Citrus Sinensis ID: 042152

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFPKLPLPSALKMDPNDSKQFEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPETPALFKKISFVDYTKGFLSRKLQEKSNVDFMRIENEDSKSY
ccEEcccccHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEcccccccccccEEEEEEEEEEEcccccccccccccccccccccccccHHHHHHcccEEEEccccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHcccccccccccEEcccccccccc
cEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccEEEEEccccccHHHEEEEEEccHHccccccccccccccHccccHHHHHHcHHcEEEEEEEEEcccccccccccEEEEcccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHcccccccHEEEEEEEccccccc
mqlkshgvsssLVEKVTAEvhdffdlpmEEREKFwqrpgeiegfgqnfvvskeqkldwgygftmfslpallrkphlfpklplpsalkmdpndskqfeDGVQSMRMnyypscqqqehvigfnphtdgSALTILLQLNEmdglqikkdgmrvpvktlpdtfiinvGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSmkldgeigpapslitpetpalfkkisfVDYTKGFlsrklqeksnvdfmrienedsksy
mqlkshgvssslvekvtaEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFPKLPlpsalkmdpndSKQFEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPETPALFKKISFVDYTKGFlsrklqeksnvdfmrienedsksy
MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFPKLPLPSALKMDPNDSKQFEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPETPALFKKISFVDYTKGFLSRKLQEKSNVDFMRIENEDSKSY
**************KVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFPKL*************************NYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPETPALFKKISFVDYTKGFLSR*********************
MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFPKLPLPSALKMDPNDSKQFEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPETPALFKKISFVDYTKGFLSRKLQEKSNVDF***********
***********LVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFPKLPLPSALKMDPNDSKQFEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPETPALFKKISFVDYTKGFLSRKLQEKSNVDFMRIENEDSKSY
MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFPKLPLPSALKMDPNDSKQFEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPETPALFKKISFVDYTKGFLSRKLQEKSNVDFMRIENE*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFPKLPLPSALKMDPNDSKQFEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPETPALFKKISFVDYTKGFLSRKLQEKSNVDFMRIENEDSKSY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query256 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.964 0.689 0.518 2e-75
D4N502360 Codeine O-demethylase OS= N/A no 0.964 0.686 0.509 1e-72
D4N501364 Probable 2-oxoglutarate/F N/A no 0.964 0.678 0.489 4e-67
D4N500364 Thebaine 6-O-demethylase N/A no 0.964 0.678 0.485 2e-66
A2A1A0352 S-norcoclaurine synthase N/A no 0.960 0.698 0.346 8e-40
Q96323356 Leucoanthocyanidin dioxyg no no 0.933 0.671 0.328 6e-34
P51091357 Leucoanthocyanidin dioxyg N/A no 0.929 0.666 0.329 2e-33
Q9M547334 Flavonol synthase/flavano N/A no 0.898 0.688 0.335 2e-31
P51092430 Leucoanthocyanidin dioxyg N/A no 0.976 0.581 0.321 3e-31
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.902 0.689 0.309 4e-30
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  282 bits (721), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 142/274 (51%), Positives = 184/274 (67%), Gaps = 27/274 (9%)

Query: 2   QLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYG 61
           QL +HG+ SS ++KV +E+ DFF+LPMEE++KFWQRP EIEGFGQ FVVS++QKLDW   
Sbjct: 85  QLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADL 144

Query: 62  FTMFSLPALLRKPHLFPKLPLP------------------------SALKMDPND-SKQF 96
           F     P  LRKPHLFPKLPLP                         AL++ P +  K F
Sbjct: 145 FFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLF 204

Query: 97  ED--GVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKT 154
           +D   VQSMRMNYYP C Q + VIG  PH+D   LT+L+Q+N+++GLQIKKDG  VPVK 
Sbjct: 205 DDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKP 264

Query: 155 LPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITP 214
           LP+ FI+N+G+ LEI+TNG YRSI HR  VNSEK RLS ATF+++ +  E+GPA SL+  
Sbjct: 265 LPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVER 324

Query: 215 ETPALFKKISFVDYTKGFLSRKLQEKSNVDFMRI 248
           +  A FK+++  +Y  G  SR L  K+ +D +RI
Sbjct: 325 QKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q96323|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|P51092|LDOX_PETHY Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
225462507 366 PREDICTED: protein SRG1 [Vitis vinifera] 0.992 0.693 0.562 2e-85
225453297 364 PREDICTED: protein SRG1 [Vitis vinifera] 0.980 0.689 0.561 8e-85
297734657316 unnamed protein product [Vitis vinifera] 0.980 0.794 0.561 1e-84
224061027 362 predicted protein [Populus trichocarpa] 0.988 0.698 0.564 5e-84
147776748 395 hypothetical protein VITISV_032872 [Viti 0.980 0.635 0.557 1e-83
255575141 364 Leucoanthocyanidin dioxygenase, putative 0.984 0.692 0.557 2e-83
297734658 367 unnamed protein product [Vitis vinifera] 0.980 0.683 0.557 1e-82
225453295348 PREDICTED: protein SRG1 [Vitis vinifera] 0.980 0.721 0.557 1e-82
224061381 359 predicted protein [Populus trichocarpa] 0.972 0.693 0.551 1e-81
359483589 361 PREDICTED: LOW QUALITY PROTEIN: protein 0.953 0.675 0.557 4e-81
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/279 (56%), Positives = 200/279 (71%), Gaps = 25/279 (8%)

Query: 2   QLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYG 61
           QL +HGVSS+LVE+V  EV +FF+LPMEE++KFWQ P ++EGFGQ FV+S+EQKLDW   
Sbjct: 87  QLTNHGVSSTLVERVKVEVQEFFNLPMEEKKKFWQEPEDLEGFGQAFVISEEQKLDWADM 146

Query: 62  FTMFSLPALLRKPHLFPKLPL------------------------PSALKMDPNDSKQ-F 96
           F M +LP  LRKPHLFPKLP+                          ALKM+ ND K+ F
Sbjct: 147 FYMITLPTYLRKPHLFPKLPISLRDSLEIYAVELRNLAMTILGFIAKALKMEANDMKELF 206

Query: 97  EDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTLP 156
           E+G Q MRMNYYP C Q + VIG  PH+D   LTILLQ+NEM+GLQI+KDGM VP+K LP
Sbjct: 207 EEGHQGMRMNYYPLCPQPDQVIGLTPHSDAVGLTILLQVNEMEGLQIRKDGMWVPIKPLP 266

Query: 157 DTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPET 216
             FI+N+G+ LEI+TN  YRSI HRATVNS K RLS ATFYS KL+G++GPAPSL++P++
Sbjct: 267 GAFIVNMGDILEIVTNAAYRSIEHRATVNSIKERLSVATFYSPKLNGDMGPAPSLVSPDS 326

Query: 217 PALFKKISFVDYTKGFLSRKLQEKSNVDFMRIENEDSKS 255
           P+LFK+I   DY KG  SR+L  KS ++ +R E  ++++
Sbjct: 327 PSLFKRIGVADYFKGLFSRELHGKSYLEVLRTETGEAQN 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734657|emb|CBI16708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061027|ref|XP_002300322.1| predicted protein [Populus trichocarpa] gi|222847580|gb|EEE85127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147776748|emb|CAN72414.1| hypothetical protein VITISV_032872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297734658|emb|CBI16709.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225453295|ref|XP_002269432.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483589|ref|XP_003632983.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query256
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.640 0.458 0.526 1.6e-71
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.640 0.460 0.5 1.8e-66
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.664 0.470 0.517 2.9e-66
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.667 0.484 0.52 6.1e-66
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.667 0.480 0.494 1.6e-61
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.613 0.431 0.459 7.7e-52
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.632 0.458 0.375 7.5e-42
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.511 0.376 0.454 1.7e-40
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.523 0.385 0.441 3.1e-37
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.574 0.421 0.376 1.3e-36
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 450 (163.5 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
 Identities = 88/167 (52%), Positives = 119/167 (71%)

Query:    85 ALKMDPND-SKQFED--GVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGL 141
             AL++ P +  K F+D   VQSMRMNYYP C Q + VIG  PH+D   LT+L+Q+N+++GL
Sbjct:   192 ALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGL 251

Query:   142 QIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKL 201
             QIKKDG  VPVK LP+ FI+N+G+ LEI+TNG YRSI HR  VNSEK RLS ATF+++ +
Sbjct:   252 QIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGM 311

Query:   202 DGEIGPAPSLITPETPALFKKISFVDYTKGFLSRKLQEKSNVDFMRI 248
               E+GPA SL+  +  A FK+++  +Y  G  SR L  K+ +D +RI
Sbjct:   312 YKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39224SRG1_ARATHNo assigned EC number0.51820.96480.6899yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007249001
SubName- Full=Chromosome undetermined scaffold_186, whole genome shotgun sequence; (366 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-105
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-71
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-59
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-56
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 8e-47
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-46
PLN02947374 PLN02947, PLN02947, oxidoreductase 4e-41
PLN02704335 PLN02704, PLN02704, flavonol synthase 4e-38
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 5e-38
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-37
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-36
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-33
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-32
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 6e-30
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-28
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-27
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 5e-27
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 4e-25
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 6e-24
PLN02997325 PLN02997, PLN02997, flavonol synthase 3e-22
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-20
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-18
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-16
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-16
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 9e-16
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-13
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 5e-04
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 9e-04
PLN02485329 PLN02485, PLN02485, oxidoreductase 0.003
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  308 bits (790), Expect = e-105
 Identities = 145/273 (53%), Positives = 184/273 (67%), Gaps = 26/273 (9%)

Query: 2   QLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYG 61
           QL +HG+ SS ++KV +E+ DFF+LPMEE++K WQRPGEIEGFGQ FVVS++QKLDW   
Sbjct: 85  QLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADM 144

Query: 62  FTMFSLPALLRKPHLFPKLPLP------------------------SALKMDPND-SKQF 96
           F +   P  LRKPHLFPKLPLP                        SAL++ P +  K F
Sbjct: 145 FFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLF 204

Query: 97  EDGV-QSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRVPVKTL 155
           +D + QS+RMNYYP C Q + VIG  PH+D   LTILLQ+NE++GLQIKKDG  V VK L
Sbjct: 205 DDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPL 264

Query: 156 PDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITPE 215
           P+  ++NVG+ LEI+TNG YRSI HR  VNSEK RLS ATF++  +  EIGPA SL+  +
Sbjct: 265 PNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQ 324

Query: 216 TPALFKKISFVDYTKGFLSRKLQEKSNVDFMRI 248
             ALFK ++  +Y  G  SR+L  K+ +D MRI
Sbjct: 325 KAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 256
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02947374 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.95
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.63
PLN03176120 flavanone-3-hydroxylase; Provisional 99.04
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.23
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.59
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 93.49
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 93.39
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 86.1
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 84.19
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 83.3
TIGR02466201 conserved hypothetical protein. This family consis 81.66
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=5.8e-70  Score=491.14  Aligned_cols=248  Identities=58%  Similarity=0.985  Sum_probs=223.8

Q ss_pred             CEEeccCCCHHHHHHHHHHHHHHhCCCHHHHhccccCCCceeeccccccccccccCCcccccccccCcccccCCCCCCCC
Q 042152            1 MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRPGEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFPKL   80 (256)
Q Consensus         1 F~l~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~   80 (256)
                      |||+|||||.++++++++++++||+||.|+|+++...++..+||+........++.||+|.|.+...|.....+|.||+.
T Consensus        84 F~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~  163 (357)
T PLN02216         84 FQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKL  163 (357)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccc
Confidence            89999999999999999999999999999999998765668899765443445678999999887666555678999986


Q ss_pred             Ccc------------------------cccCCCCCC-cccccc-CceeeeeeeeCCCCccccccccccccCCCcEEEEEe
Q 042152           81 PLP------------------------SALKMDPND-SKQFED-GVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQ  134 (256)
Q Consensus        81 ~~~------------------------~~Lgl~~~~-~~~~~~-~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q  134 (256)
                      ++.                        ++|||++++ .+.+.. ..+.||++|||||++++..+|+++|||+|+||||+|
T Consensus       164 p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q  243 (357)
T PLN02216        164 PLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQ  243 (357)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEe
Confidence            542                        899999888 777765 357899999999999888999999999999999999


Q ss_pred             CCCCCceEEeeCCeeEeccCCCCeEEEEcCchhHHhhCCcccCcCceeccCCCCCeEEEEEeeeCCCCceEecCCCCCCC
Q 042152          135 LNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEIGPAPSLITP  214 (256)
Q Consensus       135 ~~~v~GLqV~~~g~W~~V~p~pg~lvVnvGd~L~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~  214 (256)
                      +++++||||+++|+|++|+|+||+|||||||+||+||||+||||+|||+.++.++||||+||++|+.|++|.|+++|+++
T Consensus       244 ~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~  323 (357)
T PLN02216        244 VNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVER  323 (357)
T ss_pred             cCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCC
Confidence            65799999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             CCCCccccccHHHHHHHHHhcccccCcccceeee
Q 042152          215 ETPALFKKISFVDYTKGFLSRKLQEKSNVDFMRI  248 (256)
Q Consensus       215 ~~~~~y~~~~~~ey~~~~~~~~~~~~~~~~~~~~  248 (256)
                      ++|++|++++++||+..+++....+++.++.++|
T Consensus       324 ~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        324 QKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CCCCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            9999999999999999999998888998888875

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-35
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-35
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-33
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-21
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-09
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 7e-05
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 8e-05
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (363), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 142/271 (52%), Gaps = 32/271 (11%)
Query: 1   MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFW--QRPGEIEGFGQNFVVSKEQKLDW 58
           M L +HG+ + L+E+V     +FF L +EE+EK+   Q  G+I+G+G     +   +L+W
Sbjct: 80  MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEW 139
Query: 59  GYGFTMFSLPALLRKPHLFPKLP------------------------LPSALKMDPNDSK 94
              F   + P   R   ++PK P                        L   L ++P+  +
Sbjct: 140 EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 199
Query: 95  Q----FEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRV 150
           +     E+ +  M++NYYP C Q E  +G   HTD SALT +L  N + GLQ+  +G  V
Sbjct: 200 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWV 258
Query: 151 PVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEI-GPAP 209
             K +PD+ ++++G+ LEIL+NG Y+SI+HR  VN EK R+S+A F     D  +  P P
Sbjct: 259 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 318
Query: 210 SLITPETPALFKKISFVDYTKGFLSRKLQEK 240
            +++ E+PA F   +F  + +  L  K QE+
Sbjct: 319 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query256
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-102
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-98
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-54
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-46
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-42
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  301 bits (772), Expect = e-102
 Identities = 89/282 (31%), Positives = 145/282 (51%), Gaps = 36/282 (12%)

Query: 1   MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFW--QRPGEIEGFGQNFVVSKEQKLDW 58
           M L +HG+ + L+E+V     +FF L +EE+EK+   Q  G+I+G+G     +   +L+W
Sbjct: 80  MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEW 139

Query: 59  GYGFTMFSLPALLRKPHLFPKLP------------------------LPSALKMDPNDSK 94
              F   + P   R   ++PK P                        L   L ++P+  +
Sbjct: 140 EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 199

Query: 95  QF----EDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRV 150
           +     E+ +  M++NYYP C Q E  +G   HTD SALT +L  N + GLQ+  +G  V
Sbjct: 200 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWV 258

Query: 151 PVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDG-EIGPAP 209
             K +PD+ ++++G+ LEIL+NG Y+SI+HR  VN EK R+S+A F     D   + P P
Sbjct: 259 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 318

Query: 210 SLITPETPALFKKISFVDYTKGFLSRKLQEKSNVDFMRIENE 251
            +++ E+PA F   +F  +    +  KL  K   + +  +N+
Sbjct: 319 EMVSVESPAKFPPRTFAQH----IEHKLFGKEQEELVSEKND 356
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 93.95
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.52
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 92.64
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 88.67
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 88.46
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 85.61
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 82.97
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-67  Score=475.99  Aligned_cols=240  Identities=36%  Similarity=0.652  Sum_probs=217.5

Q ss_pred             CEEeccCCCHHHHHHHHHHHHHHhCCCHHHHhccccCC--CceeeccccccccccccCCcccccccccCcccccCCCCCC
Q 042152            1 MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRP--GEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFP   78 (256)
Q Consensus         1 F~l~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP   78 (256)
                      |||+||||+.++++++++++++||+||.|+|+++....  ..++||+........+..||+|.|.++..|.....+|.||
T Consensus        80 F~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP  159 (356)
T 1gp6_A           80 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWP  159 (356)
T ss_dssp             EEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCC
Confidence            89999999999999999999999999999999998764  3689998765555567889999999886665445678999


Q ss_pred             CCCcc------------------------cccCCCCCC-ccccc---cCceeeeeeeeCCCCccccccccccccCCCcEE
Q 042152           79 KLPLP------------------------SALKMDPND-SKQFE---DGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALT  130 (256)
Q Consensus        79 ~~~~~------------------------~~Lgl~~~~-~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lT  130 (256)
                      +.++.                        ++|||++++ .+.+.   .+.+.||++|||||++++..+|+++|||+|+||
T Consensus       160 ~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lT  239 (356)
T 1gp6_A          160 KTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT  239 (356)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEE
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEE
Confidence            86543                        889999998 77776   467899999999999988889999999999999


Q ss_pred             EEEeCCCCCceEEeeCCeeEeccCCCCeEEEEcCchhHHhhCCcccCcCceeccCCCCCeEEEEEeeeCCCCc-eEecCC
Q 042152          131 ILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDG-EIGPAP  209 (256)
Q Consensus       131 lL~q~~~v~GLqV~~~g~W~~V~p~pg~lvVnvGd~L~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~-~i~pl~  209 (256)
                      ||+| |+++||||+++|+|++|+|+||+|||||||+||+||||+||||+|||+.+++.+|||++||++|+.|+ +|.|++
T Consensus       240 lL~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~  318 (356)
T 1gp6_A          240 FILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP  318 (356)
T ss_dssp             EEEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCG
T ss_pred             EEEE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCCh
Confidence            9999 67999999999999999999999999999999999999999999999999889999999999999999 999999


Q ss_pred             CCCCCCCCCccccccHHHHHHHHHhcccccCc
Q 042152          210 SLITPETPALFKKISFVDYTKGFLSRKLQEKS  241 (256)
Q Consensus       210 ~~~~~~~~~~y~~~~~~ey~~~~~~~~~~~~~  241 (256)
                      +|+++++|++|+++|++||+..++..+++++.
T Consensus       319 ~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          319 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             GGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             hhcCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence            99999899999999999999999988766654
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 256
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-40
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-39
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-26
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 6e-19
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  140 bits (354), Expect = 1e-40
 Identities = 86/271 (31%), Positives = 137/271 (50%), Gaps = 32/271 (11%)

Query: 1   MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRP--GEIEGFGQNFVVSKEQKLDW 58
           M L +HG+ + L+E+V     +FF L +EE+EK+      G+I+G+G     +   +L+W
Sbjct: 79  MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEW 138

Query: 59  GYGFTMFSLPALLRKPHLFPKLPLPSA------------------------LKMDPNDS- 93
              F   + P   R   ++PK P                            L ++P+   
Sbjct: 139 EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 198

Query: 94  ---KQFEDGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALTILLQLNEMDGLQIKKDGMRV 150
                 E+ +  M++NYYP C Q E  +G   HTD SALT  +  N + GLQ+  +G  V
Sbjct: 199 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-FILHNMVPGLQLFYEGKWV 257

Query: 151 PVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEI-GPAP 209
             K +PD+ ++++G+ LEIL+NG Y+SI+HR  VN EK R+S+A F     D  +  P P
Sbjct: 258 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 317

Query: 210 SLITPETPALFKKISFVDYTKGFLSRKLQEK 240
            +++ E+PA F   +F  + +  L  K QE+
Sbjct: 318 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 348
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query256
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.56
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 80.43
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-62  Score=440.02  Aligned_cols=234  Identities=36%  Similarity=0.660  Sum_probs=203.9

Q ss_pred             CEEeccCCCHHHHHHHHHHHHHHhCCCHHHHhccccCC--CceeeccccccccccccCCcccccccccCcccccCCCCCC
Q 042152            1 MQLKSHGVSSSLVEKVTAEVHDFFDLPMEEREKFWQRP--GEIEGFGQNFVVSKEQKLDWGYGFTMFSLPALLRKPHLFP   78 (256)
Q Consensus         1 F~l~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP   78 (256)
                      |||+||||+.++++++++++++||+||.|+|+++....  +.+.||+...........+|.+.+.....+.....+|.||
T Consensus        79 f~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp  158 (349)
T d1gp6a_          79 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWP  158 (349)
T ss_dssp             EEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccc
Confidence            79999999999999999999999999999999998653  3456666554444555667766655444444556778999


Q ss_pred             CCCcc------------------------cccCCCCCC-ccccc---cCceeeeeeeeCCCCccccccccccccCCCcEE
Q 042152           79 KLPLP------------------------SALKMDPND-SKQFE---DGVQSMRMNYYPSCQQQEHVIGFNPHTDGSALT  130 (256)
Q Consensus        79 ~~~~~------------------------~~Lgl~~~~-~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lT  130 (256)
                      +.++.                        ++||+++++ .+.+.   ...+.||++|||+++.+...+|+++|||+|+||
T Consensus       159 ~~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lT  238 (349)
T d1gp6a_         159 KTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT  238 (349)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEE
T ss_pred             cccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceE
Confidence            87553                        889999988 65553   346789999999999888889999999999999


Q ss_pred             EEEeCCCCCceEEeeCCeeEeccCCCCeEEEEcCchhHHhhCCcccCcCceeccCCCCCeEEEEEeeeCCCCceE-ecCC
Q 042152          131 ILLQLNEMDGLQIKKDGMRVPVKTLPDTFIINVGENLEILTNGIYRSIVHRATVNSEKARLSFATFYSMKLDGEI-GPAP  209 (256)
Q Consensus       131 lL~q~~~v~GLqV~~~g~W~~V~p~pg~lvVnvGd~L~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~pl~  209 (256)
                      ||+| ++++||||+++|+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++||||+||++|+.|++| .|++
T Consensus       239 lL~q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~  317 (349)
T d1gp6a_         239 FILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP  317 (349)
T ss_dssp             EEEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCG
T ss_pred             EEec-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCH
Confidence            9999 7899999999999999999999999999999999999999999999999998999999999999999865 8999


Q ss_pred             CCCCCCCCCccccccHHHHHHHHHhc
Q 042152          210 SLITPETPALFKKISFVDYTKGFLSR  235 (256)
Q Consensus       210 ~~~~~~~~~~y~~~~~~ey~~~~~~~  235 (256)
                      +|+++++|++|+|+|++||++.|+..
T Consensus       318 ~~v~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         318 EMVSVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             GGCCSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             HHcCCCCCCCCCCccHHHHHHHHHhc
Confidence            99999999999999999999998854
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure