Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value
Query 116
cd00028 116
cd00028, B_lectin, Bulb-type mannose-specific lect
1e-23
smart00108 114
smart00108, B_lectin, Bulb-type mannose-specific l
3e-22
pfam01453 109
pfam01453, B_lectin, D-mannose binding lectin
2e-13
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin
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Score = 87.4 bits (217), Expect = 1e-23
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 34 IRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTIS 93
+ G+ LVSS FELGFF Y + Y+ TV WVANR++P S + LT+
Sbjct: 4 LSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSSRTVVWVANRDNP-SGSSCTLTLQ 62
Query: 94 NNGNLVLLNQTNGTIWSTNVSSQ 116
++GNLV+ + + +WS+N +
Sbjct: 63 SDGNLVIYDGSGTVVWSSNTTRV 85
The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses. Length = 116
>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin
Back Show alignment and domain information
Score = 83.9 bits (208), Expect = 3e-22
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 32 SFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLT 91
+ + G+ LVS FELGFF+ +N Y + Y+ TV WVANR++P+SD + LT
Sbjct: 2 NTLSSGQTLVSGNSLFELGFFTLI-MQNDYNLILYKSSSRTVVWVANRDNPVSD-SCTLT 59
Query: 92 ISNNGNLVLLNQTNGTIWSTNVSS 115
+ ++GNLVL + +WS+N +
Sbjct: 60 LQSDGNLVLYDGDGRVVWSSNTTG 83
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin
Back Show alignment and domain information
Score = 60.8 bits (148), Expect = 2e-13
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 70 PDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSSQ 116
TV WVANR +P++D + L + ++GNLVL + +WS+N S +
Sbjct: 1 NQTVVWVANRLNPLTDSSYTLILQSDGNLVLYDGNGRVVWSSNTSGK 47
These proteins include mannose-specific lectins from plants as well as bacteriocins from bacteria. Length = 109
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
116
cd00028 116
B_lectin Bulb-type mannose-specific lectin. The do
99.75
smart00108 114
B_lectin Bulb-type mannose-specific lectin.
99.73
PF01453 114
B_lectin: D-mannose binding lectin; InterPro: IPR0
99.1
cd00028 116
B_lectin Bulb-type mannose-specific lectin. The do
98.43
PF01453 114
B_lectin: D-mannose binding lectin; InterPro: IPR0
98.41
smart00108 114
B_lectin Bulb-type mannose-specific lectin.
98.3
PF01436 28
NHL: NHL repeat; InterPro: IPR001258 The NHL repea
82.5
>cd00028 B_lectin Bulb-type mannose-specific lectin
Back Hide alignment and domain information
Probab=99.75 E-value=2.3e-17 Score=112.01 Aligned_cols=83 Identities=36% Similarity=0.651 Sum_probs=70.9
Q ss_pred CccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEee
Q 042187 32 SFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWST 111 (116)
Q Consensus 32 ~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWss 111 (116)
+.|..+++|+|+++.|++|||.+......+.+|||...+.++||.+|++.|. ...+.|.|++||+|+|+|.++.++|++
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~~vW~S 80 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSSRTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGTVVWSS 80 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCCCeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCcEEEEe
Confidence 4678899999999999999999873223788999987546899999999983 356789999999999999999999999
Q ss_pred cCCC
Q 042187 112 NVSS 115 (116)
Q Consensus 112 n~~~ 115 (116)
++.+
T Consensus 81 ~~~~ 84 (116)
T cd00028 81 NTTR 84 (116)
T ss_pred cccC
Confidence 9864
The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
>smart00108 B_lectin Bulb-type mannose-specific lectin
Back Show alignment and domain information
Probab=99.73 E-value=5.2e-17 Score=109.86 Aligned_cols=81 Identities=41% Similarity=0.742 Sum_probs=70.4
Q ss_pred CccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEee
Q 042187 32 SFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWST 111 (116)
Q Consensus 32 ~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWss 111 (116)
+.|..++.|+|+++.|++|||.+.. ...+.+|||...++++||.|||+.|+.. .+.|.|++||+|+|+|.++.++|++
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~-q~dgnlV~~~~~~~~~vW~snt~~~~~~-~~~l~l~~dGnLvl~~~~g~~vW~S 79 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIM-QNDYNLILYKSSSRTVVWVANRDNPVSD-SCTLTLQSDGNLVLYDGDGRVVWSS 79 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCC-CCCEEEEEEECCCCcEEEECCCCCCCCC-CEEEEEeCCCCEEEEeCCCCEEEEe
Confidence 5678899999999999999999863 4568889998744579999999999764 4789999999999999999999999
Q ss_pred cCC
Q 042187 112 NVS 114 (116)
Q Consensus 112 n~~ 114 (116)
++.
T Consensus 80 ~t~ 82 (114)
T smart00108 80 NTT 82 (114)
T ss_pred ccc
Confidence 985
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity
Back Show alignment and domain information
Probab=99.10 E-value=4.6e-11 Score=81.26 Aligned_cols=45 Identities=49% Similarity=0.869 Sum_probs=28.5
Q ss_pred CeEEEEecCCCCCCCC--cceEEEecCCcEEEEcCCCcEEEee-cCCC
Q 042187 71 DTVFWVANRNSPISDH--NAVLTISNNGNLVLLNQTNGTIWST-NVSS 115 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~--~~~L~l~~dG~LvL~d~~~~~vWss-n~~~ 115 (116)
+++||+|||+.|+... ..+|.|++||+|+|+|.+++.+|++ ++.|
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~ 49 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSG 49 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TT
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCC
Confidence 5899999999998532 3789999999999999888889999 5543
Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
>cd00028 B_lectin Bulb-type mannose-specific lectin
Back Show alignment and domain information
Probab=98.43 E-value=9e-07 Score=59.81 Aligned_cols=41 Identities=32% Similarity=0.600 Sum_probs=33.6
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeecC
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNV 113 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn~ 113 (116)
..++|..+... ......+.|++||||+|++.++.+||+|.+
T Consensus 74 g~~vW~S~~~~--~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~ 114 (116)
T cd00028 74 GTVVWSSNTTR--VNGNYVLVLLDDGNLVLYDSDGNFLWQSFD 114 (116)
T ss_pred CcEEEEecccC--CCCceEEEEeCCCCEEEECCCCCEEEcCCC
Confidence 46799988765 123467999999999999999999999975
The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity
Back Show alignment and domain information
Probab=98.41 E-value=2.1e-06 Score=58.25 Aligned_cols=67 Identities=25% Similarity=0.497 Sum_probs=48.2
Q ss_pred CeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEe-cCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeec
Q 042187 38 EKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVA-NRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTN 112 (116)
Q Consensus 38 ~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~A-nr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn 112 (116)
+.+.+.++.+.|-|..+++ |.++... .+++|.. +...... ..+.+.|++||||+|+|.++.++|++.
T Consensus 12 ~p~~~~s~~~~L~l~~dGn-----Lvl~~~~--~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW~Sf 79 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGN-----LVLYDSN--GSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLWQSF 79 (114)
T ss_dssp EEEEECETTEEEEEETTSE-----EEEEETT--TEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEEEST
T ss_pred cccccccccccceECCCCe-----EEEEcCC--CCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEEeec
Confidence 4555655899999988764 4344332 5789999 4444422 467899999999999999999999985
Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
>smart00108 B_lectin Bulb-type mannose-specific lectin
Back Show alignment and domain information
Probab=98.30 E-value=3.3e-06 Score=56.79 Aligned_cols=41 Identities=27% Similarity=0.584 Sum_probs=33.0
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeecC
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNV 113 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn~ 113 (116)
..++|..+.... .....+.|++||||+|+|.+++++|+|..
T Consensus 73 g~~vW~S~t~~~--~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~ 113 (114)
T smart00108 73 GRVVWSSNTTGA--NGNYVLVLLDDGNLVIYDSDGNFLWQSFD 113 (114)
T ss_pred CCEEEEecccCC--CCceEEEEeCCCCEEEECCCCCEEeCCCC
Confidence 468999887621 22457999999999999999999999864
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins
Back Show alignment and domain information
Probab=82.50 E-value=2.9 Score=21.03 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=17.2
Q ss_pred eEEEecCCcEEEEcCCCcEEE
Q 042187 89 VLTISNNGNLVLLNQTNGTIW 109 (116)
Q Consensus 89 ~L~l~~dG~LvL~d~~~~~vW 109 (116)
.+.++.+|++++.|.++.-||
T Consensus 6 gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEE
T ss_pred EEEEeCCCCEEEEECCCCEEE
Confidence 377778999999998877776
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value
Query
116
d1kj1a_ 109
b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium
2e-10
d1dlpa2 120
b.78.1.1 (A:116-235) Fetuin-binding protein Scafet
1e-05
d1dlpa2 120
b.78.1.1 (A:116-235) Fetuin-binding protein Scafet
5e-04
d1dlpa1 115
b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p
9e-05
d1b2pa_ 119
b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill
7e-04
d1xd5a_ 112
b.78.1.1 (A:) Gastrodianin (antifungal protein) {G
0.001
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109
Back Hide information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]
Score = 51.5 bits (123), Expect = 2e-10
Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 34 IRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTIS 93
+ +GE L + Q ++ + ++ + L+ T W +N +
Sbjct: 4 LTNGEGL-YAGQSLDVEPYHFIMQEDCNLVLYD---HSTSVWASNTGILG-KKGCKAVLQ 58
Query: 94 NNGNLVLLNQTNGTIWSTNVSS 115
++GN V+ + ++W+++
Sbjct: 59 SDGNFVVYDAEGRSLWASHSVR 80
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Score = 39.1 bits (91), Expect = 1e-05
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 65 WYQKIP-DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSSQ 116
Y D + + L++ + NLVL ++ + +WSTN + +
Sbjct: 13 LYSTQGNDNHPQTLHATQSLQLSPYRLSMETDCNLVLFDR-DDRVWSTNTAGK 64
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Score = 34.9 bits (80), Expect = 5e-04
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 27 TLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDH 86
L + + + + Q +L + + + L+ + V + N+
Sbjct: 12 ILYSTQGNDNHPQTLHATQSLQLSPYRLSMETDCNLVLFDRDDR-----VWSTNTAGKGT 66
Query: 87 NAVLTISNNGNLVLLNQTNGTIWSTNVSS 115
+ NG + +L N +W++ S
Sbjct: 67 GCRAVLQPNGRMDVLTNQNIAVWTSGNSR 95
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Score = 36.8 bits (85), Expect = 9e-05
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 64 LWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSSQ 116
L+ + + + + T+ ++ NLVL + + +W++N +
Sbjct: 4 LFGLSHEGSHPQTLHAAQSLELSSFRFTMQSDCNLVLFDS-DVRVWASNTAGA 55
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Score = 34.6 bits (79), Expect = 7e-04
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 40 LVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLV 99
++ + + V + W N + + +G LV
Sbjct: 25 ILFGTHVYRFIMQTDC----NLVLYD----NNNPIWATNTGGL--GNGCRAVLQPDGVLV 74
Query: 100 LLNQTNGTIWSTNVSS 115
++ N T+W + V+
Sbjct: 75 VITNENVTVWQSPVAG 90
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Gastrodianin (antifungal protein)
species: Gastrodia elata [TaxId: 91201]
Score = 33.6 bits (76), Expect = 0.001
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 23/109 (21%)
Query: 25 ADTLTPASFIRDGEKLVSSAQRFELGFFSPGKS--KNRYVGLWYQ--------------- 67
+D L + G L + + + +W
Sbjct: 1 SDRLNSGHQLDTGGSLAEG--GYLFIIQNDCNLVLYDNNRAVWASGTNGKASGCVLKMQN 58
Query: 68 ----KIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTN 112
I + N+ + N L + + N+V+ + +N IW+T+
Sbjct: 59 DGNLVIYSGSRAIWASNTNRQNGNYYLILQRDRNVVIYDNSNNAIWATH 107
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 116
d1kj1a_ 109
Lectin (agglutinin) {Garlic (Allium sativum) [TaxI
99.68
d1jpca_ 108
Lectin (agglutinin) {Snowdrop (Galanthus nivalis)
99.64
d1xd5a_ 112
Gastrodianin (antifungal protein) {Gastrodia elata
99.6
d1b2pa_ 119
Lectin (agglutinin) {Bluebell (Scilla campanulata)
99.32
d1dlpa1 115
Fetuin-binding protein Scafet precursor {Bluebell
99.01
d1dlpa2 120
Fetuin-binding protein Scafet precursor {Bluebell
98.75
d1dlpa2 120
Fetuin-binding protein Scafet precursor {Bluebell
98.57
d1dlpa1 115
Fetuin-binding protein Scafet precursor {Bluebell
98.02
d1jpca_ 108
Lectin (agglutinin) {Snowdrop (Galanthus nivalis)
97.93
d1xd5a_ 112
Gastrodianin (antifungal protein) {Gastrodia elata
97.91
d1kj1a_ 109
Lectin (agglutinin) {Garlic (Allium sativum) [TaxI
97.6
d1b2pa_ 119
Lectin (agglutinin) {Bluebell (Scilla campanulata)
97.32
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]}
Back Hide information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.68 E-value=1.9e-16 Score=104.46 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=67.6
Q ss_pred ccccCCCCccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCC
Q 042187 25 ADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQT 104 (116)
Q Consensus 25 ~~tl~~G~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~ 104 (116)
+|+|.+||.|.+|++|. +|.|.|+|+.+++ |.++.. .++||+||++.|.. ..+.|.|++||+|+|+|++
T Consensus 1 ~~~L~~g~~L~~g~~l~--~g~~~l~~q~dgn-----Lvl~~~---~~~vW~ant~~~~~-~~~~l~l~~dGnLvl~~~~ 69 (109)
T d1kj1a_ 1 RNLLTNGEGLYAGQSLD--VEPYHFIMQEDCN-----LVLYDH---STSVWASNTGILGK-KGCKAVLQSDGNFVVYDAE 69 (109)
T ss_dssp CCEEETTCEEETTCEEE--ETTEEEEECTTSC-----EEEEET---TEEEEECCCCCTTC-CCCEEEECTTSCEEEECSS
T ss_pred CCCccCCCEEeCCCEEE--eCCEEEEecCCCe-----EEEEeC---CEEEEEeCCCCCCc-eeEEEEEcCCceEEEEeCC
Confidence 47899999999999996 4889999988775 445443 68999999999865 4678999999999999999
Q ss_pred CcEEEeecCC
Q 042187 105 NGTIWSTNVS 114 (116)
Q Consensus 105 ~~~vWssn~~ 114 (116)
+++||++++.
T Consensus 70 g~~vW~s~t~ 79 (109)
T d1kj1a_ 70 GRSLWASHSV 79 (109)
T ss_dssp SCEEEECCCC
T ss_pred CcEEEEEeeE
Confidence 9999999875
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Snowdrop (Galanthus nivalis) [TaxId: 4670]
Probab=99.64 E-value=5.8e-16 Score=101.77 Aligned_cols=78 Identities=24% Similarity=0.419 Sum_probs=67.2
Q ss_pred cccCCCCccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCC
Q 042187 26 DTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTN 105 (116)
Q Consensus 26 ~tl~~G~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~ 105 (116)
|+|.+||.|..|++|. +|.|+|.|+.+++ |.++.. .++||.+|++.|- ..+.+.++.||+|+|+|+++
T Consensus 2 ~~L~~g~~L~~G~~l~--ng~~~l~~q~DGN-----Lvly~~---~~~vW~s~~~~~~--~~~~l~l~~~Gnlvl~~~~g 69 (108)
T d1jpca_ 2 NILYSGETLSTGEFLN--YGSFVFIMQEDCN-----LVLYDV---DKPIWATNTGGLS--RSCFLSMQTDGNLVVYNPSN 69 (108)
T ss_dssp CEEETTEEECTTCEEE--ETTEEEEECTTSC-----EEEEET---TEEEEECCCTTSC--SSCEEEECTTSCEEEECTTC
T ss_pred CCccCCCEecCCCEEE--cCCEEEEECCCCe-----EEEEeC---CceeeEeCCCCCC--CccEEEEeccceEEEECCCc
Confidence 7899999999999995 6999999999875 556654 6899999999883 45689999999999999999
Q ss_pred cEEEeecCCC
Q 042187 106 GTIWSTNVSS 115 (116)
Q Consensus 106 ~~vWssn~~~ 115 (116)
.+||++++.+
T Consensus 70 ~~vWsS~t~~ 79 (108)
T d1jpca_ 70 KPIWASNTGG 79 (108)
T ss_dssp CEEEECCCCC
T ss_pred cceEEccccC
Confidence 9999998643
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Gastrodianin (antifungal protein)
species: Gastrodia elata [TaxId: 91201]
Probab=99.60 E-value=3.2e-15 Score=98.37 Aligned_cols=77 Identities=23% Similarity=0.464 Sum_probs=59.6
Q ss_pred ccccCCCCccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCC
Q 042187 25 ADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQT 104 (116)
Q Consensus 25 ~~tl~~G~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~ 104 (116)
+|+|.|||.|..|++|++ |.|+|.|+.+++ |.+++. .++||.++++.+.. .+.+.|+.||+|+|+|.
T Consensus 1 tDtL~~gq~L~~g~~l~~--g~~~l~~q~DGN-----Lvly~~---~~~vW~s~~~~~~~--~~~l~l~~dGnLvl~~~- 67 (112)
T d1xd5a_ 1 SDRLNSGHQLDTGGSLAE--GGYLFIIQNDCN-----LVLYDN---NRAVWASGTNGKAS--GCVLKMQNDGNLVIYSG- 67 (112)
T ss_dssp CCEEETTEEECTTCEEEE--TTEEEEECTTSC-----EEEEET---TEEEEECCCTTSCS--SEEEEECTTSCEEEEET-
T ss_pred CCEecCCCEecCCCEEEE--CCEEEEEcCCCC-----EEEEcC---CcEEEEccCccCCC--CcEEEEeccccEEEEec-
Confidence 489999999999999974 999999998875 445544 58999999987733 45677888888888775
Q ss_pred CcEEEeecCC
Q 042187 105 NGTIWSTNVS 114 (116)
Q Consensus 105 ~~~vWssn~~ 114 (116)
+.++|++++.
T Consensus 68 ~~~~w~s~t~ 77 (112)
T d1xd5a_ 68 SRAIWASNTN 77 (112)
T ss_dssp TEEEEECCCC
T ss_pred CCeEEEEeec
Confidence 3566666653
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Probab=99.32 E-value=6.8e-12 Score=83.48 Aligned_cols=74 Identities=18% Similarity=0.383 Sum_probs=58.8
Q ss_pred CccCCCCeE--EeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEE
Q 042187 32 SFIRDGEKL--VSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIW 109 (116)
Q Consensus 32 ~~L~~~~~L--vS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vW 109 (116)
|.|.++|.| .+.+|.|+|.|+.+++ |.+ |.. .+++|.+++..+. ..+.|.|+.||+|+|+|.++.+||
T Consensus 15 ~~l~~~q~l~~~~~~~~y~l~mQ~DGN-----LVL-y~~--~~~vWssnt~~~~--~~~~l~l~~dGnLvL~d~~g~~vW 84 (119)
T d1b2pa_ 15 QILHATESLEILFGTHVYRFIMQTDCN-----LVL-YDN--NNPIWATNTGGLG--NGCRAVLQPDGVLVVITNENVTVW 84 (119)
T ss_dssp CEEETTCEEEEEETTEEEEEEECTTSC-----EEE-EET--TEEEEECCCTTSC--SSCEEEECTTSCEEEECTTCCEEE
T ss_pred CEEeCCCeEEEecCCceEEEEECCCCc-----EEE-EEC--CeEEEEecCCCCC--cceEEEEEeCCCEEEECCCCcEEE
Confidence 455555554 6678999999999886 434 443 6899999998773 357899999999999999999999
Q ss_pred eecCCC
Q 042187 110 STNVSS 115 (116)
Q Consensus 110 ssn~~~ 115 (116)
++++.+
T Consensus 85 sS~t~~ 90 (119)
T d1b2pa_ 85 QSPVAG 90 (119)
T ss_dssp ECSCCC
T ss_pred ECCCcC
Confidence 998764
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Probab=99.01 E-value=1.1e-10 Score=77.02 Aligned_cols=70 Identities=20% Similarity=0.379 Sum_probs=46.7
Q ss_pred CccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEee
Q 042187 32 SFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWST 111 (116)
Q Consensus 32 ~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWss 111 (116)
|.|.+++.| .+|.|+|.|+.+++ |.++.. ..++|.++...+ ..+.+.|++||||+|+|.++++||++
T Consensus 15 ~tl~~~~~l--~~g~~~l~~q~DGN-----LvL~~~---~~~vW~s~t~~~---~~~~l~l~~dGNLvl~d~~~~~vWsS 81 (115)
T d1dlpa1 15 QTLHAAQSL--ELSSFRFTMQSDCN-----LVLFDS---DVRVWASNTAGA---TGCRAVLQSDGLLVILTAQNTIRWSS 81 (115)
T ss_dssp SCCCTTCEE--CSTTEEEEECTTSC-----EEEEES---SSEEECCCCCSC---SCCBCCBCSSSCBCCBCTTTCCSCCC
T ss_pred ceecCCCcE--EcCCEEEEECCCCe-----EEEEcC---CeeEEEcccCCC---CceEEEEeccCCEEEEccCCCEEEEc
Confidence 444445554 45779999988875 445443 567888876543 24567777777777777777777777
Q ss_pred cCC
Q 042187 112 NVS 114 (116)
Q Consensus 112 n~~ 114 (116)
++.
T Consensus 82 ~t~ 84 (115)
T d1dlpa1 82 GTK 84 (115)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Probab=98.75 E-value=9.7e-09 Score=67.80 Aligned_cols=72 Identities=17% Similarity=0.341 Sum_probs=51.4
Q ss_pred CccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEee
Q 042187 32 SFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWST 111 (116)
Q Consensus 32 ~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWss 111 (116)
+.|..++.| ..|.|.|.|..+++ |.++.. ..++|.++.... ...+.+.|+++|||+|+|.+++++|++
T Consensus 24 ~~l~~~q~l--~~g~y~L~~q~DGN-----LvL~~~---~~~vW~s~t~~~--~~~~~~~l~~~GnLvl~d~~~~~lW~S 91 (120)
T d1dlpa2 24 QTLHATQSL--QLSPYRLSMETDCN-----LVLFDR---DDRVWSTNTAGK--GTGCRAVLQPNGRMDVLTNQNIAVWTS 91 (120)
T ss_dssp CEECSSCCC--BCSSCEEEEETTTE-----EEEEBT---TBCCSCCCCCSS--CSSCEEEEETTTEEEEEETTTEEEEEC
T ss_pred cEEcCCCee--EcCCEEEEEcCCCc-----EEEecC---CcEEEEEccccC--CCcEEEEEeCCeeEEEEcCCCCEEEEe
Confidence 333344443 24668999988764 445543 578898876543 335689999999999999999999999
Q ss_pred cCCC
Q 042187 112 NVSS 115 (116)
Q Consensus 112 n~~~ 115 (116)
++.+
T Consensus 92 ~t~~ 95 (120)
T d1dlpa2 92 GNSR 95 (120)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9743
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Probab=98.57 E-value=1.2e-08 Score=67.30 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=42.8
Q ss_pred EEeecCC-CeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeecCCC
Q 042187 64 LWYQKIP-DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSS 115 (116)
Q Consensus 64 Iw~~~~~-~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn~~~ 115 (116)
|||.+.+ ++++|++++++++....-+|.|+.||||+|++. ++++|++++.+
T Consensus 12 il~~~~~~~~~~~~l~~~q~l~~g~y~L~~q~DGNLvL~~~-~~~vW~s~t~~ 63 (120)
T d1dlpa2 12 ILYSTQGNDNHPQTLHATQSLQLSPYRLSMETDCNLVLFDR-DDRVWSTNTAG 63 (120)
T ss_dssp ECCCC--CCCCCCEECSSCCCBCSSCEEEEETTTEEEEEBT-TBCCSCCCCCS
T ss_pred EEEcCCCCCCcccEEcCCCeeEcCCEEEEEcCCCcEEEecC-CcEEEEEcccc
Confidence 8898777 888999999999986566899999999999986 57899998764
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Probab=98.02 E-value=1.1e-06 Score=57.26 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=36.5
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeecCCC
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVSS 115 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn~~~ 115 (116)
.+..|..+.++++.+..-+|.|+.||||+|++ ++.++|++++.+
T Consensus 11 ~~~~~tl~~~~~l~~g~~~l~~q~DGNLvL~~-~~~~vW~s~t~~ 54 (115)
T d1dlpa1 11 GSHPQTLHAAQSLELSSFRFTMQSDCNLVLFD-SDVRVWASNTAG 54 (115)
T ss_dssp SCSCSCCCTTCEECSTTEEEEECTTSCEEEEE-SSSEEECCCCCS
T ss_pred CCCcceecCCCcEEcCCEEEEECCCCeEEEEc-CCeeEEEcccCC
Confidence 45558889999987666789999999999997 467999999765
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Snowdrop (Galanthus nivalis) [TaxId: 4670]
Probab=97.93 E-value=1.6e-05 Score=50.68 Aligned_cols=82 Identities=17% Similarity=0.334 Sum_probs=50.0
Q ss_pred ccccCCCCccCCCCe--EEeCCCceEEEEecCC----------CCCceEEEE------EeecCCCeEEEEecCCCCCCCC
Q 042187 25 ADTLTPASFIRDGEK--LVSSAQRFELGFFSPG----------KSKNRYVGL------WYQKIPDTVFWVANRNSPISDH 86 (116)
Q Consensus 25 ~~tl~~G~~L~~~~~--LvS~~g~F~lGF~~~~----------~~~~~~l~I------w~~~~~~tvvW~Anr~~pv~~~ 86 (116)
-++|.+|+.|..|++ .+-.+|++.+- ..+ .....++-+ ...+....++|..+...+. .
T Consensus 7 g~~L~~G~~l~ng~~~l~~q~DGNLvly--~~~~~vW~s~~~~~~~~~~l~l~~~Gnlvl~~~~g~~vWsS~t~~~~--~ 82 (108)
T d1jpca_ 7 GETLSTGEFLNYGSFVFIMQEDCNLVLY--DVDKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQN--G 82 (108)
T ss_dssp TEEECTTCEEEETTEEEEECTTSCEEEE--ETTEEEEECCCTTSCSSCEEEECTTSCEEEECTTCCEEEECCCCCSC--S
T ss_pred CCEecCCCEEEcCCEEEEECCCCeEEEE--eCCceeeEeCCCCCCCccEEEEeccceEEEECCCccceEEccccCCC--C
Confidence 467899999987664 34577877652 221 000111110 0011116789998766542 2
Q ss_pred cceEEEecCCcEEEEcCCCcEEEeecC
Q 042187 87 NAVLTISNNGNLVLLNQTNGTIWSTNV 113 (116)
Q Consensus 87 ~~~L~l~~dG~LvL~d~~~~~vWssn~ 113 (116)
...+.|++||||||+++ ++|+|++
T Consensus 83 ~~~l~L~ddGNlVly~~---~~W~S~t 106 (108)
T d1jpca_ 83 NYVCILQKDRNVVIYGT---DRWATGT 106 (108)
T ss_dssp CEEEEECTTSCEEEEEC---CCCCCCC
T ss_pred cEEEEEcCCCCEEEeCC---CcccCCC
Confidence 34689999999999964 5899986
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Gastrodianin (antifungal protein)
species: Gastrodia elata [TaxId: 91201]
Probab=97.91 E-value=1.3e-05 Score=51.30 Aligned_cols=86 Identities=20% Similarity=0.387 Sum_probs=51.7
Q ss_pred cccccCCCCccCCCCeE--EeCCCceEEEEecC-----C--C-CCceEEE-------EEeecCCCeEEEEecCCCCCCCC
Q 042187 24 AADTLTPASFIRDGEKL--VSSAQRFELGFFSP-----G--K-SKNRYVG-------LWYQKIPDTVFWVANRNSPISDH 86 (116)
Q Consensus 24 a~~tl~~G~~L~~~~~L--vS~~g~F~lGF~~~-----~--~-~~~~~l~-------Iw~~~~~~tvvW~Anr~~pv~~~ 86 (116)
+-++|.+|+.|..|.+- +-.+|++.+-.... . + ...-++- +-|.. ..++|..+.... ..
T Consensus 6 ~gq~L~~g~~l~~g~~~l~~q~DGNLvly~~~~~vW~s~~~~~~~~~~l~l~~dGnLvl~~~--~~~~w~s~t~~~--~~ 81 (112)
T d1xd5a_ 6 SGHQLDTGGSLAEGGYLFIIQNDCNLVLYDNNRAVWASGTNGKASGCVLKMQNDGNLVIYSG--SRAIWASNTNRQ--NG 81 (112)
T ss_dssp TTEEECTTCEEEETTEEEEECTTSCEEEEETTEEEEECCCTTSCSSEEEEECTTSCEEEEET--TEEEEECCCCCS--CC
T ss_pred CCCEecCCCEEEECCEEEEEcCCCCEEEEcCCcEEEEccCccCCCCcEEEEeccccEEEEec--CCeEEEEeeccC--CC
Confidence 34678889988866642 34666665532110 0 0 0011110 11221 456777654433 23
Q ss_pred cceEEEecCCcEEEEcCCCcEEEeecC
Q 042187 87 NAVLTISNNGNLVLLNQTNGTIWSTNV 113 (116)
Q Consensus 87 ~~~L~l~~dG~LvL~d~~~~~vWssn~ 113 (116)
...+.|++||||||+|.+++++|+|++
T Consensus 82 ~~~l~L~ddGNlvly~~~~~~~W~S~t 108 (112)
T d1xd5a_ 82 NYYLILQRDRNVVIYDNSNNAIWATHT 108 (112)
T ss_dssp CCEEEECTTSCEEEECTTSCEEEECCC
T ss_pred ceEEEEcCCCCEEEECCCCcEEecCCC
Confidence 457999999999999999999999986
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]
Probab=97.60 E-value=0.00021 Score=45.45 Aligned_cols=39 Identities=28% Similarity=0.555 Sum_probs=30.1
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeecCC
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVS 114 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn~~ 114 (116)
.+++|..+...+. ....+.|++||||||+| .++|+|++.
T Consensus 70 g~~vW~s~t~~~~--~~~~l~L~ddGNlvly~---~~~W~S~t~ 108 (109)
T d1kj1a_ 70 GRSLWASHSVRGN--GNYVLVLQEDGNVVIYG---SDIWSTGTY 108 (109)
T ss_dssp SCEEEECCCCCCS--SCCEEEECTTSCEEEEC---CEEEECCCC
T ss_pred CcEEEEEeeECCC--CCEEEEEeCCCcEEEEC---CCEecCCCc
Confidence 6789998765442 23479999999999995 479999873
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]}
Back Show information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Bluebell (Scilla campanulata) [TaxId: 81759]
Probab=97.32 E-value=0.00058 Score=44.06 Aligned_cols=39 Identities=18% Similarity=0.457 Sum_probs=29.9
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeecCC
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNVS 114 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn~~ 114 (116)
..++|..+...+. ....|.|++||||+|++ .++|+|++.
T Consensus 80 g~~vWsS~t~~~~--~~~~l~Lq~DGNlvlYg---~~~W~S~T~ 118 (119)
T d1b2pa_ 80 NVTVWQSPVAGKA--GHYVLVLQPDRNVVIYG---DALWATQTV 118 (119)
T ss_dssp CCEEEECSCCCCS--SCEEEEECTTSCEEEEE---SEEEECCCC
T ss_pred CcEEEECCCcCCC--CceEEEEcCCCCEEEEC---CCEeccCCc
Confidence 5789987765442 23469999999999984 589999874