Citrus Sinensis ID: 042126

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
VAGVPGVTEALFLARQAALAQEKNTNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIMVFS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccHHHccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHcccccHcHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHccccccccHHHHHHHcccHHHHHcccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHcccccEEcccccccHHEEHHHHcccccccccccccccccccccccccccccccEEEccccEEEcccccEEcHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEc
Coil and Loop (DISEMBL)
VAGVPGVTEALFLARQAALAQekntnetpmtyscglcgkgyrsSKALAQHLNSRSHIMraaqgtsneeKEKVIIRSIslrdvnkpppkreanneesedsddeweevgpdevLVSEATnsltnlnvgspadddmeeddddgafeefdpaccfmcdlphdaiENCMVHMhkchgffipdveylkdpkglLTYLGLKvkrdfmclycndrchpfnsLEAVRKHMEAKRhckmhfgdgddeeEAELEEFYdysssymdedgkqlisssdmantvelgggseliitrrtdkgtstktfgsreylryyrrkprpspannVAITAALASRYKsmglatvqTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIMVFS
Flexible Loop (DISEMBL)
VAGVPGVTEALFLARQAALaqekntnetpmtYSCGLCGKGYRSSKALAQHLNSRSHIMraaqgtsneekeKVIIrsislrdvnkpppkreanneesedsddeweEVGPDEVLVseatnsltnlnvgspaddDMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMhfgdgddeeEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELgggseliitrrtdkgtstktfgsreylryyrrkprpspannVAITAALASRYKSmglatvqtrehmVRMKVIKemnrtgveamrtrvgmknnimvfs
Low Complexity Region (SEG)
VAGVPGVTEalflarqaalaqEKNTNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNeesedsddeweeVGPDEVLVSEATNSLTNLNVGSPadddmeeddddgafeefdPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHfgdgddeeeaeleefydySSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIMVFS
Disordered region (IsUnstruct)
*********ALFLARQA************MTYSCGLCGKGY******************************************************************************************************EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHM********************************************************LII***************REYLRYY***********VAITAALASRYKSMGLATVQTREHMVRMKVIKEM**********************
Disordered Region (DISOPRED)
VAGVPGVTEALF*********************CGLCGK*************************************************************DEWEEVGPDEVLVSEATNSLTNLNVGSPADDDMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSYMD*******************GGSELIITRR*************************************************************************TRVGMKNNIM***
Disordered Region (DISEMBL)
VAGVPGVTEALFLARQAALAQEKNTNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRA*********EKVIIRSISLRDVN***********************GPDEVLVSEATNSLTNLNVGSPA*********DGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIMVFS
Disordered Region (DISPRO)
**GVPGVTEALFLARQAALAQEKNTNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQGTSNE****************************************************************************EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSY*********************GGSELIITRRTDKGTSTKTFGSREYLRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIMVFS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VAGVPGVTEALFLARQAALAQEKNTNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIMVFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q91VY9	476	Zinc finger protein 622 O	yes	no	0.593	0.460	0.334	2e-25
Q969S3	477	Zinc finger protein 622 O	yes	no	0.550	0.425	0.345	1e-23
Q7TM96	386	Zinc finger protein 622 O	no	no	0.276	0.264	0.476	1e-20
Q90Y35	405	Zinc finger protein 622 O	yes	no	0.327	0.298	0.418	6e-20
O59811	463	Zinc finger protein C550.	yes	no	0.682	0.544	0.259	4e-19
P38344	393	Pre-60S factor REI1 OS=Sa	yes	no	0.260	0.244	0.401	6e-15
Q06709	432	Zinc finger protein REH1	no	no	0.547	0.467	0.28	9e-11

>sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 123/245 (50%), Gaps = 26/245 (10%)

Query: 134 EEDDDDGAFEEFDPAC------CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGL 187
           ++D +D A EE  P        C  C     ++   + HM K H FFIPD+EYL D KGL
Sbjct: 231 DQDAEDAAAEESPPLGAIPITDCLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGL 290

Query: 188 LTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYD 247
           + YLG KV    +CL+CN++   F S EAV+ HM  K HCK+ F DGD     E  +FYD
Sbjct: 291 IKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYD 347

Query: 248 YSSSYMDEDGKQLISSSDMANTVEL----GGGSELIITRRTDKGTSTKTFGSREYLRYYR 303
           + SSY D    Q  +  +  +T ++        ELI+        S    G R  +RYY+
Sbjct: 348 FRSSYPDYKEGQDPAELEALSTDKILECDDETMELIL-------PSGARVGHRSLMRYYK 400

Query: 304 RK---PRP-SPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRV 359
           ++   PR  + A N      +  +Y+++G     T   ++R + ++ + R   + M  ++
Sbjct: 401 QRFGLPRAVTVARNQKAVGRVLQQYRALGWMG-STGAALMRERDMQYVQRMKSKWM-LKI 458

Query: 360 GMKNN 364
           GMKNN
Sbjct: 459 GMKNN 463

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.
Mus musculus (taxid: 10090)

>sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 20/223 (8%)

Query: 150 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 209
           C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct: 254 CLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGK 313

Query: 210 PFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSYMD-EDGKQLISSSDMAN 268
            F S EAV+ HM  K HCK+ F DGD     E  +FYD+ SSY D ++G+    + ++ +
Sbjct: 314 SFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRSSYPDHKEGEDPNKAEELPS 370

Query: 269 TVEL---GGGSELIITRRTDKGTSTKTFGSREYLRYYRRKPRPSPANNVA----ITAALA 321
              L       ELI+        S    G R  +RYY+++   S A  VA        + 
Sbjct: 371 EKNLEYDDETMELIL-------PSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVGRVL 423

Query: 322 SRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 364
            +Y+++G  T  T   ++R + ++ + R   + M  + GMKNN
Sbjct: 424 QQYRALGW-TGSTGAALMRERDMQYVQRMKSKWM-LKTGMKNN 464

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.

Homo sapiens (taxid: 9606)

>sp|Q7TM96|ZN622_RAT Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=2 SV=2

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 150 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 209
           C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct: 247 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 306

Query: 210 PFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSYMD 254
            F S EAV+ HM  K HCK+ F DGD     E  +FYD+ SSY D
Sbjct: 307 SFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRSSYPD 348

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.

Rattus norvegicus (taxid: 10116)

>sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 69/129 (53%), Gaps = 8/129 (6%)

Query: 150 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 209
           C  C      +   + HM K H FFIPD+EYL D +GL+ YLG K+    +C++CN++  
Sbjct: 246 CLFCSHHSRTLMKNVAHMTKVHSFFIPDIEYLVDLRGLIKYLGEKIGVGKICIWCNEKGK 305

Query: 210 PFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANT 269
            F S EAV+ HM  K HCK+ F DGD     E  +FYD+ SSY D    Q     DM   
Sbjct: 306 SFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRSSYPDHKEGQ-----DMEVP 357

Query: 270 VELGGGSEL 278
            EL    EL
Sbjct: 358 AELPSDREL 366

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.

Gallus gallus (taxid: 9031)

>sp|O59811|YJVF_SCHPO Zinc finger protein C550.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 33/285 (11%)

Query: 1   VAGVPGVTEALFLARQAALAQEKNTNETPMTY--SCGLCGKGYRSSKALAQHLNSRSHIM 58
           VA +P ++  +F  +  ++ ++    +    +  +C +C K + S  A + H+ S+ H  
Sbjct: 37  VASLPPLSAEVFAGKILSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRD 96

Query: 59  RAAQGTSNEEKEKVI---IRSISLRDVNKPPPKREANNEESED----------------- 98
             ++   N   +K+      SI+   ++   P  ++  EE ED                 
Sbjct: 97  NLSKFQRNSRIKKLQSEDASSIASSTLSMGEPVVDSEIEEEEDLASQLTSRAISLSNLSL 156

Query: 99  ----SDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDMEEDDDDGAFEEFDPACCFMCD 154
               S+    E+       +EA+ S  +L    P  +++E +    + +   P  C  C 
Sbjct: 157 HGRESEPSKTELATSIPQSNEASKS--HLFTQEPTPEEIEAELARRSSQRLSPRDCLFCA 214

Query: 155 LPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSL 214
               + + C  HM   H  +IP+ EYL D   L  YL  K+   F CL CN     F SL
Sbjct: 215 ASFSSFDTCKKHMKASHSLYIPEREYLVDEPSLFDYLAEKISIGFTCLTCN---REFKSL 271

Query: 215 EAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSYMDEDGKQ 259
           EAVR HM+ K H  + +   D  E+ EL +FYD+++SY D   KQ
Sbjct: 272 EAVRAHMQQKGHTSIAYDTED--EQLELSDFYDFTTSYPDYAVKQ 314

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38344|REI1_YEAST Pre-60S factor REI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REI1 PE=1 SV=3

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 11/107 (10%)

Query: 150 CFMCDLPHDA----IENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCN 205
           C  C+  H+     +E  + HM + HGF+IP+ +YL D  GL+ Y+  K+    +C+ CN
Sbjct: 164 CLFCE--HNKHFKDVEENLEHMFRTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCN 221

Query: 206 DRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSY 252
              +   +L AVR+HM AKRHCK+ +   D  E  E+ EFYD++SSY
Sbjct: 222 ---YQGRTLTAVRQHMLAKRHCKIPYESED--ERLEISEFYDFTSSY 263

Pre-60S-associated cytoplasmic factor invoved in the dissociation and recycling of other late pre-60S factors like ARX1, TIF6 and ALB1 before newly synthesized large ribosomal subunits enter translation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q06709|REH1_YEAST Zinc finger protein REH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REH1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 105/250 (42%), Gaps = 48/250 (19%)

Query: 132 DMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYL 191
           D+ +   D   E+     C  C   +  +E  + HM   HG FIP+  YL D  GLL +L
Sbjct: 170 DIADKPSDKENEKITITECIYCGKDNKEVERNVKHMFSEHGLFIPERSYLIDLNGLLEFL 229

Query: 192 GLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDY--- 248
              +  D  CL CN      + LE++R HM +KRHC++ +     EE      FYD+   
Sbjct: 230 IKMIVIDHNCLCCN---FHGSGLESIRAHMASKRHCRLPY--ETKEERQLFAPFYDFTYD 284

Query: 249 ------------------SSSYM----DEDGK---QLISSSDMAN----TVELG-GGSEL 278
                             SS Y     +EDG+    L+SS +  N    TV +   G EL
Sbjct: 285 DHSISKNLQNDRAITSKLSSVYGAKNDEEDGEVDITLVSSENDINANYTTVSIDESGLEL 344

Query: 279 IITRRTDKGTSTKTFGSREYLRYYRRK--PRPSPANNVAITAALASRYKSMGLATVQTRE 336
            +        +    G R   RYYR+    +P+P N    T   A R    G+   Q ++
Sbjct: 345 TL-------PTGARLGHRAGQRYYRQNLPSQPNP-NESRRTITAADRRMVSGVTEKQYKK 396

Query: 337 HMVRMKVIKE 346
            M +M+ +++
Sbjct: 397 GMKKMQQLEK 406

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
225429787	411	PREDICTED: zinc finger protein 622 [Viti	0.983	0.883	0.710	1e-145
302398699	405	C2H2L domain class transcription factor	0.972	0.886	0.747	1e-140
255574095	407	transcription factor, putative [Ricinus	0.978	0.886	0.728	1e-140
296081767	376	unnamed protein product [Vitis vinifera]	0.891	0.875	0.666	1e-138
356563786	407	PREDICTED: zinc finger protein 622-like	0.978	0.886	0.701	1e-137
356539178	407	PREDICTED: zinc finger protein 622-like	0.978	0.886	0.701	1e-135
388507466	410	unknown [Lotus japonicus]	0.986	0.887	0.684	1e-135
388508652	410	unknown [Lotus japonicus]	0.986	0.887	0.682	1e-134
356563788	407	PREDICTED: zinc finger protein 622-like	0.978	0.886	0.698	1e-134
356539180	407	PREDICTED: zinc finger protein 622-like	0.981	0.889	0.681	1e-127

>gi|225429787|ref|XP_002282746.1| PREDICTED: zinc finger protein 622 [Vitis vinifera]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/370 (71%), Positives = 308/370 (83%), Gaps = 7/370 (1%)

Query: 1   VAGVPGVTEALFLARQAALAQEKN-TNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           +AGVPGVTEAL+LARQ++LA+EKN  NETPM YSC LCGKGYRSSKAL QHL SRSHI+R
Sbjct: 36  IAGVPGVTEALYLARQSSLAEEKNRLNETPMLYSCSLCGKGYRSSKALGQHLKSRSHILR 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
           A+Q  S++++E  II+ ++ R  NKPPP+RE  NEESED     EEV PDE LV EAT S
Sbjct: 96  ASQRASHQDEETTIIKPLTHRTANKPPPQREPVNEESEDEW---EEVNPDEDLVGEATES 152

Query: 120 LTNLNVGSPADDDMEEDDDDGA-FE-EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPD 177
           +T +NV   A +D  ++ DD   FE + DP CCFMCD   + IE C+VHMHK HGFFIPD
Sbjct: 153 ITQMNVNEHASNDDMDESDDDDDFEIKLDPTCCFMCDQEQNTIERCIVHMHKQHGFFIPD 212

Query: 178 VEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDE 237
           VEYLKDPKGLLTYLGLKV RDFMCLYCND CHPFNSLEAVRKHM AK HCK+H+GDG D+
Sbjct: 213 VEYLKDPKGLLTYLGLKVTRDFMCLYCNDGCHPFNSLEAVRKHMVAKSHCKVHYGDGGDD 272

Query: 238 EEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELG-GGSELIITRRTDKGTSTKTFGSR 296
           EEAELEEFYDYSSSY+D D KQL++S DM NTVELG GGSELIITRRTD G STK+ GSR
Sbjct: 273 EEAELEEFYDYSSSYVDVDEKQLVASGDMNNTVELGCGGSELIITRRTDGGISTKSLGSR 332

Query: 297 EYLRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 356
           E+LRYYR+KPRPSP N  AITAALASRY+SMGLATVQ+RE +VRMKV+K+MN++GVEAMR
Sbjct: 333 EFLRYYRQKPRPSPMNGAAITAALASRYRSMGLATVQSREQIVRMKVMKQMNKSGVEAMR 392

Query: 357 TRVGMKNNIM 366
           +++GMK+N++
Sbjct: 393 SKIGMKSNVI 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398699|gb|ADL36644.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/368 (74%), Positives = 317/368 (86%), Gaps = 9/368 (2%)

Query: 1   VAGVPGVTEALFLARQAALAQEKNT-NETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           +AGVPGVTEALF+ARQAALAQEKN+ +ETPM YSCGLCGKGYRSSKA A+HL SRSHI+R
Sbjct: 36  IAGVPGVTEALFIARQAALAQEKNSLSETPMLYSCGLCGKGYRSSKAHAEHLKSRSHILR 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
           A+QG S E++EK IIR +  R VNK PPKREAN+EE+E+S+DEW EV PDE L      S
Sbjct: 96  ASQGAS-EQEEKAIIRPLPPRVVNKAPPKREANDEETEESEDEWVEVDPDEDL----AKS 150

Query: 120 LTNLNVGSPADDDMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE 179
           LT++NV   A ++  ++DD   FEE DP CCFMCDL HD +E+CMVHMHK HGFFIPD+E
Sbjct: 151 LTDMNVDEHASEEDMDEDD--DFEELDPTCCFMCDLEHDTLESCMVHMHKHHGFFIPDIE 208

Query: 180 YLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEE 239
           YLKDPKGLLTYLGLKVKRDFMCLYCNDR HPFNSLEAVRKHM AK HCK+H+GD DDEEE
Sbjct: 209 YLKDPKGLLTYLGLKVKRDFMCLYCNDRRHPFNSLEAVRKHMVAKSHCKVHYGDDDDEEE 268

Query: 240 AELEEFYDYSSSYMDEDGKQLISSSDMANTVELG-GGSELIITRRTDKGTSTKTFGSREY 298
           AELEEFYDYSSSY+DE GKQL+ S DMAN+VELG GGSELIITRR+D G S+KT GSREY
Sbjct: 269 AELEEFYDYSSSYVDEAGKQLVVSGDMANSVELGSGGSELIITRRSDDGISSKTLGSREY 328

Query: 299 LRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTR 358
           LRYYR+K RPSPAN  AITAALASRY+SMGLATVQ++E MVRMKV+KEM R+GVEAMR++
Sbjct: 329 LRYYRQKLRPSPANGAAITAALASRYRSMGLATVQSKERMVRMKVLKEMRRSGVEAMRSK 388

Query: 359 VGMKNNIM 366
           +GMK+N++
Sbjct: 389 MGMKSNVI 396

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574095|ref|XP_002527963.1| transcription factor, putative [Ricinus communis] gi|223532589|gb|EEF34375.1| transcription factor, putative [Ricinus communis]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/368 (72%), Positives = 309/368 (83%), Gaps = 7/368 (1%)

Query: 1   VAGVPGVTEALFLARQAALAQEKN-TNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           VAGVPGVTEALFLARQ+ L QEK+ ++ETPM YSC LCGKGYRSSKA AQHL SRSHI+R
Sbjct: 36  VAGVPGVTEALFLARQSVLVQEKDKSSETPMLYSCVLCGKGYRSSKAHAQHLKSRSHILR 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
           A+QG +NE ++  +I+ +  R +NK PP+R   +EESEDS DEWEEV P+E LV +A+ S
Sbjct: 96  ASQG-ANENEDTAVIKPLPRRIMNKRPPQRAVEDEESEDSGDEWEEVDPEEELVGDASKS 154

Query: 120 LTNLNVGSPADDDMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE 179
           LT L+V    +   E+ D+    E  DP+CCFMCD  H  +E+CMVHMHK HGFFIPDVE
Sbjct: 155 LTGLSVN---ETSDEDMDEGEDDELLDPSCCFMCDQQHGNVESCMVHMHKQHGFFIPDVE 211

Query: 180 YLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEE 239
           YLKDPK LLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHM AK HCK+H+GDGDDEEE
Sbjct: 212 YLKDPKSLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMAAKGHCKVHYGDGDDEEE 271

Query: 240 AELEEFYDYSSSYMDEDGKQLISSSDMANTVEL-GGGSELIITRRTDKGTSTKTFGSREY 298
           AELEEFYDYSSSY+DE+GKQLI S DMANTVEL GGGSELIIT R+D   S+KT GSRE+
Sbjct: 272 AELEEFYDYSSSYVDENGKQLIVSGDMANTVELGGGGSELIITTRSDSKISSKTLGSREF 331

Query: 299 LRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTR 358
           LRYYR+KPRPSPAN VAITAALASRY+SMGLATVQ+RE MVRMKV+KEMNR+  EAMRT+
Sbjct: 332 LRYYRQKPRPSPANGVAITAALASRYRSMGLATVQSREQMVRMKVMKEMNRSS-EAMRTK 390

Query: 359 VGMKNNIM 366
           +GMK+NI+
Sbjct: 391 IGMKSNII 398

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081767|emb|CBI20772.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/369 (66%), Positives = 287/369 (77%), Gaps = 40/369 (10%)

Query: 1   VAGVPGVTEALFLARQAALAQEKN-TNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           +AGVPGVTEAL+LARQ++LA+EKN  NETPM YSC LCGKGYRSSKAL QHL SRSHI+R
Sbjct: 36  IAGVPGVTEALYLARQSSLAEEKNRLNETPMLYSCSLCGKGYRSSKALGQHLKSRSHILR 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
           A+Q  S++++E  II+ ++ R  NKPPP+RE  NEESED DD+                 
Sbjct: 96  ASQRASHQDEETTIIKPLTHRTANKPPPQREPVNEESEDDDDDD---------------- 139

Query: 120 LTNLNVGSPADDDMEEDDDDGAFE-EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV 178
                                 FE + DP CCFMCD   + IE C+VHMHK HGFFIPDV
Sbjct: 140 ---------------------DFEIKLDPTCCFMCDQEQNTIERCIVHMHKQHGFFIPDV 178

Query: 179 EYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEE 238
           EYLKDPKGLLTYLGLKV RDFMCLYCND CHPFNSLEAVRKHM AK HCK+H+GDG D+E
Sbjct: 179 EYLKDPKGLLTYLGLKVTRDFMCLYCNDGCHPFNSLEAVRKHMVAKSHCKVHYGDGGDDE 238

Query: 239 EAELEEFYDYSSSYMDEDGKQLISSSDMANTVELG-GGSELIITRRTDKGTSTKTFGSRE 297
           EAELEEFYDYSSSY+D D KQL++S DM NTVELG GGSELIITRRTD G STK+ GSRE
Sbjct: 239 EAELEEFYDYSSSYVDVDEKQLVASGDMNNTVELGCGGSELIITRRTDGGISTKSLGSRE 298

Query: 298 YLRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRT 357
           +LRYYR+KPRPSP N  AITAALASRY+SMGLATVQ+RE +VRMKV+K+MN++GVEAMR+
Sbjct: 299 FLRYYRQKPRPSPMNGAAITAALASRYRSMGLATVQSREQIVRMKVMKQMNKSGVEAMRS 358

Query: 358 RVGMKNNIM 366
           ++GMK+N++
Sbjct: 359 KIGMKSNVI 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563786|ref|XP_003550140.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/368 (70%), Positives = 311/368 (84%), Gaps = 7/368 (1%)

Query: 1   VAGVPGVTEALFLARQAALAQEKNT-NETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           VAGVPGVTEALFLARQ+ LAQEKN   ETPM Y+CGLCGK Y+SSKA A+HL SR H+MR
Sbjct: 36  VAGVPGVTEALFLARQSVLAQEKNKLGETPMLYTCGLCGKDYKSSKAHAEHLKSRGHMMR 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
           A++GTS+ + EK I++ +  R VN+PPP+RE +N E+E+S+DEWEEV P+E LV  A  S
Sbjct: 96  ASEGTSHAD-EKAIVKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEEDLVDGAAKS 154

Query: 120 LTNLNVGSPADD-DMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV 178
           LT+LNV    ++ DME DDD   FEE DP+CCFMCD  H  IENCMVHMHK HGFFIPDV
Sbjct: 155 LTDLNVNEHGENVDMEVDDD---FEELDPSCCFMCDQEHKTIENCMVHMHKHHGFFIPDV 211

Query: 179 EYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEE 238
           EYLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHMEAK HCK+H+GDG D+E
Sbjct: 212 EYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGVDDE 271

Query: 239 EAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREY 298
           E ELEEFYDYSSSY+D+ GKQL++S D +N VEL GGSELII+R++   +STKT GSRE+
Sbjct: 272 EVELEEFYDYSSSYVDDQGKQLVASCDASNNVELVGGSELIISRKSGDRSSTKTLGSREF 331

Query: 299 LRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTR 358
           LRYYR+KPRPS A N+AITAALASRY+SMGL T+Q+RE +VRMKV+KEMNR+GV+ MRT+
Sbjct: 332 LRYYRQKPRPSLA-NMAITAALASRYRSMGLTTIQSREKIVRMKVLKEMNRSGVDNMRTK 390

Query: 359 VGMKNNIM 366
           + MK+N++
Sbjct: 391 MAMKSNVI 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539178|ref|XP_003538077.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/368 (70%), Positives = 313/368 (85%), Gaps = 7/368 (1%)

Query: 1   VAGVPGVTEALFLARQAALAQEKNT-NETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           VAGVPGVTEALFLARQ+ LAQEKN   ETPM YSCGLCGK Y+SSKA A+HL SR H+M+
Sbjct: 36  VAGVPGVTEALFLARQSVLAQEKNKLGETPMLYSCGLCGKDYKSSKAHAEHLKSRGHMMQ 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
           A++GTS+ + EK I++ +  R VN+PPP+RE +N E+E+S+DEWEEV P+E LV  A  S
Sbjct: 96  ASEGTSHAD-EKAIVKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEEDLVDGAAKS 154

Query: 120 LTNLNVGSPADD-DMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV 178
           LT+LNV    ++ DME DDD   FEE DP+CCFMCD  H +IENCMVHMHK HGFFIPDV
Sbjct: 155 LTDLNVNEHGENVDMEVDDD---FEELDPSCCFMCDQEHKSIENCMVHMHKHHGFFIPDV 211

Query: 179 EYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEE 238
           EYLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHMEAK HCK+H+GDGDD+E
Sbjct: 212 EYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDDE 271

Query: 239 EAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREY 298
           E EL+EFYDYSSSY+D+ GKQL++S D +N VEL GGSELIIT ++ + +STKT GSRE+
Sbjct: 272 EVELDEFYDYSSSYVDDQGKQLVASCDASNNVELVGGSELIITTKSGERSSTKTLGSREF 331

Query: 299 LRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTR 358
           LRYYR+KPRPS A N+AITAALASRY+SMGL T+Q+RE +VRMKV+KEMNR+GV+ MRT+
Sbjct: 332 LRYYRQKPRPSLA-NMAITAALASRYRSMGLTTIQSREKIVRMKVLKEMNRSGVDNMRTK 390

Query: 359 VGMKNNIM 366
           + MK+N++
Sbjct: 391 MAMKSNVI 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507466|gb|AFK41799.1| unknown [Lotus japonicus]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/368 (68%), Positives = 305/368 (82%), Gaps = 4/368 (1%)

Query: 1   VAGVPGVTEALFLARQAALAQEKN-TNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           VAGVPGVTEALFLARQAALA+EK+  NET M YSCGLCGKGY+SSKA A+HL SR H+MR
Sbjct: 36  VAGVPGVTEALFLARQAALAEEKDKANETAMLYSCGLCGKGYKSSKAHAEHLKSRGHLMR 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
            ++GTS  + EK I++ +  R  N+PPP+RE    E  +S+DEWEEV P++ LV +A  S
Sbjct: 96  VSEGTSQSD-EKAIVKPLPQRSANRPPPRREVQVSEDGESEDEWEEVDPEDDLVGDAAKS 154

Query: 120 LTNLNVGSPADDDMEEDDDDGAFEEFD-PACCFMCDLPHDAIENCMVHMHKCHGFFIPDV 178
           LT +NV   AD+D + D+DD    E   PACCFMCD  H+ IENCMVHMHK HGFFIPD+
Sbjct: 155 LTEMNVDEDADNDDDMDEDDDDTFEELDPACCFMCDQGHNTIENCMVHMHKHHGFFIPDI 214

Query: 179 EYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEE 238
           EYLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHM AK HCK+HFGDGDDEE
Sbjct: 215 EYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMVAKSHCKVHFGDGDDEE 274

Query: 239 EAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREY 298
           E ELE+FYDYSSSY DE G+QL+ S D  N +EL GGSEL+I+R++   TST+T GSRE+
Sbjct: 275 EVELEDFYDYSSSYADEQGEQLVVSGDTTNNIELFGGSELVISRKSGDKTSTRTLGSREF 334

Query: 299 LRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTR 358
           LRYYR+KPRPSPA N+AITAALASRY+SMGLATVQ+RE +VRMKV+K+M++TGVE MR++
Sbjct: 335 LRYYRQKPRPSPA-NMAITAALASRYRSMGLATVQSREQIVRMKVLKQMSKTGVENMRSK 393

Query: 359 VGMKNNIM 366
           +GMK+N++
Sbjct: 394 MGMKSNVI 401

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508652|gb|AFK42392.1| unknown [Lotus japonicus]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/368 (68%), Positives = 305/368 (82%), Gaps = 4/368 (1%)

Query: 1   VAGVPGVTEALFLARQAALAQEKN-TNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           VAGVPGVTEALFLARQAALA+EK+  NET M YSCGLCGKGY+SSKA A+HL SR H+MR
Sbjct: 36  VAGVPGVTEALFLARQAALAEEKDKANETAMLYSCGLCGKGYKSSKAHAEHLKSRGHLMR 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
            ++GTS  + EK I++ +  R  N+PPP+RE    E  +S+DEWEEV P++ LV +A  S
Sbjct: 96  VSEGTSQSD-EKAIVKPLPQRSANRPPPRREVQVSEDGESEDEWEEVDPEDDLVGDAAKS 154

Query: 120 LTNLNVGSPADDDMEEDDDDGAFEEFD-PACCFMCDLPHDAIENCMVHMHKCHGFFIPDV 178
           LT +NV   AD+D + D+DD    E   PACCFMCD  H+ IENCMVHMHK HGFFIPD+
Sbjct: 155 LTEMNVDEDADNDDDMDEDDDDTFEELDPACCFMCDQGHNTIENCMVHMHKHHGFFIPDI 214

Query: 179 EYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEE 238
           EYLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHM AK HCK+HFGDGDDEE
Sbjct: 215 EYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMVAKSHCKVHFGDGDDEE 274

Query: 239 EAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREY 298
           E ELE+FYDYSSSY+DE G+QL+ S D  N +EL GG EL+I+R++   TST+T GSRE+
Sbjct: 275 EVELEDFYDYSSSYVDEQGEQLVVSGDTTNNIELFGGFELVISRKSGDKTSTRTLGSREF 334

Query: 299 LRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTR 358
           LRYYR+KPRPSPA N+AITAALASRY+SMGLATVQ+RE +VRMKV+K+M++TGVE MR++
Sbjct: 335 LRYYRQKPRPSPA-NMAITAALASRYRSMGLATVQSREQIVRMKVLKQMSKTGVENMRSK 393

Query: 359 VGMKNNIM 366
           +GMK+N++
Sbjct: 394 MGMKSNVI 401

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563788|ref|XP_003550141.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/368 (69%), Positives = 311/368 (84%), Gaps = 7/368 (1%)

Query: 1   VAGVPGVTEALFLARQAALAQEKNT-NETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           VAGVPGVTEALFLARQ+ LAQEKN   ETPM Y+CGLCGK Y+SSKA A+HL SR H+MR
Sbjct: 36  VAGVPGVTEALFLARQSVLAQEKNKLGETPMLYTCGLCGKDYKSSKAHAEHLKSRGHMMR 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
           A++GTS+ + EK I++ +  R VN+PPPKRE +N E+E+S+DEWEEV P+E LV  A  S
Sbjct: 96  ASEGTSHAD-EKAIVKPLPQRVVNRPPPKREVDNSENEESEDEWEEVDPEEDLVDGAAKS 154

Query: 120 LTNLNVGSPADD-DMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV 178
           LT+LNV    ++ DME DDD   FEE DP+CCFMCD  H  IE+CMVHMHK HGFFIPDV
Sbjct: 155 LTDLNVNEHGENVDMEVDDD---FEELDPSCCFMCDQEHKTIEDCMVHMHKHHGFFIPDV 211

Query: 179 EYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEE 238
           EYLKDPKGLLTYLGLKVK+D+MCLYCNDRC+PF+SLEAVRKHMEAK HCK+H+GDGDD+E
Sbjct: 212 EYLKDPKGLLTYLGLKVKKDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDDE 271

Query: 239 EAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREY 298
           E EL+EFYDYSSSY+D+ GKQL++S D +N VEL GGSELIIT ++ +  STKT GSRE+
Sbjct: 272 EVELDEFYDYSSSYVDDQGKQLVASCDASNNVELVGGSELIITTKSGERASTKTLGSREF 331

Query: 299 LRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTR 358
           LRYYR+KPRPS A N+AITAALASRY+SMGL T+Q+RE +VRMKV+KEMNR+GV+ MRT+
Sbjct: 332 LRYYRQKPRPSLA-NMAITAALASRYRSMGLTTIQSREKIVRMKVLKEMNRSGVDNMRTK 390

Query: 359 VGMKNNIM 366
           + MK+N++
Sbjct: 391 MAMKSNVI 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539180|ref|XP_003538078.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/367 (68%), Positives = 305/367 (83%), Gaps = 5/367 (1%)

Query: 1   VAGVPGVTEALFLARQAALAQEKNT-NETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
           VAGVPGVTEALFLARQ+ LAQEKN   ETPM Y CGLCGK Y+SSKA A+HL SR H+MR
Sbjct: 36  VAGVPGVTEALFLARQSVLAQEKNKLGETPMLYCCGLCGKDYKSSKAHAEHLKSRGHMMR 95

Query: 60  AAQGTSNEEKEKVIIRSISLRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNS 119
           A++GTS  + EK I++ +  R VN+PPP+RE +N E+E+S+DEWEEV P+E LV  A  S
Sbjct: 96  ASEGTSQAD-EKAIVKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEEDLVDGAAKS 154

Query: 120 LTNLNVGSPADDDMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE 179
           LT+LNV    ++   E+DDD    +  P+CCFMCD  H  IE+CMVHMHK HGFFIPDVE
Sbjct: 155 LTDLNVNEHGENVDMEEDDDFEELD--PSCCFMCDQEHKTIEDCMVHMHKHHGFFIPDVE 212

Query: 180 YLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEE 239
           YLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHMEAK HCK+H+GDGDD+EE
Sbjct: 213 YLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDDEE 272

Query: 240 AELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSREYL 299
            EL+EFYDYSSSY+D+ GKQL++S D +N VEL GGSELIIT ++   +STKT GSRE+L
Sbjct: 273 VELDEFYDYSSSYVDDQGKQLVASCDASNNVELAGGSELIITTKSGDRSSTKTLGSREFL 332

Query: 300 RYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRV 359
           RYYR+KPRPS A N+AITAALASRY+S+GL T+Q+RE +VRMKV+KEMNR+GV+ MRT++
Sbjct: 333 RYYRQKPRPSLA-NMAITAALASRYRSLGLTTIQSREKIVRMKVLKEMNRSGVDNMRTKM 391

Query: 360 GMKNNIM 366
            MK+N++
Sbjct: 392 AMKSNVI 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2128161	405	AT4G31420 [Arabidopsis thalian	0.967	0.881	0.505	4.3e-93
TAIR|locus:2061087	395	FZF [Arabidopsis thaliana (tax	0.588	0.549	0.590	6.3e-89
FB|FBgn0030878	409	CG6769 [Drosophila melanogaste	0.544	0.491	0.333	3e-26
UNIPROTKB|F1LQ57	475	Fam134b "Protein FAM134B" [Rat	0.558	0.433	0.309	3.5e-25
UNIPROTKB|F1N194	470	ZNF622 "Uncharacterized protei	0.558	0.438	0.309	5.8e-25
UNIPROTKB|F1SRM2	424	ZNF622 "Uncharacterized protei	0.547	0.476	0.314	2.7e-24
UNIPROTKB|E2R1D3	458	ZNF622 "Uncharacterized protei	0.558	0.449	0.3	4.6e-24
UNIPROTKB|D4A2K8	435	D4A2K8 "Uncharacterized protei	0.544	0.462	0.318	1.3e-23
MGI|MGI:1289282	476	Zfp622 "zinc finger protein 62	0.552	0.428	0.306	3.9e-23
UNIPROTKB|Q969S3	477	ZNF622 "Zinc finger protein 62	0.558	0.431	0.3	4.4e-23

TAIR|locus:2128161 AT4G31420 [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 187/370 (50%), Positives = 240/370 (64%)

Query:     1 VAGVPGVTEXXXXXXXXXXXXEKN-TNETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 59
             VAGVPGVTE            EKN +NE PM Y+C +C KGYRSSKA  QHL SRSH++R
Sbjct:    36 VAGVPGVTEALFEARQSALAQEKNKSNEAPMLYTCAICAKGYRSSKAHEQHLQSRSHVLR 95

Query:    60 AAQGTS-NEEKEKVIIRSISLRDVNKPPPKREANNXXXXXXXXXXXXVGPDEVLVSE-AT 117
              +QGTS N E++  IIR +        P + +               V  DE L +E A+
Sbjct:    96 VSQGTSINGEEDIAIIRQL--------PRRVQHRGSIDDDSEDEWVEVDSDEELAAEEAS 147

Query:   118 NSLTNLNVGSPXXXXXXXXXXXXXXXXXXPACCFMCDLPHDAIENCMVHMHKCHGFFIPD 177
             +SL+ LNV                     P CC MCD  H  +E+CM+HMHK HGFFIPD
Sbjct:   148 DSLSKLNVNESGSAEDMDDDGDADKYELDPTCCLMCDKKHKTLESCMLHMHKHHGFFIPD 207

Query:   178 VEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHXXXXXXX 237
             +EYLKDP+GLLTYLGLKVKRDFMCLYCN+ C PF+SLEAVRKHMEAK HCK+H       
Sbjct:   208 IEYLKDPEGLLTYLGLKVKRDFMCLYCNELCRPFSSLEAVRKHMEAKSHCKLHYGDGDDE 267

Query:   238 XXXXXXXXXX-XSSSYMDEDGKQLISSSDMANTVELGGGSELIITRRTDKGTSTKTFGSR 296
                         SSSY+DE GKQ++ S +  NTVEL GGSEL+IT +++  T++KT GSR
Sbjct:   268 EDAELEEFYDYSSSSYVDEAGKQIVVSGETDNTVELVGGSELLITEKSENTTTSKTLGSR 327

Query:   297 EYLRYYRRKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 356
             E++RYYR+KPRP+  ++  I A+L+SRYKS+GL TV ++E  +RMKV KEM++ G E MR
Sbjct:   328 EFMRYYRQKPRPTSQDSNQIIASLSSRYKSLGLKTVPSKEETLRMKVRKEMSKRG-ETMR 386

Query:   357 TRVGMKNNIM 366
             T++G+K+N++
Sbjct:   387 TKIGVKSNVI 396

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2061087 FZF [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
 Identities = 130/220 (59%), Positives = 164/220 (74%)

Query:   147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCND 206
             PACC MCD  H  IE CMVHMHK HGFFIPD+EYLKDPKG LTYLGLKVKRDF+CLYCN+
Sbjct:   170 PACCLMCDKKHKTIEKCMVHMHKFHGFFIPDIEYLKDPKGFLTYLGLKVKRDFVCLYCNE 229

Query:   207 RCHPFNSLEAVRKHMEAKRHCKMHXXXXXXXXXXXXXXXXXXSSSYMDEDGKQLISSSDM 266
              CHPF+SLEAVRKHM+AK HCK+H                  SSSY++ D  Q++ S + 
Sbjct:   230 LCHPFSSLEAVRKHMDAKGHCKVHYGDGGDEEDAELEEFYDYSSSYVNGDENQMVVSGES 289

Query:   267 ANTVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRKPRPSPANNVAITAALASRYKS 326
              NTVEL GGSEL+IT+RTD   +++T GSRE++RYY++KP PS   +  I  +L SRYK 
Sbjct:   290 VNTVELFGGSELVITKRTDNKVTSRTLGSREFMRYYKQKPAPSSQKH--IVNSLTSRYKM 347

Query:   327 MGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIM 366
             MGLATVQ++E +VRMKV++EMN+ G ++   R+GMK+N++
Sbjct:   348 MGLATVQSKEAIVRMKVMREMNKRGAKSS-VRLGMKSNVI 386

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0051604 "protein maturation" evidence=RCA

FB|FBgn0030878 CG6769 [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
 Identities = 74/222 (33%), Positives = 103/222 (46%)

Query:   149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRC 208
             C F      D +EN + HM   H FFIPD EY  D +GLL YLG KV   F+CL+CNDR 
Sbjct:   191 CLFCTHASEDLVEN-LKHMSVAHSFFIPDTEYCTDIEGLLYYLGEKVANYFICLFCNDRG 249

Query:   209 HPFNSLEAVRKHMEAKRHCKMHXXXXXXXXXXXXXXXXXXSSSYMDEDGKQLISSSDMAN 268
               F SL+AVRKHM  K HC+M                   SSSY D +    I    + +
Sbjct:   250 KTFYSLDAVRKHMIDKGHCQM---LHEGVALAEYAEYYDYSSSYPDNNEGMDIDEEVVPD 306

Query:   269 TVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRKPRPSPANNVAITAA------LAS 322
              ++ G   +L++        S    G R  LRYY+++ RP  A  V I  +      + S
Sbjct:   307 LLD-GDEYQLVLP-------SGAVIGHRSLLRYYKQRLRPERA--VVIKKSDRKLHRVLS 356

Query:   323 RYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 364
              Y+++G    Q      + + I  M R   +  + ++G K N
Sbjct:   357 EYRALGWTQTQQLSAARKARDIHLMKRVQSK-WQMKLGCKAN 397

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LQ57 Fam134b "Protein FAM134B" [Rattus norvegicus (taxid:10116)]

 Score = 243 (90.6 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
 Identities = 68/220 (30%), Positives = 105/220 (47%)

Query:   150 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 209
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   252 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 311

Query:   210 PFNSLEAVRKHMEAKRHCKMHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSDMAN 268
              F S EAV+ HM  K HCK+                    SSY D ++G+      D+++
Sbjct:   312 SFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFR---SSYPDYKEGQDPAEIEDLSS 368

Query:   269 TVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRK---PRP-SPANNVAITAALASRY 324
                L    E   T      +  +  G R  +RYY+++   PR  + A N      +  +Y
Sbjct:   369 EKILECDDE---TMELILPSGARV-GHRSLMRYYKQRFGLPRAVTVARNQKAVGRVLQQY 424

Query:   325 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 364
             +++G  T  T   ++R + ++ + R   + M  + GMKNN
Sbjct:   425 RALGW-TGSTGAALMRERDMQYVQRMKSKWM-LKTGMKNN 462

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IEA

GO:0033674 "positive regulation of kinase activity" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

UNIPROTKB|F1N194 ZNF622 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 5.8e-25, Sum P(2) = 5.8e-25
 Identities = 68/220 (30%), Positives = 105/220 (47%)

Query:   150 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 209
             C  C     ++   + HM K H FFIPDVEYL D KGL+ YLG KV    +CL+CN+R  
Sbjct:   247 CLFCPHHSSSLTKNVAHMTKVHSFFIPDVEYLSDLKGLIKYLGEKVGVGKICLWCNERGK 306

Query:   210 PFNSLEAVRKHMEAKRHCKMHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSDMAN 268
              F S EAV+ HM  + HCK+                    SSY D ++G+    + ++ +
Sbjct:   307 SFYSTEAVQAHMNDRSHCKLFTDGDALLEFADFYDFR---SSYPDHKEGEDHDETEELPS 363

Query:   269 TVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRK---PRP-SPANNVAITAALASRY 324
                L    E   T      +  +  G R  +RYY+++    R  + A N      +  +Y
Sbjct:   364 EKTLDYDDE---TMELILPSGARV-GHRSLMRYYKQRFGLSRAVAVAKNRKAVGRVLQQY 419

Query:   325 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 364
             +++G  T  T   +VR + ++ + R   + M  ++GMKNN
Sbjct:   420 RALGW-TGSTGAALVRQRDMQYVQRMKSKWM-LKMGMKNN 457

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0033674 "positive regulation of kinase activity" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SRM2 ZNF622 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 234 (87.4 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
 Identities = 71/226 (31%), Positives = 111/226 (49%)

Query:   150 CFMCDLPHDA---IENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCND 206
             C  C  PH +   ++N + HM K H FF+PDVEYL D KGL+ YLG KV    +CL+CN+
Sbjct:   199 CLFC--PHHSSSLVKN-VAHMTKVHSFFLPDVEYLSDLKGLIKYLGEKVGVGKICLWCNE 255

Query:   207 RCHPFNSLEAVRKHMEAKRHCKMHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSD 265
             +   F S EAV+ HM  + HCK+                    SSY D ++G+    +  
Sbjct:   256 KGKSFYSTEAVQAHMHDRSHCKLFTDGDALLEFADFYDFR---SSYPDHKEGEDPDETEA 312

Query:   266 MANTVELGGGS---ELIITRRTDKGTSTKTFGSREYLRYYRRK---PRP-SPANNVAITA 318
             + +   LG      ELI+   T  G      G R  +RYY+++    R  + A N     
Sbjct:   313 LPSEKPLGYDDDTMELILPSET--GARV---GHRSLMRYYKQRFGLSRAVAVARNQKAVG 367

Query:   319 ALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 364
              +  +Y+++G  T  T   +VR + ++ + R   + +  ++G+KNN
Sbjct:   368 RVLQQYRALGW-TGSTGAALVRQRDMQYVQRMKSKWL-LKMGVKNN 411

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0033674 "positive regulation of kinase activity" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2R1D3 ZNF622 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
 Identities = 66/220 (30%), Positives = 98/220 (44%)

Query:   150 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 209
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   238 CLFCPHHSSSLMKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 297

Query:   210 PFNSLEAVRKHMEAKRHCKMHXXXXXXXXXXXXXXXXXXSSSYMDEDGKQLISSSDMANT 269
              F S EAV+ HM  K HCK+                      Y + D            T
Sbjct:   298 SFYSTEAVQAHMNDKSHCKLFTDGNAALEFADFYDFRSSYPDYKEGDHPDETEELPSEKT 357

Query:   270 VELGGGS-ELIITRRTDKGTSTKTFGSREYLRYYRRK---PRP-SPANNVAITAALASRY 324
             VE    + ELI+        S    G R  +RYY+++    R  + A N      +  +Y
Sbjct:   358 VEYDDETMELILP-------SGARVGHRSLMRYYKQRFGLSRAVAVAKNQKAVGRILQQY 410

Query:   325 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 364
             +++G  T  T   ++  + ++ + R   + M  + GMKNN
Sbjct:   411 RALGW-TGSTGAALLHERDMQYVQRMKSKWM-LKTGMKNN 448

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|D4A2K8 D4A2K8 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 70/220 (31%), Positives = 105/220 (47%)

Query:   150 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 209
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   217 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGAGKICLWCNEKGK 276

Query:   210 PFNSLEAVRKHMEAKRHCKMHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSDMAN 268
              F S EAV+ HM  K HCK+                    SSY D ++G+      D++ 
Sbjct:   277 SFYSTEAVQAHMNDKSHCKLFTDGDAVLEFADFYDFR---SSYPDYKEGQDPAEIEDLSL 333

Query:   269 TVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRK---PRP-SPANNVAITAALASRY 324
               +     ELII        S    G R  +RYY+++   PR  + A N      +  +Y
Sbjct:   334 ECD-DETMELIIP-------SGARVGHRSLMRYYKQRFGLPRAVTVARNQKAVGRVLQQY 385

Query:   325 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 364
             +++G  T  T   ++R + ++ + R     ++T  GMKNN
Sbjct:   386 RALGW-TGSTGAALMRERDMQYVQRKSKWMLKT--GMKNN 422

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1289282 Zfp622 "zinc finger protein 622" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
 Identities = 68/222 (30%), Positives = 106/222 (47%)

Query:   150 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 209
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   253 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 312

Query:   210 PFNSLEAVRKHMEAKRHCKMHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLIS-SSDMA 267
              F S EAV+ HM  K HCK+                      Y + +D  +L + S+D  
Sbjct:   313 SFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDYKEGQDPAELEALSTD-- 370

Query:   268 NTVELGGGS-ELIITRRTDKGTSTKTFGSREYLRYYRRK---PRP-SPANNVAITAALAS 322
               +E    + ELI+        S    G R  +RYY+++   PR  + A N      +  
Sbjct:   371 KILECDDETMELILP-------SGARVGHRSLMRYYKQRFGLPRAVTVARNQKAVGRVLQ 423

Query:   323 RYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 364
             +Y+++G     T   ++R + ++ + R   + M  ++GMKNN
Sbjct:   424 QYRALGWMG-STGAALMRERDMQYVQRMKSKWM-LKIGMKNN 463

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=ISO

GO:0033674 "positive regulation of kinase activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=ISO

GO:0046330 "positive regulation of JNK cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q969S3 ZNF622 "Zinc finger protein 622" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
 Identities = 66/220 (30%), Positives = 104/220 (47%)

Query:   150 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 209
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   254 CLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGK 313

Query:   210 PFNSLEAVRKHMEAKRHCKMHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSDMAN 268
              F S EAV+ HM  K HCK+                    SSY D ++G+    + ++ +
Sbjct:   314 SFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFR---SSYPDHKEGEDPNKAEELPS 370

Query:   269 TVELGGGSELIITRRTDKGTSTKTFGSREYLRYYRRK---PRP-SPANNVAITAALASRY 324
                L    E   T      +  +  G R  +RYY+++    R  + A N      +  +Y
Sbjct:   371 EKNLEYDDE---TMELILPSGARV-GHRSLMRYYKQRFGLSRAVAVAKNRKAVGRVLQQY 426

Query:   325 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 364
             +++G  T  T   ++R + ++ + R   + M  + GMKNN
Sbjct:   427 RALGW-TGSTGAALMRERDMQYVQRMKSKWM-LKTGMKNN 464

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046330 "positive regulation of JNK cascade" evidence=IMP

GO:0043410 "positive regulation of MAPK cascade" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0033674 "positive regulation of kinase activity" evidence=IDA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032337001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (411 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019318001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (245 aa)				•	•		•		0.648
	GSVIVG00026673001	SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (504 aa)				•	•		•		0.477
	GSVIVG00026600001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa)				•			•		0.473
	GSVIVG00001542001	SubName- Full=Chromosome chr11 scaffold_118, whole genome shotgun sequence; (207 aa)				•					0.470
	GSVIVG00007482001	SubName- Full=Chromosome undetermined scaffold_191, whole genome shotgun sequence; (425 aa)				•	•		•		0.464
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•			•		0.450
	GSVIVG00027646001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa)				•			•		0.442
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•					0.441
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•					0.441
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•					0.439

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
pfam12756	100	pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 cop	4e-40

>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies)

 Score =  137 bits (346), Expect = 4e-40
 Identities = 50/104 (48%), Positives = 65/104 (62%), Gaps = 5/104 (4%)

Query: 149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRC 208
            C  C+   D +E  + HM K HGFFIP+ EYL D +GLL YL  K+     CLYC  + 
Sbjct: 1   DCLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIHEGNECLYCGKQ- 59

Query: 209 HPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELEEFYDYSSSY 252
             F SLEA+R+HM  K HCK+ +    +EE+ E+ EFYD+SSSY
Sbjct: 60  --FKSLEALRQHMRDKGHCKIPY--ETEEEKDEIAEFYDFSSSY 99

This family contains two copies of a C2H2-like zinc finger domain. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	100.0
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	99.8
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	99.7
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	99.49
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.5
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.34
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.2
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	97.71
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	97.25
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.91
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	96.5
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.41
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.3
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.81
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	95.63
PTZ00448	373	hypothetical protein; Provisional	95.56
smart00355	26	ZnF_C2H2 zinc finger.	95.47
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	95.29
PLN02748	468	tRNA dimethylallyltransferase	95.05
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.47
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.93
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.91
PHA00733	128	hypothetical protein	93.87
PF13821	55	DUF4187: Domain of unknown function (DUF4187)	93.14
PHA02768	55	hypothetical protein; Provisional	92.96
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	92.91
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	92.12
PHA00616	44	hypothetical protein	91.68
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	91.64
KOG3608	467	consensus Zn finger proteins [General function pre	91.16
KOG3608	467	consensus Zn finger proteins [General function pre	90.55
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	90.33
PHA00733	128	hypothetical protein	90.24
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	89.8
KOG4727	193	consensus U1-like Zn-finger protein [General funct	89.33
KOG3576	267	consensus Ovo and related transcription factors [T	89.21
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	88.89
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	88.73
PHA02768	55	hypothetical protein; Provisional	86.27
PHA00616	44	hypothetical protein	85.23
PHA00732	79	hypothetical protein	83.56
smart00355	26	ZnF_C2H2 zinc finger.	83.28
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	82.68
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	82.6
PHA00732	79	hypothetical protein	82.44
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	81.55
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	81.17
KOG3032	264	consensus Uncharacterized conserved protein [Funct	80.98

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=1.9e-81  Score=613.37  Aligned_cols=336  Identities=37%  Similarity=0.590  Sum_probs=254.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhcc--CCCCCccccccccCccCCHHHHHHHhhcHHHHHHHhcCCCchhhhhhhhhccc
Q 042126            1 VAGVPGVTEALFLARQAALAQEKNT--NETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQGTSNEEKEKVIIRSIS   78 (369)
Q Consensus         1 VA~LPPVt~e~F~~k~~~~a~~~~~--~~~~~~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~~~~~~~~~~~~i~~~~   78 (369)
                      ||+|||||+|+|++|+++.+.++..  .++.+.+.|.+|+|+|.|++|+.+||+||+|+.+..+..+..+.+.+.+..++
T Consensus        36 VA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~  115 (390)
T KOG2785|consen   36 VASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLP  115 (390)
T ss_pred             hhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhccccccchhhhhcc
Confidence            8999999999999998887554443  45778889999999999999999999999999998876554344444444443


Q ss_pred             ccCCCCCCCCCcCCCCCCCCCcccccccCCchhhhhhhcccccccCCCCCCCCCCCccCCCCCCCCCCCCccccCCCCCC
Q 042126           79 LRDVNKPPPKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDMEEDDDDGAFEEFDPACCFMCDLPHD  158 (369)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~d~e~eweev~~~e~~~~~~~~s~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~CLFC~~~~~  158 (369)
                      .+.+.   + ..    ...+++..|-|++.++....+.       ..+  +..+|++++.. ...+..|+.||||++.+.
T Consensus       116 ~~~p~---~-l~----~~~e~e~~~~E~~~~~d~~~e~-------~~d--d~~Edi~~d~~-~e~e~~Pt~CLfC~~~~k  177 (390)
T KOG2785|consen  116 SRRPS---N-LQ----NKGESELKWYEVDSDEDSSEEE-------EED--DEEEDIEEDGD-DEDELIPTDCLFCDKKSK  177 (390)
T ss_pred             ccCcc---c-cc----cCCCcccchhhcccccccchhh-------ccC--cchhhhhhccc-hhcccCCcceeecCCCcc
Confidence            22210   0 00    0112455565555442110000       000  11111111111 122345599999999999


Q ss_pred             CHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCCccccCCCCCchH
Q 042126          159 AIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEE  238 (369)
Q Consensus       159 s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK~Hcki~~~~~~~~~  238 (369)
                      +++.|+.||++.||||||+++||+|+.|||.||++||..+++|||||..|+.|+|++|||+||.+||||||+| ++  |+
T Consensus       178 ~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~HCkl~y-d~--ee  254 (390)
T KOG2785|consen  178 SLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKGHCKLPY-DG--EE  254 (390)
T ss_pred             cHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhccCcccCC-Ch--HH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 54  99


Q ss_pred             HHHhhhhcccCCCCcCcccccccccCCCCCceee--CC-CeeEEEeccCCCCCCcceeeeccccccccCCCCCCCCch--
Q 042126          239 EAELEEFYDYSSSYMDEDGKQLISSSDMANTVEL--GG-GSELIITRRTDKGTSTKTFGSREYLRYYRRKPRPSPANN--  313 (369)
Q Consensus       239 ~~e~~~FYDf~~sy~d~~~~~~~~~~~~~~~~~~--~~-g~eL~L~~~~~~~psG~~iGhR~~~ryyrQ~~~~~~~~~--  313 (369)
                      ++||++||||++||+|..+.+.+...++.++..+  .+ .+||+|       |||++||||+|+|||||||+|+....  
T Consensus       255 ~~El~efYDfsssY~d~~~~~~~~~~e~~~~~~l~~g~~~~el~l-------psga~vGhRsl~RYykQ~l~p~~~~~~~  327 (390)
T KOG2785|consen  255 RLELAEFYDFSSSYPDIAENQDPDSAEEDPTDELEGGDELYELTL-------PSGARVGHRSLMRYYKQNLRPSSAVVRL  327 (390)
T ss_pred             HhhhhhhhcCcccccCcccCCCCcchhcCCcccccccceeeeeec-------ccccccccHHHHHHHhhcCCCcchHHHH
Confidence            9999999999999999766554443443333344  11 278999       99999999999999999999998653  


Q ss_pred             --HHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 042126          314 --VAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNI  365 (369)
Q Consensus       314 --~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvg~k~N~  365 (369)
                        ..++.+.+..|+++||++.+...+.++.+.++.++|.+ .+|.++||+|+|.
T Consensus       328 ~~r~~~~~~~~~~~a~~~t~~~~~~~k~~~~~~k~v~R~~-~r~~~~~g~k~n~  380 (390)
T KOG2785|consen  328 VSRRALSRVKRFYPALGWTGTTGVRAKMQARDMKFVERGR-RRFALRVGMKNNY  380 (390)
T ss_pred             HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhcchhhH
Confidence              33344566778899999988776666667777777765 7799999999994

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=99.80  E-value=8.6e-21  Score=153.23  Aligned_cols=99  Identities=45%  Similarity=0.834  Sum_probs=28.0

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  228 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK~Hck  228 (369)
                      .|+||+..++++..++.||...|+|.||+..+|+++.+|++|++.+|...+.|++|+   +.|.|..+|+.||+.++|++
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~---~~f~s~~~l~~Hm~~~~H~~   77 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCN---KTFRSREALQEHMRSKHHKK   77 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS----EESSHHHHHHHHHHTTTTC
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccC---CCCcCHHHHHHHHcCccCCC
Confidence            499999999999999999999999999999999999999999999999889999998   88999999999999999999


Q ss_pred             ccCCCCCchHHHHhhhhccc-CCCC
Q 042126          229 MHFGDGDDEEEAELEEFYDY-SSSY  252 (369)
Q Consensus       229 i~~~~~~~~~~~e~~~FYDf-~~sy  252 (369)
                      +.++.+  ....++..|||| +.+|
T Consensus        78 ~~~~~~--~~~~~~~~~y~~~~~~~  100 (100)
T PF12756_consen   78 RNSESE--ESWEEFEKFYDFWSNDY  100 (100)
T ss_dssp             -S-----------------------
T ss_pred             cccccc--cccccccccccccccCC
Confidence            988643  668899999999 6554

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=99.70  E-value=2.6e-18  Score=167.17  Aligned_cols=159  Identities=21%  Similarity=0.373  Sum_probs=117.0

Q ss_pred             cccccccCccCCHHHHHHHhhcHHHHH-HHhcCCCchhhhhh-hhhcccccCCCCCCCCCcC--C-CCCCCCCccccccc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSHIM-RAAQGTSNEEKEKV-IIRSISLRDVNKPPPKREA--N-NEESEDSDDEWEEV  106 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkHk~-~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~--~-~~~~~d~e~eweev  106 (369)
                      +.|.+|.|.|..+|+++.||+.|.|++ +..+.    .++.. +|..+....+ ..+...+.  . .+...+.+++|++|
T Consensus       196 ~~CLyCekifrdkntLkeHMrkK~HrrinPknr----eYDkfyiINY~ev~ks-~t~~~~e~dret~~d~~E~D~~wsDw  270 (423)
T KOG2482|consen  196 LRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNR----EYDKFYIINYLEVGKS-WTIVHSEDDRETNEDINETDDTWSDW  270 (423)
T ss_pred             heeeeeccccCCcHHHHHHHHhccCcccCCCcc----ccceEEEEeHhhcCCc-cchhhhhhhhhhhccccccccchhhh
Confidence            579999999999999999999999999 44333    55543 5543221000 00000010  0 11223456778877


Q ss_pred             CCchhhhhhhcccccccCCCCCCCCCCCccCCCCCCCCCCCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcc--c---c
Q 042126          107 GPDEVLVSEATNSLTNLNVGSPADDDMEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE--Y---L  181 (369)
Q Consensus       107 ~~~e~~~~~~~~s~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~--y---l  181 (369)
                      .+++.+                                -....||||.+...++...++||..+|-|+|-...  |   .
T Consensus       271 ~ed~a~--------------------------------a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~  318 (423)
T KOG2482|consen  271 NEDDAE--------------------------------ALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNF  318 (423)
T ss_pred             hcCCCC--------------------------------ccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccch
Confidence            654311                                02268999999999999999999999999999884  4   3


Q ss_pred             cCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCCccccC
Q 042126          182 KDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHF  231 (369)
Q Consensus       182 vd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK~Hcki~~  231 (369)
                      |....||||||++++ ...|..|.   -+|.+..+++.||..-.|--|..
T Consensus       319 YqrvrviNyiRkq~~-~~~c~~cd---~~F~~e~~l~~hm~e~k~l~i~p  364 (423)
T KOG2482|consen  319 YQRVRVINYIRKQKK-KSRCAECD---LSFWKEPGLLIHMVEDKHLSILP  364 (423)
T ss_pred             hhhhhHHHHHHHHhh-cccccccc---ccccCcchhhhhccccccccccC
Confidence            899999999999988 56999998   68999999999999988877764

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=99.49  E-value=2.7e-14  Score=139.43  Aligned_cols=95  Identities=24%  Similarity=0.463  Sum_probs=87.7

Q ss_pred             CCCCccccCCCCC-CCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          145 FDPACCFMCDLPH-DAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       145 ~~~~~CLFC~~~~-~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +-..+||||+... ....+.+.||+..|||.|..++.||....||..|.+++. .++||||.   |.|+..-.|+.||+.
T Consensus       142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~-r~~CLyCe---kifrdkntLkeHMrk  217 (423)
T KOG2482|consen  142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLE-RLRCLYCE---KIFRDKNTLKEHMRK  217 (423)
T ss_pred             eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHh-hheeeeec---cccCCcHHHHHHHHh
Confidence            3567899999987 589999999999999999999999999999999999987 57999998   999999999999999


Q ss_pred             CCCccccCCCCCchHHHHhhhhcccC
Q 042126          224 KRHCKMHFGDGDDEEEAELEEFYDYS  249 (369)
Q Consensus       224 K~Hcki~~~~~~~~~~~e~~~FYDf~  249 (369)
                      |+|.+|+..      ..||+.||-..
T Consensus       218 K~HrrinPk------nreYDkfyiIN  237 (423)
T KOG2482|consen  218 KRHRRINPK------NREYDKFYIIN  237 (423)
T ss_pred             ccCcccCCC------ccccceEEEEe
Confidence            999999886      46999999764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.50  E-value=4.7e-08  Score=62.45  Aligned_cols=26  Identities=35%  Similarity=0.732  Sum_probs=25.0

Q ss_pred             cccccccCccCCHHHHHHHhhcHHHH
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSHI   57 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkHk   57 (369)
                      |.|.+|+|.|.++++|++||+|++||
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            57999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.34  E-value=2.5e-07  Score=57.66  Aligned_cols=25  Identities=40%  Similarity=0.929  Sum_probs=24.0

Q ss_pred             cccccccCccCCHHHHHHHhhcHHH
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSH   56 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkH   56 (369)
                      |.|.+|+++|+|.++|++|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            5799999999999999999999999

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.20  E-value=1.4e-06  Score=58.27  Aligned_cols=32  Identities=19%  Similarity=0.519  Sum_probs=29.0

Q ss_pred             ccccccccCccCCHHHHHHHhhcHHHHHHHhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      .|.|.+|++.|.+..+|++|++|++|+.++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            36799999999999999999999999998653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=1.6e-05  Score=81.43  Aligned_cols=31  Identities=35%  Similarity=0.640  Sum_probs=28.5

Q ss_pred             cccccccCccCCHHHHHHHhhcHHHHHHHhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      +.|.+|+|+|.|++|+.||.+||||+++++.
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~e  323 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAE  323 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHH
Confidence            5699999999999999999999999997653

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=97.25  E-value=0.00026  Score=71.16  Aligned_cols=33  Identities=15%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             ccccccccCccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      .|+|..|...|.+....+.|++|.||++|.+..
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRk   35 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRK   35 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhH
Confidence            578999999999999999999999999987754

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.91  E-value=0.00051  Score=41.62  Aligned_cols=22  Identities=36%  Similarity=0.958  Sum_probs=20.7

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      |.|..|+|.|.+...|+.|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5799999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=96.50  E-value=0.0035  Score=60.88  Aligned_cols=29  Identities=28%  Similarity=0.615  Sum_probs=22.5

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHhCCCccccC
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHF  231 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~dK~Hcki~~  231 (369)
                      +.|-.|+   |.|.+.-.||.||+.-++.| .|
T Consensus       216 F~C~hC~---kAFADRSNLRAHmQTHS~~K-~~  244 (279)
T KOG2462|consen  216 FSCPHCG---KAFADRSNLRAHMQTHSDVK-KH  244 (279)
T ss_pred             ccCCccc---chhcchHHHHHHHHhhcCCc-cc
Confidence            5788887   88888888888888777666 44

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.41  E-value=0.002  Score=38.53  Aligned_cols=22  Identities=41%  Similarity=1.038  Sum_probs=18.4

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      |.|.+|+++|.+..+|+.|++.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            5799999999999999999975

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.30  E-value=0.0022  Score=40.28  Aligned_cols=24  Identities=38%  Similarity=0.750  Sum_probs=21.6

Q ss_pred             ccccccccCccCCHHHHHHHhhcH
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSR   54 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~Sk   54 (369)
                      +|.|..|+++|.+..+|..|+++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            368999999999999999999764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.81  E-value=0.0041  Score=49.65  Aligned_cols=30  Identities=37%  Similarity=0.799  Sum_probs=26.1

Q ss_pred             ccccccccCccCCHHHHHHHhhcHHHHHHH
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSRSHIMRA   60 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~   60 (369)
                      .+.|.+|++.|.|..+++.||+++.|+...
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~   79 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRN   79 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence            478999999999999999999999999853

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.63  E-value=0.01  Score=41.20  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=19.2

Q ss_pred             cccccccCcc--CCHHHHHHHhhcHHHHHHHh
Q 042126           32 YSCGLCGKGY--RSSKALAQHLNSRSHIMRAA   61 (369)
Q Consensus        32 ~~C~~C~K~F--~S~nA~~nHl~SkkHk~~~~   61 (369)
                      |.|.+|++.|  .|...-++|.++.+|+.++.
T Consensus         4 yyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~   35 (38)
T PF06220_consen    4 YYCDYCKKYLTHDSPSIRKQHERGWKHKENVK   35 (38)
T ss_dssp             -B-TTT--B-S--SHHHHHHHT--THHHHHHH
T ss_pred             eecccccceecCCChHHHHHhhccHHHHHHHH
Confidence            6799999999  55578899999999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>PTZ00448 hypothetical protein; Provisional

Probab=95.56  E-value=0.0084  Score=60.50  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=30.3

Q ss_pred             ccccccccCccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      .|.|..|+-.|.+.+.++.|++|.||++|.+..
T Consensus       314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRk  346 (373)
T PTZ00448        314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRN  346 (373)
T ss_pred             CccccccccccCCHHHHHHHhhhhHHHHHHHHH
Confidence            578999999999999999999999999987754

>smart00355 ZnF_C2H2 zinc finger

Probab=95.47  E-value=0.012  Score=35.37  Aligned_cols=21  Identities=43%  Similarity=0.947  Sum_probs=19.7

Q ss_pred             cccccccCccCCHHHHHHHhh
Q 042126           32 YSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      +.|..|+++|.+...+..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            469999999999999999998

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=95.29  E-value=0.0095  Score=51.37  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             CccccccccCccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      ..|+|..|.+.|.+..+++-|.++|.||.|+++.
T Consensus        56 GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l   89 (129)
T KOG3408|consen   56 GQFYCIECARYFIDAKALKTHFKTKVHKRRVKEL   89 (129)
T ss_pred             ceeehhhhhhhhcchHHHHHHHhccHHHHHHHhc
Confidence            3468999999999999999999999999988754

>PLN02748 tRNA dimethylallyltransferase

Probab=95.05  E-value=0.014  Score=61.14  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=30.1

Q ss_pred             CccccccccC-ccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           30 MTYSCGLCGK-GYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        30 ~~~~C~~C~K-~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      ..|.|.+|++ ++..+..|+.|++|++||.++...
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~  451 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRL  451 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHH
Confidence            4578999997 899999999999999999976644

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.47  E-value=0.004  Score=39.51  Aligned_cols=25  Identities=36%  Similarity=0.824  Sum_probs=23.0

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHhCCC
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEAKRH  226 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~dK~H  226 (369)
                      +.|..|+   +.|.+..++++||+.|.|
T Consensus         2 ~~C~~C~---k~f~~~~~~~~H~~sk~H   26 (27)
T PF12171_consen    2 FYCDACD---KYFSSENQLKQHMKSKKH   26 (27)
T ss_dssp             CBBTTTT---BBBSSHHHHHCCTTSHHH
T ss_pred             CCcccCC---CCcCCHHHHHHHHccCCC
Confidence            5799998   999999999999999877

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.93  E-value=0.03  Score=35.07  Aligned_cols=25  Identities=44%  Similarity=0.953  Sum_probs=21.7

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  228 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~dK~Hck  228 (369)
                      +.|..|+   +.|.+..++..||  +.||+
T Consensus         2 ~~C~~C~---~~F~~~~~l~~H~--~~h~~   26 (27)
T PF13912_consen    2 FECDECG---KTFSSLSALREHK--RSHCS   26 (27)
T ss_dssp             EEETTTT---EEESSHHHHHHHH--CTTTT
T ss_pred             CCCCccC---CccCChhHHHHHh--HHhcC
Confidence            4799998   9999999999999  66664

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.91  E-value=0.011  Score=36.30  Aligned_cols=24  Identities=38%  Similarity=0.866  Sum_probs=22.0

Q ss_pred             eeeecCCCCCCCCCHHHHHHHHHhCCC
Q 042126          200 MCLYCNDRCHPFNSLEAVRKHMEAKRH  226 (369)
Q Consensus       200 ~Cl~C~~~~k~F~S~eav~~HM~dK~H  226 (369)
                      .|-.|+   +.|.|...+++||+.+.|
T Consensus         2 ~C~~C~---~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    2 YCDICN---KSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EETTTT---EEESSHHHHHHHHTTHHH
T ss_pred             CCCCCC---CCcCCHHHHHHHHCcCCC
Confidence            688998   899999999999999876

>PHA00733 hypothetical protein

Probab=93.87  E-value=0.088  Score=45.82  Aligned_cols=49  Identities=18%  Similarity=0.425  Sum_probs=38.6

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      ..|-.|+..+.+......||.. |.                       . .+.|-.|+   +.|.....+..||..|
T Consensus        74 y~C~~Cgk~Fss~s~L~~H~r~-h~-----------------------~-~~~C~~Cg---K~F~~~~sL~~H~~~~  122 (128)
T PHA00733         74 YVCPLCLMPFSSSVSLKQHIRY-TE-----------------------H-SKVCPVCG---KEFRNTDSTLDHVCKK  122 (128)
T ss_pred             ccCCCCCCcCCCHHHHHHHHhc-CC-----------------------c-CccCCCCC---CccCCHHHHHHHHHHh
Confidence            4588899999988888888874 21                       0 14888897   8899999999998876

>PF13821 DUF4187: Domain of unknown function (DUF4187)

Probab=93.14  E-value=0.11  Score=38.99  Aligned_cols=31  Identities=23%  Similarity=0.585  Sum_probs=25.3

Q ss_pred             CHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHH
Q 042126          183 DPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRK  219 (369)
Q Consensus       183 d~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~  219 (369)
                      -+..||.|||.+   .+-|+||+   -+|.|.+.+..
T Consensus        15 ~L~~l~~YLR~~---~~YC~~Cg---~~Y~d~~dL~~   45 (55)
T PF13821_consen   15 RLDKLLSYLREE---HNYCFWCG---TKYDDEEDLER   45 (55)
T ss_pred             HHHHHHHHHHhh---CceeeeeC---CccCCHHHHHh
Confidence            467899999998   46999998   67888877753

>PHA02768 hypothetical protein; Provisional

Probab=92.96  E-value=0.059  Score=40.48  Aligned_cols=24  Identities=33%  Similarity=0.791  Sum_probs=22.2

Q ss_pred             ccccccccCccCCHHHHHHHhhcH
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSR   54 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~Sk   54 (369)
                      .|.|..|+|.|....++..|+++.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H   28 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKH   28 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhc
Confidence            478999999999999999999983

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.91  E-value=0.041  Score=33.09  Aligned_cols=22  Identities=27%  Similarity=0.762  Sum_probs=19.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...++.||+.
T Consensus         1 y~C~~C~---~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICG---KSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTT---EEESSHHHHHHHHHH
T ss_pred             CCCCCCC---CccCCHHHHHHHHhH
Confidence            3799998   999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.12  E-value=0.15  Score=37.40  Aligned_cols=28  Identities=29%  Similarity=0.496  Sum_probs=24.2

Q ss_pred             ccccccCccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           33 SCGLCGKGYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        33 ~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      +|..|...|.+   |..|+.|++|+.-+.+.
T Consensus         7 YCE~C~~ky~~---l~~Hi~s~~Hr~FA~~~   34 (49)
T PF07535_consen    7 YCENCRVKYDD---LEEHIQSEKHRKFAEND   34 (49)
T ss_pred             cCccccchhhh---HHHHhCCHHHHHHHcCc
Confidence            49999999986   88999999999976543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PHA00616 hypothetical protein

Probab=91.68  E-value=0.078  Score=38.09  Aligned_cols=22  Identities=41%  Similarity=0.765  Sum_probs=20.5

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      |.|.-|+|.|.....+..|+++
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~   23 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLS   23 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHH
Confidence            6899999999999999999954

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=91.64  E-value=0.1  Score=30.84  Aligned_cols=22  Identities=36%  Similarity=0.822  Sum_probs=17.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|..|+   +.|.+..+++.||..
T Consensus         1 ~~C~~C~---~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICG---KSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS----EESSHHHHHHHHHH
T ss_pred             CCCcCCC---CcCCcHHHHHHHHHh
Confidence            3799998   899999999999975

...

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=91.16  E-value=0.24  Score=50.07  Aligned_cols=64  Identities=19%  Similarity=0.310  Sum_probs=55.0

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhc-CCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHH
Q 042126          146 DPACCFM--CDLPHDAIENCMVHMHKCH-GFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       146 ~~~~CLF--C~~~~~s~e~nl~HM~~~H-~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~  222 (369)
                      +.-.|-|  |.....+......||.+.| ||.-|                     .+.|-+|.   |.|.+=.+|-.|++
T Consensus       318 ~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~---------------------~Y~CH~Cd---r~ft~G~~L~~HL~  373 (467)
T KOG3608|consen  318 TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPI---------------------LYACHCCD---RFFTSGKSLSAHLM  373 (467)
T ss_pred             cceecCCCCCcHHHHHHHHHHHHHHHhccCCCCC---------------------ceeeecch---hhhccchhHHHHHH
Confidence            4457888  9999999999999999999 76533                     24899998   88999999999999


Q ss_pred             hCCCccccCCC
Q 042126          223 AKRHCKMHFGD  233 (369)
Q Consensus       223 dK~Hcki~~~~  233 (369)
                      .|.-.+||++-
T Consensus       374 kkH~f~~PsGh  384 (467)
T KOG3608|consen  374 KKHGFRLPSGH  384 (467)
T ss_pred             HhhcccCCCCC
Confidence            99999999863

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=90.55  E-value=0.29  Score=49.48  Aligned_cols=71  Identities=17%  Similarity=0.280  Sum_probs=53.1

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCc----ccc----cCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHH
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDV----EYL----KDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAV  217 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~----~yl----vd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav  217 (369)
                      -.|..|+...+.....-.||...|+=+=|-.    +|+    .|+.+-+.|=.+-+   +.|-.  |.   -.|++.-.+
T Consensus       264 ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~---y~C~h~~C~---~s~r~~~q~  337 (467)
T KOG3608|consen  264 YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTV---YQCEHPDCH---YSVRTYTQM  337 (467)
T ss_pred             ccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccc---eecCCCCCc---HHHHHHHHH
Confidence            3589999999999999999999999877765    332    35555555444333   47877  87   467899999


Q ss_pred             HHHHHhC
Q 042126          218 RKHMEAK  224 (369)
Q Consensus       218 ~~HM~dK  224 (369)
                      +.||+.-
T Consensus       338 ~~H~~ev  344 (467)
T KOG3608|consen  338 RRHFLEV  344 (467)
T ss_pred             HHHHHHh
Confidence            9999974

>smart00451 ZnF_U1 U1-like zinc finger

Probab=90.33  E-value=0.14  Score=33.79  Aligned_cols=28  Identities=36%  Similarity=0.708  Sum_probs=25.0

Q ss_pred             CceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 042126          198 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  228 (369)
Q Consensus       198 ~~~Cl~C~~~~k~F~S~eav~~HM~dK~Hck  228 (369)
                      .+.|..|+   +.|.+..++++|+..+.|-+
T Consensus         3 ~~~C~~C~---~~~~~~~~~~~H~~gk~H~~   30 (35)
T smart00451        3 GFYCKLCN---VTFTDEISVEAHLKGKKHKK   30 (35)
T ss_pred             CeEccccC---CccCCHHHHHHHHChHHHHH
Confidence            46899999   89999999999999998854

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PHA00733 hypothetical protein

Probab=90.24  E-value=0.42  Score=41.61  Aligned_cols=29  Identities=17%  Similarity=0.419  Sum_probs=25.6

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCC
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFI  175 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~I  175 (369)
                      +..|-.|+..+........||.+.|+.-+
T Consensus        99 ~~~C~~CgK~F~~~~sL~~H~~~~h~~~~  127 (128)
T PHA00733         99 SKVCPVCGKEFRNTDSTLDHVCKKHNICV  127 (128)
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcCccc
Confidence            35899999999999999999999998643

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=89.80  E-value=0.21  Score=36.67  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=23.5

Q ss_pred             cccccccCccCCHHHHHHHhhcHHHHHHHhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      .+|..|...|.   .|..|+.|++|+.-+..
T Consensus         6 GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~~   33 (49)
T smart00586        6 GYCENCREKYD---DLETHLLSEKHRRFAEN   33 (49)
T ss_pred             cccccHhHHHh---hHHHHhccHHHHHHHcC
Confidence            35999999998   57889999999996553

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=89.33  E-value=0.42  Score=43.76  Aligned_cols=59  Identities=19%  Similarity=0.257  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHH---HHHH-Hhhhcc-------CCCCCccccccccCccCCHHHHHHHhhcHHHHHHHh
Q 042126            3 GVPGVTEALFLAR---QAAL-AQEKNT-------NETPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAA   61 (369)
Q Consensus         3 ~LPPVt~e~F~~k---~~~~-a~~~~~-------~~~~~~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~   61 (369)
                      .=|||+.|....|   +..- .-.+..       .+....|+|.+|+-+|...-.|-.|++=|+|..+..
T Consensus        36 ~~~~vqre~L~~rdykvdl~sKLgkt~vitk~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlg  105 (193)
T KOG4727|consen   36 DGPPVQREHLKHRDYKVDLESKLGKTVVITKSTPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLG  105 (193)
T ss_pred             cCCchhHHHHhhhhhhhHhHhhccceeEeccCCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHh
Confidence            4589998887765   1111 111111       134456899999999999999999999999999743

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=89.21  E-value=0.29  Score=46.21  Aligned_cols=63  Identities=21%  Similarity=0.386  Sum_probs=40.7

Q ss_pred             CCCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHH
Q 042126          145 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       145 ~~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~  222 (369)
                      +-|-.|-.|++.+...-..-.|..+.||-           ..-..|-.++-. -++|--|+   -.-...+..-.|..
T Consensus       171 vrpykc~~c~kaftqrcsleshl~kvhgv-----------~~~yaykerr~k-l~vcedcg---~t~~~~e~~~~h~~  233 (267)
T KOG3576|consen  171 VRPYKCSLCEKAFTQRCSLESHLKKVHGV-----------QHQYAYKERRAK-LYVCEDCG---YTSERPEVYYLHLK  233 (267)
T ss_pred             ccccchhhhhHHHHhhccHHHHHHHHcCc-----------hHHHHHHHhhhh-eeeecccC---CCCCChhHHHHHHH
Confidence            45667888888888777777888888884           122345555544 46888886   34445555555554

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.89  E-value=0.45  Score=51.78  Aligned_cols=80  Identities=20%  Similarity=0.394  Sum_probs=60.4

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCc-----cc------ccCHHHHHHHHH-----HHhcCC-ceeeecCCCC
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV-----EY------LKDPKGLLTYLG-----LKVKRD-FMCLYCNDRC  208 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~-----~y------lvd~~gLl~yL~-----~kI~~~-~~Cl~C~~~~  208 (369)
                      .-..|++| ..+.+++..-.||...|+++.-..     .+      +|=...|++.+.     .+...| -+|.+|.   
T Consensus       114 ~~~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~---  189 (669)
T KOG2231|consen  114 NKKECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCH---  189 (669)
T ss_pred             ccCCCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhh---
Confidence            44679999 888999999999999999987432     11      355566777664     455555 6899998   


Q ss_pred             CCCCCHHHHHHHHHh-CCCccc
Q 042126          209 HPFNSLEAVRKHMEA-KRHCKM  229 (369)
Q Consensus       209 k~F~S~eav~~HM~d-K~Hcki  229 (369)
                      ..|-....++.||+- .-+|.+
T Consensus       190 ~~fld~~el~rH~~~~h~~chf  211 (669)
T KOG2231|consen  190 ERFLDDDELYRHLRFDHEFCHF  211 (669)
T ss_pred             hhhccHHHHHHhhccceeheee
Confidence            778999999999984 445544

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=88.73  E-value=0.19  Score=42.69  Aligned_cols=31  Identities=29%  Similarity=0.465  Sum_probs=28.7

Q ss_pred             cccccccCccCCHHHHHHHhhcHHHHHHHhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      ++|--|.+-|-|+.|+..|.++|-|+.++..
T Consensus        56 hYCieCaryf~t~~aL~~HkkgkvHkRR~Ke   86 (126)
T COG5112          56 HYCIECARYFITEKALMEHKKGKVHKRRAKE   86 (126)
T ss_pred             eeeehhHHHHHHHHHHHHHhccchhHHHHHH
Confidence            5699999999999999999999999998764

>PHA02768 hypothetical protein; Provisional

Probab=86.27  E-value=0.45  Score=35.76  Aligned_cols=26  Identities=15%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             CCceeeecCCCCCCCCCHHHHHHHHHhCCCc
Q 042126          197 RDFMCLYCNDRCHPFNSLEAVRKHMEAKRHC  227 (369)
Q Consensus       197 ~~~~Cl~C~~~~k~F~S~eav~~HM~dK~Hc  227 (369)
                      .|+.|-.|+   +.|....+++.||+.  |-
T Consensus         4 ~~y~C~~CG---K~Fs~~~~L~~H~r~--H~   29 (55)
T PHA02768          4 LGYECPICG---EIYIKRKSMITHLRK--HN   29 (55)
T ss_pred             cccCcchhC---CeeccHHHHHHHHHh--cC
Confidence            367999998   999999999999998  55

>PHA00616 hypothetical protein

Probab=85.23  E-value=0.44  Score=34.28  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=27.5

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCccc
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEY  180 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~y  180 (369)
                      -.|+.|+..+........||.+.||=.--..+|
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            479999999999999999999999974444444

>PHA00732 hypothetical protein

Probab=83.56  E-value=0.81  Score=36.68  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      |.|..|+++|.+..+++.|++.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~   23 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARR   23 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhc
Confidence            6799999999999999999873

>smart00355 ZnF_C2H2 zinc finger

Probab=83.28  E-value=0.85  Score=26.92  Aligned_cols=20  Identities=35%  Similarity=0.707  Sum_probs=18.5

Q ss_pred             eeeecCCCCCCCCCHHHHHHHHH
Q 042126          200 MCLYCNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       200 ~Cl~C~~~~k~F~S~eav~~HM~  222 (369)
                      .|..|+   +.|.+...++.||+
T Consensus         2 ~C~~C~---~~f~~~~~l~~H~~   21 (26)
T smart00355        2 RCPECG---KVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCc---chhCCHHHHHHHHH
Confidence            688998   89999999999998

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=82.68  E-value=2.1  Score=31.39  Aligned_cols=49  Identities=14%  Similarity=0.317  Sum_probs=37.2

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      -.|.||+. .-++...+.|....|...   .                  ....|..|..   .  ....+..||.-
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~---~------------------~~v~CPiC~~---~--~~~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSE---S------------------KNVVCPICSS---R--VTDNLIRHLNS   51 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCC---C------------------CCccCCCchh---h--hhhHHHHHHHH
Confidence            36999999 778999999999999863   1                  1248999973   2  33488899874

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=82.60  E-value=0.21  Score=48.74  Aligned_cols=30  Identities=27%  Similarity=0.472  Sum_probs=27.6

Q ss_pred             cccccccCccCCHHHHHHHhhcHHHHHHHh
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSHIMRAA   61 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~   61 (369)
                      ++|.+|+|.|+++|.|+-|..|..|.....
T Consensus        26 wyCqmCQkQcrDeNGFkCH~~SeSHqRql~   55 (309)
T KOG2837|consen   26 WYCQMCQKQCRDENGFKCHTMSESHQRQLL   55 (309)
T ss_pred             HHHHHHHHHhccccccccccCCHHHHHHHH
Confidence            679999999999999999999999998543

>PHA00732 hypothetical protein

Probab=82.44  E-value=1.2  Score=35.78  Aligned_cols=45  Identities=18%  Similarity=0.424  Sum_probs=36.4

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      .|-.|+..+.+......||...|.                         +..|-.|+   +.|.   .+..|+..|
T Consensus         3 ~C~~Cgk~F~s~s~Lk~H~r~~H~-------------------------~~~C~~Cg---KsF~---~l~~H~~~~   47 (79)
T PHA00732          3 KCPICGFTTVTLFALKQHARRNHT-------------------------LTKCPVCN---KSYR---RLNQHFYSQ   47 (79)
T ss_pred             cCCCCCCccCCHHHHHHHhhcccC-------------------------CCccCCCC---CEeC---Chhhhhccc
Confidence            599999999999999999986664                         12699998   7777   588888766

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=81.55  E-value=0.84  Score=27.70  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=18.7

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcC
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHG  172 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~  172 (369)
                      .|-+|+..+. ......||...|+
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCcCC-HHHHHHHHHhhCc
Confidence            4999999987 8899999999986

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=81.17  E-value=1.2  Score=27.90  Aligned_cols=21  Identities=24%  Similarity=0.725  Sum_probs=18.0

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|..|+.+| ...++..|++.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4699999999 88899999763

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.98  E-value=1.1  Score=42.98  Aligned_cols=30  Identities=20%  Similarity=0.395  Sum_probs=27.1

Q ss_pred             cccccccCccCCHHHHHHHhhcHHHHHHHhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      ..|.+|+--.. ++-|.-|+.||+|++++.+
T Consensus        36 l~C~vCn~piK-p~lW~vHvnsKkHre~id~   65 (264)
T KOG3032|consen   36 LVCRVCNVPIK-PSLWDVHVNSKKHREAIDS   65 (264)
T ss_pred             eeEEEecCccc-HHHHHHHhccHHHHHHHHH
Confidence            47999999999 9999999999999997554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	98.63
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.02
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.89
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	97.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	97.84
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	97.78
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	97.67
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.65
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	97.6
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	97.49
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	97.44
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	97.36
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	97.32
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	97.32
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.31
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	97.29
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.28
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.27
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.26
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.25
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.19
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.17
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	96.92
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	96.86
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.76
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	96.75
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	96.67
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.63
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	96.57
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	96.55
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.53
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.46
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	96.45
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.4
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.26
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	96.13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	96.1
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.08
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	95.99
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	95.94
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	95.88
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	95.88
1ard_A	29	Yeast transcription factor ADR1; transcription reg	95.82
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	95.82
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	95.82
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	95.77
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	95.71
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	95.7
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	95.67
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	95.66
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.63
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	95.63
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	94.61
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	95.6
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	95.6
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	95.55
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	95.55
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	95.54
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	95.54
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.46
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.44
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.41
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.38
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	95.34
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	95.34
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.31
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	95.27
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	95.25
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	95.23
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	95.22
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	95.18
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.17
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	95.15
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	95.14
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	95.14
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	94.1
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	95.09
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	95.08
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	95.06
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	94.06
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	95.02
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.01
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.0
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	94.95
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	94.93
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.93
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.92
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	94.91
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.89
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.87
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.85
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.85
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	94.84
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.83
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	94.81
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.81
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.81
1paa_A	30	Yeast transcription factor ADR1; transcription reg	94.78
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.76
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.74
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	94.72
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.72
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	94.71
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	94.71
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.71
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	94.7
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	94.7
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.69
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.69
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.69
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.68
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.67
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.67
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.67
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.67
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.66
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.66
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	94.65
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.63
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.63
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.63
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.62
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.61
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.6
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.57
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.56
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.55
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.54
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.54
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.54
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.53
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.53
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.52
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.52
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.52
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	94.52
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.51
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.51
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.48
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.48
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.47
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	94.47
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.46
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	94.45
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.45
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.45
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.44
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.44
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	94.44
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.44
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	94.43
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	94.43
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.43
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.42
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.41
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.41
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	94.41
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.4
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.39
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	94.38
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.38
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	94.38
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.37
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.35
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.34
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.32
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	94.31
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	94.28
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.27
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.27
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.26
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	94.24
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	94.22
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.19
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.19
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.18
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.18
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	94.18
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.17
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.15
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.09
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.05
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	93.97
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	93.96
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.96
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.93
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	93.89
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	93.85
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	93.82
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.8
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	93.8
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	93.77
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	93.77
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	93.75
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	93.7
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	93.61
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	93.58
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	93.43
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	93.43
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	93.38
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	93.33
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	93.25
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	93.08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	93.07
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.04
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	92.97
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	92.86
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	92.71
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	92.71
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	92.59
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	92.47
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	92.4
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	91.7
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	91.61
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	91.37
2epa_A	72	Krueppel-like factor 10; transforming growth facto	90.8
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	90.69
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.69
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	90.64
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	90.49
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	90.43
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	90.35
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	90.28
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	90.12
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	89.83
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	89.76
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	89.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	89.44
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	88.84
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	88.14
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	86.81
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	86.63
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	86.62
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	86.54
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	86.12
1ard_A	29	Yeast transcription factor ADR1; transcription reg	85.49
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	85.32
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	85.06
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	85.33
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	84.72
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	84.62
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	84.56
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	84.48
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	84.3
2epa_A	72	Krueppel-like factor 10; transforming growth facto	84.26
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.14
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.14
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.59
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.57
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.34
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.21
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	83.01
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.0
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	82.92
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	82.89
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	83.52
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	82.45
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	83.1
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	82.19
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	81.88
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.78
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	81.18
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	81.07
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.28
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	80.11
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.11

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=98.63  E-value=6e-09  Score=88.53  Aligned_cols=50  Identities=24%  Similarity=0.351  Sum_probs=45.1

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcc---cc--cCHHHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE---YL--KDPKGLLTYLGLKV  195 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~---yl--vd~~gLl~yL~~kI  195 (369)
                      .++.||||...+.+++..++||...|+|+|....   -|  |+..+||||||+++
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H~FD~~~i~~~~~LDfY~~IKLINyIR~~~   68 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKN   68 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCCHHHHHHHHHHHHHTC
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhcCCCHHHHHHhcCCCceEEEEEEEeeeccc
Confidence            5689999999999999999999999999999863   23  99999999999884

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.02  E-value=4.6e-06  Score=62.49  Aligned_cols=49  Identities=16%  Similarity=0.321  Sum_probs=42.3

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|.+|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        31 ~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           31 PCQYCGKRFHQKSDMKKHTFIHTGE-----------------------KPHKCQVCG---KAFSQSSNLITHSRK   79 (82)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHTC-----------------------CCEECTTTS---CEESSHHHHHHHHHH
T ss_pred             eCCcCChhhCCHHHHHHHHHHhcCC-----------------------CCCcCCCcc---hhhCChHHHHHHHHh
Confidence            5999999999999999999876651                       136899998   899999999999974

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.89  E-value=1.1e-05  Score=62.25  Aligned_cols=53  Identities=17%  Similarity=0.466  Sum_probs=43.9

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      -.|-.|+..+.+......||...|+-.                     ...+.|..|+   +.|.+...|+.||+..
T Consensus        36 ~~C~~C~~~f~~~~~l~~H~~~h~~~~---------------------~~~~~C~~C~---~~f~~~~~L~~H~~~~   88 (95)
T 2yt9_A           36 YSCPVCGLRFKRKDRMSYHVRSHDGSV---------------------GKPYICQSCG---KGFSRPDHLNGHIKQV   88 (95)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHHCCCC---------------------CSSBCCSSSC---CCBSSHHHHHHHHHHT
T ss_pred             CcCCCCCCccCCHHHHHHHHHHhcCCC---------------------CCceECCCcc---chhCCHHHHHHHHHHh
Confidence            359999999999999999998877631                     1236899998   8999999999999753

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=97.89  E-value=2.9e-05  Score=61.24  Aligned_cols=50  Identities=16%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      -.|-.|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        46 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~   95 (106)
T 2ee8_A           46 YTCDICHKAFRRQDHLRDHRYIHSKE-----------------------KPFKCQECG---KGFCQSRTLAVHKTL   95 (106)
T ss_dssp             CBCSSSCCBCSCHHHHHHHGGGSCCC-----------------------CTTSCSSSC---CCCSSHHHHHHHHHH
T ss_pred             cCCCCccchhCCHHHHHHHHHHhCCC-----------------------CCeECCCcC---CcccCHHHHHHHHHH
Confidence            35999999999999999999865541                       135899998   899999999999974

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.84  E-value=6.5e-05  Score=60.34  Aligned_cols=53  Identities=19%  Similarity=0.343  Sum_probs=42.8

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      .+-.|-+|+..+.+......||...++-                       ..+.|-.|+   +.|.+...|+.||+..
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~~  117 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMVSHTGE-----------------------MPYKCSSCS---QQFMQKKDLQSHMIKL  117 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS-----------------------CSEECSSSC---CEESSHHHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCC-----------------------CCccCCCcc---chhCCHHHHHHHHHHH
Confidence            3457999999999999999999765541                       136899998   8999999999999853

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.78  E-value=1.9e-05  Score=61.01  Aligned_cols=50  Identities=18%  Similarity=0.319  Sum_probs=42.1

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      -.|-.|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        37 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   86 (96)
T 2dmd_A           37 YKCKTCDYAAADSSSLNKHLRIHSDE-----------------------RPFKCQICP---YASRNSSQLTVHLRS   86 (96)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSCCC-----------------------CCEECSSSS---CEESSHHHHHHHHTT
T ss_pred             EeCCCCCCccCCHHHHHHHHHHhCCC-----------------------CCccCCCCC---CccCCHHHHHHHHHH
Confidence            35999999999999999999865441                       136899998   899999999999974

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.67  E-value=2.5e-05  Score=62.12  Aligned_cols=49  Identities=18%  Similarity=0.440  Sum_probs=42.1

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|-+|+..+.+......||...|+-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        39 ~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           39 GCGVCGKKFKMKHHLVGHMKIHTGI-----------------------KPYECNICA---KRFMWRDSFHRHVTS   87 (110)
T ss_dssp             ECTTTSCEESSSHHHHHHHTTTCCC-----------------------CCEECSSSC---CEESCHHHHHHHHHH
T ss_pred             cCCCCCcccCCHHHHHHHHHHcCCC-----------------------CCeeCCCCc---chhcCHHHHHHHHHH
Confidence            5999999999999999999865541                       136899998   899999999999975

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.65  E-value=1.9e-05  Score=67.27  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             CccccccccCccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      ..|.|..|+|.|.+.++|..|++||+|+.++...
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l   82 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQL   82 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             cceEcccCcchhCCHHHHHHHHhhhhhhHHHHHh
Confidence            4588999999999999999999999999987654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.60  E-value=0.00015  Score=57.51  Aligned_cols=48  Identities=25%  Similarity=0.350  Sum_probs=40.0

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|-.|+..+.+......||.  |.-                   ++   .+.|..|+   +.|.+...|+.||+.
T Consensus        44 ~C~~C~~~f~~~~~l~~H~~--H~~-------------------~~---~~~C~~C~---~~f~~~~~L~~H~~~   91 (107)
T 1wjp_A           44 VCPYCSLRFFSPELKQEHES--KCE-------------------YK---KLTCLECM---RTFKSSFSIWRHQVE   91 (107)
T ss_dssp             CCTTTCCCBSSHHHHHHHHH--HCS-------------------TG---GGEEGGGT---EECSSHHHHHHHHHH
T ss_pred             cCCCCCCccCCHHHHHHHHH--cCC-------------------CC---CccCcccc---chhCCHHHHHHHHHH
Confidence            38899999999999999994  641                   12   26999998   899999999999984

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=97.49  E-value=6.7e-05  Score=63.48  Aligned_cols=49  Identities=20%  Similarity=0.402  Sum_probs=38.3

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|-.|+..+.+...+..||.. |.-                   ++   -+.|-.|+   +.|.+...|+.||+.
T Consensus        52 ~C~~C~k~F~~~~~L~~H~~~-H~~-------------------~k---~~~C~~C~---k~F~~~~~L~~H~~~  100 (133)
T 2lt7_A           52 PCRYCEKVFPLAEYRTKHEIH-HTG-------------------ER---RYQCLACG---KSFINYQFMSSHIKS  100 (133)
T ss_dssp             ECSSSSCEESSHHHHHHHHHH-HHT-------------------CC---CEEESSSC---CEESSHHHHHHHHHH
T ss_pred             eCCccCeecccccchhhhccc-cCC-------------------Cc---cccCCCCC---CCcCCHHHHHHHhHH
Confidence            588999999999999999874 521                   11   35888897   889999999999975

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=97.44  E-value=0.00012  Score=55.67  Aligned_cols=49  Identities=18%  Similarity=0.458  Sum_probs=42.0

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|.+|+..+.+......||...+|-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        36 ~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   84 (90)
T 1a1h_A           36 QCRICMRNFSRSDHLTTHIRTHTGE-----------------------KPFACDICG---RKFARSDERKRHTKI   84 (90)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESSHHHHHHHHGG
T ss_pred             cCCCCCcccCCHHHHHHHHHHcCCC-----------------------CCccCCCCC---chhCCHHHHHHHHHH
Confidence            5999999999999999999876541                       136899998   899999999999974

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=97.36  E-value=0.00023  Score=55.12  Aligned_cols=49  Identities=27%  Similarity=0.524  Sum_probs=40.7

Q ss_pred             cccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          149 CCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|.+  |+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+-
T Consensus        47 ~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           47 KCTWEGCDWRFARSDELTRHYRKHTGA-----------------------KPFQCGVCN---RSFSRSDHLALHMKR   97 (100)
T ss_dssp             ECCSSSCCCEESSHHHHHHHHHHHTSC-----------------------CSCBCSSSC---CBCSSHHHHHHHHHH
T ss_pred             eCCCCCCCCccCCHHHHHHHHHHhCCC-----------------------CCeECCCCc---CccCCHHHHHHHHHH
Confidence            4765  999999999999999866541                       136899998   899999999999974

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.32  E-value=0.00027  Score=59.39  Aligned_cols=26  Identities=12%  Similarity=0.349  Sum_probs=22.7

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 042126           28 TPMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        28 ~~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ....|.|..|+|+|.+...|..|++.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~   47 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTM   47 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHT
T ss_pred             hhcccccccCCcccCCHHHHHHHHHh
Confidence            44568899999999999999999874

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=97.32  E-value=0.00075  Score=53.69  Aligned_cols=50  Identities=20%  Similarity=0.458  Sum_probs=38.9

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCcee--eecCCCCCCCCCHHHHHHHHH
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMC--LYCNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~C--l~C~~~~k~F~S~eav~~HM~  222 (369)
                      +-.|-.|+..+.+......||...+|-                       ..+.|  ..|+   +.|.+...|+.||+
T Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~L~~H~~  117 (119)
T 2jp9_A           66 PFQCKTCQRKFSRSDHLKTHTRTHTGE-----------------------KPFSCRWPSCQ---KKFARSDELVRHHN  117 (119)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHTC-----------------------CCEECCSTTCC---CEESSHHHHHHHHH
T ss_pred             CccCCccCchhCCHHHHHHHHHHhcCC-----------------------CCeeCCCCCCc---cccCCHHHHHHHHh
Confidence            456888888888888888888765441                       13578  6797   89999999999997

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.31  E-value=0.00013  Score=55.28  Aligned_cols=49  Identities=24%  Similarity=0.518  Sum_probs=40.6

Q ss_pred             cccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          149 CCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|.+  |+..+.+......||...+|-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus        37 ~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           37 HCDWDGCGWKFARSDELTRHYRKHTGH-----------------------RPFQCQKCD---RAFSRSDHLALHMKR   87 (89)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHHHHHCC-----------------------CCEECSSSS---CEESSHHHHHHHGGG
T ss_pred             CCCCCCCCCccCCHHHHHHHHHHcCCC-----------------------CCccCCCCC---cccCCHHHHHHHHHh
Confidence            5876  999999999999999765541                       136899998   899999999999973

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=8.8e-05  Score=59.42  Aligned_cols=25  Identities=24%  Similarity=0.579  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        17 ~~~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           17 ASKFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             CCSEEBSSSSCEESSHHHHHHHHHH
T ss_pred             CCCEECCccCchhcCHHHHHHHHHH
Confidence            3458999999999999999999864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.28  E-value=0.00031  Score=52.51  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=40.1

Q ss_pred             cccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee---cCCCCCCCCCHHHHHHHHHh
Q 042126          149 CCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY---CNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~---C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|-.  |+..+.+......||...+|                          +.|..   |+   +.|.+...|+.||+.
T Consensus        33 ~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------------~~C~~~~~C~---~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           33 ECPHEGCDKRFSLPSRLKRHEKVHAG--------------------------YPCKKDDSCS---FVGKTWTLYLKHVAE   83 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHHHHHS--------------------------EECCSCSSCC---CEESSHHHHHHHHHH
T ss_pred             eCCCCCCcCccCCHHHHHHHHHHhCC--------------------------CCCCCCCCCC---CccCCHHHHHHHHHh
Confidence            5878  99999999999999987665                          47888   87   899999999999974

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.27  E-value=2.2e-05  Score=60.37  Aligned_cols=48  Identities=8%  Similarity=0.083  Sum_probs=41.3

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|-.|+..+.+......||...|+.                        ...|-.|+   +.|.+...|+.||+.
T Consensus        33 ~C~~C~k~f~~~~~L~~H~~~h~~~------------------------~~~c~~C~---~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           33 ACDICGRKFARSDERKRHRDIQHIL------------------------PILEDKVE---ELLSKNYHLENEVAR   80 (88)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHTHH------------------------HHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             cCCCCCCccCCHHHHHHHHHHhCCC------------------------cchHHHHH---HHHHHHhhhHHHHHH
Confidence            5999999999999999999988741                        13688897   889999999999975

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.26  E-value=0.00015  Score=61.54  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             CccccccccCccCCHHHHHHHhhcHHHHHHHhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      ..|.|.+|++.|+|...+++|+++|+|+.++.+
T Consensus        92 ~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~  124 (127)
T 1zu1_A           92 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRL  124 (127)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHHHH
T ss_pred             CCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHH
Confidence            456799999999999999999999999998764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.25  E-value=0.00048  Score=59.92  Aligned_cols=73  Identities=18%  Similarity=0.319  Sum_probs=47.7

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCc-cc----ccCHHHHHHHHHHHhc-CCceeeecCCCCCCCCCHHHHHHH
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDV-EY----LKDPKGLLTYLGLKVK-RDFMCLYCNDRCHPFNSLEAVRKH  220 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~-~y----lvd~~gLl~yL~~kI~-~~~~Cl~C~~~~k~F~S~eav~~H  220 (369)
                      +-.|-.|+..+.+......||...+|- -|-. .+    ......|...++.--. ..+.|-.|+   +.|.+...|+.|
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~---~~f~~~~~L~~H  180 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTGE-KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG---KSFSRRDALNVH  180 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHCC-CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC---CEESSHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCCC-CCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCC---CccCCHHHHHHH
Confidence            346777888877777777887765542 1111 11    2455666666553322 236899997   899999999999


Q ss_pred             HHh
Q 042126          221 MEA  223 (369)
Q Consensus       221 M~d  223 (369)
                      |+.
T Consensus       181 ~~~  183 (190)
T 2i13_A          181 QRT  183 (190)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            963

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.19  E-value=0.00043  Score=60.20  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=52.9

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCc----c-cccCHHHHHHHHHHHhc-CCceeeecCCCCCCCCCHHHHHHH
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDV----E-YLKDPKGLLTYLGLKVK-RDFMCLYCNDRCHPFNSLEAVRKH  220 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~----~-ylvd~~gLl~yL~~kI~-~~~~Cl~C~~~~k~F~S~eav~~H  220 (369)
                      +-.|-.|+..+.+......||...|+-- |..    . -......|...+..-.. ..+.|-.|+   +.|.+...|+.|
T Consensus        77 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---~~f~~~~~L~~H  152 (190)
T 2i13_A           77 PYKCPECGKSFSQRANLRAHQRTHTGEK-PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG---KSFSREDNLHTH  152 (190)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHTCC-CEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTC---CEESCHHHHHHH
T ss_pred             CccCcccCCccCCHHHHHHHHHhcCCCC-CCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCC---cccCCHHHHHHH
Confidence            4579999999999999999999876521 111    1 12566777777664332 236899997   889999999999


Q ss_pred             HHh
Q 042126          221 MEA  223 (369)
Q Consensus       221 M~d  223 (369)
                      |+.
T Consensus       153 ~~~  155 (190)
T 2i13_A          153 QRT  155 (190)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            975

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.17  E-value=0.00059  Score=54.99  Aligned_cols=51  Identities=24%  Similarity=0.502  Sum_probs=39.4

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 042126          147 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       147 ~~~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav~~HM~  222 (369)
                      +-.|.+  |+..+.+......||...+|-                       ..+.|.+  |+   +.|.+...|+.||+
T Consensus        62 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~L~~H~~  115 (124)
T 1ubd_C           62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGD-----------------------RPYVCPFDGCN---KKFAQSTNLKSHIL  115 (124)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHCC-----------------------CCCCCCSTTCC---CCCSSTTTTHHHHH
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCCC-----------------------CceECCCCCCC---CccCCHHHHHHHHH
Confidence            456877  888888888888888765541                       1358875  97   88999999999997


Q ss_pred             h
Q 042126          223 A  223 (369)
Q Consensus       223 d  223 (369)
                      .
T Consensus       116 ~  116 (124)
T 1ubd_C          116 T  116 (124)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=96.92  E-value=0.00044  Score=55.77  Aligned_cols=48  Identities=21%  Similarity=0.403  Sum_probs=40.1

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav~~HM~  222 (369)
                      .|-.|+..+.+......||...++-                       ..+.|.+  |+   +.|.+...|+.||+
T Consensus        36 ~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~l~~H~~   85 (124)
T 1ubd_C           36 VCAECGKAFVESSKLKRHQLVHTGE-----------------------KPFQCTFEGCG---KRFSLDFNLRTHVR   85 (124)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSCC-----------------------CCEECCSTTCC---CEESCHHHHHHHHH
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCC-----------------------CCeeCCCCCCc---CccCCHHHHHHHHH
Confidence            5999999999999999999865541                       2368987  97   89999999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.86  E-value=0.0016  Score=54.35  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=22.1

Q ss_pred             CccccccccCccCCHHHHHHHhhcH
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNSR   54 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~Sk   54 (369)
                      ..+.|..|+|+|.+...|..|+++.
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~   26 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSE   26 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHH
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhh
Confidence            3578999999999999999999863

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.76  E-value=0.00094  Score=46.44  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=21.8

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcC
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHG  172 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~  172 (369)
                      -.|.+|+..+........||...|+
T Consensus        33 ~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C           33 YKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             cCCCCCcchhCCHHHHHHHHHHhcC
Confidence            3599999999999999999998885

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=96.75  E-value=0.0018  Score=56.16  Aligned_cols=23  Identities=17%  Similarity=0.622  Sum_probs=20.8

Q ss_pred             Cccccc--cccCccCCHHHHHHHhh
Q 042126           30 MTYSCG--LCGKGYRSSKALAQHLN   52 (369)
Q Consensus        30 ~~~~C~--~C~K~F~S~nA~~nHl~   52 (369)
                      ..|.|.  .|+|.|.+...|..|++
T Consensus        71 ~~~~C~~~~C~~~f~~~~~l~~H~~   95 (190)
T 1tf6_A           71 KNFTCDSDGCDLRFTTKANMKKHFN   95 (190)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHH
T ss_pred             CceeCCCCCCCCccCCHHHHHHHHH
Confidence            458899  89999999999999984

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=96.67  E-value=0.0011  Score=55.50  Aligned_cols=48  Identities=27%  Similarity=0.550  Sum_probs=40.7

Q ss_pred             cccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 042126          149 CCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       149 ~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav~~HM~  222 (369)
                      .|.+  |+..+.+......||...+|-                       ..+.|-+  |+   +.|.+...|+.||+
T Consensus        92 ~C~~~~C~~~f~~~~~L~~H~~~h~~~-----------------------~~~~C~~~~C~---k~f~~~~~L~~H~~  143 (155)
T 2rpc_A           92 PCPFPGCGKIFARSENLKIHKRTHTGE-----------------------KPFKCEFEGCD---RRFANSSDRKKHMH  143 (155)
T ss_dssp             ECSCTTTCCEESCHHHHHHHHTTTCSS-----------------------CSBCCSSTTCC---CCBSSHHHHHHSST
T ss_pred             cCCcCCCCCccCCHHHHHHHHHhhCCC-----------------------CCccCCCCCCC---CccCCHHHHHHHHH
Confidence            5888  999999999999999865541                       1368997  98   89999999999996

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.63  E-value=0.002  Score=54.48  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=29.2

Q ss_pred             ccccccccCccCCHHHHHHHhhcHHHHHHHhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      .+.|.+|+.+|.|...++.|.++++|+.++..
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~   63 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRR   63 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHH
Confidence            46799999999999999999999999998653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.57  E-value=0.0012  Score=55.10  Aligned_cols=52  Identities=19%  Similarity=0.513  Sum_probs=39.1

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 042126          147 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       147 ~~~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav~~HM~  222 (369)
                      +-.|-+  |+..+.+......||...|.-.                      ..+.|-.  |+   +.|.+...|+.||+
T Consensus        97 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~----------------------~~~~C~~~~C~---~~f~~~~~L~~H~~  151 (155)
T 2gli_A           97 PYMCEHEGCSKAFSNASDRAKHQNRTHSNE----------------------KPYVCKLPGCT---KRYTDPSSLRKHVK  151 (155)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTCSC----------------------CCEECCSTTTC---CEESSHHHHHHHHH
T ss_pred             CeeCCCCCCCCccCCHHHHHHHHHHhcCCC----------------------CCeeCCCCCCc---cccCCHHHHHHHHH
Confidence            356777  7777777777777776666421                      1368988  98   89999999999998


Q ss_pred             h
Q 042126          223 A  223 (369)
Q Consensus       223 d  223 (369)
                      .
T Consensus       152 ~  152 (155)
T 2gli_A          152 T  152 (155)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=96.55  E-value=0.0072  Score=52.33  Aligned_cols=74  Identities=19%  Similarity=0.320  Sum_probs=52.7

Q ss_pred             CCccc--cCCCCCCCHHHHHHHhhhhcCCCC-C------Ccc-cccCHHHHHHHHHHHhcC-Cceeee--cCCCCCCCCC
Q 042126          147 PACCF--MCDLPHDAIENCMVHMHKCHGFFI-P------DVE-YLKDPKGLLTYLGLKVKR-DFMCLY--CNDRCHPFNS  213 (369)
Q Consensus       147 ~~~CL--FC~~~~~s~e~nl~HM~~~H~F~I-P------~~~-ylvd~~gLl~yL~~kI~~-~~~Cl~--C~~~~k~F~S  213 (369)
                      +-.|-  .|+..+.+......||...|+-.. |      .=. -......|...+..-... .+.|..  |+   +.|.+
T Consensus        72 ~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~---k~F~~  148 (190)
T 1tf6_A           72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD---KRFSL  148 (190)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCC---CBCSS
T ss_pred             ceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCC---chhcC
Confidence            45788  899999999999999988895221 1      111 125667777776532211 268977  97   89999


Q ss_pred             HHHHHHHHHh
Q 042126          214 LEAVRKHMEA  223 (369)
Q Consensus       214 ~eav~~HM~d  223 (369)
                      ...|+.||+.
T Consensus       149 ~~~L~~H~~~  158 (190)
T 1tf6_A          149 PSRLKRHEKV  158 (190)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHHH
Confidence            9999999964

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.53  E-value=0.0018  Score=45.62  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=24.5

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCC
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIP  176 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP  176 (369)
                      -.|-.|+..+.+......||...|.=.+.
T Consensus        31 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~   59 (60)
T 2adr_A           31 YPCGLCNRAFTRRDLLIRHAQKIHSGNLG   59 (60)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTTSCCSSC
T ss_pred             ccCCCCCCccCCHHHHHHHHHHHcCCcCC
Confidence            35999999999999999999888875543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.46  E-value=0.004  Score=43.15  Aligned_cols=53  Identities=26%  Similarity=0.549  Sum_probs=44.1

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCC
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRH  226 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK~H  226 (369)
                      -.|-.|+..+.+......||...++-                       ..+.|-.|+   +.|.+...|+.||+...+
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDV-----------------------RPYHCTYCN---FSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC-----------------------CCEECSSSS---CEESSHHHHHHHHHSSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCC-----------------------CCccCCCCC---chhcCHHHHHHHHHHhcc
Confidence            46999999999999999999875541                       136899998   899999999999986544

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.45  E-value=0.0016  Score=47.46  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=22.6

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcC
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHG  172 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~  172 (369)
                      -.|-+|+..+........||...|+
T Consensus        38 ~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A           38 FKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             EeCCCCCCccCCHHHHHHHHHHHhC
Confidence            3599999999999999999998887

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.40  E-value=0.0032  Score=43.62  Aligned_cols=51  Identities=18%  Similarity=0.377  Sum_probs=43.1

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +-.|..|+..+.+......||...+|-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTGE-----------------------KPYKCEFCE---YAAAQKTSLRYHLER   54 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHCC-----------------------CCEECSSSS---CEESSHHHHHHHHHH
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCCC-----------------------CCcCCCCCc---chhCCHHHHHHHHHH
Confidence            457999999999999999999975551                       136899998   899999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.26  E-value=0.0027  Score=36.97  Aligned_cols=22  Identities=36%  Similarity=0.909  Sum_probs=20.5

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      |.|..|+|.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            6899999999999999999975

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.13  E-value=0.011  Score=43.84  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=27.0

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCc
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDV  178 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~  178 (369)
                      -.|-.|+..+.....+..||...|.-..|..
T Consensus        39 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A           39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             cCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            3699999999999999999999998776655

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.10  E-value=0.0032  Score=46.75  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=26.8

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCC
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPD  177 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~  177 (369)
                      -.|-.|+..+.....+..||...|+..-|.
T Consensus        46 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A           46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             cCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            369999999999999999999999987664

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.08  E-value=0.01  Score=46.40  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.5

Q ss_pred             CccccccccCccC-CHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYR-SSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~-S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|. +...|+.|++.
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~   47 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEV   47 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHH
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHH
Confidence            4589999999999 99999999954

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.99  E-value=0.0032  Score=36.95  Aligned_cols=23  Identities=35%  Similarity=0.774  Sum_probs=21.0

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...|..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            47899999999999999999864

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.94  E-value=0.0038  Score=36.77  Aligned_cols=23  Identities=30%  Similarity=0.804  Sum_probs=21.1

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...+..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTT
T ss_pred             CccCCCCCcccCCHHHHHHHHHh
Confidence            47899999999999999999874

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.88  E-value=0.0053  Score=45.00  Aligned_cols=25  Identities=36%  Similarity=0.671  Sum_probs=21.9

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~~   36 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQRV   36 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHh
Confidence            3468999999999999999999863

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.88  E-value=0.0039  Score=48.95  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=22.8

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcC
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHG  172 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~  172 (369)
                      -.|-+|+..|.....+..||.+.|.
T Consensus        57 ~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           57 FPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             EECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             cCCCCCCCEeCCHHHHHHhCcccCc
Confidence            3599999999999999999999985

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=95.82  E-value=0.005  Score=36.24  Aligned_cols=23  Identities=22%  Similarity=0.728  Sum_probs=21.1

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...+..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.82  E-value=0.006  Score=44.68  Aligned_cols=52  Identities=19%  Similarity=0.413  Sum_probs=43.8

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-+|+..+........||...++-                       .-+.|..|+   +.|.+...|+.||+.
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRVHTGE-----------------------KPYKCLECG---KAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGCS-----------------------CCEECSSSC---CEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHhcCCC-----------------------CCeECCCCC---cccCCHHHHHHHHHh
Confidence            4568999999999999999999865431                       136999998   899999999999974

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.82  E-value=0.022  Score=45.19  Aligned_cols=74  Identities=22%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCc-c----cccCHHHHHHHHHHH----hcCCceeeecCCCCCCCCCHHH
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV-E----YLKDPKGLLTYLGLK----VKRDFMCLYCNDRCHPFNSLEA  216 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~-~----ylvd~~gLl~yL~~k----I~~~~~Cl~C~~~~k~F~S~ea  216 (369)
                      .+-.|-.|+..+.+......||...++- -|-. .    .......|...+...    ....+.|..|+   +.|.+...
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~---~~f~~~~~   81 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTGE-KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ---ETFRRRME   81 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSSC-CSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSC---CEESSHHH
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCCC-CCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCC---CccCCHHH
Confidence            4567999999999999999999876652 2221 1    125677788887652    22346899997   89999999


Q ss_pred             HHHHHHh
Q 042126          217 VRKHMEA  223 (369)
Q Consensus       217 v~~HM~d  223 (369)
                      |+.||+.
T Consensus        82 l~~H~~~   88 (124)
T 2dlq_A           82 LRLHMVS   88 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999975

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=95.77  E-value=0.013  Score=47.56  Aligned_cols=27  Identities=19%  Similarity=0.488  Sum_probs=24.4

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCC
Q 042126          149 CCFMCDLPHDAIENCMVHMHKCHGFFI  175 (369)
Q Consensus       149 ~CLFC~~~~~s~e~nl~HM~~~H~F~I  175 (369)
                      .|-.|+..+........||...||-.|
T Consensus       102 ~C~~C~k~f~~~~~l~~H~~~h~~~~v  128 (129)
T 2wbt_A          102 VCPVCKKEFTSTDSALDHVCKKHNICV  128 (129)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTTCCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHHCCccC
Confidence            599999999999999999999998654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.71  E-value=0.013  Score=43.01  Aligned_cols=52  Identities=21%  Similarity=0.389  Sum_probs=43.7

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-.|+..+.+......||...++-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~-----------------------~~~~C~~C~---k~f~~~~~L~~H~~~   67 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKTVHTGE-----------------------KPYRCNICG---AQFNRPANLKTHTRI   67 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHHHHCCC-----------------------CSEECTTTC---CEESCHHHHHHHHHH
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHcCCC-----------------------CCEECCCCC---chhCCHHHHHHHHHh
Confidence            4567999999999999999999865431                       136899998   899999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.70  E-value=0.0043  Score=36.66  Aligned_cols=23  Identities=30%  Similarity=0.719  Sum_probs=21.1

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.....+..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCCCCCCcccCCHHHHHHHHHh
Confidence            47899999999999999999874

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.67  E-value=0.0071  Score=43.94  Aligned_cols=52  Identities=23%  Similarity=0.425  Sum_probs=43.4

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-.|+..+.+......||...++-                       .-+.|-.|+   +.|.+...|+.||+.
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~   59 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERIHCTD-----------------------RPFKCNYCS---FDTKQPSNLSKHMKK   59 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGGCCS-----------------------CSEECSSSS---CEESSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCC-----------------------CCEeCCCCC---CccCCHHHHHHHHHH
Confidence            4568999999999999999999864331                       136899998   899999999999975

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=95.66  E-value=0.0096  Score=41.68  Aligned_cols=50  Identities=18%  Similarity=0.389  Sum_probs=41.9

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      -.|-.|+..+.+......||...++-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   52 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSHTNE-----------------------KPYPCGLCN---RAFTRRDLLIRHAQK   52 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSS-----------------------CSEECTTTC---CEESSHHHHHHHHTT
T ss_pred             CcCCCCccccCCHHHHHHHHHHhCCC-----------------------CCccCCCCC---CccCCHHHHHHHHHH
Confidence            46999999999999999999864431                       136899998   899999999999964

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.63  E-value=0.0068  Score=37.46  Aligned_cols=24  Identities=38%  Similarity=0.656  Sum_probs=21.6

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHHH
Confidence            358999999999999999999874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.63  E-value=0.0081  Score=44.48  Aligned_cols=55  Identities=16%  Similarity=0.377  Sum_probs=45.9

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      .+-.|-.|+..+.+......||...|.-.                     ...+.|-.|+   +.|.+...|+.||+..
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~---------------------~~~~~C~~C~---~~f~~~~~L~~H~~~~   68 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHILQKHTEN---------------------VAKFHCPHCD---TVIARKSDLGVHLRKQ   68 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHHSSSS---------------------CSSEECSSSS---CEESSHHHHHHHHHHT
T ss_pred             CCeECCCcCchhCCHHHHHHHHHHhcCCC---------------------CCccCCCCCC---CccCCHHHHHHHHHHh
Confidence            45689999999999999999998777521                     0136999998   8999999999999865

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=94.61  E-value=0.002  Score=37.56  Aligned_cols=23  Identities=39%  Similarity=0.827  Sum_probs=21.0

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...|..|++.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            47899999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=95.60  E-value=0.0064  Score=37.91  Aligned_cols=23  Identities=26%  Similarity=0.644  Sum_probs=20.9

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...|..|++.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHHH
Confidence            47899999999999999999864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=95.60  E-value=0.0052  Score=36.26  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=21.2

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...|..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            47899999999999999999975

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=95.55  E-value=0.01  Score=37.29  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            9 IKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCCCCcccCcHHHHHHHHHH
Confidence            3468999999999999999999864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.55  E-value=0.0061  Score=35.72  Aligned_cols=23  Identities=35%  Similarity=0.710  Sum_probs=21.0

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            47899999999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.54  E-value=0.0064  Score=35.82  Aligned_cols=23  Identities=26%  Similarity=0.855  Sum_probs=21.0

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...|..|++.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999864

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=95.54  E-value=0.0087  Score=37.15  Aligned_cols=24  Identities=21%  Similarity=0.577  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.46  E-value=0.01  Score=36.97  Aligned_cols=25  Identities=32%  Similarity=0.561  Sum_probs=22.0

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCeecCcCCCCcCchHHHHHHHHH
Confidence            3468999999999999999999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.44  E-value=0.0092  Score=37.37  Aligned_cols=24  Identities=17%  Similarity=0.630  Sum_probs=21.9

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.....|..|++.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999975

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.41  E-value=0.0092  Score=37.37  Aligned_cols=25  Identities=32%  Similarity=0.640  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCccCCCCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.38  E-value=0.0094  Score=37.14  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.34  E-value=0.0091  Score=46.78  Aligned_cols=52  Identities=21%  Similarity=0.425  Sum_probs=44.1

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-.|+..|.+......||...||-                       .-+.|-.|+   +.|.....|+.||+.
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~-----------------------k~~~C~~C~---k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLHAA-----------------------QVFPCKYCP---ATFYSSPGLTRHINK   78 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTSCS-----------------------SSEECTTSS---CEESSHHHHHHHHHT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhccCC-----------------------CccCCCCCC---CEeCCHHHHHHhCcc
Confidence            3457999999999999999999876651                       135899998   999999999999974

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=95.34  E-value=0.019  Score=44.72  Aligned_cols=52  Identities=19%  Similarity=0.394  Sum_probs=44.3

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-+|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   67 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERTHTDE-----------------------RPYTCDICH---KAFRRQDHLRDHRYI   67 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHHHCCS-----------------------CCCBCSSSC---CBCSCHHHHHHHGGG
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHcCCC-----------------------CCcCCCCcc---chhCCHHHHHHHHHH
Confidence            4568999999999999999999876541                       136899998   899999999999975

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.31  E-value=0.0096  Score=37.28  Aligned_cols=25  Identities=24%  Similarity=0.592  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHH
Confidence            3468999999999999999999874

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=95.27  E-value=0.0083  Score=35.31  Aligned_cols=23  Identities=30%  Similarity=0.610  Sum_probs=20.8

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            47899999999999999999874

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.25  E-value=0.015  Score=42.99  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-.|+..+.+......||...++-                       .-+.|-.|+   +.|.+...|+.||+.
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~   68 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRTHTGE-----------------------KPYKCDECG---KAFIQRSHLIGHHRV   68 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTTTCCS-----------------------CSEECSSSC---CEESSHHHHHHHGGG
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHcCCC-----------------------cCeeCCCCC---CccCCHHHHHHHHHH
Confidence            4568999999999999999999864431                       136899998   899999999999963

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=95.23  E-value=0.011  Score=37.87  Aligned_cols=24  Identities=38%  Similarity=0.935  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|+++
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~   28 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNV   28 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CceECCCCCcccCCHHHHHHHHHH
Confidence            358999999999999999999875

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=95.22  E-value=0.011  Score=46.15  Aligned_cols=32  Identities=19%  Similarity=0.375  Sum_probs=27.4

Q ss_pred             ccccccccCcc--CCHHHHHHHhhcHHHHHHHhc
Q 042126           31 TYSCGLCGKGY--RSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        31 ~~~C~~C~K~F--~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      .|.|.+|++.+  .|.+..++|++++||+.+++.
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~   36 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD   36 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHH
Confidence            46799999999  567779999999999997653

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.18  E-value=0.013  Score=38.08  Aligned_cols=24  Identities=33%  Similarity=0.826  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRI   33 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHHh
Confidence            468999999999999999999874

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.17  E-value=0.01  Score=37.31  Aligned_cols=24  Identities=25%  Similarity=0.786  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999874

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.15  E-value=0.021  Score=43.54  Aligned_cols=52  Identities=19%  Similarity=0.430  Sum_probs=44.0

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|..|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   58 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMRCHTGV-----------------------KPYKCKTCD---YAAADSSSLNKHLRI   58 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGGGCCCC-----------------------CSEECSSSC---CEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHhcCCC-----------------------CCEeCCCCC---CccCCHHHHHHHHHH
Confidence            4567999999999999999999865441                       136899998   899999999999985

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.14  E-value=0.014  Score=37.77  Aligned_cols=24  Identities=29%  Similarity=0.632  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKM   32 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.14  E-value=0.017  Score=42.94  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=46.4

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      .+-.|-.|+..+.+......||...|+-....                   ..+.|-.|+   +.|.+...|+.||+.-
T Consensus        14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~-------------------~~~~C~~C~---~~f~~~~~L~~H~~~h   70 (86)
T 1x6h_A           14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP-------------------AAFVCSKCG---KTFTRRNTMARHADNC   70 (86)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHTTCSSCCC-------------------CCEECSSSC---CEESCHHHHHHHHHHC
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCC-------------------cceECCCCC---ChhCCHHHHHHHHHHc
Confidence            45679999999999999999999888642111                   136899998   8999999999999764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=94.10  E-value=0.0037  Score=37.13  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=21.0

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...+..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            47899999999999999999875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=95.09  E-value=0.015  Score=41.38  Aligned_cols=54  Identities=19%  Similarity=0.359  Sum_probs=44.5

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-.|+..+.+......||...|.-.                     ...+.|-.|+   +.|.+...|+.||+.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~---------------------~~~~~C~~C~---k~f~~~~~L~~H~~~   62 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRN---------------------VKVYPCPFCF---KEFTRKDNMTAHVKI   62 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSS---------------------CCCEECTTTC---CEESCHHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCC---------------------CcCeECCCCC---CccCCHHHHHHHHHH
Confidence            34579999999999999999999877410                     1236899998   899999999999975

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.08  E-value=0.036  Score=42.19  Aligned_cols=60  Identities=12%  Similarity=0.019  Sum_probs=46.0

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .-.|-.|+..+.+...+..||...|.-.-|...|.              ...+.|-.|+   +.|.+...|+.||+.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~--------------c~~~~C~~C~---k~f~~~~~L~~H~~~   84 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV--------------CYWEECPREG---KSFKAKYKLVNHIRV   84 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCC--------------CCCTTCSSTT---CCCSSHHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccc--------------eeccCCCCCC---cccCCHHHHHHHHHh
Confidence            34699999999999999999998675433332221              1126899997   899999999999984

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.06  E-value=0.022  Score=44.49  Aligned_cols=53  Identities=23%  Similarity=0.475  Sum_probs=43.7

Q ss_pred             CCCccccCCCCCC-CHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHD-AIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~-s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-.|+..+. ....+..||...|+-                   ++   -+.|-.|+   +.|.+...|+.||+.
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~~-------------------~~---~~~C~~C~---k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKL-------------------QD---ALKCQHCR---KQFKSKAGLNYHTMA   76 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHHHHHH-------------------HH---HHSCSSSC---CCCSCHHHHHHHHHH
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHHHcCC-------------------CC---CEECCCCC---CccCCHHHHHHHHHH
Confidence            4567999999999 999999999865530                   23   25899998   899999999999975

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=94.06  E-value=0.0039  Score=37.04  Aligned_cols=23  Identities=26%  Similarity=0.743  Sum_probs=20.8

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...|..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            47899999999999999999864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.02  E-value=0.0088  Score=34.91  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.01  E-value=0.016  Score=38.39  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emg_A           10 ENPFICSECGKVFTHKTNLIIHQKI   34 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCCEECCccCcccCCHHHHHHHHHH
Confidence            3458999999999999999999875

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.00  E-value=0.017  Score=38.25  Aligned_cols=25  Identities=28%  Similarity=0.620  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enf_A           10 EKPYKCNECGKVFTQNSHLVRHRGI   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHh
Confidence            3458999999999999999999874

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.95  E-value=0.012  Score=43.51  Aligned_cols=56  Identities=18%  Similarity=0.329  Sum_probs=45.2

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      .+-.|-.|+..+.....+..||...++-                    .-...+.|-.|+   +.|.+...|+.||+..
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~--------------------~~~~~~~C~~C~---k~f~~~~~L~~H~~~~   61 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQRKHAET--------------------VAALRFPCEFCG---KRFEKPDSVAAHRSKS   61 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHHHH--------------------TTTCCEECTTTC---CEESSHHHHHHHHHHT
T ss_pred             cCeECCCCCCeeCCHHHHHHHHHHhhcc--------------------CCCcccCCCCCC---chhCCHHHHHHHHHHh
Confidence            4567999999999999999999876651                    001236899998   8999999999999754

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.93  E-value=0.017  Score=37.30  Aligned_cols=25  Identities=32%  Similarity=0.671  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~   32 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHERI   32 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHHH
Confidence            3468999999999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.93  E-value=0.018  Score=38.03  Aligned_cols=25  Identities=28%  Similarity=0.577  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A           10 EKPYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             CCSSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHH
Confidence            3458999999999999999999975

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.92  E-value=0.017  Score=37.76  Aligned_cols=25  Identities=36%  Similarity=0.691  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2en7_A           10 MKPYVCNECGKAFRSKSYLIIHTRT   34 (44)
T ss_dssp             SSSSCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCCccCCHHHHHHHhhh
Confidence            3458999999999999999999965

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=94.91  E-value=0.016  Score=37.47  Aligned_cols=24  Identities=29%  Similarity=0.722  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRT   32 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCccCCCcChhhCCHHHHHHHHHh
Confidence            458999999999999999999865

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.89  E-value=0.017  Score=38.38  Aligned_cols=25  Identities=24%  Similarity=0.507  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en9_A           10 KKLFKCNECKKTFTQSSSLTVHQRI   34 (46)
T ss_dssp             SCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCEECCccCcccCCHHHHHHHHHH
Confidence            3458999999999999999999874

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.87  E-value=0.019  Score=37.93  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           10 EKPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCCeeCCCCCchhCCHHHHHHHHHH
Confidence            3458999999999999999999875

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.85  E-value=0.018  Score=38.33  Aligned_cols=25  Identities=40%  Similarity=0.817  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHSV   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTTT
T ss_pred             CcccCCCCCCcccCcHHHHHHHHHh
Confidence            3458999999999999999999875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.85  E-value=0.019  Score=38.00  Aligned_cols=25  Identities=32%  Similarity=0.719  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq2_A           10 GKPYQCNECGKAFSQTSKLARHQRV   34 (46)
T ss_dssp             SCSSSCCSSCCCCSSHHHHHHHGGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.84  E-value=0.018  Score=37.93  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2epv_A           10 EKPYECNECGKAFIWKSLLIVHERT   34 (44)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CcCeECCCCCcccCchHHHHHHHhH
Confidence            3468999999999999999999875

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.83  E-value=0.017  Score=38.25  Aligned_cols=25  Identities=28%  Similarity=0.628  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emi_A           10 ERHYECSECGKAFIQKSTLSMHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHhH
Confidence            3458999999999999999999875

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=94.81  E-value=0.016  Score=37.46  Aligned_cols=24  Identities=42%  Similarity=0.834  Sum_probs=21.6

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~   33 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRS   33 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhhh
Confidence            458999999999999999999864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.81  E-value=0.02  Score=37.95  Aligned_cols=25  Identities=32%  Similarity=0.651  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2yti_A           10 EKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCChhHHHHHhHh
Confidence            3458999999999999999999864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.81  E-value=0.017  Score=38.34  Aligned_cols=25  Identities=28%  Similarity=0.622  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytp_A           10 ERHYECSECGKAFARKSTLIMHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCcCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999875

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=94.78  E-value=0.013  Score=34.64  Aligned_cols=21  Identities=33%  Similarity=0.952  Sum_probs=19.3

Q ss_pred             ccccccccCccCCHHHHHHHh
Q 042126           31 TYSCGLCGKGYRSSKALAQHL   51 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl   51 (369)
                      .|.|..|+|.|.+...|..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            478999999999999999994

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.76  E-value=0.017  Score=37.73  Aligned_cols=25  Identities=24%  Similarity=0.591  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eof_A           10 EKPYECNECQKAFNTKSNLMVHQRT   34 (44)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHH
Confidence            3458999999999999999999864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=94.74  E-value=0.017  Score=38.32  Aligned_cols=25  Identities=32%  Similarity=0.652  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emj_A           10 EKPFECAECGKSFSISSQLATHQRI   34 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.72  E-value=0.021  Score=37.47  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2emb_A           10 RKRYECSKCQATFNLRKHLIQHQKT   34 (44)
T ss_dssp             CSSEECTTTCCEESCHHHHHHHGGG
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3458999999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.72  E-value=0.018  Score=38.11  Aligned_cols=25  Identities=28%  Similarity=0.626  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep3_A           10 EKPYRCAECGKAFTDRSNLFTHQKI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH
Confidence            3458999999999999999999874

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.71  E-value=0.022  Score=37.67  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDHIGLNQHRRI   34 (46)
T ss_dssp             CCSBCCTTTCCCBSSHHHHHHHHTT
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH
Confidence            3458999999999999999999874

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=94.71  E-value=0.02  Score=37.77  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el4_A           10 VKPYGCSQCAKTFSLKSQLIVHQRS   34 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCceECCCCCchhCCHHHHHHHHHH
Confidence            3458999999999999999999875

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.71  E-value=0.017  Score=37.86  Aligned_cols=24  Identities=25%  Similarity=0.584  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|+.|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQT   32 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999875

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.70  E-value=0.017  Score=37.35  Aligned_cols=25  Identities=28%  Similarity=0.701  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2ytb_A            9 EKPYRCDQCGKAFSQKGSLIVHIRV   33 (42)
T ss_dssp             CCSBCCTTTTCCBSSHHHHHTTGGG
T ss_pred             CCCeeCCCccchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.70  E-value=0.019  Score=37.94  Aligned_cols=25  Identities=36%  Similarity=0.763  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3458999999999999999999875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.69  E-value=0.017  Score=38.23  Aligned_cols=25  Identities=32%  Similarity=0.717  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em3_A           10 EKPYECKVCSKAFTQKAHLAQHQKT   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            3458999999999999999999964

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.69  E-value=0.017  Score=38.14  Aligned_cols=25  Identities=28%  Similarity=0.639  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A           10 EKPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcCccCCCCCCCcCCHHHHHHHHHh
Confidence            3458999999999999999999875

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.69  E-value=0.02  Score=37.79  Aligned_cols=25  Identities=28%  Similarity=0.598  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yts_A           10 EKPYICNECGKSFIQKSHLNRHRRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CcCEECCCCChhhCChHHHHHHHHh
Confidence            3458999999999999999999864

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.68  E-value=0.022  Score=37.93  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRI   34 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHH
Confidence            3468999999999999999999864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.025  Score=37.48  Aligned_cols=25  Identities=24%  Similarity=0.588  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yth_A           10 EKPFQCEECGKRFTQNSHLHSHQRV   34 (46)
T ss_dssp             SSSBCCSSSCCCBSSHHHHHHHGGG
T ss_pred             CcCCCCCCCCcccCCHHHHHHHHHh
Confidence            3458999999999999999999875

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.026  Score=37.45  Aligned_cols=25  Identities=36%  Similarity=0.699  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQRV   34 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CCCeeCcccCchhCCHHHHHHHHHh
Confidence            3468999999999999999999875

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.023  Score=37.65  Aligned_cols=25  Identities=32%  Similarity=0.713  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em6_A           10 EKCYKCDVCGKEFSQSSHLQTHQRV   34 (46)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.021  Score=37.67  Aligned_cols=24  Identities=29%  Similarity=0.614  Sum_probs=21.6

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQKC   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHHh
Confidence            458999999999999999999864

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.66  E-value=0.019  Score=38.10  Aligned_cols=25  Identities=28%  Similarity=0.592  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|.+|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A           10 TKSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCcCCCccCCHHHHHHHHHH
Confidence            3458999999999999999999975

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.66  E-value=0.025  Score=37.44  Aligned_cols=25  Identities=32%  Similarity=0.650  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytn_A           10 KKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHGGG
T ss_pred             CcCeECCCCCCeeCCHHHHHHHhhh
Confidence            3458999999999999999999865

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.65  E-value=0.017  Score=37.40  Aligned_cols=25  Identities=24%  Similarity=0.527  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2en2_A            9 EKPYKCETCGARFVQVAHLRAHVLI   33 (42)
T ss_dssp             SCSEECTTTCCEESSHHHHHHHTHH
T ss_pred             CCCEeCCCcChhhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.63  E-value=0.019  Score=37.97  Aligned_cols=25  Identities=36%  Similarity=0.786  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eow_A           10 EKPYKCNECGKAFRARSSLAIHQAT   34 (46)
T ss_dssp             CCCEECTTSCCEESSHHHHHHHHHH
T ss_pred             CCCeeccccCChhcCHHHHHHHHHH
Confidence            3458999999999999999999864

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.63  E-value=0.021  Score=37.92  Aligned_cols=24  Identities=25%  Similarity=0.639  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.63  E-value=0.016  Score=36.45  Aligned_cols=24  Identities=17%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             CccccccccCccCCH-HHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSS-KALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~-nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+. ..|..|++.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHHh
Confidence            458999999999999 999999864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=94.62  E-value=0.026  Score=37.37  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            3458999999999999999999975

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.61  E-value=0.011  Score=42.97  Aligned_cols=31  Identities=29%  Similarity=0.674  Sum_probs=28.7

Q ss_pred             ccccccCccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           33 SCGLCGKGYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        33 ~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      .|.+|+++|+..-+++.|+-|+.|..++...
T Consensus        15 eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~   45 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHIFSKQHISKVRET   45 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             cccccCcccccccchhhhhccHHHHHHHHHH
Confidence            6999999999999999999999999987643

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.60  E-value=0.019  Score=38.05  Aligned_cols=25  Identities=28%  Similarity=0.622  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emy_A           10 ENPYECHECGKAFSRKYQLISHQRT   34 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCcCCCCCCcccCcHHHHHHHHHH
Confidence            3458999999999999999999875

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.57  E-value=0.022  Score=37.72  Aligned_cols=25  Identities=28%  Similarity=0.737  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eml_A           10 EKPYECSVCGKAFSHRQSLSVHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCeeCCCcCCccCCHHHHHHHHHH
Confidence            3458999999999999999999875

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.56  E-value=0.021  Score=37.67  Aligned_cols=25  Identities=20%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytf_A           10 EKPFECSECQKAFNTKSNLIVHQRT   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHHH
Confidence            3458999999999999999999865

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.55  E-value=0.023  Score=37.56  Aligned_cols=25  Identities=32%  Similarity=0.662  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em7_A           10 EKPYKCEECGKGFICRRDLYTHHMV   34 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHGGG
T ss_pred             CcCccCCCccchhCCHHHHHHHHHH
Confidence            3468999999999999999999875

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.54  E-value=0.02  Score=37.99  Aligned_cols=25  Identities=32%  Similarity=0.664  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yto_A           10 EKPYKCSDCGKAFTRKSGLHIHQQS   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEECcccCCccCCHhHHHHHHHH
Confidence            3458999999999999999999865

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=94.54  E-value=0.024  Score=37.62  Aligned_cols=24  Identities=33%  Similarity=0.717  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQRV   34 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHHHH
Confidence            458999999999999999999964

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=94.54  E-value=0.022  Score=37.73  Aligned_cols=24  Identities=33%  Similarity=0.696  Sum_probs=22.0

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTG
T ss_pred             cCcCCCCCcchhCCHHHHHHHHHh
Confidence            458999999999999999999876

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.53  E-value=0.023  Score=37.65  Aligned_cols=24  Identities=25%  Similarity=0.674  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.53  E-value=0.022  Score=37.73  Aligned_cols=25  Identities=32%  Similarity=0.682  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ene_A           10 EKPYKCNECGKVFRHNSYLSRHQRI   34 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCChHHHHHHHhh
Confidence            3468999999999999999999875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.52  E-value=0.024  Score=37.59  Aligned_cols=25  Identities=36%  Similarity=0.708  Sum_probs=22.4

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWIT   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTH
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH
Confidence            3458999999999999999999875

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.52  E-value=0.024  Score=37.47  Aligned_cols=25  Identities=32%  Similarity=0.700  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq1_A           10 EKPYKCNECGKAFRAHSNLTTHQVI   34 (46)
T ss_dssp             SCCCCCTTTTCCCSSHHHHHHHHTT
T ss_pred             CCCeECCcCChhhCCHHHHHHHHHH
Confidence            3458999999999999999999874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.52  E-value=0.024  Score=37.61  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.6

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.52  E-value=0.022  Score=37.37  Aligned_cols=24  Identities=38%  Similarity=0.588  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQAL   34 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            458899999999999999999864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.51  E-value=0.023  Score=37.71  Aligned_cols=25  Identities=28%  Similarity=0.667  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQRV   34 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGGG
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHH
Confidence            3458999999999999999999874

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.51  E-value=0.024  Score=37.38  Aligned_cols=25  Identities=32%  Similarity=0.721  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQRI   34 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHh
Confidence            3458999999999999999999875

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.48  E-value=0.022  Score=37.68  Aligned_cols=25  Identities=28%  Similarity=0.701  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep2_A           10 EKPYECSICGKSFTKKSQLHVHQQI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.48  E-value=0.023  Score=37.78  Aligned_cols=25  Identities=28%  Similarity=0.590  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQRL   34 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHHH
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHH
Confidence            3458999999999999999999975

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.47  E-value=0.021  Score=37.82  Aligned_cols=25  Identities=28%  Similarity=0.680  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emh_A           10 ERPYICTVCGKAFTDRSNLIKHQKI   34 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHh
Confidence            3468999999999999999999864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=94.47  E-value=0.023  Score=34.16  Aligned_cols=23  Identities=30%  Similarity=0.767  Sum_probs=20.7

Q ss_pred             ccccc--cccCccCCHHHHHHHhhc
Q 042126           31 TYSCG--LCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~--~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|.  .|+|.|.+...|..|++.
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH
Confidence            47898  999999999999999975

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.46  E-value=0.025  Score=37.31  Aligned_cols=25  Identities=32%  Similarity=0.676  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHh
Confidence            3458999999999999999999864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=94.45  E-value=0.023  Score=41.71  Aligned_cols=50  Identities=20%  Similarity=0.418  Sum_probs=42.2

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          148 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       148 ~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      -.|-.|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   51 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHSDT-----------------------RPYPCQYCG---KRFHQKSDMKKHTFI   51 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHTC-----------------------CCEECSSSC---CEESSHHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHHHcCCC-----------------------CCeeCCcCC---hhhCCHHHHHHHHHH
Confidence            36999999999999999999875441                       136899998   899999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.45  E-value=0.019  Score=38.16  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHERI   34 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHTT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.45  E-value=0.028  Score=37.23  Aligned_cols=25  Identities=32%  Similarity=0.724  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCcCCCccChhhCChHHHHHHHHH
Confidence            3458999999999999999999875

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.44  E-value=0.022  Score=37.78  Aligned_cols=25  Identities=32%  Similarity=0.666  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em4_A           10 QRPYECIECGKAFKTKSSLICHRRS   34 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHh
Confidence            3458999999999999999999864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.44  E-value=0.02  Score=37.78  Aligned_cols=25  Identities=28%  Similarity=0.668  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq3_A           10 EKPYECNQCGKAFSVRSSLTTHQAI   34 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHTT
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.44  E-value=0.025  Score=37.31  Aligned_cols=25  Identities=28%  Similarity=0.616  Sum_probs=22.0

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq4_A           10 EKLYNCKECGKSFSRAPCLLKHERL   34 (46)
T ss_dssp             CCCCCBTTTTBCCSCHHHHHHHHHH
T ss_pred             CCCeECCCCCCccCchHHHHHHHHh
Confidence            3458999999999999999999864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.44  E-value=0.018  Score=36.50  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             CccccccccCccCCHHHHHHH-hh
Q 042126           30 MTYSCGLCGKGYRSSKALAQH-LN   52 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nH-l~   52 (369)
                      ..|.|..|+|.|.+...|..| ++
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~~   31 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVIQ   31 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999 54

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=94.43  E-value=0.026  Score=37.44  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQRM   34 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3458999999999999999999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.43  E-value=0.019  Score=37.95  Aligned_cols=25  Identities=28%  Similarity=0.675  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQRI   34 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHTT
T ss_pred             CcCccCCCCCCccCChHHHHHHHHH
Confidence            3468999999999999999999874

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.43  E-value=0.023  Score=37.59  Aligned_cols=25  Identities=36%  Similarity=0.650  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eq0_A           10 EKPYKCHECGKVFRRNSHLARHQLI   34 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH
Confidence            3458999999999999999999875

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.42  E-value=0.02  Score=37.45  Aligned_cols=24  Identities=29%  Similarity=0.649  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999875

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.41  E-value=0.022  Score=37.56  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emm_A           10 ERPHKCNECGKSFIQSAHLIQHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCeeCCCCChhhCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.41  E-value=0.022  Score=37.57  Aligned_cols=25  Identities=32%  Similarity=0.647  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoe_A           10 EKPYKCNECGKVFTQNSHLANHQRI   34 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHGG
T ss_pred             CCCeECCCcChhhCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.41  E-value=0.027  Score=36.98  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQ   32 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHHh
Confidence            458999999999999999999864

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.40  E-value=0.022  Score=37.68  Aligned_cols=25  Identities=28%  Similarity=0.614  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytj_A           10 EKPYICAECGKAFTIRSNLIKHQKI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCChhhCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.39  E-value=0.023  Score=37.71  Aligned_cols=25  Identities=32%  Similarity=0.739  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A           10 ERPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEEccccCcccCCHHHHHHHHHH
Confidence            3458999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.38  E-value=0.019  Score=43.65  Aligned_cols=52  Identities=15%  Similarity=0.351  Sum_probs=43.7

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-.|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   57 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLSHSGE-----------------------KPYSCPVCG---LRFKRKDRMSYHVRS   57 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHHSCSS-----------------------CSEECSSSC---CEESCHHHHHHHHHH
T ss_pred             CCeECCCCCCccCChHHHHHHHHhcCCC-----------------------CCCcCCCCC---CccCCHHHHHHHHHH
Confidence            4567999999999999999999865431                       136899998   899999999999975

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.38  E-value=0.024  Score=37.55  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emp_A           10 VKPYMCNECGKAFSVYSSLTTHQVI   34 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHHH
T ss_pred             CcCeECCCCCchhCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.38  E-value=0.03  Score=37.01  Aligned_cols=24  Identities=29%  Similarity=0.659  Sum_probs=21.8

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      ...|.|..|+|.|.+...|..|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           10 KKPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CCSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCCEECCccCchhCChHHHHHHhH
Confidence            346899999999999999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.37  E-value=0.027  Score=37.34  Aligned_cols=25  Identities=36%  Similarity=0.756  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emz_A           10 ERPFKCNECGKGFGRRSHLAGHLRL   34 (46)
T ss_dssp             CCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3458999999999999999999874

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.35  E-value=0.018  Score=38.18  Aligned_cols=25  Identities=44%  Similarity=0.818  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVLSAHLNQHLRV   34 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCeECcccChhhCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=94.34  E-value=0.02  Score=37.96  Aligned_cols=25  Identities=32%  Similarity=0.650  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ely_A           10 EKPFKCVECGKGFSRRSALNVHHKL   34 (46)
T ss_dssp             CCSBCCSSSCCCBSSTTHHHHHHHH
T ss_pred             CCCcccCccCcccCCHHHHHHHHHH
Confidence            3458999999999999999999874

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.32  E-value=0.024  Score=37.59  Aligned_cols=25  Identities=36%  Similarity=0.692  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQRV   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCeECcccCchhCCHHHHHHHHHH
Confidence            3468999999999999999999975

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.31  E-value=0.02  Score=37.79  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2epw_A           10 EKPCKCTECGKAFCWKSQLIMHQRT   34 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCCeeCCCCCCccCCHHHHHHHHHH
Confidence            3458999999999999999999864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=94.28  E-value=0.021  Score=37.71  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=20.6

Q ss_pred             CccccccccCccCCHHHHHHHh
Q 042126           30 MTYSCGLCGKGYRSSKALAQHL   51 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl   51 (369)
                      ..|.|..|+|+|.+...|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            4689999999999999999998

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.27  E-value=0.027  Score=37.29  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeeCcccCcccCChHHHHHHHHH
Confidence            3458999999999999999999875

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=94.27  E-value=0.029  Score=36.97  Aligned_cols=25  Identities=32%  Similarity=0.699  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em9_A           10 EKPYNCKECGKSFRWASCLLKHQRV   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CcCeECCccccccCChHHHHHHHHH
Confidence            3468999999999999999999865

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.26  E-value=0.024  Score=37.49  Aligned_cols=25  Identities=28%  Similarity=0.635  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytk_A           10 EKPYKCNECGKVFTQNSHLTNHWRI   34 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEeCCcCCCccCCHHHHHHHHHH
Confidence            3458999999999999999999864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=94.24  E-value=0.025  Score=38.42  Aligned_cols=23  Identities=35%  Similarity=0.905  Sum_probs=21.2

Q ss_pred             CccccccccCccCCHHHHHHHhh
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      ..|.|..|+|.|.....|..|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            35899999999999999999987

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=94.22  E-value=0.025  Score=34.20  Aligned_cols=23  Identities=35%  Similarity=0.700  Sum_probs=21.1

Q ss_pred             ccccc--cccCccCCHHHHHHHhhc
Q 042126           31 TYSCG--LCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~--~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|.  .|+|.|.+...|..|+++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHH
Confidence            47899  899999999999999975

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.19  E-value=0.025  Score=37.41  Aligned_cols=25  Identities=24%  Similarity=0.595  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en1_A           10 EKPFKCEECGKRFTQNSQLHSHQRV   34 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH
Confidence            3458999999999999999999865

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.19  E-value=0.027  Score=37.21  Aligned_cols=25  Identities=28%  Similarity=0.643  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2enc_A           10 EKPFKCEECGKGFYTNSQCYSHQRS   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCCCCCcCCChHHHHHHHHH
Confidence            3468999999999999999999864

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.18  E-value=0.029  Score=37.02  Aligned_cols=25  Identities=28%  Similarity=0.485  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en8_A           10 EKSHTCDECGKNFCYISALRIHQRV   34 (46)
T ss_dssp             CSSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCcCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.18  E-value=0.022  Score=37.66  Aligned_cols=25  Identities=32%  Similarity=0.614  Sum_probs=22.0

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en3_A           10 EKPFQCKECGMNFSWSCSLFKHLRS   34 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCCeeCcccChhhCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.18  E-value=0.022  Score=37.31  Aligned_cols=25  Identities=20%  Similarity=0.517  Sum_probs=22.0

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2yu5_A           10 ENPFKCSKCDRVFTQRNYLVQHERT   34 (44)
T ss_dssp             CCSEECSSSSCEESSSHHHHHHHHH
T ss_pred             CCCeECCCCCchhCCHHHHHHHhHh
Confidence            3458999999999999999999864

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.17  E-value=0.021  Score=37.78  Aligned_cols=25  Identities=28%  Similarity=0.684  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en6_A           10 EKPYGCNECGKTFSQKSILSAHQRT   34 (46)
T ss_dssp             SCCEEETTTTEEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCcccCchHHHHHHHHH
Confidence            3468999999999999999999875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.15  E-value=0.028  Score=37.24  Aligned_cols=25  Identities=36%  Similarity=0.745  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em2_A           10 EKPFKCKECGKAFRQNIHLASHLRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEECCcCCchhCCHHHHHHHHHH
Confidence            3458999999999999999999874

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.09  E-value=0.029  Score=37.06  Aligned_cols=25  Identities=28%  Similarity=0.658  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytd_A           10 EKPYKCSECGKAFHRHTHLNEHRRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCCeeCChHHHHHHHHH
Confidence            3458999999999999999999864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.05  E-value=0.025  Score=37.40  Aligned_cols=25  Identities=40%  Similarity=0.751  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQKV   34 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHh
Confidence            3468999999999999999999875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=93.97  E-value=0.025  Score=33.01  Aligned_cols=23  Identities=26%  Similarity=0.742  Sum_probs=20.9

Q ss_pred             ccccc--cccCccCCHHHHHHHhhc
Q 042126           31 TYSCG--LCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~--~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|.  .|+|.|.+...+..|++.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            47899  999999999999999875

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=93.96  E-value=0.022  Score=39.28  Aligned_cols=26  Identities=23%  Similarity=0.706  Sum_probs=22.4

Q ss_pred             CccccccccCccCCHHHHHHHhhcHH
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNSRS   55 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~Skk   55 (369)
                      ..|.|..|+|.|.+...|..|+++..
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHhc
Confidence            45889999999999999999998653

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.96  E-value=0.031  Score=36.96  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQVL   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHHH
Confidence            458999999999999999999864

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.93  E-value=0.026  Score=37.36  Aligned_cols=25  Identities=32%  Similarity=0.660  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQNSHLARHRRV   34 (46)
T ss_dssp             CSSEECSSSCCEESSSHHHHHHTHH
T ss_pred             CCCeECCcCCchhCCHHHHHHHHHh
Confidence            3468999999999999999999864

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.89  E-value=0.056  Score=39.58  Aligned_cols=24  Identities=21%  Similarity=0.591  Sum_probs=20.8

Q ss_pred             CCcccccc--ccCccCCHHHHHHHhh
Q 042126           29 PMTYSCGL--CGKGYRSSKALAQHLN   52 (369)
Q Consensus        29 ~~~~~C~~--C~K~F~S~nA~~nHl~   52 (369)
                      ...|.|..  |+|.|.+...|+.|++
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~   30 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKK   30 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHH
Confidence            34578887  9999999999999986

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.85  E-value=0.029  Score=36.98  Aligned_cols=25  Identities=28%  Similarity=0.733  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.....|..|+++
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~   32 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVRS   32 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999865

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.82  E-value=0.032  Score=37.47  Aligned_cols=26  Identities=35%  Similarity=0.580  Sum_probs=22.8

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 042126           28 TPMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        28 ~~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ....|.|..|+|.|.+...|+.|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLS   34 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHh
Confidence            34568999999999999999999875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.80  E-value=0.021  Score=37.78  Aligned_cols=25  Identities=36%  Similarity=0.760  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytg_A           10 EKPFKCGECGKSYNQRVHLTQHQRV   34 (46)
T ss_dssp             CCSEECTTTCCEESSSHHHHTTGGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=93.80  E-value=0.12  Score=40.63  Aligned_cols=75  Identities=17%  Similarity=0.291  Sum_probs=54.1

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhcCCC---CC--Cc-ccccCHHHHHHHHHHHhcC-CceeeecCCCCCCCCCHHH
Q 042126          146 DPACCFM--CDLPHDAIENCMVHMHKCHGFF---IP--DV-EYLKDPKGLLTYLGLKVKR-DFMCLYCNDRCHPFNSLEA  216 (369)
Q Consensus       146 ~~~~CLF--C~~~~~s~e~nl~HM~~~H~F~---IP--~~-~ylvd~~gLl~yL~~kI~~-~~~Cl~C~~~~k~F~S~ea  216 (369)
                      .+-.|-+  |+..+.+......||...++--   =+  .= ........|...+...... .+.|-.|+   +.|.+...
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---~~f~~~~~   81 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ---RKFSRSDH   81 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTC---CEESCHHH
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccC---chhCCHHH
Confidence            3457998  9999999999999999765421   11  01 1124667777777654322 36899997   89999999


Q ss_pred             HHHHHHh
Q 042126          217 VRKHMEA  223 (369)
Q Consensus       217 v~~HM~d  223 (369)
                      |+.||+.
T Consensus        82 l~~H~~~   88 (119)
T 2jp9_A           82 LKTHTRT   88 (119)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999974

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=93.77  E-value=0.034  Score=42.05  Aligned_cols=52  Identities=19%  Similarity=0.478  Sum_probs=43.6

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      +-.|-.|+..+.+......||...+|-                       ..+.|-.|+   +.|.+...|+.||+..
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~-----------------------~~~~C~~C~---k~f~~~~~L~~H~~~h   54 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRTHTGE-----------------------KPFACDICG---RKFARSDERKRHRDIQ   54 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESSHHHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHcCCC-----------------------CCccCCCCC---CccCCHHHHHHHHHHh
Confidence            457999999999999999999875441                       136899998   8999999999999763

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.77  E-value=0.068  Score=42.06  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=20.8

Q ss_pred             ccccccccCcc-CCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGY-RSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F-~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.| .+...|+.|++.
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~~   57 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHMEN   57 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHHH
T ss_pred             CcCCCCCCCCcccCHHHHHHHHHH
Confidence            58999999999 999999999863

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.75  E-value=0.017  Score=37.94  Aligned_cols=25  Identities=28%  Similarity=0.646  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2eox_A           10 SKSYNCNECGKAFTRIFHLTRHQKI   34 (44)
T ss_dssp             CCCEEETTTTEEESSSHHHHTTHHH
T ss_pred             CCCeECcccCcccCCHHHHHHHHHH
Confidence            3458999999999999999999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=93.70  E-value=0.033  Score=40.70  Aligned_cols=23  Identities=35%  Similarity=0.912  Sum_probs=21.2

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|+|.+...|..|++.
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~~   26 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRRA   26 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH
T ss_pred             CccCCCCCCEeCCHHHHHHHHHH
Confidence            58999999999999999999864

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=93.61  E-value=0.036  Score=38.28  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~~   46 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999874

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=93.58  E-value=0.042  Score=34.74  Aligned_cols=24  Identities=33%  Similarity=0.603  Sum_probs=21.3

Q ss_pred             Ccccccc--ccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|.+  |+|.|.+...|+.|++.
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            4588996  99999999999999874

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.43  E-value=0.074  Score=41.83  Aligned_cols=57  Identities=25%  Similarity=0.458  Sum_probs=45.4

Q ss_pred             CCCccccCCCCC-CCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHH-HHh
Q 042126          146 DPACCFMCDLPH-DAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKH-MEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~-~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~H-M~d  223 (369)
                      .+-.|-.|+..+ .+......||.. ||    +                   .-+.|-.|+   +.|.+...|+.| |+.
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~-h~----~-------------------k~~~C~~Cg---k~F~~~~~L~~H~~~~   85 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMEN-CK----Q-------------------EMFTCHHCG---KQLRSLAGMKYHVMAN   85 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHH-HC----C-------------------CCCCCSSSC---CCCSSHHHHHHHHHHH
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHH-HC----C-------------------CCeECCCCC---CeeCCHHHHHHHhHHh
Confidence            346799999999 999999999986 44    1                   135899998   999999999999 753


Q ss_pred             CCCccccC
Q 042126          224 KRHCKMHF  231 (369)
Q Consensus       224 K~Hcki~~  231 (369)
                        |...+|
T Consensus        86 --H~~~p~   91 (96)
T 2ctd_A           86 --HNSLPS   91 (96)
T ss_dssp             --TCCCSS
T ss_pred             --cCCCCC
Confidence              555555

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=93.43  E-value=0.036  Score=40.47  Aligned_cols=51  Identities=20%  Similarity=0.350  Sum_probs=42.3

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      |-.|-.|+..+.....+..||.. |.=                   +|   -+.|-.|+   +.|.....|+.||+-
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~~-Ht~-------------------ek---p~~C~~C~---k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRRA-HLG-------------------YR---PRSCPECG---KCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HHT-------------------CC---CEECTTTC---CEESSHHHHHHHGGG
T ss_pred             CccCCCCCCEeCCHHHHHHHHHH-hCC-------------------Cc---CeECCCCC---CCcCCHHHHHHHhCc
Confidence            45799999999999999999974 531                   12   36899997   999999999999963

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=93.38  E-value=0.041  Score=39.06  Aligned_cols=24  Identities=21%  Similarity=0.589  Sum_probs=20.3

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.+...|+.|+++
T Consensus        39 ~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A           39 KVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHH
Confidence            457899999999999999999865

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=93.33  E-value=0.043  Score=39.80  Aligned_cols=52  Identities=21%  Similarity=0.508  Sum_probs=42.9

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.|-+  |+..+.+......||...+|-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ-----------------------KPFQCRICM---RNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESCHHHHHHHHTT
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHhhCCC-----------------------CCeECCCCC---chhCCHHHHHHHHHh
Confidence            4567986  999999999999999865441                       236899998   899999999999963

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=93.25  E-value=0.0055  Score=37.85  Aligned_cols=23  Identities=30%  Similarity=0.777  Sum_probs=20.7

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...|..|++.
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999865

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=93.08  E-value=0.036  Score=55.60  Aligned_cols=32  Identities=19%  Similarity=0.492  Sum_probs=28.6

Q ss_pred             ccccccccCccCCHHHHHHHhhcHHHHHHHhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      .+.|..|+|.|.+++.|.+||.+|||+.++.+
T Consensus       292 ~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          292 GIYCPFCSRWFKTSSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             EECBTTTTBCBSSHHHHHTTSSSHHHHHHHHH
T ss_pred             CeeehhhhhhhccccccHHHhcccccchhHHH
Confidence            34699999999999999999999999997654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.07  E-value=0.036  Score=43.46  Aligned_cols=51  Identities=22%  Similarity=0.360  Sum_probs=42.8

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+-.| .|+..+.+......||...++-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   59 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMSMHLGL-----------------------RPYGCGVCG---KKFKMKHHLVGHMKI   59 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCC-----------------------CSEECTTTS---CEESSSHHHHHHHTT
T ss_pred             CCEec-cCCCccCCHHHHHHHHHHcCCC-----------------------cCccCCCCC---cccCCHHHHHHHHHH
Confidence            45679 8999999999999999976541                       136899998   899999999999974

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.04  E-value=0.058  Score=35.82  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             CCcccccc--ccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..  |+|.|.+...|+.|++.
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            34689986  99999999999999864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=92.97  E-value=0.031  Score=56.13  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=29.8

Q ss_pred             CccccccccC------ccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           30 MTYSCGLCGK------GYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        30 ~~~~C~~C~K------~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      ..|.|.+|++      ++..+..|+.|++|++||.++...
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~  398 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRN  398 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHH
Confidence            4578999998      899999999999999999976543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=92.86  E-value=0.068  Score=38.96  Aligned_cols=26  Identities=27%  Similarity=0.563  Sum_probs=22.6

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 042126           28 TPMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        28 ~~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ....|.|..|+|.|.+...|+.|++.
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~   39 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTV   39 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHH
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHH
Confidence            44568999999999999999999853

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=92.71  E-value=0.069  Score=39.94  Aligned_cols=25  Identities=36%  Similarity=0.701  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.....|..|++.
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~   35 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQ   35 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhh
Confidence            3468999999999999999999875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=92.71  E-value=0.065  Score=40.09  Aligned_cols=51  Identities=22%  Similarity=0.500  Sum_probs=42.2

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          147 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       147 ~~~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +-.|.+  |+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   56 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTGQ-----------------------KPFQCRICM---RNFSRSDHLTTHIRT   56 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESCHHHHHHHHHH
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCCC-----------------------CCccCCCCC---cccCCHHHHHHHHHH
Confidence            456874  999999999999999865541                       236899998   899999999999984

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=92.59  E-value=0.064  Score=38.83  Aligned_cols=23  Identities=22%  Similarity=0.748  Sum_probs=17.9

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.+...|..|+++
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           49 PFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CEECTTTCCEESCHHHHHHHHTT
T ss_pred             CeECCCCCchhCCHHHHHHHHHh
Confidence            47788888888888888888764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.47  E-value=0.1  Score=38.10  Aligned_cols=52  Identities=21%  Similarity=0.363  Sum_probs=42.8

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 042126          147 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       147 ~~~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav~~HM~  222 (369)
                      +-.|-+  |+..+.+...+..||...|.-                      ...+.|-.  |+   +.|.+...|+.||+
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~----------------------~~~~~C~~~~C~---k~f~~~~~L~~H~~   61 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIH----------------------QKSFSCPEPACG---KSFNFKKHLKEHMK   61 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGS----------------------CCCEECSCTTTC---CEESSHHHHHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCC----------------------CCCeECCCCCCc---CccCCHHHHHHHHH
Confidence            456888  999999999999999976742                      11358988  97   89999999999997


Q ss_pred             h
Q 042126          223 A  223 (369)
Q Consensus       223 d  223 (369)
                      .
T Consensus        62 ~   62 (79)
T 2dlk_A           62 L   62 (79)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.40  E-value=0.11  Score=40.51  Aligned_cols=49  Identities=20%  Similarity=0.348  Sum_probs=41.8

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHH
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~  222 (369)
                      .+-.|..|+..+.+......||.. |.                     +   -+.|..|+   +.|.+...|+.||+
T Consensus        15 ~~~~C~~C~~~f~~~~~l~~H~~~-H~---------------------~---~~~C~~C~---~~f~~~~~l~~H~~   63 (107)
T 1wjp_A           15 EVYQCRLCNAKLSSLLEQGSHERL-CR---------------------N---AAVCPYCS---LRFFSPELKQEHES   63 (107)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH-HH---------------------H---SBCCTTTC---CCBSSHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHH-CC---------------------C---CccCCCCC---CccCCHHHHHHHHH
Confidence            456799999999999999999986 41                     1   25899998   89999999999995

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.70  E-value=0.099  Score=36.03  Aligned_cols=24  Identities=33%  Similarity=0.785  Sum_probs=21.5

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      ...|.|..|+|.|.+...|+.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIK   33 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            346899999999999999999985

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.61  E-value=0.11  Score=32.59  Aligned_cols=24  Identities=25%  Similarity=0.585  Sum_probs=21.0

Q ss_pred             Cccccc--cccCccCCHHHHHHHhhc
Q 042126           30 MTYSCG--LCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~--~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|.  .|+|.|.+...|+.|++.
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~   30 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHH
Confidence            358899  599999999999999864

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=91.37  E-value=0.14  Score=41.24  Aligned_cols=51  Identities=20%  Similarity=0.425  Sum_probs=42.4

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      .+-.|-.|+..+........||.. |     +.                   -+.|-.|+   +.|.+...|+.||+..
T Consensus        73 ~~~~C~~C~k~f~~~~~l~~H~~~-H-----~~-------------------~~~C~~C~---k~f~~~~~l~~H~~~h  123 (129)
T 2wbt_A           73 SQFVCPLCLMPFSSSVSLKQHIRY-T-----EH-------------------TKVCPVCK---KEFTSTDSALDHVCKK  123 (129)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH-T-----CC-------------------CCBCTTTC---CBCSSHHHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHhHHHHHHHH-C-----CC-------------------CCCCCCCC---cccCCHHHHHHHHHHH
Confidence            345799999999999999999975 6     11                   14899998   8999999999999853

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=90.80  E-value=0.18  Score=36.34  Aligned_cols=52  Identities=17%  Similarity=0.401  Sum_probs=42.3

Q ss_pred             CCCCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHH
Q 042126          145 FDPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKH  220 (369)
Q Consensus       145 ~~~~~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav~~H  220 (369)
                      ..+-.|-.  |+..+........||...++-                       .-+.|.+  |+   +.|.+...|+.|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~-----------------------~~~~C~~~~C~---k~f~~~~~l~~H   68 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGE-----------------------KPFSCSWKGCE---RRFARSDELSRH   68 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHHHSSS-----------------------CSEECCCTTCC---CEESSHHHHHHH
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHhcCCC-----------------------CCccCCCCCCC---cccCCHHHHHhH
Confidence            35667988  999999999999999764431                       1368977  98   899999999999


Q ss_pred             HH
Q 042126          221 ME  222 (369)
Q Consensus       221 M~  222 (369)
                      |+
T Consensus        69 ~~   70 (72)
T 2epa_A           69 RR   70 (72)
T ss_dssp             TT
T ss_pred             hh
Confidence            85

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.69  E-value=0.16  Score=33.49  Aligned_cols=25  Identities=28%  Similarity=0.591  Sum_probs=22.0

Q ss_pred             CCccccc--cccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCG--LCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~--~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|.  .|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~~~C~k~f~~~~~L~~H~~~   36 (48)
T 2ent_A           10 EKPFACTWPGCGWRFSRSDELSRHRRS   36 (48)
T ss_dssp             CCCEECCSSSCCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            3458998  899999999999999875

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.69  E-value=0.15  Score=34.09  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      ...+.|..|+-+|++-++|.+|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            345679999999999999999964

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.64  E-value=0.16  Score=37.18  Aligned_cols=25  Identities=32%  Similarity=0.727  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~   40 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRT   40 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHH
Confidence            4568999999999999999999864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.49  E-value=0.058  Score=38.73  Aligned_cols=54  Identities=15%  Similarity=0.260  Sum_probs=43.1

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceee-ecCCCCCCCCCHHHHHHHHHhC
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCL-YCNDRCHPFNSLEAVRKHMEAK  224 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl-~C~~~~k~F~S~eav~~HM~dK  224 (369)
                      .+-.|-+|+..+. ......||.. .|-                       .-+.|- .|+   +.|.....|+.||+  
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~~-----------------------~p~~C~~~C~---k~f~~~~~L~~H~~--   58 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ-CPR-----------------------LPVACPNQCG---VGTVAREDLPGHLK--   58 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH-CSS-----------------------SEEECTTCCS---CCEEETTTHHHHHH--
T ss_pred             CCeeccccCCccC-HHHHHHHHHH-cCC-----------------------cCccCCcccC---cccccHHHHHHHHH--
Confidence            4568999999999 8888999986 441                       125898 897   88999999999997  


Q ss_pred             CCccc
Q 042126          225 RHCKM  229 (369)
Q Consensus       225 ~Hcki  229 (369)
                      .||..
T Consensus        59 ~hc~~   63 (66)
T 2eod_A           59 DSCNT   63 (66)
T ss_dssp             TTSSS
T ss_pred             hhccc
Confidence            47643

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.43  E-value=0.13  Score=37.96  Aligned_cols=23  Identities=26%  Similarity=0.777  Sum_probs=18.6

Q ss_pred             CccccccccCccCCHHHHHHHhh
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      ..|.|..|+|.|.+...|..|++
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             cceECCCCCChhCCHHHHHHHHH
Confidence            35788888888888888888875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=90.35  E-value=0.16  Score=42.34  Aligned_cols=51  Identities=24%  Similarity=0.432  Sum_probs=42.3

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +-.|-.|+..+.+...+..||.. |.-                   ++   .+.|-.|+   +.|.+...|+.||+.
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~~~-H~~-------------------~k---~~~C~~C~---k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHFNI-HSW-------------------EK---KYPCRYCE---KVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHHHH-HHC-------------------CS---CEECSSSS---CEESSHHHHHHHHHH
T ss_pred             CeECCCCCCCcCCHHHHHHHHHH-cCC-------------------CC---CeeCCccC---eecccccchhhhccc
Confidence            35799999999999999999974 631                   11   35899998   899999999999974

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=90.28  E-value=0.32  Score=36.91  Aligned_cols=52  Identities=15%  Similarity=0.413  Sum_probs=42.7

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHH
Q 042126          146 DPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHM  221 (369)
Q Consensus       146 ~~~~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav~~HM  221 (369)
                      .+-.|-+  |+..+.+......||...++-                       ..+.|.+  |+   +.|.+...|+.||
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~l~~H~   67 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGE-----------------------KPYKCTWEGCD---WRFARSDELTRHY   67 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHHHSCC-----------------------CCEECCSSSCC---CEESSHHHHHHHH
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHHhCCC-----------------------CCeeCCCCCCC---CccCCHHHHHHHH
Confidence            4567998  999999999999999865441                       1368875  97   8999999999999


Q ss_pred             Hh
Q 042126          222 EA  223 (369)
Q Consensus       222 ~d  223 (369)
                      +.
T Consensus        68 ~~   69 (100)
T 2ebt_A           68 RK   69 (100)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.12  E-value=0.16  Score=40.02  Aligned_cols=28  Identities=25%  Similarity=0.566  Sum_probs=23.7

Q ss_pred             CccccccccCccCCHHHHHHHhhcHHHH
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNSRSHI   57 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~SkkHk   57 (369)
                      ..|.|..|+|.|.+...|+.|++...|.
T Consensus        79 ~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           79 KVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             cceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            4589999999999999999999765443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.83  E-value=0.15  Score=41.08  Aligned_cols=54  Identities=17%  Similarity=0.394  Sum_probs=42.8

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHH
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHM  221 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM  221 (369)
                      .+-.|-.|+..+........||...|.-...+                   ..+.|-.|+   +.|.+...|+.||
T Consensus        17 kpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~e-------------------kpf~C~~Cg---k~F~~~~~L~~H~   70 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLN-------------------SSYVCVECN---FLTKRYDALSEHN   70 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHHCSSCCCS-------------------CCEEETTTT---EEESSTHHHHTHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhhCCCCCCC-------------------CCcCCCCCC---cccCCHHHHHHHH
Confidence            45679999999999999999998777311111                   136899997   9999999999994

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.76  E-value=0.23  Score=35.24  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=22.4

Q ss_pred             CCCccccccccCccCCHHHHHHHhh
Q 042126           28 TPMTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        28 ~~~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      +...|.|.-|++.|+-..+|++||+
T Consensus         9 ~~~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A            9 DGGRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CSSCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCCceeCCcccccccchHHHHhhhh
Confidence            3356899999999999999999997

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=89.74  E-value=0.22  Score=36.44  Aligned_cols=49  Identities=16%  Similarity=0.356  Sum_probs=40.6

Q ss_pred             cc--ccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHHh
Q 042126          149 CC--FMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       149 ~C--LFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav~~HM~d  223 (369)
                      .|  -.|+..+.+......||...++                    ++   -+.|-.  |+   +.|.+...|+.||+.
T Consensus         3 ~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------~~---~~~C~~~~C~---~~f~~~~~l~~H~~~   55 (85)
T 2j7j_A            3 VCHFENCGKAFKKHNQLKVHQFSHTQ--------------------QL---PYECPHEGCD---KRFSLPSRLKRHEKV   55 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHHHHHT--------------------TC---CEECCSTTCC---CEESSHHHHHHHHHH
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHhCC--------------------CC---CeeCCCCCCc---CccCCHHHHHHHHHH
Confidence            58  7899999999999999976443                    11   268988  98   899999999999975

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=89.44  E-value=0.24  Score=36.78  Aligned_cols=52  Identities=15%  Similarity=0.416  Sum_probs=42.2

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHH
Q 042126          146 DPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHM  221 (369)
Q Consensus       146 ~~~~CLF--C~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~--C~~~~k~F~S~eav~~HM  221 (369)
                      .+-.|-+  |+..+.+......||...++-                       ..+.|.+  |+   +.|.+...|+.||
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~l~~H~   57 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGE-----------------------KPYHCDWDGCG---WKFARSDELTRHY   57 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSS-----------------------CCEECCSTTTC---CEESSHHHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCC-----------------------CCcCCCCCCCC---CccCCHHHHHHHH
Confidence            3457999  999999999999999865431                       1358875  97   8999999999999


Q ss_pred             Hh
Q 042126          222 EA  223 (369)
Q Consensus       222 ~d  223 (369)
                      +.
T Consensus        58 ~~   59 (89)
T 2wbs_A           58 RK   59 (89)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.84  E-value=0.2  Score=37.89  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 042126           32 YSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      |.|..|+|.|.+...|+.|++.
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~   84 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRV   84 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHH
T ss_pred             cCCCCCCcccCCHHHHHHHHHh
Confidence            7899999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=88.14  E-value=0.21  Score=28.41  Aligned_cols=22  Identities=23%  Similarity=0.599  Sum_probs=19.2

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         2 ~~C~~C~---k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCE---RSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSC---CBCSSHHHHHHHGGG
T ss_pred             ccCCCCC---CcCCCHHHHHHHHHH
Confidence            4788897   899999999999964

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.81  E-value=0.25  Score=28.35  Aligned_cols=22  Identities=27%  Similarity=0.650  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         4 ~~C~~C~---k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            4 FSCSLCP---QRSRDFSAMTKHLRT   25 (27)
T ss_dssp             EECSSSS---CEESSHHHHHHHHHH
T ss_pred             ccCCCcC---hhhCCHHHHHHHHHH
Confidence            5788997   899999999999974

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=86.63  E-value=0.37  Score=37.48  Aligned_cols=25  Identities=36%  Similarity=0.652  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        23 ~kpy~C~~C~k~F~~~~~L~~H~~~   47 (88)
T 1x6f_A           23 NSTYQCKHCDSKLQSTAELTSHLNI   47 (88)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCcCCCCCCEeCCHHHHHHHHHH
Confidence            3468999999999999999999975

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.62  E-value=0.24  Score=35.33  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|..|+|.|. ...|+.|++.
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~   31 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ   31 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH
Confidence            34689999999999 9999999753

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.54  E-value=0.36  Score=38.78  Aligned_cols=25  Identities=16%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             CCCccccccccCccCCHHHHHHHhh
Q 042126           28 TPMTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        28 ~~~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      ....|.|..|+|.|.+...|..|++
T Consensus        15 gekpy~C~~Cgk~F~~~~~L~~H~r   39 (102)
T 2ghf_A           15 VEGGYECKYCTFQTPDLNMFTFHVD   39 (102)
T ss_dssp             CCSSEECSSCSCEESCHHHHHHHHH
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHH
Confidence            4456899999999999999999975

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=86.12  E-value=0.38  Score=29.40  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~---k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            3 FACPECP---KRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCSSSC---CCCSSHHHHHHHHHH
T ss_pred             ccCCCCC---chhCCHHHHHHHHHH
Confidence            5799997   899999999999974

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=85.49  E-value=0.4  Score=27.49  Aligned_cols=22  Identities=27%  Similarity=0.777  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~---~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            3 FVCEVCT---RAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCTTTC---CBCSSHHHHHHHHHH
T ss_pred             eECCCCC---cccCCHHHHHHHHHH
Confidence            5788897   899999999999975

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=85.32  E-value=0.29  Score=28.19  Aligned_cols=22  Identities=27%  Similarity=0.783  Sum_probs=19.5

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         4 ~~C~~C~---~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            4 YQCDYCG---RSFSDPTSKMRHLET   25 (30)
T ss_dssp             EECTTTC---CEESCHHHHHHHHHT
T ss_pred             ccCCCCC---cccCCHHHHHHHHHH
Confidence            5788997   899999999999974

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=85.06  E-value=0.31  Score=28.01  Aligned_cols=22  Identities=18%  Similarity=0.545  Sum_probs=19.4

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+-
T Consensus         4 ~~C~~C~---k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            4 YSCSVCG---KRFSLKHQMETHYRV   25 (28)
T ss_dssp             EECSSSC---CEESCHHHHHHHHTT
T ss_pred             ccCCCCC---cccCCHHHHHHHHHh
Confidence            5788997   899999999999963

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=85.33  E-value=0.17  Score=28.77  Aligned_cols=22  Identities=18%  Similarity=0.579  Sum_probs=19.4

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~---k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            3 YVCERCG---KRFVQSSQLANHIRH   24 (26)
Confidence            5799997   899999999999963

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=84.72  E-value=0.22  Score=33.26  Aligned_cols=24  Identities=21%  Similarity=0.556  Sum_probs=21.1

Q ss_pred             Cccccc--cccCccCCHHHHHHHhhc
Q 042126           30 MTYSCG--LCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~--~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|.  .|+|.|.....++.|++.
T Consensus        17 k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A           17 KTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             TEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             CCeECCCCCCCCccCCHHHHHHHHHH
Confidence            458996  699999999999999875

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=84.62  E-value=0.39  Score=40.43  Aligned_cols=29  Identities=24%  Similarity=0.543  Sum_probs=25.8

Q ss_pred             CceeeecCCCCCCCCCHHHHHHHHHhCCCccc
Q 042126          198 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKM  229 (369)
Q Consensus       198 ~~~Cl~C~~~~k~F~S~eav~~HM~dK~Hcki  229 (369)
                      ..+||+|.   +.|.+.+.+-+||+++.++-+
T Consensus        15 ~~~CLFCd---~~~~s~~~~l~H~k~~H~FD~   43 (121)
T 1wir_A           15 HTPCLFCD---RLFASAEETFSHCKLEHQFNI   43 (121)
T ss_dssp             CEECSSSC---CEESSHHHHHHHHHHSSCCCH
T ss_pred             ceeEecCC---CcccCHHHHHHHHHHhcCCCH
Confidence            35899999   889999999999999988755

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=84.56  E-value=0.5  Score=31.17  Aligned_cols=24  Identities=25%  Similarity=0.474  Sum_probs=21.3

Q ss_pred             ccccccccCccCCHHHHHHHhhcH
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSR   54 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~Sk   54 (369)
                      .|.|.+|.|.|.|.+.+..|-.++
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~   28 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAV   28 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhc
Confidence            378999999999999999998653

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=84.48  E-value=0.34  Score=27.72  Aligned_cols=22  Identities=18%  Similarity=0.620  Sum_probs=19.4

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...++.||+.
T Consensus         3 ~~C~~C~---k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            3 LKCRECG---KQFTTSGNLKRHLRI   24 (29)
T ss_dssp             EECTTTS---CEESCHHHHHHHHHH
T ss_pred             ccCCCCC---CccCChhHHHHHHHH
Confidence            5788897   899999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=84.30  E-value=0.28  Score=28.30  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.0

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHH
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~  222 (369)
                      +.|-.|+   +.|.....|+.||+
T Consensus         4 ~~C~~C~---k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            4 YRCPLCR---AGCPSLASMQAHMR   24 (27)
T ss_dssp             EEETTTT---EEESCHHHHHHHHT
T ss_pred             cCCCCCC---cccCCHHHHHHHHH
Confidence            5799997   89999999999996

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=84.26  E-value=0.58  Score=33.52  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             CCCcccccc--ccCccCCHHHHHHHhhc
Q 042126           28 TPMTYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        28 ~~~~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      ....|.|..  |+|.|.+...|+.|++.
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~   41 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRT   41 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHH
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHh
Confidence            344689999  99999999999999853

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.14  E-value=0.38  Score=29.39  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             CceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          198 DFMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       198 ~~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      .+.|-.|+   +.|.....|+.||+.
T Consensus         9 ~~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            9 PYKCPQCS---YASAIKANLNVHLRK   31 (36)
T ss_dssp             SEECSSSS---CEESSHHHHHHHHHH
T ss_pred             CCCCCCCC---cccCCHHHHHHHHHH
Confidence            35899997   899999999999974

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.14  E-value=0.48  Score=28.91  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+-
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2elr_A           10 HLCDMCG---KKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CBCTTTC---CBCSSHHHHHHHHHH
T ss_pred             eecCcCC---CCcCchHHHHHHHHH
Confidence            5899997   999999999999974

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=83.59  E-value=0.41  Score=28.94  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=19.8

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         8 ~~C~~C~---k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            8 YVCALCL---KKFVSSIRLRSHIRE   29 (35)
T ss_dssp             EECSSSC---CEESSHHHHHHHHHH
T ss_pred             eECCCCc---chhCCHHHHHHHHHH
Confidence            5899997   899999999999974

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.57  E-value=0.45  Score=29.32  Aligned_cols=22  Identities=18%  Similarity=0.677  Sum_probs=19.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (37)
T 2elo_A           10 YSCPVCE---KSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CEETTTT---EECSSHHHHHHHHHH
T ss_pred             cCCCCCC---CccCCHHHHHHHHHH
Confidence            5899997   899999999999974

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=83.34  E-value=0.53  Score=30.80  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCC
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGF  173 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F  173 (369)
                      ...|-||....+++...|.|....|..
T Consensus         9 kqhcrfckkkysdvknlikhire~hd~   35 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIRDAHDP   35 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            357999999999999999999999974

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.21  E-value=0.38  Score=29.53  Aligned_cols=22  Identities=32%  Similarity=0.798  Sum_probs=19.7

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.....|+.||+-
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2els_A           10 FTCEYCN---KVFKFKHSLQAHLRI   31 (36)
T ss_dssp             EECTTTC---CEESSHHHHHHHHHH
T ss_pred             EECCCCC---ceeCCHHHHHHHHHH
Confidence            5899997   899999999999974

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.01  E-value=0.77  Score=31.32  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCC
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNS  213 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S  213 (369)
                      .+-.|-.|+..+.....+..||...|.--                      .-+.|-.|+   +.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~----------------------k~~~C~~C~---k~F~~   53 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQVHTSE----------------------RPHKCQVWV---SGPSS   53 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCC----------------------CCCCSSSSC---CSSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC----------------------CCccCCCCC---CCCCC
Confidence            45679999999999999999998777421                      135899997   78875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.00  E-value=0.46  Score=29.15  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=19.8

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2elq_A           10 FKCSLCE---YATRSKSNLKAHMNR   31 (36)
T ss_dssp             EECSSSS---CEESCHHHHHHHHHH
T ss_pred             ccCCCCC---chhCCHHHHHHHHHH
Confidence            5899997   899999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=82.92  E-value=0.52  Score=29.00  Aligned_cols=22  Identities=23%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus        12 ~~C~~C~---k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A           12 FQCPDCD---RSFSRSDHLALHRKR   33 (37)
T ss_dssp             BCCTTTC---CCBSSHHHHHHHHGG
T ss_pred             ccCCCCC---cccCcHHHHHHHHHH
Confidence            5799997   899999999999964

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=82.89  E-value=0.44  Score=28.96  Aligned_cols=22  Identities=23%  Similarity=0.676  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         8 ~~C~~C~---k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            8 FVCRICL---SAFTTKANCARHLKV   29 (35)
T ss_dssp             EECSSSC---CEESSHHHHHHHHGG
T ss_pred             eeCCCCC---cccCCHHHHHHHHHH
Confidence            5899997   899999999999964

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=83.52  E-value=0.24  Score=28.73  Aligned_cols=22  Identities=23%  Similarity=0.774  Sum_probs=19.4

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         4 ~~C~~C~---k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            4 YVCIHCQ---RQFADPGALQRHVRI   25 (30)
Confidence            5799997   899999999999963

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=82.45  E-value=0.44  Score=27.09  Aligned_cols=22  Identities=23%  Similarity=0.670  Sum_probs=19.2

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...++.||+.
T Consensus         3 ~~C~~C~---~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            3 HKCPHCD---KKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCSSCC---CCCCTTTHHHHHHHH
T ss_pred             CcCCCCC---cccCCHHHHHHHHHH
Confidence            5788997   899999999999974

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=83.10  E-value=0.26  Score=28.60  Aligned_cols=21  Identities=19%  Similarity=0.618  Sum_probs=18.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHH
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~  222 (369)
                      +.|-.|+   +.|.+...|+.||+
T Consensus         3 ~~C~~C~---k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            3 CQCVMCG---KAFTQASSLIAHVR   23 (29)
Confidence            4799997   89999999999996

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=82.19  E-value=0.2  Score=42.35  Aligned_cols=29  Identities=28%  Similarity=0.457  Sum_probs=26.4

Q ss_pred             CceeeecCCCCCCCCCHHHHHHHHHhCCCccc
Q 042126          198 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKM  229 (369)
Q Consensus       198 ~~~Cl~C~~~~k~F~S~eav~~HM~dK~Hcki  229 (369)
                      .+.|..|+   |.|.+...++.|++.|.|-+-
T Consensus        50 pfyC~~C~---K~F~~~~~L~~H~rsK~HKrr   78 (124)
T 1zr9_A           50 LHRCLACA---RYFIDSTNLKTHFRSKDHKKR   78 (124)
T ss_dssp             CSEETTTT---EECSSHHHHHHHTTCHHHHHH
T ss_pred             ceEcccCc---chhCCHHHHHHHHhhhhhhHH
Confidence            46999998   999999999999999999764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=81.88  E-value=0.35  Score=27.81  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.3

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~---k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            3 FACPECP---KRFMRSDHLTLHILL   24 (29)
T ss_dssp             EECSSSS---CEESCSHHHHHHHTG
T ss_pred             ccCCCCC---chhCCHHHHHHHHHH
Confidence            5788997   899999999999964

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.78  E-value=0.48  Score=29.08  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.....|+.||+.
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2elv_A           10 YDCHICE---RKFKNELDRDRHMLV   31 (36)
T ss_dssp             EECSSSC---CEESSHHHHHHHHTT
T ss_pred             eECCCCC---CccCCHHHHHHHHHH
Confidence            5899997   899999999999964

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.18  E-value=0.68  Score=32.84  Aligned_cols=22  Identities=41%  Similarity=0.671  Sum_probs=20.3

Q ss_pred             CceeeecCCCCCCCCCHHHHHHHHH
Q 042126          198 DFMCLYCNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       198 ~~~Cl~C~~~~k~F~S~eav~~HM~  222 (369)
                      -+.|.-||   ++|.-+++|+.||+
T Consensus        12 ~~~CPrCn---~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCN---AQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTC---CCCSSHHHHHHHHH
T ss_pred             ceeCCccc---ccccchHHHHhhhh
Confidence            46899998   89999999999998

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=81.07  E-value=0.63  Score=26.65  Aligned_cols=22  Identities=18%  Similarity=0.656  Sum_probs=19.3

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...++.||+.
T Consensus         3 ~~C~~C~---k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            3 YQCQYCE---FRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCSSSS---CCCSCSHHHHHHHHH
T ss_pred             ccCCCCC---CccCCHHHHHHHHHH
Confidence            4788997   899999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.28  E-value=0.77  Score=29.84  Aligned_cols=22  Identities=18%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus        13 ~~C~~C~---k~F~~~~~L~~H~~~   34 (46)
T 2yti_A           13 YKCNECG---KVFTQNSHLARHRGI   34 (46)
T ss_dssp             TCCSSSC---CCCSSHHHHHHHHTT
T ss_pred             eECCCCC---cccCChhHHHHHhHh
Confidence            5899997   899999999999963

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=80.11  E-value=0.57  Score=29.41  Aligned_cols=22  Identities=32%  Similarity=0.830  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         7 ~~C~~C~---k~f~~~~~L~~H~~~   28 (39)
T 1njq_A            7 YTCSFCK---REFRSAQALGGHMNV   28 (39)
T ss_dssp             EECTTTC---CEESSHHHHHHHHHT
T ss_pred             eECCCCC---cccCCHHHHHHHHHH
Confidence            5898997   899999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.11  E-value=0.8  Score=29.75  Aligned_cols=22  Identities=18%  Similarity=0.448  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus        13 ~~C~~C~---k~F~~~~~L~~H~~~   34 (46)
T 2enf_A           13 YKCNECG---KVFTQNSHLVRHRGI   34 (46)
T ss_dssp             CBCSSSC---CBCSSHHHHHHHHTT
T ss_pred             eECCCCC---cccCCHHHHHHHHHh
Confidence            5899997   899999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	98.79
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.46
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.72
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.15
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	95.87
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	95.77
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	95.69
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	95.6
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	95.58
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	95.54
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	95.5
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	95.49
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.43
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	95.23
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.17
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.91
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	94.89
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	94.63
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.38
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	94.35
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.21
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.2
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	93.34
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	93.27
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	92.2
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	92.16
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.94
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	91.79
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.64
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	91.5
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	91.45
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	91.34
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	89.99
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	89.81
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	89.33
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	88.64
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	88.58
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	88.44
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	88.44
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	87.37
d1y0jb1	36	U-shaped transcription factor, different fingers {	87.34
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	86.54
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	85.66
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	85.59
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	84.48
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	83.52
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	82.65
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	82.36
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	82.25
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	82.06
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	81.55
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	80.55

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=5e-10  Score=93.17  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=45.7

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcc--c-c--cCHHHHHHHHHHHhc
Q 042126          146 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE--Y-L--KDPKGLLTYLGLKVK  196 (369)
Q Consensus       146 ~~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~--y-l--vd~~gLl~yL~~kI~  196 (369)
                      .++.||||++.+.++...+.||...|+|+|....  + |  |+..+||||||+++.
T Consensus        14 ~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~~~~~~LDfY~~IKLINYIR~~~~   69 (121)
T d1wira_          14 QHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNP   69 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCCHHHHHHHHHHHHHTCC
T ss_pred             ccceecccCCccCCHHHHHHHHHHhhCCCHHHHHHHcCCCccceEEEEeeeecccC
Confidence            6788999999999999999999999999999863  3 3  889999999999864

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.8e-08  Score=74.25  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=29.6

Q ss_pred             cccccccCccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      |+|..|+|.|.|.++|++|++||+||.++.+.
T Consensus        16 fYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L   47 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQL   47 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             EecccccCccCCHHHHHHHHcccHHHHHHHHh
Confidence            67999999999999999999999999987653

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00024  Score=43.12  Aligned_cols=27  Identities=26%  Similarity=0.753  Sum_probs=25.0

Q ss_pred             ccccccccCccCCHHHHHHHhhcHHHH
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSRSHI   57 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~SkkHk   57 (369)
                      .|.|..|+-+|.+..-+..||+||.|.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~   27 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHS   27 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhc
Confidence            378999999999999999999999984

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.15  E-value=0.0014  Score=40.34  Aligned_cols=23  Identities=22%  Similarity=0.728  Sum_probs=21.5

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|.+|+|.|.....|+.|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCCCCCCCCCCCCchHcccccCc
Confidence            48899999999999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.0018  Score=39.64  Aligned_cols=23  Identities=22%  Similarity=0.748  Sum_probs=21.5

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.....+..|++.
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCCC
Confidence            58999999999999999999975

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.0029  Score=40.59  Aligned_cols=26  Identities=19%  Similarity=0.511  Sum_probs=22.8

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 042126           28 TPMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        28 ~~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...+|.|.+|+|.|.....++.|++.
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCccccCCCCCCcccChHHHHHHccc
Confidence            34568999999999999999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.0038  Score=40.31  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=22.8

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 042126           28 TPMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        28 ~~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ...+|.|..|+|+|.....|..|++.
T Consensus         8 geKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           8 GIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CccCeEeCCCCCEecCHHHHHHHHhc
Confidence            34568999999999999999999864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0032  Score=40.47  Aligned_cols=25  Identities=28%  Similarity=0.700  Sum_probs=22.4

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..+|.|..|+|+|.....|+.|++.
T Consensus         6 ekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCCCcCCHhHHHHhCcc
Confidence            3468999999999999999999964

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0029  Score=38.09  Aligned_cols=23  Identities=30%  Similarity=0.689  Sum_probs=21.1

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      +|.|..|+|+|+....|..|.+.
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccC
Confidence            58899999999999999999874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0037  Score=40.25  Aligned_cols=26  Identities=19%  Similarity=0.540  Sum_probs=22.9

Q ss_pred             CCccccccccCccCCHHHHHHHhhcH
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNSR   54 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~Sk   54 (369)
                      ..+|.|.+|+|.|+....|+.|++..
T Consensus         6 ekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           6 EKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCCEeCCCCcccccchHHHHHHcccc
Confidence            34689999999999999999998753

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.003  Score=38.85  Aligned_cols=23  Identities=26%  Similarity=0.700  Sum_probs=21.5

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..|+|.|.....|..|++.
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CEECCcCCCeecchHHhhhhcCc
Confidence            48899999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0039  Score=39.47  Aligned_cols=24  Identities=38%  Similarity=0.706  Sum_probs=21.9

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|+|...+.|..|++.
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCeeCCCCCCEeCchHHhHhhccc
Confidence            468999999999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0038  Score=40.98  Aligned_cols=24  Identities=33%  Similarity=0.809  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.....|+.||++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~   27 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQ   27 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCcC
Confidence            368999999999999999999864

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0064  Score=39.39  Aligned_cols=26  Identities=31%  Similarity=0.698  Sum_probs=22.9

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 042126           28 TPMTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        28 ~~~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ....|.|..|+|+|.....|..|++.
T Consensus         9 ~ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCCEecCCCCceeeCHHHHHHhCcc
Confidence            34568999999999999999999875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.004  Score=37.59  Aligned_cols=27  Identities=41%  Similarity=0.898  Sum_probs=24.1

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  228 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~dK~Hck  228 (369)
                      +.|-+|+   -.|++.-.|-.||.+|.|.|
T Consensus         2 y~C~~Cn---F~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           2 YHCTYCN---FSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             EECSSSS---CEESSHHHHHHHHHSSSSCC
T ss_pred             cccceee---eeEeeccchhHhhhhhhhcc
Confidence            4799999   47899999999999999975

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0016  Score=47.83  Aligned_cols=41  Identities=29%  Similarity=0.476  Sum_probs=33.8

Q ss_pred             CCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 042126          176 PDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  228 (369)
Q Consensus       176 P~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~dK~Hck  228 (369)
                      |+.++=.|+.|+         ..+.|+.|+   |.|.|..+++.|++.|.|-|
T Consensus         2 ~~~e~D~D~pG~---------gqfYCv~C~---K~F~se~~l~~H~ksKkHKr   42 (67)
T d1zr9a1           2 PNAEFDPDLPGG---------GLHRCLACA---RYFIDSTNLKTHFRSKDHKK   42 (67)
T ss_dssp             CSCSSCSSSGGG---------GCSEETTTT---EECSSHHHHHHHTTCHHHHH
T ss_pred             CCCCCCCCCCCC---------CEEeccccc---CccCCHHHHHHHHcccHHHH
Confidence            455555677774         357999998   99999999999999999976

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.89  E-value=0.0055  Score=39.72  Aligned_cols=24  Identities=38%  Similarity=0.967  Sum_probs=22.0

Q ss_pred             ccccccccCccCCHHHHHHHhhcH
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSR   54 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~Sk   54 (369)
                      .|.|.+|+|.|.|-.||==||++.
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTT
T ss_pred             ccCCCCCCCccCCcccccchHhhh
Confidence            589999999999999999999764

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.63  E-value=0.012  Score=41.26  Aligned_cols=32  Identities=19%  Similarity=0.399  Sum_probs=28.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhcHHHHHHHh
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAA   61 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~   61 (369)
                      +..| |.+|+.+|+|...-++|..=|+|..+..
T Consensus        20 ~nk~-C~lCn~~Fns~~~AqsHY~GK~H~K~lk   51 (55)
T d1zu1a2          20 RSKC-CPVCNMTFSSPVVAESHYIGKTHIKNLR   51 (55)
T ss_dssp             TTTE-ETTTTEECSSHHHHHHHHTSHHHHHHHH
T ss_pred             chhh-hhhhhcccCCHHHHHHHhhhhHHHHHHH
Confidence            3345 9999999999999999999999999754

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.0093  Score=36.83  Aligned_cols=23  Identities=26%  Similarity=0.688  Sum_probs=21.0

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 042126           31 TYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|.+  |+|.|.....|+.|++.
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCccccc
Confidence            478988  99999999999999974

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.0068  Score=41.20  Aligned_cols=32  Identities=28%  Similarity=0.621  Sum_probs=29.1

Q ss_pred             cccccccCccCCHHHHHHHhhcHHHHHHHhcC
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSRSHIMRAAQG   63 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~~   63 (369)
                      -.|.+|+..|++.-+.+.|+-|+.|..++...
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~   38 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVRET   38 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHHHH
Confidence            36999999999999999999999999987754

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.015  Score=34.06  Aligned_cols=22  Identities=27%  Similarity=0.761  Sum_probs=20.7

Q ss_pred             ccccccCccCCHHHHHHHhhcH
Q 042126           33 SCGLCGKGYRSSKALAQHLNSR   54 (369)
Q Consensus        33 ~C~~C~K~F~S~nA~~nHl~Sk   54 (369)
                      .|.+|+|-|+-..-++.||+|.
T Consensus         3 kc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGC
T ss_pred             ccchhhhHhcchhHHHHHhhcc
Confidence            6999999999999999999984

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.012  Score=36.29  Aligned_cols=23  Identities=35%  Similarity=0.678  Sum_probs=21.0

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 042126           31 TYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..  |+|.|.....|+.|++.
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcCc
Confidence            478999  99999999999999974

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.34  E-value=0.021  Score=35.74  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=21.3

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 042126           31 TYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|.+  |+|.|.....++.|+++
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhh
Confidence            588999  99999999999999876

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.018  Score=39.20  Aligned_cols=24  Identities=33%  Similarity=0.887  Sum_probs=21.4

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~S   53 (369)
                      ..|.|..|+|.|.....|..||+.
T Consensus        29 kpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1          29 RPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CSEECTTTSCEESSSHHHHHHHTT
T ss_pred             cCCcCCCcCCEecCHHHHHHHHhc
Confidence            468999999999999999999864

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.20  E-value=0.023  Score=46.01  Aligned_cols=41  Identities=27%  Similarity=0.525  Sum_probs=32.3

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHhCCCccccCCCCCchHHHHhh-hhccc
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEAKRHCKMHFGDGDDEEEAELE-EFYDY  248 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~dK~Hcki~~~~~~~~~~~e~~-~FYDf  248 (369)
                      -.||+|.   +.|.+...+-+||+.+.++-+.-      -..++. +||++
T Consensus        16 ~~CLFCd---~~f~s~~~~l~H~k~~H~FD~~~------~~~~~~LDfY~~   57 (121)
T d1wira_          16 TPCLFCD---RLFASAEETFSHCKLEHQFNIDS------MVHKHGLEFYGY   57 (121)
T ss_dssp             EECSSSC---CEESSHHHHHHHHHHSSCCCHHH------HHHHTTCCHHHH
T ss_pred             ceecccC---CccCCHHHHHHHHHHhhCCCHHH------HHHHcCCCccce
Confidence            4899999   89999999999999988876642      233443 78987

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.16  E-value=0.032  Score=34.07  Aligned_cols=23  Identities=26%  Similarity=0.777  Sum_probs=20.7

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 042126           31 TYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|.+  |+|.|.....|+.|++.
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCc
Confidence            478999  99999999999999864

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.047  Score=36.99  Aligned_cols=23  Identities=39%  Similarity=0.755  Sum_probs=20.5

Q ss_pred             CccccccccCccCCHHHHHHHhh
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      ..|.|.+|+|.|...+.++||-.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEA   27 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEA   27 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHH
Confidence            46889999999999999999953

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.79  E-value=0.055  Score=32.44  Aligned_cols=25  Identities=24%  Similarity=0.655  Sum_probs=22.9

Q ss_pred             CccccccccCccCCHHHHHHHhhcH
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLNSR   54 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~Sk   54 (369)
                      ..|.|.+|+.+|.-.-.++-||-|.
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvsh   27 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSH   27 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecc
Confidence            4689999999999999999999874

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.043  Score=33.31  Aligned_cols=23  Identities=35%  Similarity=0.849  Sum_probs=21.0

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 042126           31 TYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|.+  |.|+|....+++.|+++
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CeecccCCCCcccCCHHHHHHHHHh
Confidence            478998  99999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.50  E-value=0.056  Score=33.35  Aligned_cols=23  Identities=30%  Similarity=0.767  Sum_probs=20.3

Q ss_pred             ccccc--cccCccCCHHHHHHHhhc
Q 042126           31 TYSCG--LCGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~--~C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|.  -|+|.|.....++.|++.
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCc
Confidence            47896  599999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.021  Score=34.68  Aligned_cols=23  Identities=30%  Similarity=0.733  Sum_probs=20.8

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 042126           31 TYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        31 ~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      .|.|..  |+|.|.....|+.|++.
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            478999  99999999999999975

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=91.34  E-value=0.16  Score=36.80  Aligned_cols=30  Identities=23%  Similarity=0.417  Sum_probs=27.9

Q ss_pred             ccccccCccCCHHHHHHHhhcHHHHHHHhc
Q 042126           33 SCGLCGKGYRSSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        33 ~C~~C~K~F~S~nA~~nHl~SkkHk~~~~~   62 (369)
                      .|.+|+-...|+..-..|-.||||..++..
T Consensus        34 ~CkvC~a~L~seSQriaHYeskkHa~kvr~   63 (72)
T d1zu1a1          34 QCKVCSAVLISESQKLAHYQSRKHANKVRR   63 (72)
T ss_dssp             EETTTTEECCSHHHHHHHHHCHHHHHHHHH
T ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999998763

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.07  Score=34.00  Aligned_cols=22  Identities=36%  Similarity=0.818  Sum_probs=20.4

Q ss_pred             ccccc--ccCccCCHHHHHHHhhc
Q 042126           32 YSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        32 ~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      |.|..  |+|.|.....|+.|++.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~   25 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL   25 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH
T ss_pred             eECCCCCCCCeeCChhHhccccCe
Confidence            67987  99999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.064  Score=36.30  Aligned_cols=49  Identities=24%  Similarity=0.335  Sum_probs=40.1

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHH
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME  222 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F~IP~~~ylvd~~gLl~yL~~kI~~~~~Cl~C~~~~k~F~S~eav~~HM~  222 (369)
                      +-.|= |+..+........||. .|.=                   +   .-+.|-.|+   +.|.....|..||+
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~~-~Ht~-------------------e---kpy~C~~C~---k~F~~~~~L~~H~r   51 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHMS-MHLG-------------------L---RPYGCGVCG---KKFKMKHHLVGHMK   51 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHHH-HHSC-------------------C---CSEECTTTS---CEESSSHHHHHHHT
T ss_pred             CCCCC-CCCeECCHHHhHHHhh-cccc-------------------c---cCCcCCCcC---CEecCHHHHHHHHh
Confidence            34684 9999999999999986 5651                   1   136999998   99999999999996

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.1  Score=32.67  Aligned_cols=23  Identities=26%  Similarity=0.777  Sum_probs=19.9

Q ss_pred             CccccccccCccCCHHHHHHHhh
Q 042126           30 MTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        30 ~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      ..|.|.-|+|+|.-.|+...|..
T Consensus         3 ~afvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             ceeeecccccchhcchHHHHHhh
Confidence            45789999999999999988753

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.64  E-value=0.12  Score=30.95  Aligned_cols=22  Identities=23%  Similarity=0.785  Sum_probs=19.8

Q ss_pred             ccccccccCccCCHHHHHHHhh
Q 042126           31 TYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      .|.|.+|++.|.-...-+-|.+
T Consensus         3 Pf~C~~CgrkFArsderkRH~k   24 (28)
T d1a1ia3           3 PFACDICGRKFARSDERKRHTK   24 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHHG
T ss_pred             Ccccchhhhhhhcchhhhhhhh
Confidence            5889999999999999888875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=88.58  E-value=0.093  Score=31.79  Aligned_cols=22  Identities=27%  Similarity=0.777  Sum_probs=20.0

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   |.|.....|+.||+-
T Consensus         3 ~~C~~C~---k~F~~~~~L~~H~r~   24 (29)
T d2adra1           3 FVCEVCT---RAFARQEHLKRHYRS   24 (29)
T ss_dssp             BCCTTTC---CCBSCHHHHHHHHHT
T ss_pred             CCCCCCC---CCCCCchHcccccCc
Confidence            5899998   999999999999974

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.44  E-value=0.12  Score=36.84  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=26.3

Q ss_pred             ccccccccCccC--CHHHHHHHhhcHHHHHHHhc
Q 042126           31 TYSCGLCGKGYR--SSKALAQHLNSRSHIMRAAQ   62 (369)
Q Consensus        31 ~~~C~~C~K~F~--S~nA~~nHl~SkkHk~~~~~   62 (369)
                      .|.|.+|++-|.  |.+.=+.|+..++|++++..
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~   36 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD   36 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHH
Confidence            367999999994  45556899999999998763

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.44  E-value=0.049  Score=36.72  Aligned_cols=25  Identities=20%  Similarity=0.610  Sum_probs=22.2

Q ss_pred             CCcccccc--ccCccCCHHHHHHHhhc
Q 042126           29 PMTYSCGL--CGKGYRSSKALAQHLNS   53 (369)
Q Consensus        29 ~~~~~C~~--C~K~F~S~nA~~nHl~S   53 (369)
                      ...|.|.+  |+|.|+....++.|++.
T Consensus        16 ekpy~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_          16 DKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             CCCeECCcCCCCccccCchHHHhhccc
Confidence            35689998  99999999999999875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.15  Score=31.20  Aligned_cols=22  Identities=23%  Similarity=0.827  Sum_probs=19.9

Q ss_pred             ceeee--cCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLY--CNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~--C~~~~k~F~S~eav~~HM~d  223 (369)
                      ++|-|  |+   |.|.....|+.||+-
T Consensus         3 ~~C~~~gCg---k~F~~~~~L~~H~r~   26 (30)
T d2glia3           3 HKCTFEGCR---KSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCSTTCC---CCCSSHHHHHHHHHH
T ss_pred             eeCCCCCCC---ceECChhHhhhhcCc
Confidence            58989  98   999999999999974

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.34  E-value=0.19  Score=31.13  Aligned_cols=24  Identities=29%  Similarity=0.664  Sum_probs=20.8

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 042126           29 PMTYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        29 ~~~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      +..|.|.+|+-.|+|..+++.|..
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            345789999999999999999963

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.14  Score=29.71  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=20.1

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   |.|+-.+.|..||+.
T Consensus         2 hkc~~c~---kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCG---KCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTT---BCCCCHHHHHHHGGG
T ss_pred             Cccchhh---hHhcchhHHHHHhhc
Confidence            5799998   999999999999986

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=85.66  E-value=0.25  Score=28.38  Aligned_cols=23  Identities=35%  Similarity=0.878  Sum_probs=20.4

Q ss_pred             cccccccCccCCHHHHHHHhhcH
Q 042126           32 YSCGLCGKGYRSSKALAQHLNSR   54 (369)
Q Consensus        32 ~~C~~C~K~F~S~nA~~nHl~Sk   54 (369)
                      |.|.+|..+|--..|+..|.+-.
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            57999999999999999998753

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.59  E-value=0.13  Score=32.46  Aligned_cols=22  Identities=23%  Similarity=0.676  Sum_probs=19.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   |.|.....|+.||+-
T Consensus         8 y~C~~C~---k~F~~~~~L~~H~r~   29 (35)
T d1srka_           8 FVCRICL---SAFTTKANCARHLKV   29 (35)
T ss_dssp             EECSSSC---CEESSHHHHHHHHGG
T ss_pred             ccCCCCC---CcccChHHHHHHccc
Confidence            5899998   999999999999973

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.48  E-value=0.16  Score=30.59  Aligned_cols=22  Identities=23%  Similarity=0.641  Sum_probs=20.0

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   |.|.-...|..||+-
T Consensus         4 y~C~~C~---k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           4 FQCRICM---RNFSRSDHLTTHIRT   25 (28)
T ss_dssp             EECTTTC---CEESCHHHHHHHHHH
T ss_pred             ccCCCCc---CEecccccccccCCC
Confidence            5899998   999999999999974

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=0.21  Score=30.42  Aligned_cols=22  Identities=27%  Similarity=0.671  Sum_probs=19.6

Q ss_pred             ceeee--cCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLY--CNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~--C~~~~k~F~S~eav~~HM~d  223 (369)
                      ++|-+  |+   |.|.....|..||+-
T Consensus         3 ~~C~~~gCg---k~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           3 FQCTFEGCG---KRFSLDFNLRTHVRI   26 (30)
T ss_dssp             EECCSTTCC---CEESCHHHHHHHHHH
T ss_pred             ccCCCCCCC---ceECcHHHcCccccc
Confidence            57877  98   999999999999984

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.65  E-value=0.4  Score=28.68  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=23.9

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCC
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHGF  173 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~F  173 (369)
                      |-.|.||...+.+-...-.|....||-
T Consensus         2 py~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             Cccccccccccccchhhhhhhhccccc
Confidence            457999999999999999999999983

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.36  E-value=0.41  Score=27.87  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=17.7

Q ss_pred             ccccccCccCCHHHHHHHhh
Q 042126           33 SCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        33 ~C~~C~K~F~S~nA~~nHl~   52 (369)
                      .|.+|.|+|-|.--++-|-+
T Consensus         2 qcp~c~k~f~skyylkvhnr   21 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNR   21 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhccc
Confidence            59999999999999888864

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.25  E-value=0.4  Score=27.52  Aligned_cols=22  Identities=27%  Similarity=0.709  Sum_probs=20.4

Q ss_pred             ccccccccCccCCHHHHHHHhh
Q 042126           31 TYSCGLCGKGYRSSKALAQHLN   52 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~   52 (369)
                      .|.|..|...|--...++.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999985

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.06  E-value=0.37  Score=28.83  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=22.3

Q ss_pred             ccccccccCccCCHHHHHHHhhcHH
Q 042126           31 TYSCGLCGKGYRSSKALAQHLNSRS   55 (369)
Q Consensus        31 ~~~C~~C~K~F~S~nA~~nHl~Skk   55 (369)
                      .|.|.+|.-.-.....++.|+++|-
T Consensus         2 py~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             Cccccccccccccchhhhhhhhccc
Confidence            5889999999999999999999874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=0.27  Score=29.39  Aligned_cols=26  Identities=35%  Similarity=0.599  Sum_probs=23.0

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcC
Q 042126          147 PACCFMCDLPHDAIENCMVHMHKCHG  172 (369)
Q Consensus       147 ~~~CLFC~~~~~s~e~nl~HM~~~H~  172 (369)
                      |-.|-||...-......-.||.+.||
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            45699999888889999999999998

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.55  E-value=0.27  Score=29.64  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=20.0

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 042126          199 FMCLYCNDRCHPFNSLEAVRKHMEA  223 (369)
Q Consensus       199 ~~Cl~C~~~~k~F~S~eav~~HM~d  223 (369)
                      +.|-.|+   |.|.-...|..||+-
T Consensus         3 y~C~~C~---k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           3 FACPECP---KRFMRSDHLSKHIKT   24 (29)
T ss_dssp             SCCTTTT---CCCSCSHHHHHHHHG
T ss_pred             EECCcCC---CeecchHHhhhhcCc
Confidence            5899998   999999999999985