Citrus Sinensis ID: 042187


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
MENRPCFNIFRSLIFLLSRKVSLAADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSSQ
ccccccHHHHHHHHHHHcccccccccccccccccccccEEEccccEEEEEEEccccccccEEEEEEcccccEEEEEcccccccccccEEEEEcccccEEEEcccccEEEEcccccc
cccHHHHHHHHHHHHHcccHHEEEccccccccEcccccEEEccccEEEEEEEcccccccEEEEEEEEEcccEEEEEEEcccccccccEEEEEEccccEEEEcccccEEEEcccccc
MENRPCFNIFRSLIFLLSRKVslaadtltpasfirdgeKLVSSAQRfelgffspgksknryvglwyqkipdtvfwvanrnspisdhnavltisnngnlvllnqtngtiwstnvssq
MENRPCFNIFRSLIFLLSRKVSLAADTLTPASFIRDGEKLVSSAQRFElgffspgksknryVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNlvllnqtngtiwstnvssq
MENRPCFNIFRSLIFLLSRKVSLAADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSSQ
*****CFNIFRSLIFLLSRKVSLAADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWS******
***RPCFNIFRSLIFLLSRKVSLAADTLTPASFIRD**KLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTN****
MENRPCFNIFRSLIFLLSRKVSLAADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSSQ
**NRPCFNIFRSLIFLLSRKVSLAADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWST*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENRPCFNIFRSLIFLLSRKVSLAADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query116 2.2.26 [Sep-21-2011]
O81906 849 G-type lectin S-receptor- yes no 0.887 0.121 0.495 1e-22
Q9SY89 842 Putative G-type lectin S- no no 0.896 0.123 0.485 1e-21
O81832 783 G-type lectin S-receptor- no no 0.879 0.130 0.466 7e-20
Q9SXB5 820 G-type lectin S-receptor- no no 0.948 0.134 0.442 2e-19
Q9LPZ9 830 G-type lectin S-receptor- no no 0.836 0.116 0.469 2e-18
Q9ZT07 833 G-type lectin S-receptor- no no 0.793 0.110 0.473 8e-18
O64783 814 G-type lectin S-receptor- no no 0.870 0.124 0.450 1e-17
Q9SXB4 820 G-type lectin S-receptor- no no 0.862 0.121 0.446 3e-17
Q9SXB8 842 G-type lectin S-receptor- no no 0.836 0.115 0.450 4e-17
Q9SY95 802 G-type lectin S-receptor- no no 0.905 0.130 0.424 1e-16
>sp|O81906|B120_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1 Back     alignment and function desciption
 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 4/107 (3%)

Query: 13  LIFLLSRKVSLAADTLTPASFIRDG---EKLVSSAQRFELGFFSPGKSKNRYVGLWYQKI 69
            ++    + S+AA+T+     +RDG   + LVS  + FELGFFSPG S +R++G+WY  I
Sbjct: 14  FLYFFLYESSMAANTIRRGESLRDGINHKPLVSPQKTFELGFFSPGSSTHRFLGIWYGNI 73

Query: 70  PD-TVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSS 115
            D  V WVANR +PISD + VL ISN+GNLVLL+  N T+WS+N+ S
Sbjct: 74  EDKAVVWVANRATPISDQSGVLMISNDGNLVLLDGKNITVWSSNIES 120





Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|Q9SY89|Y1661_ARATH Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 OS=Arabidopsis thaliana GN=At1g61610 PE=2 SV=1 Back     alignment and function description
>sp|O81832|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4 Back     alignment and function description
>sp|Q9SXB5|Y1135_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11305 OS=Arabidopsis thaliana GN=At1g11305 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPZ9|SD113_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 OS=Arabidopsis thaliana GN=SD113 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZT07|RKS1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=2 SV=3 Back     alignment and function description
>sp|O64783|Y1137_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 OS=Arabidopsis thaliana GN=At1g61370 PE=3 SV=2 Back     alignment and function description
>sp|Q9SXB4|Y1130_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 OS=Arabidopsis thaliana GN=At1g11300 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXB8|Y1133_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3 Back     alignment and function description
>sp|Q9SY95|Y1155_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61550 OS=Arabidopsis thaliana GN=At1g61550 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query116
359493711 1081 PREDICTED: G-type lectin S-receptor-like 0.956 0.102 0.576 7e-29
224115098 802 predicted protein [Populus trichocarpa] 0.887 0.128 0.563 2e-26
359493725 1593 PREDICTED: uncharacterized protein LOC10 0.956 0.069 0.491 8e-25
255587574 500 S-locus-specific glycoprotein S6 precurs 0.870 0.202 0.527 1e-24
2181190 850 serine/threonine kinase [Brassica olerac 0.913 0.124 0.554 3e-24
312162749 849 unknown [Arabidopsis lyrata] 0.887 0.121 0.560 9e-24
357488477 816 Cysteine-rich receptor-like protein kina 0.913 0.129 0.559 1e-23
312162771 849 unknown [Arabidopsis lyrata] 0.913 0.124 0.545 2e-23
312162761 849 unknown [Arabidopsis lyrata] 0.887 0.121 0.551 2e-23
224122978 831 predicted protein [Populus trichocarpa] 0.862 0.120 0.534 3e-23
>gi|359493711|ref|XP_002281022.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 81/118 (68%), Gaps = 7/118 (5%)

Query: 1   MENRPCFNIFRSLI----FLLSRKVSLAADTLTPASFIRDGEKLVSSAQRFELGFFSPGK 56
           ME  P F  F SLI    FL   K  +A+DT+TP   + DGE LVSS QRFELGFFSP  
Sbjct: 1   MEGLPFFTFFCSLISSSIFL---KFCVASDTITPTQSMVDGETLVSSGQRFELGFFSPEN 57

Query: 57  SKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVS 114
           SKNRY+G+WY+  P TV WVANRN+PI+D + VLTIS NG LVLLNQ    +W + +S
Sbjct: 58  SKNRYLGIWYKSAPHTVVWVANRNNPITDSHGVLTISINGTLVLLNQEGSVVWYSGLS 115




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115098|ref|XP_002316939.1| predicted protein [Populus trichocarpa] gi|222860004|gb|EEE97551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493725|ref|XP_002280679.2| PREDICTED: uncharacterized protein LOC100260657 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255587574|ref|XP_002534317.1| S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis] gi|223525509|gb|EEF28066.1| S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|2181190|emb|CAA73134.1| serine/threonine kinase [Brassica oleracea] Back     alignment and taxonomy information
>gi|312162749|gb|ADQ37364.1| unknown [Arabidopsis lyrata] Back     alignment and taxonomy information
>gi|357488477|ref|XP_003614526.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355515861|gb|AES97484.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|312162771|gb|ADQ37384.1| unknown [Arabidopsis lyrata] Back     alignment and taxonomy information
>gi|312162761|gb|ADQ37375.1| unknown [Arabidopsis lyrata] Back     alignment and taxonomy information
>gi|224122978|ref|XP_002330411.1| predicted protein [Populus trichocarpa] gi|222871796|gb|EEF08927.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query116
TAIR|locus:2141176 849 B120 [Arabidopsis thaliana (ta 0.931 0.127 0.486 1.1e-21
TAIR|locus:2200908 842 AT1G61610 [Arabidopsis thalian 0.982 0.135 0.470 5e-21
TAIR|locus:2131684 783 AT4G27290 [Arabidopsis thalian 0.922 0.136 0.463 4e-20
TAIR|locus:2200151 830 SD1-13 "S-domain-1 13" [Arabid 0.931 0.130 0.440 5.3e-19
TAIR|locus:2200888 804 AT1G61500 [Arabidopsis thalian 0.913 0.131 0.432 6.4e-19
TAIR|locus:2197734 814 AT1G61370 [Arabidopsis thalian 0.870 0.124 0.450 7.7e-18
TAIR|locus:2018546 843 RK1 "receptor kinase 1" [Arabi 0.922 0.126 0.431 3.6e-17
TAIR|locus:2200923 802 AT1G61550 [Arabidopsis thalian 0.853 0.123 0.485 6.9e-17
TAIR|locus:2059103 828 AT2G19130 [Arabidopsis thalian 0.801 0.112 0.427 3.2e-16
TAIR|locus:2197704 831 AT1G61390 [Arabidopsis thalian 0.879 0.122 0.451 6.7e-16
TAIR|locus:2141176 B120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 264 (98.0 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 55/113 (48%), Positives = 78/113 (69%)

Query:     8 NIFRSL-IFLLSRKVSLAADTLTPASFIRDG---EKLVSSAQRFELGFFSPGKSKNRYVG 63
             +++ SL ++    + S+AA+T+     +RDG   + LVS  + FELGFFSPG S +R++G
Sbjct:     8 SLYLSLFLYFFLYESSMAANTIRRGESLRDGINHKPLVSPQKTFELGFFSPGSSTHRFLG 67

Query:    64 LWYQKIPD-TVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSS 115
             +WY  I D  V WVANR +PISD + VL ISN+GNLVLL+  N T+WS+N+ S
Sbjct:    68 IWYGNIEDKAVVWVANRATPISDQSGVLMISNDGNLVLLDGKNITVWSSNIES 120




GO:0004672 "protein kinase activity" evidence=IEA;ISS
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA;ISS
GO:0048544 "recognition of pollen" evidence=IEA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0006979 "response to oxidative stress" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2200908 AT1G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131684 AT4G27290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200151 SD1-13 "S-domain-1 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200888 AT1G61500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197734 AT1G61370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200923 AT1G61550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197704 AT1G61390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00027535001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (308 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query116
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 1e-23
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 3e-22
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 2e-13
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
 Score = 87.4 bits (217), Expect = 1e-23
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 34  IRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTIS 93
           +  G+ LVSS   FELGFF        Y  + Y+    TV WVANR++P S  +  LT+ 
Sbjct: 4   LSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSSRTVVWVANRDNP-SGSSCTLTLQ 62

Query: 94  NNGNLVLLNQTNGTIWSTNVSSQ 116
           ++GNLV+ + +   +WS+N +  
Sbjct: 63  SDGNLVIYDGSGTVVWSSNTTRV 85


The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses. Length = 116

>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 116
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.75
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.73
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.1
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 98.43
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 98.41
smart00108114 B_lectin Bulb-type mannose-specific lectin. 98.3
PF0143628 NHL: NHL repeat; InterPro: IPR001258 The NHL repea 82.5
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
Probab=99.75  E-value=2.3e-17  Score=112.01  Aligned_cols=83  Identities=36%  Similarity=0.651  Sum_probs=70.9

Q ss_pred             CccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEee
Q 042187           32 SFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWST  111 (116)
Q Consensus        32 ~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWss  111 (116)
                      +.|..+++|+|+++.|++|||.+......+.+|||...+.++||.+|++.|. ...+.|.|++||+|+|+|.++.++|++
T Consensus         2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~~vW~S   80 (116)
T cd00028           2 NPLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSSRTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGTVVWSS   80 (116)
T ss_pred             cCcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCCCeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCcEEEEe
Confidence            4678899999999999999999873223788999987546899999999983 356789999999999999999999999


Q ss_pred             cCCC
Q 042187          112 NVSS  115 (116)
Q Consensus       112 n~~~  115 (116)
                      ++.+
T Consensus        81 ~~~~   84 (116)
T cd00028          81 NTTR   84 (116)
T ss_pred             cccC
Confidence            9864



The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.

>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query116
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 8e-06
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 1e-05
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 5e-05
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 7e-05
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 7e-05
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 8e-05
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 1e-04
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 3e-04
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
 Score = 40.7 bits (95), Expect = 8e-06
 Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 23/109 (21%)

Query: 25  ADTLTPASFIRDGEKLVSSAQRFELGFFSPG--------------KSKNRYVGLWYQKIP 70
           +D L     +  G  L      +     +                 +  +  G   +   
Sbjct: 1   SDRLNSGHQLDTGGSLAE--GGYLFIIQNDCNLVLYDNNRAVWASGTNGKASGCVLKMQN 58

Query: 71  DTVFWVANRNSPI-------SDHNAVLTISNNGNLVLLNQTNGTIWSTN 112
           D    + + +  I        + N  L +  + N+V+ + +N  IW+T+
Sbjct: 59  DGNLVIYSGSRAIWASNTNRQNGNYYLILQRDRNVVIYDNSNNAIWATH 107


>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query116
3m7h_A 276 Putidacin L1; monocot mannose-binding lectin, bact 99.83
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.77
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.76
1dlp_A 236 Lectin scafet precursor; two-domain lectin, beta p 99.66
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.65
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.64
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.6
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.57
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.54
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.53
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.42
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.29
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 98.62
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 97.9
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 97.8
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 97.55
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 97.53
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 97.51
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 97.49
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 97.47
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 97.34
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 97.0
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 96.6
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 96.46
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=99.83  E-value=9.5e-22  Score=150.34  Aligned_cols=86  Identities=23%  Similarity=0.344  Sum_probs=73.7

Q ss_pred             ccccccccCCCCccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCC-CeEEEEecCCCCCCCC----cceEEEecC
Q 042187           21 VSLAADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIP-DTVFWVANRNSPISDH----NAVLTISNN   95 (116)
Q Consensus        21 ~~~a~~tl~~G~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~-~tvvW~Anr~~pv~~~----~~~L~l~~d   95 (116)
                      ++++.|+|.+|++|+.|++|+|++|.|+||||.++   +.|+   |+  + + +||+|||+.|+.+.    ++.|+|+.|
T Consensus        10 ~~~~~~~l~~g~~l~~~~~l~S~~g~F~lgf~~~~---~~~l---y~--~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~   80 (276)
T 3m7h_A           10 NGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDG---NLVI---QD--NGA-TVWVANEQQPFSSTIPLRNKKAPLAFY   80 (276)
T ss_dssp             CCTTSSEECTTEEBCTTCEEECTTSSEEEEECTTS---CEEE---EE--TTE-EEEECSTTSTTEEEEECCCTTCCSEEE
T ss_pred             ccccCCEecCCCEecCCCEEEcCCCcEEEEEECCC---CeEE---EC--CCC-eEEECCCCCCcCCcccccceEEEEeCC
Confidence            35667999999999999999999999999999432   4565   65  5 6 99999999999764    678999999


Q ss_pred             CcEEE--EcCCCcEEEeecCCC
Q 042187           96 GNLVL--LNQTNGTIWSTNVSS  115 (116)
Q Consensus        96 G~LvL--~d~~~~~vWssn~~~  115 (116)
                      |+|+|  .|+++.+||++++++
T Consensus        81 G~Lvl~~~~~~~~~vWst~~~~  102 (276)
T 3m7h_A           81 VQYGAFLDDYSRRRVWLTDNST  102 (276)
T ss_dssp             ESSSEEEEEGGGTEEEEECCCC
T ss_pred             CcEEEEEeCCCCCEEEEeCCCc
Confidence            99999  788889999999753



>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 116
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 2e-10
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 1e-05
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 5e-04
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 9e-05
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 7e-04
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 0.001
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]
 Score = 51.5 bits (123), Expect = 2e-10
 Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 34  IRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTIS 93
           + +GE L  + Q  ++  +     ++  + L+      T  W +N             + 
Sbjct: 4   LTNGEGL-YAGQSLDVEPYHFIMQEDCNLVLYD---HSTSVWASNTGILG-KKGCKAVLQ 58

Query: 94  NNGNLVLLNQTNGTIWSTNVSS 115
           ++GN V+ +    ++W+++   
Sbjct: 59  SDGNFVVYDAEGRSLWASHSVR 80


>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query116
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.68
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.64
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.6
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.32
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.01
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 98.75
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 98.57
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 98.02
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 97.93
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 97.91
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 97.6
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 97.32
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.68  E-value=1.9e-16  Score=104.46  Aligned_cols=79  Identities=15%  Similarity=0.317  Sum_probs=67.6

Q ss_pred             ccccCCCCccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCC
Q 042187           25 ADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQT  104 (116)
Q Consensus        25 ~~tl~~G~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~  104 (116)
                      +|+|.+||.|.+|++|.  +|.|.|+|+.+++     |.++..   .++||+||++.|.. ..+.|.|++||+|+|+|++
T Consensus         1 ~~~L~~g~~L~~g~~l~--~g~~~l~~q~dgn-----Lvl~~~---~~~vW~ant~~~~~-~~~~l~l~~dGnLvl~~~~   69 (109)
T d1kj1a_           1 RNLLTNGEGLYAGQSLD--VEPYHFIMQEDCN-----LVLYDH---STSVWASNTGILGK-KGCKAVLQSDGNFVVYDAE   69 (109)
T ss_dssp             CCEEETTCEEETTCEEE--ETTEEEEECTTSC-----EEEEET---TEEEEECCCCCTTC-CCCEEEECTTSCEEEECSS
T ss_pred             CCCccCCCEEeCCCEEE--eCCEEEEecCCCe-----EEEEeC---CEEEEEeCCCCCCc-eeEEEEEcCCceEEEEeCC
Confidence            47899999999999996  4889999988775     445443   68999999999865 4678999999999999999


Q ss_pred             CcEEEeecCC
Q 042187          105 NGTIWSTNVS  114 (116)
Q Consensus       105 ~~~vWssn~~  114 (116)
                      +++||++++.
T Consensus        70 g~~vW~s~t~   79 (109)
T d1kj1a_          70 GRSLWASHSV   79 (109)
T ss_dssp             SCEEEECCCC
T ss_pred             CcEEEEEeeE
Confidence            9999999875



>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure