LSGHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       108 l~~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +. .+|..+.  ++|+.+.+.++    +|..+  .+.|++|++++|.+.. +|..+..   +|+.|++++|++++
T Consensus       337 Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~~---sL~~LdLs~N~L~~  402 (754)
T PRK15370        337 LT-SLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTN-LPENLPA---ALQIMQASRNNLVR  402 (754)
T ss_pred             cc-cCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCC-CCHhHHH---HHHHHhhccCCccc
Confidence            76 4555442  45665555432    33333  3589999999999997 6665443   68899999998864

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=5.3e-11  Score=91.86  Aligned_cols=161  Identities=22%  Similarity=0.225  Sum_probs=111.4

Q ss_pred             hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092            6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus         6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      ..|+.+++|+.|+++.|.+..-..+          ..-..+++++.|.++.|.+++.........+++|+.|++.+|...
T Consensus       166 ~i~eqLp~Le~LNls~Nrl~~~~~s----------~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~  235 (505)
T KOG3207|consen  166 KIAEQLPSLENLNLSSNRLSNFISS----------NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII  235 (505)
T ss_pred             HHHHhcccchhcccccccccCCccc----------cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc
Confidence            4467788888888888887632210          122357888899999999987666777778899999999999532


Q ss_pred             CCCCccccCCCCccEEEcCCCccCCC-CCCcCCCCcccccccccCC------cccc-----ccCCCcccEEEcCCCccCC
Q 042092           86 GSIPPSFCNLTQLMHLDLSSNILSGH-IPSSLSNLEQLREKKLTCS------ISSC-----IFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        86 ~~~~~~l~~l~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~~~l~~~------~~~~-----~~~~~~L~~L~l~~n~~~~  153 (179)
                      .+.......+..|+.||+++|.+-+. .-...+.++.|..++++..      .|+.     .-.+++|++|+++.|++.+
T Consensus       236 ~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  236 LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            24444455678899999999987522 2255677788877666532      1221     2346899999999999976


Q ss_pred             chh-hHhhcCCCCCcEEEccCCccc
Q 042092          154 NVE-LYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       154 ~~~-~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      ... ..+.. +++|+.|.+..|.++
T Consensus       316 w~sl~~l~~-l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  316 WRSLNHLRT-LENLKHLRITLNYLN  339 (505)
T ss_pred             ccccchhhc-cchhhhhhccccccc
Confidence            322 23333 778888887777665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.03  E-value=1.8e-11  Score=101.68  Aligned_cols=147  Identities=28%  Similarity=0.322  Sum_probs=81.2

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.|+.|.+.+|.+++..-           +.+..+.+|+.|+|++|.+. ......+.+++.|+.|++++|+++ .+|..
T Consensus       359 ~~Lq~LylanN~Ltd~c~-----------p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCF-----------PVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             HHHHHHHHhcCcccccch-----------hhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence            455566666666664433           35556666666666666664 333444556666666666666666 55555


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc-----ccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS-----SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL  166 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~-----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L  166 (179)
                      +.++..|++|....|.+. ..| .+.+++.|+..+++.+..     ..-..+++|++||+++|.-.. .....+..++++
T Consensus       426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-~d~~~l~~l~~l  502 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV-FDHKTLKVLKSL  502 (1081)
T ss_pred             HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc-cchhhhHHhhhh
Confidence            556666666666666555 445 455555555544443211     111223678888888887433 333333336666


Q ss_pred             cEEEccCC
Q 042092          167 EVLDLSYN  174 (179)
Q Consensus       167 ~~L~l~~n  174 (179)
                      ...++.-+
T Consensus       503 ~~~~i~~~  510 (1081)
T KOG0618|consen  503 SQMDITLN  510 (1081)
T ss_pred             hheecccC
Confidence            66665554

>PLN03210 Resistant to P

Probab=99.02  E-value=2.8e-09  Score=94.08  Aligned_cols=124  Identities=22%  Similarity=0.250  Sum_probs=68.8

Q ss_pred             ccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092           45 FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE  124 (179)
Q Consensus        45 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  124 (179)
                      ...+|+.|++++|.+.  ..+..+..+++|+.++++++.....+| .++.+++|++|++++|.....+|..+..+++|+.
T Consensus       609 ~~~~L~~L~L~~s~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        609 RPENLVKLQMQGSKLE--KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             CccCCcEEECcCcccc--ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            3456667777777664  344445666777777776654332444 3556667777777766544456666666666666


Q ss_pred             ccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092          125 KKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL  176 (179)
Q Consensus       125 ~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  176 (179)
                      +++.+     .+|..+ .+++|+.|++++|.....+|.    ...+|+.|+++.|.+
T Consensus       686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i  737 (1153)
T PLN03210        686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAI  737 (1153)
T ss_pred             EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcc
Confidence            55543     233322 345566666666544332332    133455555555543

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.99  E-value=2.9e-11  Score=92.33  Aligned_cols=127  Identities=23%  Similarity=0.325  Sum_probs=106.3

Q ss_pred             ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEc-CCCccCCCCCCcCCCCccccc-
Q 042092           47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDL-SSNILSGHIPSSLSNLEQLRE-  124 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l-~~n~l~~~~~~~~~~l~~L~~-  124 (179)
                      +..+.+.|..|.|+ .+.+.+|..+++|+.||+++|.|+.+.|..|..++++-.+.+ ++|+|++..-+.|+.+..++. 
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            45678999999998 688999999999999999999999999999999988776655 559998665677888888776 


Q ss_pred             ----ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCc
Q 042092          125 ----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNK  175 (179)
Q Consensus       125 ----~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  175 (179)
                          +.+.....+.+..+++++.|.+.+|.+.. +++..+..+.+++.+.+..|+
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCc
Confidence                34455667788899999999999999987 777556668888888888877

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.98  E-value=6.8e-10  Score=64.26  Aligned_cols=61  Identities=23%  Similarity=0.266  Sum_probs=54.0

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCC
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNF   84 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l   84 (179)
                      ++|++|++++|.+....+           ..+..+++|++|++++|.++ ...+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~-----------~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPP-----------DSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECT-----------TTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCH-----------HHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999995444           68899999999999999997 56778899999999999999975

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.97  E-value=2.9e-09  Score=89.48  Aligned_cols=76  Identities=20%  Similarity=0.209  Sum_probs=40.3

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccccccc-----------------CCCCcc
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFS-----------------QFRSLT   75 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-----------------~l~~L~   75 (179)
                      +++.|++++|.++ .+|           .   ..+.|++|++++|.++  ..|....                 -.++|+
T Consensus       223 ~L~~L~L~~N~Lt-~LP-----------~---lp~~Lk~LdLs~N~Lt--sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~  285 (788)
T PRK15387        223 HITTLVIPDNNLT-SLP-----------A---LPPELRTLEVSGNQLT--SLPVLPPGLLELSIFSNPLTHLPALPSGLC  285 (788)
T ss_pred             CCCEEEccCCcCC-CCC-----------C---CCCCCcEEEecCCccC--cccCcccccceeeccCCchhhhhhchhhcC
Confidence            5677777777776 455           2   1356666777776665  2222110                 012334


Q ss_pred             EEEeccCCCCCCCCccccCCCCccEEEcCCCccC
Q 042092           76 ILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        76 ~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~  109 (179)
                      .|++++|+++ .+|.   ..++|+.|++++|.+.
T Consensus       286 ~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        286 KLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA  315 (788)
T ss_pred             EEECcCCccc-cccc---cccccceeECCCCccc
Confidence            4444555444 2232   1256777777777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.94  E-value=6.1e-10  Score=87.66  Aligned_cols=148  Identities=29%  Similarity=0.421  Sum_probs=86.9

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccc-cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFIL-HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP   89 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   89 (179)
                      ...++.+++.+|.++ .++           ....... +|+.|++++|.+.  ..+..+..++.|+.|++++|++. ..|
T Consensus       115 ~~~l~~L~l~~n~i~-~i~-----------~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~  179 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIP-----------PLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLP  179 (394)
T ss_pred             ccceeEEecCCcccc-cCc-----------cccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhh
Confidence            345666777777666 444           3344442 5666666666664  23333456666666666666665 334


Q ss_pred             ccccCCCCccEEEcCCCccCCCCCCc-----------------------CCCCcccccccccC----CccccccCCCccc
Q 042092           90 PSFCNLTQLMHLDLSSNILSGHIPSS-----------------------LSNLEQLREKKLTC----SISSCIFELVNLT  142 (179)
Q Consensus        90 ~~l~~l~~L~~l~l~~n~l~~~~~~~-----------------------~~~l~~L~~~~l~~----~~~~~~~~~~~L~  142 (179)
                      ......+.|+.+++++|++. .+|..                       +..+.++....+..    ..+..++.++.++
T Consensus       180 ~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~  258 (394)
T COG4886         180 KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE  258 (394)
T ss_pred             hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccc
Confidence            43334555666666666655 33332                       22222222222222    1246667778899


Q ss_pred             EEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       143 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      .|++++|.++. ++.  .....+++.|++++|.++
T Consensus       259 ~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         259 TLDLSNNQISS-ISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             eeccccccccc-ccc--ccccCccCEEeccCcccc
Confidence            99999999988 444  344889999999998765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.85  E-value=2.1e-09  Score=84.65  Aligned_cols=118  Identities=30%  Similarity=0.380  Sum_probs=79.9

Q ss_pred             eeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCC-CccEEEeccCCCCCCCCccccC
Q 042092           16 NRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFR-SLTILNLRHYNFRGSIPPSFCN   94 (179)
Q Consensus        16 ~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~   94 (179)
                      .++++.+.+.....            .+..++.++.+++.+|.++  ..+....... +|+.|++++|.+. ..|..+..
T Consensus        97 ~l~~~~~~~~~~~~------------~~~~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~  161 (394)
T COG4886          97 SLDLNLNRLRSNIS------------ELLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN  161 (394)
T ss_pred             eeeccccccccCch------------hhhcccceeEEecCCcccc--cCccccccchhhcccccccccchh-hhhhhhhc
Confidence            46677776642222            4556688999999999997  3444445553 9999999999998 66677889


Q ss_pred             CCCccEEEcCCCccCCCCCCcCCCCcccccccccCC----ccccccCCCcccEEEcCCC
Q 042092           95 LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLTKVSLSSN  149 (179)
Q Consensus        95 l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n  149 (179)
                      ++.|+.|+++.|.+. .+|......+.|+...+++.    +|........|+++.+++|
T Consensus       162 l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         162 LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             cccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence            999999999999998 55654445566665545442    2222222233555555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.77  E-value=3e-10  Score=90.49  Aligned_cols=146  Identities=25%  Similarity=0.343  Sum_probs=122.0

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ..-...|++.|.+. ++|           ..+..+..|+.+.+..|.+-  ..+.++..+..|.++|++.|+++ .+|..
T Consensus        75 tdt~~aDlsrNR~~-elp-----------~~~~~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~NqlS-~lp~~  139 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELP-----------EEACAFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSNQLS-HLPDG  139 (722)
T ss_pred             cchhhhhccccccc-cCc-----------hHHHHHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccchhh-cCChh
Confidence            34456788888887 788           77888888999999999984  67888999999999999999999 88888


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE  167 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  167 (179)
                      ++.++ |+.+-+++|+++ .+|+.++....|..+.++.    .+|..++.+.+|+.|.+..|++.. +|.++.. + .|.
T Consensus       140 lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~~-L-pLi  214 (722)
T KOG0532|consen  140 LCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-L-PLI  214 (722)
T ss_pred             hhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-C-cee
Confidence            88877 788889999998 8898888777787766664    567788889999999999999998 7776652 4 577


Q ss_pred             EEEccCCccc
Q 042092          168 VLDLSYNKLS  177 (179)
Q Consensus       168 ~L~l~~n~l~  177 (179)
                      .||++.|+++
T Consensus       215 ~lDfScNkis  224 (722)
T KOG0532|consen  215 RLDFSCNKIS  224 (722)
T ss_pred             eeecccCcee
Confidence            9999999885

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=7.6e-10  Score=90.58  Aligned_cols=122  Identities=26%  Similarity=0.349  Sum_probs=79.5

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc-c
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP-S   91 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~   91 (179)
                      .|...++++|.+. .+.           .++..++.++.|+|+.|+++  ... .+..+++|+.||+++|.+... |. .
T Consensus       165 ~L~~a~fsyN~L~-~mD-----------~SLqll~ale~LnLshNk~~--~v~-~Lr~l~~LkhLDlsyN~L~~v-p~l~  228 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMD-----------ESLQLLPALESLNLSHNKFT--KVD-NLRRLPKLKHLDLSYNCLRHV-PQLS  228 (1096)
T ss_pred             hHhhhhcchhhHH-hHH-----------HHHHHHHHhhhhccchhhhh--hhH-HHHhcccccccccccchhccc-cccc
Confidence            4556677777776 455           68888899999999999986  344 577889999999999988733 32 2


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccc------cCCCcccEEEcCCCccCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCI------FELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~------~~~~~L~~L~l~~n~~~~  153 (179)
                      ...+ .|+.|.+++|.++.  ...+.++.+|+.++++.++...+      +.+..|+.|.+.+|.+-.
T Consensus       229 ~~gc-~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  229 MVGC-KLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhh-hheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            2233 38889999998762  23455555555555554433322      223445666666665544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=7.9e-09  Score=80.08  Aligned_cols=159  Identities=21%  Similarity=0.101  Sum_probs=102.3

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP   89 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   89 (179)
                      .++.++.|||+.|-+....+         +......+++|+.|+++.|.+.-......-..+++|+.|.++.|.++...-
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~---------v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V  214 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFP---------VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDV  214 (505)
T ss_pred             hCCcceeecchhhhHHhHHH---------HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHH
Confidence            35778888998888775444         123345678899999999987411111112356888889999998874322


Q ss_pred             cc-ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc------cccccCCCcccEEEcCCCccCCc-hhh----
Q 042092           90 PS-FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI------SSCIFELVNLTKVSLSSNNLSSN-VEL----  157 (179)
Q Consensus        90 ~~-l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~------~~~~~~~~~L~~L~l~~n~~~~~-~~~----  157 (179)
                      .. +..+|+++.|++..|.....-.....-+..|+.+++.++.      ....+.++.|+.|.++.+.+.+. .|.    
T Consensus       215 ~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  215 QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch
Confidence            22 3457899999998885322222223334445555555432      23456788999999999988772 122    


Q ss_pred             HhhcCCCCCcEEEccCCccc
Q 042092          158 YMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       158 ~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +....+++|+.|+++.|++.
T Consensus       295 ~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  295 DKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhcccccceeeecccCccc
Confidence            12345889999999999883

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.50  E-value=3.5e-08  Score=74.59  Aligned_cols=42  Identities=24%  Similarity=0.227  Sum_probs=18.1

Q ss_pred             cCCCcccEEEcCCCccCCchh----hHhhcCCCCCcEEEccCCccc
Q 042092          136 FELVNLTKVSLSSNNLSSNVE----LYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       136 ~~~~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      ..|+.|+++++++|.+.....    ..+....++|+++++.+|.|+
T Consensus       238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            334445555555555444221    122233444555555554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.49  E-value=2.4e-08  Score=74.60  Aligned_cols=106  Identities=27%  Similarity=0.296  Sum_probs=83.1

Q ss_pred             ccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccC----CCcc
Q 042092           66 YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFE----LVNL  141 (179)
Q Consensus        66 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~----~~~L  141 (179)
                      ..+..|.-|+.+|+++|.++ .+.++..-.|.++.++++.|.+. .+ +.++.+++|+++.++++....+..    +-+.
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI  354 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence            34567888999999999999 66778888899999999999997 32 337888888888888876655543    4578


Q ss_pred             cEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          142 TKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       142 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      ..|.+++|.+.+ .. .+. ++-+|..||+++|+|.
T Consensus       355 KtL~La~N~iE~-LS-GL~-KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  355 KTLKLAQNKIET-LS-GLR-KLYSLVNLDLSSNQIE  387 (490)
T ss_pred             eeeehhhhhHhh-hh-hhH-hhhhheeccccccchh
Confidence            899999998876 22 223 3888999999999885

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.46  E-value=4e-09  Score=69.96  Aligned_cols=105  Identities=21%  Similarity=0.309  Sum_probs=78.6

Q ss_pred             chhhhcccCceeeecccccCCCCCCcchhhhheecccchh---ccccceEEEeeCccccCCccccccc-CCCCccEEEec
Q 042092            5 LSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLF---FILHSQNLNLCGNDFNYSKISYGFS-QFRSLTILNLR   80 (179)
Q Consensus         5 ~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~l~   80 (179)
                      +..|+....+-.+||+.|++- .++           +.+.   ....|+..++++|.+.  .+|+.|. ..+..+++++.
T Consensus        20 VercedakE~h~ldLssc~lm-~i~-----------davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~   85 (177)
T KOG4579|consen   20 VERCEDAKELHFLDLSSCQLM-YIA-----------DAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLA   85 (177)
T ss_pred             HHhhHHHHHhhhcccccchhh-HHH-----------HHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcc
Confidence            456777788888899988875 455           4443   3456777899999995  4555554 56788999999


Q ss_pred             cCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccc
Q 042092           81 HYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK  125 (179)
Q Consensus        81 ~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~  125 (179)
                      +|.++ ..|..+..++.|+.++++.|.+. ..|..+.++.++..+
T Consensus        86 ~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   86 NNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             hhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            99999 66777999999999999999987 666666555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.35  E-value=4.6e-08  Score=73.94  Aligned_cols=136  Identities=18%  Similarity=0.144  Sum_probs=90.6

Q ss_pred             chhccccceEEEeeCccccCCcccc----cccCCCCccEEEeccCCCCCCCCcc-------------ccCCCCccEEEcC
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISY----GFSQFRSLTILNLRHYNFRGSIPPS-------------FCNLTQLMHLDLS  104 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~-------------l~~l~~L~~l~l~  104 (179)
                      ++..+++|+.++||.|.+. ...++    .+..+..|+.|++.+|.+...-...             .+.-+.|+.+.+.
T Consensus        87 aL~~~~~L~~ldLSDNA~G-~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFG-PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHhcCCceeEeeccccccC-ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            4555678999999999886 33332    3456788999999999887322222             2234788999999


Q ss_pred             CCccCCC----CCCcCCCCccccccccc--CCcc-------ccccCCCcccEEEcCCCccCCchhhHh---hcCCCCCcE
Q 042092          105 SNILSGH----IPSSLSNLEQLREKKLT--CSIS-------SCIFELVNLTKVSLSSNNLSSNVELYM---FTKLKSLEV  168 (179)
Q Consensus       105 ~n~l~~~----~~~~~~~l~~L~~~~l~--~~~~-------~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~l~~L~~  168 (179)
                      +|++...    +...++.++.|+...+.  +..+       ..+..++.|++||+.+|.|+......+   ...|++|++
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            9988532    22345555566554443  2222       235678999999999999987433222   334888999


Q ss_pred             EEccCCcccc
Q 042092          169 LDLSYNKLSL  178 (179)
Q Consensus       169 L~l~~n~l~~  178 (179)
                      +++++|.+..
T Consensus       246 l~l~dcll~~  255 (382)
T KOG1909|consen  246 LNLGDCLLEN  255 (382)
T ss_pred             eccccccccc
Confidence            9999998753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1e-08  Score=76.22  Aligned_cols=151  Identities=21%  Similarity=0.223  Sum_probs=100.5

Q ss_pred             ccCceeeecccccCCC-CCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCC-CCCC-
Q 042092           11 NCAFMNRLLHYSCLSN-SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYN-FRGS-   87 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~-l~~~-   87 (179)
                      ..+|+.|||++..++. .+.           .-+..|..|+.+.+.++.+. +.....+.+-..|+.++++++. ++.. 
T Consensus       184 rsRlq~lDLS~s~it~stl~-----------~iLs~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~  251 (419)
T KOG2120|consen  184 RSRLQHLDLSNSVITVSTLH-----------GILSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENA  251 (419)
T ss_pred             hhhhHHhhcchhheeHHHHH-----------HHHHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhH
Confidence            4568999999988873 233           45677899999999999997 4455567888999999999975 4421 


Q ss_pred             CCccccCCCCccEEEcCCCccCCC-CCCcCCCC-cccccccccCC--------ccccccCCCcccEEEcCCCccCCch-h
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGH-IPSSLSNL-EQLREKKLTCS--------ISSCIFELVNLTKVSLSSNNLSSNV-E  156 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~-~~~~~~~l-~~L~~~~l~~~--------~~~~~~~~~~L~~L~l~~n~~~~~~-~  156 (179)
                      ..-.+..+..|+.|+++|+.+... +.-.+... .+|..++++|.        +..-..++|.|.+||+++|...... .
T Consensus       252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~  331 (419)
T KOG2120|consen  252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF  331 (419)
T ss_pred             HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence            112356789999999999987422 11111111 13444555542        2223357889999999988654433 3


Q ss_pred             hHhhcCCCCCcEEEccCC
Q 042092          157 LYMFTKLKSLEVLDLSYN  174 (179)
Q Consensus       157 ~~~~~~l~~L~~L~l~~n  174 (179)
                      ..+++ ++-|++|.++.|
T Consensus       332 ~~~~k-f~~L~~lSlsRC  348 (419)
T KOG2120|consen  332 QEFFK-FNYLQHLSLSRC  348 (419)
T ss_pred             HHHHh-cchheeeehhhh
Confidence            34444 888888887765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.26  E-value=1.3e-07  Score=75.08  Aligned_cols=150  Identities=28%  Similarity=0.234  Sum_probs=98.1

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      ....+++.+++.+|.+.. +.           ..+..+.+|++|++++|.|+ . .. .+..++.|+.|++.+|.+... 
T Consensus        92 ~~~~~l~~l~l~~n~i~~-i~-----------~~l~~~~~L~~L~ls~N~I~-~-i~-~l~~l~~L~~L~l~~N~i~~~-  155 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEK-IE-----------NLLSSLVNLQVLDLSFNKIT-K-LE-GLSTLTLLKELNLSGNLISDI-  155 (414)
T ss_pred             ccccceeeeeccccchhh-cc-----------cchhhhhcchheeccccccc-c-cc-chhhccchhhheeccCcchhc-
Confidence            456788899999999883 43           23778899999999999996 2 22 256777899999999988743 


Q ss_pred             CccccCCCCccEEEcCCCccCCCCCCc-CCCCcccccccccC----------------------CccccccCCC---c--
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIPSS-LSNLEQLREKKLTC----------------------SISSCIFELV---N--  140 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~-~~~l~~L~~~~l~~----------------------~~~~~~~~~~---~--  140 (179)
                       ..+..+..|+.+++++|.+...-+ . ...+.+++...+.+                      +....+..+.   .  
T Consensus       156 -~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~  233 (414)
T KOG0531|consen  156 -SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLH  233 (414)
T ss_pred             -cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHH
Confidence             344557889999999998874333 1 34444444422221                      1111122222   2  


Q ss_pred             ccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          141 LTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       141 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      |+.+++++|++.. .+. ....+..+..+++..|.++.
T Consensus       234 L~~l~l~~n~i~~-~~~-~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  234 LRELYLSGNRISR-SPE-GLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             HHHHhcccCcccc-ccc-cccccccccccchhhccccc
Confidence            6788888888876 221 23347777888888877653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.25  E-value=2e-06  Score=46.10  Aligned_cols=38  Identities=34%  Similarity=0.438  Sum_probs=30.7

Q ss_pred             CcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          139 VNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       139 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      ++|++|++++|.|++ ++..+.. +++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~-l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSN-LPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTT-CTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc-cCchHhC-CCCCCEEEecCCCCCC
Confidence            478999999999998 7665555 9999999999999863

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=9.9e-07  Score=65.15  Aligned_cols=167  Identities=19%  Similarity=0.123  Sum_probs=103.9

Q ss_pred             cccCceeeecccccCCCCCCcchhhhhee---------------------------cccchhccccceEEEeeCccccCC
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFA---------------------------LNESLFFILHSQNLNLCGNDFNYS   62 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~---------------------------~~~~~~~l~~L~~L~l~~n~i~~~   62 (179)
                      ....++.++||+|.+...-..|.+..+..                           .-+.+..|++++.+++|.|.|. .
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg-~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG-S  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC-c
Confidence            35667788888888765443332222221                           1135677899999999999886 4


Q ss_pred             ccccc----ccCCCCccEEEeccCCCCCCCCcccc-------------CCCCccEEEcCCCccCCCCC-----CcCCCCc
Q 042092           63 KISYG----FSQFRSLTILNLRHYNFRGSIPPSFC-------------NLTQLMHLDLSSNILSGHIP-----SSLSNLE  120 (179)
Q Consensus        63 ~~~~~----~~~l~~L~~L~l~~~~l~~~~~~~l~-------------~l~~L~~l~l~~n~l~~~~~-----~~~~~l~  120 (179)
                      ..+..    +++-+.|..|.+++|.+..+....++             .-|.|+.+.+.+|++. ..+     ..++...
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence            44443    34557888999999987743332222             2378999999999885 222     1233344


Q ss_pred             cccccccc--CCcccc--------ccCCCcccEEEcCCCccCCchhhH---hhcCCCCCcEEEccCCcccc
Q 042092          121 QLREKKLT--CSISSC--------IFELVNLTKVSLSSNNLSSNVELY---MFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       121 ~L~~~~l~--~~~~~~--------~~~~~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +|+..++.  +.-|..        +..+.+|+.||+.+|.++-.....   ..+.|+.|++|++..|-++.
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            45544443  344442        245778999999999887643322   22347788888888887653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.20  E-value=8e-07  Score=76.28  Aligned_cols=80  Identities=26%  Similarity=0.337  Sum_probs=42.6

Q ss_pred             hhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092           43 LFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL  122 (179)
Q Consensus        43 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L  122 (179)
                      |..++.|+.||+++|.-. ...|..++.+-+|++|+++++.+. .+|..+.++..|.+|++..+.....+|.....+.+|
T Consensus       567 f~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence            444555666666654432 345555555666666666666555 555555555556666555554332334444445555


Q ss_pred             cc
Q 042092          123 RE  124 (179)
Q Consensus       123 ~~  124 (179)
                      ++
T Consensus       645 r~  646 (889)
T KOG4658|consen  645 RV  646 (889)
T ss_pred             cE
Confidence            54

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.16  E-value=2.7e-07  Score=73.34  Aligned_cols=126  Identities=23%  Similarity=0.289  Sum_probs=91.7

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      ...++.+++..|.+.. +-           ..+..+..++.+++.+|.|.  .+...+..+++|++|++++|.|+..  .
T Consensus        71 l~~l~~l~l~~n~i~~-~~-----------~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i--~  134 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-IL-----------NHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKL--E  134 (414)
T ss_pred             hHhHHhhccchhhhhh-hh-----------cccccccceeeeeccccchh--hcccchhhhhcchheeccccccccc--c
Confidence            4556677788888774 22           35888999999999999996  3343367899999999999999865  3


Q ss_pred             cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcccc-----ccCCCcccEEEcCCCccCCc
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSC-----IFELVNLTKVSLSSNNLSSN  154 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~-----~~~~~~L~~L~l~~n~~~~~  154 (179)
                      .+..++.|+.|++.+|.+..  ...+..+..|+...+.+.....     ...+..++.+.+++|.+...
T Consensus       135 ~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  135 GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             chhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            34567779999999999972  2334446666665555433222     35567888899999988763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.14  E-value=2.1e-06  Score=73.78  Aligned_cols=104  Identities=29%  Similarity=0.315  Sum_probs=83.1

Q ss_pred             ccccceEEEeeCcc--ccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092           45 FILHSQNLNLCGND--FNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL  122 (179)
Q Consensus        45 ~l~~L~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L  122 (179)
                      .++.+++|-+..|.  +. ......|..++.|++||+++|.-...+|..++.+.+|++|+++++.+. .+|..++++..|
T Consensus       543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            34578888888885  43 344555788999999999998765689999999999999999999998 889999999999


Q ss_pred             ccccccC-----CccccccCCCcccEEEcCCCc
Q 042092          123 REKKLTC-----SISSCIFELVNLTKVSLSSNN  150 (179)
Q Consensus       123 ~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~  150 (179)
                      .++++..     .++.....+++|++|.+....
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccc
Confidence            9877753     233444558899999887776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=3.6e-06  Score=45.13  Aligned_cols=36  Identities=36%  Similarity=0.593  Sum_probs=17.5

Q ss_pred             CccEEEeccCCCCCCCCccccCCCCccEEEcCCCccC
Q 042092           73 SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        73 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~  109 (179)
                      +|++|++++|.++ .+|+.++++++|+++++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33434555555555555555544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.09  E-value=4.2e-06  Score=59.16  Aligned_cols=60  Identities=20%  Similarity=0.171  Sum_probs=42.2

Q ss_pred             ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccC
Q 042092           47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~  109 (179)
                      .....+|+++|++-   .-..|..++.|++|.+++|.|+.+.|..-..+++|+.|.+.+|.+.
T Consensus        42 d~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccceecccccchh---hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            44567788888773   2234677888888888888888555554445677888888888775

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.07  E-value=9.5e-07  Score=74.04  Aligned_cols=61  Identities=18%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             cccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCcc
Q 042092           46 ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL  108 (179)
Q Consensus        46 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l  108 (179)
                      +|.|++|.+++-.+..+.+...+.++++|..||++++.++..  ..++.+.+||.|.+.+=.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~  207 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEF  207 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCC
Confidence            455666666665553233334445556666666666655522  3445555555555444333

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=2.1e-07  Score=61.96  Aligned_cols=103  Identities=22%  Similarity=0.315  Sum_probs=69.1

Q ss_pred             ccceEEEeeCccccCCcccc---cccCCCCccEEEeccCCCCCCCCcccc-CCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092           47 LHSQNLNLCGNDFNYSKISY---GFSQFRSLTILNLRHYNFRGSIPPSFC-NLTQLMHLDLSSNILSGHIPSSLSNLEQL  122 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~l~l~~n~l~~~~~~~~~~l~~L  122 (179)
                      ..+..++++.|.+.  .++.   -+.+...|+..++++|.+. ..|+.|. ..+.++++++++|.+. .+|..+..++.|
T Consensus        27 kE~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aL  102 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPAL  102 (177)
T ss_pred             HHhhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHh
Confidence            45667889999774  2332   3455677888899999998 5566654 5678999999999998 567667777666


Q ss_pred             ccccccC----CccccccCCCcccEEEcCCCccCC
Q 042092          123 REKKLTC----SISSCIFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus       123 ~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~  153 (179)
                      +.+++.-    ..|+.+..+.++..|+...|....
T Consensus       103 r~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  103 RSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             hhcccccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence            6655442    234444455566666666665554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=2.9e-06  Score=63.51  Aligned_cols=156  Identities=22%  Similarity=0.169  Sum_probs=97.6

Q ss_pred             cccCceeeecccccCCCC--CCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092           10 RNCAFMNRLLHYSCLSNS--FPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ...+++.+||.+|.++.+  +.           ..+..+++|+.|+++.|.+. ..+...-....+|+.|-+.+..+...
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~-----------~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~lVLNgT~L~w~  136 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIG-----------AILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVLVLNGTGLSWT  136 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHH-----------HHHhcCccceEeeccCCcCC-CccccCcccccceEEEEEcCCCCChh
Confidence            346778899999999852  33           45677899999999999886 22222114667899999988887644


Q ss_pred             CC-ccccCCCCccEEEcCCCccC-----CCCCCcCC-------CCccccc-----ccccCC------------------c
Q 042092           88 IP-PSFCNLTQLMHLDLSSNILS-----GHIPSSLS-------NLEQLRE-----KKLTCS------------------I  131 (179)
Q Consensus        88 ~~-~~l~~l~~L~~l~l~~n~l~-----~~~~~~~~-------~l~~L~~-----~~l~~~------------------~  131 (179)
                      .. ..+..+|.++.+.++.|.+.     ....+.+.       ..+.+..     +++...                  .
T Consensus       137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~  216 (418)
T KOG2982|consen  137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS  216 (418)
T ss_pred             hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh
Confidence            33 34567888899988888442     11111110       1111100     111110                  1


Q ss_pred             cccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          132 SSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       132 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      .+....++.+.-|.++.|++-+.-.-+....++.|..|.++.+++.
T Consensus       217 ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  217 EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            1123346677788888888877443344555999999999999875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=4.8e-06  Score=62.33  Aligned_cols=154  Identities=14%  Similarity=0.169  Sum_probs=100.1

Q ss_pred             hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092            6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus         6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      +.|.++++++.|+++.|++...+.           .-.....+|+.+-+.+..+.+......+..++.++.|.++.|.+.
T Consensus        91 ~ile~lP~l~~LNls~N~L~s~I~-----------~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen   91 AILEQLPALTTLNLSCNSLSSDIK-----------SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             HHHhcCccceEeeccCCcCCCccc-----------cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            457889999999999999986554           112467789999999998887667777788999999999888432


Q ss_pred             C-----CCCcccc------------------------CCCCccEEEcCCCccCCC-CCCcCCCCcccccccccC------
Q 042092           86 G-----SIPPSFC------------------------NLTQLMHLDLSSNILSGH-IPSSLSNLEQLREKKLTC------  129 (179)
Q Consensus        86 ~-----~~~~~l~------------------------~l~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~~~l~~------  129 (179)
                      .     ...+.+.                        -+|++..+.+..|.+... .......++.+..+++..      
T Consensus       160 q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idsw  239 (418)
T KOG2982|consen  160 QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSW  239 (418)
T ss_pred             hhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccH
Confidence            1     1111111                        135666666666655422 122334444444444443      


Q ss_pred             CccccccCCCcccEEEcCCCccCCchhh-----HhhcCCCCCcEEE
Q 042092          130 SISSCIFELVNLTKVSLSSNNLSSNVEL-----YMFTKLKSLEVLD  170 (179)
Q Consensus       130 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~~~~l~~L~~L~  170 (179)
                      ...+.+.++++|+-|.++.+.+.+....     -+.+.+++++.|+
T Consensus       240 asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  240 ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            3445667899999999999998774321     1233477777776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=3.4e-06  Score=70.76  Aligned_cols=130  Identities=19%  Similarity=0.209  Sum_probs=91.4

Q ss_pred             ccceEEEeeCccccCCcccccc-cCCCCccEEEeccCCCCCC-CCccccCCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092           47 LHSQNLNLCGNDFNYSKISYGF-SQFRSLTILNLRHYNFRGS-IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE  124 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  124 (179)
                      .+|++|+++|...-...-+..+ ..+|+|+.|.+++..+... ....+..+++|..||++++.++..  ..+..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            6788999988754212222233 4679999999999876522 223456789999999999998733  66778888887


Q ss_pred             ccccC------CccccccCCCcccEEEcCCCccCCch--hhH---hhcCCCCCcEEEccCCcccc
Q 042092          125 KKLTC------SISSCIFELVNLTKVSLSSNNLSSNV--ELY---MFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       125 ~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~---~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +.+..      .....+..+++|++||+|+.......  ...   -...+|+|+.||.|+..+.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            55442      33345678899999999998876522  221   13458899999999887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.77  E-value=9.5e-07  Score=73.01  Aligned_cols=124  Identities=30%  Similarity=0.273  Sum_probs=92.7

Q ss_pred             cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092           48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL  127 (179)
Q Consensus        48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l  127 (179)
                      .|...++++|.+.  .+..++.-++.++.|++++|+++.. . .+..++.|++||+++|.+. .+|..-..-.+|+.+++
T Consensus       165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence            3456678888875  5677778889999999999999844 2 7788999999999999997 66653333334777777


Q ss_pred             cCCccccc---cCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092          128 TCSISSCI---FELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL  176 (179)
Q Consensus       128 ~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  176 (179)
                      .++...++   .++.+|+.||++.|-+.+.-.......+..|+.|.+.+|++
T Consensus       240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            77655544   45678899999999888744333334477888899999886

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=5.1e-05  Score=53.82  Aligned_cols=101  Identities=18%  Similarity=0.093  Sum_probs=69.3

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC--c
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP--P   90 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~   90 (179)
                      ....+||++|.+. .++            .+..+++|.+|.+.+|.|+ ...+..-.-++.|+.|.+.+|.+. .+.  .
T Consensus        43 ~~d~iDLtdNdl~-~l~------------~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~  107 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD------------NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLD  107 (233)
T ss_pred             ccceecccccchh-hcc------------cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcc
Confidence            4566788888876 333            5777888999999999988 455554455678889999998876 222  2


Q ss_pred             cccCCCCccEEEcCCCccCCC---CCCcCCCCccccccccc
Q 042092           91 SFCNLTQLMHLDLSSNILSGH---IPSSLSNLEQLREKKLT  128 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~---~~~~~~~l~~L~~~~l~  128 (179)
                      .+..+|.|++|.+-+|.+...   ....+..+++|+.+.++
T Consensus       108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            355678889998888887522   12345556666665554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=1.4e-06  Score=64.62  Aligned_cols=94  Identities=18%  Similarity=0.084  Sum_probs=76.6

Q ss_pred             ccchhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccC
Q 042092            3 LVLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY   82 (179)
Q Consensus         3 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~   82 (179)
                      +....|+.+..+++|+..+|++.+ +.            ....|+.|+.|.|+-|+|+ ..  ..+..|++|+.|++..|
T Consensus        10 ~~raK~sdl~~vkKLNcwg~~L~D-Is------------ic~kMp~lEVLsLSvNkIs-sL--~pl~rCtrLkElYLRkN   73 (388)
T KOG2123|consen   10 YIRAKCSDLENVKKLNCWGCGLDD-IS------------ICEKMPLLEVLSLSVNKIS-SL--APLQRCTRLKELYLRKN   73 (388)
T ss_pred             HHHHHhhHHHHhhhhcccCCCccH-HH------------HHHhcccceeEEeeccccc-cc--hhHHHHHHHHHHHHHhc
Confidence            345678889999999999999984 33            4677999999999999997 33  33789999999999999


Q ss_pred             CCCCCCCc--cccCCCCccEEEcCCCccCCCCC
Q 042092           83 NFRGSIPP--SFCNLTQLMHLDLSSNILSGHIP  113 (179)
Q Consensus        83 ~l~~~~~~--~l~~l~~L~~l~l~~n~l~~~~~  113 (179)
                      .|.+. .+  .+.++++|+.|++..|.+.+.-+
T Consensus        74 ~I~sl-dEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   74 CIESL-DELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             ccccH-HHHHHHhcCchhhhHhhccCCcccccc
Confidence            98843 33  46789999999999999875433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.63  E-value=4.2e-05  Score=56.01  Aligned_cols=106  Identities=23%  Similarity=0.248  Sum_probs=63.7

Q ss_pred             hccccceEEEeeCccccCCcccccccCCCCccEEEeccC--CCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcc
Q 042092           44 FFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY--NFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ  121 (179)
Q Consensus        44 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~--~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~  121 (179)
                      ..+..++.+.+.+..++ .  -..+..+++|+.|.++.|  ++..-.+.....+++|+++++++|++..  +..+..++.
T Consensus        40 d~~~~le~ls~~n~glt-t--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~  114 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLT-T--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE  114 (260)
T ss_pred             ccccchhhhhhhcccee-e--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence            34455666667777664 1  223567888999999998  5554445445566899999999998862  444444443


Q ss_pred             cccccccCCccccccCCCcccEEEcCCCccCCc--hhhHhhcCCCCCcEEE
Q 042092          122 LREKKLTCSISSCIFELVNLTKVSLSSNNLSSN--VELYMFTKLKSLEVLD  170 (179)
Q Consensus       122 L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~  170 (179)
                      +                ++|..|++..|..+..  .....+.-+++|++||
T Consensus       115 l----------------~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  115 L----------------ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             h----------------cchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            3                3455566665554431  1223444455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=4.3e-05  Score=56.01  Aligned_cols=69  Identities=14%  Similarity=0.075  Sum_probs=36.4

Q ss_pred             hhhhcccCceeeecccc--cCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCC
Q 042092            6 SECARNCAFMNRLLHYS--CLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYN   83 (179)
Q Consensus         6 ~~~~~~~~l~~l~l~~n--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~   83 (179)
                      ..++.++.|+.|.++.|  ++.+.++           .....+++|+++++++|++..-..-.....+.+|..|++..|.
T Consensus        59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~-----------vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDNYRRVSGGLE-----------VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             ccCCCcchhhhhcccCCcccccccce-----------ehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence            34455566666666666  4444444           3444456666666666665421112223445556666666665


Q ss_pred             CC
Q 042092           84 FR   85 (179)
Q Consensus        84 l~   85 (179)
                      .+
T Consensus       128 ~~  129 (260)
T KOG2739|consen  128 VT  129 (260)
T ss_pred             cc
Confidence            44

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=1.8e-06  Score=64.55  Aligned_cols=12  Identities=50%  Similarity=0.755  Sum_probs=6.8

Q ss_pred             CCCccEEEcCCC
Q 042092           95 LTQLMHLDLSSN  106 (179)
Q Consensus        95 l~~L~~l~l~~n  106 (179)
                      ++++..||++++
T Consensus       312 cp~l~~LDLSD~  323 (419)
T KOG2120|consen  312 CPNLVHLDLSDS  323 (419)
T ss_pred             CCceeeeccccc
Confidence            455556665554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.22  E-value=0.0027  Score=50.30  Aligned_cols=72  Identities=13%  Similarity=0.138  Sum_probs=40.3

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccC-CCCCCCCc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY-NFRGSIPP   90 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~   90 (179)
                      ..++.|++++|.++ .+|           . +  -..|++|.+++|.-- ...|..+  .++|+.|++++| .+. .+|+
T Consensus        52 ~~l~~L~Is~c~L~-sLP-----------~-L--P~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLP-----------V-L--PNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             cCCCEEEeCCCCCc-ccC-----------C-C--CCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-cccc
Confidence            56777888887666 444           2 1  234777777765332 2334322  247777787777 443 3443


Q ss_pred             cccCCCCccEEEcCCCcc
Q 042092           91 SFCNLTQLMHLDLSSNIL  108 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l  108 (179)
                            +|+.|++..+.+
T Consensus       113 ------sLe~L~L~~n~~  124 (426)
T PRK15386        113 ------SVRSLEIKGSAT  124 (426)
T ss_pred             ------ccceEEeCCCCC
Confidence                  355566655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.20  E-value=0.00055  Score=50.99  Aligned_cols=159  Identities=14%  Similarity=0.084  Sum_probs=97.6

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccccc-------------ccCCCCc
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYG-------------FSQFRSL   74 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-------------~~~l~~L   74 (179)
                      .-+.++++..+||.|-+...+|       ....+.+++-..|++|.+++|.+. ......             ..+-|.|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~-------e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~L  159 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFP-------EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKL  159 (388)
T ss_pred             HhcCCcceeeeccccccCcccc-------hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCc
Confidence            3456889999999998887666       112234556688999999999874 222211             2334778


Q ss_pred             cEEEeccCCCCCCCCc-----cccCCCCccEEEcCCCccCCCCCCc--------CCCCcccccccccC---------Ccc
Q 042092           75 TILNLRHYNFRGSIPP-----SFCNLTQLMHLDLSSNILSGHIPSS--------LSNLEQLREKKLTC---------SIS  132 (179)
Q Consensus        75 ~~L~l~~~~l~~~~~~-----~l~~l~~L~~l~l~~n~l~~~~~~~--------~~~l~~L~~~~l~~---------~~~  132 (179)
                      +......|++.. .+.     .+...-.|+.+-+..|.|.   |..        +....+|+.+.++.         .+.
T Consensus       160 e~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         160 EVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             eEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            888888887652 221     1222246677777777654   332        22334444444432         123


Q ss_pred             ccccCCCcccEEEcCCCccCCchhhHhh-----cCCCCCcEEEccCCcccc
Q 042092          133 SCIFELVNLTKVSLSSNNLSSNVELYMF-----TKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       133 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~  178 (179)
                      ..+..|+.|++|.+.+|.++......++     ...++|..|..++|-+.|
T Consensus       236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            3455678899999999988775444332     236678888888876654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.02  E-value=0.0047  Score=40.54  Aligned_cols=61  Identities=13%  Similarity=0.191  Sum_probs=22.5

Q ss_pred             chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCC
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSS  105 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~  105 (179)
                      .+..+..|+.+.+.. .+. ......|..+++|+.+.+..+ +.......|..+.+++.+.+..
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            344444555555543 222 233344555555555555443 3323333444444555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.74  E-value=0.0054  Score=48.61  Aligned_cols=121  Identities=17%  Similarity=0.185  Sum_probs=72.1

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCC-ccCCCCCCcCCCC
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN-ILSGHIPSSLSNL  119 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n-~l~~~~~~~~~~l  119 (179)
                      ..+..+..+++|++++|.++  ..|.   --++|+.|.++++.--..+|..+.  .+|++|++++| .+. .+|..+..+
T Consensus        46 ~r~~~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sLe~L  117 (426)
T PRK15386         46 PQIEEARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPESVRSL  117 (426)
T ss_pred             HHHHHhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccccceE
Confidence            34566788999999999886  3452   224699999988543236665542  58999999998 554 566655433


Q ss_pred             cccccccc--cCCcccccc-----------------CC-CcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCC
Q 042092          120 EQLREKKL--TCSISSCIF-----------------EL-VNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN  174 (179)
Q Consensus       120 ~~L~~~~l--~~~~~~~~~-----------------~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  174 (179)
                      . +..+..  -..+|..+.                 .+ ++|++|++++|.... .|..+   -.+|+.|.++.+
T Consensus       118 ~-L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~L---P~SLk~L~ls~n  187 (426)
T PRK15386        118 E-IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKL---PESLQSITLHIE  187 (426)
T ss_pred             E-eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccccc---cccCcEEEeccc
Confidence            2 111110  011221111                 12 368888888877654 33322   236777777665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.00015  Score=54.12  Aligned_cols=84  Identities=20%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             cchhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccc--cccCCCCccEEEecc
Q 042092            4 VLSECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISY--GFSQFRSLTILNLRH   81 (179)
Q Consensus         4 ~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--~~~~l~~L~~L~l~~   81 (179)
                      +.+.|..++.|+.|.|+-|.|+..-             .+..|++|++|+|..|.|.  .+.+  -+.++++|+.|-+..
T Consensus        33 DIsic~kMp~lEVLsLSvNkIssL~-------------pl~rCtrLkElYLRkN~I~--sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   33 DISICEKMPLLEVLSLSVNKISSLA-------------PLQRCTRLKELYLRKNCIE--SLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHHHHhcccceeEEeeccccccch-------------hHHHHHHHHHHHHHhcccc--cHHHHHHHhcCchhhhHhhcc
Confidence            3567899999999999999998543             4899999999999999996  3332  246889999999988


Q ss_pred             CCCCCCCCcc-----ccCCCCccEEE
Q 042092           82 YNFRGSIPPS-----FCNLTQLMHLD  102 (179)
Q Consensus        82 ~~l~~~~~~~-----l~~l~~L~~l~  102 (179)
                      |.=.+..+..     +..+|+|+.||
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            8755454433     34578888886

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.50  E-value=0.0096  Score=39.06  Aligned_cols=85  Identities=18%  Similarity=0.189  Sum_probs=51.7

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      .+.....|+.+.+.. .+...-.           ..+..+..++.+.+..+ +. ......|.++.+++.+.+.. .+..
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~-----------~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~   71 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGE-----------NAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKS   71 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-T-----------TTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred             HHhCCCCCCEEEECC-CeeEeCh-----------hhccccccccccccccc-cc-ccceeeeecccccccccccc-cccc
Confidence            345556788888774 3442223           67888889999999886 54 45567788998999999976 4443


Q ss_pred             CCCccccCCCCccEEEcCCC
Q 042092           87 SIPPSFCNLTQLMHLDLSSN  106 (179)
Q Consensus        87 ~~~~~l~~l~~L~~l~l~~n  106 (179)
                      .....|..+++++.+++..+
T Consensus        72 i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   72 IGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             E-TTTTTT-TTECEEEETTT
T ss_pred             cccccccccccccccccCcc
Confidence            45566777899999988665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.86  E-value=0.0043  Score=27.75  Aligned_cols=18  Identities=61%  Similarity=0.730  Sum_probs=8.9

Q ss_pred             ccEEEcCCCccCCCCCCcC
Q 042092           98 LMHLDLSSNILSGHIPSSL  116 (179)
Q Consensus        98 L~~l~l~~n~l~~~~~~~~  116 (179)
                      |++||+++|.++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.47  E-value=0.03  Score=23.26  Aligned_cols=14  Identities=50%  Similarity=0.688  Sum_probs=7.0

Q ss_pred             cccEEEcCCCccCC
Q 042092          140 NLTKVSLSSNNLSS  153 (179)
Q Consensus       140 ~L~~L~l~~n~~~~  153 (179)
                      +|++|++++|+++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            46666666666654

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.28  E-value=0.095  Score=24.15  Aligned_cols=22  Identities=45%  Similarity=0.525  Sum_probs=17.0

Q ss_pred             CCcccEEEcCCCccCCchhhHhh
Q 042092          138 LVNLTKVSLSSNNLSSNVELYMF  160 (179)
Q Consensus       138 ~~~L~~L~l~~n~~~~~~~~~~~  160 (179)
                      +++|+.|++++|.+.. +|...+
T Consensus         1 L~~L~~L~L~~N~l~~-lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSS-LPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCc-CCHHHc
Confidence            3578999999999998 565544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.28  E-value=0.095  Score=24.15  Aligned_cols=22  Identities=45%  Similarity=0.525  Sum_probs=17.0

Q ss_pred             CCcccEEEcCCCccCCchhhHhh
Q 042092          138 LVNLTKVSLSSNNLSSNVELYMF  160 (179)
Q Consensus       138 ~~~L~~L~l~~n~~~~~~~~~~~  160 (179)
                      +++|+.|++++|.+.. +|...+
T Consensus         1 L~~L~~L~L~~N~l~~-lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSS-LPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCc-CCHHHc
Confidence            3578999999999998 565544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.93  E-value=0.072  Score=24.06  Aligned_cols=18  Identities=28%  Similarity=0.414  Sum_probs=10.3

Q ss_pred             CcccEEEcCCCccCCchh
Q 042092          139 VNLTKVSLSSNNLSSNVE  156 (179)
Q Consensus       139 ~~L~~L~l~~n~~~~~~~  156 (179)
                      ++|++|++++|.+.+...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            467777777777765443

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.67  E-value=0.083  Score=42.44  Aligned_cols=36  Identities=17%  Similarity=0.062  Sum_probs=18.1

Q ss_pred             cccceEEEeeCccc-cCCcccccccCCCCccEEEecc
Q 042092           46 ILHSQNLNLCGNDF-NYSKISYGFSQFRSLTILNLRH   81 (179)
Q Consensus        46 l~~L~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~l~~   81 (179)
                      ++.++.+.+..+.- +..........++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            45566666665532 2111223344566666666665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.10  E-value=0.0084  Score=43.91  Aligned_cols=84  Identities=13%  Similarity=-0.017  Sum_probs=51.1

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      ..+.+.||++.|++... -           ..+.-+++++.++++.|.+.  ..|..+..+..+..++.-.|.++ ..|.
T Consensus        41 ~kr~tvld~~s~r~vn~-~-----------~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~  105 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNL-G-----------KNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPK  105 (326)
T ss_pred             cceeeeehhhhhHHHhh-c-----------cchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence            34556666666665522 2           35566666777777777663  45555555555666666666655 5666


Q ss_pred             cccCCCCccEEEcCCCccC
Q 042092           91 SFCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~  109 (179)
                      +++..+.+++++.-.|.+.
T Consensus       106 s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccccCCcchhhhccCcch
Confidence            7777777777766666543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.49  E-value=0.03  Score=40.02  Aligned_cols=76  Identities=18%  Similarity=0.241  Sum_probs=41.0

Q ss_pred             cceEEEeeCccccCCcccccccCCCCccEEEeccCCC-CCCCCcccc-CCCCccEEEcCCCc-cCCCCCCcCCCCccccc
Q 042092           48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNF-RGSIPPSFC-NLTQLMHLDLSSNI-LSGHIPSSLSNLEQLRE  124 (179)
Q Consensus        48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l-~~~~~~~l~-~l~~L~~l~l~~n~-l~~~~~~~~~~l~~L~~  124 (179)
                      .++.++-+++.|....+ .-+.++++++.|.+.++.- .+..-+.++ -.++|+.|++++|. |++.-...+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            35677777777652222 2355667777777776642 211111222 24678888888664 44333334445555554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.39  E-value=0.26  Score=23.25  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=14.8

Q ss_pred             CcccEEEcCCCccCCchhhHh
Q 042092          139 VNLTKVSLSSNNLSSNVELYM  159 (179)
Q Consensus       139 ~~L~~L~l~~n~~~~~~~~~~  159 (179)
                      +.|++|++++|.+.......+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L   22 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARAL   22 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHH
Confidence            468889999998876444433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.33  E-value=0.084  Score=37.81  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=21.4

Q ss_pred             CcccEEEcCCC-ccCCchhhHhhcCCCCCcEEEccC
Q 042092          139 VNLTKVSLSSN-NLSSNVELYMFTKLKSLEVLDLSY  173 (179)
Q Consensus       139 ~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~  173 (179)
                      ++|+.|++++| +|++..-..+.+ +++|+.|.+.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~  185 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYD  185 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHH-hhhhHHHHhcC
Confidence            57888888866 466644344444 77777666554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.73  E-value=0.74  Score=21.41  Aligned_cols=14  Identities=57%  Similarity=0.710  Sum_probs=8.0

Q ss_pred             CCCcEEEccCCccc
Q 042092          164 KSLEVLDLSYNKLS  177 (179)
Q Consensus       164 ~~L~~L~l~~n~l~  177 (179)
                      .+|+.|+++.|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45566666666553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=84.92  E-value=0.0055  Score=49.74  Aligned_cols=67  Identities=24%  Similarity=0.213  Sum_probs=30.2

Q ss_pred             chhccccceEEEeeCccccCCcccc---cccCC-CCccEEEeccCCCCCCCC----ccccCCCCccEEEcCCCcc
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISY---GFSQF-RSLTILNLRHYNFRGSIP----PSFCNLTQLMHLDLSSNIL  108 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~---~~~~l-~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~l~l~~n~l  108 (179)
                      .+..++.|+.|++++|.+.+.....   .+... ..+++|++..|.++....    ..+.....++.++++.|.+
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            3444555666666666664322111   11111 344555555555543211    2222344555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.36  E-value=0.026  Score=41.47  Aligned_cols=79  Identities=16%  Similarity=0.190  Sum_probs=43.3

Q ss_pred             chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcc
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ  121 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~  121 (179)
                      .+....+.+.||++.|.+-  .....|+-++.+..++++.|.+. .+|..++.+-.+..+++-.|... +.|..++..+.
T Consensus        37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            3445556666666666653  33444555666666666666655 55655555544555555455444 44555555444


Q ss_pred             ccc
Q 042092          122 LRE  124 (179)
Q Consensus       122 L~~  124 (179)
                      ++.
T Consensus       113 ~k~  115 (326)
T KOG0473|consen  113 PKK  115 (326)
T ss_pred             cch
Confidence            443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=81.15  E-value=0.68  Score=37.19  Aligned_cols=65  Identities=22%  Similarity=0.092  Sum_probs=35.3

Q ss_pred             hccccceEEEeeCcc-ccCCcccccccCCCCccEEEeccCC-CCCCCCcc-ccCCCCccEEEcCCCcc
Q 042092           44 FFILHSQNLNLCGND-FNYSKISYGFSQFRSLTILNLRHYN-FRGSIPPS-FCNLTQLMHLDLSSNIL  108 (179)
Q Consensus        44 ~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~-l~~l~~L~~l~l~~n~l  108 (179)
                      ..+.++++++++.+. +++.........+++|+.|.+..+. +++..-.. ...++.|++++++++..
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            345667777777776 5532223322346777777766555 33221111 22456677777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-06

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 73  SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
           +L  L L++  F G IPP+  N ++L+ L LS N LSG IPSSL +L +LR+ KL
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 73  SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
           +L  L L++  F G IPP+  N ++L+ L LS N LSG IPSSL +L +LR+ KL
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.4 bits (207), Expect = 8e-20
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 50  QNLNLCGNDFN-YSKISYGFSQFRSLTILNLRHYN-FRGSIPPSFCNLTQLMHLDLSSNI 107
            NL+L G +      I    +    L  L +   N   G IPP+   LTQL +L ++   
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 108 LSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162
           +SG IP  LS ++ L         L+ ++   I  L NL  ++   N +S  +     + 
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 163 LKSLEVLDLSYNKLS 177
            K    + +S N+L+
Sbjct: 173 SKLFTSMTISRNRLT 187

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.4 bits (207), Expect = 8e-20
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L +   + +   I    SQ ++L  L+  +    G++PPS  +L  L+ +    N +S
Sbjct: 104 HYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 110 GHIPSSLSNLEQLREK------KLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL 163
           G IP S  +  +L         +LT  I      L NL  V LS N L  +  + +F   
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV-LFGSD 220

Query: 164 KSLEVLDLSYNKLS 177
           K+ + + L+ N L+
Sbjct: 221 KNTQKIHLAKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.3 bits (186), Expect = 6e-17
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 64  ISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR 123
           I    ++   L  L + H N  G+IP     +  L+ LD S N LSG +P S+S+L  L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 124 E-----KKLTCSISSCIFELVNLTKV-SLSSNNLSSNV--ELYMFTKLKSLEVLDLSYNK 175
                  +++ +I         L    ++S N L+  +           +L  +DLS N 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----NLAFVDLSRNM 208

Query: 176 LS 177
           L 
Sbjct: 209 LE 210

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.9 bits (154), Expect = 2e-12
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 21/105 (20%)

Query: 73  SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS 132
           +L  ++L      G     F +      + L+ N L+  +                    
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK------------------ 239

Query: 133 SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             +    NL  + L +N +   +     T+LK L  L++S+N L 
Sbjct: 240 --VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 81  HYNFRGSIPPSFCNLTQLMHLDLSSNILSG--HIPSSLSNLEQLR------EKKLTCSIS 132
           +  + G +  +     ++ +LDLS   L     IPSSL+NL  L          L   I 
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 133 SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             I +L  L  + ++  N+S  +  +  +++K+L  LD SYN LS
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALS 138

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q ++L  N   +  +       ++L  L+LR+    G++P     L  L  L++S N L 
Sbjct: 224 QKIHLAKNSLAFD-LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 110 GHIPSS--LSNLEQL 122
           G IP    L   +  
Sbjct: 282 GEIPQGGNLQRFDVS 296

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
            +L+L  N  +   I         L  L L      G IP     +  L  L L  N L+
Sbjct: 421 VSLHLSFNYLS-GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 110 GHIPSSLSNLEQL-----REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
           G IPS LSN   L        +LT  I   I  L NL  + LS+N+ S N+        +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCR 538

Query: 165 SLEVLDLSYNKLS 177
           SL  LDL+ N  +
Sbjct: 539 SLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q L L  N F   KI    S    L  L+L      G+IP S  +L++L  L L  N+L 
Sbjct: 397 QELYLQNNGFT-GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 110 GHIPSSLSNLEQLR-----EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
           G IP  L  ++ L         LT  I S +    NL  +SLS+N L+  +  ++  +L+
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLE 514

Query: 165 SLEVLDLSYNKLS 177
           +L +L LS N  S
Sbjct: 515 NLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR--- 123
             +   +L  L L++  F G IPP+  N ++L+ L LS N LSG IPSSL +L +LR   
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 124 --EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                L   I   +  +  L  + L  N+L+  +   +     +L  + LS N+L+
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 6e-17
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 41  ESLFFILHSQNLNLCGNDFNYS-KISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLM 99
             +      +  +  GN   +    S   ++  +    N+    + G   P+F N   +M
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 100 HLDLSSNILSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSN 154
            LD+S N+LSG+IP  + ++  L         ++ SI   + +L  L  + LSSN L   
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 155 VELYMFTKLKSLEVLDLSYNKLS 177
           +   M + L  L  +DLS N LS
Sbjct: 696 IPQAM-SALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.1 bits (188), Expect = 9e-17
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 16/151 (10%)

Query: 38  ALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP--SFCNL 95
           A++ SL  +   ++L L  +  N S    GF    SLT L+L   +  G +    S  + 
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 96  TQLMHLDLSSNILSGHIPSS----LSNLEQL--REKKLTCSISSCIFE---LVNLTKVSL 146
           + L  L++SSN L      S    L++LE L      ++ +             L  +++
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 147 SSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           S N +S +V++   ++  +LE LD+S N  S
Sbjct: 186 SGNKISGDVDV---SRCVNLEFLDVSSNNFS 213

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + L++  N+F+ + I +      +L  L++      G    +    T+L  L++SSN   
Sbjct: 203 EFLDVSSNNFS-TGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 110 GHIPSS-LSNLEQL--REKKLTCSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKS 165
           G IP   L +L+ L   E K T  I   +      LT + LS N+    V  + F     
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSL 319

Query: 166 LEVLDLSYNKLS 177
           LE L LS N  S
Sbjct: 320 LESLALSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 2e-16
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             ++L  N     +I     +  +L IL L + +F G+IP    +   L+ LDL++N+ +
Sbjct: 493 NWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 110 GHIPSSLSNLEQ-LREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYM-FTKLKSLE 167
           G IP+++      +    +       I       +   + N L           +L +  
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 168 VLDLSYNKLS 177
             +++     
Sbjct: 612 PCNITSRVYG 621

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 47  LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN 106
           + S +L+    +  +S +S        L  L L + +  GS+   F     L  LDLS N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 107 ILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
            LSG + +  S                 +     L  +++SSN L    ++    KL SL
Sbjct: 111 SLSGPVTTLTS-----------------LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153

Query: 167 EVLDLSYNKLS 177
           EVLDLS N +S
Sbjct: 154 EVLDLSANSIS 164

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 39/150 (26%), Positives = 57/150 (38%), Gaps = 12/150 (8%)

Query: 35  LIFALNESLFFILHS-QNLNLCGNDFNYSKIS--YGFSQFRSLTILNLRHYNFRGSIPPS 91
           L F    S    L+S + L+L  N  + + +           L  L +      G +   
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-- 195

Query: 92  FCNLTQLMHLDLSSNILSGHIPS--SLSNLEQLR--EKKLTCSISSCIFELVNLTKVSLS 147
                 L  LD+SSN  S  IP     S L+ L     KL+   S  I     L  +++S
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 148 SNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           SN     +       LKSL+ L L+ NK +
Sbjct: 256 SNQFVGPIPP---LPLKSLQYLSLAENKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 8e-15
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q L+L  N F      +      +LT L+L   +F G++PP F + + L  L LSSN  S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 110 GHIP-SSLSNLEQLRE-----KKLTCSISSCIFEL-VNLTKVSLSSNNLSSNVELYMF-T 161
           G +P  +L  +  L+       + +  +   +  L  +L  + LSSNN S  +   +   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 162 KLKSLEVLDLSYNKLS 177
              +L+ L L  N  +
Sbjct: 392 PKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 6e-14
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 14/138 (10%)

Query: 50  QNLNLCGNDFNYSK-ISYGFSQFRSLTILNLRHYNFRGSIP-PSFCNLTQLMHLDLSSNI 107
            +L+L  N  +              L  LN+                L  L  LDLS+N 
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 108 LSGHIPSS------LSNLEQLR--EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYM 159
           +SG              L+ L     K++  +   +   VNL  + +SSNN S+ +    
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-- 218

Query: 160 FTKLKSLEVLDLSYNKLS 177
                +L+ LD+S NKLS
Sbjct: 219 LGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             LNL  ND +   I       R L IL+L      G IP +   LT L  +DLS+N LS
Sbjct: 659 FILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

Query: 110 GHIPSS 115
           G IP  
Sbjct: 718 GPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 93  CNLTQLMHLDLSSNILS---GHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKV 144
           C   ++  +DLSS  L+     + SSL +L  L         +  S+S       +LT +
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105

Query: 145 SLSSNNLSSNV-ELYMFTKLKSLEVLDLSYNKLS 177
            LS N+LS  V  L        L+ L++S N L 
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 9e-17
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 11/131 (8%)

Query: 47  LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN 106
           +  ++ N       Y      +S  + LT + L +      +P    +L +L  L+++ N
Sbjct: 467 VDWEDANSDYAKQ-YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525

Query: 107 ILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
                     ++            ++        +    +  NNL          K+  L
Sbjct: 526 RGIS-AAQLKADWT---------RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575

Query: 167 EVLDLSYNKLS 177
            +LD  +NK+ 
Sbjct: 576 GLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 7/145 (4%)

Query: 39  LNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRH------YNFRGSIPPSF 92
           ++    F+ + Q LNL     +    +      +  + ++L+        N    I  + 
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 93  CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLS 152
             LT+L  +  +++  +    +           K   +       L +LT V L +    
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 153 SNVELYMFTKLKSLEVLDLSYNKLS 177
           + +       L  L+ L+++ N+  
Sbjct: 505 TQLPD-FLYDLPELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 22/157 (14%), Positives = 40/157 (25%), Gaps = 18/157 (11%)

Query: 39  LNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG-----SIPPSF 92
           + E         + L    N   Y    +       +  ++  +          S     
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 93  CNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE------------KKLTCSISSCIFELVN 140
                   + LS N +        +    +              +               
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 141 LTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           LT + L  N L+S  + +  T L  L  +D+SYN  S
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 21/128 (16%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q   +  N+      S    +   L +L+  H         +F    +L  L L  N + 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
             IP                           +  +  S N L     ++    +  +  +
Sbjct: 609 -EIPEDFCAF------------------TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649

Query: 170 DLSYNKLS 177
           D SYNK+ 
Sbjct: 650 DFSYNKIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 8e-11
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 25/147 (17%)

Query: 50  QNLNLCGNDF------NYSKISYGFSQFRSLTILNLRHYNFRGSIPPS--FCNLTQLMHL 101
             + L  N        +       +     LT ++L  +N   S+        L  L ++
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL-RFNKLTSLSDDFRATTLPYLSNM 758

Query: 102 DLSSNILSGHIPSSLSNLEQLRE-----------KKLTCSISSCIFELVNLTKVSLSSNN 150
           D+S N  S   P+   N  QL+             ++     + I    +L ++ + SN+
Sbjct: 759 DVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 151 LSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +    E         L +LD++ N   
Sbjct: 818 IRKVDE----KLTPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP--SFCNLTQLMHLDLSSN 106
            +L L  N     +I     +    +  L   H N    IP   +  ++  +  +D S N
Sbjct: 598 TDLKLDYNQI--EEIPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 107 ILSGHIPSSLSNLEQLREK----------KLTCSISSCIFELVNLTKVSLSSNNLSS--- 153
            +     +   +++  +            ++    +        ++ + LS+N ++S   
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 154 ---NVELYMFTKLKSLEVLDLSYNKLS 177
                +   +     L  +DL +NKL+
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT 741

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 33/143 (23%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIP-----SSLSNLEQL 122
                 +T L+L  +  +G +P +   LT+L  L   ++  +             ++ + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 123 REKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYM---------------------- 159
           R+ ++         +    L    L  + ++ N E+                        
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 160 -----FTKLKSLEVLDLSYNKLS 177
                  +L  L+++  + +  +
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFT 461

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 31/135 (22%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY------NFRGSIPPSFCNLTQLMHLDL 103
            N+++  N F  S           L    +RH             P        L+ L +
Sbjct: 756 SNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 104 SSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL 163
            SN +   +   L                        L  + ++ N   S +++      
Sbjct: 814 GSNDIR-KVDEKL---------------------TPQLYILDIADNPNIS-IDVTSVCPY 850

Query: 164 KSLEVLDLSYNKLSL 178
               +  L Y+K   
Sbjct: 851 IEAGMYVLLYDKTQD 865

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           +NL+L  N       SY F  F  L +L+L     +     ++ +L+ L  L L+ N + 
Sbjct: 31  KNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 110 GHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
                + S L  L++       L    +  I  L  L +++++ N + S      F+ L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 165 SLEVLDLSYNKLS 177
           +LE LDLS NK+ 
Sbjct: 150 NLEHLDLSSNKIQ 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           ++L+   ++         F   R+L  L++ H + R +    F  L+ L  L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 110 GHIP----SSLSNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL 163
            +      + L NL  L   + +L     +    L +L  +++S NN  S ++ + +  L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL 517

Query: 164 KSLEVLDLSYNKLS 177
            SL+VLD S N + 
Sbjct: 518 NSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 19/128 (14%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + L + GN F  + +   F++ R+LT L+L         P +F +L+ L  L++S N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
                                       L +L  +  S N++ ++ +  +     SL  L
Sbjct: 508 SLDTFPYKC-------------------LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 170 DLSYNKLS 177
           +L+ N  +
Sbjct: 549 NLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 47  LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN 106
           L  +   L   D+    I   F+   +++  +L            F       HL+L + 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNC 314

Query: 107 ILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLS-SNVELYMFTKLKS 165
                    L +L++L         +    +L +L  + LS N LS             S
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 166 LEVLDLSYNKLS 177
           L+ LDLS+N + 
Sbjct: 375 LKYLDLSFNGVI 386

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 24/134 (17%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQL----MHLDLSS 105
           + LN+  N     K+   FS   +L  L+L     +         L Q+    + LDLS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 106 NILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165
           N ++   P +   +                     L K++L +N  S NV       L  
Sbjct: 187 NPMNFIQPGAFKEI--------------------RLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 166 LEVLDLSYNKLSLC 179
           LEV  L   +    
Sbjct: 227 LEVHRLVLGEFRNE 240

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 10/142 (7%)

Query: 36  IFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNL 95
           +  +    F  +    L L  N  + + +         L +  L    FR          
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE---- 244

Query: 96  TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNV 155
                     + L G    ++              I      L N++  SL S  +    
Sbjct: 245 ------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 156 ELYMFTKLKSLEVLDLSYNKLS 177
           +       + LE+++  + +  
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFP 320

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 18/146 (12%), Positives = 47/146 (32%), Gaps = 16/146 (10%)

Query: 46  ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSS 105
           I  +           Y      +   + LT + + +      +P     L ++  ++++ 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 106 N--------ILSGHIPSSLSNLEQLRE------KKLTCSISSCIFELVNLTKVSLSSNNL 151
           N               +     E+++          T  + + + ++  L  +    N L
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 152 SSNVELYMFTKLKSLEVLDLSYNKLS 177
              +    F     L  L+L+YN+++
Sbjct: 343 EGKLP--AFGSEIKLASLNLAYNQIT 366

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 19/147 (12%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRH-------YNFRGSIPPSFCNLTQLMHLD 102
           +NL+   N   Y    +       ++ ++  +             + P+      +  ++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 103 LSSNILSGHIPSSLSNLEQLRE------------KKLTCSISSCIFELVNLTKVSLSSNN 150
           LS+N +S       S    L              K      +        LT + L  N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 151 LSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L+   + +  T L  L  +DLSYN  S
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFS 526

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 14/142 (9%), Positives = 44/142 (30%), Gaps = 4/142 (2%)

Query: 39  LNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLR---HYNFRGSIPPSFCNL 95
               + +       +L  +  N         +   +T+ + +     N    +  +   L
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRL 205

Query: 96  TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNV 155
           T+L    + ++             E     +   +       L +LT V + +    + +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 156 ELYMFTKLKSLEVLDLSYNKLS 177
                  L  +++++++ N+  
Sbjct: 266 PT-FLKALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 13/140 (9%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q + +  N+     +     + + L +L   +    G   P+F +  +L  L+L+ N ++
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQIT 366

Query: 110 GHIPSSLSNLEQLREKKL------TCSISSCIFELVNLTKVSLSSNNLSSNVELYM---- 159
               +     EQ+                     +  ++ +  S N + S          
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 160 --FTKLKSLEVLDLSYNKLS 177
               K  ++  ++LS N++S
Sbjct: 427 PTPFKGINVSSINLSNNQIS 446

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 16/139 (11%), Positives = 33/139 (23%), Gaps = 14/139 (10%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG----SIPPSFCNLTQLMHLDLSS 105
             L+L G      ++     Q   L +L L  +  +       P                
Sbjct: 84  TGLSLEGFGA-SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 106 NILSGHIPSSLSNLE-------QLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELY 158
                         +        +       SI       +  T++   SNN++   +  
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-- 200

Query: 159 MFTKLKSLEVLDLSYNKLS 177
              +L  L    +  +   
Sbjct: 201 AVMRLTKLRQFYMGNSPFV 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 31/170 (18%), Positives = 51/170 (30%), Gaps = 18/170 (10%)

Query: 25  SNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRH--- 81
            N   S        L+ + F  ++  ++NL  N  +       FS    L+ +NL     
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML 469

Query: 82  ----YNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPS-SLSNLEQLREKKLTC----SIS 132
                N       +F N   L  +DL  N L+        + L  L    L+        
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529

Query: 133 SCIFELVNLTKVSLSSN-NLSSNVELYM----FTKLKSLEVLDLSYNKLS 177
           +       L    + +  +   N  L       T   SL  L +  N + 
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 25/147 (17%)

Query: 50  QNLNLCGNDF------NYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF--CNLTQLMHL 101
            ++NL GN        +    +  F     LT ++L  +N    +   F    L  L+ +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL-RFNKLTKLSDDFRATTLPYLVGI 518

Query: 102 DLSSNILSGHIPSSLSNLEQLRE-----------KKLTCSISSCIFELVNLTKVSLSSNN 150
           DLS N  S   P+   N   L+             +        I    +LT++ + SN+
Sbjct: 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 151 LSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +    E        ++ VLD+  N   
Sbjct: 578 IRKVNE----KITPNISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 10/112 (8%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY------NFRGSIPPSFCNLTQLMHLDL 103
             ++L  N F  SK         +L    +R+             P        L  L +
Sbjct: 516 VGIDLSYNSF--SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 104 SSNILSGHIPSSLSNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSS 153
            SN +         N+  L  ++        S +   +      L  +    
Sbjct: 574 GSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 10/115 (8%)

Query: 73  SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG----HIPSSLSNLEQLREKKLT 128
            +T L+L  +   G +P +   LT+L  L L S+          P  +S      +K+  
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 129 CS--ISSCIFELVNLTKVSLSSNNLSSNVELY----MFTKLKSLEVLDLSYNKLS 177
                 + +          L  + ++S+ +                +    N ++
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 15/142 (10%), Positives = 42/142 (29%), Gaps = 14/142 (9%)

Query: 50  QNLNLCGNDFNYSKISYGFSQF---RSLTILNLRHYNFRGSIPPS--FCNLTQLMHLDLS 104
           + L L  +    ++  +G        S         +++ +        + + L+   ++
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 105 SNILSGHIPSSLSNLEQLREKKLT----CSISSCIFELVNLTKVSLSSNNLS-----SNV 155
           S+     I  S     +  +          +S  +  L  L +  + ++           
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227

Query: 156 ELYMFTKLKSLEVLDLSYNKLS 177
           E       +  +  DL ++ L 
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLK 249

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 14/108 (12%)

Query: 80  RHYNFRGSIPPSFC-NLTQLMHLDLSSNILSGHIPSSLSNLEQLR---------EKKLTC 129
           +  +  G+ P     +  ++  L L     SG +P ++  L +L          +     
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 130 SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                I   ++  +      +                +  DL  + ++
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKT----FVDYDPREDFSDLIKDCIN 167

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE-----K 125
             ++T+LNL H   R     +F   +QL  LD+  N +S   P     L  L+       
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 126 KLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +L+           NLT++ L SN++   ++   F K K+L  LDLS+N LS
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLS 134

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 29/157 (18%), Positives = 47/157 (29%), Gaps = 15/157 (9%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCN 94
           I  +    F  L   + L+L  N+         +    ++  + L +  +      SF  
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 95  LTQLMHLDLSSNILSG--HIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLS 147
           +  L  L L    L      PS    L  L         +       +  L  L  + L 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 148 SNNLSS-------NVELYMFTKLKSLEVLDLSYNKLS 177
            NNL+           +Y    L  L +L+L  N   
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 9e-13
 Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL 108
           Q L L          S   F   R+LTIL+L + N           L +L  LDL  N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 109 S--------GHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNV 155
           +        G     L  L  L                   +L  L  + L  NNL++ +
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT-L 575

Query: 156 ELYMFTKLKSLEVLDLSYNKLS 177
              +F    SL+ L+L  N ++
Sbjct: 576 PASVFNNQVSLKSLNLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 16/144 (11%)

Query: 50  QNLNLCGNDFNY-SKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL 108
           +NL+L  +  +  S  ++   ++ +LT+L+L + N       SF  L QL +  L  N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 109 SGHIPSSLSNLEQLRE--------------KKLTCSISSCIFELVNLTKVSLSSNNLSSN 154
                 SL  L  +R                 L          L  L  +++  N++   
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG- 343

Query: 155 VELYMFTKLKSLEVLDLSYNKLSL 178
           ++  MFT L +L+ L LS +  SL
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSL 367

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + LNL  N+ +       F+   +LT L+L   + +      F     L+ LDLS N LS
Sbjct: 76  KVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 110 GHIPSSLSNLEQLREKKLT-CSISS------CIFELVNLTKVSLSSNNLSSNVELYMFTK 162
                +   LE L+E  L+   I +       IF   +L K+ LSSN +        F  
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHA 193

Query: 163 LKSLEVLDLSYNKLS 177
           +  L  L L+  +L 
Sbjct: 194 IGRLFGLFLNNVQLG 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH--IPSSLSNLEQ---- 121
           F   + L  LN+   +  G     F  L  L +L LS++  S       +  +L      
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 122 ---LREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
              L + K++   S     L +L  + L  N +   +    +  L+++  + LSYNK  
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 36/154 (23%), Positives = 52/154 (33%), Gaps = 13/154 (8%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNY-SKISYGFSQFRSLTILNLRHYNFRGSIPPSFC 93
           + +        L + Q L L  N                SL  L L     +   P  F 
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 94  NLTQLMHLDLSSNILSGHIPSSLS---NLEQLREKKLT----CSISSCIFE---LVNLTK 143
            + +L  L L++  L   +   L        +R   L+     + S+  F      NLT 
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 144 VSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           + LS NNL+  V    F  L  LE   L YN + 
Sbjct: 253 LDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQ 285

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 19/131 (14%)

Query: 47  LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN 106
           L   NL       N     Y       L ILNL    F       F +L +L  +DL  N
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

Query: 107 ILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
            L+    S  +N                    V+L  ++L  N ++S  +       ++L
Sbjct: 571 NLNTLPASVFNN-------------------QVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

Query: 167 EVLDLSYNKLS 177
             LD+ +N   
Sbjct: 612 TELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 20/146 (13%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRH---------YNFRGSIPPSFCNLTQLMH 100
           +   L  N+  +   S+      ++  LNL+           +       SF  L  L H
Sbjct: 275 EYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 101 LDLSSNILSGHIPSSLSNLEQLREKKL------TCSISSCIFE---LVNLTKVSLSSNNL 151
           L++  N + G   +  + L  L+   L        ++++  F       L  ++L+ N +
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 152 SSNVELYMFTKLKSLEVLDLSYNKLS 177
           S  +E   F+ L  LEVLDL  N++ 
Sbjct: 394 SK-IESDAFSWLGHLEVLDLGLNEIG 418

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           +N++L  N       SY FS F  L  L+L           ++  L  L +L L+ N + 
Sbjct: 35  KNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 110 GHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
              P S S L  L        KL    S  I +L+ L K++++ N + S      F+ L 
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 165 SLEVLDLSYNKLS 177
           +L  +DLSYN + 
Sbjct: 154 NLVHVDLSYNYIQ 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q+L+   +          F     L  L++ + N +      F  LT L  L ++ N   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 110 GHIP----SSLSNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL 163
            +      ++ +NL  L   + +L          L  L  +++S NNL   ++   + +L
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQL 520

Query: 164 KSLEVLDLSYNKLS 177
            SL  LD S+N++ 
Sbjct: 521 YSLSTLDCSFNRIE 534

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 41  ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMH 100
           E +      Q+L++           +       L  L L     +GSI      L  L +
Sbjct: 301 EDVPKHFKWQSLSIIRCQLK----QFPTLDLPFLKSLTLTM--NKGSISFKKVALPSLSY 354

Query: 101 LDLSSNILSGHIPSSLSNLEQLREKKLTCS------ISSCIFELVNLTKVSLSSNNLSSN 154
           LDLS N LS     S S+L     + L  S      +S+    L  L  +    + L   
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414

Query: 155 VELYMFTKLKSLEVLDLSYNKLS 177
            E   F  L+ L  LD+SY    
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTK 437

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG-SIPPSFCNLTQLMHLDLSSNIL 108
           +NL            S+   Q  +L  LN+ H       +P  F NLT L+H+DLS N +
Sbjct: 107 ENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 109 SGHIPSSLSNLEQLREKKLTCSISSC--------IFELVNLTKVSLSSNNLSSNVELYMF 160
                + L  L +  +  L+  +S           F+ + L +++L  N  SSN+     
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225

Query: 161 TKLKSLEVLDLSYNKLS 177
             L  L V  L   +  
Sbjct: 226 QNLAGLHVHRLILGEFK 242

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 20/128 (15%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L + GN F  + +S  F+   +LT L+L            F  L +L  L++S N L 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
               S  +                    L +L+ +  S N + +  +  +    KSL   
Sbjct: 511 FLDSSHYNQ-------------------LYSLSTLDCSFNRIET-SKGILQHFPKSLAFF 550

Query: 170 DLSYNKLS 177
           +L+ N ++
Sbjct: 551 NLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 27/158 (17%), Positives = 46/158 (29%), Gaps = 9/158 (5%)

Query: 24  LSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLR--H 81
           L  +F S   +     N +   +                           +TI   R  +
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 82  YNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-CSISSCIFE-LV 139
            N        F  L  +  + L+   +       +    + +   +  C +       L 
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 140 NLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            L  ++L+ N  S     +    L SL  LDLS N LS
Sbjct: 329 FLKSLTLTMNKGSI---SFKKVALPSLSYLDLSRNALS 363

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 4/133 (3%)

Query: 47  LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN 106
           +      L   +   S     F    +++ ++L   +             +   L +   
Sbjct: 261 VTIDEFRLTYTNDF-SDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRC 317

Query: 107 ILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS-NVELYMFTKLKS 165
            L       L  L+ L       SIS     L +L+ + LS N LS      Y      S
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 166 LEVLDLSYNKLSL 178
           L  LDLS+N   +
Sbjct: 378 LRHLDLSFNGAII 390

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 25/154 (16%), Positives = 43/154 (27%), Gaps = 15/154 (9%)

Query: 36  IFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI------P 89
           I  + +  F  +    L L GN  + + +         L +  L    F+         P
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 90  PSFCNLTQL--MHLDLSSNILSGHIPSSLSNLEQLREKKLT-CSISS--CIFELVNLTKV 144
                L  +      L+              L  +    L   SI     + +      +
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSL 312

Query: 145 SLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178
           S+    L           L  L+ L L+ NK S+
Sbjct: 313 SIIRCQLKQFP----TLDLPFLKSLTLTMNKGSI 342

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 8/148 (5%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCN 94
           + ++       LH    L L   + N  +  Y F +   L +L + H+ +  ++ P+   
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 95  LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT----CSISSCIFE-LVNLTKVSLSSN 149
              L  L ++   L+     ++ +L  LR   L+     +I   +   L+ L ++ L   
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 150 NLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            L+  VE Y F  L  L VL++S N+L+
Sbjct: 283 QLAV-VEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-- 128
                +L+L     +      F +   L  L+L+ NI+S   P + +NL  LR   L   
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 129 --CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
               I   +F  L NLTK+ +S N +   +  YMF  L +L+ L++  N L 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SF 92
           I  LN+  F      + L L  N    S +  G F+   +L  L LR  N    IP   F
Sbjct: 44  IKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVF 100

Query: 93  CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT----CSISSCIFE-LVNLTKVSLS 147
             L+ L  LD+S N +   +     +L  L+  ++       IS   F  L +L +++L 
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160

Query: 148 SNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             NL+S +     + L  L VL L +  ++
Sbjct: 161 KCNLTS-IPTEALSHLHGLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 10/149 (6%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP-SFC 93
           I A+ +  F  L+  + L +    +    ++       +LT L++ H N   ++P  +  
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR 245

Query: 94  NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT----CSISSCIFE-LVNLTKVSLSS 148
           +L  L  L+LS N +S    S L  L +L+E +L       +    F  L  L  +++S 
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 149 NNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           N L++ +E  +F  + +LE L L  N L+
Sbjct: 306 NQLTT-LEESVFHSVGNLETLILDSNPLA 333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE--- 124
           FS+  +LT L+L           +F +  +L  L L++N L     ++LS  + L+    
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 125 --KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
               ++      +     L  + L SN++SS ++L      + L+VLD   N + 
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 12/153 (7%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCN 94
            F ++ + F      Q L+L       S++  G     +L  L L    F      S  N
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 95  LTQLMHLDLSSNILSGHIPS-SLSNLEQLREKKLTC-------SISSCIFELVNLTKVSL 146
              L HL +  N     + +  L NLE LRE  L+          +  +  L +L  ++L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 147 SSNNLSSNVELYMFTKLKSLEVLDLSYNKLSLC 179
           S N   S ++   F +   LE+LDL++ +L + 
Sbjct: 384 SYNEPLS-LKTEAFKECPQLELLDLAFTRLKVK 415

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 46  ILHSQNLNLCGNDFNY-SKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLS 104
           I           D    S   +      S+  +NL+ + F      +F   + L  LDL+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 105 SNILSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYM 159
           +  LS  +PS L  L  L++      K             +LT +S+  N     +    
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 160 FTKLKSLEVLDLSYNKLS 177
              L++L  LDLS++ + 
Sbjct: 346 LENLENLRELDLSHDDIE 363

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 21/147 (14%), Positives = 45/147 (30%), Gaps = 9/147 (6%)

Query: 39  LNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQ 97
           + E+      + ++L       + S         ++L  L L   +      P      +
Sbjct: 96  MAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 98  LMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS------ISSCIFELVNLTKVSLSSN-N 150
           L  LD  +N +       +S+L+Q     L  +      I    F+      ++     N
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 151 LSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L    +    + ++SL +         
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDE 241

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + L+L             F     L +LNL H     S    F  L  L HL+L  N   
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
                  ++L+ L                  L  + LS  +LSS ++ + FT LK +  +
Sbjct: 463 KGNIQKTNSLQTLG----------------RLEILVLSFCDLSS-IDQHAFTSLKMMNHV 505

Query: 170 DLSYNKLS 177
           DLS+N+L+
Sbjct: 506 DLSHNRLT 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 9/135 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L+L      +      F     L  L L           +      L HL      +S
Sbjct: 60  TFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118

Query: 110 GHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
                 L N + L         ++       F    L  +   +N +   +     + L+
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQ 177

Query: 165 SLEV--LDLSYNKLS 177
                 L+L+ N ++
Sbjct: 178 QATNLSLNLNGNDIA 192

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 24/142 (16%)

Query: 39  LNESLFFILHS-QNLNLCGNDFNYS--KISYGFSQFRSLTILNLRHYNFRGSIPPSFCNL 95
            +E LF  L + Q+LNL GN F     + +        L IL L   +       +F +L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 96  TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNV 155
             + H+DLS N L+     +LS+L+ +                     ++L+SN++S  +
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIY--------------------LNLASNHISI-I 538

Query: 156 ELYMFTKLKSLEVLDLSYNKLS 177
              +   L     ++L  N L 
Sbjct: 539 LPSLLPILSQQRTINLRQNPLD 560

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 50  QNLNLCGNDFNYSKI-SYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL 108
           + L+L  N  ++    S       SL  L+L   N   ++  +F  L QL HLD   + L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 109 SGHIPSS----LSNLEQLR--EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162
                 S    L NL  L         + +     L +L  + ++ N+   N    +FT+
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 163 LKSLEVLDLSYNKLS 177
           L++L  LDLS  +L 
Sbjct: 469 LRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           +NL+L  N       SY F  F  L +L+L     +     ++ +L+ L  L L+ N + 
Sbjct: 31  KNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 110 GHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
                + S L  L++       L    +  I  L  L +++++ N + S      F+ L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 165 SLEVLDLSYNKLS 177
           +LE LDLS NK+ 
Sbjct: 150 NLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 14/144 (9%)

Query: 41  ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMH 100
           +   +    Q+L L    F      +   + +SL  L       +G    S  +L  L  
Sbjct: 298 KDFSYNFGWQHLELVNCKFG----QFPTLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEF 351

Query: 101 LDLSSNILS--GHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSS 153
           LDLS N LS  G    S      L+        +  ++SS    L  L  +    +NL  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 154 NVELYMFTKLKSLEVLDLSYNKLS 177
             E  +F  L++L  LD+S+    
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC- 129
             S   L+L     R     SF +  +L  LDLS   +      +  +L  L    LT  
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 130 ---SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
              S++   F  L +L K+     NL+S +E +    LK+L+ L++++N + 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 11/154 (7%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRH-YNFRGSIPPSFC 93
           I +L    F  L S Q L     +   S  ++     ++L  LN+ H       +P  F 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 94  NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT--------CSISSCIFELVNLTKVS 145
           NLT L HLDLSSN +     + L  L Q+    L+          I    F+ + L K++
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 146 LSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSLC 179
           L +N  S NV       L  LEV  L   +    
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 21/111 (18%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126
           F+   SL +L +   +F+ +  P  F  L  L  LDLS   L    P++ ++        
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-------- 492

Query: 127 LTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                      L +L  ++++SN L S V   +F +L SL+ + L  N   
Sbjct: 493 -----------LSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 47  LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN 106
           L  +   L   D+    I   F+   +++  +L            F       HL+L + 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNC 314

Query: 107 ILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS-NVELYMFTKLKS 165
                    L +L++L         +    +L +L  + LS N LS             S
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 166 LEVLDLSYNKLS 177
           L+ LDLS+N + 
Sbjct: 375 LKYLDLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 10/142 (7%)

Query: 36  IFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNL 95
           +  +    F  +    L L  N  + + +         L +  L    FR     +  NL
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR-----NEGNL 243

Query: 96  TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNV 155
                     + L G    ++              I      L N++  SL S  +    
Sbjct: 244 E-----KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 156 ELYMFTKLKSLEVLDLSYNKLS 177
           +       + LE+++  + +  
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFP 320

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 10/137 (7%)

Query: 48  HSQNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSS 105
           +++ LNL  N+     I    F     L +L L   N    I   +F  L  L  L+L  
Sbjct: 76  NTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFD 132

Query: 106 NILSGHIPSSLSNLEQLREKKLT----CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMF 160
           N L+     +   L +LRE  L      SI S  F  + +L ++ L        +    F
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 161 TKLKSLEVLDLSYNKLS 177
             L +L+ L+L    + 
Sbjct: 193 EGLFNLKYLNLGMCNIK 209

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 33/169 (19%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIP---- 89
           +  +    F  L   + L L  N      I    F++  SL  L+L        I     
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 90  -------------------PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-- 128
                              P+   L  L  L++S N      P S   L  L++  +   
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 129 --CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
               I    F+ L +L +++L+ NNLSS +   +FT L+ L  L L +N
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL 108
             L+L  N  ++            SL  L+L  +N   ++  +F  L QL HLD   + L
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHSNL 113

Query: 109 SGHIPSS----LSNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFT 161
                 S    L NL  L            + IF  L +L  + ++ N+   N    +FT
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 162 KLKSLEVLDLSYNKLS 177
           +L++L  LDLS  +L 
Sbjct: 173 ELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH--IPSSLSNLEQLREKKLT 128
             S T L L     +      F  LTQL  L LSSN LS       S      L+   L+
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 129 C----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                ++SS    L  L  +    +NL    E  +F  L++L  LD+S+    
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 15/176 (8%)

Query: 16  NRLLHYSCLSNSFPSRKKLLIFALNE-------SLFFILHS-QNLNLCGNDFNYSKISYG 67
           N L    C S S      L    L+        S F  L   ++L+   ++         
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN-ILSGHIPSSLSNLEQLREKK 126
           F   R+L  L++ H + R +    F  L+ L  L ++ N      +P   + L  L    
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 127 LTC----SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L+      +S   F  L +L  +++S NN  S ++ + +  L SL+VLD S N + 
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126
           F+   SL +L +   +F+ +  P  F  L  L  LDLS   L    P++ ++L  L+   
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 127 LT----CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKL-KSLEVLDLSYNKLS 177
           ++     S+ +  ++ L +L  +  S N++ +  +         SL  L+L+ N  +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFA 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.1 bits (151), Expect = 5e-12
 Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 48  HSQNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSS 105
           +++ LNL  N      I    F   R L IL L   N   +I   +F  L  L  L+L  
Sbjct: 65  NTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFD 121

Query: 106 NILSGHIPSSLSNLEQLREKKLT----CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMF 160
           N L+     +   L +L+E  L      SI S  F  + +L ++ L      S +    F
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 161 TKLKSLEVLDLSYNKLS 177
             L +L  L+L+   L 
Sbjct: 182 EGLSNLRYLNLAMCNLR 198

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC- 129
             +  +LNL     +     SF +L  L  L LS N +      + + L  L   +L   
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 130 ---SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLS-YNKLS 177
              +I +  F  L  L ++ L +N + S +  Y F ++ SL  LDL    +LS
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLS 174

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 33/169 (19%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIP---- 89
           +  +    F  L   + L L  N      I    F++  SL  L+L        I     
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 90  -------------------PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-- 128
                              P+   L +L  LDLS N LS   P S   L  L++  +   
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 129 --CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
               I    F+ L +L +++L+ NNL+  +   +FT L  LE + L +N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHN 289

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPS----SLSNLEQLR 123
                 L  L+L  +N   S+P     L  L  LD+S N L+  +P      L  L++L 
Sbjct: 73  DGTLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130

Query: 124 --EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
               +L  ++   +      L K+SL++NNL+  +   +   L++L+ L L  N L 
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 71  FRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNILSGHIP--SSLSNLEQLR--EK 125
            +  TIL+L   N   +   +     T+L  L+L    L+  +    +L  L  L     
Sbjct: 30  PKDTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHN 87

Query: 126 KLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +L  S+      L  LT + +S N L+S + L     L  L+ L L  N+L 
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNIL 108
             L+L  N      +        +LT+L++  +N   S+P      L +L  L L  N L
Sbjct: 80  GTLDLSHNQL--QSLPLLGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 109 SGHIPS----SLSNLEQ--LREKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFT 161
              +P         LE+  L    LT  + + +   L NL  + L  N+L + +    F 
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFG 193

Query: 162 KLKSLEVLDLSYN 174
               L    L  N
Sbjct: 194 -SHLLPFAFLHGN 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 11/137 (8%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNIL 108
             L+L  N+ +  +  +  ++  +L  L L H N    I   +F  +  L +LDLSSN L
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 109 SGHIPSSLSNLEQLREKKLTC----SISSCIFE-LVNLTKVSLSSNNLSSNVELYMF--- 160
                   S+L+ L    L       +    FE +  L K+ LS N +S    + +    
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDG 159

Query: 161 TKLKSLEVLDLSYNKLS 177
            KL  L +LDLS NKL 
Sbjct: 160 NKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 111 HIPSSLSNLEQLREKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
            +PS  + L+ L    L+   +      L NL  + LS N+L+  +    F  + +L  L
Sbjct: 36  SLPSYTALLD-LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYL 93

Query: 170 DLSYNKLS 177
           DLS N L 
Sbjct: 94  DLSSNHLH 101

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126
           FS  ++L +L L + N    +   +F ++ QL  L LS N +S      + +  +L    
Sbjct: 108 FSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP--- 163

Query: 127 LTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLS 172
                         L  + LSSN L   + L    KL +     L 
Sbjct: 164 -------------KLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLY 195

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 13/136 (9%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNI 107
           + L+L  N    S +    F +   L +L L + N   ++P   F  L  L  L ++ N 
Sbjct: 40  KKLDLQSNKL--SSLPSKAFHRLTKLRLLYL-NDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 108 LS---GHIPSSLSNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFT 161
           L      +   L NL +LR    +L  S+   +F+ L  LT +SL  N L S +   +F 
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154

Query: 162 KLKSLEVLDLSYNKLS 177
           KL SL+ L L  N+L 
Sbjct: 155 KLTSLKELRLYNNQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 73  SLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSN---ILSGHIPSSLSNLEQLR--EKK 126
               L+L   N   S+P   F  LT+L  L L+ N    L   I   L NLE L   + K
Sbjct: 38  DTKKLDL-QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 127 LTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L  ++   +F+ LVNL ++ L  N L S +   +F  L  L  L L YN+L 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNILSGHIPS----SLSNLEQL 122
           F + ++L  L +   N   ++P   F  L  L  L L  N L   +P     SL+ L  L
Sbjct: 81  FKELKNLETLWV-TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL 138

Query: 123 R--EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                +L  S+   +F+ L +L ++ L +N L   V    F KL  L+ L L  N+L 
Sbjct: 139 SLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNILSGHIPS----SLSNLEQL 122
           F Q  +L  L L   N   S+PP  F +LT+L +L L  N L   +P      L++L++L
Sbjct: 105 FDQLVNLAELRL-DRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL 162

Query: 123 R--EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
           R    +L   +    F+ L  L  + L +N L   V    F  L+ L++L L  N
Sbjct: 163 RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 12/136 (8%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNI 107
           +NL+L  N      +    F  F  L +L+L       +I    + +L+ L  L L+ N 
Sbjct: 31  KNLDLSFNPL--RHLGSYSFFSFPELQVLDL-SRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 108 LS---GHIPSSLSNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFT 161
           +        S LS+L++L   E  L  S+ +     L  L +++++ N + S      F+
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 162 KLKSLEVLDLSYNKLS 177
            L +LE LDLS NK+ 
Sbjct: 147 NLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 12/113 (10%)

Query: 73  SLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIP----SSLSNLEQLR--EK 125
           S   L+L  +N    +   SF +  +L  LDLS   +   I      SLS+L  L     
Sbjct: 29  STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 126 KLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            +  S++   F  L +L K+     NL+S +E +    LK+L+ L++++N + 
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 12/117 (10%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPS--FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK 125
               ++L  LN+  +N   S      F NLT L HLDLSSN +     + L  L Q+   
Sbjct: 120 IGHLKTLKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 126 KLTC--------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
            L+          I    F+ + L +++L +N L S V   +F +L SL+ + L  N
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 38  ALNESLFFILHS-QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCN 94
            + +  +  L     L L GN      ++ G FS   SL  L         S+      +
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVA-VETNLASLENFPIGH 122

Query: 95  LTQLMHLDLSSN-ILSGHIPSSLSNLEQLREKKLTC----SISSCIFE-LVNLTKV---- 144
           L  L  L+++ N I S  +P   SNL  L    L+     SI       L  +  +    
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 145 SLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            LS N ++  ++   F +++ L+ L L  N+L 
Sbjct: 183 DLSLNPMNF-IQPGAFKEIR-LKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 96  TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFE-LVNLTKVSLSSNN 150
               +LDLS N L      S  +  +L+   L+     +I    ++ L +L+ + L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 151 LSSNVELYMFTKLKSLEVLDLSYNKLS 177
           + S + L  F+ L SL+ L      L+
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLA 113

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNI 107
           Q + L GN    S +    F   R+LTIL L        I   +F  L  L  LDLS N 
Sbjct: 35  QRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 108 LSGHIPSS-LSNLEQLREKKLTC----SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFT 161
               +  +    L +L    L       +   +F  L  L  + L  N L + +    F 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 162 KLKSLEVLDLSYNKLS 177
            L +L  L L  N++S
Sbjct: 151 DLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 11/132 (8%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNI 107
             L+L        ++  G F    +L  L L+  N   ++P  +F +L  L HL L  N 
Sbjct: 108 HTLHLDRCGL--QELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNR 164

Query: 108 LSGHIPSSLSNLEQLREKKLTC----SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTK 162
           +S     +   L  L    L       +    F  L  L  + L +NNLS+ +       
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAP 223

Query: 163 LKSLEVLDLSYN 174
           L++L+ L L+ N
Sbjct: 224 LRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 23/109 (21%)

Query: 71  FRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC 129
             +   + L H N    +P  SF     L  L L SN+L+                    
Sbjct: 31  PAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLA-------------------- 69

Query: 130 SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            I +  F  L  L ++ LS N    +V+   F  L  L  L L    L 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNI 107
             L+L  N    ++I  G F   ++L  L L + N    I P +F  L +L  L LS N 
Sbjct: 55  ALLDLQNNKI--TEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 108 LSGHIPSSL-SNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSNNL-SSNVELYMFTK 162
           L   +P  +   L++LR  E ++T  +   +F  L  +  V L +N L SS +E   F  
Sbjct: 112 LK-ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 163 LKSLEVLDLSYNKLS 177
           +K L  + ++   ++
Sbjct: 170 MKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 35/157 (22%), Positives = 53/157 (33%), Gaps = 16/157 (10%)

Query: 33  KLLIFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP- 90
            L    +    F  +     + +     N + I  G     SLT L+L        +   
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQGL--PPSLTELHLDGNKIT-KVDAA 210

Query: 91  SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSL 146
           S   L  L  L LS N +S     SL+N   LRE  L       +   + +   +  V L
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270

Query: 147 SSNNLSS-----NVELYMFTKLKSLEVLDLSYNKLSL 178
            +NN+S+            TK  S   + L  N +  
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 18/140 (12%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNI 107
             L+L GN    +K+         +L  L L   N   ++   S  N   L  L L++N 
Sbjct: 195 TELHLDGNKI--TKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNK 251

Query: 108 LSGHIPSSLSNLEQLRE-----------KKLTCSISSCIFELVNLTKVSLSSNNLS-SNV 155
           L   +P  L++ + ++                        +  + + VSL SN +    +
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 156 ELYMFTKLKSLEVLDLSYNK 175
           +   F  +     + L   K
Sbjct: 311 QPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 13/115 (11%)

Query: 71  FRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSN-ILSGHIP----SSLSNLEQLR- 123
            ++L  L + H N    +    F  L Q++ ++L +N + S  I       +  L  +R 
Sbjct: 120 PKTLQELRV-HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 124 -EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            +  +T +I   +    +LT++ L  N ++  V+      L +L  L LS+N +S
Sbjct: 179 ADTNIT-TIPQGLPP--SLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 71  FRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC 129
                +L+L++ N    I    F NL  L  L L +N +S   P + + L +L    L+ 
Sbjct: 51  PPDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 130 ----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                +   + +   L ++ +  N ++  V   +F  L  + V++L  N L 
Sbjct: 110 NQLKELPEKMPK--TLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLK 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 9/171 (5%)

Query: 16  NRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLT 75
            R    +  S +   +    I  L+E  F       L       +      G  +  ++ 
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 76  ILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE--------KKL 127
            L++  +     +   +  L ++  + + ++ +     S   +L+ L           + 
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 128 TCSISSCIFELVNLTKVSLSSNNLSS-NVELYMFTKLKSLEVLDLSYNKLS 177
               S+C     +L  + LS N+L S      +   LK+L  LD+S N   
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
                +L +L L+          +F +L  L HLDLS N LS    S    L  L+   L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 128 TC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                    ++S    L NL  + + +    S +    F  L SL  L++    L 
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 8/144 (5%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNY-SKISYGFSQFRSLTILNLRHYNFRGSIPPSFC 93
            +  N +      S Q L L  N      K        ++LT L++    F   +P S  
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407

Query: 94  NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS 153
              ++  L+LSS  +          LE L       ++ S    L  L ++ +S N L +
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVL--DVSNNNLDSFSLFLPRLQELYISRNKLKT 465

Query: 154 NVELYMFTKLKSLEVLDLSYNKLS 177
              L   +    L V+ +S N+L 
Sbjct: 466 ---LPDASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC- 129
             ++  L+L                  L  L L S+ ++     +  +L  L    L+  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 130 ---SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
              S+SS  F  L +L  ++L  N   +     +F  L +L+ L +   
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 4/133 (3%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q L +   +         F+   SL  L ++  + R     S  ++  + HL L  +  +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYM----FTKLKS 165
             +      L  +R  +L  +  +             S     +     +    F +L  
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 166 LEVLDLSYNKLSL 178
           L    L  +++  
Sbjct: 246 LLRYILELSEVEF 258

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNI 107
             ++L  N  + ++++   FS+ + L  L +        I   +F  L+ L+ L L  N 
Sbjct: 33  NYVDLSLN--SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 108 LSGHIPS----SLSNLEQLR--EKKLT-CSISSCIFE-LVNLTKVSLSSNNLSSNVELYM 159
               + +     L+NLE L   +  L    +S   F+ L +L  + L  NN+        
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 160 FTKLKSLEVLDLSYNKLS 177
           F  ++   VLDL++NK+ 
Sbjct: 150 FLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 11/114 (9%)

Query: 73  SLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIP----SSLSNLEQLR--EK 125
            +  ++L   N    +   SF  L  L  L +        I       LS+L  L+    
Sbjct: 31  HVNYVDL-SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 126 KLTCSISSCIFE-LVNLTKVSLSSNNL-SSNVELYMFTKLKSLEVLDLSYNKLS 177
           +    + +  F  L NL  ++L+  NL  + +    F  L SLE+L L  N + 
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 73  SLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-- 129
            +   +L   +   ++    F + T L  L L+ N ++    ++   L  L +  L+   
Sbjct: 276 GVKTCDL-SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 130 --SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             SI S +FE L  L  + LS N++ + +    F  L +L+ L L  N+L 
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 14/166 (8%)

Query: 19  LHYSCLSNSFPSRKKLLIFALNESLFFILHSQN---LNLCGNDFNYSKISYG-FSQFRSL 74
           L  S   N   S         +   F  L +      +L  +      +    FS F  L
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDL 301

Query: 75  TILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC---- 129
             L L   N    I   +F  LT L+ L+LS N L         NL++L    L+     
Sbjct: 302 EQLTL-AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 130 SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
           ++    F  L NL +++L +N L S V   +F +L SL+ + L  N
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCN--------------L 95
             L+L GN F  S     F       I +L   N                          
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 96  TQLMHLDLSSN---ILSGHIPSSLSNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSN 149
           + +   DLS +    L   + S  ++LEQL   + ++   I    F  L +L K++LS N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333

Query: 150 NLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            L S ++  MF  L  LEVLDLSYN + 
Sbjct: 334 FLGS-IDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 14/131 (10%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPS--FCNLTQLMHLDLSSN 106
           + L L   + + + +S   F    SL +L LR  N +  I P+  F N+ +   LDL+ N
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFN 164

Query: 107 ILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
            +       L N +      L          L ++T   ++   L    +     K  S+
Sbjct: 165 KVKSICEEDLLNFQGKHFTLL---------RLSSITLQDMNEYWLGW-EKCGNPFKNTSI 214

Query: 167 EVLDLSYNKLS 177
             LDLS N   
Sbjct: 215 TTLDLSGNGFK 225

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 43/124 (34%), Positives = 56/124 (45%), Gaps = 11/124 (8%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SF 92
           IFAL +S+F      + L L  N+   +KI    F     L  LNL   NF GSI    F
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEI--NKIDDNAFWGLTHLLKLNL-SQNFLGSIDSRMF 343

Query: 93  CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT----CSISSCIFE-LVNLTKVSLS 147
            NL +L  LDLS N +      S   L  L+E  L      S+   IF+ L +L K+ L 
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403

Query: 148 SNNL 151
           +N  
Sbjct: 404 TNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 112 IPSSLSNLEQLREKKLTCSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLD 170
           +P+ ++ +  L    +   ++   F  L +L  + +        +    F  L SL +L 
Sbjct: 28  LPAHVNYV-DLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85

Query: 171 LSYNKLS 177
           L YN+  
Sbjct: 86  LDYNQFL 92

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           ++L +       +  +   S   +L  L +   +      P+   LT L  LD+S +   
Sbjct: 69  KDLTINNIHA--TNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 110 GHIPSSLSNLEQLREKKLT--CSIS--SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165
             I + ++ L ++    L+   +I+    +  L  L  +++  + +              
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD---YRGIEDFPK 182

Query: 166 LEVLDLSYNKLS 177
           L  L      + 
Sbjct: 183 LNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + L + G D    KI    S   SLT+L++ H     SI      L ++  +DLS N   
Sbjct: 91  ERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 110 GHIPSSLSNLEQLREKKLT-CSIS--SCIFELVNLTKVSLSSNNLSS 153
             I   L  L +L+   +    +     I +   L ++   S  +  
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 8/146 (5%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCN 94
           I  + +  F+ L + Q LNL  N       S  F     +  ++L+  +       +F  
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 95  LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELV-NLTKVSLSSNNLSS 153
           L +L  LDL  N L+     ++  +  + +  L+ +    + ++      + LS N L +
Sbjct: 361 LEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415

Query: 154 NVELYMFTKLKSLEVLDLSYNKLSLC 179
              LY   ++  L++L L+ N+ S C
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSC 441

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 13/177 (7%)

Query: 13  AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNL-NLCGNDFNYSKIS------ 65
            F N +L    +S +  +      F+   S           ++ G  F +  I       
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 66  YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK 125
           +      S+  L+L H          F  L  L  L+L+ N ++     +   L+ L+  
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 126 KLTC----SISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            L+      + S  F  L  +  + L  N+++  ++   F  L+ L+ LDL  N L+
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 35/143 (24%), Positives = 48/143 (33%), Gaps = 18/143 (12%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCN 94
           I  +  S F  L   Q L L       +     F    +L IL+L         P +F  
Sbjct: 36  IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95

Query: 95  LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSN 154
           L  L  L L    LS  +                         L  LT++ LS N + S 
Sbjct: 96  LFHLFELRLYFCGLSDAVLK-----------------DGYFRNLKALTRLDLSKNQIRSL 138

Query: 155 VELYMFTKLKSLEVLDLSYNKLS 177
                F KL SL+ +D S N++ 
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 25/151 (16%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRG-SIPPSF 92
           I+ L+   F  L     L L     + + +  G F   ++LT L+L     R   + PSF
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 93  CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLS 152
             L  L  +D SSN +       L  L+                    L+  SL++N+L 
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGK-----------------TLSFFSLAANSLY 187

Query: 153 SNVELYMFT-----KLKSLEVLDLSYNKLSL 178
           S V +         +   LE+LD+S N  ++
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 24/173 (13%), Positives = 46/173 (26%), Gaps = 29/173 (16%)

Query: 33  KLLIFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS 91
            L    L +  F  L +   L+L  N      +   F +  SL  ++             
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

Query: 92  FCNLTQ--LMHLDLSSNILSGHIPSSLSNLEQ-----------------------LREKK 126
              L    L    L++N L   +                                     
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227

Query: 127 LTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK--SLEVLDLSYNKLS 177
           ++ S +  +    ++       +N+    +   F  L   S+  LDLS+  + 
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 23/105 (21%)

Query: 73  SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS 132
              I   R  N    +P     L     L LS N +     SS   LEQL+         
Sbjct: 5   DGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQL-------- 52

Query: 133 SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                      + L S      ++   F  L +L +LDL  +K+ 
Sbjct: 53  -----------LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 17/160 (10%)

Query: 33  KLLIFALNESLFFILHSQNLNLCGNDFNYSKI---SYGFSQFRSLTILNLRHYNFRGSIP 89
                    S +   +S N  +        K        +       L LR        P
Sbjct: 39  YNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP 97

Query: 90  PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVS 145
                L+ L H+ + +  L   +P ++     L    L      ++ + I  L  L ++S
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156

Query: 146 LSSNN--------LSSNVELYMFTKLKSLEVLDLSYNKLS 177
           + +          L+S         L +L+ L L +  + 
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q++ +        ++     QF  L  L L     R ++P S  +L +L  L + +    
Sbjct: 107 QHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
             +P  L++ +   E             LVNL  + L    + S         L++L+ L
Sbjct: 164 TELPEPLASTDASGE----------HQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSL 211

Query: 170 DLSYNKLS 177
            +  + LS
Sbjct: 212 KIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 12/126 (9%)

Query: 57  NDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSL 116
                +  S       +L  L L     R S+P S  NL  L  L + ++ LS  +  ++
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 117 SNLEQLRE------KKLTCSISSCIFELVNLTKVSLSSNNLSSNVEL-YMFTKLKSLEVL 169
            +L +L E        L  +          L ++ L   +  + + L     +L  LE L
Sbjct: 226 HHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCS--NLLTLPLDIHRLTQLEKL 282

Query: 170 DLSYNK 175
           DL    
Sbjct: 283 DLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 9/109 (8%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           ++L +  +    S +         L  L+LR      + PP F     L  L L      
Sbjct: 209 KSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 110 GHIPSSLSNLEQLRE------KKLTCSISSCIFELVNLTKVSLSSNNLS 152
             +P  +  L QL +        L+  + S I +L     + +  +  +
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/132 (12%), Positives = 31/132 (23%), Gaps = 29/132 (21%)

Query: 72  RSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSS---------------- 115
                L  +                +  + D +    +    +S                
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT 71

Query: 116 LSNLEQLREKKLTC---------SISSCIFELVNLTKVSLSSNNLSSNVEL-YMFTKLKS 165
              LE   +                    F L +L  +++ +  L    EL     +   
Sbjct: 72  ADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTMQQFAG 128

Query: 166 LEVLDLSYNKLS 177
           LE L L+ N L 
Sbjct: 129 LETLTLARNPLR 140

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 10/174 (5%)

Query: 11  NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQ 70
              +   + ++S  +     +     F  + +    L    +    +D      SY +  
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV---SDVFGFPQSYIYEI 298

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC- 129
           F ++ I N      R         ++  +HLD S+N+L+  +  +  +L +L    L   
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 130 ------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                  I+    ++ +L ++ +S N++S + +    +  KSL  L++S N L+
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 50  QNLNLCGNDF-NYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC-NLTQLMHLDLSSNI 107
           + L L  N     SKI+   +Q +SL  L++   +         C     L+ L++SSNI
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 108 LSGHIPSSL-SNLEQ--LREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
           L+  I   L   ++   L   K+  SI   + +L  L +++++SN L S V   +F +L 
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLT 468

Query: 165 SLEVLDLSYN 174
           SL+ + L  N
Sbjct: 469 SLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 2/108 (1%)

Query: 72  RSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-S 130
           +  TILN+              +L++L  L +S N +     S     ++L    L+   
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 131 ISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +        VNL  + LS N   +      F  +  L+ L LS   L 
Sbjct: 81  LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 21/180 (11%)

Query: 15  MNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHS------QNLNLCGNDFNYSKI--SY 66
           +   L +     S  S K L I  +   +F    S       N+N+     + +++    
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS-----GHIPSSLSNLEQ 121
             S+      L+  +     ++  +  +LT+L  L L  N L        + + + +L+Q
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 122 L--REKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKL-KSLEVLDLSYNKLS 177
           L   +  ++            +L  +++SSN L+  +    F  L   ++VLDL  NK+ 
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS---FCNLTQLMHLDLSSN 106
            +L+   N      +         L  L L   N    +         +  L  LD+S N
Sbjct: 327 LHLDFSNNLLT-DTVFENCGHLTELETLIL-QMNQLKELSKIAEMTTQMKSLQQLDISQN 384

Query: 107 ILSGHIPSSL-SNLEQLREKKL-TCSISSCIFE--LVNLTKVSLSSNNLSSNVELYMFTK 162
            +S        S  + L    + +  ++  IF      +  + L SN + S +   +  K
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVV-K 442

Query: 163 LKSLEVLDLSYNKLS 177
           L++L+ L+++ N+L 
Sbjct: 443 LEALQELNVASNQLK 457

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 41/175 (23%), Positives = 63/175 (36%), Gaps = 16/175 (9%)

Query: 17  RLLHYSCLSNSFPSRKKLL---IFALNESLFFILHSQNL-NLCGNDFNYSKISY----GF 68
           R   Y C+ ++           I    + ++F      L N     F  S +        
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 69  SQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
             FR + +LNL        I   +F     +  L +  N +    P    N+  L    L
Sbjct: 66  DSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 128 TC----SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                 S+   IF     LT +S+S+NNL   +E   F    SL+ L LS N+L+
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 69  SQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT 128
                LTIL L+H N          N   L+ +DLS N L   +      +++L    ++
Sbjct: 223 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 129 C----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                +++     +  L  + LS N+L   VE     +   LE L L +N + 
Sbjct: 281 NNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQP-QFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
              +  L  ++L +      +   F  + +L  L +S+N L   +      +  L+   L
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 128 T----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +      +     +   L  + L  N++ +       +   +L+ L LS+N   
Sbjct: 303 SHNHLLHVERNQPQFDRLENLYLDHNSIVT----LKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL 108
             ++L  N+    KI Y  F + + L  L + + N   ++      +  L  LDLS N L
Sbjct: 251 VEVDLSYNEL--EKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHL 307

Query: 109 SGHIPSSLSNLEQLREKKLT-CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
             H+  +    ++L    L   SI +        L  ++LS N+   N    +F  +   
Sbjct: 308 L-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 366

Query: 167 EVLDL 171
            V D 
Sbjct: 367 AVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 13/145 (8%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPS-F 92
           I  L   +F  +     L L  ND   S +  G F     LT L++   N    I    F
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSM-SNNNLERIEDDTF 161

Query: 93  CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLS 152
              T L +L LSSN L+ H+   LS +  L    ++ ++ S +   + + ++  S N+++
Sbjct: 162 QATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218

Query: 153 SNVELYMFTKLKSLEVLDLSYNKLS 177
             V   +  +L     L L +N L+
Sbjct: 219 V-VRGPVNVELTI---LKLQHNNLT 239

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 73  SLTILNLRHYNFRGSIPPS--FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC- 129
               L L + N    +  +  F  L QL  ++ S+N ++     +      + E  LT  
Sbjct: 33  YTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 130 ---SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
              ++   +F+ L +L  + L SN ++  V    F  L S+ +L L  N+++
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT 142

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 1e-09
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 25/137 (18%)

Query: 41  ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMH 100
                    + L+L   D   + +     Q   +T L+L H N   ++PP+   L  L  
Sbjct: 435 VLKMEYADVRVLHLAHKDL--TVLC-HLEQLLLVTHLDLSH-NRLRALPPALAALRCLEV 490

Query: 101 LDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMF 160
           L  S N L      ++  +  L                  L ++ L +N L  +  +   
Sbjct: 491 LQASDNALE-----NVDGVANLP----------------RLQELLLCNNRLQQSAAIQPL 529

Query: 161 TKLKSLEVLDLSYNKLS 177
                L +L+L  N L 
Sbjct: 530 VSCPRLVLLNLQGNSLC 546

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
                   I  +   + + ++     +   +  LDLS N LS    + L+   +L    L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 128 TC---SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +      +  +  L  L  + L++N +             S+E L  + N +S
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG-HIPSSLSNLEQLREKK 126
            S+ +    + L +              +++ +LDL  N +   +     ++ + L    
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 127 LTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L       +   +     L  + LSSN L+       F     +  + L  NKL 
Sbjct: 176 LQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 87  SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNL 141
           +I     N  +     ++ + L   + S   +   ++E       L+   ++ +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 142 TKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             ++LSSN L    E      L +L  LDL+ N + 
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q L+L  N+ +    +   +   +L  LNL++ NF   +        +L  LDLSSN L+
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQ-VVFAKLKTLDLSSNKLA 204

Query: 110 GHIPSSLSNLEQLREKKLT----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165
             +     +   +    L       I   +    NL    L  N          F+K + 
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 166 LEVLDLSYNK 175
           ++ +     K
Sbjct: 264 VQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 10/130 (7%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + LNL  N    +          +L  L+L + N+   +         +  L  ++N +S
Sbjct: 61  ELLNLSSNVLYETL---DLESLSTLRTLDLNN-NYVQELLV----GPSIETLHAANNNIS 112

Query: 110 GHIPSSLSNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167
               S     + +     K+T            +  + L  N + +     +     +LE
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 168 VLDLSYNKLS 177
            L+L YN + 
Sbjct: 173 HLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 10/134 (7%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG-SIPPSFCNLTQLMHLDLSSNIL 108
           +N+ L  N     +          +  L+L+       +      +   L HL+L  N +
Sbjct: 123 KNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 109 SGHIPSS--LSNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
              +      + L+ L     KL   +         +T +SL +N L    +       +
Sbjct: 182 Y-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQ 237

Query: 165 SLEVLDLSYNKLSL 178
           +LE  DL  N    
Sbjct: 238 NLEHFDLRGNGFHC 251

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 73  SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC--- 129
              I  +   + + ++     +   +  LDLS N LS    + L+   +L    L+    
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 130 SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             +  +  L  L  + L++N +             S+E L  + N +S
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q L+L  N+ +    +   +   +L  LNL++ NF   +        +L  LDLSSN L+
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQ-VVFAKLKTLDLSSNKLA 204

Query: 110 GHIPSSLSNLEQLREKKLT----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS 165
             +     +   +    L       I   +    NL    L  N          F+K + 
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 166 LEVLDLSYNK 175
           ++ +     K
Sbjct: 264 VQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG-HIPSSLSNLEQLREKK 126
            S+ +    + L +              +++ +LDL  N +   +     ++ + L    
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 127 LTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L       +   +     L  + LSSN L+       F     +  + L  NKL 
Sbjct: 176 LQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
                ++  L+L                T+L  L+LSSN+L       L +L  LR   L
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDL 87

Query: 128 TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             +    +    ++  +  ++NN+S        ++ +  + + L+ NK++
Sbjct: 88  NNNYVQELLVGPSIETLHAANNNISR----VSCSRGQGKKNIYLANNKIT 133

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 87  SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNL 141
           +I     N  +     ++ + L   + S   +   ++E       L+   ++ +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 142 TKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             ++LSSN L    E      L +L  LDL+ N + 
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR--EK 125
                +L  L+L + N+   +         +  L  ++N +S    S     + +     
Sbjct: 76  LESLSTLRTLDLNN-NYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130

Query: 126 KLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           K+T            +  + L  N + +     +     +LE L+L YN + 
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 8/135 (5%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHL-DLSSNIL 108
           ++ +L GN F+   +   FS+ + +  +  +            C +  L H        L
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 109 SGHIPSSLSNLEQLREKKL------TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTK 162
                  L  L++     L      T  +           ++        + V   +  +
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT-VIDQVTLR 358

Query: 163 LKSLEVLDLSYNKLS 177
            ++   L+     L 
Sbjct: 359 KQAKITLEQKKKALD 373

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 73  SLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPS----SLSNLEQLR--EK 125
           ++T + L   N    IPP +F    +L  +DLS+N +S  +       L +L  L     
Sbjct: 33  TITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 126 KLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           K+T  +   +FE L +L  + L++N ++  + +  F  L +L +L L  NKL 
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNI 107
             + L  N      I  G FS ++ L  ++L   N    + P +F  L  L  L L  N 
Sbjct: 35  TEIRLEQNTI--KVIPPGAFSPYKKLRRIDL-SNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 108 LSGHIPS----SLSNLEQL--REKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMF 160
           ++  +P      L +L+ L     K+   +    F+ L NL  +SL  N L + +    F
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTF 148

Query: 161 TKLKSLEVLDLSYN 174
           + L++++ + L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126
              FR + +LNL        I   +F     +  L +  N +    P    N+  L    
Sbjct: 71  LDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 127 LT----CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L      S+   IF     LT +S+S+NNL   +E   F    SL+ L LS N+L+
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 22/158 (13%), Positives = 58/158 (36%), Gaps = 9/158 (5%)

Query: 25  SNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNF 84
            N  P + +     ++ +L +     ++++     +     +      +  I+  ++   
Sbjct: 7   YNVKPRQPEY--KCIDSNLQYDCVFYDVHIDMQTQDVYF-GFEDITLNNQKIVTFKNSTM 63

Query: 85  RGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFE-LV 139
           R        +  Q+  L+L+   +      + +    +++  +       +   +F+ + 
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 140 NLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            LT + L  N+LSS +   +F     L  L +S N L 
Sbjct: 124 LLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC- 129
              LTIL L+H N   +      N   L+ +DLS N L   +      +++L    ++  
Sbjct: 231 NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 130 ---SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
              +++     +  L  + LS N+L   VE     +   LE L L +N + 
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQP-QFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL 108
             ++L  N+    KI Y  F + + L  L + + N   ++      +  L  LDLS N L
Sbjct: 257 VEVDLSYNEL--EKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHL 313

Query: 109 SGHIPSSLSNLEQLREKKLT-CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
             H+  +    ++L    L   SI +        L  ++LS N+   N    +F  +   
Sbjct: 314 L-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 372

Query: 167 EVLDLSYN 174
            V D   +
Sbjct: 373 AVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 6/133 (4%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q  N+      Y  I            +++               L     +   ++ + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 110 GHIPSSLSNLEQLREKKLT----CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLK 164
               + L +  Q+    L       I +  F     + K+ +  N +   +  ++F  + 
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVP 123

Query: 165 SLEVLDLSYNKLS 177
            L VL L  N LS
Sbjct: 124 LLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
            S   SL   N+ +         +      +  LD S N ++         L  L+ +  
Sbjct: 188 LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242

Query: 128 TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             + ++ +     L +V LS N L   +  + F K++ LE L +S N+L 
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV 291

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 13/135 (9%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSN- 106
           + L+L       + +S   F     LT LNL  YN   ++    F +LT+L  L L++N 
Sbjct: 38  EKLDLQSTGL--ATLSDATFRGLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 107 --ILSGHIPSSLSNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFT 161
              L   +   L+ L++L     +L  S+ S +F+ L  L ++ L++N L S +    F 
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFD 152

Query: 162 KLKSLEVLDLSYNKL 176
           KL +L+ L LS N+L
Sbjct: 153 KLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 75  TILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSN---ILSGHIPSSLSNLEQLR--EKKLT 128
             L+L       ++  + F  LT+L  L+L  N    LS  +   L+ L  L     +L 
Sbjct: 38  EKLDL-QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 129 CSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            S+   +F  L  L K+ L  N L S +   +F +L  L+ L L+ N+L 
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 40/115 (34%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNILSGHIPS----SLSNLEQL 122
           F     L  L L   N   S+P   F +LTQL  L L  N L   +PS     L+ L++L
Sbjct: 79  FDDLTELGTLGL-ANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKEL 136

Query: 123 --REKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
                +L  SI +  F+ L NL  +SLS+N L S V    F +L  L+ + L  N
Sbjct: 137 RLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 8e-09
 Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 14/175 (8%)

Query: 15  MNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSL 74
           ++ L   +  +          +         IL+ +N++    D   +++         L
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ--QWLKPGL 151

Query: 75  TILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHI-------PSSLSNLEQLRE--- 124
            +L++   +              L  LDLS N   G         P     L+ L     
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 125 --KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             +  +   S+     V L  + LS N+L              L  L+LS+  L 
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 26/154 (16%)

Query: 24  LSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYN 83
           LS++    ++ LI AL    F  L    L   G +      S   +    L  L+L H +
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 84  FRGSIPPSFC-NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLT 142
            R +     C   +QL  L+LS   L                      +   +     L+
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK--------------------QVPKGLPA--KLS 277

Query: 143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
            + LS N L          +L  +  L L  N  
Sbjct: 278 VLDLSYNRLDR---NPSPDELPQVGNLSLKGNPF 308

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 9e-09
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 9/129 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L +  +      ++   +    L  L+L +       P    +LT L +     N ++
Sbjct: 158 NYLTVTESKV--KDVT-PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

Query: 110 GHIP-SSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEV 168
              P ++++ L  L+      +  S +  L  LT + + +N +S    +     L  L++
Sbjct: 213 DITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD---INAVKDLTKLKM 269

Query: 169 LDLSYNKLS 177
           L++  N++S
Sbjct: 270 LNVGSNQIS 278

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
            +LNL  N  +        S    L  L +     +   P    NLT L  L L+ N + 
Sbjct: 135 YSLNLGAN--HNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190

Query: 110 GHIP-SSLSNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
              P +SL++L        ++T      +  +  L  + + +N ++    L     L  L
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD---LSPLANLSQL 245

Query: 167 EVLDLSYNKLS 177
             L++  N++S
Sbjct: 246 TWLEIGTNQIS 256

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIP--SSLSNLEQLRE 124
                 +L  L L   N     P    NLT++  L+L +N     +   S+++ L  L  
Sbjct: 105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 125 KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            +      + I  L +L  +SL+ N +     +     L SL       N+++
Sbjct: 163 TESKVKDVTPIANLTDLYSLSLNYNQIED---ISPLASLTSLHYFTAYVNQIT 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 27/128 (21%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L +  N    S I+        L +LN+       S      NL+QL  L L++N L 
Sbjct: 246 TWLEIGTNQI--SDIN-AVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLG 300

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
                 +  L                    NLT + LS N+++    +     L  ++  
Sbjct: 301 NEDMEVIGGLT-------------------NLTTLFLSQNHITD---IRPLASLSKMDSA 338

Query: 170 DLSYNKLS 177
           D +   + 
Sbjct: 339 DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 10/112 (8%)

Query: 69  SQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT 128
           +         L+  +    +      L  +  L ++   ++      +  L  L    L 
Sbjct: 19  ADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLN 74

Query: 129 -CSISSC--IFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
              I+    +  LV LT + + +N ++    +     L +L  L L+ + +S
Sbjct: 75  GNQITDISPLSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNIS 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 1e-08
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 13/131 (9%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L L GN    + I    +  ++L  L L     +  +     +L +L  L L  N +S
Sbjct: 68  TKLFLNGN--KLTDIK-PLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS 122

Query: 110 GHIPSSLSNLEQLREKKLT-CSIS--SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
               + L +L QL    L    I+  + +  L  L  +SL  N +S    +     L  L
Sbjct: 123 --DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKL 177

Query: 167 EVLDLSYNKLS 177
           + L LS N +S
Sbjct: 178 QNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 6e-08
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 17/133 (12%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L L  N      +S      + L  L+L H      I     +L QL  L L +N ++
Sbjct: 90  GWLFLDEN--KIKDLS-SLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT 144

Query: 110 GHIPSSLSNLEQLREKKLTCS---IS--SCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
               + LS L +L    L+     IS    +  L  L  + LS N++S    L     LK
Sbjct: 145 --DITVLSRLTKLDT--LSLEDNQISDIVPLAGLTKLQNLYLSKNHISD---LRALAGLK 197

Query: 165 SLEVLDLSYNKLS 177
           +L+VL+L   +  
Sbjct: 198 NLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 94  NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-CSISS--CIFELVNLTKVSLSSNN 150
              + +  +L    ++     + + L  + +       I S   I  L N+TK+ L+ N 
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 76

Query: 151 LSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L+    +   T LK+L  L L  NK+ 
Sbjct: 77  LTD---IKPLTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 114 SSLSNLEQLREKKLT-CSISSCIF--ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLD 170
                  +  +  L   S++  +   EL ++ ++  +++++ S   +     L ++  L 
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLF 71

Query: 171 LSYNKLS 177
           L+ NKL+
Sbjct: 72  LNGNKLT 78

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNI 107
             L+L  ND   S++    F   + L  L L + N    I   +F  L +L  L +S N 
Sbjct: 57  TLLDLQNNDI--SELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 108 LSGHIPSSLSNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSNNL-SSNVELYMFTKL 163
           L    P+  S+L +LR  + ++   +   +F  L N+  + +  N L +S  E   F  L
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 164 KSLEVLDLSYNKLS 177
           K L  L +S  KL+
Sbjct: 173 K-LNYLRISEAKLT 185

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 17/157 (10%)

Query: 33  KLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP-S 91
            L         F  L    L +       + I        +L  L+L H   + +I    
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEA--KLTGIPKDL--PETLNELHLDHNKIQ-AIELED 212

Query: 92  FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSL 146
               ++L  L L  N +      SLS L  LRE      KL+  + + + +L  L  V L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

Query: 147 SSNNLSSNVE-----LYMFTKLKSLEVLDLSYNKLSL 178
            +NN++         +    K      + L  N +  
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYN--FRGSIPPSFCNLTQLMHLDLSSN 106
             L +  N     K+  G FS  R++  + +   N        P   +  +L +L +S  
Sbjct: 126 VELRIHDNRI--RKVPKGVFSGLRNMNCIEM-GGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 107 ILSGHIPSSLSNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKL 163
            L+G        L +L     K+  +I          L ++ L  N +   +E    + L
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFL 240

Query: 164 KSLEVLDLSYNKLS 177
            +L  L L  NKLS
Sbjct: 241 PTLRELHLDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 32/148 (21%), Positives = 49/148 (33%), Gaps = 11/148 (7%)

Query: 36  IFALNESLFFILHS-QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCN 94
           I  + + +F  L +   + + GN    S    G      L  L +        IP     
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL-- 191

Query: 95  LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT----CSISSCIFE-LVNLTKVSLSSN 149
              L  L L  N +       L    +L    L       I +     L  L ++ L +N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 150 NLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            LS  V       LK L+V+ L  N ++
Sbjct: 252 KLSR-VPAG-LPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 71  FRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSN-ILSGHIPS---SLSNLEQLR-- 123
             SL  L + H N    +P   F  L  +  +++  N + +            L  LR  
Sbjct: 122 PSSLVELRI-HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 124 EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           E KLT  I   + E   L ++ L  N + + +EL    +   L  L L +N++ 
Sbjct: 181 EAKLT-GIPKDLPE--TLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 71  FRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC 129
               T+L+L++ +    +    F  L  L  L L +N +S     + S L +L++  ++ 
Sbjct: 53  SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 130 ----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                I   +    +L ++ +  N +   V   +F+ L+++  +++  N L 
Sbjct: 112 NHLVEIPPNLPS--SLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 15/109 (13%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
            S   +L  L+L   N    +P    +L  L  + L +N ++    +    +        
Sbjct: 237 LSFLPTLRELHL-DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV---- 291

Query: 128 TCSISSCIFELVNLTKVSLSSNNLS-SNVELYMFTKLKSLEVLDLSYNK 175
                    +      +SL +N +    V+   F  +     +     K
Sbjct: 292 ---------KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIP-SSLSNLEQLREKK 126
            +    +T L                 L  L  ++ S+N L+   P  +L+ L  +    
Sbjct: 42  QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 99

Query: 127 LTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
              +  + +  L NLT ++L +N ++    +     L +L  L+LS N +S
Sbjct: 100 NQIADITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTIS 147

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126
           G     +LT +N  +       P    NLT+L+ + +++N ++    + L+NL  L    
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118

Query: 127 LTC---SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178
           L     +    +  L NL ++ LSSN +S    +   + L SL+ L        L
Sbjct: 119 LFNNQITDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQVTDL 170

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIP-SSLSNLEQL--R 123
             +   +L  L++       S       LT L  L  ++N +S   P   L+NL++L   
Sbjct: 172 PLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229

Query: 124 EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             +L   I + +  L NLT + L++N +S+   L   + L  L  L L  N++S
Sbjct: 230 GNQLK-DIGT-LASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQIS 278

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 9/129 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L+L GN      I    +   +LT L+L +       P     LT+L  L L +N +S
Sbjct: 224 DELSLNGNQL--KDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278

Query: 110 GHIP-SSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEV 168
              P + L+ L  L   +      S I  L NLT ++L  NN+S    +   + L  L+ 
Sbjct: 279 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV---SSLTKLQR 335

Query: 169 LDLSYNKLS 177
           L    NK+S
Sbjct: 336 LFFYNNKVS 344

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L L  N               +L  L L           +   LT L  L   + +  
Sbjct: 115 TGLTLFNNQITDID---PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD 169

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
               ++L+ LE+L       S  S + +L NL  +  ++N +S    +     L +L+ L
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD---ITPLGILTNLDEL 226

Query: 170 DLSYNKLS 177
            L+ N+L 
Sbjct: 227 SLNGNQLK 234

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           ++L    N    S I+       +L  L+L     +     +  +LT L  LDL++N +S
Sbjct: 202 ESLIATNNQI--SDIT-PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256

Query: 110 GHIP-SSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEV 168
              P S L+ L +L+      S  S +  L  LT + L+ N L     +   + LK+L  
Sbjct: 257 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED---ISPISNLKNLTY 313

Query: 169 LDLSYNKLS 177
           L L +N +S
Sbjct: 314 LTLYFNNIS 322

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126
             S    LT L L         P     LT L +L+L+ N L     S +SNL+ L    
Sbjct: 260 PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLT 315

Query: 127 LT-CSISSCIF--ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L   +IS       L  L ++   +N +S    +     L ++  L   +N++S
Sbjct: 316 LYFNNISDISPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 94  NLTQLMHLDLSSNILSGHIP-SSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLS 152
            L + M   L    ++  +  + L  +  L+  +L       +  L NLT+++ S+N L+
Sbjct: 22  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 81

Query: 153 SNVELYMFTKLKSLEVLDLSYNKLS 177
               +     L  L  + ++ N+++
Sbjct: 82  D---ITPLKNLTKLVDILMNNNQIA 103

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L L  N+ +        S    L  L   +     S   S  NLT +  L    N +S
Sbjct: 312 TYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQIS 366

Query: 110 GHIPSSLSNLEQLREKKLT-CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167
              P  L+NL ++ +  L   + ++       N++  +   N   + +     +   S  
Sbjct: 367 DLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 168 VLDLSYNKLS 177
             D+++N  S
Sbjct: 425 EPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q L    N  +        +   ++  L+  H       P    NLT++  L L+    +
Sbjct: 334 QRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388

Query: 110 GHIPSSLSNLEQLREKKLTCSISSC---IFELVNLTKVSLSSNNLSSNVEL-YMFTKLKS 165
               +  +N+      K           I +  + T+  ++ N  S   E+ Y F++  +
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVT 448

Query: 166 LEVLDLSYN 174
           +     +++
Sbjct: 449 IGKGTTTFS 457

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 21/92 (22%)

Query: 87  SIPPSFCNLTQLMHLDLSSNILSGHIPS-SLSNLEQLREKKLTCSISSCIFELVNLTKVS 145
                      L  L + +     H+    L  L +LR                    ++
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR-------------------NLT 62

Query: 146 LSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +  + L   V    F     L  L+LS+N L 
Sbjct: 63  IVKSGLRF-VAPDAFHFTPRLSRLNLSFNALE 93

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIP-------SSLSNL 119
           F    +L  L + +   +  +P     +  Q + LD+  NI    I        S  S +
Sbjct: 100 FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 120 EQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             L +  +   I +  F    L +++LS NN    +   +F       +LD+S  ++ 
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 20/108 (18%)

Query: 71  FRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC 129
            R+   L       R  I   +F     L  +++S N +   I + + +           
Sbjct: 29  PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS----------- 76

Query: 130 SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                   L  L ++ +   N    +    F  L +L+ L +S   + 
Sbjct: 77  -------NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 10/116 (8%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPP-SFCNLT-QLMHLDLSSNILSGHIPS------SLSNL 119
                   +L+++      +I   SF  L+ + + L L+ N +   I +       L  L
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 120 EQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNK 175
                  L    +           + +S   + S +  Y    LK L        K
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 74  LTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPS-SLSNLEQLREKKLTC--- 129
             IL L     +  I  S  N TQL  L+LS N     +P+             ++    
Sbjct: 156 SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 130 -SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
            S+ S   E  NL K  L + +  +  +L    KL +L    L+Y 
Sbjct: 215 HSLPSYGLE--NLKK--LRARSTYNLKKLPTLEKLVALMEASLTYP 256

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 13/141 (9%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNIL 108
             LNL GN +     +  FS    L IL + + +    I    F  LT L  L++ ++ L
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 109 SGHIPSSLSNLEQLREKKLT----CSISSCIFE-LVNLTKVSLSSNNLSSN-------VE 156
             + P SL +++ +    L       +     +   ++  + L   +L +         E
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 157 LYMFTKLKSLEVLDLSYNKLS 177
                K  +   + ++   L 
Sbjct: 247 TNSLIKKFTFRNVKITDESLF 267

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 18/141 (12%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNI 107
           + L +  +  +            ++++ L L H      +        + +  L+L    
Sbjct: 177 EELEIDAS--DLQSYEPKSLKSIQNVSHLIL-HMKQHILLLEIFVDVTSSVECLELRDTD 233

Query: 108 LSGHIPSSLS--------NLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNV 155
           L     S LS             R  K+T      +   + ++  L ++  S N L S V
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-V 292

Query: 156 ELYMFTKLKSLEVLDLSYNKL 176
              +F +L SL+ + L  N  
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 71  FRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC 129
             ++  L+L   N    I  S       L  L L+SN ++     S S+L  L    L+ 
Sbjct: 51  TEAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 130 ----SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
               ++SS  F+ L +LT ++L  N   +  E  +F+ L  L++L +     
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 23/156 (14%)

Query: 36  IFALNESLFFILHSQNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPSFCN 94
           +F+    L  +               +KI    F+    L  L +   + +   P S  +
Sbjct: 144 LFSHLTKLQILRVGNMDTF-------TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 95  LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC---------SISSCIFE----LVNL 141
           +  + HL L        +   +     +   +L            +S+            
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 142 TKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             V ++  +L   ++L    ++  L  L+ S N+L 
Sbjct: 257 RNVKITDESLFQVMKL--LNQISGLLELEFSRNQLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 84  FRGSIPPSFCNLTQLMHLDLSSNILS---GHIPSSLSNLEQLREKKLTCSISSCIFE-LV 139
              S   +  +  +      SS  L+     +  ++ +L  L   ++T  IS+   +  V
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSL-DLSNNRIT-YISNSDLQRCV 76

Query: 140 NLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           NL  + L+SN +++ +E   F+ L SLE LDLSYN LS
Sbjct: 77  NLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLS 113

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPS--SLSNLEQL--R 123
            ++  S+  +   + +   S+      L  + +L L  N L   I +   L+NL  L   
Sbjct: 37  QNELNSIDQIIA-NNSDIKSVQG-IQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILT 93

Query: 124 EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
             +L  S+ + +F+ L NL ++ L  N L S +   +F KL +L  L+L++N+L
Sbjct: 94  GNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQL 145

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 12/117 (10%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPS----SLSNLEQL 122
           G     ++  L L   N    I  +   LT L +L L+ N L   +P+     L+NL++L
Sbjct: 58  GIQYLPNVRYLAL-GGNKLHDIS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKEL 114

Query: 123 R--EKKLTCSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
              E +L  S+   +F +L NLT ++L+ N L S +   +F KL +L  LDLSYN+L
Sbjct: 115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQL 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSN---ILSGHIPSSLSNLEQLR 123
             +  +LT L L   N   S+P   F  LT L  L L  N    L   +   L+NL  L 
Sbjct: 81  LKELTNLTYLIL-TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139

Query: 124 --EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
               +L  S+   +F+ L NLT++ LS N L S +   +F KL  L+ L L  N+L
Sbjct: 140 LAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNI 107
             L L GN      +  G F +  +L  L L   N   S+P   F  LT L +L+L+ N 
Sbjct: 88  TYLILTGNQL--QSLPNGVFDKLTNLKELVL-VENQLQSLPDGVFDKLTNLTYLNLAHNQ 144

Query: 108 LSGHIPS----SLSNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMF 160
           L   +P      L+NL +L     +L  S+   +F+ L  L  + L  N L S V   +F
Sbjct: 145 LQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVF 201

Query: 161 TKLKSLEVLDLSYN 174
            +L SL+ + L  N
Sbjct: 202 DRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 73  SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIP-SSLSNLEQLR--EKKLTC 129
                NL               L  +  +  +++ +        L N+  L     KL  
Sbjct: 20  ETIKANL-KKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH- 76

Query: 130 SISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
                   EL NLT + L+ N L S +   +F KL +L+ L L  N+L
Sbjct: 77  --DISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL 121

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           +   L G + N +            + L L   N   S+P +     Q+  L+++ N L 
Sbjct: 37  EKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI 93

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
             +P   ++LE L        +S+      +L  + + +N L+   EL        LE +
Sbjct: 94  -SLPELPASLEYLDACDN--RLSTLPELPASLKHLDVDNNQLTMLPEL-----PALLEYI 145

Query: 170 DLSYNKLS 177
           +   N+L+
Sbjct: 146 NADNNQLT 153

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR--EKKLT 128
              +T+L +   N   S+P    +L    +LD   N LS  +P   ++L+ L     +LT
Sbjct: 79  PPQITVLEITQ-NALISLPELPASLE---YLDACDNRLS-TLPELPASLKHLDVDNNQLT 133

Query: 129 CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             +         L  ++  +N L+   EL       SLEVL +  N+L+
Sbjct: 134 -MLPELP---ALLEYINADNNQLTMLPEL-----PTSLEVLSVRNNQLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + +N   N     +++       SL +L++R+ N    +P    +L     LD+S+N+L 
Sbjct: 143 EYINADNN-----QLTMLPELPTSLEVLSVRN-NQLTFLPELPESLE---ALDVSTNLLE 193

Query: 110 GHIPSSLSNLEQLREKKLTCSIS--------SCIFELVNLTKVSLSSNNLSS 153
             +P+         E ++               I  L     + L  N LSS
Sbjct: 194 -SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 10/174 (5%)

Query: 11  NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQ 70
              +   + + +  + +   R     F  +E+    L  +++    N          +S 
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK---NQVFLFSKEALYSV 327

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC- 129
           F  + I  L   +          + +    L+ + N+ +  +    S L++L+   L   
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 130 ---SISSCIFELVNLTKVSL---SSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
              +         N++ +     S N+L+S+         +S+ VL+LS N L+
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 27/130 (20%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNI 107
           + L+L  N    S++     S    L +L L  +N   S+    F     L +LD+S N 
Sbjct: 55  KALSLSQNSI--SELRMPDISFLSELRVLRL-SHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 108 LSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167
           L  +I                         + +L  + LS N+         F  L  L 
Sbjct: 112 LQ-NISCC---------------------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149

Query: 168 VLDLSYNKLS 177
            L LS  K  
Sbjct: 150 FLGLSAAKFR 159

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS-----GHIPSSLSNLEQL 122
                S T LN     F  S+      L +L  L L  N L        +  ++S+LE L
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408

Query: 123 --REKKLTCSISSCIFELV-NLTKVSLSSNNLSSNVELYMFTKL-KSLEVLDLSYNKLS 177
                 L             ++  ++LSSN L+ +V    F  L   ++VLDL  N++ 
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 50  QNLNLCGNDF-NYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNL-TQLMHLDLSSNI 107
           Q L L  N   N+ K++       SL  L++   +         C     ++ L+LSSN+
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 108 LSGHIPSSL-SNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
           L+G +   L   ++ L     ++  SI   +  L  L +++++SN L S V   +F +L 
Sbjct: 440 LTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLT 497

Query: 165 SLEVLDLSYN 174
           SL+ + L  N
Sbjct: 498 SLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 15/136 (11%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             LN   N F    +  G S  + L  L L+    + +          +  L+     L+
Sbjct: 356 TFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLN 413

Query: 110 GHIPSSLSNLEQLREK---------KLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMF 160
                +        E           LT S+  C+     +  + L +N + S  +    
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSIPK--DV 469

Query: 161 TKLKSLEVLDLSYNKL 176
           T L++L+ L+++ N+L
Sbjct: 470 THLQALQELNVASNQL 485

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + L + GN    + +         L+I +         +P     L     L +  N L+
Sbjct: 84  RTLEVSGNQL--TSLPVLPPGLLELSIFSNPL----THLPALPSGLC---KLWIFGNQLT 134

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
             +P     L++L        ++S       L K+   +N L+S     +      L+ L
Sbjct: 135 -SLPVLPPGLQELS--VSDNQLASLPALPSELCKLWAYNNQLTS-----LPMLPSGLQEL 186

Query: 170 DLSYNKLS 177
            +S N+L+
Sbjct: 187 SVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           Q L++  N    + +    S+   L   N R      S+P     L     L +S N L+
Sbjct: 184 QELSVSDNQL--ASLPTLPSELYKLWAYNNRLT----SLPALPSGLK---ELIVSGNRLT 234

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
             +P   S L++L        ++S       L  +S+  N L+   E      L S   +
Sbjct: 235 -SLPVLPSELKELM--VSGNRLTSLPMLPSGLLSLSVYRNQLTRLPES--LIHLSSETTV 289

Query: 170 DLSYNKLS 177
           +L  N LS
Sbjct: 290 NLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 93  CNLTQLMHLDLSSNILSGHIPSSL-SNLEQL--REKKLTCSISSCIFELVNLTKVSLSSN 149
           C       L++  + L+  +P  L +++  L   +  LT S+ +   EL  L    +S N
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT-SLPALPPELRTLE---VSGN 91

Query: 150 NLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            L+S   L     L  L +       L 
Sbjct: 92  QLTSLPVL--PPGLLELSIFSNPLTHLP 117

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 23/131 (17%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP-SFCNLT-QLMHLDLSSNI 107
           + L +                     IL +    +  SIP  +F  L  + + L L +N 
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 108 LSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS-L 166
            +                    S+    F    L  V L+ N   + ++   F  + S  
Sbjct: 168 FT--------------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 167 EVLDLSYNKLS 177
            +LD+S   ++
Sbjct: 208 SLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 11/114 (9%)

Query: 72  RSLTILNLRHYNFRGSIPP-SFCNLTQLMHLDLSSNILSGHIP----SSLSNLEQLR--- 123
            S   L L   + R +IP  +F NL  +  + +S ++    +      +LS +  +    
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 124 EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
            + LT  I     + L  L  + + +  L    +L          +L+++ N  
Sbjct: 90  TRNLT-YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 87  SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFE-LVN 140
           S+PPS         L L    L      + SNL  +    ++       + S  F  L  
Sbjct: 28  SLPPS------TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81

Query: 141 LTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +T + + +    + ++     +L  L+ L +    L 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 46  ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSS 105
              ++ + L G      K+    S  ++   L L   N    I      +  L  L L  
Sbjct: 22  ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKISS-LSGMENLRILSLGR 79

Query: 106 NILSGHIPSSLSNLEQLREKKLTCSIS-------SCIFELVNLTKVSLSSNNLSSNVELY 158
           N++       + NL+ + +      IS       S I +LVNL  + +S+N +++  E+ 
Sbjct: 80  NLIK-----KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 159 MFTKLKSLEVLDLSYNKLS 177
               L  LE L L+ N L 
Sbjct: 135 KLAALDKLEDLLLAGNPLY 153

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 23/104 (22%)

Query: 75  TILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSC 134
           T L L   N    +P    N   L  +DLS+N +S                    ++S+ 
Sbjct: 34  TELYL-DGNQFTLVPKELSNYKHLTLIDLSNNRIS--------------------TLSNQ 72

Query: 135 IF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            F  +  L  + LS N L   +    F  LKSL +L L  N +S
Sbjct: 73  SFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 112 IPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDL 171
           IP  ++ L  L   + T  +   +    +LT + LS+N +S+ +    F+ +  L  L L
Sbjct: 29  IPRDVTELY-LDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLIL 85

Query: 172 SYNKLS 177
           SYN+L 
Sbjct: 86  SYNRLR 91

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 25/106 (23%)

Query: 75  TILNLRHYNFRGSIPPS--FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS 132
           T L L + N  G I     F  L  L+ L+L  N L+                     I 
Sbjct: 32  TELLL-NDNELGRISSDGLFGRLPHLVKLELKRNQLT--------------------GIE 70

Query: 133 SCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
              FE   ++ ++ L  N +   +   MF  L  L+ L+L  N++S
Sbjct: 71  PNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 30/127 (23%), Positives = 43/127 (33%), Gaps = 24/127 (18%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNIL 108
             L L  N+         F +   L  L L   N    I P+ F   + +  L L  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLEL-KRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 109 SGHIPSSLSNLEQLREKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167
                                 IS+ +F  L  L  ++L  N +S  V    F  L SL 
Sbjct: 91  K--------------------EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLT 129

Query: 168 VLDLSYN 174
            L+L+ N
Sbjct: 130 SLNLASN 136

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 13/131 (9%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L+  G     + I  G     +L  L L+  N    + P   NLT++  L+LS N L 
Sbjct: 44  TTLSAFGTGV--TTIE-GVQYLNNLIGLELKD-NQITDLAP-LKNLTKITELELSGNPLK 98

Query: 110 GHIPSSLSNLEQLREKKLTC---SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
               S+++ L+ ++   LT    +  + +  L NL  + L  N +++   +     L +L
Sbjct: 99  --NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN---ISPLAGLTNL 153

Query: 167 EVLDLSYNKLS 177
           + L +   ++S
Sbjct: 154 QYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIP-SSLSNLEQLREK 125
                  +T L L     + ++      L  +  LDL+S  ++   P + LSNL+ L   
Sbjct: 80  PLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 126 KLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
               +  S +  L NL  +S+ +  +S    L     L  L  L    NK+S
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSD---LTPLANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 9/130 (6%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + L+L       + ++   +   +L +L L       +I P    LT L +L + +  +S
Sbjct: 110 KTLDLTST--QITDVT-PLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS 164

Query: 110 GHIP-SSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEV 168
              P ++LS L  L+      S  S +  L NL +V L +N +S    +       +L +
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD---VSPLANTSNLFI 221

Query: 169 LDLSYNKLSL 178
           + L+   ++ 
Sbjct: 222 VTLTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 69  SQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIP--SSLSNLEQLREKK 126
               +   +     N       +  +L  +  L      ++  I     L+NL  L  K 
Sbjct: 16  PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKD 72

Query: 127 LTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
              +  + +  L  +T++ LS N L +   +     L+S++ LDL+  +++
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKN---VSAIAGLQSIKTLDLTSTQIT 120

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 18/133 (13%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           QN N   +  N   ++ G   F +L  L+L H N    + P   +LT+L  L ++ N L 
Sbjct: 44  QNFNGDNS--NIQSLA-GMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRNRLK 98

Query: 110 GHIPSSLSNLEQLREKKLTCS---IS--SCIFELVNLTKVSLSSNNLSSNVELYMFTKLK 164
                +L+ +      +L      +     +  L NL  +S+ +N L S   + M   L 
Sbjct: 99  -----NLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS---IVMLGFLS 150

Query: 165 SLEVLDLSYNKLS 177
            LEVLDL  N+++
Sbjct: 151 KLEVLDLHGNEIT 163

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 73  SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS 132
            L  L + + N    +P    N + L  +D+ +N L   +P    +LE +          
Sbjct: 132 LLEYLGVSN-NQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEEL 188

Query: 133 SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             +  L  LT +   +N+L       +     SLE +    N L 
Sbjct: 189 PELQNLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 23/155 (14%), Positives = 43/155 (27%), Gaps = 20/155 (12%)

Query: 39  LNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQL 98
              ++  +    +      + N   +S        L  L     +    +P    +L  L
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSL 116

Query: 99  MHLDLSSNILSGHIPS---------------SLSNLEQLREKKLT-CSISSCIFELVNLT 142
           +  + +   LS   P                 L N   L+   +   S+        +L 
Sbjct: 117 LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 176

Query: 143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            ++  +N L    EL     L  L  +    N L 
Sbjct: 177 FIAAGNNQLE---ELPELQNLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 58  DFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLS 117
             + + +        SL  +   +        P   NL  L  +   +N+L   +P    
Sbjct: 201 YADNNSLKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 118 NLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           +LE L        ++       +LT + +S N  S   EL       +L  L+ S N++ 
Sbjct: 258 SLEALNV--RDNYLTDLPELPQSLTFLDVSENIFSGLSEL-----PPNLYYLNASSNEIR 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
                 LT +   + N   ++P    +L  L   D         +P    +L  L     
Sbjct: 233 LQNLPFLTTIYADN-NLLKTLPDLPPSLEALNVRDNYLT----DLPELPQSLTFL--DVS 285

Query: 128 TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
               S       NL  ++ SSN + S     +     SLE L++S NKL 
Sbjct: 286 ENIFSGLSELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 25/131 (19%)

Query: 62  SKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNL-------------TQLMHLDLSSNIL 108
           +++       +S T        +  + PP                   Q   L+L++  L
Sbjct: 24  TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83

Query: 109 SGHIPSSLSNLEQLR--EKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL 166
           S  +P    +LE L      LT  +      L +L   + +   LS             L
Sbjct: 84  S-SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL--------PPLL 133

Query: 167 EVLDLSYNKLS 177
           E L +S N+L 
Sbjct: 134 EYLGVSNNQLE 144

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 16/114 (14%)

Query: 78  NLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT--------- 128
            LRH +    +P    N+        + +    + P       ++   +L          
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 129 -----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                  +SS      +L  +  S N+L+   EL     LKSL V + +   LS
Sbjct: 76  LELNNLGLSSLPELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALS 127

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 18/128 (14%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
           + LN+  N     K+    +    L  L     N    +P    NL     L +  N L 
Sbjct: 320 EELNVSNN-----KLIELPALPPRLERLIASF-NHLAEVPELPQNLK---QLHVEYNPLR 370

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL 169
              P    ++E LR   +   ++       NL ++ + +N L            +S+E L
Sbjct: 371 -EFPDIPESVEDLR---MNSHLAEVPELPQNLKQLHVETNPLRE-----FPDIPESVEDL 421

Query: 170 DLSYNKLS 177
            ++  ++ 
Sbjct: 422 RMNSERVV 429

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 14/116 (12%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE-K 125
            ++       L+LR Y     I      L Q   +D S N +       L     LR  K
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-----KLDGFPLLRRLK 67

Query: 126 KLT------CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
            L       C I   + + L +LT++ L++N+L    +L     LKSL  L +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 14/133 (10%)

Query: 50  QNLNLCGNDFNYSKISYG-FSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNI 107
           Q L L  N    +K+  G F    +L  L L   N  G++P   F +LTQL  LDL +N 
Sbjct: 43  QILYLHDNQI--TKLEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 108 LSGHIPS----SLSNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFT 161
           L+  +PS     L +L++L     KLT  +   I  L +LT ++L  N L S +    F 
Sbjct: 100 LTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFD 156

Query: 162 KLKSLEVLDLSYN 174
           +L SL    L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 13/110 (11%)

Query: 75  TILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNIL----SGHIPSSLSNLEQLR--EKKL 127
            IL L H N    + P  F +L  L  L L SN L     G +  SL+ L  L     +L
Sbjct: 43  QILYL-HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQL 100

Query: 128 TCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
           T  + S +F+ LV+L ++ +  N L+         +L  L  L L  N+L
Sbjct: 101 T-VLPSAVFDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQNQL 147

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 75  TILNLRHYNFRGSIPPSFCNLTQLMHLDLSSN---ILSGHIPSSLSNLEQLR--EKKLTC 129
           T L+L   + +      F  LT L  L L  N    L   + + L++L  L     +L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 130 SISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
           S+ + +F+ L  L +++L++N L S +   +F KL  L+ L L  N+L
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 13/133 (9%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNIL 108
             L+L  N    S  +  F +  SLT L L   N   S+P   F  LT L +L+LS+N L
Sbjct: 31  TYLDLETNSLK-SLPNGVFDELTSLTQLYL-GGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 109 SGHIPS----SLSNLEQLR--EKKLTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFT 161
              +P+     L+ L++L     +L  S+   +F+ L  L  + L  N L S V   +F 
Sbjct: 89  QS-LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFD 145

Query: 162 KLKSLEVLDLSYN 174
           +L SL+ + L  N
Sbjct: 146 RLTSLQYIWLHDN 158

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 7/110 (6%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
            +    LT  +         +  S   L++L  L      L     +  + L   + +  
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285

Query: 128 TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                  +     L  +   +  ++        ++   L  L L+  +L+
Sbjct: 286 RKIKELDVTHNTQLYLLDCQAAGITELD----LSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 68  FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL 127
            +    LT LN    N    +  S      L +L+ + N L+    S  + L +L     
Sbjct: 102 VTPLTKLTYLNCDT-NKLTKLDVS--QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN 158

Query: 128 TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
                  +     LT +  S N ++        ++ K L  L+   N ++
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITE----LDVSQNKLLNRLNCDTNNIT 204

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126
             +  ++L  L L     +  +     +L +L  L L  N +S    + L +L QL    
Sbjct: 85  PLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLY 140

Query: 127 L-TCSIS--SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L    I+  + +  L  L  +SL  N +S    +     L  L+ L LS N +S
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 67  GFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK 126
             ++  S+  +   + + + S+      L  +  L L+ N L+  I   L+NL+ L    
Sbjct: 41  TQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLF 96

Query: 127 LT-CSIS--SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L    +   S + +L  L  +SL  N +S   ++     L  LE L L  NK++
Sbjct: 97  LDENKVKDLSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 53  NLCGNDFNYSKIS--YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG 110
           NL     + +K+         + L  L+L H      I     +L QL  L L +N ++ 
Sbjct: 91  NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT- 147

Query: 111 HIPSSLSNLEQLREKKLT-CSIS--SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE 167
              + LS L +L    L    IS    +  L  L  + LS N++S    L     LK+L+
Sbjct: 148 -DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD---LRALAGLKNLD 203

Query: 168 VLDLSYNKLS 177
           VL+L   +  
Sbjct: 204 VLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 94  NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-CSISS--CIFELVNLTKVSLSSNN 150
              + +  +L    ++     + + L  + +       I S   I  L N+TK+ L+ N 
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 79

Query: 151 LSSNVELYMFTKLKSLEVLDLSYNKLS 177
           L+    +     LK+L  L L  NK+ 
Sbjct: 80  LTD---IKPLANLKNLGWLFLDENKVK 103

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 12/108 (11%)

Query: 75  TILNLRHYNFRGSIPPS-FCNLTQLMHLDLSSNILSGHIPS----SLSNLEQLR--EKKL 127
           T L L   N   S+P   F  LTQL  L LS N +   +P      L+ L  L   E KL
Sbjct: 31  TRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKL 88

Query: 128 TCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
             S+ + +F+ L  L +++L +N L S V   +F +L SL+ + L  N
Sbjct: 89  Q-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 73  SLTILNLR-HYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE-KKLT-- 128
           ++  L L    +  G I         L  L L +  L      S+SNL +L + KKL   
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKLELS 79

Query: 129 ----CSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
                     + E L NLT ++LS N L     L    KL+ L+ LDL   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 30/176 (17%)

Query: 26  NSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR 85
           N+F    K+L+    + +   L +          +    S   +     ++L L++ + R
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAAT----TTHISLDHHSMTLTPDEVKSLL-LKYLDCR 314

Query: 86  -GSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSC---------- 134
              +P      T    L + +  +     ++  N + +   KLT  I S           
Sbjct: 315 PQDLPREVLT-TNPRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 135 -------IF-ELVNLTKVSLSS--NNLSSNVELYMFTKL--KSLEVLDLSYNKLSL 178
                  +F    ++  + LS    ++  +  + +  KL   SL       + +S+
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.76
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.74
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.69
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.69
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.5
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.43
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.99
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.66
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.45
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.91

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.5e-21  Score=141.33  Aligned_cols=154  Identities=25%  Similarity=0.216  Sum_probs=129.4

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+.+..+           ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+..
T Consensus        35 ~~l~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  102 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSD-----------ATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGV  102 (251)
T ss_dssp             TTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CCCCEEEccCCCcCccCH-----------hHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhH
Confidence            467888999998887666           67899999999999999998 566777899999999999999999777778


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL  166 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L  166 (179)
                      |..+++|++|++++|.+.+..+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+.+ ++...+..+++|
T Consensus       103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  181 (251)
T 3m19_A          103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKL  181 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred             hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCC
Confidence            89999999999999999866666678888888865553     344467888999999999999998 444445559999


Q ss_pred             cEEEccCCcccc
Q 042092          167 EVLDLSYNKLSL  178 (179)
Q Consensus       167 ~~L~l~~n~l~~  178 (179)
                      +.|++++|++++
T Consensus       182 ~~L~l~~N~~~c  193 (251)
T 3m19_A          182 QTITLFGNQFDC  193 (251)
T ss_dssp             CEEECCSCCBCT
T ss_pred             CEEEeeCCceeC
Confidence            999999999875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=1.1e-21  Score=164.23  Aligned_cols=82  Identities=35%  Similarity=0.438  Sum_probs=50.5

Q ss_pred             CCccEEEcCCCccCCCCCCcCCCCccccc-----ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEE
Q 042092           96 TQLMHLDLSSNILSGHIPSSLSNLEQLRE-----KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLD  170 (179)
Q Consensus        96 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~-----~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  170 (179)
                      ++|+++++++|.+.+.+|..++.++.|+.     +.+++.+|..++.+++|++|++++|++++.+|..+.. +++|++|+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~  710 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA-LTMLTEID  710 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG-CCCCSEEE
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEE
Confidence            44555666666665556666665555554     3344556666666666666666666666656655444 66677777


Q ss_pred             ccCCcccc
Q 042092          171 LSYNKLSL  178 (179)
Q Consensus       171 l~~n~l~~  178 (179)
                      +++|+++|
T Consensus       711 ls~N~l~g  718 (768)
T 3rgz_A          711 LSNNNLSG  718 (768)
T ss_dssp             CCSSEEEE
T ss_pred             CcCCcccc
Confidence            77776665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=1.5e-20  Score=139.55  Aligned_cols=156  Identities=23%  Similarity=0.186  Sum_probs=122.9

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ....++|+.|++++|.+.+ ++            .+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++.
T Consensus        59 l~~l~~L~~L~l~~n~l~~-~~------------~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~  124 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHD-IS------------ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL  124 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCC-CG------------GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             cccCCCCcEEECCCCCCCC-ch------------hhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCcc
Confidence            4456778888888888774 33            6788889999999999987 45666678899999999999999877


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTK  162 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  162 (179)
                      .+..+..+++|++|++++|.+.+..+..+..+++|+.+.+.     +..+..+..+++|++|++++|.+.+..+ ..+..
T Consensus       125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~  203 (272)
T 3rfs_A          125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDR  203 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTT
T ss_pred             CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhC
Confidence            67778889999999999999886666667888888875554     3344456778899999999999998444 44455


Q ss_pred             CCCCcEEEccCCcccc
Q 042092          163 LKSLEVLDLSYNKLSL  178 (179)
Q Consensus       163 l~~L~~L~l~~n~l~~  178 (179)
                      +++|+.|++++|++++
T Consensus       204 l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          204 LTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             CTTCCEEECCSSCBCC
T ss_pred             CcCCCEEEccCCCccc
Confidence            9999999999998875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.85  E-value=1.8e-21  Score=147.36  Aligned_cols=79  Identities=23%  Similarity=0.415  Sum_probs=37.1

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..++
T Consensus        95 ~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  173 (313)
T 1ogq_A           95 PAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             GGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             hhHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence            34444444444444444443 23344444444555555555544444444444445555555555544444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=3.2e-20  Score=137.63  Aligned_cols=155  Identities=23%  Similarity=0.209  Sum_probs=91.5

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP   89 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   89 (179)
                      ..++|+.|++++|.++...+           ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+
T Consensus        59 ~l~~L~~L~l~~n~l~~i~~-----------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~  126 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQTLPA-----------GIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP  126 (270)
T ss_dssp             SCTTCCEEECCSSCCSCCCT-----------TTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CCCCCCEEECCCCccCeeCh-----------hhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCH
Confidence            34455555555555542222           33455666666666666665 3344445666666666666666665555


Q ss_pred             ccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092           90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK  164 (179)
Q Consensus        90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  164 (179)
                      ..|..+++|++|++++|.+.+..+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+.+ ++...+..++
T Consensus       127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~  205 (270)
T 2o6q_A          127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLE  205 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCT
T ss_pred             HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhcccc
Confidence            5566666677777777666644444466666666644433     223345666777777777777776 4443344477


Q ss_pred             CCcEEEccCCccc
Q 042092          165 SLEVLDLSYNKLS  177 (179)
Q Consensus       165 ~L~~L~l~~n~l~  177 (179)
                      +|+.|++++|+++
T Consensus       206 ~L~~L~l~~N~~~  218 (270)
T 2o6q_A          206 KLKMLQLQENPWD  218 (270)
T ss_dssp             TCCEEECCSSCBC
T ss_pred             CCCEEEecCCCee
Confidence            7777777777764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=2.2e-20  Score=139.28  Aligned_cols=135  Identities=21%  Similarity=0.195  Sum_probs=73.5

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..++
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             HHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence            34444555555555555554 23344445555555555555555544444455555555555555555533333455555


Q ss_pred             ccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          121 QLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       121 ~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +|+.+.+.+     ..+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|+++
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence            555533332     334556666677777777777776 33333344777777777777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=1.8e-20  Score=139.82  Aligned_cols=157  Identities=21%  Similarity=0.156  Sum_probs=106.9

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCcc-ccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGND-FNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ...++|+.|++++|.+++..+           ..+..+++|++|++++|. +. ...+..+..+++|++|++++|.+++.
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~  120 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDA-----------AAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQEL  120 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             ccCCCCCEEECCCCccceeCH-----------hhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEE
Confidence            344566666666666654444           566777777777777776 54 34456677777777777777777766


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC-----ccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS-----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTK  162 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  162 (179)
                      .+..+..+++|+++++++|.+....+..+..+++|+.+.+.+.     .+..+..+++|++|++++|.+.+..+..+.. 
T Consensus       121 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-  199 (285)
T 1ozn_A          121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD-  199 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-
T ss_pred             CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC-
Confidence            6666777777778887777777555555777777777555532     2334666778888888888887754554444 


Q ss_pred             CCCCcEEEccCCcccc
Q 042092          163 LKSLEVLDLSYNKLSL  178 (179)
Q Consensus       163 l~~L~~L~l~~n~l~~  178 (179)
                      +++|+.|++++|.+++
T Consensus       200 l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          200 LGRLMTLYLFANNLSA  215 (285)
T ss_dssp             CTTCCEEECCSSCCSC
T ss_pred             cccccEeeCCCCcCCc
Confidence            8888888888887765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.85  E-value=2.9e-21  Score=146.22  Aligned_cols=152  Identities=28%  Similarity=0.353  Sum_probs=127.1

Q ss_pred             cCceeeecccccCCC--CCCcchhhhheecccchhccccceEEEeeC-ccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092           12 CAFMNRLLHYSCLSN--SFPSRKKLLIFALNESLFFILHSQNLNLCG-NDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      .+++.|++++|.+.+  .+|           ..+..+++|++|++++ |.+. ...+..+..+++|++|++++|.+++..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~-----------~~l~~l~~L~~L~L~~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~  117 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIP-----------SSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECC-----------GGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             ceEEEEECCCCCccCCcccC-----------hhHhCCCCCCeeeCCCCCccc-ccCChhHhcCCCCCEEECcCCeeCCcC
Confidence            689999999999998  788           8999999999999995 8887 467888999999999999999999888


Q ss_pred             CccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCC-cccEEEcCCCccCCchhhHhhcC
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELV-NLTKVSLSSNNLSSNVELYMFTK  162 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~  162 (179)
                      |..+..+++|++|++++|.+.+.+|..+..+++|+.+.+.     +.+|..+..++ .|++|++++|.+.+.+|..+.. 
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-  196 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-  196 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-
T ss_pred             CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-
Confidence            9999999999999999999998899999999999885554     45677777776 7888888888887655554443 


Q ss_pred             CCCCcEEEccCCccc
Q 042092          163 LKSLEVLDLSYNKLS  177 (179)
Q Consensus       163 l~~L~~L~l~~n~l~  177 (179)
                      +. |+.|++++|.++
T Consensus       197 l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          197 LN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CC-CSEEECCSSEEE
T ss_pred             Cc-ccEEECcCCccc
Confidence            44 666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.7e-20  Score=142.82  Aligned_cols=134  Identities=21%  Similarity=0.206  Sum_probs=78.3

Q ss_pred             cchhccccceEEEeeCccccCCccccccc---------CCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCC
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFS---------QFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH  111 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---------~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~  111 (179)
                      ..+..+++|++|++++|.+. ...+..+.         ++++|++|++++|.++ .+|..+..+++|++|++++|.+. .
T Consensus       144 ~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~  220 (328)
T 4fcg_A          144 ASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A  220 (328)
T ss_dssp             GGGGGCTTCCEEEEEEETTC-CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C
T ss_pred             HHHhcCcCCCEEECCCCCCc-cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c
Confidence            44555555555555555443 22333222         2555555555555555 45555666666666666666666 3


Q ss_pred             CCCcCCCCcccccccc-----cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          112 IPSSLSNLEQLREKKL-----TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       112 ~~~~~~~l~~L~~~~l-----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +|..+..+++|+.+.+     .+.+|..+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|++.|
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCC
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchh
Confidence            4555666666655333     3345666666777777777777766666655444 7777777777776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=5.9e-20  Score=136.14  Aligned_cols=154  Identities=22%  Similarity=0.213  Sum_probs=124.6

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..|..+++|++|++++|.++...+..
T Consensus        37 ~~l~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~  104 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPS-----------KAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGV  104 (270)
T ss_dssp             TTCSEEECCSSCCSCCCT-----------TSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCEEECcCCCCCeeCH-----------HHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhH
Confidence            357777787777775444           57888999999999999997 455666788999999999999999776677


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC-----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS-----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL  166 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L  166 (179)
                      +..+++|++|++++|.+.+..+..+..+++|+.+.+.+.     .+..+..+++|++|++++|.+.+ ++...+..+++|
T Consensus       105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  183 (270)
T 2o6q_A          105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTEL  183 (270)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred             cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-eChhHhccCCCc
Confidence            888999999999999998777777888898888666542     33446788999999999999998 444445559999


Q ss_pred             cEEEccCCcccc
Q 042092          167 EVLDLSYNKLSL  178 (179)
Q Consensus       167 ~~L~l~~n~l~~  178 (179)
                      ++|++++|.+++
T Consensus       184 ~~L~L~~N~l~~  195 (270)
T 2o6q_A          184 KTLKLDNNQLKR  195 (270)
T ss_dssp             CEEECCSSCCSC
T ss_pred             CEEECCCCcCCc
Confidence            999999998864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.84  E-value=2e-20  Score=156.69  Aligned_cols=155  Identities=28%  Similarity=0.289  Sum_probs=134.2

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      .+.|+.|++++|.+++.+|           ..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+.+..|.
T Consensus       393 ~~~L~~L~L~~n~l~~~~p-----------~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  460 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIP-----------PTLSNCSELVSLHLSFNYLS-GTIPSSLGSLSKLRDLKLWLNMLEGEIPQ  460 (768)
T ss_dssp             TCCCCEEECCSSEEEEECC-----------GGGGGCTTCCEEECCSSEEE-SCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cCCccEEECCCCccccccC-----------HHHhcCCCCCEEECcCCccc-CcccHHHhcCCCCCEEECCCCcccCcCCH
Confidence            3456666666666666666           78899999999999999998 46788899999999999999999989999


Q ss_pred             cccCCCCccEEEcCCCccCCCCCCcCCCCccccccc-----ccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK-----LTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~-----l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      .+..+++|+++++++|.+.+.+|..+..+++|+.+.     +.+..|..++.+++|++|++++|.+.+.+|..+.. +++
T Consensus       461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~  539 (768)
T 3rgz_A          461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRS  539 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTT
T ss_pred             HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCC
Confidence            999999999999999999988999999999888744     45678888999999999999999999878877666 999


Q ss_pred             CcEEEccCCcccc
Q 042092          166 LEVLDLSYNKLSL  178 (179)
Q Consensus       166 L~~L~l~~n~l~~  178 (179)
                      |+.|++++|+++|
T Consensus       540 L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          540 LIWLDLNTNLFNG  552 (768)
T ss_dssp             CCEEECCSSEEES
T ss_pred             CCEEECCCCccCC
Confidence            9999999999886

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=2.5e-19  Score=136.43  Aligned_cols=153  Identities=16%  Similarity=0.175  Sum_probs=127.2

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccchh---------ccccceEEEeeCccccCCcccccccCCCCccEEEec
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLF---------FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLR   80 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~---------~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~   80 (179)
                      .+++|+.|++++|.+.+.+|           ..+.         .+++|++|++++|.++  ..+..+..+++|++|+++
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p-----------~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~  214 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELP-----------EPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIR  214 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCC-----------SCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEE
T ss_pred             cCcCCCEEECCCCCCccccC-----------hhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEcc
Confidence            34455555555555544444           4444         4999999999999997  567779999999999999


Q ss_pred             cCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc-----cCCccccccCCCcccEEEcCCCccCCch
Q 042092           81 HYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL-----TCSISSCIFELVNLTKVSLSSNNLSSNV  155 (179)
Q Consensus        81 ~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l-----~~~~~~~~~~~~~L~~L~l~~n~~~~~~  155 (179)
                      +|.++ ..|+.+..+++|++|++++|.+.+.+|..+..+++|+.+.+     .+.+|..+..+++|++|++++|.+.+.+
T Consensus       215 ~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             SSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             CCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            99999 56778999999999999999998899999999999988555     4567888999999999999999999989


Q ss_pred             hhHhhcCCCCCcEEEccCCccc
Q 042092          156 ELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      |..+.. +++++.+++..+.+.
T Consensus       294 P~~l~~-L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          294 PSLIAQ-LPANCIILVPPHLQA  314 (328)
T ss_dssp             CGGGGG-SCTTCEEECCGGGSC
T ss_pred             cHHHhh-ccCceEEeCCHHHHH
Confidence            988777 999999999887664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=4.2e-19  Score=130.23  Aligned_cols=152  Identities=26%  Similarity=0.267  Sum_probs=127.1

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      ....+.++++++.++ .+|           ..+.  +.++.|++++|.++ ...+..+.++++|++|++++|.+++..+.
T Consensus        13 ~~~~~~l~~~~~~l~-~~p-----------~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   77 (251)
T 3m19_A           13 NEGKKEVDCQGKSLD-SVP-----------SGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAG   77 (251)
T ss_dssp             EGGGTEEECTTCCCS-SCC-----------SCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCCeEEecCCCCcc-ccC-----------CCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence            356788999999998 666           4443  68999999999998 56677799999999999999999988888


Q ss_pred             cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      .+..+++|++|++++|.+.+..+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+.+ ++...+..+++
T Consensus        78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~  156 (251)
T 3m19_A           78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTN  156 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcC
Confidence            899999999999999999977677888899998866654     334456788999999999999998 54444455999


Q ss_pred             CcEEEccCCcccc
Q 042092          166 LEVLDLSYNKLSL  178 (179)
Q Consensus       166 L~~L~l~~n~l~~  178 (179)
                      |++|++++|.+++
T Consensus       157 L~~L~L~~N~l~~  169 (251)
T 3m19_A          157 LQTLSLSTNQLQS  169 (251)
T ss_dssp             CCEEECCSSCCSC
T ss_pred             CCEEECCCCcCCc
Confidence            9999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=5.7e-19  Score=131.03  Aligned_cols=154  Identities=25%  Similarity=0.249  Sum_probs=129.4

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ....++|+.+++++|.+. .++            .+..+++|++|++++|.+++  . ..+..+++|++|++++|.+++.
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~~------------~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~n~l~~~  100 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SVQ------------GIQYLPNVRYLALGGNKLHD--I-SALKELTNLTYLILTGNQLQSL  100 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CCT------------TGGGCTTCCEEECTTSCCCC--C-GGGTTCTTCCEEECTTSCCCCC
T ss_pred             cccccceeeeeeCCCCcc-ccc------------ccccCCCCcEEECCCCCCCC--c-hhhcCCCCCCEEECCCCccCcc
Confidence            345688999999999987 444            58889999999999999973  3 3688999999999999999977


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTK  162 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  162 (179)
                      .+..+..+++|++|++++|.+.+..+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+++ ++...+..
T Consensus       101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~  179 (272)
T 3rfs_A          101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDK  179 (272)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred             ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcC
Confidence            777789999999999999999977677788899998866553     344456788999999999999998 54444555


Q ss_pred             CCCCcEEEccCCcccc
Q 042092          163 LKSLEVLDLSYNKLSL  178 (179)
Q Consensus       163 l~~L~~L~l~~n~l~~  178 (179)
                      +++|++|++++|.+++
T Consensus       180 l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTCCEEECCSSCCSC
T ss_pred             CccCCEEECCCCcCCc
Confidence            9999999999999876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=6.1e-19  Score=127.87  Aligned_cols=151  Identities=26%  Similarity=0.243  Sum_probs=111.9

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      |.-+.++.+++.++ .+|           ..+  .+++++|++++|.++ ...+..+..+++|+.|++++|.++...+..
T Consensus        19 Cs~~~v~c~~~~l~-~ip-----------~~~--~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~   83 (229)
T 3e6j_A           19 CSGTTVDCRSKRHA-SVP-----------AGI--PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGV   83 (229)
T ss_dssp             EETTEEECTTSCCS-SCC-----------SCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             EeCCEeEccCCCcC-ccC-----------CCC--CCCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhh
Confidence            34556777777776 555           333  377888888888887 455667778888888888888887555566


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE  167 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  167 (179)
                      |..+++|++|++++|.+.+..+..+..+++|+.+.+.+    .+|..+..+++|++|++++|.+.+ ++...+..+++|+
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~  162 (229)
T 3e6j_A           84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLT  162 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCC
Confidence            77788888888888888755556677777777755553    456667778899999999999987 4444455589999


Q ss_pred             EEEccCCcccc
Q 042092          168 VLDLSYNKLSL  178 (179)
Q Consensus       168 ~L~l~~n~l~~  178 (179)
                      .|++++|++++
T Consensus       163 ~L~l~~N~~~c  173 (229)
T 3e6j_A          163 HAYLFGNPWDC  173 (229)
T ss_dssp             EEECTTSCBCT
T ss_pred             EEEeeCCCccC
Confidence            99999998864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=2.2e-19  Score=129.45  Aligned_cols=148  Identities=22%  Similarity=0.234  Sum_probs=118.9

Q ss_pred             ceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcccc
Q 042092           14 FMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC   93 (179)
Q Consensus        14 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   93 (179)
                      -+.++.+++.++ .+|           ..+.  +.+++|++++|.++ ...+..|..+++|+.|++++|.++...|..|.
T Consensus        13 ~~~v~c~~~~l~-~iP-----------~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~   77 (220)
T 2v9t_B           13 NNIVDCRGKGLT-EIP-----------TNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ   77 (220)
T ss_dssp             TTEEECTTSCCS-SCC-----------SSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCEEEcCCCCcC-cCC-----------CccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence            367888888887 566           4342  67899999999987 45566788899999999999999877788899


Q ss_pred             CCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcE
Q 042092           94 NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEV  168 (179)
Q Consensus        94 ~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  168 (179)
                      .+++|++|++++|.+....+..+..+++|+.+.+.     +..+..+..+++|++|++++|.+.+ ++...+..+++|+.
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQT  156 (220)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCE
T ss_pred             CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCE
Confidence            99999999999999985555567788888875554     4456678888999999999999998 44444555999999


Q ss_pred             EEccCCccc
Q 042092          169 LDLSYNKLS  177 (179)
Q Consensus       169 L~l~~n~l~  177 (179)
                      |++++|+++
T Consensus       157 L~L~~N~~~  165 (220)
T 2v9t_B          157 MHLAQNPFI  165 (220)
T ss_dssp             EECCSSCEE
T ss_pred             EEeCCCCcC
Confidence            999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=3.5e-19  Score=133.45  Aligned_cols=131  Identities=27%  Similarity=0.286  Sum_probs=63.2

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+..+++|++|++++|.++ . .+. ...+++|++|++++|.++ .+|..+..+++|++|++++|.+....+..+..++
T Consensus        49 ~~~~~l~~L~~L~L~~n~l~-~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~  124 (290)
T 1p9a_G           49 ATLMPYTRLTQLNLDRAELT-K-LQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG  124 (290)
T ss_dssp             GGGTTCTTCCEEECTTSCCC-E-EEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT
T ss_pred             HHhhcCCCCCEEECCCCccC-c-ccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC
Confidence            44555566666666666554 1 221 144555555555555555 4444445555555555555555533334455555


Q ss_pred             ccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092          121 QLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL  176 (179)
Q Consensus       121 ~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  176 (179)
                      +|+.+.+.+     ..+..+..+++|+.|++++|.+++ ++...+..+++|+.|++++|.+
T Consensus       125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcC
Confidence            555433322     122233444555555555555554 3333333355555555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=2.1e-19  Score=129.64  Aligned_cols=151  Identities=20%  Similarity=0.203  Sum_probs=120.7

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF   92 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   92 (179)
                      .-+.+++++|.++ .+|           ..+  ...+++|++++|.+++......|..+++|+.|++++|.+++..+..|
T Consensus        12 ~~~~l~~s~n~l~-~iP-----------~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~   77 (220)
T 2v70_A           12 EGTTVDCSNQKLN-KIP-----------EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF   77 (220)
T ss_dssp             ETTEEECCSSCCS-SCC-----------SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCEeEeCCCCcc-cCc-----------cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh
Confidence            3468999999988 566           444  34568999999999732133557899999999999999997777789


Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE  167 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  167 (179)
                      ..+++|++|++++|.+.+..+..+..+++|+.+.+.     +..+..+..+++|++|++++|.+++..|..+. .+++|+
T Consensus        78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~  156 (220)
T 2v70_A           78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD-TLHSLS  156 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-TCTTCC
T ss_pred             CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-CCCCCC
Confidence            999999999999999987767778888888875554     44567788899999999999999995565544 499999


Q ss_pred             EEEccCCcccc
Q 042092          168 VLDLSYNKLSL  178 (179)
Q Consensus       168 ~L~l~~n~l~~  178 (179)
                      .|++++|++++
T Consensus       157 ~L~L~~N~l~c  167 (220)
T 2v70_A          157 TLNLLANPFNC  167 (220)
T ss_dssp             EEECCSCCEEC
T ss_pred             EEEecCcCCcC
Confidence            99999999864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.81  E-value=1.3e-19  Score=136.27  Aligned_cols=136  Identities=22%  Similarity=0.291  Sum_probs=73.9

Q ss_pred             cchhccccceEEEeeCccccCCccc-ccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCC-CCCCcCCC
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKIS-YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG-HIPSSLSN  118 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~-~~~~~~~~  118 (179)
                      ..+..+++|++|++++|.+++ ..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  173 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  173 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEES-STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             hhcCCCCCCCEEECCCCcccc-cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence            345556666666666666652 222 345566666666666666655555555566666666666666553 34555555


Q ss_pred             CcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          119 LEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       119 l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +++|+.+.+.+     ..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|++++
T Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCB
T ss_pred             CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcc
Confidence            55555544332     22344455555666666666655522222 2335555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=1.8e-19  Score=127.68  Aligned_cols=151  Identities=13%  Similarity=0.142  Sum_probs=124.6

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      ...++|+.|++++|.++ .++            .+..+++|++|++++|.++  .. ..+..+++|++|++++|.+++..
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~l~~n~~~--~~-~~l~~l~~L~~L~l~~n~l~~~~  104 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT------------GIEYAHNIKDLTINNIHAT--NY-NPISGLSNLERLRIMGKDVTSDK  104 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT------------TGGGCTTCSEEEEESCCCS--CC-GGGTTCTTCCEEEEECTTCBGGG
T ss_pred             hhcCCccEEeccCCCcc-ChH------------HHhcCCCCCEEEccCCCCC--cc-hhhhcCCCCCEEEeECCccCccc
Confidence            45678999999999998 566            5888999999999999775  23 36889999999999999998777


Q ss_pred             CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc-c---ccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI-S---SCIFELVNLTKVSLSSNNLSSNVELYMFTKLK  164 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~-~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  164 (179)
                      +..+..+++|++|++++|.+.+..+..+..+++|+.+.+.+.. .   ..+..+++|++|++++|.+.+ ++ .+ ..++
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l-~~l~  181 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GI-EDFP  181 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TG-GGCS
T ss_pred             ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-Hh-ccCC
Confidence            8889999999999999999987778888899999987766542 1   257788999999999999998 44 33 4499


Q ss_pred             CCcEEEccCCcccc
Q 042092          165 SLEVLDLSYNKLSL  178 (179)
Q Consensus       165 ~L~~L~l~~n~l~~  178 (179)
                      +|+.|++++|+|.+
T Consensus       182 ~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          182 KLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCCEEEECBC----
T ss_pred             CCCEEEeeCcccCC
Confidence            99999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=8.1e-19  Score=131.48  Aligned_cols=154  Identities=18%  Similarity=0.115  Sum_probs=125.8

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      .+..+++|+.|++++|.+++ ++            ....+++|++|++++|.++  ..+..+..+++|++|++++|+++.
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~-~~------------~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~  114 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTK-LQ------------VDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTS  114 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCE-EE------------CCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCC
T ss_pred             HhhcCCCCCEEECCCCccCc-cc------------CCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcc
Confidence            34556677777777777763 33            2367899999999999996  567778899999999999999997


Q ss_pred             CCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhc
Q 042092           87 SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFT  161 (179)
Q Consensus        87 ~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  161 (179)
                      ..+..|..+++|++|++++|.+....+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+.. +|..++.
T Consensus       115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~  193 (290)
T 1p9a_G          115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFG  193 (290)
T ss_dssp             CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred             cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcc
Confidence            7778899999999999999999966667788888888865553     333456778999999999999997 7777776


Q ss_pred             CCCCCcEEEccCCccc
Q 042092          162 KLKSLEVLDLSYNKLS  177 (179)
Q Consensus       162 ~l~~L~~L~l~~n~l~  177 (179)
                       ..+|+.+++++|++.
T Consensus       194 -~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          194 -SHLLPFAFLHGNPWL  208 (290)
T ss_dssp             -TCCCSEEECCSCCBC
T ss_pred             -cccCCeEEeCCCCcc
Confidence             789999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=5.5e-19  Score=144.23  Aligned_cols=108  Identities=17%  Similarity=0.067  Sum_probs=70.0

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      +..++.|+.|++++|.+++..+           ..+..+++|+.|++++|.++ ...+..|.++++|++|++++|.++..
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l  138 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDT-----------YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL  138 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             HccCCCCcEEECCCCCCCCCCh-----------HHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence            4456677777777777775555           56666777777777777766 34555566677777777777776644


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL  127 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l  127 (179)
                      .+..|..+++|++|++++|.+.+..|..+..+++|+.+.+
T Consensus       139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  178 (597)
T 3oja_B          139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL  178 (597)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence            4444566677777777777766555556666666655333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=3e-19  Score=132.59  Aligned_cols=159  Identities=23%  Similarity=0.229  Sum_probs=101.2

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      .+...++|+.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..+.++++|++|++++|.+..
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~  114 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIED-----------GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS  114 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECT-----------TTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCC
T ss_pred             HhccccCCcEEECCCCcCCccCH-----------HHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccc
Confidence            34456777888888887775444           45666666777777776665 3444556666666666666666664


Q ss_pred             CCCccccCCCCccEEEcCCCccCCC-CCCcCCCCcccccccccCC--------------------------------ccc
Q 042092           87 SIPPSFCNLTQLMHLDLSSNILSGH-IPSSLSNLEQLREKKLTCS--------------------------------ISS  133 (179)
Q Consensus        87 ~~~~~l~~l~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~~~l~~~--------------------------------~~~  133 (179)
                      ..+..+..+++|++|++++|.+.+. +|..+..+++|+.+.+.+.                                ++.
T Consensus       115 ~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~  194 (276)
T 2z62_A          115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP  194 (276)
T ss_dssp             STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred             cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence            4444556666666666666666532 3555555555555333321                                111


Q ss_pred             cccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          134 CIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       134 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      ......+|++|++++|.+++ ++...+..+++|+.|++++|++++
T Consensus       195 ~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          195 GAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TSSCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cccCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCcccc
Confidence            22223478999999999987 555555669999999999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.80  E-value=1.1e-19  Score=143.41  Aligned_cols=130  Identities=26%  Similarity=0.314  Sum_probs=113.1

Q ss_pred             ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccc
Q 042092           47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK  126 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~  126 (179)
                      +.|+++++++|.++ ...+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.+.
T Consensus       275 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            57899999999997 56677789999999999999999988888999999999999999999877788889999998866


Q ss_pred             ccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          127 LTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       127 l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +.+     ..+..+..+++|++|++++|.+++ ++...+..+++|+.|++++|++++
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCccc
Confidence            553     456778889999999999999998 555555669999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=8.8e-19  Score=135.98  Aligned_cols=106  Identities=16%  Similarity=0.051  Sum_probs=63.2

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      +...++|+.|++++|.+.+..+           ..+..+++|++|++++|.++ ...+..+.++++|++|++++|.++..
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l  132 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDT-----------YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL  132 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             hcccccCcEEECCCCcccccCh-----------hhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcC
Confidence            3445667777777777664444           45666666666666666665 34445556666666666666666633


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccc
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK  125 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~  125 (179)
                      .+..|..+++|++|++++|.+.+..+..+..+++|+.+
T Consensus       133 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  170 (390)
T 3o6n_A          133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  170 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred             CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence            33334566666666666666654445555555555553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.80  E-value=4.1e-19  Score=141.12  Aligned_cols=154  Identities=19%  Similarity=0.169  Sum_probs=123.0

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ..++.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.++...+..
T Consensus        32 ~~l~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   99 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQ-----------DEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGV   99 (477)
T ss_dssp             TTCSEEECCSSCCCEECT-----------TTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred             CCCcEEECCCCccceECH-----------hHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCccc
Confidence            467889999999886666           67888999999999999887 456778889999999999999988666667


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL  166 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L  166 (179)
                      |..+++|++|++++|.+.+..+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+.+ ++...+..+++|
T Consensus       100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L  178 (477)
T 2id5_A          100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGL  178 (477)
T ss_dssp             STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTC
T ss_pred             ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCC
Confidence            88889999999999998877788888888888866554     345567788889999999988887 444444458888


Q ss_pred             cEEEccCCcccc
Q 042092          167 EVLDLSYNKLSL  178 (179)
Q Consensus       167 ~~L~l~~n~l~~  178 (179)
                      +.|++++|.+++
T Consensus       179 ~~L~l~~n~i~~  190 (477)
T 2id5_A          179 IVLRLRHLNINA  190 (477)
T ss_dssp             CEEEEESCCCCE
T ss_pred             cEEeCCCCcCcE
Confidence            888888877653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=3.3e-19  Score=132.39  Aligned_cols=153  Identities=22%  Similarity=0.221  Sum_probs=123.0

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+..
T Consensus        28 ~~l~~L~ls~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS-----------YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             TTCCEEECTTCCCCEECT-----------TTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CCccEEECCCCcccccCH-----------hHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            469999999999986555           67889999999999999997 456667899999999999999999777788


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      +..+++|+++++++|.+.+..+..+..+++|+.+.+.+      .+|..+..+++|++|++++|.+.+..+..+.. +++
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~  174 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ  174 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence            99999999999999999866666788889998866653      25778888999999999999998844433322 333


Q ss_pred             Cc----EEEccCCccc
Q 042092          166 LE----VLDLSYNKLS  177 (179)
Q Consensus       166 L~----~L~l~~n~l~  177 (179)
                      |+    .|++++|.++
T Consensus       175 L~~l~l~L~ls~n~l~  190 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMN  190 (276)
T ss_dssp             CTTCCEEEECCSSCCC
T ss_pred             ccccceeeecCCCccc
Confidence            33    5556555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=2.3e-19  Score=137.62  Aligned_cols=136  Identities=20%  Similarity=0.189  Sum_probs=73.4

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC-ccccCCCCccEEEcCCC-ccCCCCCCcCCC
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP-PSFCNLTQLMHLDLSSN-ILSGHIPSSLSN  118 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~l~l~~n-~l~~~~~~~~~~  118 (179)
                      ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+ ..+..+++|+++++++| .+....+..+..
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            34555555555555555554 2333334555555555555555553222 24455555555555555 233333444555


Q ss_pred             Cccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          119 LEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       119 l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +++|+.+.+.     +..+..+..+++|++|++++|.+.. ++..+...+++|+.|++++|.+++
T Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCcccc
Confidence            5555543332     2335556666667777777777655 444444447777777777777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=4.5e-19  Score=126.49  Aligned_cols=129  Identities=29%  Similarity=0.280  Sum_probs=65.1

Q ss_pred             cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092           48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL  127 (179)
Q Consensus        48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l  127 (179)
                      ++++|++++|.++ ...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+.+.+
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4555555555554 233333445555555555555555433334445555555555555555333333444555544333


Q ss_pred             cC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          128 TC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       128 ~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      .+     ..+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|++++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec
Confidence            22     222234455666666666666665 333333346666666666666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=3.4e-19  Score=134.08  Aligned_cols=135  Identities=20%  Similarity=0.247  Sum_probs=115.3

Q ss_pred             chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC-CCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG-SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      .+..+++|++|++++|.+. ...+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..++
T Consensus       121 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  199 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  199 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence            6788999999999999997 4667778899999999999999885 5788899999999999999999977788899999


Q ss_pred             ccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCC-CCCcEEEccCCcccc
Q 042092          121 QLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL-KSLEVLDLSYNKLSL  178 (179)
Q Consensus       121 ~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~  178 (179)
                      +|+.+.+.+     ..+..+..+++|++|++++|.+.+..+..+.. + ++|+.|++++|++++
T Consensus       200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC-CCTTCCEEECTTCCEEC
T ss_pred             CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh-hhccCCEEEccCCCeec
Confidence            998866654     33446778899999999999999866665555 6 489999999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=1.2e-19  Score=149.22  Aligned_cols=159  Identities=16%  Similarity=0.153  Sum_probs=127.1

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccc------cC-------------------
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDF------NY-------------------   61 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i------~~-------------------   61 (179)
                      .|....+++.|+|+++.+.|.+|           +.++.+++|+.|++++|.+      .+                   
T Consensus        76 ~C~~~~~V~~L~L~~~~l~g~lp-----------~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~  144 (636)
T 4eco_A           76 SLNSNGRVTGLSLEGFGASGRVP-----------DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH  144 (636)
T ss_dssp             EECTTCCEEEEECTTSCCEEEEC-----------GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTH
T ss_pred             EEcCCCCEEEEEecCcccCCcCC-----------hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhh
Confidence            45445789999999999998888           8899999999999988854      00                   


Q ss_pred             ---------------------------------------------------CcccccccCCCCccEEEeccCCCCCC---
Q 042092           62 ---------------------------------------------------SKISYGFSQFRSLTILNLRHYNFRGS---   87 (179)
Q Consensus        62 ---------------------------------------------------~~~~~~~~~l~~L~~L~l~~~~l~~~---   87 (179)
                                                                         ...|..+.++++|++|++++|.+++.   
T Consensus       145 l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~  224 (636)
T 4eco_A          145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC  224 (636)
T ss_dssp             HHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred             HHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccccc
Confidence                                                               01456678889999999999998864   


Q ss_pred             --------------CCcccc--CCCCccEEEcCCCccCCCCCCcCCCCccccccccc------C-CccccccCC------
Q 042092           88 --------------IPPSFC--NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT------C-SISSCIFEL------  138 (179)
Q Consensus        88 --------------~~~~l~--~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~------~-~~~~~~~~~------  138 (179)
                                    +|..++  .+++|++|++++|.+.+.+|..+..+++|+.+.+.      + .+|..++.+      
T Consensus       225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l  304 (636)
T 4eco_A          225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG  304 (636)
T ss_dssp             SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred             ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence                          788888  89999999999999888889889988888885554      3 456666655      


Q ss_pred             CcccEEEcCCCccCCchhh--HhhcCCCCCcEEEccCCcccc
Q 042092          139 VNLTKVSLSSNNLSSNVEL--YMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       139 ~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      ++|++|++++|.+.. +|.  .+.. +++|++|++++|.++|
T Consensus       305 ~~L~~L~L~~n~l~~-ip~~~~l~~-l~~L~~L~L~~N~l~g  344 (636)
T 4eco_A          305 EKIQIIYIGYNNLKT-FPVETSLQK-MKKLGMLECLYNQLEG  344 (636)
T ss_dssp             GTCCEEECCSSCCSS-CCCHHHHTT-CTTCCEEECCSCCCEE
T ss_pred             CCCCEEECCCCcCCc-cCchhhhcc-CCCCCEEeCcCCcCcc
Confidence            889999999999985 766  4444 8999999999998875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=1.5e-18  Score=137.21  Aligned_cols=86  Identities=19%  Similarity=0.095  Sum_probs=47.7

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+++..+           ..+..+++|+.|++++|.++ ...+..|.++++|++|++++|.++...+..
T Consensus        75 ~~l~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  142 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQA-----------DTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGA  142 (452)
T ss_dssp             TTCSEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred             CCccEEECcCCcCceECH-----------HHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhh
Confidence            355666666666664444           45555555666666665554 334445555555555555555555444444


Q ss_pred             ccCCCCccEEEcCCCccC
Q 042092           92 FCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~  109 (179)
                      |..+++|++|++++|.+.
T Consensus       143 ~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             SSSCTTCCEEECCSCCCC
T ss_pred             hcccCCCCEEECCCCCcc
Confidence            555555555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=1.6e-18  Score=136.71  Aligned_cols=43  Identities=23%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             cccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          134 CIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       134 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      .+..+++|++|++++|.+.+..+. .+..+++|+.|++++|+++
T Consensus       226 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          226 SFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTT-SSTTCTTCCEEECTTSCCC
T ss_pred             hhccCccCCEEECCCCceeEEChh-hhcCCCCCCEEECCCCCCC
Confidence            344444455555555555442222 2233555666666665554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.78  E-value=4.1e-19  Score=140.13  Aligned_cols=136  Identities=19%  Similarity=0.128  Sum_probs=110.0

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ++++.|++++|.+++..|           ..+..+++|++|++++|.+.+...+..|.++++|++|++++|.+++..|..
T Consensus        30 ~~l~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   98 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNE-----------TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA   98 (455)
T ss_dssp             TTCCEEECCSSCCCEECT-----------TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred             CccCEEEecCCccCcCCh-----------hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence            578999999999987667           788999999999999998864444677889999999999999998777888


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCc--CCCCcccccccccC-----Ccccc-ccCCCcccEEEcCCCccCCchhhH
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSS--LSNLEQLREKKLTC-----SISSC-IFELVNLTKVSLSSNNLSSNVELY  158 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~--~~~l~~L~~~~l~~-----~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~  158 (179)
                      +..+++|++|++++|.+.+..+..  +..+++|+.+.+.+     ..|.. +..+++|++|++++|.+.+..+..
T Consensus        99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  173 (455)
T 3v47_A           99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED  173 (455)
T ss_dssp             TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred             ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence            999999999999999987644443  77888888755543     34544 678889999999999988755543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=1.8e-18  Score=136.41  Aligned_cols=157  Identities=25%  Similarity=0.287  Sum_probs=112.5

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCcccc------------------------CC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFN------------------------YS   62 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~------------------------~~   62 (179)
                      .+..+++|+.|++++|.++...+           ..+..+++|++|++++|.++                        ..
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~  175 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLTTIPN-----------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY  175 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCSSCCT-----------TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred             hccCCccCCEEECCCCcCCeeCH-----------hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence            45566778888888887774433           34555555555555555543                        12


Q ss_pred             cccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccC
Q 042092           63 KISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFE  137 (179)
Q Consensus        63 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~  137 (179)
                      ..+..|.++++|++|++++|.++ ..| .+..+++|++|++++|.+.+..|..+..+++|+.+.+.     +..+..+..
T Consensus       176 i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence            22334566777777777777776 334 36677888888888888887778888888888875554     345667788


Q ss_pred             CCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          138 LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       138 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +++|++|++++|.+++ ++...+..+++|+.|++++|++.
T Consensus       254 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECTTSCCCC-CCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCCEEECCCCCCCc-cChhHhccccCCCEEEcCCCCcc
Confidence            9999999999999998 55555666999999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=8.4e-18  Score=119.88  Aligned_cols=148  Identities=24%  Similarity=0.169  Sum_probs=122.1

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ++++.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++...+..
T Consensus        28 ~~l~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   95 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPN-----------GVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGV   95 (208)
T ss_dssp             TTCSEEECCSSCCCCCCT-----------TTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcEEEcCCCccCcCCh-----------hhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence            578999999999986555           56788999999999999997 456666789999999999999999776667


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL  166 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L  166 (179)
                      +..+++|+++++++|.+.+..+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+.+        .+++|
T Consensus        96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l  167 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGI  167 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTT
T ss_pred             hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCH
Confidence            88999999999999999866666788888888866553     334457788999999999998875        25667


Q ss_pred             cEEEccCCccccC
Q 042092          167 EVLDLSYNKLSLC  179 (179)
Q Consensus       167 ~~L~l~~n~l~~~  179 (179)
                      +.|+++.|.++|.
T Consensus       168 ~~L~~~~n~~~g~  180 (208)
T 2o6s_A          168 RYLSEWINKHSGV  180 (208)
T ss_dssp             HHHHHHHHHCTTT
T ss_pred             HHHHHHHHhCCce
Confidence            7788888877763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=6.1e-19  Score=133.29  Aligned_cols=155  Identities=19%  Similarity=0.134  Sum_probs=109.0

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccch--hccccceEEEeeCccccCCcccccccCC-----CCccEEEeccC
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESL--FFILHSQNLNLCGNDFNYSKISYGFSQF-----RSLTILNLRHY   82 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~~l-----~~L~~L~l~~~   82 (179)
                      ..++|++|++++|.+++.+|           ..+  ..+++|++|++++|.+++ . +..+..+     ++|++|++++|
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~-~-~~~~~~l~~~~~~~L~~L~L~~N  159 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAP-----------PPLLEATGPDLNILNLRNVSWAT-R-DAWLAELQQWLKPGLKVLSIAQA  159 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCC-----------CCSSSCCSCCCSEEEEESCBCSS-S-SSHHHHHHTTCCTTCCEEEEESC
T ss_pred             CcCCccEEEccCCcccchhH-----------HHHHHhcCCCccEEEccCCCCcc-h-hHHHHHHHHhhcCCCcEEEeeCC
Confidence            46788999999999888777           555  778888999999998873 3 5556655     88889999998


Q ss_pred             CCCCCCCccccCCCCccEEEcCCCccCCC--CCCcC--CCCcccccccccCCccc--------cccCCCcccEEEcCCCc
Q 042092           83 NFRGSIPPSFCNLTQLMHLDLSSNILSGH--IPSSL--SNLEQLREKKLTCSISS--------CIFELVNLTKVSLSSNN  150 (179)
Q Consensus        83 ~l~~~~~~~l~~l~~L~~l~l~~n~l~~~--~~~~~--~~l~~L~~~~l~~~~~~--------~~~~~~~L~~L~l~~n~  150 (179)
                      .+.+..+..++.+++|++|++++|.+.+.  .+..+  ..+++|+.+.+.+....        .+..+++|++|++++|.
T Consensus       160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            88877778888888888999888886543  23333  66677776555543222        12345677777777777


Q ss_pred             cCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          151 LSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       151 ~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +.+.++...+..+++|++|++++|.++
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             CCcccchhhhhhcCCCCEEECCCCccC
Confidence            776443333344667777777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=1.4e-18  Score=126.54  Aligned_cols=156  Identities=13%  Similarity=0.177  Sum_probs=97.7

Q ss_pred             hhcccCceeeeccccc-CCCCCCcchhhhheecccchhccccceEEEeeC-ccccCCcccccccCCCCccEEEeccCCCC
Q 042092            8 CARNCAFMNRLLHYSC-LSNSFPSRKKLLIFALNESLFFILHSQNLNLCG-NDFNYSKISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      +...++|+.|++++|. ++...+           ..+..+++|++|++++ |.++ ...+..|.++++|++|++++|.++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~-----------~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L~l~~n~l~  118 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLES-----------HSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLK  118 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECT-----------TTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEEEEEEECCC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCH-----------hHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEEeCCCCCCc
Confidence            3445566666666664 543222           3566667777777776 6665 344455667777777777777766


Q ss_pred             CCCCccccCCCCcc---EEEcCCC-ccCCCCCCcCCCCcccc-cccccCC----ccccccCCCcccEEEcCCCc-cCCch
Q 042092           86 GSIPPSFCNLTQLM---HLDLSSN-ILSGHIPSSLSNLEQLR-EKKLTCS----ISSCIFELVNLTKVSLSSNN-LSSNV  155 (179)
Q Consensus        86 ~~~~~~l~~l~~L~---~l~l~~n-~l~~~~~~~~~~l~~L~-~~~l~~~----~~~~~~~~~~L~~L~l~~n~-~~~~~  155 (179)
                      + .|. +..+++|+   ++++++| .+....+..+..+++|+ .+.+.+.    ++......++|++|++++|. +++ +
T Consensus       119 ~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~-i  195 (239)
T 2xwt_C          119 M-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV-I  195 (239)
T ss_dssp             S-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCE-E
T ss_pred             c-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCccc-C
Confidence            4 444 66666666   7777777 66644455677777777 6555432    33333333678888888884 776 5


Q ss_pred             hhHhhcCC-CCCcEEEccCCcccc
Q 042092          156 ELYMFTKL-KSLEVLDLSYNKLSL  178 (179)
Q Consensus       156 ~~~~~~~l-~~L~~L~l~~n~l~~  178 (179)
                      +...+..+ ++|+.|++++|++++
T Consensus       196 ~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          196 DKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             CTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             CHHHhhccccCCcEEECCCCcccc
Confidence            44444557 888888888888764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=138.24  Aligned_cols=157  Identities=21%  Similarity=0.191  Sum_probs=118.9

Q ss_pred             hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092            6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus         6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      ..+...++|+.|++++|.+++..|           ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.+.
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEP-----------GAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             hHccCCCCCCEEECCCCccCEeCh-----------hhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccc
Confidence            345667899999999999987767           78899999999999999987 455566788999999999999998


Q ss_pred             CCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhh
Q 042092           86 GSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMF  160 (179)
Q Consensus        86 ~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  160 (179)
                      ...+..|..+++|++|++++|.+.+..+..+..+++|+.+.+.+     ..+..+..+++|+.|++++|.+.+..+ ..+
T Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~  196 (477)
T 2id5_A          118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-YSF  196 (477)
T ss_dssp             EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-TCS
T ss_pred             cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-hhc
Confidence            77788888899999999999998877777888888888755543     222345666777777777777766332 223


Q ss_pred             cCCCCCcEEEccCCc
Q 042092          161 TKLKSLEVLDLSYNK  175 (179)
Q Consensus       161 ~~l~~L~~L~l~~n~  175 (179)
                      ..+++|+.|++++|.
T Consensus       197 ~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          197 KRLYRLKVLEISHWP  211 (477)
T ss_dssp             CSCTTCCEEEEECCT
T ss_pred             ccCcccceeeCCCCc
Confidence            335666666655543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=1.5e-18  Score=141.52  Aligned_cols=153  Identities=21%  Similarity=0.172  Sum_probs=112.6

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.++...|..
T Consensus        32 ~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS-----------YSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             TTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred             CCcCEEECCCCCcCEeCh-----------hhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhh
Confidence            567888888888876555           67888888888888888887 455677888888888888888888777888


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      |+.+++|++|++++|.+.+..+..++.+++|+.+.+.+      .+|..++.+++|++|++++|.+.+..+..+.. +++
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~  178 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRE  178 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHH
T ss_pred             cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhc
Confidence            88888888888888888756557788888888755543      35677788888888888888887744433222 332


Q ss_pred             ----CcEEEccCCccc
Q 042092          166 ----LEVLDLSYNKLS  177 (179)
Q Consensus       166 ----L~~L~l~~n~l~  177 (179)
                          +..+++++|.++
T Consensus       179 L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          179 NPQVNLSLDMSLNPID  194 (606)
T ss_dssp             CTTCCCEEECTTCCCC
T ss_pred             cccccceeeccCCCcc
Confidence                235666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=2.4e-18  Score=136.11  Aligned_cols=156  Identities=25%  Similarity=0.277  Sum_probs=96.3

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccccc-------------------
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYG-------------------   67 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-------------------   67 (179)
                      .+..+++|+.|++++|.++...+           ..+..+++|++|++++|.++ ...+..                   
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~  185 (452)
T 3zyi_A          118 AFNGLASLNTLELFDNWLTVIPS-----------GAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE  185 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCCT-----------TTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCC
T ss_pred             hccCcccCCEEECCCCcCCccCh-----------hhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCcc
Confidence            44567788888888888875444           44666667777777777664 233333                   


Q ss_pred             ------ccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCcccccc
Q 042092           68 ------FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIF  136 (179)
Q Consensus        68 ------~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~  136 (179)
                            +.++++|++|++++|.+++. | .+..+++|++|++++|.+.+..|..+..+++|+.+.+.     +..+..+.
T Consensus       186 ~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  263 (452)
T 3zyi_A          186 YISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD  263 (452)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             ccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence                  44555555555555555532 2 34555666666666666665556666666666664443     23345566


Q ss_pred             CCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          137 ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       137 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      .+++|++|++++|.+++ ++...+..+++|+.|++++|++.
T Consensus       264 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          264 GLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCcCCc-cChHHhccccCCCEEEccCCCcC
Confidence            67777777777777776 44444445777777777777653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=1.6e-18  Score=141.24  Aligned_cols=134  Identities=21%  Similarity=0.202  Sum_probs=60.9

Q ss_pred             cchhccccceEEEeeCccccCCccc-ccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCC-CCCCcCCC
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKIS-YGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSG-HIPSSLSN  118 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~-~~~~~~~~  118 (179)
                      ..+..+++|++|++++|.+.+ ..+ ..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+ ..|..+..
T Consensus       393 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  471 (606)
T 3vq2_A          393 ANFMGLEELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN  471 (606)
T ss_dssp             CCCTTCTTCCEEECTTSEEES-TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             hhccCCCCCCeeECCCCccCC-ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence            344455555555555555542 222 344455555555555555544444444455555555555555443 23444444


Q ss_pred             Cccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092          119 LEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL  176 (179)
Q Consensus       119 l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  176 (179)
                      +++|+.+.+.     +..+..+..+++|++|++++|.+.+..|..+.. +++|+.|++++|++
T Consensus       472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRI  533 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT-CTTCCEEECTTSCC
T ss_pred             CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC-CCcCCEEECCCCcC
Confidence            4444443322     222333444444444444444444433332222 44444444444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=1.4e-18  Score=141.61  Aligned_cols=154  Identities=21%  Similarity=0.195  Sum_probs=117.3

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ..+++|||++|.+++..+           ..|..+++|++|++++|.++ ...+.+|.++++|++|++++|+++...+..
T Consensus        52 ~~~~~LdLs~N~i~~l~~-----------~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGS-----------YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             TTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             cCCCEEEeeCCCCCCCCH-----------HHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            367899999999986555           67888999999999999987 456777889999999999999988666667


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhc--CC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFT--KL  163 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~l  163 (179)
                      |..+++|++|++++|.+.+..+..++.+++|+.+.+.+      ..|..++.++.|++|++++|.+.+..+..+..  .+
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence            88899999999999999866566788888888866654      24566777888999999999888754443321  12


Q ss_pred             C-CCcEEEccCCccc
Q 042092          164 K-SLEVLDLSYNKLS  177 (179)
Q Consensus       164 ~-~L~~L~l~~n~l~  177 (179)
                      + ....++++.|.++
T Consensus       200 ~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          200 PLLNLSLDLSLNPMN  214 (635)
T ss_dssp             TTCCCEEECTTCCCC
T ss_pred             hhhhhhhhcccCccc
Confidence            2 2335677776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.77  E-value=6.8e-18  Score=139.32  Aligned_cols=155  Identities=19%  Similarity=0.130  Sum_probs=123.7

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..+.++++|++|++++|.++...+..
T Consensus        25 ~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~   92 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA-----------ANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKT   92 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG-----------GGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcEEECCCCCCCCcCH-----------HHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhh
Confidence            578899999999886555           67888999999999999987 466777888999999999999988665557


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhh-cCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMF-TKLKS  165 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~  165 (179)
                      |+.+++|+++++++|.+.+..+..+..+++|+++++.     +..+..+..+++|++|++++|.+.+..+..+. ..+++
T Consensus        93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            8889999999999999886666788888888886554     34556677888999999999998885554432 23678


Q ss_pred             CcEEEccCCcccc
Q 042092          166 LEVLDLSYNKLSL  178 (179)
Q Consensus       166 L~~L~l~~n~l~~  178 (179)
                      |+.|++++|.+++
T Consensus       173 L~~L~L~~n~l~~  185 (680)
T 1ziw_A          173 LKKLELSSNQIKE  185 (680)
T ss_dssp             ESEEECTTCCCCC
T ss_pred             ccEEECCCCcccc
Confidence            9999999988764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=9.7e-19  Score=134.13  Aligned_cols=152  Identities=19%  Similarity=0.143  Sum_probs=126.7

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ++++.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..+.++++|++|++++|.++...+..
T Consensus        52 ~~L~~L~l~~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  119 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISN-----------SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSW  119 (353)
T ss_dssp             TTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred             ccCcEEECCCCcCcccCH-----------HHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence            478999999999985444           57899999999999999997 456777999999999999999999655555


Q ss_pred             ccCCCCccEEEcCCCccCCCCCC--cCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPS--SLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL  163 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l  163 (179)
                      +..+++|+++++++|.+. .+|.  .+..+++|+.+.+.+      ..+..+..+++|++|++++|.+.+..+..+.. +
T Consensus       120 ~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l  197 (353)
T 2z80_A          120 FKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-I  197 (353)
T ss_dssp             HTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-C
T ss_pred             hCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-c
Confidence            889999999999999998 4454  788899998866554      23556788999999999999999855665554 9


Q ss_pred             CCCcEEEccCCccc
Q 042092          164 KSLEVLDLSYNKLS  177 (179)
Q Consensus       164 ~~L~~L~l~~n~l~  177 (179)
                      ++|++|++++|.++
T Consensus       198 ~~L~~L~l~~n~l~  211 (353)
T 2z80_A          198 QNVSHLILHMKQHI  211 (353)
T ss_dssp             SEEEEEEEECSCST
T ss_pred             ccCCeecCCCCccc
Confidence            99999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.76  E-value=5.5e-18  Score=138.12  Aligned_cols=135  Identities=26%  Similarity=0.258  Sum_probs=61.3

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCC---CCCcCC
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH---IPSSLS  117 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~---~~~~~~  117 (179)
                      ..+..+++|++|++++|.+++...+..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+.   .+..+.
T Consensus       394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  473 (606)
T 3t6q_A          394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ  473 (606)
T ss_dssp             TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred             HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence            34444555555555555544211222344555555555555555444444445555555555555554321   112344


Q ss_pred             CCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          118 NLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       118 ~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      .+++|+.+.+.     +..|..+..+++|++|++++|.+.+..+..+.. +++| .|++++|.++
T Consensus       474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGI-YLNLASNHIS  536 (606)
T ss_dssp             GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT-CCSC-EEECCSSCCC
T ss_pred             cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc-cccc-EEECcCCccc
Confidence            44444443222     223344444555555555555555433333222 4555 5555555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.76  E-value=3.9e-18  Score=138.99  Aligned_cols=154  Identities=15%  Similarity=0.043  Sum_probs=130.4

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ..++.|++++|.+++..|           ..+..+++|++|++++|.+. ...+..|.++++|++|++++|.+.+..|..
T Consensus        33 ~~l~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  100 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQN-----------TTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETA  100 (606)
T ss_dssp             TTCCEEECTTCCCSEECT-----------TTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred             CcCcEEEccCCccCcCCh-----------hHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhh
Confidence            468999999999997667           78999999999999999997 567888999999999999999999888889


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC-----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS-----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL  166 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L  166 (179)
                      ++.+++|++|++++|.+.+..+..+..+++|+.+.+.+.     ....+..+++|++|++++|.+.+..+..+.. +++|
T Consensus       101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L  179 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQA  179 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT-TTTC
T ss_pred             hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh-hccc
Confidence            999999999999999998666788899999998776653     2233444889999999999999855555544 9999


Q ss_pred             c--EEEccCCcccc
Q 042092          167 E--VLDLSYNKLSL  178 (179)
Q Consensus       167 ~--~L~l~~n~l~~  178 (179)
                      +  .|++++|.+++
T Consensus       180 ~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          180 TNLSLNLNGNDIAG  193 (606)
T ss_dssp             CSEEEECTTCCCCE
T ss_pred             ceeEEecCCCccCc
Confidence            8  89999998865

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=2.6e-18  Score=138.49  Aligned_cols=155  Identities=20%  Similarity=0.172  Sum_probs=96.8

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.+++|++++|.+++..|           ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.+++..+..
T Consensus        26 ~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   93 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGH-----------GDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW   93 (549)
T ss_dssp             TTCCEEECCSSCCCEECS-----------STTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred             CCccEEECcCCccCccCh-----------hhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHH
Confidence            467777787777775555           56677777777777777776 344556677777777777777776555555


Q ss_pred             ccCCCCccEEEcCCCccCC-CCCCcCCCCcccccccccC-----Ccc-ccccCCCcccEEEcCCCccCCc----------
Q 042092           92 FCNLTQLMHLDLSSNILSG-HIPSSLSNLEQLREKKLTC-----SIS-SCIFELVNLTKVSLSSNNLSSN----------  154 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~~~l~~-----~~~-~~~~~~~~L~~L~l~~n~~~~~----------  154 (179)
                      ++.+++|++|++++|.+.+ ..|..+..+++|+.+.+.+     .++ ..+..+++|++|++++|.+.+.          
T Consensus        94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  173 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD  173 (549)
T ss_dssp             HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred             hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence            6677777777777777654 2345566666666544332     122 3445555555555555555443          


Q ss_pred             -------------hhhHhhcCCCCCcEEEccCCcccc
Q 042092          155 -------------VELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       155 -------------~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                                   ++..+...+++|+.|++++|.+++
T Consensus       174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             CceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence                         333333447788888888887765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.76  E-value=2.2e-18  Score=139.28  Aligned_cols=155  Identities=19%  Similarity=0.247  Sum_probs=117.0

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      .++|+.|++++|.+.+ ++           ..+..+++|++|++++|.+.+......+..+++|++|++++|.+.+..|.
T Consensus       372 ~~~L~~L~l~~n~l~~-~~-----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  439 (570)
T 2z63_A          372 TTSLKYLDLSFNGVIT-MS-----------SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG  439 (570)
T ss_dssp             CSCCCEEECCSCSEEE-EE-----------EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             cCccCEEECCCCcccc-cc-----------ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence            4455555555555542 22           34777888888888888886322235677888999999999988877788


Q ss_pred             cccCCCCccEEEcCCCccC-CCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092           91 SFCNLTQLMHLDLSSNILS-GHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK  164 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~-~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  164 (179)
                      .+..+++|+++++++|.+. +.+|..+..+++|+.+.+.     +..|..+..+++|++|++++|.+++..+. .+..++
T Consensus       440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~  518 (570)
T 2z63_A          440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG-IFDRLT  518 (570)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCT
T ss_pred             hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH-Hhhccc
Confidence            8888899999999999886 4678888888888875554     34567788889999999999999884443 444589


Q ss_pred             CCcEEEccCCcccc
Q 042092          165 SLEVLDLSYNKLSL  178 (179)
Q Consensus       165 ~L~~L~l~~n~l~~  178 (179)
                      +|+.|++++|++++
T Consensus       519 ~L~~L~l~~N~~~~  532 (570)
T 2z63_A          519 SLQKIWLHTNPWDC  532 (570)
T ss_dssp             TCCEEECCSSCBCC
T ss_pred             CCcEEEecCCcccC
Confidence            99999999999876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2.4e-18  Score=132.48  Aligned_cols=82  Identities=22%  Similarity=0.173  Sum_probs=39.1

Q ss_pred             ccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092           45 FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE  124 (179)
Q Consensus        45 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  124 (179)
                      .+++|+.|++++|.++ ...+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+..+++|+.
T Consensus        62 ~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             CCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence            4455555555555554 233334445555555555555554333334444555555555555554444444444444444


Q ss_pred             ccc
Q 042092          125 KKL  127 (179)
Q Consensus       125 ~~l  127 (179)
                      +.+
T Consensus       141 L~L  143 (361)
T 2xot_A          141 LYL  143 (361)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=7.3e-18  Score=116.34  Aligned_cols=136  Identities=18%  Similarity=0.113  Sum_probs=111.0

Q ss_pred             ccCceeeecccccCC-CCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092           11 NCAFMNRLLHYSCLS-NSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP   89 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   89 (179)
                      .+.++.|++++|.++ +.+|           ..+..+++|+.|++++|.+++ .  ..+..+++|++|++++|.+.+..|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~-----------~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIE-----------GLTAEFVNLEFLSLINVGLIS-V--SNLPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCS-----------SCCGGGGGCCEEEEESSCCCC-C--SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred             cccCCEEECCCCCCChhhHH-----------HHHHhCCCCCEEeCcCCCCCC-h--hhhccCCCCCEEECcCCcCchHHH
Confidence            378999999999998 6778           678899999999999999973 3  668899999999999999997677


Q ss_pred             ccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchh--hHhhcCCCCCc
Q 042092           90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVE--LYMFTKLKSLE  167 (179)
Q Consensus        90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~  167 (179)
                      ..+..+++|++|++++|.+.+. +.                 +..+..+++|++|++++|.+.+..+  ...+..+++|+
T Consensus        89 ~~~~~l~~L~~L~Ls~N~l~~~-~~-----------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGNKLKDI-ST-----------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             HHHHHCTTCCEEECBSSSCCSS-GG-----------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             HHHhhCCCCCEEeccCCccCcc-hh-----------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            7777799999999999998732 21                 1334556789999999999998433  13455699999


Q ss_pred             EEEccCCcccc
Q 042092          168 VLDLSYNKLSL  178 (179)
Q Consensus       168 ~L~l~~n~l~~  178 (179)
                      .|+++.|.++.
T Consensus       151 ~L~l~~n~~~~  161 (168)
T 2ell_A          151 YLDGYDREDQE  161 (168)
T ss_dssp             EETTEETTSCB
T ss_pred             EecCCCCChhh
Confidence            99999998753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.76  E-value=9.5e-18  Score=130.16  Aligned_cols=92  Identities=23%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      .+...++|+.|++++|.+++..|           ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+..
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPP-----------HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             hccCCCCcCEEECCCCCCCcCCH-----------HHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc
Confidence            44567888999999998886666           66778888888888888886 3444556778888888888888876


Q ss_pred             CCCccccCCCCccEEEcCCCccCC
Q 042092           87 SIPPSFCNLTQLMHLDLSSNILSG  110 (179)
Q Consensus        87 ~~~~~l~~l~~L~~l~l~~n~l~~  110 (179)
                      ..+..+..+++|++|++++|.+.+
T Consensus       156 ~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          156 IEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             cChhhccCCCCCCEEECCCCcCCc
Confidence            666677778888888888887764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.76  E-value=4.5e-18  Score=136.42  Aligned_cols=156  Identities=24%  Similarity=0.258  Sum_probs=126.1

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCC-cccccccCCCCccEEEeccCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYS-KISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ...+.|+.|++++|.+++.+|           ..+..+++|++|++++|.+++. ..+..+..+++|++|++++|.+.+.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  389 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVF-----------ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD  389 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTT-----------TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred             hhCCcccEEEeECCccChhhh-----------hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence            456788999999999988777           7888999999999999999720 2345688999999999999999874


Q ss_pred             CCc-cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092           88 IPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTK  162 (179)
Q Consensus        88 ~~~-~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  162 (179)
                      .|. .+..+++|+++++++|.+.+..|..+.  ++|+.+.+.+    .+|..+..+++|++|++++|.++. +|...+..
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~  466 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDR  466 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred             cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhcc
Confidence            555 477889999999999999877776653  4555544443    567777789999999999999997 66654555


Q ss_pred             CCCCcEEEccCCcccc
Q 042092          163 LKSLEVLDLSYNKLSL  178 (179)
Q Consensus       163 l~~L~~L~l~~n~l~~  178 (179)
                      +++|+.|++++|++++
T Consensus       467 l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          467 LTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CTTCCEEECCSSCBCC
T ss_pred             CCcccEEECcCCCCcc
Confidence            9999999999999976

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.76  E-value=4.4e-18  Score=137.56  Aligned_cols=154  Identities=21%  Similarity=0.219  Sum_probs=126.5

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.++...|..
T Consensus        28 ~~l~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGS-----------YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             SSCCEEECCSCCCCEECT-----------TTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccEEEccCCccCccCh-----------hHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence            468999999999986666           68899999999999999987 456677899999999999999998777788


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      |..+++|++|++++|.+....+..++.+++|+++.+.+      .+|..++.+++|++|++++|.+.+..+..+.. +++
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~  174 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ  174 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHT
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhc
Confidence            99999999999999999855455688888888866654      35778888999999999999998855544443 666


Q ss_pred             C----cEEEccCCcccc
Q 042092          166 L----EVLDLSYNKLSL  178 (179)
Q Consensus       166 L----~~L~l~~n~l~~  178 (179)
                      |    ..+++++|.+++
T Consensus       175 L~~~~~~L~l~~n~l~~  191 (570)
T 2z63_A          175 MPLLNLSLDLSLNPMNF  191 (570)
T ss_dssp             CTTCCCEEECTTCCCCE
T ss_pred             cchhhhhcccCCCCcee
Confidence            6    788888887754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=2.3e-18  Score=125.31  Aligned_cols=151  Identities=19%  Similarity=0.171  Sum_probs=124.8

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCcc-ccCCcccccccCCCCccEEEecc-CCCCCCCC
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGND-FNYSKISYGFSQFRSLTILNLRH-YNFRGSIP   89 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~   89 (179)
                      ..++.|++++|.+++..+           ..+..+++|++|++++|. ++ ...+..|.++++|++|++++ |.++...+
T Consensus        31 ~~l~~L~l~~n~l~~i~~-----------~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPS-----------HAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             TTCCEEEEESCCCSEECT-----------TTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             CcccEEEEeCCcceEECH-----------HHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            378999999999986555           578899999999999997 76 45566789999999999999 99997777


Q ss_pred             ccccCCCCccEEEcCCCccCCCCCCcCCCCcccc---cccccC------CccccccCCCccc-EEEcCCCccCCchhhHh
Q 042092           90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR---EKKLTC------SISSCIFELVNLT-KVSLSSNNLSSNVELYM  159 (179)
Q Consensus        90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~---~~~l~~------~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~  159 (179)
                      ..|..+++|+++++++|.+.+ +|. +..+++|+   .+.+.+      ..+..+..+++|+ +|++++|.+.. +|...
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~  175 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYA  175 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhh
Confidence            789999999999999999984 666 77777777   654443      3345578889999 99999999996 77666


Q ss_pred             hcCCCCCcEEEccCCc-ccc
Q 042092          160 FTKLKSLEVLDLSYNK-LSL  178 (179)
Q Consensus       160 ~~~l~~L~~L~l~~n~-l~~  178 (179)
                      +. .++|+.|++++|+ +++
T Consensus       176 ~~-~~~L~~L~L~~n~~l~~  194 (239)
T 2xwt_C          176 FN-GTKLDAVYLNKNKYLTV  194 (239)
T ss_dssp             TT-TCEEEEEECTTCTTCCE
T ss_pred             cC-CCCCCEEEcCCCCCccc
Confidence            66 4899999999995 753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=7.1e-18  Score=129.89  Aligned_cols=157  Identities=28%  Similarity=0.271  Sum_probs=127.0

Q ss_pred             hhhhcc--cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccccccc-CCCCccEEEeccC
Q 042092            6 SECARN--CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFS-QFRSLTILNLRHY   82 (179)
Q Consensus         6 ~~~~~~--~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~l~~~   82 (179)
                      ..|+..  +.-+.++.+++.++ .+|           ..+  ...++.|++++|.++ ...+..+. .+++|+.|++++|
T Consensus        10 ~~Cp~~C~C~~~~l~c~~~~l~-~iP-----------~~~--~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N   74 (361)
T 2xot_A           10 VSCPANCLCASNILSCSKQQLP-NVP-----------QSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN   74 (361)
T ss_dssp             TTCCTTCEEETTEEECCSSCCS-SCC-----------SSC--CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSS
T ss_pred             CCCCCCCEECCCEEEeCCCCcC-ccC-----------ccC--CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCC
Confidence            446543  33468999999988 567           433  345899999999997 45566676 8999999999999


Q ss_pred             CCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCchhh
Q 042092           83 NFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVEL  157 (179)
Q Consensus        83 ~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~  157 (179)
                      .++...+..|..+++|++|++++|.+....+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+.+ +|.
T Consensus        75 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~  153 (361)
T 2xot_A           75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPV  153 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCG
T ss_pred             cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCH
Confidence            99977778899999999999999999866677889999998866654     346678889999999999999998 655


Q ss_pred             Hhh---cCCCCCcEEEccCCcccc
Q 042092          158 YMF---TKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       158 ~~~---~~l~~L~~L~l~~n~l~~  178 (179)
                      ..+   ..+++|+.|++++|+|++
T Consensus       154 ~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          154 ELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             GGTC----CTTCCEEECCSSCCCC
T ss_pred             HHhcCcccCCcCCEEECCCCCCCc
Confidence            554   458999999999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=8.4e-18  Score=118.70  Aligned_cols=130  Identities=22%  Similarity=0.258  Sum_probs=94.5

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccc-cccCCCCccEEEeccCCCCCCCCcc
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISY-GFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      .-+.++++++.++ .+|           ..+.  ..+++|++++|.++ ...+. .+..+++|++|++++|.+++..|..
T Consensus         9 ~~~~l~~s~~~l~-~ip-----------~~~~--~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~   73 (192)
T 1w8a_A            9 EGTTVDCTGRGLK-EIP-----------RDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNA   73 (192)
T ss_dssp             ETTEEECTTSCCS-SCC-----------SCCC--TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred             CCCEEEcCCCCcC-cCc-----------cCCC--CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhH
Confidence            3478999999997 677           4443  38999999999997 34433 4889999999999999999888899


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEc
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDL  171 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  171 (179)
                      |..+++|++|++++|.+.+..+..+..++                   +|++|++++|.+++..|..+. .+++|++|++
T Consensus        74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------------------~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L  133 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIKEISNKMFLGLH-------------------QLKTLNLYDNQISCVMPGSFE-HLNSLTSLNL  133 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCT-------------------TCCEEECCSSCCCEECTTSST-TCTTCCEEEC
T ss_pred             cCCcccCCEEECCCCcCCccCHHHhcCCC-------------------CCCEEECCCCcCCeeCHHHhh-cCCCCCEEEe
Confidence            99999999999999999866565555554                   455555555555553333322 2555555555


Q ss_pred             cCCccc
Q 042092          172 SYNKLS  177 (179)
Q Consensus       172 ~~n~l~  177 (179)
                      ++|+++
T Consensus       134 ~~N~l~  139 (192)
T 1w8a_A          134 ASNPFN  139 (192)
T ss_dssp             TTCCBC
T ss_pred             CCCCcc
Confidence            555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.2e-17  Score=136.39  Aligned_cols=93  Identities=23%  Similarity=0.166  Sum_probs=73.7

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      .+..+++|+.|++++|.+++..|           ..+..+++|++|++++|.++ ...+..|..+++|++|++++|.+++
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~  161 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPP-----------HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER  161 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             HhcCCCCCCEEECCCCcCCCCCH-----------HHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence            44567889999999999887666           66788888888888888887 4555556788888888888888887


Q ss_pred             CCCccccCCCCccEEEcCCCccCCC
Q 042092           87 SIPPSFCNLTQLMHLDLSSNILSGH  111 (179)
Q Consensus        87 ~~~~~l~~l~~L~~l~l~~n~l~~~  111 (179)
                      ..|..+..+++|++|++++|.+.+.
T Consensus       162 ~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          162 IEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CChhhhhcCCcCcEEECcCCCCCCc
Confidence            7777788888888888888877643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.75  E-value=5.1e-19  Score=145.43  Aligned_cols=157  Identities=15%  Similarity=0.220  Sum_probs=84.4

Q ss_pred             hhcccCceeeecccccCCCC-----------------CCcchhhhheecccchh--ccccceEEEeeCccccCCcccccc
Q 042092            8 CARNCAFMNRLLHYSCLSNS-----------------FPSRKKLLIFALNESLF--FILHSQNLNLCGNDFNYSKISYGF   68 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~-----------------~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~   68 (179)
                      ...+++|+.|++++|.+++.                 +|           ..+.  .+++|++|++++|.+. ...|..+
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-----------~~l~~~~l~~L~~L~L~~n~l~-~~~p~~l  269 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----------EDLKWDNLKDLTDVEVYNCPNL-TKLPTFL  269 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-----------SCCCGGGCTTCCEEEEECCTTC-SSCCTTT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCc-----------hhhhhcccCCCCEEEecCCcCC-ccChHHH
Confidence            34566777777777777753                 55           5555  6666666666666665 3455556


Q ss_pred             cCCCCccEEEeccCC-CCC-CCCccccCC------CCccEEEcCCCccCCCCCC--cCCCCccccc--------------
Q 042092           69 SQFRSLTILNLRHYN-FRG-SIPPSFCNL------TQLMHLDLSSNILSGHIPS--SLSNLEQLRE--------------  124 (179)
Q Consensus        69 ~~l~~L~~L~l~~~~-l~~-~~~~~l~~l------~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~--------------  124 (179)
                      .++++|++|++++|. +++ ..|..++.+      ++|+++++++|.+. .+|.  .+..+++|+.              
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~  348 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPA  348 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCC
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhh
Confidence            666666666666665 554 344444433      45555555555554 4444  4444444444              


Q ss_pred             ---------ccccC----CccccccCCCc-ccEEEcCCCccCCchhhHhhc-CCCCCcEEEccCCcccc
Q 042092          125 ---------KKLTC----SISSCIFELVN-LTKVSLSSNNLSSNVELYMFT-KLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       125 ---------~~l~~----~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~  178 (179)
                               +.+.+    .+|..+..+++ |++|++++|.+.. +|..+.. .+++|+.|++++|.++|
T Consensus       349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCC
Confidence                     33322    23444455555 6666666665553 4433221 12256666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=2.3e-18  Score=138.81  Aligned_cols=147  Identities=24%  Similarity=0.224  Sum_probs=122.6

Q ss_pred             eecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCC
Q 042092           17 RLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLT   96 (179)
Q Consensus        17 l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~   96 (179)
                      .|.+++.++ .+|           ..+  .+.+++|++++|.++ ...+..+.++++|++|++++|.+++..|..|..++
T Consensus        10 c~~~~~~l~-~ip-----------~~~--~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   74 (549)
T 2z81_A           10 CDGRSRSFT-SIP-----------SGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG   74 (549)
T ss_dssp             EECTTSCCS-SCC-----------SCC--CTTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             EECCCCccc-ccc-----------ccC--CCCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccc
Confidence            577888887 677           444  378999999999997 46677899999999999999999988888899999


Q ss_pred             CccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEE
Q 042092           97 QLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLD  170 (179)
Q Consensus        97 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  170 (179)
                      +|++|++++|.+.+..+..++.+++|+++++.+      ..+..++.+++|++|++++|.+.+.++...+..+++|++|+
T Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  154 (549)
T 2z81_A           75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE  154 (549)
T ss_dssp             TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence            999999999999977667799999999876654      24567888999999999999955546644455599999999


Q ss_pred             ccCCcccc
Q 042092          171 LSYNKLSL  178 (179)
Q Consensus       171 l~~n~l~~  178 (179)
                      +++|.+++
T Consensus       155 L~~n~l~~  162 (549)
T 2z81_A          155 IKALSLRN  162 (549)
T ss_dssp             EEETTCCE
T ss_pred             ccCCcccc
Confidence            99998875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=2e-18  Score=130.47  Aligned_cols=132  Identities=20%  Similarity=0.160  Sum_probs=111.2

Q ss_pred             ccccceEEEeeCccccCCcccccc--cCCCCccEEEeccCCCCCCCCccccCC-----CCccEEEcCCCccCCCCCCcCC
Q 042092           45 FILHSQNLNLCGNDFNYSKISYGF--SQFRSLTILNLRHYNFRGSIPPSFCNL-----TQLMHLDLSSNILSGHIPSSLS  117 (179)
Q Consensus        45 ~l~~L~~L~l~~n~i~~~~~~~~~--~~l~~L~~L~l~~~~l~~~~~~~l~~l-----~~L~~l~l~~n~l~~~~~~~~~  117 (179)
                      .+++|++|++++|.++ ...+..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+.
T Consensus        93 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             CcCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence            6899999999999998 3555554  8899999999999999966 7777776     8999999999999977778999


Q ss_pred             CCcccccccccCCc-------cccc--cCCCcccEEEcCCCccCC--chhhHhhcCCCCCcEEEccCCcccc
Q 042092          118 NLEQLREKKLTCSI-------SSCI--FELVNLTKVSLSSNNLSS--NVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       118 ~l~~L~~~~l~~~~-------~~~~--~~~~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      .+++|+.+.++++.       +..+  ..+++|++|++++|.+.+  .++..++..+++|+.|++++|.+++
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            99999998877643       3333  788999999999999985  2344555668999999999999986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=2.9e-17  Score=124.89  Aligned_cols=154  Identities=19%  Similarity=0.167  Sum_probs=84.6

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      +...++|+.|++++|.+++..|           ..+..+++|++|++++|.++ . .+..+.  ++|++|++++|.++..
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~-l~~~~~--~~L~~L~l~~n~i~~~  138 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHE-----------KAFSPLRKLQKLYISKNHLV-E-IPPNLP--SSLVELRIHDNRIRKV  138 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECG-----------GGSTTCTTCCEEECCSSCCC-S-CCSSCC--TTCCEEECCSSCCCCC
T ss_pred             hhCCCCCcEEECCCCccCccCH-----------hHhhCcCCCCEEECCCCcCC-c-cCcccc--ccCCEEECCCCccCcc
Confidence            4556677777777777765555           55666666666666666654 1 222111  4444444444444433


Q ss_pred             CCccccCCCCccEEEcCCCc----------------------------------------------cCCCCCCcCCCCcc
Q 042092           88 IPPSFCNLTQLMHLDLSSNI----------------------------------------------LSGHIPSSLSNLEQ  121 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~----------------------------------------------l~~~~~~~~~~l~~  121 (179)
                      .+..+..+++|+++++++|.                                              +.+..+..+..+++
T Consensus       139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~  218 (332)
T 2ft3_A          139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK  218 (332)
T ss_dssp             CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred             CHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCC
Confidence            33334444444444444443                                              33333344445555


Q ss_pred             cccccccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          122 LREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       122 L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      |+.+.+.+     ..+..+..+++|++|++++|.+.. +|..+.. +++|+.|++++|++++
T Consensus       219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~-l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPD-LKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTTGGG-CTTCCEEECCSSCCCB
T ss_pred             CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChhhhc-CccCCEEECCCCCCCc
Confidence            55443332     233355666777777777777775 5555444 7777777777777754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=1.7e-17  Score=126.06  Aligned_cols=165  Identities=18%  Similarity=0.185  Sum_probs=92.5

Q ss_pred             hhcccCceeeecccccCCCCCCcchh-----------hhheecccchhccccceEEEeeCccccC-CcccccccCCCCcc
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKK-----------LLIFALNESLFFILHSQNLNLCGNDFNY-SKISYGFSQFRSLT   75 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~-----------~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~   75 (179)
                      +..+++|+.|++++|.++ .+|....           ++....+..+..+++|++|++++|.+.. ...+..+..+++|+
T Consensus        96 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A           96 FAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             TTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            445567777777777766 3331100           0000111335556666777777666631 12344556666666


Q ss_pred             EEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCc
Q 042092           76 ILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNN  150 (179)
Q Consensus        76 ~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~  150 (179)
                      +|++++|.++ ..|..+.  ++|+++++++|.+.+..+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.
T Consensus       175 ~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          175 YIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             EEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             EEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence            6666666665 3333332  5666666666666655556666666666644443     223345566667777777776


Q ss_pred             cCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          151 LSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       151 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +.. +|..+.. +++|++|++++|++++
T Consensus       252 l~~-lp~~l~~-l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          252 LVK-VPGGLAD-HKYIQVVYLHNNNISA  277 (330)
T ss_dssp             CSS-CCTTTTT-CSSCCEEECCSSCCCC
T ss_pred             Ccc-CChhhcc-CCCcCEEECCCCcCCc
Confidence            664 5544433 6667777777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.74  E-value=5.6e-18  Score=143.18  Aligned_cols=156  Identities=23%  Similarity=0.202  Sum_probs=122.3

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      .++++.||+++|.+++..+           ..+..+++|++|++++|.......+..|.++++|++|++++|.+....|.
T Consensus        23 p~~l~~LdLs~N~i~~i~~-----------~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTA-----------SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CTTCCEEEEESCCCCEECS-----------SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCcCEEECCCCcCCccCh-----------hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            4678999999999987777           78899999999999999665344477889999999999999999988888


Q ss_pred             cccCCCCccEEEcCCCccCCCCCCc--CCCCcccccccccC-----Cc-cccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIPSS--LSNLEQLREKKLTC-----SI-SSCIFELVNLTKVSLSSNNLSSNVELYMFTK  162 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~~~--~~~l~~L~~~~l~~-----~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  162 (179)
                      .|..+++|++|++++|.+.+..|..  +..+++|+.+++++     .. +..++.+++|++|++++|.+.+..+..+.. 
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-  170 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-  170 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-
Confidence            9999999999999999998766654  88888888866553     22 346788899999999999988755554432 


Q ss_pred             C--CCCcEEEccCCcccc
Q 042092          163 L--KSLEVLDLSYNKLSL  178 (179)
Q Consensus       163 l--~~L~~L~l~~n~l~~  178 (179)
                      +  ++|+.|+++.|.+++
T Consensus       171 l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             HHHCSSCCCEECCSBSCC
T ss_pred             ccCCccceEECCCCcccc
Confidence            3  555555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.74  E-value=1.5e-17  Score=134.77  Aligned_cols=156  Identities=22%  Similarity=0.230  Sum_probs=125.8

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCC-cccccccCCCCccEEEeccCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYS-KISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ...++|+.|++++|.+++.+|           ..+..+++|++|++++|.+++. ..+..+..+++|+.|++++|.+++.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~  418 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVF-----------QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH  418 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTT-----------TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred             cCCCCceEEECCCCccccchh-----------hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence            456789999999999998777           7889999999999999999721 1245678999999999999999874


Q ss_pred             CCc-cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092           88 IPP-SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTK  162 (179)
Q Consensus        88 ~~~-~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  162 (179)
                      .|. .+..+++|+++++++|.+.+..|..+.  ++|+.+.+.+    .+|..+..+++|++|++++|.+++ +|...+..
T Consensus       419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~  495 (562)
T 3a79_B          419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDR  495 (562)
T ss_dssp             CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTT
T ss_pred             cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhc
Confidence            554 578889999999999999877666553  4565544443    566667788999999999999997 66654555


Q ss_pred             CCCCcEEEccCCcccc
Q 042092          163 LKSLEVLDLSYNKLSL  178 (179)
Q Consensus       163 l~~L~~L~l~~n~l~~  178 (179)
                      +++|+.|++++|++++
T Consensus       496 l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          496 LTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CTTCCCEECCSCCBCC
T ss_pred             CCCCCEEEecCCCcCC
Confidence            9999999999999876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=2.7e-17  Score=124.96  Aligned_cols=44  Identities=32%  Similarity=0.293  Sum_probs=23.8

Q ss_pred             ccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          133 SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       133 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      ..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|.++
T Consensus       210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          210 ASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV  253 (330)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCS
T ss_pred             HHhcCCCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCCcCc
Confidence            34455556666666666665533323322 666666666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=6.5e-17  Score=122.01  Aligned_cols=146  Identities=20%  Similarity=0.266  Sum_probs=65.6

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      ..+++|+.|++++|.+. .++           . +..+++|++|++++|.+++  .+ .+..+++|+.|++++|.+++. 
T Consensus        60 ~~l~~L~~L~L~~n~i~-~~~-----------~-~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~-  122 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQIT-DLA-----------P-LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDV-  122 (308)
T ss_dssp             GGCTTCCEEECCSSCCC-CCG-----------G-GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCC-
T ss_pred             hccCCCCEEEccCCcCC-CCh-----------h-HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCc-
Confidence            34455566666666555 233           2 4555555555555555541  22 344555555555555555432 


Q ss_pred             CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccc---cccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISS---CIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      + .+..+++|++|++++|.+.+. +. +..+++|+.+.+.+....   .+..+++|++|++++|.+.+ ++.  +..+++
T Consensus       123 ~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~  196 (308)
T 1h6u_A          123 T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISP--LASLPN  196 (308)
T ss_dssp             G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GGGCTT
T ss_pred             h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc-Chh--hcCCCC
Confidence            2 244555555555555555422 11 344444444333321100   13334444444444444444 211  122444


Q ss_pred             CcEEEccCCccc
Q 042092          166 LEVLDLSYNKLS  177 (179)
Q Consensus       166 L~~L~l~~n~l~  177 (179)
                      |++|++++|+++
T Consensus       197 L~~L~L~~N~l~  208 (308)
T 1h6u_A          197 LIEVHLKNNQIS  208 (308)
T ss_dssp             CCEEECTTSCCC
T ss_pred             CCEEEccCCccC
Confidence            444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.9e-17  Score=118.34  Aligned_cols=130  Identities=17%  Similarity=0.124  Sum_probs=113.0

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+++..+           ..+..+++|+.|++++|.++ ...+..|.++++|++|++++|.++...+..
T Consensus        32 ~~l~~L~l~~n~i~~i~~-----------~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~   99 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPP-----------GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSL   99 (220)
T ss_dssp             TTCCEEECCSSCCCEECT-----------TSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred             cCCCEEECCCCcCCCcCH-----------hHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence            478999999999996555           67889999999999999997 566888999999999999999999666666


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~  153 (179)
                      |..+++|++|++++|.+.+..+..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+..
T Consensus       100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            88999999999999999978888999999998865554     444567888999999999999976

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=3.3e-17  Score=135.24  Aligned_cols=142  Identities=24%  Similarity=0.201  Sum_probs=119.3

Q ss_pred             hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092            6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus         6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      ..+...++|+.|++++|.+++..|           ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.+.
T Consensus        43 ~~~~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~  110 (680)
T 1ziw_A           43 ANFTRYSQLTSLDVGFNTISKLEP-----------ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQ  110 (680)
T ss_dssp             GGGGGGTTCSEEECCSSCCCCCCT-----------THHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             HHHhCCCcCcEEECCCCccCccCH-----------HHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccC
Confidence            346677899999999999998778           78999999999999999997 455567999999999999999999


Q ss_pred             CCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC-----cccccc--CCCcccEEEcCCCccCCchhhH
Q 042092           86 GSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS-----ISSCIF--ELVNLTKVSLSSNNLSSNVELY  158 (179)
Q Consensus        86 ~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~-----~~~~~~--~~~~L~~L~l~~n~~~~~~~~~  158 (179)
                      +..|..|+.+++|++|++++|.+.+..+..+..+++|+.+.+.+.     .+..+.  .+++|++|++++|.+.+..+..
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  190 (680)
T 1ziw_A          111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC  190 (680)
T ss_dssp             CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred             ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence            777788999999999999999998788888999999998776653     233332  4578999999999998855544


Q ss_pred             h
Q 042092          159 M  159 (179)
Q Consensus       159 ~  159 (179)
                      +
T Consensus       191 ~  191 (680)
T 1ziw_A          191 F  191 (680)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=5e-17  Score=117.72  Aligned_cols=131  Identities=20%  Similarity=0.197  Sum_probs=113.6

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.|+.|++++|.+.+..+           ..+..+++|++|++++|.++ ...+..|..+++|+.|++++|.++...+..
T Consensus        40 ~~L~~L~Ls~n~i~~~~~-----------~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  107 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEP-----------GVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV  107 (229)
T ss_dssp             TTCSEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCEEEcCCCccCccCH-----------HHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhH
Confidence            679999999999997777           78899999999999999997 455677889999999999999999777777


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCccCCch
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNLSSNV  155 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~  155 (179)
                      |..+++|++|++++|.+. .+|..+..+++|+.+.+.+     ..+..+..+++|++|++++|.+....
T Consensus       108 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             hCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            889999999999999999 7888888899998866554     33456778899999999999998743

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=5.6e-17  Score=123.35  Aligned_cols=99  Identities=19%  Similarity=0.185  Sum_probs=82.8

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+.+..+           ..+..+++|++|++++|.++ ...+..+..+++|++|++++|.++ ..|..
T Consensus        54 ~~l~~L~l~~n~i~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~  120 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRK-----------DDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPN  120 (332)
T ss_dssp             TTCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCC-SCCSS
T ss_pred             CCCeEEECCCCcCCccCH-----------hHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCC-ccCcc
Confidence            579999999999986656           68999999999999999997 466788999999999999999998 55665


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccc
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK  125 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~  125 (179)
                      +.  ++|+++++++|.+....+..+..+++|+.+
T Consensus       121 ~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  152 (332)
T 2ft3_A          121 LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI  152 (332)
T ss_dssp             CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred             cc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence            54  799999999999985555556666666653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=6.3e-18  Score=135.01  Aligned_cols=148  Identities=17%  Similarity=0.082  Sum_probs=89.0

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      .++|+.|++++|.+++..|           ..+..+++|++|++++|.++ ...+  +..+++|++|++++|.+++..  
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~--   96 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISA-----------ADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELL--   96 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCG-----------GGGTTCTTCCEEECTTSCCE-EEEE--CTTCTTCCEEECCSSEEEEEE--
T ss_pred             CCCccEEEeeCCcCCCCCH-----------HHHhCCCCCCEEEeeCCCCC-CCcc--cccCCCCCEEEecCCcCCCCC--
Confidence            3489999999999997767           78889999999999999986 2333  788889999998888876332  


Q ss_pred             cccCCCCccEEEcCCCccCCCCCCcCCCCccc--ccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcE
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL--REKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEV  168 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L--~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  168 (179)
                         ..++|++|++++|.+.+..+..+..+..|  ..+.+++..+..++.+++|++|++++|.+.+..|..+...+++|+.
T Consensus        97 ---~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A           97 ---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             ---ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             ---CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence               12455555555555553333322222111  1122333334444445555555555555555444444323455555


Q ss_pred             EEccCCccc
Q 042092          169 LDLSYNKLS  177 (179)
Q Consensus       169 L~l~~n~l~  177 (179)
                      |++++|.++
T Consensus       174 L~Ls~N~l~  182 (487)
T 3oja_A          174 LNLQYNFIY  182 (487)
T ss_dssp             EECTTSCCC
T ss_pred             EecCCCccc
Confidence            555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=2.4e-18  Score=145.36  Aligned_cols=112  Identities=21%  Similarity=0.281  Sum_probs=64.4

Q ss_pred             ccccccCCCCccEEEeccCCCCC-----------------CCCcccc--CCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092           64 ISYGFSQFRSLTILNLRHYNFRG-----------------SIPPSFC--NLTQLMHLDLSSNILSGHIPSSLSNLEQLRE  124 (179)
Q Consensus        64 ~~~~~~~l~~L~~L~l~~~~l~~-----------------~~~~~l~--~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  124 (179)
                      +|..+.++++|+.|++++|.+++                 .+|+.++  .+++|++|++++|.+.+.+|..+..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            34445666666666666666664                 1556555  6666666666666666666666666666665


Q ss_pred             ccccC-------CccccccCC-------CcccEEEcCCCccCCchhh--HhhcCCCCCcEEEccCCccc
Q 042092          125 KKLTC-------SISSCIFEL-------VNLTKVSLSSNNLSSNVEL--YMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       125 ~~l~~-------~~~~~~~~~-------~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +.+.+       .+|..++.+       ++|++|++++|.+.. +|.  .+.. +++|+.|++++|.++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~-L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQK-MVKLGLLDCVHNKVR  586 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTT-CTTCCEEECTTSCCC
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhc-CCCCCEEECCCCCcc
Confidence            44332       233333333       266666666666663 544  3333 666666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=7.1e-17  Score=114.11  Aligned_cols=128  Identities=28%  Similarity=0.336  Sum_probs=99.0

Q ss_pred             ceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcccc
Q 042092           14 FMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC   93 (179)
Q Consensus        14 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~   93 (179)
                      -+.++++++.++ .+|           ..+  .+.+++|++++|.++  ..+..+..+++|+.|++++|.++...+..|.
T Consensus        12 ~~~l~~~~~~l~-~ip-----------~~~--~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~   75 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLP-----------KGI--PRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFS   75 (193)
T ss_dssp             TTEEECTTSCCS-SCC-----------SCC--CTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCEEEcCCCCCC-cCC-----------CCC--CCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHcc
Confidence            367899999988 667           443  368999999999996  4567899999999999999999988788899


Q ss_pred             CCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccC
Q 042092           94 NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSY  173 (179)
Q Consensus        94 ~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  173 (179)
                      .+++|++|++++|.+.+..+..+..                   +++|++|++++|.+.. ++...+..+++|+.|++++
T Consensus        76 ~l~~L~~L~Ls~N~l~~i~~~~f~~-------------------l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           76 NMTQLLTLILSYNRLRCIPPRTFDG-------------------LKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTT-------------------CTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCccCEeCHHHhCC-------------------CCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCC
Confidence            9999999999999998555544444                   4566777777777776 4444344477777777777


Q ss_pred             Cccc
Q 042092          174 NKLS  177 (179)
Q Consensus       174 n~l~  177 (179)
                      |++.
T Consensus       136 N~~~  139 (193)
T 2wfh_A          136 NPLY  139 (193)
T ss_dssp             SCEE
T ss_pred             CCee
Confidence            7664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.72  E-value=2.5e-17  Score=134.23  Aligned_cols=131  Identities=26%  Similarity=0.285  Sum_probs=110.7

Q ss_pred             ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccc
Q 042092           47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK  126 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~  126 (179)
                      ..+++|++++|.|+ ...+..|.++++|++|++++|.++.+.+..|..+++|++|++++|++.+..+..|..+++|+++.
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            46899999999998 56677899999999999999999977778899999999999999999866667889999999866


Q ss_pred             ccC-----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          127 LTC-----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       127 l~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +.+     ..+..++.+++|++|++++|.+.+......+..+++|++|++++|++++
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            553     3445688899999999999999873322334459999999999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=6.7e-17  Score=116.42  Aligned_cols=134  Identities=16%  Similarity=0.089  Sum_probs=114.1

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ..++.|++++|.+++..+.          ..+..+++|++|++++|.++ ...+..|.++++|++|++++|.++...+..
T Consensus        32 ~~~~~L~L~~N~l~~~~~~----------~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  100 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEAT----------GIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKM  100 (220)
T ss_dssp             TTCSEEECCSSCCCEECCC----------CCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred             CCCCEEEcCCCcCCccCch----------hhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhH
Confidence            3578999999999865441          35788999999999999997 466668999999999999999999777778


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCccccccCCCcccEEEcCCCccCCchh
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSISSCIFELVNLTKVSLSSNNLSSNVE  156 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~  156 (179)
                      |..+++|++|++++|.+.+..|..+..+++|+.+.+.     +..|..+..+++|++|++++|.+....+
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999999999999999997878899999988885554     4557788889999999999999986443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=1.1e-16  Score=119.98  Aligned_cols=125  Identities=26%  Similarity=0.303  Sum_probs=65.2

Q ss_pred             hhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092           43 LFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL  122 (179)
Q Consensus        43 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L  122 (179)
                      +..+++|++|++++|.++  ..+ .+..+++|+.|++++|.+++.  +.+..+++|++|++++|.+.+.  ..+..+++|
T Consensus        86 l~~l~~L~~L~l~~n~l~--~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  158 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVK--DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL  158 (291)
T ss_dssp             GTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             cccCCCCCEEECCCCcCC--CCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC
Confidence            455555555555555554  122 245555555555555555532  3445555666666666655532  345555555


Q ss_pred             ccccccCCccc---cccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          123 REKKLTCSISS---CIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       123 ~~~~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +.+.+.+....   .+..+++|++|++++|.+.+ ++.  +..+++|+.|++++|+++
T Consensus       159 ~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~-l~~--l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          159 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LRA--LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEEEEEEEEE
T ss_pred             CEEEccCCccccchhhcCCCccCEEECCCCcCCC-Chh--hccCCCCCEEECcCCccc
Confidence            55444321110   14555666666666666665 332  233666666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.9e-17  Score=124.87  Aligned_cols=155  Identities=17%  Similarity=0.089  Sum_probs=100.1

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccch--hccccceEEEeeCccccCCccc----ccccCCCCccEEEeccCCC
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESL--FFILHSQNLNLCGNDFNYSKIS----YGFSQFRSLTILNLRHYNF   84 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~----~~~~~l~~L~~L~l~~~~l   84 (179)
                      .++|+.|++++|.+.+..|           ..+  ..+++|++|++++|.+++ ..+    ..+..+++|++|++++|.+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~-----------~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l  157 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMP-----------PLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHS  157 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCC-----------CCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred             cCceeEEEeeCCEeccchh-----------hhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCc
Confidence            3568999999999988777           566  778888888888888863 222    2344688888888888888


Q ss_pred             CCCCCccccCCCCccEEEcCCCccCCC--C--CCcCCCCcccccccccCCccc--------cccCCCcccEEEcCCCccC
Q 042092           85 RGSIPPSFCNLTQLMHLDLSSNILSGH--I--PSSLSNLEQLREKKLTCSISS--------CIFELVNLTKVSLSSNNLS  152 (179)
Q Consensus        85 ~~~~~~~l~~l~~L~~l~l~~n~l~~~--~--~~~~~~l~~L~~~~l~~~~~~--------~~~~~~~L~~L~l~~n~~~  152 (179)
                      ....+..+..+++|++|++++|.+.+.  +  +..+..+++|+.+.+.+....        .+..+++|++|++++|.+.
T Consensus       158 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~  237 (310)
T 4glp_A          158 PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLR  237 (310)
T ss_dssp             CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred             chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence            877777888888888888888886531  1  222345666666555442221        1234456666666666666


Q ss_pred             CchhhHhhcC--CCCCcEEEccCCccc
Q 042092          153 SNVELYMFTK--LKSLEVLDLSYNKLS  177 (179)
Q Consensus       153 ~~~~~~~~~~--l~~L~~L~l~~n~l~  177 (179)
                      +..|..+...  +++|++|++++|.++
T Consensus       238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          238 ATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             ccchhhHHhccCcCcCCEEECCCCCCC
Confidence            5434333321  145556666555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=5.8e-18  Score=127.76  Aligned_cols=152  Identities=18%  Similarity=0.119  Sum_probs=91.3

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCc-c--cccccCCCCccEEEeccCCCCCC
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSK-I--SYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~--~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      .++|+.|++++|.+.+..+           ..+..+++|++|++++|.+.+.. .  ...+..+++|++|++++|.++ .
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  211 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSC-----------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-T  211 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCT-----------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-C
T ss_pred             ccCCCEEEeeCCCcchhhH-----------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-c
Confidence            4455555555555544444           45555666666666666543100 1  111245566666666666654 2


Q ss_pred             CCc----cccCCCCccEEEcCCCccCCCCCCcCCCC---cccccccccC----CccccccCCCcccEEEcCCCccCCchh
Q 042092           88 IPP----SFCNLTQLMHLDLSSNILSGHIPSSLSNL---EQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVE  156 (179)
Q Consensus        88 ~~~----~l~~l~~L~~l~l~~n~l~~~~~~~~~~l---~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~  156 (179)
                      .+.    .+..+++|++|++++|.+.+..|..+..+   ++|+.+++++    .+|..+.  ++|++|++++|.+++ +|
T Consensus       212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~  288 (310)
T 4glp_A          212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-AP  288 (310)
T ss_dssp             HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CC
T ss_pred             hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-Cc
Confidence            222    13456788888888888876667666655   4677655554    3344332  678888888888887 33


Q ss_pred             hHhhcCCCCCcEEEccCCccccC
Q 042092          157 LYMFTKLKSLEVLDLSYNKLSLC  179 (179)
Q Consensus       157 ~~~~~~l~~L~~L~l~~n~l~~~  179 (179)
                      .  ...+++|+.|++++|+++.+
T Consensus       289 ~--~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          289 Q--PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             C--TTSCCCCSCEECSSTTTSCC
T ss_pred             h--hhhCCCccEEECcCCCCCCC
Confidence            2  34478888888888888753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=1.2e-16  Score=119.75  Aligned_cols=147  Identities=24%  Similarity=0.288  Sum_probs=121.4

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      ..+++|+.|++++|.+. .++            .+..+++|++|++++|.++ . .+. +..+++|++|++++|.+++ .
T Consensus        43 ~~l~~L~~L~l~~~~i~-~~~------------~~~~l~~L~~L~L~~n~l~-~-~~~-l~~l~~L~~L~l~~n~l~~-~  105 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-SVQ------------GIQYLPNVTKLFLNGNKLT-D-IKP-LANLKNLGWLFLDENKVKD-L  105 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCC-C-CGG-GTTCTTCCEEECCSSCCCC-G
T ss_pred             hhcCcccEEEccCCCcc-cCh------------hHhcCCCCCEEEccCCccC-C-Ccc-cccCCCCCEEECCCCcCCC-C
Confidence            45688999999999988 455            4888999999999999997 3 333 8899999999999999985 3


Q ss_pred             CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc---ccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS---SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                       +.+..+++|++|++++|.+.+.  +.+..+++|+.+.+.+...   ..+..+++|++|++++|.+.+..+   +..+++
T Consensus       106 -~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~  179 (291)
T 1h6t_A          106 -SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTK  179 (291)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTT
T ss_pred             -hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh---hcCCCc
Confidence             3488999999999999999843  4677888888877765322   456788999999999999998444   445999


Q ss_pred             CcEEEccCCcccc
Q 042092          166 LEVLDLSYNKLSL  178 (179)
Q Consensus       166 L~~L~l~~n~l~~  178 (179)
                      |+.|++++|.+++
T Consensus       180 L~~L~L~~N~i~~  192 (291)
T 1h6t_A          180 LQNLYLSKNHISD  192 (291)
T ss_dssp             CCEEECCSSCCCB
T ss_pred             cCEEECCCCcCCC
Confidence            9999999999875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=1.4e-16  Score=110.86  Aligned_cols=131  Identities=25%  Similarity=0.246  Sum_probs=95.1

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF   92 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   92 (179)
                      ..+.++++++.++ .+|           ..+  .+.+++|++++|.++ ...+..+..+++|++|++++|.++...+..+
T Consensus         8 ~~~~l~~~~~~l~-~~p-----------~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   72 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVP-----------TGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF   72 (177)
T ss_dssp             ETTEEECCSSCCS-SCC-----------TTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CCCEEEecCCCCc-cCC-----------CCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHc
Confidence            4578899999887 555           333  368999999999997 4556667899999999999999997666678


Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEcc
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLS  172 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  172 (179)
                      ..+++|+++++++|.+.+..+..+..+                   ++|++|++++|.+.+ ++...+..+++|++|+++
T Consensus        73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l-------------------~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           73 DKLTKLTILYLHENKLQSLPNGVFDKL-------------------TQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTC-------------------TTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECC
T ss_pred             cCCCccCEEECCCCCccccCHHHhhCC-------------------cccCEEECcCCcceE-eCHHHhcCCcccCEEEec
Confidence            899999999999999885444444444                   456666666666665 433333446666666666


Q ss_pred             CCcccc
Q 042092          173 YNKLSL  178 (179)
Q Consensus       173 ~n~l~~  178 (179)
                      +|++++
T Consensus       133 ~N~~~~  138 (177)
T 2o6r_A          133 TNPWDC  138 (177)
T ss_dssp             SSCBCC
T ss_pred             CCCeec
Confidence            666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=1.3e-16  Score=120.42  Aligned_cols=148  Identities=20%  Similarity=0.238  Sum_probs=121.8

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      +..+++|+.|++++|.+++ ++            .+..+++|++|++++|.+++  .+. +..+++|+.|++++|.+++.
T Consensus        81 ~~~l~~L~~L~L~~n~l~~-~~------------~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~  144 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKN-VS------------AIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNI  144 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSC-CG------------GGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             HccCCCCCEEEccCCcCCC-ch------------hhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcC
Confidence            5567899999999999884 44            68889999999999999972  333 88999999999999999855


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccc---cccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISS---CIFELVNLTKVSLSSNNLSSNVELYMFTKLK  164 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  164 (179)
                       +. +..+++|++|++++|.+.+ ++. +..+++|+.+.+.+....   .+..+++|++|++++|.+.+..+   +..++
T Consensus       145 -~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~  217 (308)
T 1h6u_A          145 -SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP---LANTS  217 (308)
T ss_dssp             -GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG---GTTCT
T ss_pred             -cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc---ccCCC
Confidence             33 8899999999999999984 343 888888888776653222   26778999999999999998443   45599


Q ss_pred             CCcEEEccCCcccc
Q 042092          165 SLEVLDLSYNKLSL  178 (179)
Q Consensus       165 ~L~~L~l~~n~l~~  178 (179)
                      +|+.|++++|++++
T Consensus       218 ~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          218 NLFIVTLTNQTITN  231 (308)
T ss_dssp             TCCEEEEEEEEEEC
T ss_pred             CCCEEEccCCeeec
Confidence            99999999999876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=6.6e-18  Score=142.67  Aligned_cols=153  Identities=17%  Similarity=0.172  Sum_probs=74.4

Q ss_pred             hhcccCceeeecccccCCCC-----------------CCcchhhhheecccchh--ccccceEEEeeCccccCCcccccc
Q 042092            8 CARNCAFMNRLLHYSCLSNS-----------------FPSRKKLLIFALNESLF--FILHSQNLNLCGNDFNYSKISYGF   68 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~-----------------~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~   68 (179)
                      +..+++|+.|++++|.+++.                 +|           ..+.  .+++|++|++++|.+. ...|..+
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-----------~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l  511 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-----------EELSWSNLKDLTDVELYNCPNM-TQLPDFL  511 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-----------SCCCGGGCTTCCEEEEESCTTC-CSCCGGG
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-----------hhhhhccCCCCCEEECcCCCCC-ccChHHH
Confidence            44566777777777777652                 45           4444  5666666666666554 2445555


Q ss_pred             cCCCCccEEEeccCC-CCC-CCCccccCC-------CCccEEEcCCCccCCCCCC--cCCCCcccccccccC----Cccc
Q 042092           69 SQFRSLTILNLRHYN-FRG-SIPPSFCNL-------TQLMHLDLSSNILSGHIPS--SLSNLEQLREKKLTC----SISS  133 (179)
Q Consensus        69 ~~l~~L~~L~l~~~~-l~~-~~~~~l~~l-------~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~~~l~~----~~~~  133 (179)
                      .++++|+.|++++|. +++ .+|..++.+       ++|++|++++|.+. .+|.  .+..+++|+.+.+.+    .+| 
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-
Confidence            555555555555555 443 334333222       25555555555554 4444  444444444433221    222 


Q ss_pred             cccCCCcccEEEcCCCccCCchhhHhhcCCCC-CcEEEccCCcc
Q 042092          134 CIFELVNLTKVSLSSNNLSSNVELYMFTKLKS-LEVLDLSYNKL  176 (179)
Q Consensus       134 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l  176 (179)
                      .+..+++|+.|++++|.+.. +|..+.. +++ |+.|++++|.+
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~~-lp~~l~~-l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIEE-IPEDFCA-FTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CCCTTSEESEEECCSSCCSC-CCTTSCE-ECTTCCEEECCSSCC
T ss_pred             hhcCCCcceEEECcCCcccc-chHHHhh-ccccCCEEECcCCCC
Confidence            33444444444444444442 3333222 333 44444444433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=2.6e-17  Score=111.42  Aligned_cols=131  Identities=17%  Similarity=0.111  Sum_probs=104.8

Q ss_pred             ccCceeeecccccCC-CCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092           11 NCAFMNRLLHYSCLS-NSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP   89 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   89 (179)
                      .++++.|++++|.++ +.+|           ..+..+++|++|++++|.+++ .  ..+..+++|++|++++|.+++..|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLE-----------GLTDEFEELEFLSTINVGLTS-I--ANLPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCC-----------SCCTTCTTCCEEECTTSCCCC-C--TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred             CccCeEEEccCCcCChhHHH-----------HHHhhcCCCcEEECcCCCCCC-c--hhhhcCCCCCEEECCCCcccchHH
Confidence            478899999999998 6777           677889999999999999973 3  667889999999999999987677


Q ss_pred             ccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchh--hHhhcCCCCCc
Q 042092           90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVE--LYMFTKLKSLE  167 (179)
Q Consensus        90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~  167 (179)
                      ..+..+++|+++++++|.+.+. +                 .+..+..+++|++|++++|.+.+..+  ...+..+++|+
T Consensus        82 ~~~~~l~~L~~L~ls~N~i~~~-~-----------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSGNKIKDL-S-----------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             HHHHHCTTCCEEECTTSCCCSH-H-----------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             HHhhhCCCCCEEECCCCcCCCh-H-----------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            7777789999999999988732 1                 12345566789999999999988443  13445599999


Q ss_pred             EEEccC
Q 042092          168 VLDLSY  173 (179)
Q Consensus       168 ~L~l~~  173 (179)
                      .|++++
T Consensus       144 ~L~l~d  149 (149)
T 2je0_A          144 YLDGYD  149 (149)
T ss_dssp             EETTBC
T ss_pred             cccCCC
Confidence            999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=1.3e-17  Score=126.20  Aligned_cols=81  Identities=17%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP   89 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   89 (179)
                      ..++|+.|++++|.+++..+           ..+..+++|++|++++|.++ ...+  +..+++|++|++++|.+++. +
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~~l-~   96 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISA-----------ADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQEL-L   96 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCH-----------HHHTTCTTCCEEECTTSCCE-EEEE--ETTCTTCCEEECCSSEEEEE-E
T ss_pred             cCCCCCEEECcCCccCcCCH-----------HHhhCCCcCCEEECCCCcCC-cchh--hhhcCCCCEEECcCCccccc-c
Confidence            35689999999999987666           67888999999999999886 2222  78888888888888887632 1


Q ss_pred             ccccCCCCccEEEcCCCccC
Q 042092           90 PSFCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        90 ~~l~~l~~L~~l~l~~n~l~  109 (179)
                          ..++|+++++++|.+.
T Consensus        97 ----~~~~L~~L~l~~n~l~  112 (317)
T 3o53_A           97 ----VGPSIETLHAANNNIS  112 (317)
T ss_dssp             ----ECTTCCEEECCSSCCS
T ss_pred             ----CCCCcCEEECCCCccC
Confidence                2245555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.8e-16  Score=117.07  Aligned_cols=147  Identities=20%  Similarity=0.177  Sum_probs=114.9

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ...+++|+.|++++|.++ .++            .+..+++|++|++++|.++ . .+. +..+++|+.|++++|.+++.
T Consensus        37 ~~~l~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~L~~N~i~-~-~~~-l~~l~~L~~L~L~~N~l~~l  100 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ-SLA------------GMQFFTNLKELHLSHNQIS-D-LSP-LKDLTKLEELSVNRNRLKNL  100 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCC-C-CGG-GTTCSSCCEEECCSSCCSCC
T ss_pred             hhhcCcCcEEECcCCCcc-cch------------HHhhCCCCCEEECCCCccC-C-Chh-hccCCCCCEEECCCCccCCc
Confidence            455688899999999887 455            5788999999999999997 3 333 88999999999999998853


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc---ccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS---SCIFELVNLTKVSLSSNNLSSNVELYMFTKLK  164 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  164 (179)
                       +.. .. ++|++|++++|.+.+ + +.+..+++|+.+.+.++..   ..+..+++|++|++++|.+.+.  .. +..++
T Consensus       101 -~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~  172 (263)
T 1xeu_A          101 -NGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GG-LTRLK  172 (263)
T ss_dssp             -TTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TT-STTCC
T ss_pred             -Ccc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HH-hccCC
Confidence             433 23 889999999999984 3 3578888888866664322   2567788999999999999884  33 44599


Q ss_pred             CCcEEEccCCcccc
Q 042092          165 SLEVLDLSYNKLSL  178 (179)
Q Consensus       165 ~L~~L~l~~n~l~~  178 (179)
                      +|+.|++++|++++
T Consensus       173 ~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          173 KVNWIDLTGQKCVN  186 (263)
T ss_dssp             CCCEEEEEEEEEEC
T ss_pred             CCCEEeCCCCcccC
Confidence            99999999998865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=3.9e-17  Score=130.43  Aligned_cols=155  Identities=17%  Similarity=0.074  Sum_probs=72.6

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccc----------------ccccC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKIS----------------YGFSQ   70 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~----------------~~~~~   70 (179)
                      .+..+++|+.|++++|.+++..|             +..+++|++|++++|.+++ ..+                .....
T Consensus        53 ~~~~l~~L~~L~Ls~N~l~~~~~-------------l~~l~~L~~L~Ls~N~l~~-l~~~~~L~~L~L~~N~l~~~~~~~  118 (487)
T 3oja_A           53 DLAPFTKLELLNLSSNVLYETLD-------------LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSR  118 (487)
T ss_dssp             GGTTCTTCCEEECTTSCCEEEEE-------------CTTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCCCEEECC
T ss_pred             HHhCCCCCCEEEeeCCCCCCCcc-------------cccCCCCCEEEecCCcCCC-CCCCCCcCEEECcCCcCCCCCccc
Confidence            44566778888888887764322             4444444444444444431 000                00122


Q ss_pred             CCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCC-CCcccccccccCCccc---cccCCCcccEEEc
Q 042092           71 FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLS-NLEQLREKKLTCSISS---CIFELVNLTKVSL  146 (179)
Q Consensus        71 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~~~l~~~~~~---~~~~~~~L~~L~l  146 (179)
                      +++|+.|++++|.+++..|..++.+++|++|++++|.+.+..|..+. .+++|+.++++++...   ....+++|++|++
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L  198 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL  198 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEEC
Confidence            34555555555555544455555555566666666655544444443 3444444333322111   1112344444444


Q ss_pred             CCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          147 SSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       147 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      ++|.+++ +|..+.. +++|+.|++++|.++
T Consensus       199 s~N~l~~-~~~~~~~-l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          199 SSNKLAF-MGPEFQS-AAGVTWISLRNNKLV  227 (487)
T ss_dssp             CSSCCCE-ECGGGGG-GTTCSEEECTTSCCC
T ss_pred             CCCCCCC-CCHhHcC-CCCccEEEecCCcCc
Confidence            4444444 2222222 444444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.69  E-value=7.4e-17  Score=129.33  Aligned_cols=130  Identities=20%  Similarity=0.245  Sum_probs=92.0

Q ss_pred             hccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC--CCCccccCCCCccEEEcCCCccCCCCCC-cCCCCc
Q 042092           44 FFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG--SIPPSFCNLTQLMHLDLSSNILSGHIPS-SLSNLE  120 (179)
Q Consensus        44 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~l~l~~n~l~~~~~~-~~~~l~  120 (179)
                      ..++.|++|++++|.++ ...+..+..+++|++|++++|.+++  ..|..+..+++|+++++++|.+.+.+|. .+..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            45667777777777776 3455667777778888888777764  3345567777888888888877754554 366667


Q ss_pred             ccccccccCC-----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          121 QLREKKLTCS-----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       121 ~L~~~~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +|+.+++.+.     .+..+.  ++|++|++++|.++. +|..++. +++|++|++++|+++.
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~-l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVK-LEALQELNVASNQLKS  458 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGG-CTTCCEEECCSSCCCC
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhc-CCCCCEEECCCCcCCc
Confidence            7776555543     222222  689999999999986 7777774 9999999999998864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.69  E-value=4.1e-16  Score=118.99  Aligned_cols=158  Identities=22%  Similarity=0.267  Sum_probs=74.2

Q ss_pred             hhcccCceeeecccccCCCCCCcch--hhh---------heecccchhccccceEEEeeCccccCCcccccccCCCCccE
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRK--KLL---------IFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTI   76 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~--~~~---------~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~   76 (179)
                      ....++|+.|++++|.+.+ ++...  +.+         +... ..+..+++|++|++++|.++ . .+. +..+++|+.
T Consensus       173 ~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~  247 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKIT-D-LSP-LANLSQLTW  247 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCC-C-CGG-GTTCTTCCE
T ss_pred             hccCCCCCEEEccCCcccc-cccccCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCccC-C-Ccc-hhcCCCCCE
Confidence            3456677778888777763 33000  000         0000 01444455555555555554 1 121 445555555


Q ss_pred             EEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCcccEEEcCCCcc
Q 042092           77 LNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLTKVSLSSNNL  151 (179)
Q Consensus        77 L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~~  151 (179)
                      |++++|.++..  +.+..+++|+++++++|.+.+.  +.+..+++|+.+.+.+     ..+..+..+++|++|++++|.+
T Consensus       248 L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          248 LEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             EECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence            55555555432  3344555555555555555422  2344444454433332     2233344555566666666665


Q ss_pred             CCchhhHhhcCCCCCcEEEccCCccc
Q 042092          152 SSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       152 ~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      ++..|  + ..+++|+.|++++|+|+
T Consensus       324 ~~~~~--~-~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          324 TDIRP--L-ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCGG--G-GGCTTCSEESSSCC---
T ss_pred             ccccC--h-hhhhccceeehhhhccc
Confidence            55333  2 22556666666666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.69  E-value=1e-15  Score=116.80  Aligned_cols=152  Identities=19%  Similarity=0.216  Sum_probs=102.5

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCC--------------------ccccc
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYS--------------------KISYG   67 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~--------------------~~~~~   67 (179)
                      +...++|+.|++++|.+.+ ++            .+..+++|++|++++|.+.+.                    ..+. 
T Consensus       151 ~~~l~~L~~L~l~~~~~~~-~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-  216 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKD-VT------------PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-  216 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG------------GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             hhhCCCCcEEEecCCCcCC-ch------------hhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-
Confidence            4567899999999999874 33            244555555555555554310                    1111 


Q ss_pred             ccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc---ccccCCCcccEE
Q 042092           68 FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS---SCIFELVNLTKV  144 (179)
Q Consensus        68 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L  144 (179)
                      +..+++|+.|++++|.+++. +. +..+++|+++++++|.+.+.  +.+..+++|+.+.+.+...   ..+..+++|++|
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  292 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSL  292 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEE
Confidence            55667777777777777643 33 66777777777777777632  4566777777766654322   345677889999


Q ss_pred             EcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          145 SLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       145 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      ++++|.+.+..+..+.. +++|+.|++++|++++
T Consensus       293 ~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITD  325 (347)
T ss_dssp             ECCSSCCCGGGHHHHHT-CTTCSEEECCSSSCCC
T ss_pred             ECcCCcCCCcChhHhhc-cccCCEEEccCCcccc
Confidence            99999998855555544 9999999999998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.69  E-value=2.8e-16  Score=132.87  Aligned_cols=155  Identities=21%  Similarity=0.215  Sum_probs=121.5

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+.+..+           ..+..+++|+.|++++|.++ ...+..|.++++|++|++++|.+++..+..
T Consensus       266 ~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  333 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNS-----------RVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSN  333 (844)
T ss_dssp             SCCCEEECTTCCCCEECS-----------CCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred             CCccEEECCCCcccccCh-----------hhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence            679999999999987767           77888999999999999997 466778899999999999999998788888


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCccc--------------------EEEcCCCcc
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLT--------------------KVSLSSNNL  151 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~--------------------~L~l~~n~~  151 (179)
                      +..+++|+++++++|.+....+..+..+++|+.+.+.++....+..+++|+                    .+++++|.+
T Consensus       334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l  413 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL  413 (844)
T ss_dssp             CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence            999999999999999998676778888888888777655444443344444                    455555555


Q ss_pred             CCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          152 SSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       152 ~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      .+.........+++|+.|++++|++++
T Consensus       414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~  440 (844)
T 3j0a_A          414 ENLDILYFLLRVPHLQILILNQNRFSS  440 (844)
T ss_dssp             CSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred             ccCchhhhhhcCCccceeeCCCCcccc
Confidence            542222333458999999999998874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=5.7e-16  Score=126.58  Aligned_cols=147  Identities=24%  Similarity=0.256  Sum_probs=94.3

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      +..+++|+.|++++|.+.+ ++           . +..+++|+.|++++|.+.+  .+ .+..+++|+.|++++|.+.+.
T Consensus        61 l~~l~~L~~L~Ls~N~l~~-~~-----------~-l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l  124 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTD-IK-----------P-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDI  124 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCC-CG-----------G-GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCC
T ss_pred             HccCCCCCEEEeeCCCCCC-Ch-----------h-hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCC
Confidence            3445666666666666653 33           2 6667777777777777752  22 466777777777777777642


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKL  163 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l  163 (179)
                        +.+..+++|+.|++++|.+.+.  ..+..+++|+.+.+.++    .+. +..+++|+.|++++|.+.+ ++ . +..+
T Consensus       125 --~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~-~-l~~l  196 (605)
T 1m9s_A          125 --NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-A-LAGL  196 (605)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-G-GTTC
T ss_pred             --ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC-Ch-H-HccC
Confidence              3466777777777777777633  45666666666555432    111 6667778888888887776 33 2 3347


Q ss_pred             CCCcEEEccCCcccc
Q 042092          164 KSLEVLDLSYNKLSL  178 (179)
Q Consensus       164 ~~L~~L~l~~n~l~~  178 (179)
                      ++|+.|++++|++++
T Consensus       197 ~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          197 KNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCSEEECCSEEEEC
T ss_pred             CCCCEEEccCCcCcC
Confidence            788888888877764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.68  E-value=9.5e-17  Score=121.48  Aligned_cols=127  Identities=18%  Similarity=0.152  Sum_probs=94.7

Q ss_pred             cccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcccc-CCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092           46 ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFC-NLTQLMHLDLSSNILSGHIPSSLSNLEQLRE  124 (179)
Q Consensus        46 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  124 (179)
                      +++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+. +. ...+++|+.
T Consensus       119 ~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~  195 (317)
T 3o53_A          119 GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKT  195 (317)
T ss_dssp             CSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCE
T ss_pred             cCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCE
Confidence            567888888888887 45566677888888888888888866666653 678888888888888743 33 234667777


Q ss_pred             ccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          125 KKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       125 ~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +.+++    .++..+..+++|++|++++|.+.+ +|..+. .+++|+.|++++|+++
T Consensus       196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~-~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALR-FSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCC-CCTTCCEEECTTCCCB
T ss_pred             EECCCCcCCcchhhhcccCcccEEECcCCcccc-hhhHhh-cCCCCCEEEccCCCcc
Confidence            65554    244457778889999999999986 666544 4889999999999886

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=6.1e-16  Score=126.41  Aligned_cols=148  Identities=24%  Similarity=0.284  Sum_probs=122.8

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ...+.+|+.|++++|.+. .++            .+..+++|+.|++++|.++ .. +. +..+++|+.|++++|.+.+ 
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~------------~l~~l~~L~~L~Ls~N~l~-~~-~~-l~~l~~L~~L~Ls~N~l~~-  101 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ------------GIQYLPNVTKLFLNGNKLT-DI-KP-LTNLKNLGWLFLDENKIKD-  101 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT------------TGGGCTTCCEEECTTSCCC-CC-GG-GGGCTTCCEEECCSSCCCC-
T ss_pred             hhcCCCCCEEECcCCCCC-CCh------------HHccCCCCCEEEeeCCCCC-CC-hh-hccCCCCCEEECcCCCCCC-
Confidence            455788999999999987 455            5889999999999999997 33 33 8899999999999999984 


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc---ccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS---SCIFELVNLTKVSLSSNNLSSNVELYMFTKLK  164 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  164 (179)
                      ++ .+..+++|++|++++|.+.+ + +.+..+++|+.+.+.+...   ..+..+++|+.|++++|.+.+..+   +..++
T Consensus       102 l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~  175 (605)
T 1m9s_A          102 LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLT  175 (605)
T ss_dssp             CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCT
T ss_pred             Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh---hccCC
Confidence            33 68899999999999999984 3 4588888898877765322   457788999999999999998555   44599


Q ss_pred             CCcEEEccCCcccc
Q 042092          165 SLEVLDLSYNKLSL  178 (179)
Q Consensus       165 ~L~~L~l~~n~l~~  178 (179)
                      +|+.|++++|+|++
T Consensus       176 ~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          176 KLQNLYLSKNHISD  189 (605)
T ss_dssp             TCCEEECCSSCCCB
T ss_pred             CCCEEECcCCCCCC
Confidence            99999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=1.2e-16  Score=111.14  Aligned_cols=135  Identities=19%  Similarity=0.182  Sum_probs=101.7

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccc-cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFIL-HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      +.....++.|++++|.++ .++           . +..+. +|++|++++|.++ . . ..+..+++|++|++++|.++.
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~-----------~-~~~~~~~L~~L~Ls~N~l~-~-~-~~l~~l~~L~~L~Ls~N~l~~   78 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIE-----------N-LGATLDQFDAIDFSDNEIR-K-L-DGFPLLRRLKTLLVNNNRICR   78 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCC-----------C-GGGGTTCCSEEECCSSCCC-E-E-CCCCCCSSCCEEECCSSCCCE
T ss_pred             cCCcCCceEEEeeCCCCc-hhH-----------H-hhhcCCCCCEEECCCCCCC-c-c-cccccCCCCCEEECCCCcccc
Confidence            445678899999999988 456           3 55554 8999999999997 2 3 568889999999999999985


Q ss_pred             CCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchhhH---hhcCC
Q 042092           87 SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELY---MFTKL  163 (179)
Q Consensus        87 ~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~l  163 (179)
                      ..+..+..+++|+++++++|.+. .+|.                 ...+..+++|++|++++|.+.. .+..   .+..+
T Consensus        79 ~~~~~~~~l~~L~~L~L~~N~i~-~~~~-----------------~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l  139 (176)
T 1a9n_A           79 IGEGLDQALPDLTELILTNNSLV-ELGD-----------------LDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKV  139 (176)
T ss_dssp             ECSCHHHHCTTCCEEECCSCCCC-CGGG-----------------GGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHC
T ss_pred             cCcchhhcCCCCCEEECCCCcCC-cchh-----------------hHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHC
Confidence            54444588999999999999886 3332                 0134456788999999999886 5543   34448


Q ss_pred             CCCcEEEccCCccc
Q 042092          164 KSLEVLDLSYNKLS  177 (179)
Q Consensus       164 ~~L~~L~l~~n~l~  177 (179)
                      ++|+.||++.|.+.
T Consensus       140 ~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          140 PQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCSEETTEECCHH
T ss_pred             CccceeCCCcCCHH
Confidence            99999999888653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.67  E-value=4.4e-16  Score=126.12  Aligned_cols=147  Identities=21%  Similarity=0.153  Sum_probs=116.6

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      |......+.+|+++|.++ .+|           ..+.  +++++|++++|.++ ...+..|.++++|++|++++|.+++.
T Consensus        27 ~~~~~~~~~l~ls~~~L~-~ip-----------~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~   91 (562)
T 3a79_B           27 PFSNELESMVDYSNRNLT-HVP-----------KDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSL   91 (562)
T ss_dssp             ------CCEEECTTSCCC-SCC-----------TTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEE
T ss_pred             ccccCCCcEEEcCCCCCc-cCC-----------CCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcC
Confidence            433344488999999998 577           4443  78999999999998 56677899999999999999999988


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCCccCCchhhHhhc
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSNNLSSNVELYMFT  161 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  161 (179)
                      .|..|..+++|++|++++|.+. .+|..  .+++|+++++.+      ..|..++.+++|++|++++|.+.+...    .
T Consensus        92 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~  164 (562)
T 3a79_B           92 DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----L  164 (562)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----G
T ss_pred             CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----h
Confidence            8889999999999999999998 66665  678888866654      235678889999999999999987222    2


Q ss_pred             CCCCC--cEEEccCCcc
Q 042092          162 KLKSL--EVLDLSYNKL  176 (179)
Q Consensus       162 ~l~~L--~~L~l~~n~l  176 (179)
                      .+++|  +.|++++|.+
T Consensus       165 ~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          165 PVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             GGTTSCEEEEEEEESSC
T ss_pred             hhhhceeeEEEeecccc
Confidence            25555  9999999987

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.67  E-value=9.5e-16  Score=121.61  Aligned_cols=126  Identities=25%  Similarity=0.275  Sum_probs=73.2

Q ss_pred             hhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccc
Q 042092           43 LFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQL  122 (179)
Q Consensus        43 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L  122 (179)
                      +..+++|++|++++|.++ . .+. +..+++|+.|++++|.+.+..+  +..+++|+++++++|.+.+..|  +..+++|
T Consensus       261 ~~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  333 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQIS-N-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL  333 (466)
T ss_dssp             GTTCTTCSEEECCSSCCC-C-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             hhcCCCCCEEECCCCccC-c-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence            445555566666666554 1 222 4556666666666666553322  5556666666666666654333  4555556


Q ss_pred             ccccccCCc---cccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          123 REKKLTCSI---SSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       123 ~~~~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +.+.+.+..   ...+..+++|++|++++|.+.+..|   ...+++|+.|++++|++++
T Consensus       334 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          334 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred             CEeECCCCccCCchhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence            554444321   1345566777777777777777444   3347777777777777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.65  E-value=2.5e-17  Score=127.71  Aligned_cols=132  Identities=19%  Similarity=0.255  Sum_probs=83.4

Q ss_pred             ccceEEEeeCccccCCccc---ccccCCCCccEEEeccCCCCC-----CCCccccCCCCccEEEcCCCccC----CCCCC
Q 042092           47 LHSQNLNLCGNDFNYSKIS---YGFSQFRSLTILNLRHYNFRG-----SIPPSFCNLTQLMHLDLSSNILS----GHIPS  114 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~l~~~~l~~-----~~~~~l~~l~~L~~l~l~~n~l~----~~~~~  114 (179)
                      +.|++|++++|.++....+   ..+..+++|+.|++++|.++.     ..+..+..+++|++|++++|.+.    ..+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            5666666666666422233   344566677777777776652     12225666777777777777764    34566


Q ss_pred             cCCCCcccccccccCCc---------cccc--cCCCcccEEEcCCCccCC----chhhHhhcCCCCCcEEEccCCcccc
Q 042092          115 SLSNLEQLREKKLTCSI---------SSCI--FELVNLTKVSLSSNNLSS----NVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       115 ~~~~l~~L~~~~l~~~~---------~~~~--~~~~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      .+..+++|+.+.++++.         +..+  +.+++|++|++++|.+.+    .++..+...+++|+.|++++|++++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            66667777776655432         2333  236778888888888876    3555554447888888888888775

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=6.9e-16  Score=113.99  Aligned_cols=144  Identities=25%  Similarity=0.297  Sum_probs=115.3

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      +..++.++++++.+++ ++            .+..+++|++|++++|.++  ..+ .+..+++|+.|++++|.+++. ++
T Consensus        18 l~~l~~l~l~~~~i~~-~~------------~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L~~N~i~~~-~~   80 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTD-LV------------SQKELSGVQNFNGDNSNIQ--SLA-GMQFFTNLKELHLSHNQISDL-SP   80 (263)
T ss_dssp             HHHHHHHHHTCSCTTS-EE------------CHHHHTTCSEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCC-GG
T ss_pred             HHHHHHHHhcCCCccc-cc------------chhhcCcCcEEECcCCCcc--cch-HHhhCCCCCEEECCCCccCCC-hh
Confidence            5567788999988873 33            4788999999999999997  344 588999999999999999955 44


Q ss_pred             cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc---cccccCCCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI---SSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLE  167 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  167 (179)
                       +..+++|++|++++|.+.+ ++....  ++|+.+.+.+..   ...+..+++|++|++++|.+++ ++ .+ ..+++|+
T Consensus        81 -l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-~~-~l-~~l~~L~  153 (263)
T 1xeu_A           81 -LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-IV-ML-GFLSKLE  153 (263)
T ss_dssp             -GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB-CG-GG-GGCTTCC
T ss_pred             -hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC-Ch-HH-ccCCCCC
Confidence             8899999999999999984 444332  677776665432   2357788999999999999998 44 34 4499999


Q ss_pred             EEEccCCcccc
Q 042092          168 VLDLSYNKLSL  178 (179)
Q Consensus       168 ~L~l~~n~l~~  178 (179)
                      .|++++|++++
T Consensus       154 ~L~L~~N~i~~  164 (263)
T 1xeu_A          154 VLDLHGNEITN  164 (263)
T ss_dssp             EEECTTSCCCB
T ss_pred             EEECCCCcCcc
Confidence            99999999976

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=2.3e-15  Score=106.41  Aligned_cols=129  Identities=16%  Similarity=0.220  Sum_probs=108.1

Q ss_pred             chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcc
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ  121 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~  121 (179)
                      ....++++++|++++|.++  ..+ .+..+++|++|++++|.+. . ++.+..+++|+++++++|.+.+..+..+..+++
T Consensus        39 ~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  113 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS  113 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred             ChhhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence            3477899999999999997  344 5889999999999999765 3 357889999999999999998778888999999


Q ss_pred             cccccccC-----CccccccCCCcccEEEcCCCc-cCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          122 LREKKLTC-----SISSCIFELVNLTKVSLSSNN-LSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       122 L~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      |+.+.+.+     ..+..+..+++|++|++++|. +.+ ++ . +..+++|+.|++++|.+++
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~-l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-P-LKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-G-GGGCSSCCEEECTTBCCCC
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-h-hcCCCCCCEEECCCCCCcC
Confidence            99866654     346668889999999999998 666 55 3 4459999999999999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.62  E-value=9.9e-15  Score=115.75  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=21.0

Q ss_pred             ccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          135 IFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       135 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +..+++|++|++++|.+.+ ++ . +..+++|+.|++++|++++
T Consensus       327 ~~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSD-VS-S-LANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCCCB
T ss_pred             hccCccCCEeECCCCccCC-ch-h-hccCCCCCEEeCCCCccCc
Confidence            3444555555555555554 22 1 2235566666666665554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=3.6e-17  Score=124.30  Aligned_cols=150  Identities=21%  Similarity=0.214  Sum_probs=83.1

Q ss_pred             cCceeeecccccCCCC-CCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccC-CCCCC-C
Q 042092           12 CAFMNRLLHYSCLSNS-FPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY-NFRGS-I   88 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~   88 (179)
                      ++|+.|++++|.+++. ++           ..+..+++|++|++++|.++ ...+..+..+++|++|++++| .+++. .
T Consensus        93 ~~L~~L~L~~~~l~~~~~~-----------~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~~~~l~~~~l  160 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLH-----------GILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFAL  160 (336)
T ss_dssp             BCCCEEECTTCEECHHHHH-----------HHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred             CCCCEEEccCCCcCHHHHH-----------HHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEECCCCCCCCHHHH
Confidence            4455555555554432 33           44555666666666666654 234444556666666666666 44431 3


Q ss_pred             CccccCCCCccEEEcCCC-ccCCC-CCCcCCCCc-ccccccccCC--------ccccccCCCcccEEEcCCCc-cCCchh
Q 042092           89 PPSFCNLTQLMHLDLSSN-ILSGH-IPSSLSNLE-QLREKKLTCS--------ISSCIFELVNLTKVSLSSNN-LSSNVE  156 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n-~l~~~-~~~~~~~l~-~L~~~~l~~~--------~~~~~~~~~~L~~L~l~~n~-~~~~~~  156 (179)
                      +..+..+++|++|++++| .+.+. ++..+..++ +|+.+.+.+.        ++..+..+++|++|++++|. +++..+
T Consensus       161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  240 (336)
T 2ast_B          161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF  240 (336)
T ss_dssp             HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence            333455666666666666 55532 344455555 6666555442        12334456677777777776 554444


Q ss_pred             hHhhcCCCCCcEEEccCC
Q 042092          157 LYMFTKLKSLEVLDLSYN  174 (179)
Q Consensus       157 ~~~~~~l~~L~~L~l~~n  174 (179)
                      ..+.. +++|+.|++++|
T Consensus       241 ~~l~~-l~~L~~L~l~~~  257 (336)
T 2ast_B          241 QEFFQ-LNYLQHLSLSRC  257 (336)
T ss_dssp             GGGGG-CTTCCEEECTTC
T ss_pred             HHHhC-CCCCCEeeCCCC
Confidence            44444 677777777776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=5.6e-15  Score=104.17  Aligned_cols=112  Identities=24%  Similarity=0.257  Sum_probs=92.7

Q ss_pred             cCceeeecccccCCCCCCcchhhhheeccc-chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNE-SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      ..++.|++++|.+++..+           . .+..+++|++|++++|.++ ...+..|.++++|++|++++|.+++..+.
T Consensus        29 ~~l~~L~l~~n~i~~~~~-----------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   96 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISS-----------DGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             TTCSEEECCSCCCCSBCC-----------SCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             CCCCEEECCCCcCCccCC-----------ccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence            388999999999985544           3 3889999999999999998 56688899999999999999999988888


Q ss_pred             cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCc
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSN  154 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  154 (179)
                      .|..+++|++|++++|.+.+..|..+..++                   +|++|++++|.+...
T Consensus        97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------------------~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLN-------------------SLTSLNLASNPFNCN  141 (192)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTSSTTCT-------------------TCCEEECTTCCBCCS
T ss_pred             HhcCCCCCCEEECCCCcCCeeCHHHhhcCC-------------------CCCEEEeCCCCccCc
Confidence            899999999999999999876666665554                   556666666666553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=4.6e-17  Score=123.71  Aligned_cols=128  Identities=22%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCc-cccCCcccccccCCCCccEEEeccC-CCCCC-
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGN-DFNYSKISYGFSQFRSLTILNLRHY-NFRGS-   87 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-   87 (179)
                      .++|++|++++|.+++..+           ..+..+++|++|++++| .+++...+..+..+++|+.|++++| .+++. 
T Consensus       117 ~~~L~~L~L~~~~l~~~~~-----------~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  185 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIV-----------NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH  185 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHH-----------HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             CCCCCEEeCcCcccCHHHH-----------HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence            4455555555555444334           34444555555555555 3431123333444555555555555 44421 


Q ss_pred             CCccccCCC-CccEEEcCCC--ccC-CCCCCcCCCCcccccccccC------CccccccCCCcccEEEcCCC
Q 042092           88 IPPSFCNLT-QLMHLDLSSN--ILS-GHIPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSN  149 (179)
Q Consensus        88 ~~~~l~~l~-~L~~l~l~~n--~l~-~~~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n  149 (179)
                      .+..+..++ +|++|++++|  .++ ..++..+..+++|+.+.+.+      ..+..+..+++|++|++++|
T Consensus       186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            233344444 5555555555  222 12233333444444433322      22333444455555555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=2.5e-15  Score=115.17  Aligned_cols=155  Identities=18%  Similarity=0.075  Sum_probs=106.6

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccE-EEeccCCCCCCCCc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTI-LNLRHYNFRGSIPP   90 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~-L~l~~~~l~~~~~~   90 (179)
                      +.+++|++++|.++..-+           ..|..+++|++|++++|.+.+...+..|.+++++.. +.+..|++....|.
T Consensus        30 ~~l~~L~Ls~N~i~~i~~-----------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQK-----------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             TTCSEEEEESCCCSEECT-----------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCCCEEEccCCcCCCcCH-----------HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence            468899999999984333           568899999999999999863344567888888765 56677888877788


Q ss_pred             cccCCCCccEEEcCCCccCCCCCCcCCCCccccc--------------------------ccccC----CccccccCCCc
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE--------------------------KKLTC----SISSCIFELVN  140 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~--------------------------~~l~~----~~~~~~~~~~~  140 (179)
                      .|..+++|+++++++|.+....+..+....++..                          +.+.+    .++.......+
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~  178 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ  178 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence            8889999999999999887433333322222221                          11111    12223334456


Q ss_pred             ccEEEcCC-CccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          141 LTKVSLSS-NNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       141 L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      |+++++.+ |.+.. +|...+..+++|++||+++|+++.
T Consensus       179 L~~l~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          179 LDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             EEEEECTTCTTCCC-CCTTTTTTEECCSEEECTTSCCCC
T ss_pred             hhHHhhccCCcccC-CCHHHhccCcccchhhcCCCCcCc
Confidence            77777765 45554 666666668899999999998864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=1.4e-14  Score=117.57  Aligned_cols=134  Identities=19%  Similarity=0.188  Sum_probs=94.2

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ++|+.|++++|.+++ +|           . +..  +|++|++++|.+++  ++.   .+++|+.|++++|.+++ +|. 
T Consensus       100 ~~L~~L~Ls~N~l~~-ip-----------~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~-  157 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LP-----------E-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM-LPE-  157 (571)
T ss_dssp             TTCCEEECCSSCCSC-CC-----------C-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred             CCCCEEEccCCCCCC-cc-----------h-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc-CCC-
Confidence            455555555555553 44           3 332  77888888887762  443   57788888888888874 454 


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcc-------cEEEcCCCccCCchhhHhh
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNL-------TKVSLSSNNLSSNVELYMF  160 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~  160 (179)
                        .+++|++|++++|.+.+ +|. +.  ++|+.+++++    .+|. +..  +|       +.|++++|.++. +|..++
T Consensus       158 --~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~  227 (571)
T 3cvr_A          158 --LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENIL  227 (571)
T ss_dssp             --CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCC-CCGGGG
T ss_pred             --cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCccee-cCHHHh
Confidence              46788888999888874 666 54  6677755554    3344 332  67       999999999997 888788


Q ss_pred             cCCCCCcEEEccCCcccc
Q 042092          161 TKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~  178 (179)
                      . +++|+.|++++|+++|
T Consensus       228 ~-l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          228 S-LDPTCTIILEDNPLSS  244 (571)
T ss_dssp             G-SCTTEEEECCSSSCCH
T ss_pred             c-CCCCCEEEeeCCcCCC
Confidence            7 9999999999999976

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.59  E-value=2.4e-14  Score=113.46  Aligned_cols=143  Identities=17%  Similarity=0.160  Sum_probs=81.4

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      ...++|+.|++++|.+++ +|            .+..+++|++|++++|.+++  .+  +..+++|++|++++|.+++. 
T Consensus        39 ~~l~~L~~L~Ls~n~l~~-~~------------~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-  100 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITD-MT------------GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-  100 (457)
T ss_dssp             HHHTTCCEEECCSSCCCC-CT------------TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-
T ss_pred             hHcCCCCEEEccCCCccc-Ch------------hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-
Confidence            345777788888887774 34            35566666666666666652  22  55566666666666665533 


Q ss_pred             CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccc---------------------cccCC-cc--ccccCCCcccEE
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK---------------------KLTCS-IS--SCIFELVNLTKV  144 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~---------------------~l~~~-~~--~~~~~~~~L~~L  144 (179)
                      +  ++.+++|+++++++|.+.+ ++  +..+++|+.+                     .+.+. ..  ..+..+++|++|
T Consensus       101 ~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  175 (457)
T 3bz5_A          101 D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL  175 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred             e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence            2  5555566666666665553 22  4444444443                     33221 00  024455667777


Q ss_pred             EcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          145 SLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       145 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      ++++|.+++ ++   ...+++|+.|++++|.+++
T Consensus       176 ~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          176 DCSFNKITE-LD---VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             ECCSSCCCC-CC---CTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCccce-ec---cccCCCCCEEECcCCcCCe
Confidence            777777766 43   2336777777777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=1.7e-16  Score=122.98  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=39.2

Q ss_pred             CCCCccEEEcCCCccCC-----CCCCcCCCCcccccccccCC---------ccccccCCCcccEEEcCCCccCCch----
Q 042092           94 NLTQLMHLDLSSNILSG-----HIPSSLSNLEQLREKKLTCS---------ISSCIFELVNLTKVSLSSNNLSSNV----  155 (179)
Q Consensus        94 ~l~~L~~l~l~~n~l~~-----~~~~~~~~l~~L~~~~l~~~---------~~~~~~~~~~L~~L~l~~n~~~~~~----  155 (179)
                      .+++|++|++++|.+..     ..+..+..+++|+.+.+.++         ++..+..+++|++|++++|.+.+..    
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            34455555555554431     11224444455554444321         2334445555666666666655431    


Q ss_pred             hhHhh-cCCCCCcEEEccCCccc
Q 042092          156 ELYMF-TKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       156 ~~~~~-~~l~~L~~L~l~~n~l~  177 (179)
                      +..+. ..+++|+.|++++|.++
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHhhccCCCeEEEECcCCcCC
Confidence            22110 12555666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.7e-14  Score=101.87  Aligned_cols=110  Identities=22%  Similarity=0.241  Sum_probs=92.1

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.++ .+|           ..+..+++|++|++++|.++ ...+..|.++++|+.|++++|.++...+..
T Consensus        31 ~~l~~L~L~~n~i~-~ip-----------~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~   97 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVP-----------KELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRT   97 (193)
T ss_dssp             TTCCEEECCSSCCC-SCC-----------GGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred             CCCCEEECCCCcCc-hhH-----------HHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCccCEeCHHH
Confidence            57899999999998 778           78999999999999999998 566778999999999999999999888888


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~  153 (179)
                      |..+++|++|++++|.+....+..+..+                   ++|++|++++|.+..
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l-------------------~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEGAFNDL-------------------SALSHLAIGANPLYC  140 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTC-------------------TTCCEEECCSSCEEC
T ss_pred             hCCCCCCCEEECCCCCCCeeChhhhhcC-------------------ccccEEEeCCCCeec
Confidence            9999999999999999984444445444                   456666666666644

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=3.4e-16  Score=130.39  Aligned_cols=115  Identities=24%  Similarity=0.239  Sum_probs=84.6

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+..+..|+.|++++|.+.  ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             ----CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            56777788888888888885  34544557888888888888888 77777888888888888888887 6787788777


Q ss_pred             ccccccccC----CccccccCCCcccEEEcCCCccCCchhhHh
Q 042092          121 QLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYM  159 (179)
Q Consensus       121 ~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  159 (179)
                      +|+.+.+.+    .+|..++.+++|++|++++|.+.+.+|..+
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            777755543    456667778888888888888887555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.59  E-value=3.7e-14  Score=112.40  Aligned_cols=145  Identities=16%  Similarity=0.165  Sum_probs=89.7

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      .+...++|+.|++++|.+++ ++             +..+++|++|++++|.+++  .+  +..+++|++|++++|.+++
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~-~~-------------~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~  120 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITT-LD-------------LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK  120 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSC-CC-------------CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC
T ss_pred             hhcccCCCCEEEccCCcCCe-Ec-------------cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe
Confidence            34556778888888887774 23             4445555555555555542  11  4455555555555555543


Q ss_pred             CCCccccCCCCccEEEcCCCccCC---------------------CCCCcCCCCcccccccccCCccc--cccCCCcccE
Q 042092           87 SIPPSFCNLTQLMHLDLSSNILSG---------------------HIPSSLSNLEQLREKKLTCSISS--CIFELVNLTK  143 (179)
Q Consensus        87 ~~~~~l~~l~~L~~l~l~~n~l~~---------------------~~~~~~~~l~~L~~~~l~~~~~~--~~~~~~~L~~  143 (179)
                      . +  ++.+++|+++++++|.+.+                     .+  .+..+++|+.+.+.+....  .+..+++|+.
T Consensus       121 l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~  195 (457)
T 3bz5_A          121 L-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNR  195 (457)
T ss_dssp             C-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCE
T ss_pred             e-c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCE
Confidence            2 2  4444455555555544432                     22  3556667777655542211  2677899999


Q ss_pred             EEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          144 VSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       144 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      |++++|.+++ ++   +..+++|+.|++++|++++
T Consensus       196 L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          196 LNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             EECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC
T ss_pred             EECcCCcCCe-ec---cccCCCCCEEECcCCcccc
Confidence            9999999998 43   3459999999999999986

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=2.8e-14  Score=99.12  Aligned_cols=114  Identities=23%  Similarity=0.177  Sum_probs=93.9

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.++.|++++|.+++..+           ..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.++...+..
T Consensus        28 ~~l~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   95 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPH-----------GVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGV   95 (177)
T ss_dssp             TTCSEEECCSSCCCCCCT-----------TTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcEEEeCCCcccEeCH-----------HHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHH
Confidence            689999999999986555           56788999999999999997 456666889999999999999999777777


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchh
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVE  156 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  156 (179)
                      +..+++|+++++++|.+.+..+..+                   ..+++|++|++++|.+.+..+
T Consensus        96 ~~~l~~L~~L~l~~N~l~~~~~~~~-------------------~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKSVPDGIF-------------------DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTT-------------------TTCTTCCEEECCSSCBCCCHH
T ss_pred             hhCCcccCEEECcCCcceEeCHHHh-------------------cCCcccCEEEecCCCeeccCc
Confidence            8899999999999999873322222                   335678899999999988554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=1.1e-14  Score=98.43  Aligned_cols=113  Identities=24%  Similarity=0.244  Sum_probs=91.2

Q ss_pred             ccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092           45 FILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE  124 (179)
Q Consensus        45 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  124 (179)
                      ..+++++|++++|.+++...+..+..+++|+.|++++|.+++.  ..+..+++|+++++++|.+.+.+|.          
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~----------   82 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV----------   82 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH----------
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH----------
Confidence            3478999999999997335677788999999999999999865  7788999999999999998743333          


Q ss_pred             ccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          125 KKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       125 ~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                               .+..+++|++|++++|.+.+......+..+++|++|++++|++++
T Consensus        83 ---------~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           83 ---------LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ---------HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             ---------HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence                     233467899999999999983222334459999999999999876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=1.1e-16  Score=130.07  Aligned_cols=101  Identities=25%  Similarity=0.329  Sum_probs=67.2

Q ss_pred             CccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCC
Q 042092           73 SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSS  148 (179)
Q Consensus        73 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~  148 (179)
                      .|+.|++++|.+++ +|. ++.+++|+.|++++|.+. .+|..+..+++|+.+.+++    .+| .++.+++|++|++++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            45667777777763 444 667777777777777776 6666677777766654443    234 566677777777777


Q ss_pred             CccCCch-hhHhhcCCCCCcEEEccCCcccc
Q 042092          149 NNLSSNV-ELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       149 n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      |.+++.. |..+.. +++|+.|++++|++++
T Consensus       518 N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          518 NRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SCCCSSSTTGGGGG-CTTCCEEECTTSGGGG
T ss_pred             CCCCCCCCcHHHhc-CCCCCEEEecCCcCCC
Confidence            7777743 555544 7777777777777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.55  E-value=8.7e-16  Score=118.20  Aligned_cols=39  Identities=23%  Similarity=0.224  Sum_probs=18.6

Q ss_pred             cccEEEcCCCccCCc----hhhHhhcCCCCCcEEEccCCcccc
Q 042092          140 NLTKVSLSSNNLSSN----VELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       140 ~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +|++|++++|.+.+.    ++..+....++|++|++++|.+++
T Consensus       197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            555555555555542    222222212355555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=2.7e-14  Score=98.33  Aligned_cols=112  Identities=28%  Similarity=0.263  Sum_probs=90.9

Q ss_pred             cccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccc
Q 042092           46 ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREK  125 (179)
Q Consensus        46 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~  125 (179)
                      .+.+++|++++|.+++...+..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+.+|..          
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~----------   90 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML----------   90 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH----------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH----------
Confidence            477999999999996335677788999999999999999865  77889999999999999987443332          


Q ss_pred             cccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          126 KLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       126 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                               +..+++|++|++++|.+.+......+..+++|++|++++|++++
T Consensus        91 ---------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           91 ---------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             ---------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             ---------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence                     33457899999999999983322344559999999999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=9.5e-15  Score=121.73  Aligned_cols=149  Identities=17%  Similarity=0.103  Sum_probs=93.7

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccce-----EEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQ-----NLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~-----~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      +.++++++.+|.+.. .+           ..+.....|.     .+++..|.+.  ..+..+..++.|+.|++++|.+. 
T Consensus       173 ~~~~~l~L~~n~~~~-~~-----------~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-  237 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-AN-----------QALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-  237 (727)
T ss_dssp             ---------------------------------------------------------------CCCCCCEEECTTSCCS-
T ss_pred             CccceEEeeCCCCCc-ch-----------hhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-
Confidence            567888888888764 33           2332222222     2333344442  34667889999999999999998 


Q ss_pred             CCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCCchhhHhhcC
Q 042092           87 SIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSSNVELYMFTK  162 (179)
Q Consensus        87 ~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  162 (179)
                      .+|..+..+++|++|++++|.+. .+|..+..+++|+.+.+.+    .+|..++.+++|++|++++|.+.. +|..+.. 
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~-  314 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGN-  314 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC-CCSSTTS-
T ss_pred             CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc-cChhhhc-
Confidence            77877789999999999999999 8899999999999866653    568888999999999999999986 7776554 


Q ss_pred             CCCCcEEEccCCcccc
Q 042092          163 LKSLEVLDLSYNKLSL  178 (179)
Q Consensus       163 l~~L~~L~l~~n~l~~  178 (179)
                      +++|+.|++++|+++|
T Consensus       315 l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CTTCCCEECTTSCCCS
T ss_pred             CCCccEEeCCCCccCC
Confidence            9999999999999986

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=4.4e-14  Score=114.72  Aligned_cols=117  Identities=25%  Similarity=0.330  Sum_probs=68.7

Q ss_pred             ceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc
Q 042092           49 SQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT  128 (179)
Q Consensus        49 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~  128 (179)
                      |+.|++++|.++  ..|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|+.++++
T Consensus       443 L~~L~Ls~n~l~--~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCC--CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            455555555554  1333 555555555555555555 445555555555555555555552 33 45555555443332


Q ss_pred             -----CCc-cccccCCCcccEEEcCCCccCCchhh--HhhcCCCCCcEEEc
Q 042092          129 -----CSI-SSCIFELVNLTKVSLSSNNLSSNVEL--YMFTKLKSLEVLDL  171 (179)
Q Consensus       129 -----~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l  171 (179)
                           +.. |..++.+++|++|++++|.+++.++.  .+...+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence                 222 56677788999999999999884432  23445899999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=9.3e-14  Score=96.07  Aligned_cols=109  Identities=26%  Similarity=0.251  Sum_probs=87.9

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +..+.+++++|.++ .+|           ..+  .+.+++|++++|.++ ...+..|.++++|++|++++|+++...+..
T Consensus         9 C~~~~l~~s~n~l~-~ip-----------~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~   73 (170)
T 3g39_A            9 CSGTTVDCSGKSLA-SVP-----------TGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGV   73 (170)
T ss_dssp             EETTEEECTTSCCS-SCC-----------SCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             cCCCEEEeCCCCcC-ccC-----------ccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhh
Confidence            45688999999998 577           444  378999999999998 566778999999999999999999777777


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCc
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSN  154 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  154 (179)
                      |..+++|++|++++|.+.+..+..+..                   +++|++|++++|.+...
T Consensus        74 f~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           74 FDKLTQLTQLSLNDNQLKSIPRGAFDN-------------------LKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTT-------------------CTTCCEEECCSSCBCTT
T ss_pred             ccCCCCCCEEECCCCccCEeCHHHhcC-------------------CCCCCEEEeCCCCCCCC
Confidence            889999999999999998444444444                   45677888888877653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=2.7e-16  Score=111.32  Aligned_cols=158  Identities=20%  Similarity=0.211  Sum_probs=118.4

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ......++.++++.+.+.+.+|.     +..++..+..+++|++|++++|.+++  .+ .+..+++|++|++++|.++ .
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~-----l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~   84 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPP-----IEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-K   84 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTT-----CCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-S
T ss_pred             HHhcccccCcchheeEeccccCc-----HhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-c
Confidence            34567888889999988877760     00011278899999999999999973  55 7889999999999999998 6


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc----c--ccccCCCcccEEEcCCCccCCchhh----
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI----S--SCIFELVNLTKVSLSSNNLSSNVEL----  157 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~----~--~~~~~~~~L~~L~l~~n~~~~~~~~----  157 (179)
                      +|..+..+++|++|++++|.+.+ +| .+..+++|+.+.+.++.    +  ..+..+++|++|++++|.+.+.+|.    
T Consensus        85 l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  162 (198)
T 1ds9_A           85 IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT  162 (198)
T ss_dssp             CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred             ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence            67777778999999999999984 44 57777778776665421    2  3567788999999999998774432    


Q ss_pred             -----HhhcCCCCCcEEEccCCcccc
Q 042092          158 -----YMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       158 -----~~~~~l~~L~~L~l~~n~l~~  178 (179)
                           ..+..+++|+.||  ++.++.
T Consensus       163 ~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          163 SEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             HHHHHHHHHhCCCcEEEC--CcccCH
Confidence                 2344488999887  666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=9.9e-14  Score=95.93  Aligned_cols=107  Identities=28%  Similarity=0.321  Sum_probs=86.9

Q ss_pred             cceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092           48 HSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL  127 (179)
Q Consensus        48 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l  127 (179)
                      ..+.+++++|.++  .+|..+  .++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+           
T Consensus        10 ~~~~l~~s~n~l~--~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f-----------   74 (170)
T 3g39_A           10 SGTTVDCSGKSLA--SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF-----------   74 (170)
T ss_dssp             ETTEEECTTSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT-----------
T ss_pred             CCCEEEeCCCCcC--ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc-----------
Confidence            3578999999996  355444  3889999999999998888889999999999999999984433333           


Q ss_pred             cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          128 TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       128 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                              ..+++|++|++++|.+++ ++...+..+++|+.|++++|+++.
T Consensus        75 --------~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           75 --------DKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             --------TTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             --------cCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCC
Confidence                    345689999999999998 555445559999999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=1.9e-13  Score=94.87  Aligned_cols=107  Identities=24%  Similarity=0.208  Sum_probs=85.0

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF   92 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   92 (179)
                      .-+.+++++|.++ .+|           ..+.  +.+++|++++|.++ ...+..|.++++|++|++++|.++...+..|
T Consensus        13 ~~~~l~~~~n~l~-~iP-----------~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~   77 (174)
T 2r9u_A           13 DQTLVNCQNIRLA-SVP-----------AGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF   77 (174)
T ss_dssp             CSSEEECCSSCCS-SCC-----------SCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCcEEEeCCCCCC-ccC-----------CCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHh
Confidence            4478999999997 677           4443  78999999999998 5667789999999999999999997666667


Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~  153 (179)
                      ..+++|++|++++|.+.+..+..+..                   +++|++|++++|.+..
T Consensus        78 ~~l~~L~~L~L~~N~l~~l~~~~~~~-------------------l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHLKSIPRGAFDN-------------------LKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTT-------------------CTTCSEEECCSSCBCT
T ss_pred             CCcchhhEEECCCCccceeCHHHhcc-------------------ccCCCEEEeCCCCccc
Confidence            89999999999999998443333444                   4566777777777765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.50  E-value=4.3e-13  Score=106.20  Aligned_cols=119  Identities=17%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccc
Q 042092           47 LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK  126 (179)
Q Consensus        47 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~  126 (179)
                      ++|++|++++|.++ . .+ .+..+++|++|++++|.+++ .|..+   .+|+++++++|.+.+ +| .+..+++|+.+.
T Consensus       131 ~~L~~L~L~~n~l~-~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE-K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCS-S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC-C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            45666666666665 2 33 36666666666666666663 33322   356666666666653 34 355555555544


Q ss_pred             ccCCccccccC-CCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          127 LTCSISSCIFE-LVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       127 l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +.+.....+.. .++|++|++++|.+.. +|.  +..+++|++|++++|.++
T Consensus       202 l~~N~l~~l~~~~~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          202 ADNNSLKKLPDLPLSLESIVAGNNILEE-LPE--LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CCSSCCSSCCCCCTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCcCCCCcCcccEEECcCCcCCc-ccc--cCCCCCCCEEECCCCcCC
Confidence            44322221111 1245555555555543 332  223555555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.50  E-value=3.5e-13  Score=106.74  Aligned_cols=117  Identities=17%  Similarity=0.135  Sum_probs=67.9

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ++|+.|++++|.+++ +|            .+..+++|++|++++|.++  ..+..   ..+|++|++++|.+++ .| .
T Consensus       131 ~~L~~L~L~~n~l~~-lp------------~~~~l~~L~~L~l~~N~l~--~lp~~---~~~L~~L~L~~n~l~~-l~-~  190 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP------------ELQNSSFLKIIDVDNNSLK--KLPDL---PPSLEFIAAGNNQLEE-LP-E  190 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC------------CCTTCTTCCEEECCSSCCS--CCCCC---CTTCCEEECCSSCCSS-CC-C
T ss_pred             CCCCEEECcCCCCCC-Cc------------ccCCCCCCCEEECCCCcCc--ccCCC---cccccEEECcCCcCCc-Cc-c
Confidence            355555666555553 44            4777888888888888876  23332   2477777777777774 34 4


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC----CccccccCCCcccEEEcCCCccCC
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC----SISSCIFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~  153 (179)
                      ++.+++|+++++++|.+.+ +|....   +|+.+.+.+    .+| .++.+++|++|++++|.+.+
T Consensus       191 ~~~l~~L~~L~l~~N~l~~-l~~~~~---~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKK-LPDLPL---SLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCCCCT---TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             ccCCCCCCEEECCCCcCCc-CCCCcC---cccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence            6777777777777777663 343322   233322221    233 24455555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=3.1e-13  Score=93.80  Aligned_cols=106  Identities=25%  Similarity=0.244  Sum_probs=85.7

Q ss_pred             ceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccccc
Q 042092           49 SQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT  128 (179)
Q Consensus        49 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~  128 (179)
                      -+.+++++|.++  .+|..+.  ++|+.|++++|.+++..|..|..+++|++|++++|.+.+..+..             
T Consensus        14 ~~~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~-------------   76 (174)
T 2r9u_A           14 QTLVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV-------------   76 (174)
T ss_dssp             SSEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------------
T ss_pred             CcEEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH-------------
Confidence            368999999996  4555443  89999999999999888888999999999999999988432222             


Q ss_pred             CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          129 CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       129 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                            +..+++|++|++++|.+.+ ++...+..+++|++|++++|+++.
T Consensus        77 ------~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           77 ------FDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ------TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ------hCCcchhhEEECCCCccce-eCHHHhccccCCCEEEeCCCCccc
Confidence                  3445689999999999998 555545559999999999999863

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.49  E-value=1e-14  Score=112.16  Aligned_cols=160  Identities=24%  Similarity=0.197  Sum_probs=114.0

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccc-cceEEEeeCccccCCcccccccCC-----CCccEEEeccCCC
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFIL-HSQNLNLCGNDFNYSKISYGFSQF-----RSLTILNLRHYNF   84 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l-----~~L~~L~l~~~~l   84 (179)
                      .+.|+.|++++|.+++..+.       .+...+..++ +|++|++++|.++ ...+..+..+     ++|++|++++|.+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~-------~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTV-------ELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHH-------HHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             CCCceEEEccCCCCChHHHH-------HHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            45599999999998854320       0002456677 8999999999997 3445445554     9999999999999


Q ss_pred             CCCCCcccc----CC-CCccEEEcCCCccCCCCCCcC----CC-CcccccccccCCc---------cccccCCC-cccEE
Q 042092           85 RGSIPPSFC----NL-TQLMHLDLSSNILSGHIPSSL----SN-LEQLREKKLTCSI---------SSCIFELV-NLTKV  144 (179)
Q Consensus        85 ~~~~~~~l~----~l-~~L~~l~l~~n~l~~~~~~~~----~~-l~~L~~~~l~~~~---------~~~~~~~~-~L~~L  144 (179)
                      ++..+..+.    .+ ++|++|++++|.+.+..+..+    .. .++|+.+++++..         +..+...+ +|++|
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence            866665443    44 899999999999975554433    22 2467776665432         22334555 89999


Q ss_pred             EcCCCccCCchhhHhh---cCC-CCCcEEEccCCcccc
Q 042092          145 SLSSNNLSSNVELYMF---TKL-KSLEVLDLSYNKLSL  178 (179)
Q Consensus       145 ~l~~n~~~~~~~~~~~---~~l-~~L~~L~l~~n~l~~  178 (179)
                      ++++|.+.+..+..+.   ... ++|++|++++|.+++
T Consensus       173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            9999999885554332   335 599999999999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=4.4e-13  Score=108.82  Aligned_cols=134  Identities=24%  Similarity=0.248  Sum_probs=76.2

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      .+++.|++++|.+++ +|           ..+  .++|+.|++++|.++  .+|   ..+++|+.|++++|.+++ +|. 
T Consensus        59 ~~L~~L~Ls~n~L~~-lp-----------~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-  117 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LP-----------DNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLST-LPE-  117 (571)
T ss_dssp             TTCSEEECCSSCCSC-CC-----------SCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred             CCccEEEeCCCCCCc-cC-----------HhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCC-cch-
Confidence            378899999998885 66           333  256777777777775  233   345677777777777764 444 


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcccccc-CCCcccEEEcCCCccCCchhhHhhcCCCCCcEEE
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLD  170 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  170 (179)
                      +..  +|++|++++|.+.+ +|.   .+++|+.+.+.++....+. .+++|++|++++|.+++ +|. +.   ++|+.|+
T Consensus       118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~  186 (571)
T 3cvr_A          118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP---ESLEALD  186 (571)
T ss_dssp             CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEE
T ss_pred             hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh---CCCCEEE
Confidence            443  66666776666663 444   3444444433332111111 23455566666665555 433 21   4555555


Q ss_pred             ccCCccc
Q 042092          171 LSYNKLS  177 (179)
Q Consensus       171 l~~n~l~  177 (179)
                      +++|.|+
T Consensus       187 Ls~N~L~  193 (571)
T 3cvr_A          187 VSTNLLE  193 (571)
T ss_dssp             CCSSCCS
T ss_pred             CcCCCCC
Confidence            5555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.46  E-value=1.3e-12  Score=107.13  Aligned_cols=77  Identities=23%  Similarity=0.222  Sum_probs=49.8

Q ss_pred             CCccEEEcCCCccCCCCCCcCCCCcccccccccCCcccccc-CCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCC
Q 042092           96 TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIF-ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN  174 (179)
Q Consensus        96 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  174 (179)
                      ++|++|++++|.+. .+|.   .+++|+.+.++++....+. .+++|++|++++|.++. +|..+.. +++|+.|++++|
T Consensus       221 ~~L~~L~Ls~N~L~-~lp~---~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~-lp~~l~~-l~~L~~L~L~~N  294 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLPV---LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIH-LSSETTVNLEGN  294 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCS-CCGGGGG-SCTTCEEECCSC
T ss_pred             CCCCEEEccCCccC-cCCC---CCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCc-CCHHHhh-ccccCEEEecCC
Confidence            45666666666665 2342   2344444444432221111 45689999999999986 6766555 999999999999


Q ss_pred             cccc
Q 042092          175 KLSL  178 (179)
Q Consensus       175 ~l~~  178 (179)
                      +++|
T Consensus       295 ~l~~  298 (622)
T 3g06_A          295 PLSE  298 (622)
T ss_dssp             CCCH
T ss_pred             CCCC
Confidence            9875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=6.1e-13  Score=92.26  Aligned_cols=112  Identities=20%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             chhccccceEEEeeCccccCCcccccccCC-CCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISYGFSQF-RSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      .+..+..+++|++++|.++ . .+. +..+ ++|++|++++|.+++.  +.+..+++|+++++++|.+.+. |..     
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~-~~~-----   82 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-V-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI-GEG-----   82 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-S-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE-CSC-----
T ss_pred             hcCCcCCceEEEeeCCCCc-h-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc-Ccc-----
Confidence            5677889999999999997 3 344 4444 4999999999999854  6788899999999999998733 321     


Q ss_pred             ccccccccCCccccccCCCcccEEEcCCCccCCchhh-HhhcCCCCCcEEEccCCcccc
Q 042092          121 QLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVEL-YMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       121 ~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~  178 (179)
                                   .+..+++|++|++++|.+.. ++. ..+..+++|+.|++++|+++.
T Consensus        83 -------------~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           83 -------------LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             -------------HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             -------------hhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC
Confidence                         12456789999999999987 554 234459999999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.43  E-value=3.1e-12  Score=104.85  Aligned_cols=16  Identities=19%  Similarity=0.081  Sum_probs=9.1

Q ss_pred             CceeeecccccCCCCCC
Q 042092           13 AFMNRLLHYSCLSNSFP   29 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~   29 (179)
                      .++.+++++|.++ .+|
T Consensus        41 ~l~~L~ls~n~L~-~lp   56 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLP   56 (622)
T ss_dssp             CCCEEECCSSCCS-CCC
T ss_pred             CCcEEEecCCCcC-ccC
Confidence            3556666666665 444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.43  E-value=2.5e-13  Score=104.06  Aligned_cols=162  Identities=15%  Similarity=0.103  Sum_probs=90.2

Q ss_pred             hhhhcccCceeeecccccCCCCCCcc-----h----------hhhheecccchhccccceEEEeeCccccCCcccccccC
Q 042092            6 SECARNCAFMNRLLHYSCLSNSFPSR-----K----------KLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQ   70 (179)
Q Consensus         6 ~~~~~~~~l~~l~l~~n~~~~~~~~~-----~----------~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~   70 (179)
                      ..+..+++|++|++++|.+.+.++..     .          .++....+..+..+++|++|++++|.+. ...+..+..
T Consensus        48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~  126 (350)
T 4ay9_X           48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH  126 (350)
T ss_dssp             TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCC
T ss_pred             HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcc
Confidence            34677899999999999987655520     0          0000011223444455555555555543 222222333


Q ss_pred             CCCccEEEecc-CCCCCCCCccccCC-CCccEEEcCCCccCCCCCCcCCCCccccccccc-----CCcc-ccccCCCccc
Q 042092           71 FRSLTILNLRH-YNFRGSIPPSFCNL-TQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-----CSIS-SCIFELVNLT  142 (179)
Q Consensus        71 l~~L~~L~l~~-~~l~~~~~~~l~~l-~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~-----~~~~-~~~~~~~~L~  142 (179)
                      ..++..+++.+ +.+....+..|..+ ..++.+++++|.+. .++.......+++...+.     ..+| ..|..+++|+
T Consensus       127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~  205 (350)
T 4ay9_X          127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV  205 (350)
T ss_dssp             BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred             cchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccc
Confidence            34444444433 23332333334444 35778889999887 455544455566654332     2344 4578889999


Q ss_pred             EEEcCCCccCCchhhHhhcCCCCCcEEEccC
Q 042092          143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSY  173 (179)
Q Consensus       143 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  173 (179)
                      +|++++|.++. +|...   +.+|+.|.+.+
T Consensus       206 ~LdLs~N~l~~-lp~~~---~~~L~~L~~l~  232 (350)
T 4ay9_X          206 ILDISRTRIHS-LPSYG---LENLKKLRARS  232 (350)
T ss_dssp             EEECTTSCCCC-CCSSS---CTTCCEEECTT
T ss_pred             hhhcCCCCcCc-cChhh---hccchHhhhcc
Confidence            99999999998 55432   44455555433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.42  E-value=2.9e-15  Score=118.21  Aligned_cols=90  Identities=19%  Similarity=0.215  Sum_probs=42.9

Q ss_pred             hcccCceeeecccccCCC----CCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCC----CccEEEec
Q 042092            9 ARNCAFMNRLLHYSCLSN----SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFR----SLTILNLR   80 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~----~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~----~L~~L~l~   80 (179)
                      ...++|+.|++++|.+++    .++           ..+..+++|++|++++|.+++......+..++    +|++|+++
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~-----------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~   93 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDIS-----------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ   93 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHH-----------HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECT
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHH-----------HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEcc
Confidence            344566666666666552    122           33444555555555555554211111112233    45555555


Q ss_pred             cCCCCC----CCCccccCCCCccEEEcCCCccC
Q 042092           81 HYNFRG----SIPPSFCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        81 ~~~l~~----~~~~~l~~l~~L~~l~l~~n~l~  109 (179)
                      +|.+++    .++..+..+++|++|++++|.+.
T Consensus        94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence            555542    22444455555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=6.7e-15  Score=104.14  Aligned_cols=128  Identities=19%  Similarity=0.126  Sum_probs=101.5

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      .+...++|+.|++++|.+++ +|            .+..+++|++|++++|.++  ..+..+..+++|+.|++++|.+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~------------~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS------------SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC------------CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc------------ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCc
Confidence            45667899999999999985 55            6888999999999999997  456667778999999999999985


Q ss_pred             CCCccccCCCCccEEEcCCCccCCCCC-CcCCCCcccccccccCC-----ccc----------cccCCCcccEEEcCCCc
Q 042092           87 SIPPSFCNLTQLMHLDLSSNILSGHIP-SSLSNLEQLREKKLTCS-----ISS----------CIFELVNLTKVSLSSNN  150 (179)
Q Consensus        87 ~~~~~l~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~~~l~~~-----~~~----------~~~~~~~L~~L~l~~n~  150 (179)
                       .| .+..+++|+++++++|.+.+..+ ..+..+++|+.+.+.++     .|.          .+..+++|++||  ++.
T Consensus       108 -l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~  183 (198)
T 1ds9_A          108 -LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP  183 (198)
T ss_dssp             -HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred             -CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence             44 67888999999999999984322 46778888888666643     222          267789999987  777


Q ss_pred             cCC
Q 042092          151 LSS  153 (179)
Q Consensus       151 ~~~  153 (179)
                      +..
T Consensus       184 i~~  186 (198)
T 1ds9_A          184 VDV  186 (198)
T ss_dssp             GTT
T ss_pred             cCH
Confidence            765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.41  E-value=3.6e-15  Score=117.66  Aligned_cols=156  Identities=17%  Similarity=0.121  Sum_probs=81.6

Q ss_pred             ccCceeeecccccCCCC----CCcchhhhheecccchhccccceEEEeeCccccCCcc----cccccCCCCccEEEeccC
Q 042092           11 NCAFMNRLLHYSCLSNS----FPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKI----SYGFSQFRSLTILNLRHY   82 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~l~~~   82 (179)
                      .+.|+.|++++|.+++.    ++           ..+..+++|++|++++|.+++...    +..+..+++|+.|++++|
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~-----------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLC-----------GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHH-----------HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCCceEEEccCCCCcHHHHHHHH-----------HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            45777788887777642    33           445556666666666666542111    111224556666666666


Q ss_pred             CCCCC----CCccccCCCCccEEEcCCCccCC-----------------------------C----CCCcCCCCcccccc
Q 042092           83 NFRGS----IPPSFCNLTQLMHLDLSSNILSG-----------------------------H----IPSSLSNLEQLREK  125 (179)
Q Consensus        83 ~l~~~----~~~~l~~l~~L~~l~l~~n~l~~-----------------------------~----~~~~~~~l~~L~~~  125 (179)
                      .++..    ++..+..+++|+++++++|.+.+                             .    ++..+..+++|+.+
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred             CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence            55532    23334445555555555555432                             1    12223333445444


Q ss_pred             cccCCc-----cccccC-----CCcccEEEcCCCccCC----chhhHhhcCCCCCcEEEccCCcccc
Q 042092          126 KLTCSI-----SSCIFE-----LVNLTKVSLSSNNLSS----NVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       126 ~l~~~~-----~~~~~~-----~~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      ++++..     +..+..     .+.|++|++++|.+++    .++..+.. +++|++|++++|++++
T Consensus       347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGD  412 (461)
T ss_dssp             ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCH
T ss_pred             EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCH
Confidence            444321     111111     4567777777777664    34444444 6777777777777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.40  E-value=5.6e-15  Score=114.27  Aligned_cols=157  Identities=16%  Similarity=0.129  Sum_probs=105.0

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhcc-----ccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFI-----LHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      .+.++.|++++|.++....           ..+...     +.|++|++++|.+++.........+++|+.|++++|.++
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~-----------~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~  139 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKC-----------TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG  139 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHH-----------HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred             HhhCCEEEecCCCCCHHHH-----------HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence            3678889999988874322           233332     688899999998863223333345678889999999887


Q ss_pred             CCCCccc-----cCCCCccEEEcCCCccCCC----CCCcCCCCcccccccccCCc---------cccccCCCcccEEEcC
Q 042092           86 GSIPPSF-----CNLTQLMHLDLSSNILSGH----IPSSLSNLEQLREKKLTCSI---------SSCIFELVNLTKVSLS  147 (179)
Q Consensus        86 ~~~~~~l-----~~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~~~l~~~~---------~~~~~~~~~L~~L~l~  147 (179)
                      +.....+     ...++|++|++++|.+...    ++..+...++|+.+++.++.         ...+...+.|++|+++
T Consensus       140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls  219 (372)
T 3un9_A          140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA  219 (372)
T ss_dssp             HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred             HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence            4433333     2357789999999887532    23344556677776666432         3345567789999999


Q ss_pred             CCccCCchhhHhh---cCCCCCcEEEccCCcccc
Q 042092          148 SNNLSSNVELYMF---TKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       148 ~n~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~  178 (179)
                      +|.+.+.....+.   ...++|++|++++|.|+.
T Consensus       220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          220 YNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            9999874333322   236889999999999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=3.2e-12  Score=97.56  Aligned_cols=105  Identities=20%  Similarity=0.152  Sum_probs=84.3

Q ss_pred             eeeecccc-cCCCCCCcchhhhheecccchhccccceEEEeeC-ccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092           15 MNRLLHYS-CLSNSFPSRKKLLIFALNESLFFILHSQNLNLCG-NDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF   92 (179)
Q Consensus        15 ~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   92 (179)
                      ..++.+++ .++ .+|           . +..+.+|++|+|++ |.++ ...+..|.++++|+.|++++|.+++..|..|
T Consensus        11 ~~v~~~~~n~l~-~ip-----------~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~   76 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLH-----------H-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAF   76 (347)
T ss_dssp             SCEECCSSCCCT-TTT-----------T-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGG
T ss_pred             CEEEcCCCCCCC-ccC-----------C-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHh
Confidence            45788887 787 688           7 88899999999996 9997 4666789999999999999999998888889


Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~  153 (179)
                      ..+++|++|++++|.+.+..+..+..+                    .|+.|++.+|.+..
T Consensus        77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~--------------------~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           77 HFTPRLSRLNLSFNALESLSWKTVQGL--------------------SLQELVLSGNPLHC  117 (347)
T ss_dssp             GSCSCCCEEECCSSCCSCCCSTTTCSC--------------------CCCEEECCSSCCCC
T ss_pred             cCCcCCCEEeCCCCccceeCHHHcccC--------------------CceEEEeeCCCccC
Confidence            999999999999999984433333322                    26677777777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=6.9e-12  Score=95.66  Aligned_cols=104  Identities=21%  Similarity=0.209  Sum_probs=84.9

Q ss_pred             eEEEeeCc-cccCCcccccccCCCCccEEEecc-CCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092           50 QNLNLCGN-DFNYSKISYGFSQFRSLTILNLRH-YNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL  127 (179)
Q Consensus        50 ~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l  127 (179)
                      ..++++++ .++  .+|. +..+++|+.|++++ |.++...+..|..+++|++|++++|.+.+..|..|           
T Consensus        11 ~~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-----------   76 (347)
T 2ifg_A           11 SGLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF-----------   76 (347)
T ss_dssp             SCEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG-----------
T ss_pred             CEEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh-----------
Confidence            35688888 786  4666 89999999999996 99997777789999999999999999885555444           


Q ss_pred             cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          128 TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       128 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                              ..+++|++|+|++|.+.+ +|...+..++ |+.|++++|++.
T Consensus        77 --------~~l~~L~~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           77 --------HFTPRLSRLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             --------GSCSCCCEEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred             --------cCCcCCCEEeCCCCccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence                    445689999999999998 6655666455 999999999986

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=1.1e-11  Score=94.11  Aligned_cols=81  Identities=16%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             CCCccEEEcCCCccCCCCCCcCCCCcccccccccCC----ccccccCCCccc-EEEcCCCccCCchhhHhhcCCCCCcEE
Q 042092           95 LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLT-KVSLSSNNLSSNVELYMFTKLKSLEVL  169 (179)
Q Consensus        95 l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~l~~L~~L  169 (179)
                      +++|+.+++.+|.+.......|..+.+|+.+.+...    ....|..+.+|+ .+++.. .++. ++...+..+++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEE
Confidence            456777777777776444556777777776555432    233566677777 777776 5555 444445557777777


Q ss_pred             EccCCccc
Q 042092          170 DLSYNKLS  177 (179)
Q Consensus       170 ~l~~n~l~  177 (179)
                      +++.|.++
T Consensus       303 ~l~~n~i~  310 (329)
T 3sb4_A          303 LATGDKIT  310 (329)
T ss_dssp             EECSSCCC
T ss_pred             EeCCCccC
Confidence            77666553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=3.9e-11  Score=91.00  Aligned_cols=99  Identities=16%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             CCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccc-cccccC----CccccccCCCcccEEE
Q 042092           71 FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLR-EKKLTC----SISSCIFELVNLTKVS  145 (179)
Q Consensus        71 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~-~~~l~~----~~~~~~~~~~~L~~L~  145 (179)
                      +++|+.+++++|.++.+.+..|..+.+|+.+++..| +.......|..+.+|+ ...+..    ..+..|..+++|+.++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEE
Confidence            789999999999999777778999999999999998 7656677899999998 766654    3356788999999999


Q ss_pred             cCCCccCCchhhHhhcCCCCCcEEEc
Q 042092          146 LSSNNLSSNVELYMFTKLKSLEVLDL  171 (179)
Q Consensus       146 l~~n~~~~~~~~~~~~~l~~L~~L~l  171 (179)
                      ++.|.+.. ++...+..+++|+.+..
T Consensus       304 l~~n~i~~-I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKITT-LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred             eCCCccCc-cchhhhcCCcchhhhcc
Confidence            99999998 66656667999998763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.21  E-value=5e-12  Score=102.57  Aligned_cols=57  Identities=19%  Similarity=0.133  Sum_probs=31.5

Q ss_pred             CCCCccccccccc----CCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEcc
Q 042092          116 LSNLEQLREKKLT----CSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLS  172 (179)
Q Consensus       116 ~~~l~~L~~~~l~----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  172 (179)
                      +..+++|+.+.+.    ..++..+..+++|++|++++|.+.+.....+...+++|+.|+++
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            3344444444332    23344455667777777777776553333334446666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.13  E-value=1e-11  Score=100.73  Aligned_cols=87  Identities=16%  Similarity=0.109  Sum_probs=46.2

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccchh-ccccceEEEeeCc-cccCCcccccccCCCCccEEEeccCCCCCC
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLF-FILHSQNLNLCGN-DFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ..++|+.|++++|.+++..+           ..+. .+++|++|++++| .++....+..+..+++|++|++++|.+++.
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~-----------~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~  171 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCL-----------ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV  171 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHH-----------HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred             hCCCCCeEEeeCcEEcHHHH-----------HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence            34567777777776664333           2333 4566666666666 333111333334566666666666665543


Q ss_pred             CCcccc----CCCCccEEEcCCCc
Q 042092           88 IPPSFC----NLTQLMHLDLSSNI  107 (179)
Q Consensus        88 ~~~~l~----~l~~L~~l~l~~n~  107 (179)
                      .+..+.    .+++|++|++++|.
T Consensus       172 ~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          172 SGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             CGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             chHHHHHHhhcCCcCcEEEecccC
Confidence            333222    34456666665554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.02  E-value=3.2e-10  Score=91.96  Aligned_cols=86  Identities=12%  Similarity=0.067  Sum_probs=41.1

Q ss_pred             cCCCCccEEEcCCCccCCCCC-CcCCCCcccccccccCC-----ccccccCCCcccEEEcC-----------CCccCCch
Q 042092           93 CNLTQLMHLDLSSNILSGHIP-SSLSNLEQLREKKLTCS-----ISSCIFELVNLTKVSLS-----------SNNLSSNV  155 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~~~l~~~-----~~~~~~~~~~L~~L~l~-----------~n~~~~~~  155 (179)
                      ..+++|++|++++|.+.+... ..+..+++|+.+.+...     ++.....+++|++|+++           .+.+++..
T Consensus       290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~  369 (592)
T 3ogk_B          290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG  369 (592)
T ss_dssp             GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred             hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence            344455555555555432211 22344444544443311     11122345666777776           24554433


Q ss_pred             hhHhhcCCCCCcEEEccCCcccc
Q 042092          156 ELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      ...+...+++|+.|+++.|.+++
T Consensus       370 ~~~l~~~~~~L~~L~l~~~~l~~  392 (592)
T 3ogk_B          370 LIALAQGCQELEYMAVYVSDITN  392 (592)
T ss_dssp             HHHHHHHCTTCSEEEEEESCCCH
T ss_pred             HHHHHhhCccCeEEEeecCCccH
Confidence            33334446677777776666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.99  E-value=1.8e-11  Score=94.55  Aligned_cols=152  Identities=19%  Similarity=0.141  Sum_probs=102.1

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccch-hccccceEEEeeCccccCCcccccc-----cCCCCccEEEeccCCCC
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESL-FFILHSQNLNLCGNDFNYSKISYGF-----SQFRSLTILNLRHYNFR   85 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~-----~~l~~L~~L~l~~~~l~   85 (179)
                      +.|+.|++++|.++....           ..+ ..+.+|++|++++|.+++ .....+     ...++|+.|++++|.++
T Consensus       101 ~~L~~L~Ls~n~l~~~~~-----------~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~~~L~~~~~~L~~L~Ls~n~l~  168 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGL-----------RTLLPVFLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSNNPLT  168 (372)
T ss_dssp             SCEEEEECTTCCCCHHHH-----------HHTHHHHHTEEEEECCSSCCCH-HHHHHHHHHHHSTTCCCCEEECCSSCCH
T ss_pred             CCceEEEecCCCCCHHHH-----------HHHHHHHHhccHhhcCCCCCCH-HHHHHHHHHHHhcCCccceeeCCCCCCC
Confidence            689999999999874322           222 346789999999999863 222222     35688999999999987


Q ss_pred             CC----CCccccCCCCccEEEcCCCccCCC----CCCcCCCCcccccccccCCc---------cccccCCCcccEEEcCC
Q 042092           86 GS----IPPSFCNLTQLMHLDLSSNILSGH----IPSSLSNLEQLREKKLTCSI---------SSCIFELVNLTKVSLSS  148 (179)
Q Consensus        86 ~~----~~~~l~~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~~~l~~~~---------~~~~~~~~~L~~L~l~~  148 (179)
                      +.    ++..+...++|++|++++|.+.+.    ++..+...++|+.+++.++.         ...+...+.|++|++++
T Consensus       169 ~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          169 AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF  248 (372)
T ss_dssp             HHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred             hHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence            42    333446788999999999998642    24455666678777666532         22344568999999999


Q ss_pred             CccCCchhhHhhcCCCC-----CcEEE--ccCCcc
Q 042092          149 NNLSSNVELYMFTKLKS-----LEVLD--LSYNKL  176 (179)
Q Consensus       149 n~~~~~~~~~~~~~l~~-----L~~L~--l~~n~l  176 (179)
                      |.+.+.....+.. +..     ++.+.  +..+.+
T Consensus       249 N~i~~~g~~~L~~-~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          249 NELSSEGRQVLRD-LGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             SSCCHHHHHHHHH-CC------CEEECCCC----C
T ss_pred             CCCCHHHHHHHHH-HhcCCCccchhhHhhhcCCcc
Confidence            9998855554443 321     55665  555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.90  E-value=8.8e-11  Score=95.25  Aligned_cols=84  Identities=15%  Similarity=0.159  Sum_probs=43.0

Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCC-CcccccccccCCc-----cccc-cCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSN-LEQLREKKLTCSI-----SSCI-FELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~-l~~L~~~~l~~~~-----~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      ..+++|+.|++++ .+.+..+..+.. +++|+.+.+....     ...+ ..+++|++|++++|.+++.....+...+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3455666666654 333222222222 4445544443211     1112 346677777777777754333334444677


Q ss_pred             CcEEEccCCccc
Q 042092          166 LEVLDLSYNKLS  177 (179)
Q Consensus       166 L~~L~l~~n~l~  177 (179)
                      |+.|++++|+++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            777777777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.75  E-value=3.4e-08  Score=76.94  Aligned_cols=101  Identities=11%  Similarity=0.149  Sum_probs=54.6

Q ss_pred             CCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccC-----CCCCCcCCCCcccccccccCC----ccccccCCCccc
Q 042092           72 RSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS-----GHIPSSLSNLEQLREKKLTCS----ISSCIFELVNLT  142 (179)
Q Consensus        72 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~-----~~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~~L~  142 (179)
                      .+|+.+.+. +.+..+....|..+++|+.+++.++.+.     ......|..+++|+...+...    -...|..+.+|+
T Consensus       248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCC
T ss_pred             CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCcc
Confidence            344444442 2233344455666666777766665443     233455666666666544422    233456667777


Q ss_pred             EEEcCCCccCCchhhHhhcCCCCCcEEEccCCcc
Q 042092          143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL  176 (179)
Q Consensus       143 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  176 (179)
                      .+.+..+ +.. +....+..+ +|+.+++++|.+
T Consensus       327 ~l~lp~~-l~~-I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          327 QLTIPAN-VTQ-INFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             EEEECTT-CCE-ECTTSSSSS-CCCEEEECCSSC
T ss_pred             EEEECcc-ccE-EcHHhCCCC-CCCEEEEcCCCC
Confidence            7777544 444 444444446 777777777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=3.1e-08  Score=76.19  Aligned_cols=163  Identities=16%  Similarity=0.127  Sum_probs=97.3

Q ss_pred             hcccCceeeecccccCCC-CCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSN-SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ..+++|+.|.+....... .+. |.  ....+...+..++.|+.|.+++|.-  ...+. + .+++|+.|++..+.+...
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is-~~--~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~-~-~~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEIS-WI--EQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK-K-PRPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGG-GC--BCCBCHHHHHTCTTCCEEEEECCBT--CBCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred             hhcchhhheeecCcchhhcccc-cc--cccCHHHHHhcCCCCcEEEEeCCCC--ceecc-c-cCCCCcEEEEecCCCChH
Confidence            346788888886543210 000 00  0001114556778999999998831  12232 3 378999999998887633


Q ss_pred             CCcccc--CCCCccEEEcCC--CccCCC-----CCCcC--CCCcccccccccCC-----ccccc---cCCCcccEEEcCC
Q 042092           88 IPPSFC--NLTQLMHLDLSS--NILSGH-----IPSSL--SNLEQLREKKLTCS-----ISSCI---FELVNLTKVSLSS  148 (179)
Q Consensus        88 ~~~~l~--~l~~L~~l~l~~--n~l~~~-----~~~~~--~~l~~L~~~~l~~~-----~~~~~---~~~~~L~~L~l~~  148 (179)
                      ....+.  .+++|+.|+++.  +...+.     +...+  ..+++|+.+.+...     .+..+   ..++.|++|+++.
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            223333  689999998853  221111     11112  23567777666431     12222   2468999999999


Q ss_pred             CccCCchhhHhh---cCCCCCcEEEccCCcccc
Q 042092          149 NNLSSNVELYMF---TKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       149 n~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~  178 (179)
                      |.+.+.....+.   .++++|+.|+++.|.++.
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            999875444433   347899999999998864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.66  E-value=1.6e-09  Score=75.68  Aligned_cols=121  Identities=13%  Similarity=0.123  Sum_probs=75.7

Q ss_pred             chhccccceEEEeeCc-cccCCc---ccccccCCCCccEEEeccCCCCCC----CCccccCCCCccEEEcCCCccCCCCC
Q 042092           42 SLFFILHSQNLNLCGN-DFNYSK---ISYGFSQFRSLTILNLRHYNFRGS----IPPSFCNLTQLMHLDLSSNILSGHIP  113 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n-~i~~~~---~~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~l~l~~n~l~~~~~  113 (179)
                      .+...+.|++|++++| .++...   ....+...++|++|++++|.+.+.    +...+...++|++|++++|.+.+...
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4555677888888888 775211   233455667888888888887642    22334445778888888888763211


Q ss_pred             CcCCCCcccccccccCCccccccCCCcccEEEc--CCCccCCchhhHh---hcCCCCCcEEEccCCccc
Q 042092          114 SSLSNLEQLREKKLTCSISSCIFELVNLTKVSL--SSNNLSSNVELYM---FTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       114 ~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l--~~n~~~~~~~~~~---~~~l~~L~~L~l~~n~l~  177 (179)
                      .               .+...+...+.|++|++  ++|.+.+.....+   ....++|++|++++|.+.
T Consensus       111 ~---------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 L---------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             H---------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             H---------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            1               11223334457888888  7788876433222   223577888888888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.56  E-value=7.4e-09  Score=76.32  Aligned_cols=68  Identities=24%  Similarity=0.206  Sum_probs=49.2

Q ss_pred             hccccceEEEeeCccccCC-cccccccCCCCccEEEeccCCCCCCCCccccCCC--CccEEEcCCCccCCCCC
Q 042092           44 FFILHSQNLNLCGNDFNYS-KISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLT--QLMHLDLSSNILSGHIP  113 (179)
Q Consensus        44 ~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~--~L~~l~l~~n~l~~~~~  113 (179)
                      ..++.|+.|++++|.+++- ..+..+..+++|+.|++++|.+++.  ..+..+.  +|++|++.+|.+.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            5578899999999998721 2234556889999999999998854  2333333  89999999998875444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=2.9e-09  Score=74.34  Aligned_cols=123  Identities=15%  Similarity=0.112  Sum_probs=86.0

Q ss_pred             hcccCceeeecccc-cCCCCCCcchhhhheecccchhccccceEEEeeCccccCCc---ccccccCCCCccEEEeccCCC
Q 042092            9 ARNCAFMNRLLHYS-CLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSK---ISYGFSQFRSLTILNLRHYNF   84 (179)
Q Consensus         9 ~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~l~~~~l   84 (179)
                      ...+.|++|++++| .+.....       ..+...+...+.|++|++++|.+++..   ....+...++|++|++++|.+
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~-------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTL-------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHH-------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCCEEEecCCCCCCHHHH-------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            45788999999999 8874211       000145566789999999999986322   234455668999999999998


Q ss_pred             CCC----CCccccCCCCccEEEc--CCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092           85 RGS----IPPSFCNLTQLMHLDL--SSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        85 ~~~----~~~~l~~l~~L~~l~l--~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~  153 (179)
                      ++.    +...+...++|++|++  ++|.+.......               +...+...+.|++|++++|.+..
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~---------------l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME---------------IANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH---------------HHHHHHHCSSCCEEECCCSSHHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH---------------HHHHHHhCCCcCEEeccCCCCCh
Confidence            853    3455667789999999  888886332111               12233445689999999998864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.50  E-value=7.1e-07  Score=69.54  Aligned_cols=129  Identities=9%  Similarity=0.061  Sum_probs=93.1

Q ss_pred             chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC-----CCCCccccCCCCccEEEcCCCccCCCCCCcC
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR-----GSIPPSFCNLTQLMHLDLSSNILSGHIPSSL  116 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~-----~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~  116 (179)
                      +|.. ..|+.+.+..+ ++ .....+|.++++|+.+.+.++.+.     .+.+..|..+++|+.+++.. .+.......|
T Consensus       244 aF~~-~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF  319 (401)
T 4fdw_A          244 AFRE-SGITTVKLPNG-VT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL  319 (401)
T ss_dssp             TTTT-CCCSEEEEETT-CC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred             cccc-CCccEEEeCCC-cc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence            4444 56777777544 43 355778999999999999888654     35566788999999999984 4664556788


Q ss_pred             CCCcccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCC-CCcEEEccCCcc
Q 042092          117 SNLEQLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK-SLEVLDLSYNKL  176 (179)
Q Consensus       117 ~~l~~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l  176 (179)
                      ..+.+|+.+.+...    -...|..+ +|+.+++.+|.+.. ++...+..++ +++.+.+..+.+
T Consensus       320 ~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          320 GGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcc-cccccccCCCCCccEEEeCHHHH
Confidence            88888888666543    34567788 99999999998877 3333344454 678888776543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.45  E-value=2.3e-07  Score=71.38  Aligned_cols=161  Identities=17%  Similarity=0.109  Sum_probs=98.7

Q ss_pred             ccCceeeecccccCCC-CCCcchhhhheecccchhccccceEEEeeCcccc-----C---CcccccccCCCCccEEEecc
Q 042092           11 NCAFMNRLLHYSCLSN-SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFN-----Y---SKISYGFSQFRSLTILNLRH   81 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~-----~---~~~~~~~~~l~~L~~L~l~~   81 (179)
                      .+.++.|.+......+ ..    ......+..+...+++|+.|.+......     +   ......+..+++|+.|.+++
T Consensus       106 ~~~v~~L~lg~~~~~~~~~----~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g  181 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDC----SDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG  181 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCS----HHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred             chhcceEEEcccccCCCcH----HHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence            4456777776554331 11    0011112234567889999998765321     0   12334456789999999988


Q ss_pred             CCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCC--CCccccccccc-------CC--c---cccc--cCCCcccEEE
Q 042092           82 YNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLS--NLEQLREKKLT-------CS--I---SSCI--FELVNLTKVS  145 (179)
Q Consensus        82 ~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~--~l~~L~~~~l~-------~~--~---~~~~--~~~~~L~~L~  145 (179)
                      +.-. .++. + .+++|++|++..+.+.......+.  .+++|+.+.+.       +.  +   ...+  ..+++|++|+
T Consensus       182 ~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~  258 (362)
T 2ra8_A          182 TNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG  258 (362)
T ss_dssp             CBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEE
T ss_pred             CCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEe
Confidence            7311 2333 3 378999999998887533222222  46667765542       11  0   1122  2478999999


Q ss_pred             cCCCccCCchhhHhhc--CCCCCcEEEccCCcccc
Q 042092          146 LSSNNLSSNVELYMFT--KLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       146 l~~n~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~  178 (179)
                      +.+|.+.+..+..+..  .+++|++|+++.|.+++
T Consensus       259 L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             EESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            9999987654444442  47899999999998864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.39  E-value=2.1e-07  Score=68.49  Aligned_cols=82  Identities=16%  Similarity=0.118  Sum_probs=62.0

Q ss_pred             hcccCceeeecccccCCC--CCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSN--SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      ...+.|+.|+|++|.+++  .++           ..+..+++|+.|+|++|.+.+...-..+..+ +|+.|++++|.+.+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~-----------~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMS-----------SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGT-----------THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccch-----------hHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            346899999999999996  445           5677899999999999999732112223334 99999999999886


Q ss_pred             CCCc-------cccCCCCccEEE
Q 042092           87 SIPP-------SFCNLTQLMHLD  102 (179)
Q Consensus        87 ~~~~-------~l~~l~~L~~l~  102 (179)
                      ..|.       .+..+++|+.||
T Consensus       235 ~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          235 TFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCcchhHHHHHHHHCcccCeEC
Confidence            5542       255688998886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.33  E-value=9.7e-08  Score=65.90  Aligned_cols=34  Identities=15%  Similarity=0.044  Sum_probs=15.6

Q ss_pred             CccEEEeccCC-CCCCCCccccCCCCccEEEcCCC
Q 042092           73 SLTILNLRHYN-FRGSIPPSFCNLTQLMHLDLSSN  106 (179)
Q Consensus        73 ~L~~L~l~~~~-l~~~~~~~l~~l~~L~~l~l~~n  106 (179)
                      +|+.|++++|. +++.--..+..+++|++|+++++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            45555555543 44322223344455555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=7.1e-07  Score=61.56  Aligned_cols=103  Identities=13%  Similarity=0.112  Sum_probs=62.8

Q ss_pred             cccceEEEeeCccccCCcccccccCCCCccEEEeccCC-CCCCCCccccCC----CCccEEEcCCCc-cCCCCCCcCCCC
Q 042092           46 ILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYN-FRGSIPPSFCNL----TQLMHLDLSSNI-LSGHIPSSLSNL  119 (179)
Q Consensus        46 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~l~l~~n~-l~~~~~~~~~~l  119 (179)
                      -..|++|++++|.+++.... .+.++++|+.|++++|. +++.--..++.+    ++|++|++++|. +++.-       
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-------  131 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-------  131 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-------
T ss_pred             CceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-------
Confidence            35688888888888743333 35788888888888885 554333334443    368888888774 44221       


Q ss_pred             cccccccccCCccccccCCCcccEEEcCCCc-cCCch--hhHhhcCCCCCcE
Q 042092          120 EQLREKKLTCSISSCIFELVNLTKVSLSSNN-LSSNV--ELYMFTKLKSLEV  168 (179)
Q Consensus       120 ~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~--~~~~~~~l~~L~~  168 (179)
                                  ...+..+++|++|+++++. +++..  ...+.+.+|+++.
T Consensus       132 ------------l~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          132 ------------IIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             ------------HHHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             ------------HHHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence                        1123346788888888885 55421  2233455777653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.58  E-value=0.00024  Score=54.89  Aligned_cols=127  Identities=11%  Similarity=0.086  Sum_probs=74.8

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      .+|..+..|+.+.+..+...  ....+|.+++.|+.+.+.. .+..+....|..+.+|+.+++..+ +.......|..+.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ceeeecccccEEecccccce--ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            45667777888877766442  4456677788888887753 344455566777888888888654 4433355677777


Q ss_pred             ccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCc
Q 042092          121 QLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNK  175 (179)
Q Consensus       121 ~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  175 (179)
                      +|+...+...    -...|..+.+|+.+++.++....   ..+. ...+|+.+.+..+.
T Consensus       335 ~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~-~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          335 QLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW---NAIS-TDSGLQNLPVAPGS  389 (394)
T ss_dssp             TCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCB-CCCCC---------
T ss_pred             CCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh---hhhh-ccCCCCEEEeCCCC
Confidence            7777555432    23456777888888887765421   2223 36667777766554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.54  E-value=0.0008  Score=51.89  Aligned_cols=125  Identities=10%  Similarity=0.082  Sum_probs=72.2

Q ss_pred             chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcc
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ  121 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~  121 (179)
                      .+..+..++.+.+..+...  .....|..+..++........+.   ...|..+.+|+.+.+..+ +.......|..+.+
T Consensus       248 ~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~  321 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS  321 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred             cccccccceeEEcCCCcce--eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCC
Confidence            4555666666666655432  33445556666666555444322   234556667777776554 33233455666677


Q ss_pred             cccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCC
Q 042092          122 LREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN  174 (179)
Q Consensus       122 L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  174 (179)
                      |+...+...    -...|..+.+|+.+++..+ +.. ++...+..+.+|+.+++..+
T Consensus       322 L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          322 LVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTTCCEEEEEGG
T ss_pred             CCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCCCCEEEECCC
Confidence            766555432    2345667778888887665 554 44445555778888777554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.42  E-value=0.00044  Score=53.37  Aligned_cols=107  Identities=15%  Similarity=0.173  Sum_probs=72.6

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+.++..|+.+.+... ++ .....+|.++.+|+.+.+..+ ++.+....|..+.+|+.+.+..+ +.......|..+.
T Consensus       282 ~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          282 GAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             cccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            57888999999999754 43 355678999999999999765 55566678889999999999765 5534457788889


Q ss_pred             ccccccccCCcc--ccccCCCcccEEEcCCCcc
Q 042092          121 QLREKKLTCSIS--SCIFELVNLTKVSLSSNNL  151 (179)
Q Consensus       121 ~L~~~~l~~~~~--~~~~~~~~L~~L~l~~n~~  151 (179)
                      +|+...+.+...  ..+..+..|+.+.+..+.+
T Consensus       358 ~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          358 ALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred             CCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence            998877766432  2455667788877665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.29  E-value=0.0017  Score=50.02  Aligned_cols=120  Identities=17%  Similarity=0.106  Sum_probs=84.5

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+..+..++.+......+.    ...|..+.+|+.+.+..+ +..+....|..+.+|+.+++..+ +.......|..+.
T Consensus       270 ~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~  343 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT  343 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred             cccccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence            56777888888888776553    345778899999998765 55466677888999999998754 5534467788888


Q ss_pred             ccccccccCC----ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEE
Q 042092          121 QLREKKLTCS----ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVL  169 (179)
Q Consensus       121 ~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  169 (179)
                      +|+...+...    -...|..+.+|+.+++..+ +.. +... +..+.+|+.+
T Consensus       344 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~-F~~c~~L~~I  393 (394)
T 4fs7_A          344 SLSNINFPLSLRKIGANAFQGCINLKKVELPKR-LEQ-YRYD-FEDTTKFKWI  393 (394)
T ss_dssp             TCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG-GGG-GGGG-BCTTCEEEEE
T ss_pred             CCCEEEECccccEehHHHhhCCCCCCEEEECCC-CEE-hhhe-ecCCCCCcEE
Confidence            8888666543    2346788999999998754 332 3333 4447777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.26  E-value=0.0014  Score=50.13  Aligned_cols=106  Identities=11%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+..+..|+.+.+..+ ++ .....+|.++.+|+.+.+..+ +..+....|..+.+|+.+.+.++.+.......|..+.
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            45566677777777665 32 234455667777777776543 3334445566777777777776666544455666666


Q ss_pred             ccccccccCC----ccccccCCCcccEEEcCCC
Q 042092          121 QLREKKLTCS----ISSCIFELVNLTKVSLSSN  149 (179)
Q Consensus       121 ~L~~~~l~~~----~~~~~~~~~~L~~L~l~~n  149 (179)
                      +|+...+...    -...|..+.+|+.+.+..+
T Consensus       311 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          311 KLSSVTLPTALKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TCCEEECCTTCCEECTTTTTTCTTCCCCCCCTT
T ss_pred             CCCEEEcCccccEEHHHHhhCCCCCCEEEECCc
Confidence            6666555432    2234566667777666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.14  E-value=4.2e-05  Score=53.66  Aligned_cols=117  Identities=12%  Similarity=0.126  Sum_probs=61.6

Q ss_pred             ccccceEEEeeCc-cccCC---cccccccCCCCccEEEeccCCCCCCCC----ccccCCCCccEEEcCCCccCCCCCCcC
Q 042092           45 FILHSQNLNLCGN-DFNYS---KISYGFSQFRSLTILNLRHYNFRGSIP----PSFCNLTQLMHLDLSSNILSGHIPSSL  116 (179)
Q Consensus        45 ~l~~L~~L~l~~n-~i~~~---~~~~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~l~l~~n~l~~~~~~~~  116 (179)
                      .-+.|++|+++++ .|.+.   .....+..-+.|+.|++++|.+.+...    +.+..-.+|++|++++|.|.+..... 
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a-  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR-  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH-
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH-
Confidence            3466777777764 55321   123344556677777777777764322    23334467788888888776321111 


Q ss_pred             CCCcccccccccCCccccccCCCcccEEEcCCC---ccCCchhhH---hhcCCCCCcEEEccCCcc
Q 042092          117 SNLEQLREKKLTCSISSCIFELVNLTKVSLSSN---NLSSNVELY---MFTKLKSLEVLDLSYNKL  176 (179)
Q Consensus       117 ~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n---~~~~~~~~~---~~~~l~~L~~L~l~~n~l  176 (179)
                                    +.+.+..-..|++|++++|   .+.......   ..+.-+.|+.|+++.|.+
T Consensus       118 --------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 --------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             --------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             --------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                          1111222345777777654   333321111   122355677777776643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.12  E-value=0.0014  Score=42.75  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             cccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          140 NLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       140 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +|++|+|++|.|+. ++...+..+++|+.|++++|++.
T Consensus        32 ~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCee
Confidence            68889999999988 66666666888999999988763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.01  E-value=0.0034  Score=47.93  Aligned_cols=86  Identities=15%  Similarity=0.069  Sum_probs=67.0

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+..+..++.+.+..+ +. .....+|.++.+|+.+.+..+.+..+....|.++.+|+.+++..+ ++..-...|..+.
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  333 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK  333 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence            56778899999999765 33 345677899999999999988887666778999999999999765 5434456788888


Q ss_pred             ccccccccC
Q 042092          121 QLREKKLTC  129 (179)
Q Consensus       121 ~L~~~~l~~  129 (179)
                      +|+...+..
T Consensus       334 ~L~~i~ip~  342 (379)
T 4h09_A          334 ALSTISYPK  342 (379)
T ss_dssp             TCCCCCCCT
T ss_pred             CCCEEEECC
Confidence            888766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.91  E-value=0.0002  Score=50.17  Aligned_cols=92  Identities=12%  Similarity=0.047  Sum_probs=63.3

Q ss_pred             hcccCceeeecccc-cCCCCCCcchhhhheecccchhccccceEEEeeCccccCC---cccccccCCCCccEEEeccCCC
Q 042092            9 ARNCAFMNRLLHYS-CLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYS---KISYGFSQFRSLTILNLRHYNF   84 (179)
Q Consensus         9 ~~~~~l~~l~l~~n-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~---~~~~~~~~l~~L~~L~l~~~~l   84 (179)
                      ...+.|+.|+|++| .+...--       ..+...+..-+.|++|+|++|.+++.   .+...+..-+.|+.|+++.|.|
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga-------~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERI-------RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHH-------HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             hcCCCccEEECCCCCCCCHHHH-------HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            34688999999985 7653111       00114566678999999999999632   1223444668999999999999


Q ss_pred             CCC----CCccccCCCCccEEEcCCCc
Q 042092           85 RGS----IPPSFCNLTQLMHLDLSSNI  107 (179)
Q Consensus        85 ~~~----~~~~l~~l~~L~~l~l~~n~  107 (179)
                      ++.    +.+.+..-.+|++|++++|.
T Consensus       111 g~~Ga~ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CHHHHHHHHHHHhhCCceeEEECCCCc
Confidence            853    23345555789999998653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.91  E-value=0.0024  Score=41.52  Aligned_cols=36  Identities=25%  Similarity=0.157  Sum_probs=19.8

Q ss_pred             CccEEEeccCCCCCCCCccccCCCCccEEEcCCCcc
Q 042092           73 SLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNIL  108 (179)
Q Consensus        73 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l  108 (179)
                      +|+.|++++|.++...+..|..+++|+++++.+|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455555555555544444455555566666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-07
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 76  ILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPS--SLSNLEQLREKKLTCSISS 133
           +L+L H +   ++      L  + HLDLS N L    P+  +L  LE L+          
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 134 CIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
            +  L  L ++ L +N L  +  +        L +L+L  N L 
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 4e-06
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 55  CGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPS 114
                + +         ++L  L+LR+    G++P     L  L  L++S N L G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 115 S--LSNLEQL 122
              L   +  
Sbjct: 287 GGNLQRFDVS 296

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 5e-06
 Identities = 18/94 (19%), Positives = 36/94 (38%)

Query: 83  NFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLT 142
             +      F  L QL  L+L  N +S  +P S  +L  L    L  +  +C   L    
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKL 176
           +     +           +K++ +++ DL +++ 
Sbjct: 149 EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 71  FRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCS 130
             +L  L+L     +     +  +LT L  LDL++N +S   P  LS L +L E KL  +
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 131 ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS 177
             S I  L  LT ++    N +   ++   + LK+L  L L +N +S
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 33/155 (21%), Positives = 47/155 (30%), Gaps = 24/155 (15%)

Query: 41  ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP----------- 89
           + +  +    NL       N        S    LT L L         P           
Sbjct: 232 KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 90  ---------PSFCNLTQLMHLDLSSNILSGHIP-SSLSNLEQLREKKLTCSISSCIFELV 139
                        NL  L +L L  N +S   P SSL+ L++L       S  S +  L 
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLT 351

Query: 140 NLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYN 174
           N+  +S   N +S    L     L  +  L L+  
Sbjct: 352 NINWLSAGHNQISDLTPL---ANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILS 109
             L+L  N          F   ++L  L L +       P +F  L +L  L LS N L 
Sbjct: 34  ALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 110 GHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSL---SSNNLSSNVELYMFTKLKSL 166
                    L++LR  +   +             + +   ++   SS +E   F  +K L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 167 EVLDLSYNKLS 177
             + ++   ++
Sbjct: 153 SYIRIADTNIT 163

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 9/120 (7%)

Query: 69  SQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT 128
               SLT L+L           S   L  L  L LS N +S     SL+N   LRE  L 
Sbjct: 168 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227

Query: 129 ----CSISSCIFELVNLTKVSLSSNNLSS-----NVELYMFTKLKSLEVLDLSYNKLSLC 179
                 +   + +   +  V L +NN+S+            TK  S   + L  N +   
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 72  RSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLT-CS 130
               +L+L++          F NL  L  L L +N +S   P + + L +L    L+   
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 131 ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL 178
           +     ++    +      N  + V   +F  L  + V++L  N L  
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 50  QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG----SIPPSFCNLTQLMHLDLSS 105
           Q+L++   + + ++ +      +   ++ L            I  +      L  L+L S
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 106 NILSGHIPSSLSNLEQLREKKLT 128
           N L       +    Q    K+ 
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQ 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.73
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.57
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.48
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.47
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.1
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.09
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.99
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.92
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.48

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=1.4e-20  Score=140.32  Aligned_cols=137  Identities=23%  Similarity=0.316  Sum_probs=84.4

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      ..+.++++|++|++++|.+. ...+..+..+.+|+.+++++|.+....|..+..++.++++++++|.+.+.+|..+..+.
T Consensus        95 ~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~  173 (313)
T d1ogqa_          95 PAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             GGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             cccccccccchhhhcccccc-ccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccc
Confidence            44555555555555555544 23333344444555555555544445566666777777777777777666666555444


Q ss_pred             cccc------cccc-----------------------C-----------------------CccccccCCCcccEEEcCC
Q 042092          121 QLRE------KKLT-----------------------C-----------------------SISSCIFELVNLTKVSLSS  148 (179)
Q Consensus       121 ~L~~------~~l~-----------------------~-----------------------~~~~~~~~~~~L~~L~l~~  148 (179)
                      .+..      +.++                       +                       ..+..+..+++|++|++++
T Consensus       174 ~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~  253 (313)
T d1ogqa_         174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN  253 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCcc
Confidence            4311      0000                       0                       0122345577899999999


Q ss_pred             CccCCchhhHhhcCCCCCcEEEccCCccccC
Q 042092          149 NNLSSNVELYMFTKLKSLEVLDLSYNKLSLC  179 (179)
Q Consensus       149 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  179 (179)
                      |++++.+|..+.. +++|++|++++|+++|+
T Consensus       254 N~l~g~iP~~l~~-L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         254 NRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             SCCEECCCGGGGG-CTTCCEEECCSSEEEEE
T ss_pred             CeecccCChHHhC-CCCCCEEECcCCccccc
Confidence            9999878887766 99999999999999873

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.2e-19  Score=130.29  Aligned_cols=149  Identities=23%  Similarity=0.145  Sum_probs=90.1

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.+++|+|++|.+++..+           ..+..+++|++|++++|.++  ..+ .+..+++|+.|++++|+++ ..+..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~-----------~~f~~l~~L~~L~L~~N~l~--~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~   95 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSL-----------ATLMPYTRLTQLNLDRAELT--KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLL   95 (266)
T ss_dssp             TTCCEEECTTSCCSEEEG-----------GGGTTCTTCCEEECTTSCCC--EEE-CCSCCTTCCEEECCSSCCS-SCCCC
T ss_pred             cCCCEEECcCCcCCCcCH-----------HHhhcccccccccccccccc--ccc-ccccccccccccccccccc-ccccc
Confidence            357778888887774333           45666777777777777665  222 2456666777777777666 33445


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCc------------------------CCCCccccc-----ccccCCccccccCCCccc
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSS------------------------LSNLEQLRE-----KKLTCSISSCIFELVNLT  142 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~------------------------~~~l~~L~~-----~~l~~~~~~~~~~~~~L~  142 (179)
                      +..+++|+++++++|.+....+..                        +..+++++.     +++++..+..+..+++|+
T Consensus        96 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~  175 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccc
Confidence            555666666666666554333333                        333343433     223333444566677777


Q ss_pred             EEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       143 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      +|++++|+++. +|..++. +++|+.|++++|++.
T Consensus       176 ~L~Ls~N~L~~-lp~~~~~-~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         176 TLLLQENSLYT-IPKGFFG-SHLLPFAFLHGNPWL  208 (266)
T ss_dssp             EEECCSSCCCC-CCTTTTT-TCCCSEEECCSCCBC
T ss_pred             eeecccCCCcc-cChhHCC-CCCCCEEEecCCCCC
Confidence            77777777775 6666565 777777777777653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-18  Score=126.26  Aligned_cols=153  Identities=24%  Similarity=0.232  Sum_probs=117.4

Q ss_pred             hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCC
Q 042092            6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus         6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      ..|.....+.+.|-+++.++ .+|           +.+.  +.+++|++++|.++ ...+..|.++++|++|++++|.++
T Consensus         4 C~~~~~~~~~~v~C~~~~L~-~iP-----------~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~   68 (266)
T d1p9ag_           4 CEVSKVASHLEVNCDKRNLT-ALP-----------PDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT   68 (266)
T ss_dssp             SEEECSTTCCEEECTTSCCS-SCC-----------SCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC
T ss_pred             cEEcccCCCeEEEccCCCCC-eeC-----------cCcC--cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccc
Confidence            34667777888899999998 577           4442  57999999999997 456678999999999999999998


Q ss_pred             CCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----------------------------Ccccccc
Q 042092           86 GSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----------------------------SISSCIF  136 (179)
Q Consensus        86 ~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----------------------------~~~~~~~  136 (179)
                      . ++ .++.+++|++|++++|++. ..+..+..+++|+.+.+.+                             ..+..+.
T Consensus        69 ~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~  145 (266)
T d1p9ag_          69 K-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT  145 (266)
T ss_dssp             E-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             c-cc-ccccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceecccccc
Confidence            4 33 3578999999999999998 5577788888777643321                             1222344


Q ss_pred             CCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          137 ELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       137 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      .++.++.+++++|.+++ ++...+..+++|++|++++|+|+
T Consensus       146 ~l~~l~~l~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccchhcccccccccc-cCccccccccccceeecccCCCc
Confidence            56788899999999888 44444555899999999999876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.1e-18  Score=124.36  Aligned_cols=169  Identities=19%  Similarity=0.116  Sum_probs=118.6

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhh--------------eecccchhccccceEEEeeCccccCCcccccccCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLI--------------FALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRS   73 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~--------------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~   73 (179)
                      +...+.|+++++++|.+....+....+..              ...+..+..+++|++|++++|.+. ...+..+....+
T Consensus        52 f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~  130 (284)
T d1ozna_          52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA  130 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTT
T ss_pred             hhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccc-cccccccchhcc
Confidence            44556667777776666532221111000              011345667788888888888775 345556677788


Q ss_pred             ccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCccccccc-----ccCCccccccCCCcccEEEcCC
Q 042092           74 LTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKK-----LTCSISSCIFELVNLTKVSLSS  148 (179)
Q Consensus        74 L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~-----l~~~~~~~~~~~~~L~~L~l~~  148 (179)
                      |+.+++++|.++.+.+..|..+++|+.|++++|.+.+..+..+..+++|+.+.     +.+..|..|..+++|++|++++
T Consensus       131 L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~  210 (284)
T d1ozna_         131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (284)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccc
Confidence            88888888888866667777888888888888888766677777777777643     4455677888889999999999


Q ss_pred             CccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          149 NNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       149 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      |.+.+..+. .+..+++|+.|++++|++.+
T Consensus       211 N~i~~~~~~-~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         211 NNLSALPTE-ALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             SCCSCCCHH-HHTTCTTCCEEECCSSCEEC
T ss_pred             ccccccccc-ccccccccCEEEecCCCCCC
Confidence            999884444 45559999999999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=3.2e-18  Score=119.18  Aligned_cols=130  Identities=24%  Similarity=0.280  Sum_probs=93.6

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF   92 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   92 (179)
                      ..+.++.+++.++ .+|           ..+  .+.+++|++++|.|+.......|.++++|+.|++++|.+....+..+
T Consensus         9 ~~~~v~Cs~~~L~-~iP-----------~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~   74 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIP-----------RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             ETTEEECTTSCCS-SCC-----------SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCEEEEeCCCcC-ccC-----------CCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc
Confidence            3567899999988 677           444  26789999999999733456778899999999999999998888889


Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEcc
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLS  172 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  172 (179)
                      ..+++|++|++++|++....+..|..+++                   |++|++++|.++. ++...+..+++|++++++
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~-------------------L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKMFLGLHQ-------------------LKTLNLYDNQISC-VMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTT-------------------CCEEECCSSCCCE-ECTTSSTTCTTCCEEECT
T ss_pred             ccccccceeeeccccccccCHHHHhCCCc-------------------ccccccCCccccc-cCHHHhcCCccccccccc
Confidence            99999999999999998665666666554                   4455555555544 322233334555555555


Q ss_pred             CCcc
Q 042092          173 YNKL  176 (179)
Q Consensus       173 ~n~l  176 (179)
                      +|++
T Consensus       135 ~N~~  138 (192)
T d1w8aa_         135 SNPF  138 (192)
T ss_dssp             TCCB
T ss_pred             cccc
Confidence            5544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3e-17  Score=120.60  Aligned_cols=155  Identities=23%  Similarity=0.154  Sum_probs=120.6

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccC------------------------Cccccc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNY------------------------SKISYG   67 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~------------------------~~~~~~   67 (179)
                      ..++.|++++|.++...+           ..+..++.|+++++++|.+..                        ...+..
T Consensus        32 ~~~~~L~Ls~N~i~~i~~-----------~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPA-----------ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             TTCSEEECTTSCCCEECT-----------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CCCCEEECcCCcCCCCCH-----------HHhhccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            457899999999985444           568889999999999887641                        111345


Q ss_pred             ccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC-----CccccccCCCccc
Q 042092           68 FSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC-----SISSCIFELVNLT  142 (179)
Q Consensus        68 ~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~-----~~~~~~~~~~~L~  142 (179)
                      |.++++|++|++++|.+....+..+....+|+.+++++|.++...+..+..+++|+.+.+.+     ..+..+..+++|+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            67788899999999988766667777888899999999998866567788888887765544     3456677889999


Q ss_pred             EEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          143 KVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       143 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      .+++++|.+.+..|.. +..+++|++|++++|.+++
T Consensus       181 ~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         181 RLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             EEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSC
T ss_pred             hhhhhhccccccChhH-hhhhhhccccccccccccc
Confidence            9999999999855555 4459999999999998875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=1.6e-17  Score=123.65  Aligned_cols=104  Identities=29%  Similarity=0.373  Sum_probs=92.2

Q ss_pred             cCceeeecccccCCC--CCCcchhhhheecccchhccccceEEEeeC-ccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092           12 CAFMNRLLHYSCLSN--SFPSRKKLLIFALNESLFFILHSQNLNLCG-NDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      .+++.|+|+++.+.+  .+|           +.+.++++|++|++++ |.++ ...|..+.++++|++|++++|.+.+..
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp-----------~~l~~L~~L~~L~Ls~~N~l~-g~iP~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIP-----------SSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECC-----------GGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             EEEEEEECCCCCCCCCCCCC-----------hHHhcCccccccccccccccc-cccccccccccccchhhhccccccccc
Confidence            369999999999987  467           8999999999999997 7887 467888999999999999999999888


Q ss_pred             CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccc
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKL  127 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l  127 (179)
                      +..+..+..|+++++++|.+...+|..+..++.++...+
T Consensus       118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            888999999999999999998888999999988887444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=8.7e-16  Score=107.22  Aligned_cols=147  Identities=22%  Similarity=0.295  Sum_probs=117.4

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      ....+++.|++++|.++ .++            .+..+++|++|++++|.++ . .+. +.++++|++|++++|.+... 
T Consensus        37 ~~l~~l~~L~l~~~~i~-~l~------------~l~~l~nL~~L~Ls~N~l~-~-~~~-l~~l~~L~~L~l~~n~~~~~-   99 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIK-SID------------GVEYLNNLTQINFSNNQLT-D-ITP-LKNLTKLVDILMNNNQIADI-   99 (199)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCC-C-CGG-GTTCTTCCEEECCSSCCCCC-
T ss_pred             HHhcCCCEEECCCCCCC-Ccc------------ccccCCCcCcCcccccccc-C-ccc-ccCCcccccccccccccccc-
Confidence            34678899999999988 454            5788999999999999997 2 333 88999999999999988743 


Q ss_pred             CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc---cccccCCCcccEEEcCCCccCCchhhHhhcCCCC
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI---SSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKS  165 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  165 (179)
                      + .+..++.|+.++++++.....  ..+..+++|+.+.+.+..   ...+..++++++|++.+|.+++ ++.  +..+++
T Consensus       100 ~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~-l~~--l~~l~~  173 (199)
T d2omxa2         100 T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-LKP--LANLTT  173 (199)
T ss_dssp             G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGG--GTTCTT
T ss_pred             c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcccccccccccccccccccccccC-Ccc--ccCCCC
Confidence            3 478899999999999987632  346778888887776532   2346778899999999999988 432  345999


Q ss_pred             CcEEEccCCcccc
Q 042092          166 LEVLDLSYNKLSL  178 (179)
Q Consensus       166 L~~L~l~~n~l~~  178 (179)
                      |+.|++++|+++.
T Consensus       174 L~~L~ls~N~i~~  186 (199)
T d2omxa2         174 LERLDISSNKVSD  186 (199)
T ss_dssp             CCEEECCSSCCCC
T ss_pred             CCEEECCCCCCCC
Confidence            9999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=6.8e-17  Score=112.35  Aligned_cols=150  Identities=21%  Similarity=0.211  Sum_probs=112.2

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      ..+++|++++|.++..++.          ..|..+++|++|++++|.+. ...+..+..+++|++|++++|+++...+..
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~----------~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~   97 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSD----------GLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCS----------CSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CCCCEEEeCCCCCcccccc----------cccCCCceEeeeeccccccc-cccccccccccccceeeeccccccccCHHH
Confidence            4789999999999865531          56788999999999999998 567888999999999999999999888888


Q ss_pred             ccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccC----CCcccEEEcCCCccCCchhhHhhcCCCCCc
Q 042092           92 FCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFE----LVNLTKVSLSSNNLSSNVELYMFTKLKSLE  167 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  167 (179)
                      |.++++|++|++++|.++...++.|..+++|+++.+.++.-.....    ...++.+.+..+.++...|.    .+..++
T Consensus        98 F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~----~l~~~~  173 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS----KVRDVQ  173 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST----TTTTSB
T ss_pred             HhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCCh----hhcCCE
Confidence            9999999999999999997777788888877776665532221111    11244445555555543442    245556


Q ss_pred             EEEccCCcc
Q 042092          168 VLDLSYNKL  176 (179)
Q Consensus       168 ~L~l~~n~l  176 (179)
                      .++++.|.+
T Consensus       174 l~~L~~n~l  182 (192)
T d1w8aa_         174 IKDLPHSEF  182 (192)
T ss_dssp             GGGSCTTTC
T ss_pred             eeecCHhhC
Confidence            666766665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.1e-15  Score=98.96  Aligned_cols=120  Identities=19%  Similarity=0.220  Sum_probs=94.8

Q ss_pred             eeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccC
Q 042092           15 MNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCN   94 (179)
Q Consensus        15 ~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~   94 (179)
                      +.|++++|.++ .++            .+..++.|++|++++|.++  ..|..+..+++|+.|++++|.++.. | .+..
T Consensus         1 R~L~Ls~n~l~-~l~------------~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~   63 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC------------HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENV-D-GVAN   63 (124)
T ss_dssp             SEEECTTSCCS-SCC------------CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTT
T ss_pred             CEEEcCCCCCC-CCc------------ccccCCCCCEEECCCCccC--cchhhhhhhhccccccccccccccc-C-cccc
Confidence            57899999998 556            5889999999999999996  4566788999999999999999843 4 5889


Q ss_pred             CCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCc--hhhHhhcCCCCCcEE
Q 042092           95 LTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSN--VELYMFTKLKSLEVL  169 (179)
Q Consensus        95 l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L  169 (179)
                      +++|+++++++|++. .++.                 ...+..+++|+++++++|.+.+.  .+..+...+|+++.+
T Consensus        64 l~~L~~L~l~~N~i~-~~~~-----------------~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          64 LPRLQELLLCNNRLQ-QSAA-----------------IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCEEECCSSCCC-SSST-----------------TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccccCeEECCCCccC-CCCC-----------------chhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999999999987 2221                 12344567899999999998752  244555668888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=2e-15  Score=111.65  Aligned_cols=45  Identities=22%  Similarity=0.228  Sum_probs=31.3

Q ss_pred             ccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCccc
Q 042092          131 ISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       131 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  177 (179)
                      .+..+..+++|++|++++|.++. +|..+.. +++|++|++++|+|+
T Consensus       211 ~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~-l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         211 DNGSLANTPHLRELHLNNNKLVK-VPGGLAD-HKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CTTTGGGSTTCCEEECCSSCCSS-CCTTTTT-CSSCCEEECCSSCCC
T ss_pred             ccccccccccceeeecccccccc-ccccccc-ccCCCEEECCCCccC
Confidence            34555667778888888887776 5555444 777888888777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.9e-15  Score=105.42  Aligned_cols=146  Identities=23%  Similarity=0.288  Sum_probs=101.5

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCC
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIP   89 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   89 (179)
                      .+..+++|++++|.++. ++            .+..+++|++|++++|.++ . .+ .+..+++|++|++++|++++ ++
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~------------~l~~l~~L~~L~L~~n~i~-~-l~-~~~~l~~L~~L~l~~n~i~~-l~  106 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ------------GIQYLPNVTKLFLNGNKLT-D-IK-PLANLKNLGWLFLDENKVKD-LS  106 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT------------TGGGCTTCCEEECCSSCCC-C-CG-GGTTCTTCCEEECCSSCCCC-GG
T ss_pred             HhcCccEEECcCCCCCC-ch------------hHhhCCCCCEEeCCCcccc-C-cc-ccccCccccccccccccccc-cc
Confidence            35678888999888873 44            4778889999999999886 2 33 35788899999999998874 33


Q ss_pred             ccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc---cccccCCCcccEEEcCCCccCCchhhHhhcCCCCC
Q 042092           90 PSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI---SSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSL  166 (179)
Q Consensus        90 ~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L  166 (179)
                       .+..+++|+.+++++|.+. . ...+..++.++...+.+..   +..+..+++|+++++++|.+.+ ++.  +..+++|
T Consensus       107 -~l~~l~~L~~L~l~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~~--l~~l~~L  180 (210)
T d1h6ta2         107 -SLKDLKKLKSLSLEHNGIS-D-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKL  180 (210)
T ss_dssp             -GGTTCTTCCEEECTTSCCC-C-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTC
T ss_pred             -ccccccccccccccccccc-c-cccccccccccccccccccccccccccccccccccccccccccc-ccc--ccCCCCC
Confidence             4778888999999888875 2 2345566666654444321   2334556777777777777776 332  3347777


Q ss_pred             cEEEccCCcccc
Q 042092          167 EVLDLSYNKLSL  178 (179)
Q Consensus       167 ~~L~l~~n~l~~  178 (179)
                      +.|++++|+++.
T Consensus       181 ~~L~Ls~N~i~~  192 (210)
T d1h6ta2         181 QNLYLSKNHISD  192 (210)
T ss_dssp             CEEECCSSCCCB
T ss_pred             CEEECCCCCCCC
Confidence            777777777653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.2e-16  Score=105.56  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=95.3

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      .....++.||+++|.++ .++           ..+..++.|++|++++|.++  ..+ .+..+++|++|++++|.++...
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~-----------~~~~~l~~L~~L~Ls~N~i~--~l~-~~~~l~~L~~L~ls~N~i~~l~   79 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIE-----------NLGATLDQFDAIDFSDNEIR--KLD-GFPLLRRLKTLLVNNNRICRIG   79 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCC-----------CGGGGTTCCSEEECCSSCCC--EEC-CCCCCSSCCEEECCSSCCCEEC
T ss_pred             cCcCcCcEEECCCCCCC-ccC-----------ccccccccCCEEECCCCCCC--ccC-CcccCcchhhhhcccccccCCC
Confidence            34457888999999988 456           55677888999999999886  233 4788889999999999988554


Q ss_pred             CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCchh--hHhhcCCCCC
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVE--LYMFTKLKSL  166 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~l~~L  166 (179)
                      +..+..+++|+++++++|.+.. +++                 ...+..+++|+++++++|.+.....  ......+++|
T Consensus        80 ~~~~~~l~~L~~L~L~~N~i~~-~~~-----------------l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L  141 (162)
T d1a9na_          80 EGLDQALPDLTELILTNNSLVE-LGD-----------------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV  141 (162)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCC-GGG-----------------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred             ccccccccccccceeccccccc-ccc-----------------ccccccccccchhhcCCCccccccchHHHHHHHCCCc
Confidence            4455678899999999998762 111                 1234556789999999999976221  2344559999


Q ss_pred             cEEEc
Q 042092          167 EVLDL  171 (179)
Q Consensus       167 ~~L~l  171 (179)
                      +.||-
T Consensus       142 ~~LD~  146 (162)
T d1a9na_         142 RVLDF  146 (162)
T ss_dssp             SEETT
T ss_pred             CeeCC
Confidence            99873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=6.5e-15  Score=95.26  Aligned_cols=104  Identities=26%  Similarity=0.392  Sum_probs=84.3

Q ss_pred             eEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccC
Q 042092           50 QNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTC  129 (179)
Q Consensus        50 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~  129 (179)
                      +.|++++|+++  ..+ .+..+++|++|++++|.++ .+|+.+..+++|+++++++|.+. .+|.               
T Consensus         1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~---------------   60 (124)
T d1dcea3           1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG---------------   60 (124)
T ss_dssp             SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG---------------
T ss_pred             CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc---------------
Confidence            46899999997  344 3789999999999999998 66888999999999999999987 2221               


Q ss_pred             CccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          130 SISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       130 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                           +..+++|+++++++|.+.+......+..+++|+.+++++|++++
T Consensus        61 -----~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          61 -----VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             -----GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             -----cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence                 34567899999999999874332334459999999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=2.3e-14  Score=100.72  Aligned_cols=143  Identities=24%  Similarity=0.255  Sum_probs=113.4

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ...+++|+.|++++|.+++ ++            .+..+++|++|++++|.++  ..+ .+..+++|+.|++++|.+.. 
T Consensus        64 l~~l~~L~~L~L~~n~i~~-l~------------~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~~~~~~-  126 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD-IK------------PLANLKNLGWLFLDENKVK--DLS-SLKDLKKLKSLSLEHNGISD-  126 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG------------GGTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCEEECTTSCCCC-
T ss_pred             HhhCCCCCEEeCCCccccC-cc------------ccccCcccccccccccccc--ccc-cccccccccccccccccccc-
Confidence            3457899999999999985 44            4788999999999999997  344 47899999999999998763 


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCcc---ccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSIS---SCIFELVNLTKVSLSSNNLSSNVELYMFTKLK  164 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  164 (179)
                       .+.+..++.++.+++++|.+.+  +..+..+++|+...+.+...   ..++.+++|++|++++|.+++ ++.  +..++
T Consensus       127 -~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~-l~~--l~~l~  200 (210)
T d1h6ta2         127 -INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LRA--LAGLK  200 (210)
T ss_dssp             -CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CGG--GTTCT
T ss_pred             -cccccccccccccccccccccc--cccccccccccccccccccccccccccCCCCCCEEECCCCCCCC-Chh--hcCCC
Confidence             3467889999999999999873  34566677788766654322   246788999999999999987 553  34599


Q ss_pred             CCcEEEccC
Q 042092          165 SLEVLDLSY  173 (179)
Q Consensus       165 ~L~~L~l~~  173 (179)
                      +|++|++++
T Consensus       201 ~L~~L~Ls~  209 (210)
T d1h6ta2         201 NLDVLELFS  209 (210)
T ss_dssp             TCSEEEEEE
T ss_pred             CCCEEEccC
Confidence            999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=3.7e-14  Score=100.64  Aligned_cols=149  Identities=18%  Similarity=0.238  Sum_probs=105.0

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI   88 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~   88 (179)
                      ..+.+|+.|++.+|.++ .++            .+..+++|++|++++|.++ .. . .+..+++++++++++|.++.. 
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~------------~l~~l~~L~~L~ls~n~i~-~~-~-~l~~l~~l~~l~~~~n~~~~i-  100 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TIE------------GVQYLNNLIGLELKDNQIT-DL-A-PLKNLTKITELELSGNPLKNV-  100 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT------------TGGGCTTCCEEECCSSCCC-CC-G-GGTTCCSCCEEECCSCCCSCC-
T ss_pred             HHcCCcCEEECCCCCCC-cch------------hHhcCCCCcEeecCCceee-cc-c-ccccccccccccccccccccc-
Confidence            44678888999999887 445            4788899999999999886 22 2 277888888998888887733 


Q ss_pred             CccccCCCCccEEEcCCCccCCCCC--------------------CcCCCCcccccccccCCc---cccccCCCcccEEE
Q 042092           89 PPSFCNLTQLMHLDLSSNILSGHIP--------------------SSLSNLEQLREKKLTCSI---SSCIFELVNLTKVS  145 (179)
Q Consensus        89 ~~~l~~l~~L~~l~l~~n~l~~~~~--------------------~~~~~l~~L~~~~l~~~~---~~~~~~~~~L~~L~  145 (179)
                       +.+..+++|++++++++...+..+                    ..+...++|+.+.+.+..   ...+..+++|++|+
T Consensus       101 -~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~  179 (227)
T d1h6ua2         101 -SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK  179 (227)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             -ccccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecc
Confidence             356778888888888877653211                    112233344444444321   23467788999999


Q ss_pred             cCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          146 LSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       146 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +++|.+++ ++.  +..+++|++|++++|++++
T Consensus       180 Ls~n~l~~-l~~--l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         180 ADDNKISD-ISP--LASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             CCSSCCCC-CGG--GGGCTTCCEEECTTSCCCB
T ss_pred             cCCCccCC-Chh--hcCCCCCCEEECcCCcCCC
Confidence            99999987 443  3448999999999998874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=6.3e-14  Score=97.58  Aligned_cols=139  Identities=25%  Similarity=0.315  Sum_probs=109.8

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ...+++|+.|++++|.+++ ++            .+..+++|++|++++|.+.  ..+ .+.++++|+.++++++.+...
T Consensus        58 l~~l~nL~~L~Ls~N~l~~-~~------------~l~~l~~L~~L~l~~n~~~--~~~-~l~~l~~L~~L~l~~~~~~~~  121 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTD-IT------------PLKNLTKLVDILMNNNQIA--DIT-PLANLTNLTGLTLFNNQITDI  121 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG------------GGTTCTTCCEEECCSSCCC--CCG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             cccCCCcCcCccccccccC-cc------------cccCCcccccccccccccc--ccc-ccccccccccccccccccccc
Confidence            4567899999999999984 44            4889999999999999886  233 478999999999999987643


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc---cccccCCCcccEEEcCCCccCCchhhHhhcCCC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI---SSCIFELVNLTKVSLSSNNLSSNVELYMFTKLK  164 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  164 (179)
                        ..+..+++|+.+++++|.+. .+ +.+..+++++.+.+.+..   ...++.+++|++|++++|++++ ++ .+. .++
T Consensus       122 --~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~-i~-~l~-~L~  194 (199)
T d2omxa2         122 --DPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLA-KLT  194 (199)
T ss_dssp             --GGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGG-GCT
T ss_pred             --cccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCCccccCCCCCCEEECCCCCCCC-Cc-ccc-CCC
Confidence              45778999999999999987 33 357777888876665432   2347788999999999999988 54 244 488


Q ss_pred             CCcEE
Q 042092          165 SLEVL  169 (179)
Q Consensus       165 ~L~~L  169 (179)
                      +|+.|
T Consensus       195 ~L~~L  199 (199)
T d2omxa2         195 NLESL  199 (199)
T ss_dssp             TCSEE
T ss_pred             CCCcC
Confidence            98876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=6.2e-14  Score=103.44  Aligned_cols=151  Identities=19%  Similarity=0.160  Sum_probs=95.6

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCcc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPS   91 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~   91 (179)
                      +.+++|++++|.++...+           ..+.++++|++|++++|.+. ...+..|..+++|+.|++++|+++. +|..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~-----------~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~   97 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKD-----------GDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKE-LPEK   97 (305)
T ss_dssp             TTCCEEECCSSCCCCBCT-----------TTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSB-CCSS
T ss_pred             CCCCEEECcCCcCCCcCh-----------hHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCccCc-Cccc
Confidence            568889999998884333           46788888999999999887 4567778888889999888888763 3332


Q ss_pred             ccCCCCccEEEcCCCccCCC--------------------------CCCcCCCCccccc---------------------
Q 042092           92 FCNLTQLMHLDLSSNILSGH--------------------------IPSSLSNLEQLRE---------------------  124 (179)
Q Consensus        92 l~~l~~L~~l~l~~n~l~~~--------------------------~~~~~~~l~~L~~---------------------  124 (179)
                      +  ...++.+++..|.+...                          .+..+..+++|+.                     
T Consensus        98 ~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~  175 (305)
T d1xkua_          98 M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE  175 (305)
T ss_dssp             C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSE
T ss_pred             h--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCE
Confidence            2  12344444444444311                          0111222222222                     


Q ss_pred             ccc-----cCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          125 KKL-----TCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       125 ~~l-----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +.+     .+..+..+..++.+++|++++|.+.+..+. .+..+++|++|++++|+++.
T Consensus       176 L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~-~~~~l~~L~~L~L~~N~L~~  233 (305)
T d1xkua_         176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVK  233 (305)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSS
T ss_pred             EECCCCcCCCCChhHhhccccccccccccccccccccc-cccccccceeeecccccccc
Confidence            111     122344556677788888888888874444 34448889999998888753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-14  Score=97.39  Aligned_cols=114  Identities=20%  Similarity=0.183  Sum_probs=89.6

Q ss_pred             chhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCcc
Q 042092           42 SLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQ  121 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~  121 (179)
                      .+.+...+++|++++|+|+  ..+..+..+++|+.|++++|.++..  +.+..+++|++|++++|.+... ++.      
T Consensus        13 ~~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l-~~~------   81 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI-GEG------   81 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE-CSC------
T ss_pred             hccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCC-Ccc------
Confidence            4667788999999999997  3456667899999999999999844  3578899999999999998732 221      


Q ss_pred             cccccccCCccccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          122 LREKKLTCSISSCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       122 L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                                  .+..+++|++|++++|.+.+......+..+++|+++++++|+++.
T Consensus        82 ------------~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          82 ------------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             ------------HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ------------ccccccccccceeccccccccccccccccccccchhhcCCCcccc
Confidence                        123457899999999999883322334559999999999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=2e-13  Score=103.12  Aligned_cols=144  Identities=21%  Similarity=0.215  Sum_probs=85.1

Q ss_pred             cccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCC-
Q 042092           10 RNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSI-   88 (179)
Q Consensus        10 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-   88 (179)
                      ..+.++.+++++|.++. ++            .+..++.++.+++++|.+++  .+ .+..+++|+.++++++.+.+.. 
T Consensus       217 ~~~~L~~L~l~~n~l~~-~~------------~l~~l~~L~~L~l~~n~l~~--~~-~~~~~~~L~~L~l~~~~l~~~~~  280 (384)
T d2omza2         217 ILTNLDELSLNGNQLKD-IG------------TLASLTNLTDLDLANNQISN--LA-PLSGLTKLTELKLGANQISNISP  280 (384)
T ss_dssp             GCTTCCEEECCSSCCCC-CG------------GGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCCCGG
T ss_pred             ccCCCCEEECCCCCCCC-cc------------hhhcccccchhccccCccCC--CC-cccccccCCEeeccCcccCCCCc
Confidence            35677888888887763 33            46667777777777777652  22 2566677777777776665321 


Q ss_pred             -------------------CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc---cccccCCCcccEEEc
Q 042092           89 -------------------PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI---SSCIFELVNLTKVSL  146 (179)
Q Consensus        89 -------------------~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~---~~~~~~~~~L~~L~l  146 (179)
                                         ...+..+++++++++++|++.+. + .+..+++|+.+.+.+..   +..+..+++|++|++
T Consensus       281 ~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l  358 (384)
T d2omza2         281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSA  358 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEEC
Confidence                               12234455666666666666532 2 25555666665554321   224556666777777


Q ss_pred             CCCccCCchhhHhhcCCCCCcEEEccCC
Q 042092          147 SSNNLSSNVELYMFTKLKSLEVLDLSYN  174 (179)
Q Consensus       147 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n  174 (179)
                      ++|++++..|   +..+++|+.|++++|
T Consensus       359 ~~N~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         359 GHNQISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCBCGG---GTTCTTCSEEECCCE
T ss_pred             CCCcCCCChh---hccCCCCCEeeCCCC
Confidence            7777666332   233666777776665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=98.74  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=104.1

Q ss_pred             cCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEecc-CCCCCCCCc
Q 042092           12 CAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRH-YNFRGSIPP   90 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~   90 (179)
                      +.++.|++++|.++...+           ..|.++++|++|++++|.+.....+..|.+++.++.+.+.. +.+....+.
T Consensus        29 ~~l~~L~Ls~n~i~~l~~-----------~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQK-----------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             SCCSEEEEESCCCCEECT-----------TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCCEEECcCCcCCccCh-----------hHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc
Confidence            478999999999984333           56888999999999999886334456788899999988765 567767777


Q ss_pred             cccCCCCccEEEcCCCccCCCCC-CcCCCCccccc-------------------------ccccC----CccccccCCCc
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIP-SSLSNLEQLRE-------------------------KKLTC----SISSCIFELVN  140 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~-------------------------~~l~~----~~~~~~~~~~~  140 (179)
                      .|..+++|+++++.+|.+....+ ..+..+..+..                         ..+.+    .++......++
T Consensus        98 ~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~  177 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQ  177 (242)
T ss_dssp             SEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCC
T ss_pred             cccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchh
Confidence            78889999999999998863222 11222222221                         11111    11122223344


Q ss_pred             ccEE-EcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          141 LTKV-SLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       141 L~~L-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      +.++ ++++|.++. ++...+.++++|++|++++|+++.
T Consensus       178 l~~~~~l~~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         178 LDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             EEEEECTTCTTCCC-CCTTTTTTSCCCSEEECTTSCCCC
T ss_pred             hhcccccccccccc-ccHHHhcCCCCCCEEECCCCcCCc
Confidence            4444 567777776 665556668999999999998863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=6.6e-13  Score=94.02  Aligned_cols=146  Identities=21%  Similarity=0.259  Sum_probs=105.9

Q ss_pred             hhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCC
Q 042092            7 ECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus         7 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~   86 (179)
                      ....+++|+.+++++|.+++. +            .+..+++++.+++++|.++  ..+ .+.++++|+.++++++...+
T Consensus        58 ~l~~l~~L~~L~ls~n~i~~~-~------------~l~~l~~l~~l~~~~n~~~--~i~-~l~~l~~L~~l~l~~~~~~~  121 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQITDL-A------------PLKNLTKITELELSGNPLK--NVS-AIAGLQSIKTLDLTSTQITD  121 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCCCC-G------------GGTTCCSCCEEECCSCCCS--CCG-GGTTCTTCCEEECTTSCCCC
T ss_pred             hHhcCCCCcEeecCCceeecc-c------------ccccccccccccccccccc--ccc-cccccccccccccccccccc
Confidence            346788999999999998843 3            3677778888888888775  222 35677777777777776542


Q ss_pred             C--------------------CCccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCc---cccccCCCcccE
Q 042092           87 S--------------------IPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSI---SSCIFELVNLTK  143 (179)
Q Consensus        87 ~--------------------~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~---~~~~~~~~~L~~  143 (179)
                      .                    ....+..+++|+++++++|.+.+.  ..++.+++|+.+++.+..   ...+..+++|++
T Consensus       122 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~  199 (227)
T d1h6ua2         122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISPLASLPNLIE  199 (227)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCE
T ss_pred             cchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCCChhhcCCCCCCE
Confidence            1                    112345568899999999988633  337788888887776532   234678899999


Q ss_pred             EEcCCCccCCchhhHhhcCCCCCcEEEccC
Q 042092          144 VSLSSNNLSSNVELYMFTKLKSLEVLDLSY  173 (179)
Q Consensus       144 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  173 (179)
                      |++++|++++ ++.  ++.+++|+.|++++
T Consensus       200 L~Ls~N~lt~-i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         200 VHLKNNQISD-VSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             EECTTSCCCB-CGG--GTTCTTCCEEEEEE
T ss_pred             EECcCCcCCC-Ccc--cccCCCCCEEEeeC
Confidence            9999999998 443  44599999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=7.5e-13  Score=99.92  Aligned_cols=150  Identities=25%  Similarity=0.316  Sum_probs=109.4

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ....+.++.+++++|.+++..+             ...+++++++++++|.++  ..+ .+..+++|+.+++++|.+++.
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~-------------~~~~~~L~~L~l~~n~l~--~~~-~l~~l~~L~~L~l~~n~l~~~  256 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP-------------LGILTNLDELSLNGNQLK--DIG-TLASLTNLTDLDLANNQISNL  256 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-------------GGGCTTCCEEECCSSCCC--CCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccceeeccCCccCCCCc-------------ccccCCCCEEECCCCCCC--Ccc-hhhcccccchhccccCccCCC
Confidence            4556788999999999885433             566889999999999986  233 578899999999999998854


Q ss_pred             CCccccCCCCccEEEcCCCccCCCCC--------------------CcCCCCcccccccccCCcc---ccccCCCcccEE
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHIP--------------------SSLSNLEQLREKKLTCSIS---SCIFELVNLTKV  144 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~~--------------------~~~~~l~~L~~~~l~~~~~---~~~~~~~~L~~L  144 (179)
                      .  .+..+++|++++++++.+.+..+                    ..+..+++++.+++.+.-.   ..+..+++|++|
T Consensus       257 ~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L  334 (384)
T d2omza2         257 A--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL  334 (384)
T ss_dssp             G--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEE
T ss_pred             C--cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEE
Confidence            3  37788999999999998863211                    0112222333333332111   236778899999


Q ss_pred             EcCCCccCCchhhHhhcCCCCCcEEEccCCcccc
Q 042092          145 SLSSNNLSSNVELYMFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       145 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (179)
                      ++++|.+++ ++ .+. .+++|++|++++|++++
T Consensus       335 ~L~~n~l~~-l~-~l~-~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         335 FFANNKVSD-VS-SLA-NLTNINWLSAGHNQISD  365 (384)
T ss_dssp             ECCSSCCCC-CG-GGG-GCTTCCEEECCSSCCCB
T ss_pred             ECCCCCCCC-Ch-hHc-CCCCCCEEECCCCcCCC
Confidence            999999987 54 344 49999999999999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-12  Score=93.56  Aligned_cols=155  Identities=14%  Similarity=0.088  Sum_probs=87.7

Q ss_pred             hhhhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeC-ccccCCcccccccCCCCccEEEeccCC-
Q 042092            6 SECARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCG-NDFNYSKISYGFSQFRSLTILNLRHYN-   83 (179)
Q Consensus         6 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~~~-   83 (179)
                      ..+..+++|+++++++|.+...++.          ..+..++.++++.+.. +.+. ...+..|.++++|+.++++++. 
T Consensus        47 ~~f~~l~~L~~L~ls~n~~~~~i~~----------~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          47 GAFSGFGDLEKIEISQNDVLEVIEA----------DVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             TTTTTCTTCCEEEEESCTTCCEECS----------SSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCEEEEESCCC
T ss_pred             hHhhccchhhhhhhccccccceeec----------ccccccccccccccccccccc-ccccccccccccccccccchhhh
Confidence            3467788999999999988754441          2333444444444332 2232 2233334444444444444444 


Q ss_pred             ------------------------CCCCCCccccCC-CCccEEEcCCCccCCCCCCcCCCCccccc------ccccCCcc
Q 042092           84 ------------------------FRGSIPPSFCNL-TQLMHLDLSSNILSGHIPSSLSNLEQLRE------KKLTCSIS  132 (179)
Q Consensus        84 ------------------------l~~~~~~~l~~l-~~L~~l~l~~n~l~~~~~~~~~~l~~L~~------~~l~~~~~  132 (179)
                                              +....+..+..+ ..++.+++.+|.+.. ++.......++..      +.+....+
T Consensus       116 ~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~  194 (242)
T d1xwdc1         116 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPN  194 (242)
T ss_dssp             CSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCT
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccccccccccccccH
Confidence                                    433333344443 356677777777763 3333333343333      23333334


Q ss_pred             ccccCCCcccEEEcCCCccCCchhhHhhcCCCCCcEEEccC
Q 042092          133 SCIFELVNLTKVSLSSNNLSSNVELYMFTKLKSLEVLDLSY  173 (179)
Q Consensus       133 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  173 (179)
                      ..+..+++|++|++++|+++. +|...++.+++|+.+++..
T Consensus       195 ~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         195 DVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTTTSCCCSEEECTTSCCCC-CCSSSCTTCCEEESSSEES
T ss_pred             HHhcCCCCCCEEECCCCcCCc-cCHHHHcCCcccccCcCCC
Confidence            457889999999999999997 6555455566666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.8e-12  Score=86.79  Aligned_cols=107  Identities=17%  Similarity=0.076  Sum_probs=84.6

Q ss_pred             ceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCcc-ccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092           14 FMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGND-FNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF   92 (179)
Q Consensus        14 l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   92 (179)
                      .+.++.+++.+. ..|           ..+..++++++|++.++. ++ ...+..|.++++|+.|++++|+++.+.+..|
T Consensus        10 ~~~l~c~~~~~~-~~p-----------~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f   76 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSL-----------HHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAF   76 (156)
T ss_dssp             SSCEECCSSCCC-TTT-----------TTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGG
T ss_pred             CCeEEecCCCCc-cCc-----------ccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccc
Confidence            356788888877 456           577888999999998764 76 4667789999999999999999998878889


Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~  153 (179)
                      ..+++|++|++++|.+. .+|...-                   ....|++|++++|.+.-
T Consensus        77 ~~l~~L~~L~Ls~N~l~-~l~~~~~-------------------~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          77 HFTPRLSRLNLSFNALE-SLSWKTV-------------------QGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             GSCSCCCEEECCSSCCS-CCCSTTT-------------------CSCCCCEEECCSSCCCC
T ss_pred             cccccccceeccCCCCc-ccChhhh-------------------ccccccccccCCCcccC
Confidence            99999999999999998 4333211                   12358899999999864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=3.4e-14  Score=99.02  Aligned_cols=124  Identities=23%  Similarity=0.270  Sum_probs=86.8

Q ss_pred             cchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCCCCCcCCCCc
Q 042092           41 ESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGHIPSSLSNLE  120 (179)
Q Consensus        41 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~  120 (179)
                      .++..+++|++|++++|.|+ . .+ .+..+++|+.|++++|.++ .++.....+++|+++++++|.+.. + +.+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-K-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-C-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHH
T ss_pred             hHHhcccccceeECcccCCC-C-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccc
Confidence            67888899999999999986 2 33 4778889999999999887 445545556788999999998873 3 3355666


Q ss_pred             ccccccccCC----cc--ccccCCCcccEEEcCCCccCCchhh---------HhhcCCCCCcEEE
Q 042092          121 QLREKKLTCS----IS--SCIFELVNLTKVSLSSNNLSSNVEL---------YMFTKLKSLEVLD  170 (179)
Q Consensus       121 ~L~~~~l~~~----~~--~~~~~~~~L~~L~l~~n~~~~~~~~---------~~~~~l~~L~~L~  170 (179)
                      +|+.+.+.++    ++  ..+..+++|+.|++++|.+....+.         .+...+++|+.||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            6766555542    12  3456778888888888877552221         1234488888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=1.7e-14  Score=100.60  Aligned_cols=127  Identities=19%  Similarity=0.102  Sum_probs=96.6

Q ss_pred             hhcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            8 CARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ...+++|++|++++|.++ .++            .+..+++|+.|++++|.++  ..+..+..+++|+.|++++|.++..
T Consensus        44 l~~L~~L~~L~Ls~n~I~-~i~------------~l~~l~~L~~L~Ls~N~i~--~i~~~~~~~~~L~~L~l~~N~i~~l  108 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIE-KIS------------SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             HHHTTTCCEEECSEEEES-CCC------------CHHHHTTCCEEECCEEEEC--SCSSHHHHHHHCCEEECSEEECCCH
T ss_pred             HhcccccceeECcccCCC-Ccc------------cccCCccccChhhcccccc--ccccccccccccccccccccccccc
Confidence            456789999999999998 555            5889999999999999996  3454445567899999999999843


Q ss_pred             CCccccCCCCccEEEcCCCccCCCC-CCcCCCCcccccccccCCc-----cc----------cccCCCcccEEEcCCCcc
Q 042092           88 IPPSFCNLTQLMHLDLSSNILSGHI-PSSLSNLEQLREKKLTCSI-----SS----------CIFELVNLTKVSLSSNNL  151 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~~~~-~~~~~~l~~L~~~~l~~~~-----~~----------~~~~~~~L~~L~l~~n~~  151 (179)
                        +.+..+++|+++++++|.+.... ...+..+++|+.+.+.++.     +.          .+..+|+|+.||  +..+
T Consensus       109 --~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I  184 (198)
T d1m9la_         109 --SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             --HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGG
T ss_pred             --ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccC
Confidence              34778899999999999997321 1457888889887776531     11          145688999987  4445


Q ss_pred             CC
Q 042092          152 SS  153 (179)
Q Consensus       152 ~~  153 (179)
                      +.
T Consensus       185 ~~  186 (198)
T d1m9la_         185 DV  186 (198)
T ss_dssp             TT
T ss_pred             CH
Confidence            43

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.4e-12  Score=83.72  Aligned_cols=88  Identities=17%  Similarity=0.053  Sum_probs=71.7

Q ss_pred             hcccCceeeeccccc-CCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCC
Q 042092            9 ARNCAFMNRLLHYSC-LSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      +..++++.|++++|. ++..-+           ..|..+++|+.|++++|.++ ...+.+|..+++|++|++++|+++..
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~-----------~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~l   95 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLEL-----------RDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESL   95 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECG-----------GGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred             cCccccCeeecCCCccccccCc-----------hhhccccccCcceeeccccC-CcccccccccccccceeccCCCCccc
Confidence            456788999997664 764334           67888999999999999998 56688899999999999999999944


Q ss_pred             CCccccCCCCccEEEcCCCccC
Q 042092           88 IPPSFCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        88 ~~~~l~~l~~L~~l~l~~n~l~  109 (179)
                      .+..+ ....++++++++|.+.
T Consensus        96 ~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          96 SWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSTTT-CSCCCCEEECCSSCCC
T ss_pred             Chhhh-ccccccccccCCCccc
Confidence            44444 4457999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2e-12  Score=94.62  Aligned_cols=84  Identities=23%  Similarity=0.154  Sum_probs=52.9

Q ss_pred             ccCceeeecccccCCCC-CCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccC-CCCCCC
Q 042092           11 NCAFMNRLLHYSCLSNS-FPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHY-NFRGSI   88 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~   88 (179)
                      ...|++||++++.++.. +.           ..+..+++|++|++++|.++ ......+..+++|+.|+++++ .+++..
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~-----------~l~~~c~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~Ls~c~~itd~~  112 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLH-----------GILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFA  112 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHH-----------HHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred             CCCCCEEECCCCccCHHHHH-----------HHHHhCCCcccccccccCCC-cHHHHHHhcCCCCcCccccccccccccc
Confidence            45678888887776532 23           34566778888888888775 344455667778888888775 344211


Q ss_pred             -CccccCCCCccEEEcCCC
Q 042092           89 -PPSFCNLTQLMHLDLSSN  106 (179)
Q Consensus        89 -~~~l~~l~~L~~l~l~~n  106 (179)
                       ......+++|++++++++
T Consensus       113 l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2         113 LQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             HHHHHHHCTTCCEEECCCC
T ss_pred             cchhhHHHHhccccccccc
Confidence             111234677777777775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.2e-12  Score=92.36  Aligned_cols=154  Identities=20%  Similarity=0.172  Sum_probs=98.2

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCc-cccCCcccccccCCCCccEEEeccCC-CCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGN-DFNYSKISYGFSQFRSLTILNLRHYN-FRG   86 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~~~-l~~   86 (179)
                      ...++|++|+++++.+.+...           ..+..+++|++|++++| .+++......+..+++|+.|+++++. +++
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~-----------~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~  136 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIV-----------NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  136 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHH-----------HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             HhCCCcccccccccCCCcHHH-----------HHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccccc
Confidence            446789999999998876665           56778889999999986 45522233344578899999998863 332


Q ss_pred             C-CCccccC-CCCccEEEcCCC--ccCCC-CCCcCCCCcccccccccC------CccccccCCCcccEEEcCCC-ccCCc
Q 042092           87 S-IPPSFCN-LTQLMHLDLSSN--ILSGH-IPSSLSNLEQLREKKLTC------SISSCIFELVNLTKVSLSSN-NLSSN  154 (179)
Q Consensus        87 ~-~~~~l~~-l~~L~~l~l~~n--~l~~~-~~~~~~~l~~L~~~~l~~------~~~~~~~~~~~L~~L~l~~n-~~~~~  154 (179)
                      . ....+.. .+.|+.++++++  .+.+. +......+++|+.+.+.+      .....+.+++.|++|++++| .+++.
T Consensus       137 ~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence            1 1112222 367888888764  23321 122233456666655542      34455667788888888885 56654


Q ss_pred             hhhHhhcCCCCCcEEEccCC
Q 042092          155 VELYMFTKLKSLEVLDLSYN  174 (179)
Q Consensus       155 ~~~~~~~~l~~L~~L~l~~n  174 (179)
                      ....+.+ +++|+.|+++++
T Consensus       217 ~l~~L~~-~~~L~~L~l~~~  235 (284)
T d2astb2         217 TLLELGE-IPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGG-CTTCCEEECTTS
T ss_pred             HHHHHhc-CCCCCEEeeeCC
Confidence            4444444 788888888776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.99  E-value=5.8e-09  Score=77.00  Aligned_cols=86  Identities=26%  Similarity=0.234  Sum_probs=45.0

Q ss_pred             CceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCccc
Q 042092           13 AFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPPSF   92 (179)
Q Consensus        13 ~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l   92 (179)
                      ++++||++++.++ .+|           +.   .++|++|++++|.++  .+|..   ..+|+.|++++|.++ .++.. 
T Consensus        39 ~l~~LdLs~~~L~-~lp-----------~~---~~~L~~L~Ls~N~l~--~lp~~---~~~L~~L~l~~n~l~-~l~~l-   96 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLP-----------EL---PPHLESLVASCNSLT--ELPEL---PQSLKSLLVDNNNLK-ALSDL-   96 (353)
T ss_dssp             TCSEEECTTSCCS-CCC-----------SC---CTTCSEEECCSSCCS--SCCCC---CTTCCEEECCSSCCS-CCCSC-
T ss_pred             CCCEEEeCCCCCC-CCC-----------CC---CCCCCEEECCCCCCc--ccccc---hhhhhhhhhhhcccc-hhhhh-
Confidence            5677888888776 566           32   356677777777765  23432   235555555555554 22211 


Q ss_pred             cCCCCccEEEcCCCccCCCCCCcCCCCccccc
Q 042092           93 CNLTQLMHLDLSSNILSGHIPSSLSNLEQLRE  124 (179)
Q Consensus        93 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  124 (179)
                        .+.|++|++++|.+. .+|. ++.+++|+.
T Consensus        97 --p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~  124 (353)
T d1jl5a_          97 --PPLLEYLGVSNNQLE-KLPE-LQNSSFLKI  124 (353)
T ss_dssp             --CTTCCEEECCSSCCS-SCCC-CTTCTTCCE
T ss_pred             --ccccccccccccccc-cccc-hhhhcccee
Confidence              123555555555554 3332 333444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.96  E-value=6.1e-11  Score=88.58  Aligned_cols=16  Identities=6%  Similarity=-0.089  Sum_probs=9.9

Q ss_pred             ccCceeeecccccCCC
Q 042092           11 NCAFMNRLLHYSCLSN   26 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~   26 (179)
                      .++|+.|++++|.++.
T Consensus        92 ~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             CTTCCEEECCSCCCCT
T ss_pred             CCCccccccccccccc
Confidence            4566667776666653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.92  E-value=1.6e-08  Score=74.57  Aligned_cols=120  Identities=18%  Similarity=0.205  Sum_probs=88.0

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcccccccCCCCccEEEeccCCCCCCCCc
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKISYGFSQFRSLTILNLRHYNFRGSIPP   90 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~   90 (179)
                      .++|+.|++++|.++ .+|           ..   +.+|+.|++++|.++  ..+. +  .+.|++|++++|.+. .+|.
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp-----------~~---~~~L~~L~l~~n~l~--~l~~-l--p~~L~~L~L~~n~l~-~lp~  115 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELP-----------EL---PQSLKSLLVDNNNLK--ALSD-L--PPLLEYLGVSNNQLE-KLPE  115 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCC-----------CC---CTTCCEEECCSSCCS--CCCS-C--CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCCEEECCCCCCc-ccc-----------cc---hhhhhhhhhhhcccc--hhhh-h--ccccccccccccccc-cccc
Confidence            368899999999998 677           43   457889999999886  2232 1  146999999999988 4454


Q ss_pred             cccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCC
Q 042092           91 SFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSS  153 (179)
Q Consensus        91 ~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~  153 (179)
                       ++.+++|+++++.++.+. ..+.....+..+............+..++.++.+.+++|.+..
T Consensus       116 -~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         116 -LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             -CTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             -hhhhccceeecccccccc-ccccccccccchhhccccccccccccccccceecccccccccc
Confidence             577899999999999886 4455555555555444444555667777889999999988876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.82  E-value=4.5e-10  Score=83.75  Aligned_cols=169  Identities=17%  Similarity=0.195  Sum_probs=94.1

Q ss_pred             hhcccCceeeecccccCCC----CCCcchhhhheecccchhccccceEEEeeCccccCCc---ccccccCCCCccEEEec
Q 042092            8 CARNCAFMNRLLHYSCLSN----SFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSK---ISYGFSQFRSLTILNLR   80 (179)
Q Consensus         8 ~~~~~~l~~l~l~~n~~~~----~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~l~   80 (179)
                      +...+.|++|++++|.+..    .+......  ..........+.++.+.+++|.++...   +...+..++.|+.++++
T Consensus       117 l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~--~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~  194 (344)
T d2ca6a1         117 LSKHTPLEHLYLHNNGLGPQAGAKIARALQE--LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV  194 (344)
T ss_dssp             HHHCTTCCEEECCSSCCHHHHHHHHHHHHHH--HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred             hcccccchheecccccccccccccccccccc--cccccccccCcccceeecccccccccccccccchhhhhhhhcccccc
Confidence            3456778888888887641    11100000  000001123456677777777664211   12223455677777777


Q ss_pred             cCCCCCC-----CCccccCCCCccEEEcCCCccCCC----CCCcCCCCcccccccccCCc---------cccccC--CCc
Q 042092           81 HYNFRGS-----IPPSFCNLTQLMHLDLSSNILSGH----IPSSLSNLEQLREKKLTCSI---------SSCIFE--LVN  140 (179)
Q Consensus        81 ~~~l~~~-----~~~~l~~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~~~l~~~~---------~~~~~~--~~~  140 (179)
                      +|.++..     +...+..+++|++|++++|.+...    +...+...++|+.+++.+..         ...+..  .+.
T Consensus       195 ~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~  274 (344)
T d2ca6a1         195 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  274 (344)
T ss_dssp             SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             cccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCC
Confidence            7766531     223345566777777777766422    22344455566665554321         112222  357


Q ss_pred             ccEEEcCCCccCCchhhH----hhcCCCCCcEEEccCCcccc
Q 042092          141 LTKVSLSSNNLSSNVELY----MFTKLKSLEVLDLSYNKLSL  178 (179)
Q Consensus       141 L~~L~l~~n~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~  178 (179)
                      |++|++++|.+.......    +..+.++|+.|++++|.+..
T Consensus       275 L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            999999999987643332    33347889999999999864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2e-09  Score=82.15  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=75.2

Q ss_pred             cCceeeecccccCCCC-CCcchhhhheecccchhccccceEEEeeCccccCCc---ccccccCCCCccEEEeccCCCCCC
Q 042092           12 CAFMNRLLHYSCLSNS-FPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSK---ISYGFSQFRSLTILNLRHYNFRGS   87 (179)
Q Consensus        12 ~~l~~l~l~~n~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~l~~~~l~~~   87 (179)
                      ..|+.||++++.+++. +.           ..+..+++++.|++++|.++...   ....+..+++|+.|++++|.+++.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~-----------~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~   70 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWA-----------ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV   70 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHH-----------HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH
T ss_pred             CCCCEEEeeCCcCChHHHH-----------HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH
Confidence            3578889999888752 12           34566788888999999876221   134456788888889888877532


Q ss_pred             ----CCcccc-CCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCcccEEEcCCCccCCc
Q 042092           88 ----IPPSFC-NLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLTKVSLSSNNLSSN  154 (179)
Q Consensus        88 ----~~~~l~-~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  154 (179)
                          +...+. ...+|++|++++|.+++....               .++..+..+++|++|++++|.+.+.
T Consensus        71 ~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~---------------~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          71 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG---------------VLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH---------------HHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEECCCCCccccccc---------------cccchhhccccccccccccccchhh
Confidence                112222 234688888888877532111               1223344567888899988888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.9e-09  Score=81.17  Aligned_cols=160  Identities=19%  Similarity=0.097  Sum_probs=90.9

Q ss_pred             ccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCccc---c-cccCCCCccEEEeccCCCCC
Q 042092           11 NCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKIS---Y-GFSQFRSLTILNLRHYNFRG   86 (179)
Q Consensus        11 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~---~-~~~~l~~L~~L~l~~~~l~~   86 (179)
                      ...++.+++++|.+.....       ......+...+.++.+++++|.+++....   . .......|+.++++++.++.
T Consensus       254 ~~~l~~l~l~~n~i~~~~~-------~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~  326 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGC-------GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA  326 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHH-------HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             ccccccccccccccccccc-------ccccccccccccccccccccccccccccchhhccccccccccccccccccchhh
Confidence            4567777777776653211       00002345567778888888877521111   1 11234578888888887664


Q ss_pred             CCCccc----cCCCCccEEEcCCCccCCC----CCCcCC-CCcccccccccCC---------ccccccCCCcccEEEcCC
Q 042092           87 SIPPSF----CNLTQLMHLDLSSNILSGH----IPSSLS-NLEQLREKKLTCS---------ISSCIFELVNLTKVSLSS  148 (179)
Q Consensus        87 ~~~~~l----~~l~~L~~l~l~~n~l~~~----~~~~~~-~l~~L~~~~l~~~---------~~~~~~~~~~L~~L~l~~  148 (179)
                      .....+    ...++|++|++++|.+.+.    ++..+. ..+.|+.+++++.         +.+.+..+++|++|++++
T Consensus       327 ~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~  406 (460)
T d1z7xw1         327 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN  406 (460)
T ss_dssp             GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred             hhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCC
Confidence            322222    3346788888888887532    222222 2344555555432         222345567888888888


Q ss_pred             CccCCchhhHhh----cCCCCCcEEEccCCccc
Q 042092          149 NNLSSNVELYMF----TKLKSLEVLDLSYNKLS  177 (179)
Q Consensus       149 n~~~~~~~~~~~----~~l~~L~~L~l~~n~l~  177 (179)
                      |.+++.....+.    ..-..|+.|+++.|.+.
T Consensus       407 N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            888764443332    22336888888888765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.4e-09  Score=71.62  Aligned_cols=87  Identities=22%  Similarity=0.170  Sum_probs=56.5

Q ss_pred             cccccCCCCccEEEeccCCCCCCC--CccccCCCCccEEEcCCCccCCCCCCcCCCCcccccccccCCccccccCCCccc
Q 042092           65 SYGFSQFRSLTILNLRHYNFRGSI--PPSFCNLTQLMHLDLSSNILSGHIPSSLSNLEQLREKKLTCSISSCIFELVNLT  142 (179)
Q Consensus        65 ~~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~L~  142 (179)
                      +..+..+++|++|++++|+++...  +..+..+++|+.+++++|.+.. +++ +..                 .....|+
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~-l~~-----------------l~~~~L~  118 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERE-LDK-----------------IKGLKLE  118 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGG-HHH-----------------HTTCCCS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chh-hhh-----------------hhccccc
Confidence            344457888888888888888542  2345667888888999888872 221 100                 0123577


Q ss_pred             EEEcCCCccCCchh------hHhhcCCCCCcEEE
Q 042092          143 KVSLSSNNLSSNVE------LYMFTKLKSLEVLD  170 (179)
Q Consensus       143 ~L~l~~n~~~~~~~------~~~~~~l~~L~~L~  170 (179)
                      ++++++|.+.....      ..+.+.+|+|+.||
T Consensus       119 ~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            88888888875322      23456688888876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=7.1e-08  Score=64.20  Aligned_cols=70  Identities=24%  Similarity=0.113  Sum_probs=45.9

Q ss_pred             chhccccceEEEeeCccccCCc-ccccccCCCCccEEEeccCCCCCCCCccccCCCCccEEEcCCCccCCC
Q 042092           42 SLFFILHSQNLNLCGNDFNYSK-ISYGFSQFRSLTILNLRHYNFRGSIPPSFCNLTQLMHLDLSSNILSGH  111 (179)
Q Consensus        42 ~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~l~l~~n~l~~~  111 (179)
                      ....++.|++|++++|.++.-. ....+..+++|+.|++++|.++...+-.+.....++.+++.+|.+...
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            3456778888888888886211 234456778888888888887744332333445678888888877643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=3.3e-06  Score=56.10  Aligned_cols=43  Identities=16%  Similarity=0.107  Sum_probs=20.1

Q ss_pred             hhccccceEEEeeCccccCC---cccccccCCCCccEEEeccCCCC
Q 042092           43 LFFILHSQNLNLCGNDFNYS---KISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus        43 ~~~l~~L~~L~l~~n~i~~~---~~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      +...+.|++|++++|.++..   .....+...+.|+.|++++|.++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            34445566666666655311   11122333445555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.44  E-value=5e-06  Score=55.03  Aligned_cols=65  Identities=11%  Similarity=0.060  Sum_probs=31.2

Q ss_pred             ccccceEEEeeC-ccccCCc---ccccccCCCCccEEEeccCCCCCCC----CccccCCCCccEEEcCCCccC
Q 042092           45 FILHSQNLNLCG-NDFNYSK---ISYGFSQFRSLTILNLRHYNFRGSI----PPSFCNLTQLMHLDLSSNILS  109 (179)
Q Consensus        45 ~l~~L~~L~l~~-n~i~~~~---~~~~~~~l~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~l~l~~n~l~  109 (179)
                      +.+.|++|++++ +.++...   +...+...++|+.|++++|.++...    ...+....+++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            345555555554 2343111   1223345556666666666554321    112333456666666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.41  E-value=3.1e-05  Score=51.21  Aligned_cols=93  Identities=12%  Similarity=-0.031  Sum_probs=62.7

Q ss_pred             hcccCceeeecccccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCc---ccccccCCCCccEEEeccCCCC
Q 042092            9 ARNCAFMNRLLHYSCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSK---ISYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus         9 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      ..++.|+.|++++|.+.....       ..+...+...+.|++|++++|.++...   +..++...++|+.|++++|.+.
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~-------~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEA-------RGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHH-------TTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             hhCCccceeeccccccchhHH-------HHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            456788899999888763211       001134556788999999999996322   2345677789999999998766


Q ss_pred             CC-------CCccccCCCCccEEEcCCCcc
Q 042092           86 GS-------IPPSFCNLTQLMHLDLSSNIL  108 (179)
Q Consensus        86 ~~-------~~~~l~~l~~L~~l~l~~n~l  108 (179)
                      ..       +...+..-++|+.++++.+..
T Consensus       114 ~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         114 VLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            32       222334468899998877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.48  E-value=0.00013  Score=47.93  Aligned_cols=112  Identities=17%  Similarity=0.100  Sum_probs=69.8

Q ss_pred             cccCceeeeccc-ccCCCCCCcchhhhheecccchhccccceEEEeeCccccCCcc---cccccCCCCccEEEeccCCCC
Q 042092           10 RNCAFMNRLLHY-SCLSNSFPSRKKLLIFALNESLFFILHSQNLNLCGNDFNYSKI---SYGFSQFRSLTILNLRHYNFR   85 (179)
Q Consensus        10 ~~~~l~~l~l~~-n~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~~l~~L~~L~l~~~~l~   85 (179)
                      ..+.|++|++++ +.++...-       ......+...+.|++|++++|.++....   ...+...++++.+++.++.++
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~-------~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTL-------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHH-------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHH-------HHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            468999999987 44542111       1111455677889999999998863222   234566789999999999876


Q ss_pred             CC----CCccccCCCCccEEEc--CCCccCC----CCCCcCCCCccccccccc
Q 042092           86 GS----IPPSFCNLTQLMHLDL--SSNILSG----HIPSSLSNLEQLREKKLT  128 (179)
Q Consensus        86 ~~----~~~~l~~l~~L~~l~l--~~n~l~~----~~~~~~~~l~~L~~~~l~  128 (179)
                      ..    +...+...++++.+++  ++|.+..    .+...+...+.|+.+.+.
T Consensus        88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~  140 (166)
T d1io0a_          88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH  140 (166)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence            33    2234556688887665  4566653    223344455566665544