Citrus Sinensis ID: 042220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSKFEVVCIYTSSS
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccccccHHHHHHHcccHHHHHHHHHHccHHcccccccccccHHHHHcccccHHHHHHHHcccHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEccc
Coil and Loop (DISEMBL)
ydksaacisdnDQKMTALLLAAGRGHIRVVNEIIStcpdcckqVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINkqdvngntPLHVLAAVLQKEKTAVEegeikelkprHTIVATLIATVTFAagftlpggywgkegpipgtsILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSKFEVVCIYTSSS
Flexible Loop (DISEMBL)
ydksaacisdndqKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEegeikelkprhTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSKFEVVCIYTSSS
Low Complexity Region (SEG)
YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSKFEVVCIYTSSS
Disordered region (IsUnstruct)
**************MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSKFEVVCIYT***
Disordered Region (DISOPRED)
YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSKFEVVCIYTSS*
Disordered Region (DISEMBL)
YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSKFEVVCIYTSSS
Disordered Region (DISPRO)
YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSKFEVVCIYTS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSKFEVVCIYTSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.360	0.155	0.320	0.0008

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 11/103 (10%)

Query: 115 TIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVF 174
           T+VA L ATV FAA FT+PGG         G+++++  A+F+ F + + +A+  SL+ V 
Sbjct: 423 TVVAVLFATVAFAAIFTVPGGDNND-----GSAVVVGRASFKIFFIFNALALFTSLAVVV 477

Query: 175 IHFL---TSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTY 214
           +        TK  +++  + N   +  +ASM    VAF+  +Y
Sbjct: 478 VQITLVRGETKAEKRVVEVINKLMW--LASMCTS-VAFLASSY 517

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
255551947	582	ankyrin repeat-containing protein, putat	0.956	0.419	0.457	2e-53
255585399	575	ankyrin repeat-containing protein, putat	0.952	0.422	0.396	2e-48
298205141	645	unnamed protein product [Vitis vinifera]	0.882	0.348	0.390	9e-38
296085349	569	unnamed protein product [Vitis vinifera]	0.839	0.376	0.401	1e-34
356510752	629	PREDICTED: ankyrin-2-like [Glycine max]	0.937	0.379	0.331	5e-33
224127106	575	predicted protein [Populus trichocarpa]	0.921	0.408	0.336	7e-31
224126975	381	predicted protein [Populus trichocarpa]	0.917	0.614	0.339	8e-31
147842376	546	hypothetical protein VITISV_043077 [Viti	0.898	0.419	0.355	8e-31
296087902	472	unnamed protein product [Vitis vinifera]	0.949	0.512	0.326	5e-30
224127083	206	predicted protein [Populus trichocarpa]	0.623	0.771	0.458	1e-29

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/256 (45%), Positives = 162/256 (63%), Gaps = 12/256 (4%)

Query: 2   DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL 61
           DKSAA + D D+K TAL LAA RG++R++ EIIS CPDCC+  D+RGWN+LH+A+ S N 
Sbjct: 296 DKSAAYVVDKDRKRTALHLAACRGNVRIMKEIISKCPDCCEIADDRGWNVLHYAVVSKND 355

Query: 62  FQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEI-------KELKPRH 114
             L   LRN S+  L+N +D  GNTPLH+LA       + V +GE        + +  R 
Sbjct: 356 EALQVILRNSSLIDLVNDRDAQGNTPLHLLAVSRPYLPSFVFDGEDDLNAFYKQNVLSRD 415

Query: 115 TIVATLIA---TVTFAAGFTLPGGYWGKEG-PIPGTSILIKNAAFQAFVVSDVIAMVLSL 170
            ++  L+           FTLPGGY   E  P  GT+IL K++AF+AF+++D IAMVLS 
Sbjct: 416 DLIHELLQPKYQQKRQXXFTLPGGYRSDENDPRQGTAILSKSSAFEAFIITDTIAMVLST 475

Query: 171 SAVFIHFLTSTKTLRQ-IWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCV 229
            +VFIHF+      ++  W+L   A   +M +M AMVVAF TGTYA+L+PS+GL+VATC 
Sbjct: 476 CSVFIHFIVMLLGYQEKYWWLIRSALLFIMFAMGAMVVAFATGTYAVLSPSLGLAVATCF 535

Query: 230 LGLSFILVAFFAMSKF 245
           +GLSF +  F+ + + 
Sbjct: 536 IGLSFFIYVFYMLKRL 551

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 167/300 (55%), Gaps = 57/300 (19%)

Query: 1   YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSN 60
           YDK  A  +D  ++ TAL LAA + +I+ + EII  CPDCCK VD RGWN+ H+A+ S +
Sbjct: 266 YDKYVAYAADKARRRTALHLAACQANIKSMREIIFKCPDCCKLVDNRGWNVAHYAVISKS 325

Query: 61  LFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGE-------------I 107
              L   L N S   L+N++D  GNTPLH+LAA+    ++ +   +             I
Sbjct: 326 DDALKILLANPSCIYLVNEKDAQGNTPLHLLAALQSHPRSLMHHAKGHRFAVYRQNFLCI 385

Query: 108 KELKPR----------------------------------------HTIVATLIATVTFA 127
           KEL  R                                        H +VA L+ATVTFA
Sbjct: 386 KELLSRSPCRKKEIQEWMRDLGGGPLGQIVIKKDDFILTFERARDSHIVVAALVATVTFA 445

Query: 128 AGFTLPGGYWGKEGPIP-GTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQ 186
           A FTLPGGY   +     G +IL KN+AF+AF+++D IAMVLS S++FIHF  +    RQ
Sbjct: 446 AAFTLPGGYRSNDDEKDQGVAILGKNSAFKAFLITDAIAMVLSTSSLFIHFTLALHGYRQ 505

Query: 187 --IWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVAFFAMSK 244
             +W +   A   ++ ++ AMVVAFVTGTYA+L+PS GL+++TC +GLSF +  FF +++
Sbjct: 506 RFMWLMV-YAFRCIVFAIEAMVVAFVTGTYAVLSPSQGLAISTCAIGLSFFIFVFFILTR 564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205141|emb|CBI17200.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (411), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/284 (39%), Positives = 148/284 (52%), Gaps = 59/284 (20%)

Query: 2   DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAM--ASS 59
           DKS A ++  D   TAL +A+   H ++V EI+S  P C +QVD++G N  HFAM     
Sbjct: 347 DKSVAYLTIKDGNKTALHIASFHHHTKIVEEIVSHSPGCREQVDDKGNNAFHFAMMKKGD 406

Query: 60  NLFQLHSRLRNR--SVEMLINKQDVNGNTPLHVLA------------------------- 92
           + + +HS  RN+      L+N++D  GNTPLH+L+                         
Sbjct: 407 DDYYIHSYFRNKWLRTRGLVNEKDAQGNTPLHLLSCYQIQRFSEKGKIQEQFEWAMPGNT 466

Query: 93  --AVLQKEKTAVEEGEIKELKPRHT-----------IVATLIATVTFAAGFTLPGGYWGK 139
             A+ +  K   +E E KE K ++T           IV+ LI TVTFAAGFTLPGGY  K
Sbjct: 467 SMAMEKSMKKLKKETESKEYKEKYTSELRKQGETHLIVSALITTVTFAAGFTLPGGY--K 524

Query: 140 EGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQ------IW-FLFN 192
           E    G +IL K AAF AFVV+D IAMV SL AVF+HF  + +   +      +W F+F 
Sbjct: 525 ED--DGKAILSKKAAFGAFVVTDTIAMVSSLCAVFLHFFMTMRKDDEFLEKHLLWAFIFT 582

Query: 193 VAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFIL 236
                 M  M AM +AF TG Y +L  S GLS  +C+L   F L
Sbjct: 583 ------MVGMGAMAIAFATGLYVVLPHSSGLSFLSCILCSCFFL 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085349|emb|CBI29081.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 140/264 (53%), Gaps = 50/264 (18%)

Query: 2   DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL 61
           DKS   +   D  +TAL +AA  G +++V  + S  PDCC+QVD++G N+ HFAM     
Sbjct: 264 DKSVPYLRIKDGNLTALHIAARHGRMKIVEILASHSPDCCEQVDDKGNNVFHFAMMKRKA 323

Query: 62  FQLHSRLRNR--SVEMLINKQDVNGNTPLHVLAA----------------------VLQK 97
           +     LRNR   V  LIN++D  G+TPLH+LA+                      +  K
Sbjct: 324 YASGDLLRNRWLRVTGLINEKDGEGDTPLHLLASHQVFDPPFYLIHQYFGEISVTHIGPK 383

Query: 98  EKTAVEEGE-------------------IKELKPRHTIVATLIATVTFAAGFTLPGGYWG 138
               V +G+                   IK     H IVA LIATVTFAAGFTLPGGY  
Sbjct: 384 RWQEVTKGDDDSGRSQGNEGNNQDTSNLIKRKGETHLIVAALIATVTFAAGFTLPGGY-- 441

Query: 139 KEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSL 198
                 G +IL K AAF+AFVV D IAMVLS+SAVF +   S  + R+++   ++    L
Sbjct: 442 --NQSNGMAILSKKAAFKAFVVMDTIAMVLSVSAVFYYLFMSLHS-RKVFLDKHIIRGFL 498

Query: 199 --MASMLAMVVAFVTGTYAMLAPS 220
             M +M+AMVVAF+TG YA+L  S
Sbjct: 499 LTMFAMVAMVVAFMTGLYAVLPHS 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510752|ref|XP_003524098.1| PREDICTED: ankyrin-2-like [Glycine max]

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 151/308 (49%), Gaps = 69/308 (22%)

Query: 2   DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL 61
           D++ A + DN+ + TAL +AA     R+V  II   PDC + VD +GWN LH+A+     
Sbjct: 291 DENTAYMQDNEGR-TALHIAADSDSRRIVKMIIKYYPDCSEIVDNKGWNALHYAVNGGKQ 349

Query: 62  FQLHSRLRNRSVEMLINKQDVNGNTPLHVLA-------------------AVLQKEKTAV 102
             +   +RN  +  L N++DV+GNTPLH L                    AV +K++T +
Sbjct: 350 NTIRRIMRNLYLSNLYNEKDVDGNTPLHYLPNSNLVACHKLVGHPRVDKLAVNKKDQTVL 409

Query: 103 E------------------EGEI----------------------------KELKPRHTI 116
           +                  EG+I                            KE K  H +
Sbjct: 410 DVAYVKTEDPDPESDKRTREGQIVLLEMAGAKRSLRLDQKSKNGLNGLVFPKEAKQTHLL 469

Query: 117 VATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIH 176
           VATLI TV+FAAG TLPGG   ++G + GT +L    +F+AF+ S+ IAMVL+ +A FI+
Sbjct: 470 VATLITTVSFAAGITLPGGTI-QDGELKGTPLLGHKTSFKAFMASNTIAMVLASTAAFIN 528

Query: 177 FLTS-TKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFI 235
             T  TKT  + ++    A    + +++ M+VAF TGTY +L  S    +A   +GLSF 
Sbjct: 529 LFTPLTKTKWKDYYFSKAALIFTLTALVTMIVAFATGTYVVLGSS-SFGIAIITIGLSFF 587

Query: 236 LVAFFAMS 243
           + A+  M 
Sbjct: 588 IFAYCVME 595

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 154/318 (48%), Gaps = 83/318 (26%)

Query: 1   YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCP---------------------- 38
           YD S A I++ ++K TAL +AA +GH+  + EI+S CP                      
Sbjct: 252 YDASTASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDLVDNRGWNALHYAVASKD 311

Query: 39  -----DCCK---------QVDERGWNLLHFAMASSN--------LFQLHSRLRNRSVEML 76
                +C K         + D++G    H   A ++        LF   +  R   +  L
Sbjct: 312 TKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPEWRYVLFNDSNGYRKWQIYGL 371

Query: 77  INKQDVNGNTPLHVLAAVLQKE---------------------KTAVEEGE--IKELKPR 113
            NK+ ++ N         +QKE                     +   +EGE  + + +  
Sbjct: 372 -NKRKLSVNDIYEEDFGEIQKEILESLNDGGSGPLGRRRKVLRRGRNKEGEDALSKARES 430

Query: 114 HTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAV 173
           H +VA LIATVTFAA FTLPGGY    G    T+IL K AAF  FVVSD ++MVLS+SAV
Sbjct: 431 HLVVAALIATVTFAAAFTLPGGYKSDRG----TAILAKKAAFIVFVVSDAMSMVLSISAV 486

Query: 174 FIHFLTS---------TKTLRQ--IWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVG 222
           FIHFL S         +K + +     LF VA    M  M  M++AF+TGTYA+L PS+G
Sbjct: 487 FIHFLISLIHAFEMEKSKDISEEAAIKLFGVATLFTMIGMGIMIIAFITGTYAVLEPSLG 546

Query: 223 LSVATCVLGLSFILVAFF 240
           L++++C++GLSF  + + 
Sbjct: 547 LAISSCLIGLSFFFIVYL 564

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126975|ref|XP_002329352.1| predicted protein [Populus trichocarpa] gi|222870402|gb|EEF07533.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 157/312 (50%), Gaps = 78/312 (25%)

Query: 1   YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLL-------- 52
           +D SAA I D+ +K TAL LA  RG +  V  I++ CP CC+ VD RGWN+L        
Sbjct: 52  HDVSAAYIVDS-EKRTALHLAVVRGDVAAVRAIMNPCPACCELVDNRGWNVLHYAATTIK 110

Query: 53  ----------HFA--------------------------MASSNLFQLHSRL-----RNR 71
                     HF                             SS+    + ++     RN 
Sbjct: 111 GYFYFPQWIPHFEKLKYEKDNDGNTPLHLYAALGNFPQQRLSSDWIHAYKKMCGLNKRNL 170

Query: 72  SVEMLINK-------------QDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVA 118
           SV+ ++ +             +DV    PL    A+++KE  ++ E  ++       +VA
Sbjct: 171 SVDDILGRNFPETKKEILESLKDVRSG-PLQRPIAMMKKEYLSISERGMET----RVLVA 225

Query: 119 TLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFL 178
            L+ATVTFAA FT+PGGY  ++G     ++L+KNAAF  FV+SD IAM+LS+SA+F+HF 
Sbjct: 226 ALVATVTFAAAFTMPGGYKNEQG----IAVLLKNAAFVVFVISDAIAMLLSISALFMHFC 281

Query: 179 ---TSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFI 235
                T+   +     N      + ++ AMV+AF+TG+YA+LAPS  L++ TC +G +FI
Sbjct: 282 WAPIGTRGQVEEDMKGNWTSTLTICAIPAMVIAFITGSYAVLAPSSWLAITTCFIGAAFI 341

Query: 236 LVAFFAMSKFEV 247
              FFA + F V
Sbjct: 342 ---FFASTAFIV 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147842376|emb|CAN69518.1| hypothetical protein VITISV_043077 [Vitis vinifera]

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 150/326 (46%), Gaps = 97/326 (29%)

Query: 2   DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAM----- 56
           +KS A +   D K TAL +A+      +V +I+S  P C +QVD++G N+ HFAM     
Sbjct: 215 EKSVAYLRSKDGKKTALHIASFHHRTEIVEKILSHSPGCREQVDDKGNNIFHFAMMKEGD 274

Query: 57  ----ASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA-------------------- 92
                SS  F    RLR      LINK++  GNTP+H+L+                    
Sbjct: 275 DDFNPSSYFFNYWLRLRG-----LINKKNAQGNTPIHLLSLKQILDFEFVRMHMVDKKAY 329

Query: 93  ----------AVLQKEKTAVEEGEI-----------------KELKPR------------ 113
                      +  KE  + ++ EI                 KE+K R            
Sbjct: 330 NNEDLTAYDIILRAKEDNSEKKDEIQRLFELAMTEDICSFWEKEIKGRERKKERKEYISQ 389

Query: 114 -------HTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAM 166
                  H IV+  I TVTFAAGFTL GGY  KE    G +IL K AAF+AFVV+D IAM
Sbjct: 390 LQKQGETHLIVSAFITTVTFAAGFTLLGGY--KEDD--GKAILSKKAAFRAFVVTDTIAM 445

Query: 167 VLSLSAVFIHFLTS----TKTLRQ--IW-FLFNVAHYSLMASMLAMVVAFVTGTYAMLAP 219
           V SL AVF+HF  +     K L +  +W F+F         +M AM +AF TG YA+L  
Sbjct: 446 VSSLCAVFLHFFMTLHKRGKFLEKHLLWAFIFT------RVAMGAMAIAFATGLYAVLPH 499

Query: 220 SVGLSVATCVLGLSFILVAFFAMSKF 245
           S GLSV TC+L   F L       KF
Sbjct: 500 SSGLSVLTCILCSCFFLSIAVEYCKF 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087902|emb|CBI35185.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 145/309 (46%), Gaps = 67/309 (21%)

Query: 1   YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSN 60
           YDKS A + D +    AL +AA  GH  V+ +II+  PD    +D +G  +LH A    N
Sbjct: 146 YDKSVAGLLDVEHS-CALHIAAKEGHTNVMEQIITCLPDVYDLIDNKGRTILHVAAQYGN 204

Query: 61  LFQLHSRLRNRSVEMLINKQDVNGNTPLH------------VLAA--------------- 93
              +   L+  ++E +IN+ D  GNTPLH            +LAA               
Sbjct: 205 ARVVKYILKKPNLESIINEPDKEGNTPLHLAAIYGHYGVVIMLAADDRVDKRAMNNEYLK 264

Query: 94  ----------------------------VLQKEKTAVEEGEI-----KELKPRHTIVATL 120
                                       +L + +  ++E E+     K++   H +VATL
Sbjct: 265 TIDIVQSNMDIGEKIKVRYCKYWIMRNILLDRNREIMKEKELRSHHLKDISNTHLLVATL 324

Query: 121 IATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTS 180
           IATVTFAAGFTLPGGY   + P  G ++L    AF+ F++SD IA   S + VF+HF  S
Sbjct: 325 IATVTFAAGFTLPGGY-NDDDPDKGKAVLSTKIAFKTFLLSDGIAFYCSTAVVFLHFFAS 383

Query: 181 TKTLRQIWFLFNVAHYSLM---ASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILV 237
            +  R    L     +S +    S+L MV+AF +G Y +L  S GLS +  VLG  F+  
Sbjct: 384 LE--RNYHLLLGFIKFSAILTYVSILGMVIAFTSGIYLVLPSSSGLSTSAFVLGCLFLSF 441

Query: 238 AFFAMSKFE 246
             F +S+ E
Sbjct: 442 YIFGLSQSE 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127083|ref|XP_002329388.1| predicted protein [Populus trichocarpa] gi|222870438|gb|EEF07569.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/179 (45%), Positives = 113/179 (63%), Gaps = 20/179 (11%)

Query: 74  EMLINKQDVNGNTPL---HVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGF 130
           E+L + +DV GN PL    VL    + EK A+ +      +  H +VA LIATVTFAA F
Sbjct: 21  EILKSLEDV-GNGPLGSRKVLKGQNEGEKEAMSKA-----RESHLVVAALIATVTFAAAF 74

Query: 131 TLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTS---------T 181
           TLPGGY   +GP  GT+IL+K AAF  FV+SD ++MVLS+ AVFIHFLT+          
Sbjct: 75  TLPGGYKNDQGPNEGTAILVKKAAFIVFVISDAMSMVLSILAVFIHFLTAFIQGFKMEKN 134

Query: 182 KTLRQ--IWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILVA 238
           K + +  I  LF VA    M  M  M++AF+TGT A+L PS+GL++ TC++G++F ++ 
Sbjct: 135 KEIDEETIEKLFEVATLLTMIGMGTMIIAFITGTCAVLEPSLGLAICTCLIGMNFFILG 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.494	0.181	0.322	6.5e-17
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.498	0.189	0.351	1.2e-16
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.490	0.188	0.305	2.8e-14
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.866	0.326	0.303	5.3e-14
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.4	0.178	0.346	1.9e-13
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.517	0.230	0.321	7.3e-12
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.450	0.189	0.293	3.9e-11
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.490	0.230	0.299	3.9e-11
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.631	0.335	0.259	1.4e-10
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.466	0.227	0.328	1.9e-10

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
 Identities = 41/127 (32%), Positives = 64/127 (50%)

Query:   116 IVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFI 175
             +VA L+AT+TFAAGFT+PGG+     P  G + L  N     F+V D++AM  S++ + I
Sbjct:   524 LVAALVATMTFAAGFTIPGGF-NSSAPHLGRATLATNPTLFIFLVLDILAMQSSVATIGI 582

Query:   176 HFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFI 235
                        I    +VA   L+ ++L M +AF+ G    +     L V  C++ + F 
Sbjct:   583 LIWAQLGDPVLIRSSLHVALPLLLFALLCMPLAFLFGVVTAVGHVKWLVVIICIISVLFF 642

Query:   236 LVAFFAM 242
               A F +
Sbjct:   643 SWAIFVL 649

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
 Identities = 45/128 (35%), Positives = 65/128 (50%)

Query:   116 IVATLIATVTFAAGFTLPGGYWG-KEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVF 174
             +VA L+ATVTFAAGFT+PGGY    + P  G + L  N     F++ D++AM  S++ + 
Sbjct:   496 VVAALVATVTFAAGFTIPGGYISDSKKPNLGRATLATNPTLFIFLLFDILAMQSSVATIC 555

Query:   175 IHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSF 234
                      L  I    +VA   L+ S+L M VAF+ G    +A    L V   ++   F
Sbjct:   556 TLIWAQLGDLALILKSLHVALPLLLFSLLCMPVAFLFGVITAIAHVKWLLVTISIISGGF 615

Query:   235 ILVAFFAM 242
              L A F +
Sbjct:   616 FLFAIFIL 623

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
 Identities = 41/134 (30%), Positives = 71/134 (52%)

Query:   115 TIVATLIATVTFAAGFTLPGGYWG--KEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSA 172
             T+VA LIATV FAA FT+PG Y     +G + G + +   A F  F + D +A+ +SL+ 
Sbjct:   482 TVVAVLIATVAFAAIFTIPGQYEEDRSKGELLGQAHIANKAPFLVFFIFDSLALFISLAV 541

Query:   173 VFIH---FLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPS-VGLSVATC 228
             V +     +   K  +++ F+ N     +  + L + +AFV+ +Y ++    + L+V   
Sbjct:   542 VVVQTSVVVIEQKAKKKLVFVINKL---MWCACLFISIAFVSLSYIVVGKEEMWLAVCAT 598

Query:   229 VLGLSFILVAFFAM 242
             V+G + +L    AM
Sbjct:   599 VIGGTIMLTTIGAM 612

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 70/231 (30%), Positives = 109/231 (47%)

Query:     8 ISDNDQK-MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHS 66
             I++ D    T L LA    H +VV+ +        K ++  G   L   +A  N+   ++
Sbjct:   416 INEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALD--IAEKNMDSSYT 473

Query:    67 RLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTF 126
                  +   LI+     G  P  +L+  + +     + G+ K+      +VATL+AT+TF
Sbjct:   474 FFERLTWMALISAGAPRG--PKLILSTPVTQNS---DGGKYKDRVNTLLLVATLVATMTF 528

Query:   127 AAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQ 186
              AGFTLPGGY G   P  G + L K  AFQ F+V D +AM  S+  +          L  
Sbjct:   529 TAGFTLPGGYNGSV-PNFGMATLAKKTAFQVFLVFDTLAMYCSIITIVALIWAQLGDLSL 587

Query:   187 IWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVGLSVATCVLGLSFILV 237
             I   FN+A   L  ++ +M +AF+ GTYA +   + + V T    L F+L+
Sbjct:   588 IMKAFNLALPLLGLALTSMSIAFMAGTYAAVYGLLIVGVLTSSY-LDFLLL 637

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 36/104 (34%), Positives = 55/104 (52%)

Query:    21 AAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQ 80
             AA  GHIR+V EI+  CP     +++ G N+LH A        + S +R+   + L   Q
Sbjct:   348 AAENGHIRIVKEILKRCPHSKHMLNKLGQNVLHIAAKIGEHNLVKSLMRSDDTKHLGVGQ 407

Query:    81 DVNGNTPLH--VLAAVLQKEKTAVEEGEIKELKPRHTIVATLIA 122
             DV+GNTPLH  VL    +  +T   + +I +L+  + + A  IA
Sbjct:   408 DVDGNTPLHLAVLNWRYRSIRTLASDVKILQLRNDNGLTARGIA 451

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
 Identities = 44/137 (32%), Positives = 71/137 (51%)

Query:   115 TIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVF 174
             TIVA LIA+V F  G   PGG + +EGP  G S   +  AFQ F +S+ IA+  SL  V 
Sbjct:   400 TIVAVLIASVAFTCGINPPGGVY-QEGPYKGKSTAGRTLAFQVFSISNNIALFTSLCIVI 458

Query:   175 IHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSV-GLS-VATCVLGL 232
             +         R +     + H  L  ++ +M +A+V+   +++ P V G   + T VL +
Sbjct:   459 LLVSIIPYRTRPLKNFLKLTHRILWVAVASMALAYVSAA-SIIIPHVEGKRWLFTTVLSI 517

Query:   233 SFILVA-FFAMSKFEVV 248
             S +++   FA   ++V+
Sbjct:   518 STLMLGGLFAFMTYKVI 534

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
 Identities = 37/126 (29%), Positives = 63/126 (50%)

Query:    95 LQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNAA 154
             + KE   +    I       T+VA L ATV FAA FT+PGG         G ++++   +
Sbjct:   417 IAKELRKLHRAGINNATNSVTVVAVLFATVAFAAIFTVPGG-----DDDHGVAVMVHATS 471

Query:   155 FQAFVVSDVIAMVLSLSAVFIHFLT---STKTLRQIWFLFNVAHYSLMASMLAMVVAFVT 211
             F+ F + + IA+  SL+ V +        TKT R++  + N   +  +AS+    VAF++
Sbjct:   472 FKIFFIFNAIALFTSLAVVVVQITLVRGETKTERRVVEVINKLMW--LASVCT-TVAFIS 528

Query:   212 GTYAML 217
              +Y ++
Sbjct:   529 SSYIVV 534

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
 Identities = 41/137 (29%), Positives = 69/137 (50%)

Query:   115 TIVATLIATVTFAAGFTLPGGYWGKEGPIP-GTSILIKNAA----FQAFVVSDVIAMVLS 169
             T+VA LIATV FAA FT+PG Y      IP G S+   N A    F  F + D IA+ +S
Sbjct:   360 TVVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFIS 419

Query:   170 LSAVFIH---FLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVG-LSV 225
             L+ V +     +  +K  +Q+  + N   +  +A +L + VAF+  ++ ++      L++
Sbjct:   420 LAVVVVQTSVVVIESKAKKQMMAVINKLMW--LACVL-ISVAFLALSFVVVGEEEKWLAI 476

Query:   226 ATCVLGLSFILVAFFAM 242
                 +G + ++     M
Sbjct:   477 WVTAIGATIMITTLGTM 493

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 42/162 (25%), Positives = 75/162 (46%)

Query:    76 LINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGG 135
             L++K D N  +          KE++ +    ++  +   T+VA LIA+VTFA G   PGG
Sbjct:   179 LLDKDDANFPSIALKFGGESHKEESVMHSEALQNARNTITVVAILIASVTFAVGMNPPGG 238

Query:   136 YWGKEGPIPGTSILIKNAAFQAFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAH 195
              + +     G S+  K  AF+ F VS+ IA+  SL  V +         + +  +  + H
Sbjct:   239 IYQESTSSKGKSVAAKTVAFKIFYVSNSIALFTSLWIVILLVSIIPFKPKSLKNVLVITH 298

Query:   196 YSLMASMLAMVVAFVTGTYAMLAPSVGLS-VATCVLGLSFIL 236
               +  S+ A+  ++V   + +L    G   +    LG+S ++
Sbjct:   299 KMMSVSVAALATSYVAVGWIILPHFEGTKWLLYTTLGISIVM 340

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 44/134 (32%), Positives = 71/134 (52%)

Query:   115 TIVATLIATVTFAAGFTLPGGYWG--KEGPIPGTSILIKNAA----FQAFVVSDVIAMVL 168
             T+VA LIATV FAA F +PG Y    K+ P PG S+    AA    F  FVV D  A+ +
Sbjct:   354 TLVAILIATVAFAAIFNVPGQYTDDPKDVP-PGYSLGEARAAPRPEFLIFVVFDSFALFI 412

Query:   169 SLSAVFIH---FLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAPSVG-LS 224
             SL+ V +     +   +  +Q+  + N   +  MA ++ + VAFV+ ++ ++      L+
Sbjct:   413 SLAVVVVQTSVVVIERRAKKQMMAIINKLMW--MACIM-ISVAFVSLSFVVVGEKEKPLA 469

Query:   225 VATCVLGLSFILVA 238
             V    +G + I+V+
Sbjct:   470 VGVTAIG-ALIMVS 482

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  103 bits (260), Expect = 3e-28
 Identities = 46/105 (43%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 114 HTIVATLIATVTFAAGFTLPGGYWGK-EGPIPGTSILIKN-AAFQAFVVSDVIAMVLSLS 171
             +VATLIATVTFAAGFT PGGYW    G   GT IL      F+AF VS+ IA V SL 
Sbjct: 11  LLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNTIAFVASLV 70

Query: 172 AVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAM 216
           AV +  L    +  +           L  S+L+++VAF  G+Y +
Sbjct: 71  AVIL-LLYIVPSFSRRLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           ++   T L LAA  GH+ +V  ++    D   + D+ G   LH A  + NL  +   L++
Sbjct: 37  DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKH 95

Query: 71  RSVEMLINKQDVNGNTPLHV 90
            +    +N +D +G TPLH+
Sbjct: 96  GA---DVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 16/88 (18%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
          ++   T L LAA  GH+ VV  ++    D   + D  G   LH A  + +L         
Sbjct: 4  DEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHL--------- 53

Query: 71 RSVEMLI------NKQDVNGNTPLHVLA 92
            V++L+      N +D +GNTPLH+ A
Sbjct: 54 EIVKLLLEKGADVNARDKDGNTPLHLAA 81

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL 61
          +     TAL LAA  G++ +V  ++    D   + D+ G   LH A  + NL
Sbjct: 24 NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK-DKDGNTALHLAARNGNL 74

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 43 QVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA 92
            DE G   LH A ++ +L  +   L N +    +N +D +G TPLH+ A
Sbjct: 2  ARDEDGRTPLHLAASNGHLEVVKLLLENGAD---VNAKDNDGRTPLHLAA 48

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PF13962	113	PGG: Domain of unknown function	99.94
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.79
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.67
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.65
PHA02743	166	Viral ankyrin protein; Provisional	99.61
PHA02741	169	hypothetical protein; Provisional	99.59
KOG0510	929	consensus Ankyrin repeat protein [General function	99.57
PHA02736	154	Viral ankyrin protein; Provisional	99.57
PHA02791	284	ankyrin-like protein; Provisional	99.56
PHA02878	477	ankyrin repeat protein; Provisional	99.56
PHA02874	434	ankyrin repeat protein; Provisional	99.56
PHA02741	169	hypothetical protein; Provisional	99.55
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.55
PHA02859	209	ankyrin repeat protein; Provisional	99.53
PHA02875	413	ankyrin repeat protein; Provisional	99.53
PHA02791	284	ankyrin-like protein; Provisional	99.53
KOG0510	929	consensus Ankyrin repeat protein [General function	99.53
PHA02875	413	ankyrin repeat protein; Provisional	99.51
PHA02946	446	ankyin-like protein; Provisional	99.51
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.5
PHA02884	300	ankyrin repeat protein; Provisional	99.5
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.49
PHA02743	166	Viral ankyrin protein; Provisional	99.49
PHA02874	434	ankyrin repeat protein; Provisional	99.49
PHA03100	480	ankyrin repeat protein; Provisional	99.47
KOG0514	452	consensus Ankyrin repeat protein [General function	99.46
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.45
PHA03095	471	ankyrin-like protein; Provisional	99.45
PHA02859	209	ankyrin repeat protein; Provisional	99.44
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.44
PHA03095	471	ankyrin-like protein; Provisional	99.44
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.44
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.43
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.43
PHA02736	154	Viral ankyrin protein; Provisional	99.43
KOG0508	615	consensus Ankyrin repeat protein [General function	99.42
PHA02878	477	ankyrin repeat protein; Provisional	99.42
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.42
PHA03100	480	ankyrin repeat protein; Provisional	99.41
PHA02946	446	ankyin-like protein; Provisional	99.4
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.39
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.38
PHA02884	300	ankyrin repeat protein; Provisional	99.38
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.38
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.38
PHA02795	437	ankyrin-like protein; Provisional	99.37
PHA02876	682	ankyrin repeat protein; Provisional	99.37
PHA02876	682	ankyrin repeat protein; Provisional	99.36
PHA02798	489	ankyrin-like protein; Provisional	99.35
KOG0514	452	consensus Ankyrin repeat protein [General function	99.35
PHA02989	494	ankyrin repeat protein; Provisional	99.3
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.29
PHA02989	494	ankyrin repeat protein; Provisional	99.28
PHA02798	489	ankyrin-like protein; Provisional	99.28
PHA02730	672	ankyrin-like protein; Provisional	99.26
PHA02917	661	ankyrin-like protein; Provisional	99.24
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.24
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.21
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.21
KOG0508	615	consensus Ankyrin repeat protein [General function	99.21
PHA02917	661	ankyrin-like protein; Provisional	99.21
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.2
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.18
PHA02795	437	ankyrin-like protein; Provisional	99.14
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.14
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.14
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.12
PHA02792	631	ankyrin-like protein; Provisional	99.07
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.07
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.06
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.06
PHA02730	672	ankyrin-like protein; Provisional	99.04
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.04
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.03
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.02
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.02
PHA02792	631	ankyrin-like protein; Provisional	99.02
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.01
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.98
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.95
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.87
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.85
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.83
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.7
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.69
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.58
PF13606	30	Ank_3: Ankyrin repeat	98.58
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.46
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.45
PF13606	30	Ank_3: Ankyrin repeat	98.38
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.35
KOG0522	560	consensus Ankyrin repeat protein [General function	98.29
KOG0522	560	consensus Ankyrin repeat protein [General function	98.16
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.15
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.05
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	97.92
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.86
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	97.83
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.79
KOG2384	223	consensus Major histocompatibility complex protein	97.75
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.59
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.48
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.44
KOG0511	516	consensus Ankyrin repeat protein [General function	97.37
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.76
KOG2384	223	consensus Major histocompatibility complex protein	96.53
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	96.5
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.49
KOG2505	591	consensus Ankyrin repeat protein [General function	95.63
KOG2505	591	consensus Ankyrin repeat protein [General function	95.54
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.5
KOG0521	785	consensus Putative GTPase activating proteins (GAP	95.12
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	93.77
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	92.76
KOG0511	516	consensus Ankyrin repeat protein [General function	92.4
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	87.18
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	80.01

>PF13962 PGG: Domain of unknown function

Probab=99.94  E-value=7.6e-27  Score=175.07  Aligned_cols=112  Identities=38%  Similarity=0.599  Sum_probs=97.7

Q ss_pred             hHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccccCCc-hhhHHHhHhHHHHHHHHHHHHHHHHhhcc
Q 042220          104 EGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIKNA-AFQAFVVSDVIAMVLSLSAVFIHFLTSTK  182 (255)
Q Consensus       104 ~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~~~~~-~f~~F~~~n~~a~~~S~~~~~~~~~~~~~  182 (255)
                      +||+++.+++++++|+||||+||+++++||||++++++ +.|+|++.+++ .|++|+++|++||++|+.++++++.....
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~-~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~   79 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD-DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDD   79 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            47999999999999999999999999999999999875 88999998777 99999999999999999999997732211


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042220          183 TLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAM  216 (255)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~s~~~m~~af~~~~~~~  216 (255)
                      ..+..++.+.++..++++++.+|++||++|+|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   80 FRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            1233456677899999999999999999999864

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=4.8e-20  Score=144.41  Aligned_cols=94  Identities=26%  Similarity=0.251  Sum_probs=73.3

Q ss_pred             CC-CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhcc
Q 042220            2 DK-SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQ   80 (255)
Q Consensus         2 d~-~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~   80 (255)
                      || |+....|. +|+||||+||..|+.+++++|++...-..+.+|..||||||+|+..|+  .++++.|+.+.+.++|..
T Consensus        26 ~~kSL~~r~dq-D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~--~evVk~Ll~r~~advna~  102 (226)
T KOG4412|consen   26 DPKSLNARDDQ-DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN--DEVVKELLNRSGADVNAT  102 (226)
T ss_pred             Chhhhhccccc-cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc--HHHHHHHhcCCCCCccee
Confidence            45 33334455 889999999999999999988864433346678889999999999998  888888885558889999


Q ss_pred             CCCCCchhHHHHHhhhhc
Q 042220           81 DVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        81 d~~G~TpLh~A~~~~~~~   98 (255)
                      ++.|.|+||+|+.++..+
T Consensus       103 tn~G~T~LHyAagK~r~e  120 (226)
T KOG4412|consen  103 TNGGQTCLHYAAGKGRLE  120 (226)
T ss_pred             cCCCcceehhhhcCChhh
Confidence            999999999988875544

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=4.7e-19  Score=138.88  Aligned_cols=108  Identities=25%  Similarity=0.241  Sum_probs=94.1

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHh-CCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIIST-CPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      ++.+|. .||||||+||..|+.|+++.|+.+ ++|+ +..++.|+|+||+|+.+|+  .++.++|+ +.|+.++.+|+.|
T Consensus        65 ~ddkDd-aGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r--~eIaqlLl-e~ga~i~~kD~~~  139 (226)
T KOG4412|consen   65 PDDKDD-AGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGR--LEIAQLLL-EKGALIRIKDKQG  139 (226)
T ss_pred             CCCccc-cCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCCh--hhHHHHHH-hcCCCCccccccc
Confidence            456677 999999999999999999999999 8888 8899999999999999999  99999999 7899999999999


Q ss_pred             CchhHHHHHhhhhc------cchhhhHHHHhhccchHHHH
Q 042220           85 NTPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVA  118 (255)
Q Consensus        85 ~TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA  118 (255)
                      +||||-|+..|..+      ......+|.++.+++.++.|
T Consensus       140 qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  140 QTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             CchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence            99999999886655      22233467777788877777

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.67  E-value=5.1e-17  Score=126.68  Aligned_cols=88  Identities=25%  Similarity=0.257  Sum_probs=84.4

Q ss_pred             CCCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC
Q 042220            2 DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD   81 (255)
Q Consensus         2 d~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d   81 (255)
                      +++.+|.+|+ +|.||||.|+.+||.++++.|+..+++. +.+...||||||.||+..+  .+++..|+ +.|+++|++.
T Consensus        86 ~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN--~~va~~LL-qhgaDVnA~t  160 (228)
T KOG0512|consen   86 KANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNN--FEVAGRLL-QHGADVNAQT  160 (228)
T ss_pred             cccccccccc-ccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccc--hhHHHHHH-hccCcccccc
Confidence            5788999999 9999999999999999999999999998 8999999999999999999  99999999 8999999999


Q ss_pred             CCCCchhHHHHHh
Q 042220           82 VNGNTPLHVLAAV   94 (255)
Q Consensus        82 ~~G~TpLh~A~~~   94 (255)
                      +...||||+|+..
T Consensus       161 ~g~ltpLhlaa~~  173 (228)
T KOG0512|consen  161 KGLLTPLHLAAGN  173 (228)
T ss_pred             cccchhhHHhhcc
Confidence            9999999999987

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=139.62  Aligned_cols=139  Identities=19%  Similarity=0.087  Sum_probs=81.8

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccc-cCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVD-ERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      .++..|+ +|.|+||+||.+++.+++++|+++++++ +..+ ..|.||||+|+++|+  ..++..|+ +.|++++.+|.+
T Consensus        70 ~v~~~D~-~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~--~~vv~lLl-qhGAdpt~~D~~  144 (600)
T KOG0509|consen   70 SVNNPDR-EGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGH--ISVVDLLL-QHGADPTLKDKQ  144 (600)
T ss_pred             CCCCCCc-CCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCc--HHHHHHHH-HcCCCCceecCC
Confidence            3455566 6666666666666666666666666666 4444 446666666666666  66666666 566666666666


Q ss_pred             CCchhHHHHHhhhhc---------------cchhhh------------------------HHH-HhhccchHHHHHHHHH
Q 042220           84 GNTPLHVLAAVLQKE---------------KTAVEE------------------------GEI-KELKPRHTIVATLIAT  123 (255)
Q Consensus        84 G~TpLh~A~~~~~~~---------------~~~~~~------------------------~~~-~~~~~~~~vvA~Liat  123 (255)
                      |.||+|+|++.+|.-               |+.|++                        .+. ++.+++.++.|++-..
T Consensus       145 G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN  224 (600)
T KOG0509|consen  145 GLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGN  224 (600)
T ss_pred             CCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCC
Confidence            666666666654432               333322                        112 2456777888877776


Q ss_pred             HHHHhccCCCCCccCCC-CCCCccccc
Q 042220          124 VTFAAGFTLPGGYWGKE-GPIPGTSIL  149 (255)
Q Consensus       124 vtf~a~l~~PGg~~~~~-~~~~g~~~~  149 (255)
                      .+-.. +-.-||...+. +.++.+|..
T Consensus       225 ~~~v~-Ll~~g~~~~d~~~~~g~tp~~  250 (600)
T KOG0509|consen  225 LTAVK-LLLEGGADLDKTNTNGKTPFD  250 (600)
T ss_pred             cceEe-hhhhcCCcccccccCCCCHHH
Confidence            66666 66666664433 333345544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.61  E-value=1.1e-15  Score=122.27  Aligned_cols=85  Identities=14%  Similarity=0.150  Sum_probs=49.0

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHH---HHHHHHhCCCcccccc-cCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRV---VNEIISTCPDCCKQVD-ERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD   81 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~---v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d   81 (255)
                      ++.+|+ +|+||||+|+.+|+.+.   +++|++.++++ +.+| ..|+||||+|+..++  .+++++|+++.+++++.+|
T Consensus        50 ~~~~d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~--~~iv~~Ll~~~gad~~~~d  125 (166)
T PHA02743         50 LHRYDH-HGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNTLLHIAASTKN--YELAEWLCRQLGVNLGAIN  125 (166)
T ss_pred             hhccCC-CCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCcHHHHHHHhCC--HHHHHHHHhccCCCccCcC
Confidence            344555 56666666666555432   55666666555 4555 356666666666666  6666665533456666666


Q ss_pred             CCCCchhHHHHHh
Q 042220           82 VNGNTPLHVLAAV   94 (255)
Q Consensus        82 ~~G~TpLh~A~~~   94 (255)
                      .+|+||||+|+..
T Consensus       126 ~~g~tpL~~A~~~  138 (166)
T PHA02743        126 YQHETAYHIAYKM  138 (166)
T ss_pred             CCCCCHHHHHHHc
Confidence            6666666666655

>PHA02741 hypothetical protein; Provisional

Probab=99.59  E-value=3e-15  Score=120.10  Aligned_cols=88  Identities=13%  Similarity=0.163  Sum_probs=78.2

Q ss_pred             cceeecCCCCCcHHHHHHHcCh----HHHHHHHHHhCCCccccccc-CCchHHHHHHHhCCchHHHHHHHhhhhhhhhhc
Q 042220            5 AACISDNDQKMTALLLAAGRGH----IRVVNEIISTCPDCCKQVDE-RGWNLLHFAMASSNLFQLHSRLRNRSVEMLINK   79 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~   79 (255)
                      .++.+|. +|+||||+|+..|+    .++++.|++.++++ +.+|. +|+||||+|+..++  .+++++|+...+++++.
T Consensus        52 ~in~~d~-~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~~g~TpLh~A~~~~~--~~iv~~Ll~~~g~~~~~  127 (169)
T PHA02741         52 ALNATDD-AGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEMLEGDTALHLAAHRRD--HDLAEWLCCQPGIDLHF  127 (169)
T ss_pred             hhhccCC-CCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcCCCCCHHHHHHHcCC--HHHHHHHHhCCCCCCCc
Confidence            4677888 99999999999998    58899999999998 77775 89999999999999  99999998446899999


Q ss_pred             cCCCCCchhHHHHHhhh
Q 042220           80 QDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        80 ~d~~G~TpLh~A~~~~~   96 (255)
                      +|.+|.||||+|...++
T Consensus       128 ~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741        128 CNADNKSPFELAIDNED  144 (169)
T ss_pred             CCCCCCCHHHHHHHCCC
Confidence            99999999999998843

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.57  E-value=3.3e-15  Score=139.47  Aligned_cols=131  Identities=19%  Similarity=0.134  Sum_probs=107.8

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhh-hhhhhccCC
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSV-EMLINKQDV   82 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~-~~~i~~~d~   82 (255)
                      ..+|..|+ +|.||||+||+.|+++.++.|+..|+++ +.+++++.||||.|+.+|+  ..+++-|+++. ....|..|.
T Consensus       264 elv~~~d~-dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~--~ntv~rLL~~~~~rllne~D~  339 (929)
T KOG0510|consen  264 ELVNDEDN-DGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGR--INTVERLLQESDTRLLNESDL  339 (929)
T ss_pred             HHhhcccc-cCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHccc--HHHHHHHHhCcCccccccccc
Confidence            35788899 9999999999999999999999999998 8999999999999999999  99999999633 367899999


Q ss_pred             CCCchhHHHHHhhhhc-----cchhhh-H---HHHhhccchHHHHHHHHHHHHHhccCCCCCccC
Q 042220           83 NGNTPLHVLAAVLQKE-----KTAVEE-G---EIKELKPRHTIVATLIATVTFAAGFTLPGGYWG  138 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~~-----~~~~~~-~---~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~  138 (255)
                      .|.||||+|+++||.+     -++|.. .   .....+++.++.|++-.......-|--.|.+.+
T Consensus       340 ~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~  404 (929)
T KOG0510|consen  340 HGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIG  404 (929)
T ss_pred             cCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCcee
Confidence            9999999999998876     111111 1   225567888888887777777776666777763

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.57  E-value=1.2e-15  Score=120.31  Aligned_cols=86  Identities=10%  Similarity=0.028  Sum_probs=57.9

Q ss_pred             eeecCCCCCcHHHHHHHcChH---HHHHHHHHhCCCcccccc-cCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            7 CISDNDQKMTALLLAAGRGHI---RVVNEIISTCPDCCKQVD-ERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      +.+|+ +|+||||+|+..|+.   ++++.|++.++++ +.+| .+|+||||+|+..++  .+++++|+.+.+.+++.+|.
T Consensus        49 ~~~d~-~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~--~~i~~~Ll~~~g~d~n~~~~  124 (154)
T PHA02736         49 LEYNR-HGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQN--YELATWLCNQPGVNMEILNY  124 (154)
T ss_pred             HHhcC-CCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCC--HHHHHHHHhCCCCCCccccC
Confidence            34455 667777777766654   3566677777776 5565 467777777777777  77777776334677777777


Q ss_pred             CCCchhHHHHHhhh
Q 042220           83 NGNTPLHVLAAVLQ   96 (255)
Q Consensus        83 ~G~TpLh~A~~~~~   96 (255)
                      .|.||||+|+..++
T Consensus       125 ~g~tpL~~A~~~~~  138 (154)
T PHA02736        125 AFKTPYYVACERHD  138 (154)
T ss_pred             CCCCHHHHHHHcCC
Confidence            77777777776533

>PHA02791 ankyrin-like protein; Provisional

Probab=99.56  E-value=8.3e-15  Score=126.70  Aligned_cols=85  Identities=18%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +.+|. +|+||||+|++.|+.++++.|++.+++. +.+  +|+||||+|+..|+  .++++.|+ +.|++++.+|.+|+|
T Consensus        24 ~~~D~-~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~--~eiV~lLL-~~Gadvn~~d~~G~T   96 (284)
T PHA02791         24 FKADV-HGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLED--TKIVKILL-FSGMDDSQFDDKGNT   96 (284)
T ss_pred             CCCCC-CCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCC--HHHHHHHH-HCCCCCCCCCCCCCC
Confidence            45677 8888888888888888888888888766 433  36788888888888  88888887 678888888888888


Q ss_pred             hhHHHHHhhhhc
Q 042220           87 PLHVLAAVLQKE   98 (255)
Q Consensus        87 pLh~A~~~~~~~   98 (255)
                      |||+|+..++.+
T Consensus        97 pLh~Aa~~g~~e  108 (284)
T PHA02791         97 ALYYAVDSGNMQ  108 (284)
T ss_pred             HHHHHHHcCCHH
Confidence            888888876654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.56  E-value=7.4e-15  Score=136.12  Aligned_cols=137  Identities=18%  Similarity=0.104  Sum_probs=99.9

Q ss_pred             ceeecCCC-CCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            6 ACISDNDQ-KMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         6 v~~~d~~~-G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      ++.+|. + |+||||+|+.+|+.++++.|+++++++ +.+|..|+||||.|+..++  .++++.|+ +.|++++.+|.+|
T Consensus       160 in~~~~-~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~--~~iv~~Ll-~~ga~in~~d~~g  234 (477)
T PHA02878        160 INMKDR-HKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYN--KPIVHILL-ENGASTDARDKCG  234 (477)
T ss_pred             CCccCC-CCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCC--HHHHHHHH-HcCCCCCCCCCCC
Confidence            566777 6 999999999999999999999999998 8899999999999999999  99999999 7899999999999


Q ss_pred             CchhHHHHHh-hhhc------cchhhhHHHH-hhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccc
Q 042220           85 NTPLHVLAAV-LQKE------KTAVEEGEIK-ELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        85 ~TpLh~A~~~-~~~~------~~~~~~~~~~-~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      +||||+|+.. ++.+      +......... ..+.++++.|  ........-+...|...+..+.++-+|+.
T Consensus       235 ~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~  305 (477)
T PHA02878        235 NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLS  305 (477)
T ss_pred             CCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            9999999975 2322      1100000001 1244555554  22222233333467666555555667765

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.56  E-value=1e-14  Score=133.67  Aligned_cols=88  Identities=23%  Similarity=0.233  Sum_probs=79.9

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ .|.||||+|+..|+.++++.|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.|.+++.+|.+|+
T Consensus       117 ~n~~~~-~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~--~~iv~~Ll-~~g~~~n~~~~~g~  191 (434)
T PHA02874        117 VNIKDA-ELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNF--FDIIKLLL-EKGAYANVKDNNGE  191 (434)
T ss_pred             CCCCCC-CCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCc--HHHHHHHH-HCCCCCCCCCCCCC
Confidence            456778 8999999999999999999999999998 7889999999999999999  99999998 78899999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       192 tpL~~A~~~g~~~  204 (434)
T PHA02874        192 SPLHNAAEYGDYA  204 (434)
T ss_pred             CHHHHHHHcCCHH
Confidence            9999999987654

>PHA02741 hypothetical protein; Provisional

Probab=99.55  E-value=5.4e-15  Score=118.61  Aligned_cols=89  Identities=17%  Similarity=0.166  Sum_probs=75.8

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHh------CCCcccccccCCchHHHHHHHhCCchH----HHHHHHhhhh
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIIST------CPDCCKQVDERGWNLLHFAMASSNLFQ----LHSRLRNRSV   73 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~------~~~~~~~~d~~G~t~Lh~A~~~g~~~~----~~~~~Ll~~~   73 (255)
                      ..++.+|+ +|+||||+|++.|+.++++.|+..      ++++ +.+|..|+||||+|+..++  .    +++++|+ +.
T Consensus        12 ~~~~~~~~-~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~--~~~~~~ii~~Ll-~~   86 (169)
T PHA02741         12 EMIAEKNS-EGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHE--AQLAAEIIDHLI-EL   86 (169)
T ss_pred             HHhhcccc-CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCC--hHHHHHHHHHHH-Hc
Confidence            34667888 999999999999999999998643      3455 7889999999999999998  5    6778888 78


Q ss_pred             hhhhhccCC-CCCchhHHHHHhhhh
Q 042220           74 EMLINKQDV-NGNTPLHVLAAVLQK   97 (255)
Q Consensus        74 ~~~i~~~d~-~G~TpLh~A~~~~~~   97 (255)
                      |+++|.+|. +|+||||+|++.++.
T Consensus        87 gadin~~~~~~g~TpLh~A~~~~~~  111 (169)
T PHA02741         87 GADINAQEMLEGDTALHLAAHRRDH  111 (169)
T ss_pred             CCCCCCCCcCCCCCHHHHHHHcCCH
Confidence            999999985 999999999998443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.55  E-value=8.3e-15  Score=133.95  Aligned_cols=89  Identities=27%  Similarity=0.188  Sum_probs=79.2

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .+|+.+..-|.||||+|+++|+..+++.|+++|+|+ +.+|.+|.||+|+|++.++  ...+.+++ ..++++|.+|.+|
T Consensus       103 dvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~--~~~vayll-~~~~d~d~~D~~g  178 (600)
T KOG0509|consen  103 DVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGH--TALVAYLL-SKGADIDLRDNNG  178 (600)
T ss_pred             CccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCc--hHHHHHHH-HhcccCCCcCCCC
Confidence            456666436889999999999999999999999999 8999999999999999999  99999988 6789999999999


Q ss_pred             CchhHHHHHhhhh
Q 042220           85 NTPLHVLAAVLQK   97 (255)
Q Consensus        85 ~TpLh~A~~~~~~   97 (255)
                      .||||+|+.++..
T Consensus       179 rTpLmwAaykg~~  191 (600)
T KOG0509|consen  179 RTPLMWAAYKGFA  191 (600)
T ss_pred             CCHHHHHHHhccc
Confidence            9999999988543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.53  E-value=8.1e-14  Score=115.59  Aligned_cols=84  Identities=12%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             ceeecCCCCCcHHHHHHHcC--hHHHHHHHHHhCCCcccccc-cCCchHHHHHHHh---CCchHHHHHHHhhhhhhhhhc
Q 042220            6 ACISDNDQKMTALLLAAGRG--HIRVVNEIISTCPDCCKQVD-ERGWNLLHFAMAS---SNLFQLHSRLRNRSVEMLINK   79 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~---g~~~~~~~~~Ll~~~~~~i~~   79 (255)
                      ++.+|+ .|.||||+|+.++  +.++++.|+++++++ +.+| .+|+||||+|+..   ++  .+++++|+ +.|+++|.
T Consensus        44 ~n~~~~-~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~--~eiv~~Ll-~~gadin~  118 (209)
T PHA02859         44 VNDCND-LYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVE--PEILKILI-DSGSSITE  118 (209)
T ss_pred             hhccCc-cCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCcccc--HHHHHHHH-HCCCCCCC
Confidence            466788 9999999999854  899999999999998 6676 5899999998864   36  89999998 78999999


Q ss_pred             cCCCCCchhHHHHHh
Q 042220           80 QDVNGNTPLHVLAAV   94 (255)
Q Consensus        80 ~d~~G~TpLh~A~~~   94 (255)
                      +|.+|.||||+|+..
T Consensus       119 ~d~~G~TpLh~a~~~  133 (209)
T PHA02859        119 EDEDGKNLLHMYMCN  133 (209)
T ss_pred             cCCCCCCHHHHHHHh
Confidence            999999999998764

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.53  E-value=1.7e-14  Score=131.27  Aligned_cols=82  Identities=16%  Similarity=0.107  Sum_probs=45.6

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      +++||||.|++.|+.++++.|++.+++..+..+.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|.||||+|+
T Consensus        67 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~--~~iv~~Ll-~~gad~~~~~~~g~tpLh~A~  143 (413)
T PHA02875         67 DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKK--LDIMKLLI-ARGADPDIPNTDKFSPLHLAV  143 (413)
T ss_pred             CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCC--HHHHHHHH-hCCCCCCCCCCCCCCHHHHHH
Confidence            334444444444444444444444433323334556666666666666  66666666 556666666666666666666


Q ss_pred             Hhhhh
Q 042220           93 AVLQK   97 (255)
Q Consensus        93 ~~~~~   97 (255)
                      +.++.
T Consensus       144 ~~~~~  148 (413)
T PHA02875        144 MMGDI  148 (413)
T ss_pred             HcCCH
Confidence            65444

>PHA02791 ankyrin-like protein; Provisional

Probab=99.53  E-value=1.9e-14  Score=124.43  Aligned_cols=130  Identities=12%  Similarity=-0.015  Sum_probs=104.4

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC-CchhHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG-NTPLHVL   91 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G-~TpLh~A   91 (255)
                      +|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|+.| .||||+|
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~--~eivk~Ll-~~gadin~~~~~g~~TpL~~A  135 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGN--MQTVKLFV-KKNWRLMFYGKTGWKTSFYHA  135 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCcCccCCCCCcHHHHHH
Confidence            6789999999999999999999999998 8899999999999999999  99999999 7899999999988 5999999


Q ss_pred             HHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccc
Q 042220           92 AAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTS  147 (255)
Q Consensus        92 ~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~  147 (255)
                      +..++.+      +..... .-...++++++.|+.-.....+..|-..|+..+..+..+++|
T Consensus       136 a~~g~~eivk~LL~~~~~~-~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~  196 (284)
T PHA02791        136 VMLNDVSIVSYFLSEIPST-FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP  196 (284)
T ss_pred             HHcCCHHHHHHHHhcCCcc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCCh
Confidence            9997765      211110 000125788888888877777777777787766555555555

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.53  E-value=6e-13  Score=124.61  Aligned_cols=89  Identities=24%  Similarity=0.264  Sum_probs=74.2

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHH-hCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhh---cc
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIIS-TCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLIN---KQ   80 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~---~~   80 (255)
                      .++.+++ ++.||||.||++|+.+.++.|++ .+-...+..|..|+||||+|++.||  ..+++.|+ +.|++.+   ..
T Consensus       298 ~I~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH--~~v~qlLl-~~GA~~~~~~e~  373 (929)
T KOG0510|consen  298 SINSKNK-DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH--DRVVQLLL-NKGALFLNMSEA  373 (929)
T ss_pred             cccccCC-CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH--HHHHHHHH-hcChhhhccccc
Confidence            3567788 89999999999999999999998 5555557788889999999999999  99999988 6787766   56


Q ss_pred             CCCCCchhHHHHHhhhh
Q 042220           81 DVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        81 d~~G~TpLh~A~~~~~~   97 (255)
                      |.+|+||||.|++.|+.
T Consensus       374 D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  374 DSDGNTALHLAAKYGNT  390 (929)
T ss_pred             ccCCchhhhHHHHhccH
Confidence            99999999999987553

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.51  E-value=3.8e-14  Score=128.93  Aligned_cols=87  Identities=20%  Similarity=0.167  Sum_probs=79.1

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +..++ +|+||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+  .++++.|+ +.|.+++.+|..|+|
T Consensus        96 ~~~~~-~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~--~~~v~~Ll-~~g~~~~~~d~~g~T  170 (413)
T PHA02875         96 DVFYK-DGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGD--IKGIELLI-DHKACLDIEDCCGCT  170 (413)
T ss_pred             ccccC-CCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-hcCCCCCCCCCCCCC
Confidence            34566 8999999999999999999999999998 7889999999999999999  99999999 789999999999999


Q ss_pred             hhHHHHHhhhhc
Q 042220           87 PLHVLAAVLQKE   98 (255)
Q Consensus        87 pLh~A~~~~~~~   98 (255)
                      |||+|+..++.+
T Consensus       171 pL~~A~~~g~~e  182 (413)
T PHA02875        171 PLIIAMAKGDIA  182 (413)
T ss_pred             HHHHHHHcCCHH
Confidence            999999987654

>PHA02946 ankyin-like protein; Provisional

Probab=99.51  E-value=3.8e-14  Score=130.23  Aligned_cols=84  Identities=18%  Similarity=0.163  Sum_probs=69.5

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhc-cCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINK-QDVN   83 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~-~d~~   83 (255)
                      .++.+|. +|+||||+|++.|+.++++.|+++++++ +.+|.+|+||||+|+..++...+++++|+ +.|+++|. +|.+
T Consensus        64 dvn~~d~-~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~~Gadin~~~d~~  140 (446)
T PHA02946         64 SPNETDD-DGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLV-QYGAKINNSVDEE  140 (446)
T ss_pred             CCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHH-HcCCCcccccCCC
Confidence            3577888 9999999999999999999999999998 78999999999999876531157788887 67888874 5777


Q ss_pred             CCchhHHH
Q 042220           84 GNTPLHVL   91 (255)
Q Consensus        84 G~TpLh~A   91 (255)
                      |.||||.|
T Consensus       141 g~tpL~aa  148 (446)
T PHA02946        141 GCGPLLAC  148 (446)
T ss_pred             CCcHHHHH
Confidence            88888744

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.50  E-value=3.2e-14  Score=119.32  Aligned_cols=89  Identities=22%  Similarity=0.244  Sum_probs=81.4

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      ..|+.|. .|.+|||+||+.||..+++.|+.+++.+ +..+.-..||||+|+.+||  .++++.|+ +..+++|+.|.+|
T Consensus        26 dln~gdd-hgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahgh--rdivqkll-~~kadvnavnehg  100 (448)
T KOG0195|consen   26 DLNVGDD-HGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGH--RDIVQKLL-SRKADVNAVNEHG  100 (448)
T ss_pred             ccccccc-cCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhccc--HHHHHHHH-HHhcccchhhccC
Confidence            3577788 9999999999999999999999999998 7777778899999999999  99999999 7889999999999


Q ss_pred             CchhHHHHHhhhhc
Q 042220           85 NTPLHVLAAVLQKE   98 (255)
Q Consensus        85 ~TpLh~A~~~~~~~   98 (255)
                      +||||||+-.|+.+
T Consensus       101 ntplhyacfwgydq  114 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQ  114 (448)
T ss_pred             CCchhhhhhhcHHH
Confidence            99999999887654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.50  E-value=7.9e-14  Score=121.01  Aligned_cols=84  Identities=14%  Similarity=0.073  Sum_probs=41.8

Q ss_pred             ecCCCCCc-HHHHHHHcChHHHHHHHHHhCCCccccc----ccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC-C
Q 042220            9 SDNDQKMT-ALLLAAGRGHIRVVNEIISTCPDCCKQV----DERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD-V   82 (255)
Q Consensus         9 ~d~~~G~t-pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~----d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d-~   82 (255)
                      +|+ +|+| +||.|++.|+.++++.|+++|+++ +.+    |..|.||||+|+..++  .+++++|+ +.|+++|.++ .
T Consensus        28 ~d~-~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~--~eivklLL-~~GADVN~~~~~  102 (300)
T PHA02884         28 KNK-ICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDN--DDAAKLLI-RYGADVNRYAEE  102 (300)
T ss_pred             cCc-CCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCcCcccCC
Confidence            444 4443 233334445555555555555554 333    2345555555555555  55555555 4555555542 3


Q ss_pred             CCCchhHHHHHhhhh
Q 042220           83 NGNTPLHVLAAVLQK   97 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~   97 (255)
                      .|.||||+|+..++.
T Consensus       103 ~g~TpLh~Aa~~~~~  117 (300)
T PHA02884        103 AKITPLYISVLHGCL  117 (300)
T ss_pred             CCCCHHHHHHHcCCH
Confidence            455555555554443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.49  E-value=1.3e-13  Score=98.49  Aligned_cols=72  Identities=31%  Similarity=0.335  Sum_probs=64.7

Q ss_pred             HHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhhh
Q 042220           18 LLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        18 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~   97 (255)
                      ||+|++.|+.++++.|++.+++. +.    |+||||+|+.+|+  .+++++|+ +.|.+++.+|.+|+||||+|+.+++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~--~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGN--LEIVKLLL-ENGADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTT--HHHHHHHH-HTTTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCC--HHHHHHHH-HhcccccccCCCCCCHHHHHHHcCCH
Confidence            79999999999999999988776 32    9999999999999  99999999 78999999999999999999998554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.49  E-value=5.2e-14  Score=112.60  Aligned_cols=88  Identities=23%  Similarity=0.195  Sum_probs=73.4

Q ss_pred             ceeecCCCCCcHHHHHHHcChH----HHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHH---HHHHhhhhhhhhh
Q 042220            6 ACISDNDQKMTALLLAAGRGHI----RVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLH---SRLRNRSVEMLIN   78 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~---~~~Ll~~~~~~i~   78 (255)
                      ++..|+ ++.+++|.|++.|+.    ++++.|.+.+++. +.+|.+|+||||+|+.+|+  .+.   +++|+ +.|+++|
T Consensus        13 ~~~~~~-~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~--~~~~~~i~~Ll-~~Gadin   87 (166)
T PHA02743         13 AVEIDE-DEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDR--ANAVMKIELLV-NMGADIN   87 (166)
T ss_pred             Hhhhcc-CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCc--cCHHHHHHHHH-HcCCCCC
Confidence            345667 788999999999998    5566677777776 7889999999999999988  554   78888 7899999


Q ss_pred             ccC-CCCCchhHHHHHhhhhc
Q 042220           79 KQD-VNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        79 ~~d-~~G~TpLh~A~~~~~~~   98 (255)
                      .+| ..|+||||+|+..++.+
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~  108 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYE  108 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHH
Confidence            998 58999999999986643

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.49  E-value=2.1e-13  Score=124.97  Aligned_cols=86  Identities=19%  Similarity=0.155  Sum_probs=79.9

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|.||||+|++.|+.++++.|++++++. +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|.
T Consensus       150 ~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~--~~iv~~Ll-~~g~~i~~~~~~g~  224 (434)
T PHA02874        150 VNIEDD-NGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGD--YACIKLLI-DHGNHIMNKCKNGF  224 (434)
T ss_pred             CCCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-hCCCCCcCCCCCCC
Confidence            466788 9999999999999999999999999988 7889999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhh
Q 042220           86 TPLHVLAAVLQ   96 (255)
Q Consensus        86 TpLh~A~~~~~   96 (255)
                      ||||.|+..++
T Consensus       225 TpL~~A~~~~~  235 (434)
T PHA02874        225 TPLHNAIIHNR  235 (434)
T ss_pred             CHHHHHHHCCh
Confidence            99999998643

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.47  E-value=9.6e-14  Score=128.47  Aligned_cols=87  Identities=24%  Similarity=0.298  Sum_probs=74.3

Q ss_pred             eeecCCCCCcHHHHHH--HcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhC--CchHHHHHHHhhhhhhhhhccCC
Q 042220            7 CISDNDQKMTALLLAA--GRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASS--NLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      +.+|. .|.||||+|+  ..|+.++++.|++++++. +.+|..|+||||+|+..+  +  .+++++|+ +.|++++.+|.
T Consensus       100 ~~~d~-~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~--~~iv~~Ll-~~g~din~~d~  174 (480)
T PHA03100        100 NAPDN-NGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKID--LKILKLLI-DKGVDINAKNR  174 (480)
T ss_pred             CCCCC-CCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCCh--HHHHHHHH-HCCCCcccccC
Confidence            66777 8899999999  889999999999888887 778888999999999888  8  88888888 77888888888


Q ss_pred             CCCchhHHHHHhhhhc
Q 042220           83 NGNTPLHVLAAVLQKE   98 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~~   98 (255)
                      +|+||||+|++.++.+
T Consensus       175 ~g~tpL~~A~~~~~~~  190 (480)
T PHA03100        175 YGYTPLHIAVEKGNID  190 (480)
T ss_pred             CCCCHHHHHHHhCCHH
Confidence            8999999998886544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.46  E-value=1.3e-13  Score=118.70  Aligned_cols=128  Identities=20%  Similarity=0.148  Sum_probs=96.7

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcc-------------------------------------ccc-cc
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCC-------------------------------------KQV-DE   46 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~-------------------------------------~~~-d~   46 (255)
                      .+|..|. +|+|+|||++.+++.++|+.|+..+-.-.                                     |.+ ..
T Consensus       260 vVNlaDs-NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADS-NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQ  338 (452)
T ss_pred             HhhhhcC-CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhh
Confidence            3678888 89999999999999999988887643211                                     112 23


Q ss_pred             CCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhhhc----------------cchhhhHHHHhh
Q 042220           47 RGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKE----------------KTAVEEGEIKEL  110 (255)
Q Consensus        47 ~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~~----------------~~~~~~~~~~~~  110 (255)
                      .|+|+|++|+.+|+  .++++.|+ .+|+++|.+|.+|.|+|+.|+++||+|                |..|-+..+-.-
T Consensus       339 ~gQTALMLAVSHGr--~d~vk~LL-acgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  339 HGQTALMLAVSHGR--VDMVKALL-ACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL  415 (452)
T ss_pred             hcchhhhhhhhcCc--HHHHHHHH-HccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence            48899999999999  99999999 899999999999999999999999987                455555444443


Q ss_pred             ccchH-HHHHHHHHHHHHhccCCCCCc
Q 042220          111 KPRHT-IVATLIATVTFAAGFTLPGGY  136 (255)
Q Consensus       111 ~~~~~-vvA~Liatvtf~a~l~~PGg~  136 (255)
                      ...+. +...|-+.+.|...+.|--|.
T Consensus       416 eagh~eIa~mlYa~~n~~~s~~p~s~~  442 (452)
T KOG0514|consen  416 EAGHREIAVMLYAHMNIKRSKLPNSGD  442 (452)
T ss_pred             hcCchHHHHHHHHHHHhhhhcCCCCCC
Confidence            34443 334455888888887764443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.45  E-value=1.4e-13  Score=135.29  Aligned_cols=88  Identities=20%  Similarity=0.197  Sum_probs=76.2

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHH--------------------
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLH--------------------   65 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~--------------------   65 (255)
                      ++.+|. +|+||||+|+.+|+.++++.|+++++++ +.+|.+|+||||+|+..|+  .++                    
T Consensus       551 ~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~--~~iv~~L~~~~~~~~~~~~~~~L  626 (823)
T PLN03192        551 PDIGDS-KGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKH--HKIFRILYHFASISDPHAAGDLL  626 (823)
T ss_pred             CCCCCC-CCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCC--HHHHHHHHhcCcccCcccCchHH
Confidence            567888 9999999999999999999999999998 8899999999997776666  444                    


Q ss_pred             -----------HHHHhhhhhhhhhccCCCCCchhHHHHHhhhhc
Q 042220           66 -----------SRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        66 -----------~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~~   98 (255)
                                 ++.|+ +.|+++|.+|.+|+||||+|++.++.+
T Consensus       627 ~~Aa~~g~~~~v~~Ll-~~Gadin~~d~~G~TpLh~A~~~g~~~  669 (823)
T PLN03192        627 CTAAKRNDLTAMKELL-KQGLNVDSEDHQGATALQVAMAEDHVD  669 (823)
T ss_pred             HHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence                       45555 678899999999999999999987765

>PHA03095 ankyrin-like protein; Provisional

Probab=99.45  E-value=1.6e-13  Score=126.69  Aligned_cols=88  Identities=20%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             ceeecCCCCCcHHHHHHHcChH--HHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHI--RVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~--~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      ++.+|. .|+||||+|+..|+.  ++++.+++.+.++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+
T Consensus       215 ~~~~d~-~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~--~~~v~~LL-~~gad~n~~~~~  289 (471)
T PHA03095        215 PAATDM-LGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNN--PRACRRLI-ALGADINAVSSD  289 (471)
T ss_pred             CcccCC-CCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCcccCCC
Confidence            456777 888888888888764  5777888888887 7788888899999988888  88888888 678888888888


Q ss_pred             CCchhHHHHHhhhhc
Q 042220           84 GNTPLHVLAAVLQKE   98 (255)
Q Consensus        84 G~TpLh~A~~~~~~~   98 (255)
                      |+||||+|++.++.+
T Consensus       290 g~tpl~~A~~~~~~~  304 (471)
T PHA03095        290 GNTPLSLMVRNNNGR  304 (471)
T ss_pred             CCCHHHHHHHhCCHH
Confidence            899999888876543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.44  E-value=3e-13  Score=112.20  Aligned_cols=87  Identities=18%  Similarity=0.152  Sum_probs=72.2

Q ss_pred             ceeecCCCCCcHHHHHHHc---ChHHHHHHHHHhCCCcccccccCCchHHHHHHHh--CCchHHHHHHHhhhhhhhhhcc
Q 042220            6 ACISDNDQKMTALLLAAGR---GHIRVVNEIISTCPDCCKQVDERGWNLLHFAMAS--SNLFQLHSRLRNRSVEMLINKQ   80 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~--g~~~~~~~~~Ll~~~~~~i~~~   80 (255)
                      ++.+|+++|+||||+|+..   ++.++++.|+++++++ +.+|.+|+||||+|+..  ++  .+++++|+ +.|++++.+
T Consensus        79 vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~--~~iv~~Li-~~gadin~~  154 (209)
T PHA02859         79 VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVR--INVIKLLI-DSGVSFLNK  154 (209)
T ss_pred             CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCC--HHHHHHHH-HcCCCcccc
Confidence            4556532799999998764   4799999999999998 88999999999998764  57  89999998 789999999


Q ss_pred             CCCCCchhHHH-HHhhh
Q 042220           81 DVNGNTPLHVL-AAVLQ   96 (255)
Q Consensus        81 d~~G~TpLh~A-~~~~~   96 (255)
                      |.+|+||||.+ +..++
T Consensus       155 d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859        155 DFDNNNILYSYILFHSD  171 (209)
T ss_pred             cCCCCcHHHHHHHhcCC
Confidence            99999999965 44433

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.44  E-value=2.8e-13  Score=87.79  Aligned_cols=54  Identities=26%  Similarity=0.311  Sum_probs=45.3

Q ss_pred             CCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHh
Q 042220           14 KMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN   70 (255)
Q Consensus        14 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll   70 (255)
                      |+||||+|++.|+.+++++|++++.++ +.+|++|+||||+|+..|+  .+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~--~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGN--IDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT---HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccC--HHHHHHHC
Confidence            789999999999999999999999998 7789999999999999999  99999875

...

>PHA03095 ankyrin-like protein; Provisional

Probab=99.44  E-value=5.5e-13  Score=123.08  Aligned_cols=85  Identities=20%  Similarity=0.202  Sum_probs=78.9

Q ss_pred             cceeecCCCCCcHHHHHHHcC---hHHHHHHHHHhCCCcccccccCCchHHHHHHHhC-CchHHHHHHHhhhhhhhhhcc
Q 042220            5 AACISDNDQKMTALLLAAGRG---HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASS-NLFQLHSRLRNRSVEMLINKQ   80 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g-~~~~~~~~~Ll~~~~~~i~~~   80 (255)
                      .++.+|+ .|.||||+|+..|   +.++++.|++.++++ +.+|..|+||||+|+..+ +  .+++++|+ +.|++++.+
T Consensus        39 ~vn~~~~-~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~--~~iv~lLl-~~ga~in~~  113 (471)
T PHA03095         39 DVNFRGE-YGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATT--LDVIKLLI-KAGADVNAK  113 (471)
T ss_pred             CcccCCC-CCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCc--HHHHHHHH-HcCCCCCCC
Confidence            4577888 9999999999998   999999999999998 889999999999999999 7  89999998 789999999


Q ss_pred             CCCCCchhHHHHHh
Q 042220           81 DVNGNTPLHVLAAV   94 (255)
Q Consensus        81 d~~G~TpLh~A~~~   94 (255)
                      |.+|+||||+|+..
T Consensus       114 ~~~g~tpLh~a~~~  127 (471)
T PHA03095        114 DKVGRTPLHVYLSG  127 (471)
T ss_pred             CCCCCCHHHHHhhC
Confidence            99999999999943

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.44  E-value=1.2e-13  Score=135.38  Aligned_cols=88  Identities=22%  Similarity=0.277  Sum_probs=82.4

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+++ +|.||||.|+.+|+.++|+.|+++++++ +.+|+.|+||||.|+..|+  .+++++|+ +.|+++|..|.+|+
T Consensus       533 v~~~~~-r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~--~~i~~LLl-k~GA~vna~d~~g~  607 (1143)
T KOG4177|consen  533 VDLRTG-RGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGH--NDIAELLL-KHGASVNAADLDGF  607 (1143)
T ss_pred             eehhcc-cccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcCh--HHHHHHHH-HcCCCCCcccccCc
Confidence            456667 8999999999999999999999999999 8899999999999999999  99999999 89999999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       608 TpL~iA~~lg~~~  620 (1143)
T KOG4177|consen  608 TPLHIAVRLGYLS  620 (1143)
T ss_pred             chhHHHHHhcccc
Confidence            9999999987654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.43  E-value=1.1e-13  Score=90.43  Aligned_cols=56  Identities=27%  Similarity=0.296  Sum_probs=27.9

Q ss_pred             HHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHH
Q 042220           33 IISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVL   91 (255)
Q Consensus        33 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A   91 (255)
                      |+++++...+.+|..|+||||+|+.+|+  .+++++|+ +.+++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~--~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGH--SEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT---HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCc--HHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            4556633337778888888888888888  88888888 77888888888888888876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.43  E-value=3.7e-13  Score=129.18  Aligned_cols=84  Identities=17%  Similarity=0.096  Sum_probs=56.3

Q ss_pred             cceeecCCCCCcHHHHHHHcCh--HHHHHHHHHhCCCcccccccCCchHHHHHH--------------------------
Q 042220            5 AACISDNDQKMTALLLAAGRGH--IRVVNEIISTCPDCCKQVDERGWNLLHFAM--------------------------   56 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~--------------------------   56 (255)
                      -++.+|+ +|+||||+|++.|+  .++++.|+++|+++ +.+|.+|+||||.|+                          
T Consensus       204 DVN~kD~-~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~  281 (764)
T PHA02716        204 NVNLQNN-HLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNI  281 (764)
T ss_pred             CCCCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccc
Confidence            3456666 77777777777764  36777777777776 667777777777543                          


Q ss_pred             -----------HhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHH
Q 042220           57 -----------ASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAA   93 (255)
Q Consensus        57 -----------~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~   93 (255)
                                 +.|+  .++++.|+ +.|++++.+|.+|+||||+|+.
T Consensus       282 ~~~L~~~i~AA~~g~--leiVklLL-e~GAdIN~kD~~G~TPLH~Aaa  326 (764)
T PHA02716        282 PMILHSYITLARNID--ISVVYSFL-QPGVKLHYKDSAGRTCLHQYIL  326 (764)
T ss_pred             hhhhHHHHHHHHcCC--HHHHHHHH-hCCCceeccCCCCCCHHHHHHH
Confidence                       2344  55666666 5677777777777777777654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.43  E-value=7.2e-14  Score=110.19  Aligned_cols=88  Identities=18%  Similarity=0.146  Sum_probs=67.5

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhC------CCcccccccCCchHHHHHHHhCCchH---HHHHHHhhhhh
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTC------PDCCKQVDERGWNLLHFAMASSNLFQ---LHSRLRNRSVE   74 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~------~~~~~~~d~~G~t~Lh~A~~~g~~~~---~~~~~Ll~~~~   74 (255)
                      ...+.+|+ +|+||||+|++.|+.+  +.+...+      +.....+|.+|+||||+|+..++  .   +.+++|+ +.|
T Consensus         8 ~~~~~~d~-~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~--~~~~e~v~~Ll-~~g   81 (154)
T PHA02736          8 IFASEPDI-EGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDK--ADPQEKLKLLM-EWG   81 (154)
T ss_pred             hHHHhcCC-CCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCc--hhHHHHHHHHH-HcC
Confidence            34567788 9999999999999843  2222211      11224578999999999999998  5   4577887 789


Q ss_pred             hhhhccC-CCCCchhHHHHHhhhh
Q 042220           75 MLINKQD-VNGNTPLHVLAAVLQK   97 (255)
Q Consensus        75 ~~i~~~d-~~G~TpLh~A~~~~~~   97 (255)
                      +++|.+| .+|+||||+|++.++.
T Consensus        82 adin~~~~~~g~T~Lh~A~~~~~~  105 (154)
T PHA02736         82 ADINGKERVFGNTPLHIAVYTQNY  105 (154)
T ss_pred             CCccccCCCCCCcHHHHHHHhCCH
Confidence            9999998 4899999999998543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.42  E-value=7.2e-14  Score=123.85  Aligned_cols=88  Identities=19%  Similarity=0.164  Sum_probs=80.9

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      +|.... .+.|||..||.-|+.|++++|+++++|+ +..|+.|.|.||+|+.+|+  .+++++|+ +.|+++|+++..||
T Consensus       110 VN~tT~-TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh--~~I~qyLl-e~gADvn~ks~kGN  184 (615)
T KOG0508|consen  110 VNDTTR-TNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGH--VDIAQYLL-EQGADVNAKSYKGN  184 (615)
T ss_pred             cccccc-cCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCc--hHHHHHHH-HhCCCcchhcccCc
Confidence            444444 6679999999999999999999999999 8999999999999999999  99999999 89999999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      |+||.+++.|+.+
T Consensus       185 TALH~caEsG~vd  197 (615)
T KOG0508|consen  185 TALHDCAESGSVD  197 (615)
T ss_pred             hHHHhhhhcccHH
Confidence            9999999998876

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.42  E-value=3.1e-13  Score=125.32  Aligned_cols=85  Identities=18%  Similarity=0.136  Sum_probs=77.0

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHh-CCchHHHHHHHhhhhhhhhhccCC-
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMAS-SNLFQLHSRLRNRSVEMLINKQDV-   82 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~-g~~~~~~~~~Ll~~~~~~i~~~d~-   82 (255)
                      .++.+|+ +|+||||.|++.|+.++++.|++.++++ +.+|..|+||||+|+.. ++  .+++++|+ +.|+++|.+|. 
T Consensus       193 d~n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~--~~iv~~Ll-~~gadvn~~~~~  267 (477)
T PHA02878        193 NVNIPDK-TNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKD--YDILKLLL-EHGVDVNAKSYI  267 (477)
T ss_pred             CCCCcCC-CCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCC--HHHHHHHH-HcCCCCCccCCC
Confidence            3567888 9999999999999999999999999998 88999999999999976 68  89999999 78999999986 


Q ss_pred             CCCchhHHHHHh
Q 042220           83 NGNTPLHVLAAV   94 (255)
Q Consensus        83 ~G~TpLh~A~~~   94 (255)
                      .|.||||+|...
T Consensus       268 ~g~TpLh~A~~~  279 (477)
T PHA02878        268 LGLTALHSSIKS  279 (477)
T ss_pred             CCCCHHHHHccC
Confidence            799999999544

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.42  E-value=3.5e-13  Score=132.58  Aligned_cols=133  Identities=17%  Similarity=0.095  Sum_probs=100.2

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      ++.++||.||..|+.++++.|++.+.++ +..|.+|+||||+|+.+|+  .++++.|+ +.|+++|.+|.+|+||||+|+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~--~~~v~~Ll-~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGY--EDCVLVLL-KHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCh--HHHHHHHH-hcCCCCCCcCCCCCCHHHHHH
Confidence            5679999999999999999999999998 8899999999999999999  99999999 789999999999999999999


Q ss_pred             Hhhhhc--c-chh-hhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccc
Q 042220           93 AVLQKE--K-TAV-EEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        93 ~~~~~~--~-~~~-~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      ..+|.+  + +.. ......+.+++.+..|+.-........+...|...+..+.++.+|+.
T Consensus       600 ~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh  660 (823)
T PLN03192        600 SAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ  660 (823)
T ss_pred             HhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            997765  0 000 00000112334455555554444444455567666656666666765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.41  E-value=4.1e-13  Score=124.26  Aligned_cols=139  Identities=17%  Similarity=0.112  Sum_probs=105.2

Q ss_pred             ceeecCCCCCcHHHHHHHcC--hHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            6 ACISDNDQKMTALLLAAGRG--HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      ++.+|. +|.||||+|+..|  +.++++.|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|++++.+|..
T Consensus       134 ~~~~~~-~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~--~~iv~~Ll-~~ga~~~~~~~~  208 (480)
T PHA03100        134 VNIKNS-DGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGN--IDVIKFLL-DNGADINAGDIE  208 (480)
T ss_pred             CCccCC-CCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCC--HHHHHHHH-HcCCCccCCCCC
Confidence            466788 9999999999999  999999999999998 7889999999999999999  99999999 789999999999


Q ss_pred             C------CchhHHHHHhhh--hc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccc
Q 042220           84 G------NTPLHVLAAVLQ--KE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        84 G------~TpLh~A~~~~~--~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      |      .||||.|+..++  .+      +...........++++++.|+.-.......-+-..|...+..+.++.+|+.
T Consensus       209 ~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~  288 (480)
T PHA03100        209 TLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLH  288 (480)
T ss_pred             CCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            9      899999999876  33      111111122234566666666554444445555567755555555556654

>PHA02946 ankyin-like protein; Provisional

Probab=99.40  E-value=7.8e-13  Score=121.60  Aligned_cols=139  Identities=16%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             cceeecCCCCCcHHHHHHHcC--hHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            5 AACISDNDQKMTALLLAAGRG--HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      .++.+|+ +|+||||+|+..+  +.++++.|+++++++....|.+|+|||| |+..++  .++++.|+ +.|++++.+|.
T Consensus        97 din~~d~-~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~--~~vv~~Ll-~~gad~~~~d~  171 (446)
T PHA02946         97 DPNACDK-QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPS--ERVFKKIM-SIGFEARIVDK  171 (446)
T ss_pred             CCCCCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCC--hHHHHHHH-hccccccccCC
Confidence            3577899 9999999998876  4799999999999984457899999998 666788  89999998 78999999999


Q ss_pred             CCCchhHHHHHhhhhc--------cchhhhHHHHhhccchHHHHHHHH--HHHHHhccCCCCCccCCCCCCCccccc
Q 042220           83 NGNTPLHVLAAVLQKE--------KTAVEEGEIKELKPRHTIVATLIA--TVTFAAGFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~~--------~~~~~~~~~~~~~~~~~vvA~Lia--tvtf~a~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      .|+||||+|+..++.+        +.....+.....++++++.|+.-.  .+....-+ .+|...+..+..+.+|+.
T Consensus       172 ~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lL-l~gadin~~d~~G~TpLh  247 (446)
T PHA02946        172 FGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLL-LPSTDVNKQNKFGDSPLT  247 (446)
T ss_pred             CCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHH-HcCCCCCCCCCCCCCHHH
Confidence            9999999988763321        111111122345677777776532  22222222 256666666666777875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.39  E-value=8.3e-13  Score=126.75  Aligned_cols=85  Identities=12%  Similarity=0.051  Sum_probs=74.8

Q ss_pred             ceee-cCCCCCcHHHHHHH--cChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            6 ACIS-DNDQKMTALLLAAG--RGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         6 v~~~-d~~~G~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      ++.+ |+ .|+||||.|+.  +++.+++++|+++++++ +.+|.+|+||||+|+..|+...++++.|+ +.|+++|.+|.
T Consensus       169 IN~~~d~-~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLL-e~GADVN~kD~  245 (764)
T PHA02716        169 LNYVCKK-TGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKII-ELGGDMDMKCV  245 (764)
T ss_pred             cccccCC-CCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHH-HcCCCCCCCCC
Confidence            5666 77 89999999865  46789999999999998 88999999999999999961148999999 78999999999


Q ss_pred             CCCchhHHHHH
Q 042220           83 NGNTPLHVLAA   93 (255)
Q Consensus        83 ~G~TpLh~A~~   93 (255)
                      +|+||||.|+.
T Consensus       246 ~G~TPLh~Ai~  256 (764)
T PHA02716        246 NGMSPIMTYII  256 (764)
T ss_pred             CCCCHHHHHHH
Confidence            99999999864

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.38  E-value=2.5e-13  Score=109.95  Aligned_cols=89  Identities=25%  Similarity=0.226  Sum_probs=83.4

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      +.+|..|+ .|.|||.+|+.+|+++++++|++.++++ ....+...++|.+|+..|.  .+++++|+ .++.++|..|.+
T Consensus       151 n~VN~~De-~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggy--tdiV~lLL-~r~vdVNvyDwN  225 (296)
T KOG0502|consen  151 NKVNACDE-FGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGY--TDIVELLL-TREVDVNVYDWN  225 (296)
T ss_pred             ccccCccc-cCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCCh--HHHHHHHH-hcCCCcceeccC
Confidence            56899999 9999999999999999999999999998 7788889999999999999  99999999 899999999999


Q ss_pred             CCchhHHHHHhhhh
Q 042220           84 GNTPLHVLAAVLQK   97 (255)
Q Consensus        84 G~TpLh~A~~~~~~   97 (255)
                      |-|||-+|++-+|.
T Consensus       226 GgTpLlyAvrgnhv  239 (296)
T KOG0502|consen  226 GGTPLLYAVRGNHV  239 (296)
T ss_pred             CCceeeeeecCChH
Confidence            99999999998554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.38  E-value=9.8e-13  Score=114.19  Aligned_cols=83  Identities=17%  Similarity=0.117  Sum_probs=76.3

Q ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHhCCCccccc-ccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchh
Q 042220           10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQV-DERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPL   88 (255)
Q Consensus        10 d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpL   88 (255)
                      |+ +|.||||+|++.|+.++++.|+++|+++ +.+ +..|+||||.|+..++  .+++++|+ +.|++++.+|.+|.|||
T Consensus        67 d~-~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~TpLh~Aa~~~~--~eivklLL-~~GAdin~kd~~G~TpL  141 (300)
T PHA02884         67 EN-SKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKITPLYISVLHGC--LKCLEILL-SYGADINIQTNDMVTPI  141 (300)
T ss_pred             CC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCCCCCCCCCHH
Confidence            56 8999999999999999999999999998 665 5679999999999999  99999999 78999999999999999


Q ss_pred             HHHHHhhhh
Q 042220           89 HVLAAVLQK   97 (255)
Q Consensus        89 h~A~~~~~~   97 (255)
                      |+|++.++.
T Consensus       142 ~~A~~~~~~  150 (300)
T PHA02884        142 ELALMICNN  150 (300)
T ss_pred             HHHHHhCCh
Confidence            999987543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.38  E-value=4.3e-13  Score=87.61  Aligned_cols=51  Identities=29%  Similarity=0.331  Sum_probs=33.3

Q ss_pred             CCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHH
Q 042220            3 KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFA   55 (255)
Q Consensus         3 ~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A   55 (255)
                      +..++.+|+ +|.||||+|+++|+.+++++|++.+.++ +.+|.+|+||||+|
T Consensus         6 ~~~~n~~d~-~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDK-YGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---T-TS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             cCCCcCcCC-CCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            566788999 9999999999999999999999989888 89999999999997

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.38  E-value=1.2e-12  Score=93.42  Aligned_cols=64  Identities=25%  Similarity=0.297  Sum_probs=58.3

Q ss_pred             CCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC
Q 042220           14 KMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD   81 (255)
Q Consensus        14 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d   81 (255)
                      |+||||+|+.+|+.+++++|+++++++ +.+|.+|+||||+|+.+|+  .+++++|+ +.|++++.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~~~~Ll-~~g~~~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGN--LEIVKLLL-EHGADVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTH--HHHHHHHH-HTTT-TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCcC
Confidence            689999999999999999999999998 8899999999999999999  99999999 7799999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02795 ankyrin-like protein; Provisional

Probab=99.37  E-value=1e-12  Score=118.72  Aligned_cols=80  Identities=20%  Similarity=0.055  Sum_probs=73.0

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      .|.+++|.|+.+++.|+++.|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|+++|.+|.+|.||||+|+
T Consensus       187 ~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~--~eiVelLL-~~GAdIN~~d~~G~TpLh~Aa  262 (437)
T PHA02795        187 IQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGY--IDLVSWLL-ENGANVNAVMSNGYTCLDVAV  262 (437)
T ss_pred             hccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCCcCCCCCCHHHHHH
Confidence            4678899999999999999999999998 8899999999999999999  99999999 789999999999999999999


Q ss_pred             Hhhh
Q 042220           93 AVLQ   96 (255)
Q Consensus        93 ~~~~   96 (255)
                      ..++
T Consensus       263 ~~g~  266 (437)
T PHA02795        263 DRGS  266 (437)
T ss_pred             HcCC
Confidence            8864

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.37  E-value=1.4e-12  Score=125.96  Aligned_cols=86  Identities=21%  Similarity=0.148  Sum_probs=46.6

Q ss_pred             ceeecCCCCCcHHHHHHHcC-hHHHHHHHHHhCCCcccccccCCchHHHHHHHhC-CchHHHHHHHhhhhhhhhhccCCC
Q 042220            6 ACISDNDQKMTALLLAAGRG-HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASS-NLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g-~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      ++.+|. +|+||||+|+..| +.+.++.|+..++++ +.+|..|+||||+|+..+ +  .++++.|+ +.|+++|.+|.+
T Consensus       300 in~~d~-~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~--~~iv~lLl-~~gadin~~d~~  374 (682)
T PHA02876        300 VNAKNI-KGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRN--KDIVITLL-ELGANVNARDYC  374 (682)
T ss_pred             CCCcCC-CCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCc--HHHHHHHH-HcCCCCccCCCC
Confidence            344555 5666666666655 355555555555555 455555555555555533 3  34444444 455555555555


Q ss_pred             CCchhHHHHHhhh
Q 042220           84 GNTPLHVLAAVLQ   96 (255)
Q Consensus        84 G~TpLh~A~~~~~   96 (255)
                      |+||||+|+..++
T Consensus       375 G~TpLh~Aa~~~~  387 (682)
T PHA02876        375 DKTPIHYAAVRNN  387 (682)
T ss_pred             CCCHHHHHHHcCC
Confidence            5555555555433

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.36  E-value=1.2e-12  Score=126.46  Aligned_cols=85  Identities=20%  Similarity=0.151  Sum_probs=76.5

Q ss_pred             ceeecCCCCCcHHHHHHHcChH-HHHHHHHHhCCCcccccccCCchHHHHHHHhC-CchHHHHHHHhhhhhhhhhccCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHI-RVVNEIISTCPDCCKQVDERGWNLLHFAMASS-NLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g-~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      ++.+|. .|+||||+|+..|+. ++++.|++.++++ +.+|.+|+||||+|+..| .  .+.++.|+ ..|++++.+|..
T Consensus       266 vn~~d~-~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~--~~~v~~Ll-~~gadin~~d~~  340 (682)
T PHA02876        266 VNSIDD-CKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYD--TENIRTLI-MLGADVNAADRL  340 (682)
T ss_pred             CCCCCC-CCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCC--HHHHHHHH-HcCCCCCCcccC
Confidence            566778 899999999999986 6889999999998 889999999999999998 6  78888888 789999999999


Q ss_pred             CCchhHHHHHhh
Q 042220           84 GNTPLHVLAAVL   95 (255)
Q Consensus        84 G~TpLh~A~~~~   95 (255)
                      |.||||+|+..+
T Consensus       341 g~TpLh~A~~~~  352 (682)
T PHA02876        341 YITPLHQASTLD  352 (682)
T ss_pred             CCcHHHHHHHhC
Confidence            999999999864

>PHA02798 ankyrin-like protein; Provisional

Probab=99.35  E-value=1.4e-12  Score=121.31  Aligned_cols=87  Identities=17%  Similarity=0.060  Sum_probs=77.0

Q ss_pred             cceeecCCCCCcHHHHHHHc-----ChHHHHHHHHHhCCCcccccccCCchHHHHHHHhC---CchHHHHHHHhhhhhhh
Q 042220            5 AACISDNDQKMTALLLAAGR-----GHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASS---NLFQLHSRLRNRSVEML   76 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g---~~~~~~~~~Ll~~~~~~   76 (255)
                      -++.+|+ +|.||||.|+.+     ++.++++.|+++|+++ +.+|..|+||||+|+..+   +  .+++++|+ +.|++
T Consensus        63 dvn~~d~-~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~--~~iv~~Ll-~~Gad  137 (489)
T PHA02798         63 NVNGLDN-EYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINN--LEILLFMI-ENGAD  137 (489)
T ss_pred             CCCCCCC-CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcCh--HHHHHHHH-HcCCC
Confidence            3567788 999999998864     6789999999999998 889999999999999876   5  78999998 78999


Q ss_pred             hhccCCCCCchhHHHHHhhh
Q 042220           77 INKQDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        77 i~~~d~~G~TpLh~A~~~~~   96 (255)
                      ++.+|.+|.||||+|++.++
T Consensus       138 vn~~d~~g~tpL~~a~~~~~  157 (489)
T PHA02798        138 TTLLDKDGFTMLQVYLQSNH  157 (489)
T ss_pred             ccccCCCCCcHHHHHHHcCC
Confidence            99999999999999998765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.35  E-value=9.3e-13  Score=113.55  Aligned_cols=90  Identities=22%  Similarity=0.278  Sum_probs=83.8

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      +|.|-+..|.|+|+.|+.+|+.++++.|+..++|+ |.+|.+|.|+|++|+++||  .+++++|+...++++...|.+|.
T Consensus       332 VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGh--kEivklLLA~p~cd~sLtD~DgS  408 (452)
T KOG0514|consen  332 VNAKASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGH--KEIVKLLLAVPSCDISLTDVDGS  408 (452)
T ss_pred             cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhCh--HHHHHHHhccCcccceeecCCCc
Confidence            45555547999999999999999999999999999 8999999999999999999  99999999788899999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      |+|.+|-..||.+
T Consensus       409 TAl~IAleagh~e  421 (452)
T KOG0514|consen  409 TALSIALEAGHRE  421 (452)
T ss_pred             hhhhhHHhcCchH
Confidence            9999999998876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.30  E-value=4.8e-12  Score=117.89  Aligned_cols=49  Identities=18%  Similarity=0.102  Sum_probs=30.0

Q ss_pred             ccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhh
Q 042220           45 DERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        45 d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~   96 (255)
                      |..|+||||+|+..++  .+++++|+ +.|+++|.+|.+|+||||+|++.++
T Consensus       253 d~~G~TpL~~Aa~~~~--~~~v~~LL-~~Gadin~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        253 DKKGFNPLLISAKVDN--YEAFNYLL-KLGDDIYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             CCCCCCHHHHHHHhcC--HHHHHHHH-HcCCCccccCCCCCCHHHHHHHcCC
Confidence            4446666666666666  66666666 5566666666666666666666544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.29  E-value=1.3e-11  Score=91.95  Aligned_cols=84  Identities=31%  Similarity=0.387  Sum_probs=76.2

Q ss_pred             eecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCch
Q 042220            8 ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTP   87 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~Tp   87 (255)
                      .+|. +|+||||+|++.|+.++++.|++.+++. ..+|..|.+|+|.|+..++  .++++.++ +.+..++..|..|.||
T Consensus         2 ~~~~-~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~--~~~~~~ll-~~~~~~~~~~~~~~~~   76 (126)
T cd00204           2 ARDE-DGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGH--LEIVKLLL-EKGADVNARDKDGNTP   76 (126)
T ss_pred             CcCc-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCC--HHHHHHHH-HcCCCccccCCCCCCH
Confidence            4566 8999999999999999999999999887 7789999999999999999  99999998 6777889999999999


Q ss_pred             hHHHHHhhh
Q 042220           88 LHVLAAVLQ   96 (255)
Q Consensus        88 Lh~A~~~~~   96 (255)
                      +|+|++.++
T Consensus        77 l~~a~~~~~   85 (126)
T cd00204          77 LHLAARNGN   85 (126)
T ss_pred             HHHHHHcCc
Confidence            999999844

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.28  E-value=1.2e-11  Score=115.27  Aligned_cols=85  Identities=14%  Similarity=0.198  Sum_probs=66.7

Q ss_pred             ceeecCCCCCcHHHHHHHc---ChHHHHHHHHHhCCCcccccccCCchHHHHHHHh--CCchHHHHHHHhhhhhhhhhc-
Q 042220            6 ACISDNDQKMTALLLAAGR---GHIRVVNEIISTCPDCCKQVDERGWNLLHFAMAS--SNLFQLHSRLRNRSVEMLINK-   79 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~--g~~~~~~~~~Ll~~~~~~i~~-   79 (255)
                      ++.+|+ +|+||||.|+..   |+.++++.|+++|+++.+.+|..|+||||+|+..  ++  .++++.|+ +.|++++. 
T Consensus       101 in~~d~-~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~--~~iv~~Ll-~~Gadi~~~  176 (494)
T PHA02989        101 INLKTF-NGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVK--KDVIKILL-SFGVNLFEK  176 (494)
T ss_pred             CCCCCC-CCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCC--HHHHHHHH-HcCCCcccc
Confidence            567777 888888877654   6788888888888887456788888888888764  46  78888888 77888887 


Q ss_pred             cCCCCCchhHHHHHh
Q 042220           80 QDVNGNTPLHVLAAV   94 (255)
Q Consensus        80 ~d~~G~TpLh~A~~~   94 (255)
                      +|..|.||||+|.+.
T Consensus       177 ~~~~g~tpL~~a~~~  191 (494)
T PHA02989        177 TSLYGLTPMNIYLRN  191 (494)
T ss_pred             ccccCCChHHHHHhc
Confidence            577888888888765

>PHA02798 ankyrin-like protein; Provisional

Probab=99.28  E-value=1.4e-11  Score=114.65  Aligned_cols=87  Identities=16%  Similarity=0.187  Sum_probs=76.5

Q ss_pred             cceeecCCCCCcHHHHHHHcC---hHHHHHHHHHhCCCcccccccCCchHHHHHHHhCC-chHHHHHHHhhhhhhhhhcc
Q 042220            5 AACISDNDQKMTALLLAAGRG---HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSN-LFQLHSRLRNRSVEMLINKQ   80 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~-~~~~~~~~Ll~~~~~~i~~~   80 (255)
                      -+|.+|+ +|+||||+|+.+|   +.++++.|+++|+++ +.+|.+|+||||+|++.++ ...+++++|+ +.|++++.+
T Consensus       101 diN~~d~-~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll-~~gadin~~  177 (489)
T PHA02798        101 DINKKNS-DGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLL-EKGVDINTH  177 (489)
T ss_pred             CCCCCCC-CcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHH-HhCCCcccc
Confidence            3678899 9999999999975   789999999999998 8899999999999999875 3378999998 789999988


Q ss_pred             C-CCCCchhHHHHHh
Q 042220           81 D-VNGNTPLHVLAAV   94 (255)
Q Consensus        81 d-~~G~TpLh~A~~~   94 (255)
                      | ..|.||||.+.+.
T Consensus       178 ~~~~~~t~Lh~~~~~  192 (489)
T PHA02798        178 NNKEKYDTLHCYFKY  192 (489)
T ss_pred             cCcCCCcHHHHHHHh
Confidence            5 5789999998764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.26  E-value=1.1e-11  Score=117.22  Aligned_cols=81  Identities=14%  Similarity=-0.001  Sum_probs=73.1

Q ss_pred             eecCCCCCcHHHHHHHcC---hHHHHHHHHHhCCCcccccccCCchHHHHHHHhC--CchHHHHHHHhhhhh--hhhhcc
Q 042220            8 ISDNDQKMTALLLAAGRG---HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASS--NLFQLHSRLRNRSVE--MLINKQ   80 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~~~~~~~Ll~~~~--~~i~~~   80 (255)
                      .+|+ +|+||||+|+.+|   +.|++++|+++|+++ +.+|..|+||||+|+..+  +  .+++++|+ +.|  ++.+..
T Consensus        36 ~kd~-~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~--~eIv~~Ll-~~~~~~~~~~~  110 (672)
T PHA02730         36 HIDR-RGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVK--SQIVHLLI-SSYSNASNELT  110 (672)
T ss_pred             hcCC-CCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCc--HHHHHHHH-hcCCCCCcccc
Confidence            7888 9999999999997   599999999999999 889999999999999977  7  89999999 664  556888


Q ss_pred             CCCCCchhHHHHH
Q 042220           81 DVNGNTPLHVLAA   93 (255)
Q Consensus        81 d~~G~TpLh~A~~   93 (255)
                      |+.+++|||.++.
T Consensus       111 ~~~~d~~l~~y~~  123 (672)
T PHA02730        111 SNINDFDLYSYMS  123 (672)
T ss_pred             cccCCchHHHHHH
Confidence            9889999999888

>PHA02917 ankyrin-like protein; Provisional

Probab=99.24  E-value=1.3e-11  Score=118.32  Aligned_cols=88  Identities=11%  Similarity=-0.002  Sum_probs=74.3

Q ss_pred             cceeecCCCCCcHHHHHH--HcChHHHHHHHHHhCCCcccccc---cCC-----------chHHHHHHH-----------
Q 042220            5 AACISDNDQKMTALLLAA--GRGHIRVVNEIISTCPDCCKQVD---ERG-----------WNLLHFAMA-----------   57 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d---~~G-----------~t~Lh~A~~-----------   57 (255)
                      -++.+|+ +|+||||.++  ..|+.|++++|+++|+++ +.+|   ..|           +||||+|+.           
T Consensus       128 din~~d~-~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  205 (661)
T PHA02917        128 DLSVKCE-NHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRA  205 (661)
T ss_pred             CCCccCC-CCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccccccccc
Confidence            4567888 9999999653  578999999999999988 4443   234           599999986           


Q ss_pred             hCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhhh
Q 042220           58 SSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        58 ~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~   97 (255)
                      +++  .+++++|+ +.|+++|.+|.+|+||||+|++.++.
T Consensus       206 ~~~--~eiv~~Li-~~Gadvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        206 YVR--PEVVKCLI-NHGIKPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             cCc--HHHHHHHH-HCCCCcccCCCCCCcHHHHHHHcCCC
Confidence            457  89999999 88999999999999999999998764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.24  E-value=8e-12  Score=105.03  Aligned_cols=84  Identities=26%  Similarity=0.268  Sum_probs=76.3

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      -+|..+. ...||||.|+..||.++++.|+++.+|+ +..++.|+|||||||..|.  ..+.+-|+ .+|+.++..|++|
T Consensus        59 rvn~tnm-gddtplhlaaahghrdivqkll~~kadv-navnehgntplhyacfwgy--dqiaedli-~~ga~v~icnk~g  133 (448)
T KOG0195|consen   59 RVNSTNM-GDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHYACFWGY--DQIAEDLI-SCGAAVNICNKKG  133 (448)
T ss_pred             ccccccC-CCCcchhhhhhcccHHHHHHHHHHhccc-chhhccCCCchhhhhhhcH--HHHHHHHH-hccceeeecccCC
Confidence            3556666 5679999999999999999999999999 8999999999999999999  88999888 8999999999999


Q ss_pred             CchhHHHHH
Q 042220           85 NTPLHVLAA   93 (255)
Q Consensus        85 ~TpLh~A~~   93 (255)
                      .|||..|..
T Consensus       134 ~tpldkakp  142 (448)
T KOG0195|consen  134 MTPLDKAKP  142 (448)
T ss_pred             CCchhhhch
Confidence            999998753

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.21  E-value=2.6e-11  Score=85.42  Aligned_cols=74  Identities=18%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHV   90 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~   90 (255)
                      .|++|||+||-.|+.+++++|+..++++ +.+|+.|-|||..|+..||  .+++++|+ +.|++...+..+|.+.+.-
T Consensus        33 ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH--~~cVklLL-~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGH--RDCVKLLL-QNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhh--HHHHHHHH-HcCcccceeCCCchhHHhh
Confidence            5788888888888888888888888887 7778888888888888888  88888887 6777777777777766544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.21  E-value=2.9e-11  Score=99.21  Aligned_cols=88  Identities=25%  Similarity=0.177  Sum_probs=79.2

Q ss_pred             ceeecCCCCCcHHHHHHHcCh-----HHHHHHHHHhCC--CcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhh
Q 042220            6 ACISDNDQKMTALLLAAGRGH-----IRVVNEIISTCP--DCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLIN   78 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~-----~~~v~~Ll~~~~--~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~   78 (255)
                      ++.+|. +|.||||+|+..|+     .++++.|++.++  +....+|.+|+||||+|+..|+  .++++.++ +.+.+++
T Consensus        99 ~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~--~~~~~~ll-~~~~~~~  174 (235)
T COG0666          99 VNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGD--ADIVELLL-EAGADPN  174 (235)
T ss_pred             cccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCc--hHHHHHHH-hcCCCCc
Confidence            378888 99999999999999     999999999999  5657789999999999999999  89999998 7899999


Q ss_pred             ccCCCCCchhHHHHHhhhh
Q 042220           79 KQDVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        79 ~~d~~G~TpLh~A~~~~~~   97 (255)
                      .+|..|.|++++|+..++.
T Consensus       175 ~~~~~g~t~l~~a~~~~~~  193 (235)
T COG0666         175 SRNSYGVTALDPAAKNGRI  193 (235)
T ss_pred             ccccCCCcchhhhcccchH
Confidence            9999999999999988554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.21  E-value=8.1e-12  Score=111.02  Aligned_cols=87  Identities=22%  Similarity=0.257  Sum_probs=78.0

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      .+..|+ .|+|.||+||.+||.+++++|++.++|+ +.++.+|+|+||.+++.|+  .++++.|+ +.|+.++ +|.+|.
T Consensus       143 ~~Ianr-hGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~--vdivq~Ll-~~ga~i~-~d~~Gm  216 (615)
T KOG0508|consen  143 PEIANR-HGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGS--VDIVQLLL-KHGAKID-VDGHGM  216 (615)
T ss_pred             Cccccc-CCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhccc--HHHHHHHH-hCCceee-ecCCCC
Confidence            356688 9999999999999999999999999999 8899999999999999999  99999999 6666554 467799


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      |||..|+..|+.+
T Consensus       217 tPL~~Aa~tG~~~  229 (615)
T KOG0508|consen  217 TPLLLAAVTGHTD  229 (615)
T ss_pred             chHHHHhhhcchH
Confidence            9999999987754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.21  E-value=3.2e-11  Score=115.62  Aligned_cols=83  Identities=19%  Similarity=0.129  Sum_probs=74.0

Q ss_pred             ceeecCCCCCcHHHHHHHcC-----------------------hHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCch
Q 042220            6 ACISDNDQKMTALLLAAGRG-----------------------HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLF   62 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g-----------------------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~   62 (255)
                      ++.+|+ +|+||||.|++.+                       +.++++.|+++++++ +.+|..|+||||+|+..++  
T Consensus       389 ~~~~~~-~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdI-N~kd~~G~TpLh~Aa~~~~--  464 (661)
T PHA02917        389 AVNHLD-DGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDI-NMIDKRGETLLHKAVRYNK--  464 (661)
T ss_pred             ccccCC-CCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCC-CCCCCCCcCHHHHHHHcCC--
Confidence            345567 7999999987533                       356789999999998 8899999999999999999  


Q ss_pred             HHHHHHHhhhhhhhhhccCCCCCchhHHHHH
Q 042220           63 QLHSRLRNRSVEMLINKQDVNGNTPLHVLAA   93 (255)
Q Consensus        63 ~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~   93 (255)
                      .+++++|+ +.|++++.+|..|+||||+|+.
T Consensus       465 ~~~v~~Ll-~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        465 QSLVSLLL-ESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             HHHHHHHH-HCcCCCCCCCCCCCCHHHHHHH
Confidence            99999999 8999999999999999999996

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.20  E-value=2.7e-11  Score=94.92  Aligned_cols=79  Identities=22%  Similarity=0.143  Sum_probs=73.0

Q ss_pred             HHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhh
Q 042220           17 ALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        17 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~   96 (255)
                      -+.+|+..+..+.|+.|++..++..+.+|++|.||||-|+.+|+  .++++.|+ ..|++.+.+..+|+||||-|++..+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h--~div~~ll-~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGH--LDIVHELL-LSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCc--hHHHHHHH-HccCCcccccccCccchhhhhcccc
Confidence            36789999999999999999999989999999999999999999  99999998 7899999999999999999998744


Q ss_pred             hc
Q 042220           97 KE   98 (255)
Q Consensus        97 ~~   98 (255)
                      .+
T Consensus       143 ~~  144 (228)
T KOG0512|consen  143 FE  144 (228)
T ss_pred             hh
Confidence            43

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.18  E-value=3.1e-11  Score=117.75  Aligned_cols=79  Identities=25%  Similarity=0.172  Sum_probs=72.0

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccc--------------cCCchHHHHHHHhCCchHHHHHHHhhhhhhhhh
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVD--------------ERGWNLLHFAMASSNLFQLHSRLRNRSVEMLIN   78 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~   78 (255)
                      .|.||||+|+.+|+.++++.|+++++++ +.++              ..|+||||.|+..++  .+++++|+ +.|+++|
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~--~~iv~lLl-~~gadin  202 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGS--PSIVALLS-EDPADIL  202 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCC--HHHHHHHh-cCCcchh
Confidence            6999999999999999999999999987 4332              369999999999999  99999998 7899999


Q ss_pred             ccCCCCCchhHHHHHhh
Q 042220           79 KQDVNGNTPLHVLAAVL   95 (255)
Q Consensus        79 ~~d~~G~TpLh~A~~~~   95 (255)
                      .+|..|+||||+|+..+
T Consensus       203 ~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       203 TADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hHhhhhhHHHHHHHhhh
Confidence            99999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.14  E-value=6.7e-11  Score=107.05  Aligned_cols=82  Identities=15%  Similarity=-0.038  Sum_probs=51.7

Q ss_pred             CCcHHHHHHHcChHHHHHHHHHhCCCccccc-----ccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchh
Q 042220           14 KMTALLLAAGRGHIRVVNEIISTCPDCCKQV-----DERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPL   88 (255)
Q Consensus        14 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpL   88 (255)
                      +.||+|.|+.+|+.+++++|++++++..+..     +..|.+++|.|...++  .+++++|+ +.|+++|.+|.+|+|||
T Consensus       149 ~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~--~eIve~LI-s~GADIN~kD~~G~TpL  225 (437)
T PHA02795        149 CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTV--LEIYKLCI-PYIEDINQLDAGGRTLL  225 (437)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCH--HHHHHHHH-hCcCCcCcCCCCCCCHH
Confidence            3445555555555555555555543221211     1224555566666566  67777777 67889999999999999


Q ss_pred             HHHHHhhhhc
Q 042220           89 HVLAAVLQKE   98 (255)
Q Consensus        89 h~A~~~~~~~   98 (255)
                      |+|+..++.+
T Consensus       226 h~Aa~~g~~e  235 (437)
T PHA02795        226 YRAIYAGYID  235 (437)
T ss_pred             HHHHHcCCHH
Confidence            9999887765

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.14  E-value=1.8e-10  Score=85.70  Aligned_cols=85  Identities=31%  Similarity=0.365  Sum_probs=77.4

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +.+|. .|.+|+|.|+..++.++++.|++.+++. +..+..|.||+|+|+..++  .+++++|+ +.+.+.+..|..|.|
T Consensus        34 ~~~~~-~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~~~--~~~~~~L~-~~~~~~~~~~~~~~~  108 (126)
T cd00204          34 NAKDN-DGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARNGN--LDVVKLLL-KHGADVNARDKDGRT  108 (126)
T ss_pred             CccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCc--HHHHHHHH-HcCCCCcccCCCCCC
Confidence            56777 8999999999999999999999999876 7788999999999999999  99999998 677889999999999


Q ss_pred             hhHHHHHhhh
Q 042220           87 PLHVLAAVLQ   96 (255)
Q Consensus        87 pLh~A~~~~~   96 (255)
                      |++.|....+
T Consensus       109 ~l~~~~~~~~  118 (126)
T cd00204         109 PLHLAAKNGH  118 (126)
T ss_pred             HHHHHHhcCC
Confidence            9999988743

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.14  E-value=8.5e-11  Score=113.04  Aligned_cols=78  Identities=22%  Similarity=0.150  Sum_probs=72.6

Q ss_pred             HHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhh
Q 042220           17 ALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        17 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~   96 (255)
                      .|+.|+..|+.+.++.|++.++++ +.+|.+|+||||+|+.+|+  .+++++|+ +.|+++|.+|.+|+||||+|+..++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~--~eiv~~LL-~~Gadvn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGH--VQVVRVLL-EFGADPTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCC--HHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCc
Confidence            588999999999999999999998 8899999999999999999  99999999 7899999999999999999999865


Q ss_pred             hc
Q 042220           97 KE   98 (255)
Q Consensus        97 ~~   98 (255)
                      .+
T Consensus       161 ~~  162 (664)
T PTZ00322        161 RE  162 (664)
T ss_pred             HH
Confidence            44

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.12  E-value=7.1e-11  Score=76.38  Aligned_cols=47  Identities=36%  Similarity=0.319  Sum_probs=38.4

Q ss_pred             CchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhhh
Q 042220           48 GWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        48 G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~   97 (255)
                      |+||||+|++.|+  .+++++++ +.+.++|.+|.+|+||||+|++.++.
T Consensus         1 g~t~lh~A~~~g~--~~~~~~Ll-~~~~din~~d~~g~t~lh~A~~~g~~   47 (54)
T PF13637_consen    1 GRTPLHWAARSGN--LEIVKLLL-EHGADINAQDEDGRTPLHYAAKNGNI   47 (54)
T ss_dssp             SSBHHHHHHHTT---HHHHHHHH-HTTSGTT-B-TTS--HHHHHHHTT-H
T ss_pred             CChHHHHHHHhCC--HHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHccCH
Confidence            7899999999999  99999999 66999999999999999999998664

...

>PHA02792 ankyrin-like protein; Provisional

Probab=99.07  E-value=2.5e-10  Score=107.20  Aligned_cols=83  Identities=13%  Similarity=0.134  Sum_probs=65.8

Q ss_pred             ceeecCCC--CCcHHHHHHHcChH---HHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhcc
Q 042220            6 ACISDNDQ--KMTALLLAAGRGHI---RVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQ   80 (255)
Q Consensus         6 v~~~d~~~--G~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~   80 (255)
                      ++.+|+ +  |.||||.|+..+..   ++++.++++++++ +.+|..|+||||+|+..++  .+++++|+ +.|++++.+
T Consensus       365 IN~kD~-~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI-N~kD~~G~TPLh~Aa~~~n--~eivelLL-s~GADIN~k  439 (631)
T PHA02792        365 VVEDDD-NIINIMPLFPTLSIHESDVLSILKLCKPYIDDI-NKIDKHGRSILYYCIESHS--VSLVEWLI-DNGADINIT  439 (631)
T ss_pred             hhhhcC-CCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc-ccccccCcchHHHHHHcCC--HHHHHHHH-HCCCCCCCc
Confidence            355665 5  45888887766554   4577788888887 7788888999999988888  88888888 678888888


Q ss_pred             CCCCCchhHHHHH
Q 042220           81 DVNGNTPLHVLAA   93 (255)
Q Consensus        81 d~~G~TpLh~A~~   93 (255)
                      |..|+||||+|..
T Consensus       440 D~~G~TpL~~A~~  452 (631)
T PHA02792        440 TKYGSTCIGICVI  452 (631)
T ss_pred             CCCCCCHHHHHHH
Confidence            8889999988876

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.07  E-value=1.5e-10  Score=114.11  Aligned_cols=81  Identities=25%  Similarity=0.289  Sum_probs=61.9

Q ss_pred             CCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHH
Q 042220           14 KMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAA   93 (255)
Q Consensus        14 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~   93 (255)
                      |-+++|.|...++..+.+.+++++.++ +.++.+|.||||.|+.+|+  .+++++|+ +.|++++.+|+.|.||||.|+.
T Consensus       507 ~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh~A~~~g~--v~~VkfLL-e~gAdv~ak~~~G~TPLH~Aa~  582 (1143)
T KOG4177|consen  507 GLTPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPLHVAVHYGN--VDLVKFLL-EHGADVNAKDKLGYTPLHQAAQ  582 (1143)
T ss_pred             ccchhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchHHHHHhcCC--chHHHHhh-hCCccccccCCCCCChhhHHHH
Confidence            333444444444444444444444444 5678889999999999999  99999999 8999999999999999999999


Q ss_pred             hhhhc
Q 042220           94 VLQKE   98 (255)
Q Consensus        94 ~~~~~   98 (255)
                      .+|.+
T Consensus       583 ~G~~~  587 (1143)
T KOG4177|consen  583 QGHND  587 (1143)
T ss_pred             cChHH
Confidence            98765

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.06  E-value=3.4e-10  Score=95.17  Aligned_cols=90  Identities=23%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      -+|.+|. .|+++|..|+.+|+.+.++.|++.++|++..++..+.||||.|+..|+  .++.+.++ +.|+.....|.-|
T Consensus        37 ~vn~~D~-sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn--~dvcrlll-daGa~~~~vNsvg  112 (396)
T KOG1710|consen   37 QVNQRDP-SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN--QDVCRLLL-DAGARMYLVNSVG  112 (396)
T ss_pred             hhhccCC-CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC--chHHHHHH-hccCccccccchh
Confidence            4788999 999999999999999999999999999977888899999999999999  99999998 8899999999999


Q ss_pred             CchhHHHHHhhhhc
Q 042220           85 NTPLHVLAAVLQKE   98 (255)
Q Consensus        85 ~TpLh~A~~~~~~~   98 (255)
                      .|+-.+|+--||.+
T Consensus       113 rTAaqmAAFVG~H~  126 (396)
T KOG1710|consen  113 RTAAQMAAFVGHHE  126 (396)
T ss_pred             hhHHHHHHHhcchH
Confidence            99999999887765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.06  E-value=1.8e-10  Score=103.90  Aligned_cols=139  Identities=15%  Similarity=0.074  Sum_probs=112.4

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +..+. +|.|+||.+|.-.+.+++++|+++++++ +..|..||||||.|+..|+  ..++++++ ..|+++...|.+|+.
T Consensus        67 ~~~n~-DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~--~~i~~~li-~~gA~~~avNsdg~~  141 (527)
T KOG0505|consen   67 NLCNV-DGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGY--LNIVEYLI-QHGANLLAVNSDGNM  141 (527)
T ss_pred             cccCC-ccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhccccc--HHHHHHHH-HhhhhhhhccCCCCC
Confidence            66677 9999999999999999999999999999 8999999999999999999  99999999 899999999999999


Q ss_pred             hhHHHHHhhhhc-----------c--------------------chhh-hHHHHhhccchHHHHHHHHHHHHHhccCCCC
Q 042220           87 PLHVLAAVLQKE-----------K--------------------TAVE-EGEIKELKPRHTIVATLIATVTFAAGFTLPG  134 (255)
Q Consensus        87 pLh~A~~~~~~~-----------~--------------------~~~~-~~~~~~~~~~~~vvA~Liatvtf~a~l~~PG  134 (255)
                      |+.++....-.+           +                    ++|. .++....+.+.++||.--+....++-+..-|
T Consensus       142 P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag  221 (527)
T KOG0505|consen  142 PYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAG  221 (527)
T ss_pred             ccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhc
Confidence            998875430000           0                    0111 0222223577888888888778888888888


Q ss_pred             CccCCCCCCCcccccc
Q 042220          135 GYWGKEGPIPGTSILI  150 (255)
Q Consensus       135 g~~~~~~~~~g~~~~~  150 (255)
                      +..+.++.++.+|+..
T Consensus       222 ~~~~~~D~dgWtPlHA  237 (527)
T KOG0505|consen  222 YSVNIKDYDGWTPLHA  237 (527)
T ss_pred             cCcccccccCCCcccH
Confidence            8877778888999874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.04  E-value=4.4e-10  Score=106.50  Aligned_cols=84  Identities=15%  Similarity=0.052  Sum_probs=73.0

Q ss_pred             ceeecCCCCCcHHHH---HHHcC---------hHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhh
Q 042220            6 ACISDNDQKMTALLL---AAGRG---------HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSV   73 (255)
Q Consensus         6 v~~~d~~~G~tpLh~---Aa~~g---------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~   73 (255)
                      ++.+|. +|+||||.   |...+         ..++++.|+++++++ +.+|..|+||||+|+..++  .+++++|+ +.
T Consensus       410 IN~kd~-~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADI-NakD~~G~TPLh~Aa~~~~--~eive~LI-~~  484 (672)
T PHA02730        410 INHVSN-NGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDI-DMIDNENKTLLYYAVDVNN--IQFARRLL-EY  484 (672)
T ss_pred             cccccc-CCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccch-hccCCCCCCHHHHHHHhCC--HHHHHHHH-HC
Confidence            678888 99999994   33332         235799999999998 8999999999999999999  99999999 88


Q ss_pred             hhhhhccCC-CCCchhHHHHHh
Q 042220           74 EMLINKQDV-NGNTPLHVLAAV   94 (255)
Q Consensus        74 ~~~i~~~d~-~G~TpLh~A~~~   94 (255)
                      |+++|.+|. .|+||||+|+..
T Consensus       485 GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        485 GASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             CCCCCCCCCcCCcCHHHHHHHh
Confidence            999999997 599999999874

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.04  E-value=1.4e-10  Score=108.27  Aligned_cols=91  Identities=20%  Similarity=0.184  Sum_probs=83.5

Q ss_pred             CCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            3 KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         3 ~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      +...|.+|- +|.|+||.|+.+|+.++++.|+++.+-. +..|.+|.+|||+|+++|+  .+.+++++ ..+..+|..+.
T Consensus        39 sds~n~qd~-~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaaw~g~--~e~vkmll-~q~d~~na~~~  113 (854)
T KOG0507|consen   39 SDSHNLQDY-SGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAAWNGN--LEIVKMLL-LQTDILNAVNI  113 (854)
T ss_pred             CccccccCc-cchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehhhcCc--chHHHHHH-hcccCCCcccc
Confidence            455678888 9999999999999999999999998877 7889999999999999999  99999998 66788999999


Q ss_pred             CCCchhHHHHHhhhhc
Q 042220           83 NGNTPLHVLAAVLQKE   98 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~~   98 (255)
                      +|.||||.|++++|.+
T Consensus       114 e~~tplhlaaqhgh~d  129 (854)
T KOG0507|consen  114 ENETPLHLAAQHGHLE  129 (854)
T ss_pred             cCcCccchhhhhcchH
Confidence            9999999999998876

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.03  E-value=1.6e-08  Score=95.42  Aligned_cols=83  Identities=20%  Similarity=0.155  Sum_probs=75.8

Q ss_pred             CCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhh--hhccCCCCCchhH
Q 042220           12 DQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEML--INKQDVNGNTPLH   89 (255)
Q Consensus        12 ~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~--i~~~d~~G~TpLh   89 (255)
                      +.|+.||..||.-++.|++++|+++++|+ +.+|.+|+|.||.-+.+-.  .++.+.++ +.|++  ...+|++|-|||.
T Consensus       238 YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~--~~My~~~L-~~ga~~l~~v~N~qgLTPLt  313 (782)
T KOG3676|consen  238 YFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFV--TEMYDLAL-ELGANALEHVRNNQGLTPLT  313 (782)
T ss_pred             eeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHH--HHHHHHHH-hcCCCccccccccCCCChHH
Confidence            36899999999999999999999999999 8999999999999999988  89999988 77887  8899999999999


Q ss_pred             HHHHhhhhc
Q 042220           90 VLAAVLQKE   98 (255)
Q Consensus        90 ~A~~~~~~~   98 (255)
                      +|++.|..+
T Consensus       314 LAaklGk~e  322 (782)
T KOG3676|consen  314 LAAKLGKKE  322 (782)
T ss_pred             HHHHhhhHH
Confidence            999985543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.02  E-value=4.6e-10  Score=107.99  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=76.1

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhh-------hhhh
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSV-------EMLI   77 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~-------~~~i   77 (255)
                      .++.+|+ +|+||||+|+.+|+.++++.|++.++++ +.+|.+|+||||+|+..++  .+++++|+ +.       +++.
T Consensus       107 din~~d~-~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~--~~iv~~Ll-~~~~~~~~~ga~~  181 (664)
T PTZ00322        107 DPNCRDY-DGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGF--REVVQLLS-RHSQCHFELGANA  181 (664)
T ss_pred             CCCCcCC-CCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc--HHHHHHHH-hCCCcccccCCCC
Confidence            3577888 9999999999999999999999999998 8899999999999999999  99999998 45       7888


Q ss_pred             hccCCCCCchhHHHHHh
Q 042220           78 NKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        78 ~~~d~~G~TpLh~A~~~   94 (255)
                      +.++..|++|+..+...
T Consensus       182 ~~~~~~g~~~~~~~~~~  198 (664)
T PTZ00322        182 KPDSFTGKPPSLEDSPI  198 (664)
T ss_pred             CccccCCCCccchhhhh
Confidence            88888899888776543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.02  E-value=4.7e-10  Score=79.12  Aligned_cols=78  Identities=18%  Similarity=0.156  Sum_probs=69.3

Q ss_pred             cHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhh
Q 042220           16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVL   95 (255)
Q Consensus        16 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~   95 (255)
                      --+.++.++|..+-++..+..+-++.+.  ..||+|||+|+-+|+  .+++++++ ..|++++.+|+.|-|||--|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQ--l~ilefli-~iGA~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQ--LSILEFLI-SIGANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcch--HHHHHHHH-HhccccCCccccCCcHHHHHHHHh
Confidence            3567899999999999999888666332  389999999999999  99999999 899999999999999999999998


Q ss_pred             hhc
Q 042220           96 QKE   98 (255)
Q Consensus        96 ~~~   98 (255)
                      |.+
T Consensus        79 H~~   81 (117)
T KOG4214|consen   79 HRD   81 (117)
T ss_pred             hHH
Confidence            875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.02  E-value=2.6e-10  Score=107.04  Aligned_cols=87  Identities=13%  Similarity=0.013  Sum_probs=76.4

Q ss_pred             cceeecCCCCCcHHHHHHH-cChHHHHHHHHHhCCCcc-----------------------------------cccccCC
Q 042220            5 AACISDNDQKMTALLLAAG-RGHIRVVNEIISTCPDCC-----------------------------------KQVDERG   48 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~-~g~~~~v~~Ll~~~~~~~-----------------------------------~~~d~~G   48 (255)
                      -+|.+|+ .|.+|+|+|+. +|+.|++++|+++|++..                                   +.+|+.|
T Consensus        97 dvN~~~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  175 (631)
T PHA02792         97 EINSIKN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMG  175 (631)
T ss_pred             CcccccC-CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCC
Confidence            4567888 89999999966 699999999999997621                                   2356779


Q ss_pred             chHHHHHHHhC-------CchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhh
Q 042220           49 WNLLHFAMASS-------NLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVL   95 (255)
Q Consensus        49 ~t~Lh~A~~~g-------~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~   95 (255)
                      +||||+|+.++       +  .+++++|+ +.|++++.+|.+|.||||+|+.+.
T Consensus       176 ~t~L~~~i~~~s~~~~~~~--~~v~k~Li-~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        176 KTVLYYYIITRSQDGYATS--LDVINYLI-SHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             CchHHHHHhhCCcccccCC--HHHHHHHH-hCCCCcCccCCCCChHHHHHHHcc
Confidence            99999999999       6  89999999 899999999999999999999875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.01  E-value=1.8e-09  Score=105.50  Aligned_cols=113  Identities=13%  Similarity=0.095  Sum_probs=78.9

Q ss_pred             cceeecCCCCCcHHH-HHHHcChHHHHHHHHHhCC--Cc--------------------------c-------------c
Q 042220            5 AACISDNDQKMTALL-LAAGRGHIRVVNEIISTCP--DC--------------------------C-------------K   42 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh-~Aa~~g~~~~v~~Ll~~~~--~~--------------------------~-------------~   42 (255)
                      .+|..|. .|+|||| .|+.+++.++++.|++++.  ..                          .             .
T Consensus        44 ~in~~d~-~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~  122 (743)
T TIGR00870        44 NINCPDR-LGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYT  122 (743)
T ss_pred             CCCCcCc-cchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccc
Confidence            4566677 8888888 7777778888888877662  00                          0             0


Q ss_pred             ccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC--------------CCCCchhHHHHHhhhhc------cchh
Q 042220           43 QVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD--------------VNGNTPLHVLAAVLQKE------KTAV  102 (255)
Q Consensus        43 ~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d--------------~~G~TpLh~A~~~~~~~------~~~~  102 (255)
                      ..+..|+||||+|+.+|+  .++++.|+ +.|++++.++              .+|.||||.|+..++.+      ++..
T Consensus       123 ~~~~~G~TpLhlAa~~~~--~eiVklLL-~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga  199 (743)
T TIGR00870       123 SEFTPGITALHLAAHRQN--YEIVKLLL-ERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA  199 (743)
T ss_pred             cccCCCCcHHHHHHHhCC--HHHHHHHH-hCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence            012358999999999999  99999999 6788888653              35899999999887665      2222


Q ss_pred             hhHHHHhhccchHHHHHHH
Q 042220          103 EEGEIKELKPRHTIVATLI  121 (255)
Q Consensus       103 ~~~~~~~~~~~~~vvA~Li  121 (255)
                      +.....+.+++.++.|+.-
T Consensus       200 din~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       200 DILTADSLGNTLLHLLVME  218 (743)
T ss_pred             chhhHhhhhhHHHHHHHhh
Confidence            2234445567777766655

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.98  E-value=3.7e-10  Score=91.68  Aligned_cols=81  Identities=17%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      +..++|..|++.|..++++.|+.+++|+ +.-|.+|-|||-+|++.++  .++++.|+ +.|++++..|..|++++.+|+
T Consensus       192 ~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnh--vkcve~Ll-~sGAd~t~e~dsGy~~mdlAV  267 (296)
T KOG0502|consen  192 YRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNH--VKCVESLL-NSGADVTQEDDSGYWIMDLAV  267 (296)
T ss_pred             hhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCCh--HHHHHHHH-hcCCCcccccccCCcHHHHHH
Confidence            5679999999999999999999999999 8999999999999999999  99999999 899999999999999999999


Q ss_pred             Hhhhh
Q 042220           93 AVLQK   97 (255)
Q Consensus        93 ~~~~~   97 (255)
                      ..|..
T Consensus       268 alGyr  272 (296)
T KOG0502|consen  268 ALGYR  272 (296)
T ss_pred             HhhhH
Confidence            88553

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.95  E-value=1e-09  Score=103.45  Aligned_cols=83  Identities=28%  Similarity=0.226  Sum_probs=72.6

Q ss_pred             eecCCCCCcHHHHHHHcChHHHHHHHHHhCCCccccc---------c--------------cCCchHHHHHHHhCCchHH
Q 042220            8 ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQV---------D--------------ERGWNLLHFAMASSNLFQL   64 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~---------d--------------~~G~t~Lh~A~~~g~~~~~   64 (255)
                      ..|.+.|.||||+|..+.+.+.++.|++.++|+ +.+         |              ..|+.||..|+..++  .+
T Consensus       178 ~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq--~e  254 (782)
T KOG3676|consen  178 TSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQ--PE  254 (782)
T ss_pred             hhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCC--HH
Confidence            344468999999999999999999999999987 331         2              247889999999999  99


Q ss_pred             HHHHHhhhhhhhhhccCCCCCchhHHHHHh
Q 042220           65 HSRLRNRSVEMLINKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        65 ~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~   94 (255)
                      ++++|+ ++|+|+|++|.+|||.||..+.+
T Consensus       255 ivrlLl-~~gAd~~aqDS~GNTVLH~lVi~  283 (782)
T KOG3676|consen  255 IVRLLL-AHGADPNAQDSNGNTVLHMLVIH  283 (782)
T ss_pred             HHHHHH-hcCCCCCccccCCChHHHHHHHH
Confidence            999999 79999999999999999998765

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=1.4e-09  Score=97.99  Aligned_cols=71  Identities=28%  Similarity=0.335  Sum_probs=43.8

Q ss_pred             HHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHh
Q 042220           20 LAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        20 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~   94 (255)
                      -|+..|..++|+..+..-.|. .+.+..|-|+||-|+..||  .+++++|+ +.|+++|..|.+|+||||.|+..
T Consensus       556 DaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCagh--yeIVkFLi-~~ganVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGH--YEIVKFLI-EFGANVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcch--hHHHHHHH-hcCCcccCccCCCCchhhhhhhc
Confidence            355566666666666555555 4555566666666666666  66666666 56666666666666666666554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.87  E-value=2.1e-09  Score=97.04  Aligned_cols=81  Identities=23%  Similarity=0.246  Sum_probs=75.7

Q ss_pred             eecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCch
Q 042220            8 ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTP   87 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~Tp   87 (255)
                      .++. +|.|.||.|+.+|..++.+.|++.+.++ +.+|.+||||||.|+..|+  .+++++|+ +.|++++.++..|.||
T Consensus       193 ~~~~-rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~--~~~~elL~-~~ga~~d~~t~~g~~p  267 (527)
T KOG0505|consen  193 ARHA-RGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQ--EDACELLV-EHGADMDAKTKMGETP  267 (527)
T ss_pred             cccc-ccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHhhh--HhHHHHHH-HhhcccchhhhcCCCC
Confidence            4455 6999999999999999999999999998 8999999999999999999  99999887 8999999999999999


Q ss_pred             hHHHHH
Q 042220           88 LHVLAA   93 (255)
Q Consensus        88 Lh~A~~   93 (255)
                      +.+|..
T Consensus       268 ~dv~de  273 (527)
T KOG0505|consen  268 LDVADE  273 (527)
T ss_pred             ccchhh
Confidence            999876

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.87  E-value=1e-09  Score=103.38  Aligned_cols=86  Identities=27%  Similarity=0.249  Sum_probs=79.6

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCccccccc-CCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDE-RGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      +.+|++|. .|+|+||+++..|..+++++|+++|.++ ..+|+ .|+||||-|..+|+  .+++-.|+ +.|..+..+|+
T Consensus        43 n~anikD~-~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~--idca~lLL-~~g~SL~i~Dk  117 (1267)
T KOG0783|consen   43 NLANIKDR-YGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGN--IDCASLLL-SKGRSLRIKDK  117 (1267)
T ss_pred             hhhhHHHh-hccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhch--HHHHHHHH-hcCCceEEecc
Confidence            45789999 9999999999999999999999999998 66675 59999999999999  99999998 88999999999


Q ss_pred             CCCchhHHHHHh
Q 042220           83 NGNTPLHVLAAV   94 (255)
Q Consensus        83 ~G~TpLh~A~~~   94 (255)
                      +|..||..-.+-
T Consensus       118 eglsplq~~~r~  129 (1267)
T KOG0783|consen  118 EGLSPLQFLSRV  129 (1267)
T ss_pred             cCCCHHHHHhhc
Confidence            999999998883

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.85  E-value=1.5e-09  Score=101.52  Aligned_cols=91  Identities=15%  Similarity=0.076  Sum_probs=81.7

Q ss_pred             CCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            3 KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         3 ~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      ...+.++|. .|.+|||+|++.|+.|+++.++.+.... +..+..|.||||.|+++||  .+.+.+|+ +.+++.-.+|+
T Consensus        72 ea~ldl~d~-kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh--~dvv~~Ll-~~~adp~i~nn  146 (854)
T KOG0507|consen   72 EALLDLCDT-KGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGH--LEVVFYLL-KKNADPFIRNN  146 (854)
T ss_pred             hhhhhhhhc-cCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcc--hHHHHHHH-hcCCCccccCc
Confidence            345667788 9999999999999999999999998444 8889999999999999999  99999999 88999999999


Q ss_pred             CCCchhHHHHHhhhhc
Q 042220           83 NGNTPLHVLAAVLQKE   98 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~~   98 (255)
                      .+.|+|.+|++.|..+
T Consensus       147 s~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen  147 SKETVLDLASRFGRAE  162 (854)
T ss_pred             ccccHHHHHHHhhhhH
Confidence            9999999999985543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.83  E-value=1.2e-08  Score=83.58  Aligned_cols=87  Identities=26%  Similarity=0.247  Sum_probs=75.6

Q ss_pred             eecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCC---chHHHHHHHhhhhhh---hhhccC
Q 042220            8 ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSN---LFQLHSRLRNRSVEM---LINKQD   81 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~---~~~~~~~~Ll~~~~~---~i~~~d   81 (255)
                      ..+. .+.+++|.++..+..+++++++..+.+. +.+|..|.||||+|+..++   ...++++.|+ +.|.   ..+.+|
T Consensus        68 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~  144 (235)
T COG0666          68 ARDL-DGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLL-EAGADLDVNNLRD  144 (235)
T ss_pred             cCCc-cccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHH-HcCCCCCCccccC
Confidence            3444 6899999999999999999999999999 8999999999999999987   2247889998 6777   677789


Q ss_pred             CCCCchhHHHHHhhhh
Q 042220           82 VNGNTPLHVLAAVLQK   97 (255)
Q Consensus        82 ~~G~TpLh~A~~~~~~   97 (255)
                      .+|+||||+|+..++.
T Consensus       145 ~~g~tpl~~A~~~~~~  160 (235)
T COG0666         145 EDGNTPLHWAALNGDA  160 (235)
T ss_pred             CCCCchhHHHHHcCch
Confidence            9999999999998543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.70  E-value=5.8e-08  Score=87.76  Aligned_cols=78  Identities=21%  Similarity=0.232  Sum_probs=66.2

Q ss_pred             eecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhc-cCCCCCc
Q 042220            8 ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINK-QDVNGNT   86 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~-~d~~G~T   86 (255)
                      ..|+ +|-|+||-|+..||.++|++|++.+.++ +..|.+||||||+|+..++  ..+++.|. +.|+.+-+ .=.++.|
T Consensus       578 qpNd-EGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNn--v~~ckqLV-e~GaavfAsTlSDmeT  652 (752)
T KOG0515|consen  578 QPND-EGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNN--VPMCKQLV-ESGAAVFASTLSDMET  652 (752)
T ss_pred             CCCc-cchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCc--hHHHHHHH-hccceEEeeecccccc
Confidence            4456 8999999999999999999999999999 8999999999999999999  99999999 56655543 3456777


Q ss_pred             hhHH
Q 042220           87 PLHV   90 (255)
Q Consensus        87 pLh~   90 (255)
                      +..-
T Consensus       653 a~eK  656 (752)
T KOG0515|consen  653 AAEK  656 (752)
T ss_pred             hhhh
Confidence            7443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.69  E-value=1.2e-08  Score=91.05  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=77.3

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      ++..++++|++.|+...++.+.-.+.|. +.+|.+.||+||+|+..|+  .+++++|++..+.+.+.+|+.|+|||.-|.
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~--v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGH--VEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCc--eeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            5677899999999999999999999998 9999999999999999999  999999998889999999999999999999


Q ss_pred             Hhhhhc
Q 042220           93 AVLQKE   98 (255)
Q Consensus        93 ~~~~~~   98 (255)
                      ..+|.+
T Consensus       582 ~F~h~~  587 (622)
T KOG0506|consen  582 HFKHKE  587 (622)
T ss_pred             hcCcHH
Confidence            886654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.62  E-value=6.6e-08  Score=86.72  Aligned_cols=79  Identities=20%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             HHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhh
Q 042220           17 ALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        17 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~   96 (255)
                      -||-.++.|+.|..-.|+..|++.+..--+.|.||||+|++.|+  ...+++|. -.|++++..|.+|.||+.+|-..||
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq--~~Q~ElL~-vYGAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQ--ILQAELLA-VYGADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccc--hhhhhHHh-hccCCCCCCCCCCCcHHHHHHhcCc
Confidence            48999999999999999999999955555679999999999999  88899887 7999999999999999999998877


Q ss_pred             hc
Q 042220           97 KE   98 (255)
Q Consensus        97 ~~   98 (255)
                      .+
T Consensus       213 ~~  214 (669)
T KOG0818|consen  213 HE  214 (669)
T ss_pred             hH
Confidence            54

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.58  E-value=7.7e-08  Score=55.49  Aligned_cols=32  Identities=31%  Similarity=0.374  Sum_probs=22.3

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccc
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVD   45 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d   45 (255)
                      +|+||||+|+++|+.++++.|+++++++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            4677777777777777777777777766 4444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.58  E-value=7e-08  Score=54.41  Aligned_cols=28  Identities=32%  Similarity=0.443  Sum_probs=23.6

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCc
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDC   40 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~   40 (255)
                      +|+||||+|++.|+.|++++|+++++|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4788888888888888888888888776

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.46  E-value=3.9e-07  Score=77.03  Aligned_cols=81  Identities=22%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             CCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhc-cCCCCCchhHHHH
Q 042220           14 KMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINK-QDVNGNTPLHVLA   92 (255)
Q Consensus        14 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~-~d~~G~TpLh~A~   92 (255)
                      -..||.-+..+|..+-...|++.-.++ +.+|.+|.++|..|+..|+  .++++.++ +.|+++|. ++..+.||||.|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGn--l~~v~lll-~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGN--LTLVELLL-ELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCc--HHHHHHHH-HhCCCcCcccccccccHHHHHH
Confidence            468999999999999999999886666 8899999999999999999  99999999 89999995 5778999999999


Q ss_pred             Hhhhhc
Q 042220           93 AVLQKE   98 (255)
Q Consensus        93 ~~~~~~   98 (255)
                      ..|+.+
T Consensus        88 LSGn~d   93 (396)
T KOG1710|consen   88 LSGNQD   93 (396)
T ss_pred             HcCCch
Confidence            997765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.45  E-value=2.1e-07  Score=53.66  Aligned_cols=33  Identities=24%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             CCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220           47 RGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus        47 ~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      +|+||||+|+++|+  .+++++|+ +.|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~--~~~v~~Ll-~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGH--PDIVKLLL-KHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTC--HHHHHHHH-HTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHH--HHHHHHHH-HCcCCCCCCCC
Confidence            59999999999999  99999999 79999999885

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.38  E-value=3e-07  Score=51.79  Aligned_cols=30  Identities=20%  Similarity=0.116  Sum_probs=27.0

Q ss_pred             CCchHHHHHHHhCCchHHHHHHHhhhhhhhhhc
Q 042220           47 RGWNLLHFAMASSNLFQLHSRLRNRSVEMLINK   79 (255)
Q Consensus        47 ~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~   79 (255)
                      +|+||||+|+++|+  .+++++|+ +.|+++|.
T Consensus         1 ~G~T~Lh~A~~~g~--~e~v~~Ll-~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGN--IEIVKYLL-EHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCC--HHHHHHHH-HcCCCCCC
Confidence            59999999999999  99999999 67888763

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.35  E-value=6.6e-07  Score=81.70  Aligned_cols=84  Identities=25%  Similarity=0.275  Sum_probs=73.5

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCC-cccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPD-CCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ..++. +..+.||+|++.|+-|++++++.++|. +.+..|++|.|+||-|+..++  ..+.+++. +.|+.+...|..|.
T Consensus       893 l~~~~-~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~--r~vc~~lv-dagasl~ktd~kg~  968 (1004)
T KOG0782|consen  893 LIQGP-DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN--RAVCQLLV-DAGASLRKTDSKGK  968 (1004)
T ss_pred             EeeCc-chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc--hHHHHHHH-hcchhheecccCCC
Confidence            45666 788999999999999999999999985 336678999999999999999  88888888 88999999999999


Q ss_pred             chhHHHHHh
Q 042220           86 TPLHVLAAV   94 (255)
Q Consensus        86 TpLh~A~~~   94 (255)
                      ||-.-|-+.
T Consensus       969 tp~eraqqa  977 (1004)
T KOG0782|consen  969 TPQERAQQA  977 (1004)
T ss_pred             ChHHHHHhc
Confidence            997766554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.29  E-value=1.5e-06  Score=78.90  Aligned_cols=61  Identities=25%  Similarity=0.286  Sum_probs=42.8

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHh
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN   70 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll   70 (255)
                      +..+|. .|+||||.|+..|+.+.++.|+..+++. ..+|++||+|||-|+..|+  .+++..++
T Consensus        48 id~~D~-~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~--~q~i~~vl  108 (560)
T KOG0522|consen   48 IDRRDP-PGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN--EQIITEVL  108 (560)
T ss_pred             eccccC-CCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC--HHHHHHHH
Confidence            344566 6777777777777777777777777776 6677777777777777777  65554444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.16  E-value=4.7e-06  Score=75.70  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=66.1

Q ss_pred             cHHHHHHHcChHHHHHH-HHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHh
Q 042220           16 TALLLAAGRGHIRVVNE-IISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        16 tpLh~Aa~~g~~~~v~~-Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~   94 (255)
                      .|+|+++.....+-.+. +...-....+.+|..|+||||+|+..|+  ...++.|+ ..++++..+|++|++|||-|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~--~~~a~~Ll-~a~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGH--VEAARILL-SAGADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcC--HHHHHHHH-hcCCCccccccccccHHHHHHHc
Confidence            45999998877766654 3333344457789999999999999999  99999998 78999999999999999999988


Q ss_pred             hhhc
Q 042220           95 LQKE   98 (255)
Q Consensus        95 ~~~~   98 (255)
                      +..+
T Consensus        99 g~~q  102 (560)
T KOG0522|consen   99 GNEQ  102 (560)
T ss_pred             CCHH
Confidence            6553

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.15  E-value=2.9e-06  Score=77.66  Aligned_cols=59  Identities=24%  Similarity=0.201  Sum_probs=51.2

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhh
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM   75 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~   75 (255)
                      +|+|+||.||+.|++.+.++|+.++.|+ ..+|.+|+|+|.||-+.|.  .+++.+|+ ..|+
T Consensus       660 ~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s--qec~d~ll-q~gc  718 (749)
T KOG0705|consen  660 DGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS--QECIDVLL-QYGC  718 (749)
T ss_pred             CCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc--HHHHHHHH-HcCC
Confidence            7889999999999999999999999888 7889999999999999988  89998888 4543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.05  E-value=3e-06  Score=82.28  Aligned_cols=78  Identities=24%  Similarity=0.276  Sum_probs=73.2

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      .|.|+||.|+..|....++.|++.++++ +.+|..|+||+|.+...|+  ......++ ++|++.+..|.+|.+||++|.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~--~~~~~~ll-~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGH--TSIACLLL-KRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcc--cchhhhhc-cccccccccCccCcchhhHHh
Confidence            5799999999999999999999999997 9999999999999999999  88888887 799999999999999999997


Q ss_pred             Hh
Q 042220           93 AV   94 (255)
Q Consensus        93 ~~   94 (255)
                      ..
T Consensus       731 ~~  732 (785)
T KOG0521|consen  731 EA  732 (785)
T ss_pred             hh
Confidence            76

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=97.92  E-value=3.4e-06  Score=82.47  Aligned_cols=81  Identities=16%  Similarity=0.125  Sum_probs=64.1

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhc-cCCCCCchhHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINK-QDVNGNTPLHVL   91 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~-~d~~G~TpLh~A   91 (255)
                      +-.|+|-.||..||.|.+++|+.+++++ +.+|+.|.+||.+|+..||  ..+++.|+ +..+++++ .|+.++|+|.+|
T Consensus       756 n~~t~LT~acaggh~e~vellv~rgani-ehrdkkgf~plImaatagh--~tvV~~ll-k~ha~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANI-EHRDKKGFVPLIMAATAGH--ITVVQDLL-KAHADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccc-cccccccchhhhhhcccCc--hHHHHHHH-hhhhhhhhhcccccCceEEEe
Confidence            4568888888888888888888888887 8888888888888888888  88888887 55677765 477788888888


Q ss_pred             HHhhhh
Q 042220           92 AAVLQK   97 (255)
Q Consensus        92 ~~~~~~   97 (255)
                      +.-+..
T Consensus       832 csggr~  837 (2131)
T KOG4369|consen  832 CSGGRT  837 (2131)
T ss_pred             cCCCcc
Confidence            765443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.86  E-value=7.3e-06  Score=73.60  Aligned_cols=62  Identities=26%  Similarity=0.251  Sum_probs=56.0

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHh
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN   70 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll   70 (255)
                      ++.+|- +.+|+||.||..|+++++++|++.+....+.+|+.|+|||.-|...+|  .+++++|-
T Consensus       532 ~~~~Dy-D~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h--~~v~k~L~  593 (622)
T KOG0506|consen  532 LETKDY-DDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH--KEVVKLLE  593 (622)
T ss_pred             cccccc-ccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc--HHHHHHHH
Confidence            456777 899999999999999999999998766558899999999999999999  99999885

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=97.83  E-value=7.9e-06  Score=79.98  Aligned_cols=89  Identities=21%  Similarity=0.242  Sum_probs=81.5

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      +..+|+ .|.+||.+|+-.||..+++.|+++++++-.+.|+.+.|+|.+||..|+  .++++.|+ ..|++-..++....
T Consensus       783 iehrdk-kgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr--~~vvelLl-~~gankehrnvsDy  858 (2131)
T KOG4369|consen  783 IEHRDK-KGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGR--TRVVELLL-NAGANKEHRNVSDY  858 (2131)
T ss_pred             cccccc-ccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCc--chHHHHHH-Hhhccccccchhhc
Confidence            456888 999999999999999999999999999967789999999999999999  99999999 88999999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      |||.+|..-+..+
T Consensus       859 tPlsla~Sggy~~  871 (2131)
T KOG4369|consen  859 TPLSLARSGGYTK  871 (2131)
T ss_pred             CchhhhcCcchHH
Confidence            9999998765554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.79  E-value=4.1e-05  Score=69.20  Aligned_cols=56  Identities=18%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             CCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHh
Q 042220           12 DQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN   70 (255)
Q Consensus        12 ~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll   70 (255)
                      +.|.||||.|++.|+..-++.|+-+|+|+ ...|.+|+||+.+|-..||  -++.+-|+
T Consensus       165 ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH--~~laeRl~  220 (669)
T KOG0818|consen  165 EKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGH--HELAERLV  220 (669)
T ss_pred             ccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCc--hHHHHHHH
Confidence            36999999999999999999999999999 8899999999999999999  66665554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.75  E-value=6.3e-05  Score=60.22  Aligned_cols=64  Identities=19%  Similarity=0.086  Sum_probs=58.2

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhC-CCcccccccCCchHHHHHHHhCCchHHHHHHHhh
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTC-PDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNR   71 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~   71 (255)
                      ..+|.+|. .||||++.|+..|+.+.+.+|+.++ +++ ...|..|.+++.+|-+.|+  .++++.|.+
T Consensus         3 ~~in~rD~-fgWTalmcaa~eg~~eavsyllgrg~a~v-gv~d~ssldaaqlaek~g~--~~fvh~lfe   67 (223)
T KOG2384|consen    3 GNINARDA-FGWTALMCAAMEGSNEAVSYLLGRGVAFV-GVTDESSLDAAQLAEKGGA--QAFVHSLFE   67 (223)
T ss_pred             CCccchhh-hcchHHHHHhhhcchhHHHHHhccCcccc-cccccccchHHHHHHhcCh--HHHHHHHHH
Confidence            35789999 9999999999999999999999999 555 8999999999999999999  998888863

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.59  E-value=1.7e-05  Score=75.71  Aligned_cols=65  Identities=20%  Similarity=0.168  Sum_probs=57.8

Q ss_pred             HHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC-CCchhHHHHHhhhhc
Q 042220           31 NEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN-GNTPLHVLAAVLQKE   98 (255)
Q Consensus        31 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~-G~TpLh~A~~~~~~~   98 (255)
                      ..+-+.|.+..+.+|..|||+||+++..++  .+++++|+ +.|++++.+|.+ |.||||-|...|+.+
T Consensus        35 ~F~~k~c~n~anikD~~GR~alH~~~S~~k--~~~l~wLl-qhGidv~vqD~ESG~taLHRaiyyG~id  100 (1267)
T KOG0783|consen   35 GFSEKSCQNLANIKDRYGRTALHIAVSENK--NSFLRWLL-QHGIDVFVQDEESGYTALHRAIYYGNID  100 (1267)
T ss_pred             HHHHHhhhhhhhHHHhhccceeeeeeccch--hHHHHHHH-hcCceeeeccccccchHhhHhhhhchHH
Confidence            345556777778999999999999999999  99999999 679999999986 999999999998876

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.48  E-value=5e-05  Score=74.15  Aligned_cols=82  Identities=23%  Similarity=0.213  Sum_probs=65.0

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHh-CCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIIST-CPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVL   91 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A   91 (255)
                      .|++.+|.++..++...++.+++. +... ...|.+|...+|..+ .++  .+...++..-.+..++.+|.+|+||||+|
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg--~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALG--YEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcC--CceeEEEEeecccccccccCCCCcccchH
Confidence            689999999999999999999986 4333 567888999999944 444  45554444346788999999999999999


Q ss_pred             HHhhhhc
Q 042220           92 AAVLQKE   98 (255)
Q Consensus        92 ~~~~~~~   98 (255)
                      +..|+.+
T Consensus       649 a~~G~e~  655 (975)
T KOG0520|consen  649 AFRGREK  655 (975)
T ss_pred             hhcCHHH
Confidence            9998764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.44  E-value=0.00021  Score=65.83  Aligned_cols=74  Identities=18%  Similarity=0.160  Sum_probs=59.8

Q ss_pred             HHHHHHcChHHHHHHHHHhCCCc--c-cccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHh
Q 042220           18 LLLAAGRGHIRVVNEIISTCPDC--C-KQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        18 Lh~Aa~~g~~~~v~~Ll~~~~~~--~-~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~   94 (255)
                      |..|....+...+-.|+.++...  . ..-+.+|+|+||+|+..|+  ..+.+.|+ =.|.++..+|.+|+|+|.||-+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gn--Vvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGN--VVLAQLLI-WYGVDVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcc--hhHHHHHH-HhCccceecccCCchhhhhHhhc
Confidence            45566667778888888887543  1 1235678999999999999  88888877 68999999999999999999887

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.37  E-value=0.00052  Score=60.45  Aligned_cols=68  Identities=16%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             cHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCch
Q 042220           16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTP   87 (255)
Q Consensus        16 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~Tp   87 (255)
                      --|..||+.|..+.++.|++.|-++ |.+|+...+||.+|+..||  .+.+++|+ +.|+..+.-..+|.-.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGH--e~vvklLL-enGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGH--EDVVKLLL-ENGAICSRDTFDGDRC  105 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCc--HHHHHHHH-HcCCcccccccCcchh
Confidence            3478999999999999999999888 8999999999999999999  99999999 7787776666666654

>smart00248 ANK ankyrin repeats

Probab=96.76  E-value=0.0025  Score=33.56  Aligned_cols=28  Identities=32%  Similarity=0.420  Sum_probs=22.7

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCc
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDC   40 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~   40 (255)
                      +|.||+|+|+..|+.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3678888888888888888888877654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.53  E-value=0.0028  Score=50.92  Aligned_cols=54  Identities=11%  Similarity=0.071  Sum_probs=49.2

Q ss_pred             cccccCCchHHHHHHHhCCchHHHHHHHhhhhh-hhhhccCCCCCchhHHHHHhhhhc
Q 042220           42 KQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE-MLINKQDVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        42 ~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~-~~i~~~d~~G~TpLh~A~~~~~~~   98 (255)
                      +.+|..|||+++.|+..|+  .+.+.+|+ .+| +.+...|..|++++.+|-+.++.+
T Consensus         6 n~rD~fgWTalmcaa~eg~--~eavsyll-grg~a~vgv~d~ssldaaqlaek~g~~~   60 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGS--NEAVSYLL-GRGVAFVGVTDESSLDAAQLAEKGGAQA   60 (223)
T ss_pred             cchhhhcchHHHHHhhhcc--hhHHHHHh-ccCcccccccccccchHHHHHHhcChHH
Confidence            7899999999999999999  99999999 667 899999999999999999886543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=96.50  E-value=0.0046  Score=57.26  Aligned_cols=77  Identities=19%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             HHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhh-hhhhhccCCCCCchhHHHHHhhh
Q 042220           18 LLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSV-EMLINKQDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        18 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~-~~~i~~~d~~G~TpLh~A~~~~~   96 (255)
                      +..|+..++.--.++.-..+.+. -.++.+.++.||+|+..|+  .+++++++.+. ...++..|..|.|+||-|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~--~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGN--GEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCC--hHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            45667777665556666667776 6789999999999999999  99999999432 24678899999999999988744


Q ss_pred             h
Q 042220           97 K   97 (255)
Q Consensus        97 ~   97 (255)
                      .
T Consensus       947 r  947 (1004)
T KOG0782|consen  947 R  947 (1004)
T ss_pred             h
Confidence            3

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.49  E-value=0.00095  Score=65.49  Aligned_cols=85  Identities=15%  Similarity=0.050  Sum_probs=58.5

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhh------hhccCC
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEML------INKQDV   82 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~------i~~~d~   82 (255)
                      .|+ +|.--+|. |..++.+..-+++.......+.+|.+||||||+|+.+|+  ..++..|. +.|++      ....+-
T Consensus       604 ld~-d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~--e~l~a~l~-~lga~~~~~tdps~~~p  678 (975)
T KOG0520|consen  604 LDR-DGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGR--EKLVASLI-ELGADPGAVTDPSPETP  678 (975)
T ss_pred             hcc-cCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCH--HHHHHHHH-HhccccccccCCCCCCC
Confidence            445 66666777 555555555555554444448899999999999999999  88888876 33332      334455


Q ss_pred             CCCchhHHHHHhhhhc
Q 042220           83 NGNTPLHVLAAVLQKE   98 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~~   98 (255)
                      .|.|+-.+|..+|+..
T Consensus       679 ~g~ta~~la~s~g~~g  694 (975)
T KOG0520|consen  679 GGKTAADLARANGHKG  694 (975)
T ss_pred             CCCchhhhhhcccccc
Confidence            6888888888776654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.63  E-value=0.008  Score=54.83  Aligned_cols=40  Identities=23%  Similarity=0.204  Sum_probs=19.4

Q ss_pred             cHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHH
Q 042220           16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAM   56 (255)
Q Consensus        16 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~   56 (255)
                      |+||+|+..|..+++.++|+.+.|+ ..+|..|+||..++.
T Consensus       432 T~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  432 TFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            4455555555555555555544444 344445555544443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.54  E-value=0.017  Score=52.82  Aligned_cols=64  Identities=16%  Similarity=0.088  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhCCCcc-----cccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHH
Q 042220           27 IRVVNEIISTCPDCC-----KQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAA   93 (255)
Q Consensus        27 ~~~v~~Ll~~~~~~~-----~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~   93 (255)
                      ...+++|.++..+.+     +..|.---|+||+|+.+|.  .+++.+++ +-+++...+|..|.||..++..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~--~k~v~~~L-eeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGA--RKCVKYFL-EEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcch--HHHHHHHH-HhcCCchhcccCCCCccccccc
Confidence            566777777665442     2234556799999999999  99999999 5679999999999999999874

>smart00248 ANK ankyrin repeats

Probab=95.50  E-value=0.017  Score=30.11  Aligned_cols=27  Identities=22%  Similarity=0.115  Sum_probs=22.6

Q ss_pred             CCchHHHHHHHhCCchHHHHHHHhhhhhhh
Q 042220           47 RGWNLLHFAMASSNLFQLHSRLRNRSVEML   76 (255)
Q Consensus        47 ~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~   76 (255)
                      +|.||+|+++..++  .++++.++ +.+.+
T Consensus         1 ~~~~~l~~~~~~~~--~~~~~~ll-~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGN--LEVVKLLL-DKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCC--HHHHHHHH-HcCCC
Confidence            47899999999999  99999998 44443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=95.12  E-value=0.027  Score=55.37  Aligned_cols=51  Identities=27%  Similarity=0.249  Sum_probs=45.5

Q ss_pred             ccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhhhc
Q 042220           45 DERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        45 d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~~   98 (255)
                      -..|.|+||.|+..+.  ....+.|+ +.|+++|.+|..|+||+|.+...|+..
T Consensus       653 ~~~~~s~lh~a~~~~~--~~~~e~ll-~~ga~vn~~d~~g~~plh~~~~~g~~~  703 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGD--SGAVELLL-QNGADVNALDSKGRTPLHHATASGHTS  703 (785)
T ss_pred             hhcccchhhhhhccch--HHHHHHHH-hcCCcchhhhccCCCcchhhhhhcccc
Confidence            3567999999999999  88889888 789999999999999999999886654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.77  E-value=0.082  Score=51.37  Aligned_cols=52  Identities=23%  Similarity=0.205  Sum_probs=29.8

Q ss_pred             HHHHHHHcChHHHHHHHHHhCCC---cccccccCCchHHHHHHHhCCchHHHHHHHh
Q 042220           17 ALLLAAGRGHIRVVNEIISTCPD---CCKQVDERGWNLLHFAMASSNLFQLHSRLRN   70 (255)
Q Consensus        17 pLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll   70 (255)
                      -...|+++|+...++..++....   ..+.+|.-|+++||.|..+.+  .++.+.|+
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nen--le~~eLLl   82 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNEN--LELQELLL   82 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccccc--HHHHHHHh
Confidence            34556666666666666655433   124556666666666666666  55555554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.76  E-value=0.11  Score=50.58  Aligned_cols=67  Identities=12%  Similarity=-0.027  Sum_probs=48.1

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCc-------------------------c----------cccccCCc
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDC-------------------------C----------KQVDERGW   49 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~-------------------------~----------~~~d~~G~   49 (255)
                      .+|..|. -|+++||.|..+.|.|+.++|+++.-..                         .          ...-.-+.
T Consensus        54 ninc~d~-lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~di  132 (822)
T KOG3609|consen   54 NINCRDP-LGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDI  132 (822)
T ss_pred             chhccCh-HhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCc
Confidence            3567787 8889998888888888888888774111                         0          01112356


Q ss_pred             hHHHHHHHhCCchHHHHHHHhhhhhh
Q 042220           50 NLLHFAMASSNLFQLHSRLRNRSVEM   75 (255)
Q Consensus        50 t~Lh~A~~~g~~~~~~~~~Ll~~~~~   75 (255)
                      ||+.+||..++  .|++++|+ .+|.
T Consensus       133 tPliLAAh~Nn--yEil~~Ll-~kg~  155 (822)
T KOG3609|consen  133 TPLMLAAHLNN--FEILQCLL-TRGH  155 (822)
T ss_pred             cHHHHHHHhcc--hHHHHHHH-HcCC
Confidence            89999999999  99999998 4443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=92.40  E-value=0.15  Score=45.38  Aligned_cols=52  Identities=23%  Similarity=0.291  Sum_probs=41.7

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCccccccc-CCchHHHHHHHhCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDE-RGWNLLHFAMASSN   60 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~g~   60 (255)
                      .+|..|+ ....||.+|+-.||.++++.|+++|+-| . +|. +|..+ |+++.+.+
T Consensus        61 nVN~vD~-fD~spL~lAsLcGHe~vvklLLenGAiC-~-rdtf~G~RC-~YgaLnd~  113 (516)
T KOG0511|consen   61 NVNAVDR-FDSSPLYLASLCGHEDVVKLLLENGAIC-S-RDTFDGDRC-HYGALNDR  113 (516)
T ss_pred             Ccchhhc-ccccHHHHHHHcCcHHHHHHHHHcCCcc-c-ccccCcchh-hhhhhhHH
Confidence            4688899 8899999999999999999999999987 3 444 45544 66666554

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.18  E-value=1.9  Score=29.90  Aligned_cols=50  Identities=20%  Similarity=0.147  Sum_probs=34.6

Q ss_pred             HHHhHhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 042220          157 AFVVSDVIAMVLSLSAVFIHFLTSTKTLRQIWFLFNVAHYSLMASMLAMVVAFVTGTYAMLAP  219 (255)
Q Consensus       157 ~F~~~n~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~m~~af~~~~~~~~~~  219 (255)
                      +++++|..||-.|...+.+.++-.+-+.+ .+            +..+|.++|.+|+-+.+.+
T Consensus        15 awi~f~waafg~s~~m~~~gi~~lPVD~w-~K------------Gy~~MG~lfltgSt~tL~K   64 (95)
T COG4298          15 AWIMFNWAAFGASYFMLGLGIWLLPVDLW-TK------------GYWAMGILFLTGSTVTLVK   64 (95)
T ss_pred             hhHhHHHHHHHHHHHHHHHHhheechHHH-HH------------HHHHHHHHHHhcchhhhhH
Confidence            46889999999998888875555544311 11            4556777888888766654

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=80.01  E-value=4.5  Score=27.48  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=38.7

Q ss_pred             CcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhh
Q 042220           15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRS   72 (255)
Q Consensus        15 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~   72 (255)
                      ..-+..|...|+.|+++.+++.+ ..    |   ...+..|+...+  .+++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~--n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHN--NEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhh--HHHHHHHHHh
Confidence            34678999999999999998654 22    1   457999999999  9999999854

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
2pnn_A	273	Transient receptor potential cation channel subfa	8e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	1e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	4e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-04

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.7 bits (133), Expect = 1e-09
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 16/85 (18%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE 74
            ++   A +G +  + E +    +   + DERG+  L +A ++              V 
Sbjct: 3  SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA-SAFG----EIET----VR 53

Query: 75 MLI------NKQDVNGNTPLHVLAA 93
           L+      +       + L  LA+
Sbjct: 54 FLLEWGADPHILAKERESALS-LAS 77

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 17/89 (19%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           +++  T L+ A+  G I  V  ++    D      +   + L  A ++      ++ +  
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLA-STGG----YTDI-- 84

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAA 93
             V +L+      N  D NG TPL   A 
Sbjct: 85  --VGLLLERDVDINIYDWNGGTPLL-YAV 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.3 bits (106), Expect = 6e-06
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 17/89 (19%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
             ++ +AL LA+  G+  +V  ++    D     D  G   L +A    N    H +   
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYA-VRGN----HVKC-- 117

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAA 93
             VE L+        +  +G TP+  LA 
Sbjct: 118 --VEALLARGADLTTEADSGYTPMD-LAV 143

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 17/84 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D +   T LL A    H++ V  +++   D      + G+  +  A+A            
Sbjct: 99  DWN-GGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYR-------- 148

Query: 70  NRSVEMLI------NKQDVNGNTP 87
            +  +++        + ++    P
Sbjct: 149 -KVQQVIENHILKLFQSNLVPADP 171

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.6 bits (130), Expect = 3e-09
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 17/90 (18%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
            +  M  +      G+   V   +    +   Q D+ G++ LH+A             R
Sbjct: 2  SPE-FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA-CREG--------R 51

Query: 70 NRSVEMLI------NKQDVNGNTPLHVLAA 93
          +  VEMLI      N  +   +TPLH LAA
Sbjct: 52 SAVVEMLIMRGARINVMNRGDDTPLH-LAA 80

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 17/95 (17%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           +     T L LAA  GH  +V +++    D     +E G   LH+A           ++ 
Sbjct: 69  NRGDD-TPLHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYA-CFWG----QDQV- 120

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAAVLQKE 98
               E L+      +  +  G  P+    A L++ 
Sbjct: 121 ---AEDLVANGALVSICNKYGEMPVDKAKAPLREL 152

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 52.8 bits (128), Expect = 6e-09
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 16/89 (17%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
          N +    LL AA  G +  V ++ +     C+ ++ R    LHFA A  N        R 
Sbjct: 5  NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-AGYN--------RV 55

Query: 71 RSVEMLI------NKQDVNGNTPLHVLAA 93
            VE L+      + +D  G  PLH  A 
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLH-NAC 83

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D    +  L  A   GH  V   ++          D   +  LH A A+   +++     
Sbjct: 72  DKG-GLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEA-AAKGKYEI----- 123

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
               ++L+       K++ +GNTPL  L  
Sbjct: 124 ---CKLLLQHGADPTKKNRDGNTPLD-LVK 149

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 15/108 (13%)

Query: 9   SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRL 68
           S+   +   +  AA  G      E+     +   +      N+L+  + ++     +   
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNN-----NDEA 53

Query: 69  RNRSVEMLI------NKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKEL 110
           R +    LI        +   G T                   E+ ++
Sbjct: 54  RYKISMFLINKGADIKSRTKEGTTLFFP--LFQGGGNDITGTTELCKI 99

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 7/102 (6%), Positives = 21/102 (20%), Gaps = 12/102 (11%)

Query: 15  MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE 74
              L         ++   +I+   D   +  + G  L              +       +
Sbjct: 43  YDVLRNNNDEARYKISMFLINKGADIKSR-TKEGTTLFFPLFQGGGNDITGTT---ELCK 98

Query: 75  MLI------NKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKEL 110
           + +                +     +        E   + +L
Sbjct: 99  IFLEKGADITALYKPYKIVVF--KNIFNYFVDENEMIPLYKL 138

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 10/108 (9%), Positives = 26/108 (24%), Gaps = 26/108 (24%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCK----------QVDERGWNLLHFAMASSN 60
             +  T        G   +         + CK           + +    ++   + +  
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTT-----ELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126

Query: 61  LFQLHSRLRNRSVEML-------INKQDVNGNTPLHVLAAVLQKEKTA 101
           + +          +++       +  +D  G T L       QK    
Sbjct: 127 VDENE---MIPLYKLIFSQSGLQLLIKDKWGLTALE-FVKRCQKPIAL 170

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 12/98 (12%), Positives = 23/98 (23%), Gaps = 17/98 (17%)

Query: 6   ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLH 65
              S        + LA       +V  ++           ERG                 
Sbjct: 77  EVHSLWH-GQKPIHLAVMANKTDLVVALVE-------GAKERGQMPESLLNECDER---- 124

Query: 66  SRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVE 103
                   E+  + +   G T LH    +  +    ++
Sbjct: 125 -----EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK 157

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 21/94 (22%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCK----QVDERGWNLLHFAMASSNLFQLH 65
           D   + T L+ A    +   ++ ++ T P          +++G + LH+A    N   + 
Sbjct: 170 DKADE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA-ILINWEDV- 226

Query: 66  SRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                      +      N +D     PL+ L+ 
Sbjct: 227 -------AMRFVEMGIDVNMEDNEHTVPLY-LSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
          +D+ M  + +AA +G    V  +I T      Q +  G   LH A               
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLA-CKFG----CVDT-- 68

Query: 71 RSVEMLI----NKQDVNGNTPLHVLAA 93
             + L          +G  P+H+ A 
Sbjct: 69 --AKYLASVGEVHSLWHGQKPIHL-AV 92

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 13/91 (14%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQ--VDERGWNLLHFAMASSNLFQLHSRL 68
           +++    L L+     + +  E++        Q      G  +L        L  + +  
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP--DRVVWLDFVPAAA 298

Query: 69  RNRSVEML---------INKQDVNGNTPLHV 90
                E+L         + +    G      
Sbjct: 299 DPSKQEVLQLLQEKLDEVVRSLNTGAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 7/88 (7%), Positives = 17/88 (19%), Gaps = 16/88 (18%)

Query: 9   SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRL 68
            D    +  +  AA      V+  +     +  +     G               +    
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRS-LNTGAGGAVKR-KKKAAPAV---- 338

Query: 69  RNRSVEMLI------NKQDVNGNTPLHV 90
                 M +        +  +      V
Sbjct: 339 ----KRMKLAPSAPVRTRSRSRARSSAV 362

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 17/94 (18%)

Query: 6   ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLH 65
             +  N   +  LL ++  G   +V  II    D     ++ G   LH A   +   ++ 
Sbjct: 29  MRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNA-VCAGHTEI- 85

Query: 66  SRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                  V+ L+      N  D +G TPLH  AA
Sbjct: 86  -------VKFLVQFGVNVNAADSDGWTPLH-CAA 111

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 19/90 (21%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
          +   +  +L         +  +E I+       + +     LL  + +    F L     
Sbjct: 2  EITGQ-VSLPPGKRTNLRKTGSERIAHGMR--VKFNPLPLALLLDS-SLEGEFDL----- 52

Query: 70 NRSVEMLI------NKQDVNGNTPLHVLAA 93
             V+ +I      +  +  G T LH  A 
Sbjct: 53 ---VQRIIYEVDDPSLPNDEGITALH-NAV 78

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 21/132 (15%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIIS--TCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
           D+D   T L  AA   +++V   ++            D +        M           
Sbjct: 100 DSD-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT------ 152

Query: 68  LRNRSVEMLI------NKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRH--TIVAT 119
              +  + L          +      L         E   ++EG+   +  R     +  
Sbjct: 153 ---QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE-LPMKEGDCMTIIHREDEDEIEW 208

Query: 120 LIATVTFAAGFT 131
             A +    G+ 
Sbjct: 209 WWARLNDKEGYV 220

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 23/121 (19%), Positives = 34/121 (28%), Gaps = 31/121 (25%)

Query: 5   AACISDNDQKMTALLLAAGRGHIRVVNEIIS-------------TCPDCCKQVDERGWNL 51
           +       +  TAL +A  R     V  ++                P         G   
Sbjct: 84  SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELP 143

Query: 52  LHFAMASSNLFQLHSRLRNRSVEMLI---------NKQDVNGNTPLHVLAAVLQKEKTAV 102
           L  A A +N        +   V  L           +QD  GNT LH L A+    +   
Sbjct: 144 LSLA-ACTN--------QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENT 194

Query: 103 E 103
           +
Sbjct: 195 K 195

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 16  TALLLAAGRGHIRVVNEIISTCPDCC--KQVDERGWNLLHFAMASSNLFQLHSRLRNRSV 73
             L LAA      +V+ +          ++ D RG  +LH  +A ++  + +++   +  
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201

Query: 74  EMLINK-------------QDVNGNTPLHVLAA 93
           ++L+ K              + +G +PL  +AA
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAA 233

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 15/99 (15%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D     T L       ++ +V  ++    +     D  G + L  A+ S N +       
Sbjct: 128 DEHGN-TPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDS----- 180

Query: 70  NRSVEML-------INKQDVNGNTPLHVLAAVLQKEKTA 101
             + E L       +  +D    T LH +         +
Sbjct: 181 -GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 14/102 (13%)

Query: 5   AACISDNDQK-MTALLLAAGRGHIR------------VVNEIISTCPDCCKQVDERGWNL 51
             C+   D    T L        +             ++  I+       +       + 
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 52  LHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAA 93
            +          L +      +  ++N QD NG+T L+ +AA
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN-IAA 291

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 26/123 (21%)

Query: 9   SDNDQKMTALLLAAGRGHIRVVNEI-ISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
           S+           +    ++ VN+   +T  +    VDE G   LH+  + +NL      
Sbjct: 91  SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANL------ 144

Query: 68  LRNRSVEMLI------NKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELKPRHTIVATLI 121
                V+ L+         D  G + L            AV+     +      ++  L 
Sbjct: 145 ---ELVKHLVKHGSNRLYGDNMGESCLVK----------AVKSVNNYDSGTFEALLDYLY 191

Query: 122 ATV 124
             +
Sbjct: 192 PCL 194

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.7 bits (125), Expect = 4e-08
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 17/90 (18%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
             D   T L  A  +GH+ +V +++    D     D  G + +H A A       H+ + 
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLA-AQFG----HTSI- 124

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              V  LI      +  D NG TPL   AA
Sbjct: 125 ---VAYLIAKGQDVDMMDQNGMTPLM-WAA 150

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 18/90 (20%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
          +D     ++ A   G      E++    D  +Q D+    LLH+A A +N        R 
Sbjct: 6  DDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWA-AINN--------RI 55

Query: 71 RSVEMLI------NKQDVN-GNTPLHVLAA 93
            V+  I      ++   +  +TPLH  A 
Sbjct: 56 DLVKYYISKGAIVDQLGGDLNSTPLH-WAT 84

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 18/91 (19%)

Query: 10  DNDQKMTALLLAAGRGH-IRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRL 68
           D +  MT L+ AA R H +     +++                LH+A   +    +    
Sbjct: 139 DQN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA-VLAGNTTV---- 192

Query: 69  RNRSVEMLI------NKQDVNGNTPLHVLAA 93
               + +L+      + Q++ G + L  LA 
Sbjct: 193 ----ISLLLEAGANVDAQNIKGESALD-LAK 218

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.3 bits (124), Expect = 5e-08
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 20/93 (21%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDER---GWNLLHFAMASSNLFQLHS 66
          D D   T L +A  +G++  V+ +++      +++D         LH A+ ++       
Sbjct: 6  DEDGD-TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP----- 59

Query: 67 RLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                V +L+         D +G T  H LA 
Sbjct: 60 ----SVVRLLVTAGASPMALDRHGQTAAH-LAC 87

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 8e-07
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 17/90 (18%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D     + L+ A     + +V  ++    +   Q    G + LH A +   L  L     
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSA-SGRGLLPL----- 198

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              V  L+      + ++ + +TPL  +A 
Sbjct: 199 ---VRTLVRSGADSSLKNCHNDTPLM-VAR 224

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.4 bits (106), Expect = 9e-06
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 16/89 (17%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           N   +TAL +A        V  ++    D      + G + L  A   +N          
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA-VENN--------SL 163

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAA 93
             V++L+      N Q  +G++ LH  A+
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHS-AS 191

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 22/94 (23%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           +N ++ T L LA       VV  +++         D  G    H A    +         
Sbjct: 43  NNLRQ-TPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQTAAHLACEHRSP-------- 92

Query: 70  NRSVEMLI----------NKQDVNGNTPLHVLAA 93
              +  L+            ++ +G T LH +A 
Sbjct: 93  -TCLRALLDSAAPGTLDLEARNYDGLTALH-VAV 124

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 18/98 (18%)

Query: 3   KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLF 62
            S       +     L  AA RG++  + E +          D+ G   L++A       
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWA-CHGG-- 117

Query: 63  QLHSRLRNRSVEMLI-------NKQDVNGNTPLHVLAA 93
             H  +    VEML        N+Q+  G+T LH  AA
Sbjct: 118 --HKDI----VEMLFTQPNIELNQQNKLGDTALH-AAA 148

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 16/89 (17%), Positives = 24/89 (26%), Gaps = 22/89 (24%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
            D   T       +G   ++            +  E   N LH A    NL         
Sbjct: 42  TDMSDTNWWKGTSKGRTGLIPSN------YVAEQAESIDNPLHEAAKRGNL--------- 86

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAA 93
             +   +      N  D  G+T L+  A 
Sbjct: 87  SWLRECLDNRVGVNGLDKAGSTALY-WAC 114

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 17/90 (18%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D     TAL  A   GH  +V  + +       Q ++ G   LH A A       ++ + 
Sbjct: 103 DKAGS-TALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA-AWKG----YADI- 155

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              V++L+      + +++        +A 
Sbjct: 156 ---VQLLLAKGARTDLRNIEKKLAFD-MAT 181

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 10/78 (12%)

Query: 16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM 75
            +  A      R  +E+     D    + +          +      + S         
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIPS--------N 64

Query: 76 LINKQDVNGNTPLHVLAA 93
           + +Q  + + PLH  AA
Sbjct: 65 YVAEQAESIDNPLH-EAA 81

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.3 bits (124), Expect = 8e-08
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 18/92 (19%)

Query: 8   ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
            SD   K T L LAAG   +R+V  ++    D   + D+ G   LH A  S   +++   
Sbjct: 53  ASDGR-KSTPLHLAAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNA-CSYGHYEV--- 106

Query: 68  LRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                 E+L+      N  D+   TPLH  AA
Sbjct: 107 -----TELLLKHGACVNAMDLWQFTPLH-EAA 132

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.6 bits (117), Expect = 7e-07
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 18/99 (18%)

Query: 2  DKSAACISDNDQKMTALLLAAGRGHIRVVNEI-ISTCPDCCKQVDERGWNLLHFAMASSN 60
          D SA  +   + K   LL AA  G+   +  +      + C   D R    LH A A  N
Sbjct: 12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLHLA-AGYN 69

Query: 61 LFQLHSRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                R+    V++L+      + +D  G  PLH  A 
Sbjct: 70 ----RVRI----VQLLLQHGADVHAKDKGGLVPLH-NAC 99

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 14/84 (16%)

Query: 16  TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM 75
            +LL AA    +  V + ++      KQ  +     LH A   ++L     ++     E+
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQ-PQSHETALHCA--VASLHPKRKQV----AEL 232

Query: 76  LI------NKQDVNGNTPLHVLAA 93
           L+      N+++ +  TPLH +AA
Sbjct: 233 LLRKGANVNEKNKDFMTPLH-VAA 255

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 16/86 (18%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           N   MT L +AA R H  V+  +          +D  G   LH A A +   Q       
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRA-ALAGHLQT------ 295

Query: 71  RSVEMLI------NKQDVNGNTPLHV 90
               +L+      +   + G T   +
Sbjct: 296 --CRLLLSYGSDPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 24/93 (25%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDER---GWNLLHFAMASSNLFQLHS 66
           D    +  L  A   GH  V   ++         V+      +  LH A AS N      
Sbjct: 88  DKG-GLVPLHNACSYGHYEVTELLLKHGAC----VNAMDLWQFTPLHEA-ASKN------ 135

Query: 67  RLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
             R     +L+         + +G + + + A 
Sbjct: 136 --RVEVCSLLLSHGADPTLVNCHGKSAVDM-AP 165

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 20/98 (20%)

Query: 5   AACISDNDQKMTALLLAAGRGH---IRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL 61
                      TAL  A    H    +V   ++    +  ++ ++     LH A A    
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK-NKDFMTPLHVA-AERAH 259

Query: 62  FQLHSRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
             +        +E+L       N  D  G T LH  AA
Sbjct: 260 NDV--------MEVLHKHGAKMNALDSLGQTALH-RAA 288

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 21/86 (24%)

Query: 16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRS--V 73
            L  AA RG ++ V  ++         ++  G   L   M               +   
Sbjct: 4  DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM------------FGSTAIA 51

Query: 74 EMLI------NKQDVNGNTPLHVLAA 93
            L+      N QD +G +P+H  AA
Sbjct: 52 LELLKQGASPNVQDTSGTSPVH-DAA 76

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.9 bits (97), Expect = 7e-05
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 17/89 (19%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D     + +  AA  G +  +  ++    D     D  G   +H A         H+ + 
Sbjct: 65  DTS-GTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLA-VQEG----HTAV- 116

Query: 70  NRSVEMLI-----NKQDVNGNTPLHVLAA 93
              V  L      +++D  G TPL  LA 
Sbjct: 117 ---VSFLAAESDLHRRDARGLTPLE-LAL 141

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 14/132 (10%)

Query: 5   AACISDNDQKMTALLLAAGRGHIRVVNEIIS-------------TCPDCCKQVDERGWNL 51
           A+      +  TAL +A  R ++ +V  ++                    +     G   
Sbjct: 92  ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151

Query: 52  LHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKTAVEEGEIKELK 111
           L  A  ++ L  +   L+N      I+ +D  GNT LH     +        +       
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYN 210

Query: 112 PRHTIVATLIAT 123
               + A L  T
Sbjct: 211 EILILGAKLHPT 222

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 5   AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQL 64
              ++DN    T  + +     + +  ++  T     +  + +G   L  A ASS     
Sbjct: 191 LVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE-EITNRKGLTPLALA-ASSG---- 244

Query: 65  HSRLRNRSVEMLINKQDVNGNTPLHVLAA 93
              +    +  ++ + +++     H  AA
Sbjct: 245 KIGV----LAYILQR-EIHEPECRH-AAA 267

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 17/85 (20%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE 74
            ++   A +G +  +   I          DE G+  L +A A+         +    VE
Sbjct: 4  SLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWA-AAHG----QIAV----VE 53

Query: 75 MLI------NKQDVNGNTPLHVLAA 93
           L+              + L  LA 
Sbjct: 54 FLLQNGADPQLLGKGRESALS-LAC 77

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
               + +AL LA  +G+  +V  ++    D  +  D  G   L +A    N    H +  
Sbjct: 66  GKG-RESALSLACSKGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYA-VHGN----HVKC- 117

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              V+ML+        +  +G   +  LA 
Sbjct: 118 ---VKMLLESGADPTIETDSGYNSMD-LAV 143

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 17/89 (19%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           +++  T L+ AA  G I VV  ++    D      +   + L  A  S      ++ +  
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLA-CSKG----YTDI-- 84

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAA 93
             V+ML+      N+ D NG TPL   A 
Sbjct: 85  --VKMLLDCGVDVNEYDWNGGTPLL-YAV 110

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 18/94 (19%)

Query: 6  ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLH 65
                D   T L  AA  GH   V +++S   D   +  + G   LH A A +     H
Sbjct: 2  HMWGSKDGN-TPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLA-AKNG----H 54

Query: 66 SRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
          + +    V++L+      N +  +GNTP H LA 
Sbjct: 55 AEI----VKLLLAKGADVNARSKDGNTPEH-LAK 83

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 17/86 (19%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
             D   T L LAA  GH  +V  +++   D   +  + G    H A   +     H  + 
Sbjct: 39  SKDGN-TPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHLA-KKNG----HHEI- 90

Query: 70  NRSVEMLI------NKQDVNGNTPLH 89
              V++L       N +    +   H
Sbjct: 91  ---VKLLDAKGADVNARSWGSSHHHH 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 48.2 bits (116), Expect = 4e-07
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           +      AL+ AA +GHI  V  ++    +     ++ G+  L  A+      QL+  + 
Sbjct: 103 NRY-GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI- 160

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              V++L+      + +D +G T +   A 
Sbjct: 161 ---VKLLMENGADQSIKDNSGRTAMD-YAN 186

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 18/93 (19%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           ++    +  L A  +G   ++  ++        + +  G N L  A A            
Sbjct: 69  NSISD-SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPA-AEKGHIDN----- 121

Query: 70  NRSVEMLI-------NKQDVNGNTPLHVLAAVL 95
              V++L+       + Q+  G T L   A  L
Sbjct: 122 ---VKLLLEDGREDIDFQNDFGYTALI-EAVGL 150

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.7 bits (107), Expect = 5e-06
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 17/89 (19%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
            +    L  A  R   +V   +  T      +VD  G   L+ A   +N  ++      
Sbjct: 3  TYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIA-VHNNDIEI------ 54

Query: 71 RSVEMLI------NKQDVNGNTPLHVLAA 93
             + LI      N Q+   ++P    A 
Sbjct: 55 --AKALIDRGADINLQNSISDSPYL-YAG 80

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 18/99 (18%), Positives = 25/99 (25%), Gaps = 23/99 (23%)

Query: 8   ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQV-------DERGWNLLHFAMASSN 60
           I D     T L   A         ++I      C          D      L  A   + 
Sbjct: 119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA-VLAR 177

Query: 61  LFQLHSRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                   R R V  L+         + +  + LH  AA
Sbjct: 178 --------RRRLVAYLMKAGADPTIYNKSERSALH-QAA 207

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D D + T L+LA      R+V  ++    D     ++   + LH A A+ +         
Sbjct: 163 DCD-ENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDF-------- 212

Query: 70  NRSVEMLI---------NKQDVNGNTPLHVLAAVLQKEKTAVEE 104
              +  ++          + D NG T L ++A    +++ A  +
Sbjct: 213 -GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 28/101 (27%)

Query: 10  DNDQKMTALLLAAGRGH---IRVVNEIIS-------TCPDCCKQVDERGWNLLHFAMASS 59
           D +  MTAL++ A       +     ++                   +G   LH+A A  
Sbjct: 232 DRN-GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA-AQV 289

Query: 60  NLFQLHSRLRNRSVEMLI-------NKQDVNGNTPLHVLAA 93
           +   +        V+ L+       +KQD +G TP+  LAA
Sbjct: 290 SNMPI--------VKYLVGEKGSNKDKQDEDGKTPIM-LAA 321

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 22/90 (24%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTC---PDCCKQVDERGWNLLHFAMASSNLFQLHS 66
               + TAL  AA   ++ +V  ++       D     DE G   +  A A         
Sbjct: 276 KYKGR-TALHYAAQVSNMPIVKYLVGEKGSNKDKQ---DEDGKTPIMLA-AQEG------ 324

Query: 67  RLRNRSVEMLI------NKQDVNGNTPLHV 90
             R   V  LI         D   +T   +
Sbjct: 325 --RIEVVMYLIQQGASVEAVDATDHTARQL 352

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           + +   T L  A       +V  ++    D   +  + G      A A +   +L     
Sbjct: 35  EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLA-AIAGSVKL----- 87

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              +++ +      N+ D  G T     AA
Sbjct: 88  ---LKLFLSKGADVNECDFYGFTAFM-EAA 113

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 48.2 bits (116), Expect = 7e-07
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 16/84 (19%)

Query: 16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM 75
            L+ A     + +V +++    +   Q +E GW  LH A    +        R   VE+
Sbjct: 7  HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMS--------REDIVEL 57

Query: 76 LI------NKQDVNGNTPLHVLAA 93
          L+        +  NG TP  + AA
Sbjct: 58 LLRHGADPVLRKKNGATPFLL-AA 80

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 28/113 (24%)

Query: 8   ISDNDQKMTALLLAAGRGHIRVVNEIIS---------TCPDCCKQVDERGWNLLHFAMAS 58
             D     TA + AA  G ++ +  +              +  +++ + G   L  A A 
Sbjct: 100 ECDFY-GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA-AE 157

Query: 59  SNLFQLHSRLRNRSVEMLI-------NKQDVNGNTPLHVLAAVLQKEKTAVEE 104
               ++        +++L+       N  D  G   L    A+L  + + VE 
Sbjct: 158 KGHVEV--------LKILLDEMGADVNACDNMGRNALIH--ALLSSDDSDVEA 200

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 22/94 (23%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEI----ISTCPDCCKQVDERGWNLLHFAMASSNLFQLHS 66
           ++    AL+ A        V  I    +    D   +  ERG   L  A        L  
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILA-VEKKHLGL-- 234

Query: 67  RLRNRSVEML-------INKQDVNGNTPLHVLAA 93
                 V+ L       IN  D +G T L  LA 
Sbjct: 235 ------VQRLLEQEHIEINDTDSDGKTALL-LAV 261

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 19/92 (20%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCK--QVDERGWNLLHFAMASSNLFQLHSR 67
            D   TAL LA    H   ++ ++            ++ G   LH A A          
Sbjct: 6  TEDGD-TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA-AILG------- 56

Query: 68 LRNRSVEMLI------NKQDVNGNTPLHVLAA 93
              +VE L          +  G+T LH LA 
Sbjct: 57 -EASTVEKLYAAGAGVLVAERGGHTALH-LAC 86

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 16/89 (17%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           N    T L +A       +V  +     D  K     G   LH A   +           
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA-VEAQ--------AA 205

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAA 93
             +E+L+        +   G TPL   A 
Sbjct: 206 SVLELLLKAGADPTARMYGGRTPLG-SAL 233

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.6 bits (109), Expect = 5e-06
 Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 23/93 (24%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDER---GWNLLHFAMASSNLFQLHS 66
           +     T L LA       V+  ++    D       R   G   L  A        L  
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGAD----PTARMYGGRTPLGSA-LLRPNPIL-- 240

Query: 67  RLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                   +L        +   +  +P    + 
Sbjct: 241 ------ARLLRAHGAPEPEDGGDKLSPCS-SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 14/95 (14%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQ---LHS 66
           +     TAL LA           ++   P   +   +  +                 + S
Sbjct: 75  ERGGH-TALHLACRVRAHTCACVLLQPRPSHPRDASD-TYLTQSQDCTPDTSHAPAAVDS 132

Query: 67  RLRNRS--VEML------INKQDVNGNTPLHVLAA 93
           +    +            +  ++ +G+TPLH +A 
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLH-VAV 166

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 21/96 (21%)

Query: 6   ACISDNDQKMTALLLAAGRGHIRVVNEIIS--TCPDCCKQVDERGWNLLHFAMASSNLFQ 63
                        L A   G    V  ++      +     +  G   LH A    +   
Sbjct: 32  KKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA---NVDGLTALHQA-CIDDNVD 87

Query: 64  LHSRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
           +        V+ L+      N+ D  G  PLH  AA
Sbjct: 88  M--------VKFLVENGANINQPDNEGWIPLHA-AA 114

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           DN+     L  AA  G++ +   +IS        V+  G   L  A   +          
Sbjct: 103 DNE-GWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAME-------- 152

Query: 70  NRSVEMLINKQDVNGNTPLHVLAAVLQKE 98
              ++  +N+Q V+          ++ ++
Sbjct: 153 -ELLQNEVNRQGVDIEAARKEEERIMLRD 180

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 28/115 (24%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
                TAL +AA +G+  V+  +I    D   + D  GW  LH A A     +       
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAA-AHWGKEEA------ 247

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAAVLQKEKTAVEE--GEIKELKPRHTIV 117
               +L+         +  G T   V          A E+  G ++EL+ +  ++
Sbjct: 248 --CRILVENLCDMEAVNKVGQTAFDV----------ADEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 23/94 (24%)

Query: 8  ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
          ++D  QK     L    G    +   +       K   + G   L    A S+       
Sbjct: 3  MADAKQK-RNEQLKRWIGSETDLEPPVVKRKK-TKVKFDDGAVFLA---ACSS------- 50

Query: 68 LRNRS--VEMLI------NKQDVNGNTPLHVLAA 93
              +  V  L+      N  +V+G T LH  A 
Sbjct: 51 --GDTEEVLRLLERGADINYANVDGLTALHQ-AC 81

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 7e-07
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 18/92 (19%)

Query: 8   ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
           ++      T L +AA  GH+  V  ++         + ++G+  LH A A         R
Sbjct: 108 LATTA-GHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVA-AKYG----KVR 160

Query: 68  LRNRSVEMLI------NKQDVNGNTPLHVLAA 93
           +     E+L+      N    NG TPLHV A 
Sbjct: 161 V----AELLLERDAHPNAAGKNGLTPLHV-AV 187

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.3 bits (116), Expect = 9e-07
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
             +  +T L +A    ++ +V  ++             G+  LH A A  N  ++     
Sbjct: 176 GKN-GLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIA-AKQNQVEV----- 227

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
                 L+      N + V G TPLH LAA
Sbjct: 228 ---ARSLLQYGGSANAESVQGVTPLH-LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 17/89 (19%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           +  +T L +A+  GH+ +V  ++          + +    LH A A +     H+ +  
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMA-ARAG----HTEV-- 62

Query: 71 RSVEMLI------NKQDVNGNTPLHVLAA 93
             + L+      N +  +  TPLH  AA
Sbjct: 63 --AKYLLQNKAKVNAKAKDDQTPLHC-AA 88

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 21/91 (23%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIIST--CPDCCKQVDERGWNLLHFAMASSNLFQLHSRL 68
             +  T L +AA  G +RV   ++     P+      + G   LH A    N   +    
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA---GKNGLTPLHVA-VHHNNLDI---- 194

Query: 69  RNRSVEMLI------NKQDVNGNTPLHVLAA 93
               V++L+      +    NG TPLH +AA
Sbjct: 195 ----VKLLLPRGGSPHSPAWNGYTPLH-IAA 220

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 17/89 (19%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           N   +T L L A  GH+ V + +I             G+  LH A    N+         
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNI--------- 324

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAA 93
           + V+ L+      N +   G +PLH  AA
Sbjct: 325 KLVKFLLQHQADVNAKTKLGYSPLH-QAA 352

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 17/89 (19%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           + Q +T L LAA  GH  +V  ++S   +     ++ G   LH   A      +      
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLV-AQEGHVPV------ 293

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAA 93
              ++LI      +     G TPLHV A+
Sbjct: 294 --ADVLIKHGVMVDATTRMGYTPLHV-AS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 24/92 (26%), Positives = 30/92 (32%), Gaps = 22/92 (23%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIIS--TCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
             D   T L  AA  GH  +V  ++     P+        G   LH A A       H  
Sbjct: 77  AKD-DQTPLHCAARIGHTNMVKLLLENNANPN---LATTAGHTPLHIA-AREG----HVE 127

Query: 68  LRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                V  L+            G TPLH +AA
Sbjct: 128 T----VLALLEKEASQACMTKKGFTPLH-VAA 154

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
                 T L +A+  G+I++V  ++    D      + G++ LH A A      +     
Sbjct: 308 TRM-GYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQA-AQQGHTDI----- 359

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              V +L+      N+   +G TPL  +A 
Sbjct: 360 ---VTLLLKNGASPNEVSSDGTTPLA-IAK 385

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 17/90 (18%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
                 T+   A     + +V+  +S  P           + +H     +     H  + 
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHIT-IKNG----HVDM- 176

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              + +L+      N  +     P   LA 
Sbjct: 177 ---MILLLDYMTSTNTNNSLLFIPDIKLAI 203

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWN-LLHFAMASSNLFQLHSRL 68
           D+    TAL  A   G+++ V   +           + GW    + A+  +++       
Sbjct: 92  DDK-GNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDV------- 142

Query: 69  RNRSVEMLI-----NKQDVNGNTPLHVLAA 93
               V   +             + +H +  
Sbjct: 143 --SIVSYFLSEIPSTFDLAILLSCIH-ITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 22/91 (24%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDER-GWNLLHFAMASSNLFQLHSRL 68
           D     +A   A    ++R+V  +++         +       LH A A+          
Sbjct: 28  DVHGH-SASYYAIADNNVRLVCTLLNAGAL----KNLLENEFPLHQA-ATLE-------- 73

Query: 69  RNRSVEMLI------NKQDVNGNTPLHVLAA 93
             + V++L+      ++ D  GNT L+  A 
Sbjct: 74  DTKIVKILLFSGLDDSQFDDKGNTALY-YAV 103

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 6/134 (4%), Positives = 36/134 (26%), Gaps = 29/134 (21%)

Query: 2   DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGW-NLLHFAMASSN 60
            +  +        ++ + +    GH+ ++  ++          +   +   +  A+ + +
Sbjct: 150 SEIPSTFDLAI-LLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKD 207

Query: 61  L--------------FQLHSRLRNRS---VEMLI------NKQDVNGNTPLHVLAAVLQK 97
           +                    +        +M+I             +  +       + 
Sbjct: 208 IEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN---KL 264

Query: 98  EKTAVEEGEIKELK 111
           ++   +  E++ + 
Sbjct: 265 DEIISKNKELRLMY 278

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
            +D   T L+LAA      ++ ++I++  D     D+ G + LH+A A+ N         
Sbjct: 121 MHDGT-TPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWA-AAVN--------N 169

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
             +  +L+      + Q+    TPL  LAA
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLF-LAA 198

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 17/87 (19%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D+  K +AL  AA   ++     ++    +   Q + R    L  A A    ++      
Sbjct: 154 DDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLA-AREGSYET----- 205

Query: 70  NRSVEMLI------NKQDVNGNTPLHV 90
               ++L+      +  D     P  +
Sbjct: 206 ---AKVLLDHFANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 24/103 (23%), Positives = 32/103 (31%), Gaps = 30/103 (29%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIIST--CPDCCK-----------QVDERGWNLLHFAM 56
            D   T L++A+  G              P               Q D  G   LH A 
Sbjct: 7  GPDGF-TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA- 64

Query: 57 ASSNLFQLHSRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
          A  +        R+ + + L+      N QD  G TPLH  A 
Sbjct: 65 ARYS--------RSDAAKRLLEASADANIQDNMGRTPLH-AAV 98

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 22/98 (22%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDER---GWNLLHFAMASSNLFQLHS 66
           DN  + T L  A       V   +I    +    +D R   G   L  A A   +  +  
Sbjct: 87  DNMGR-TPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILA-ARLAVEGM-- 139

Query: 67  RLRNRSVEMLI------NKQDVNGNTPLHVLAAVLQKE 98
                 +E LI      N  D  G + LH  AAV   +
Sbjct: 140 ------LEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 14/88 (15%), Positives = 20/88 (22%), Gaps = 19/88 (21%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
            +     L+    GH            D    V          A A         +   
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTA-ARKA----DEQA-- 59

Query: 71 RSVEML-----INKQDVNGNTPLHVLAA 93
            +  L     ++  D NG T L    A
Sbjct: 60 --LSQLLEDRDVDAVDENGRTALL-FVA 84

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D + + TALL  AG G  + V  +     D   +    G   LH A A          + 
Sbjct: 73  DENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA-AGYV----RPEV- 125

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAAVLQKE 98
              VE L+        +D  G T L +   +L+  
Sbjct: 126 ---VEALVELGADIEVEDERGLTALELAREILKTT 157

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 19/90 (21%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
             +  T    AA +   + +++++          DE G   L F  A            +
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDRDVDAV--DENGRTALLFV-AGLG--------SD 89

Query: 71  RSVEMLI------NKQDVN-GNTPLHVLAA 93
           + V +L       + +D+  G T LH +AA
Sbjct: 90  KCVRLLAEAGADLDHRDMRGGLTALH-MAA 118

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 28/117 (23%)

Query: 9   SDNDQKMTALLLAAGRGHIRVVNEIIS------------TCPDCCKQVDERGWNLLHFAM 56
           S+  +  TAL +A    ++ +V  +++                    +   G + L FA 
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA- 128

Query: 57  ASSNLFQLHSRLRNRSVEMLI------NKQDVNGNTPLHVLAAVLQKEKTAVEEGEI 107
           A               V +LI        QD  GNT LH +  +   +  A +   +
Sbjct: 129 ACVG--------SEEIVRLLIEHGADIRAQDSLGNTVLH-ILILQPNKTFACQMYNL 176

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 23/90 (25%)

Query: 16 TALLLAAGRGHIRVVNEI-ISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE 74
          + LLLAA    ++ ++++      +   Q    G   LH A    NL          +  
Sbjct: 5  SPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNL---------EAAM 54

Query: 75 MLI-----------NKQDVNGNTPLHVLAA 93
          +L+             +   G T LH +A 
Sbjct: 55 VLMEAAPELVFEPMTSELYEGQTALH-IAV 83

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 12/109 (11%)

Query: 3   KSAACISDNDQKMTALLLAAGRGHIRVVNEIIS------------TCPDCCKQVDERGWN 50
            +A C  +  Q  +AL +A  +  ++ V  ++                         G  
Sbjct: 79  VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138

Query: 51  LLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEK 99
            L  A  +     +   L N      +   D  GNT LH L  +     
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP 187

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 16/94 (17%)

Query: 15  MTALLLAAGRGHIRVVNEIISTCPDCCK--QVDERGWNLLHFAMASSNLFQ----LHSRL 68
              L LAA      VV  ++            D  G  +LH  +  ++       L   +
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196

Query: 69  RNRSVEM---------LINKQDVNGNTPLHVLAA 93
            +  ++M         L    +  G TPL  LAA
Sbjct: 197 YDGLLQMGARLCPTVQLEEISNHQGLTPLK-LAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 5   AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQL 64
              I+DN  + +AL++    G +++   +  T     +  + +G   L  A A       
Sbjct: 179 LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLA-AKEG---- 232

Query: 65  HSRLRNRSVEMLINKQDVNGNTPLH 89
              +       ++ + + +G    H
Sbjct: 233 KIEI----FRHILQR-EFSGAAAHH 252

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 14/88 (15%), Positives = 21/88 (23%), Gaps = 19/88 (21%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
            +     L+    GH            D    V          A A             
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTA-ARKA--------DE 58

Query: 71 RSVEML-----INKQDVNGNTPLHVLAA 93
          +++  L     ++  D NG T L    A
Sbjct: 59 QALSQLLEDRDVDAVDENGRTALL-FVA 85

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D + + TALL  AG G  + V  +     D   +    G   LH A A          + 
Sbjct: 74  DENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA-AGYV----RPEV- 126

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAAVLQKE 98
              VE L+        +D  G T L +   +L+  
Sbjct: 127 ---VEALVELGADIEVEDERGLTALELAREILKTT 158

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 20/93 (21%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDER---GWNLLHFAMASSNLFQLHS 66
            D   + L LA       +  E+I         ++ +       LH A   +N      
Sbjct: 5  TEDGD-SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA-VITN----QP 58

Query: 67 RLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
           +     E L+        +D  GNTPLH LA 
Sbjct: 59 EI----AEALLGAGCDPELRDFRGNTPLH-LAC 86

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQ----LHS 66
           N+ + T L LA       +   ++    D   + D RG   LH A            L  
Sbjct: 42  NNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLA-CEQGCLASVGVLTQ 99

Query: 67  RLRNRSVEMLINKQDVNGNTPLHVLAA 93
                 +  ++   + NG+T LH LA+
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLH-LAS 125

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 40/129 (31%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQV-----DERGWNLLHFAMASSN---- 60
           D     T L LA  +G +  V  +  +C            +  G   LH A +       
Sbjct: 75  DFRGN-TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA-SIHGYLGI 132

Query: 61  ---LFQ----------------LH--SRLRNRS-VEMLI------NKQDVNGNTPLHVLA 92
              L                  LH    L+N   V +L+      N+    G +P   L 
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ-LT 191

Query: 93  AVLQKEKTA 101
                 +  
Sbjct: 192 WGRPSTRIQ 200

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 13/68 (19%)

Query: 42  KQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLI------NKQDVNGNTPLHVLAAVL 95
           +Q+ E G + LH A            L    +  +       N Q+    TPLH+  AV+
Sbjct: 2   QQLTEDGDSFLHLA-IIHE----EKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL--AVI 54

Query: 96  QKEKTAVE 103
             +    E
Sbjct: 55  TNQPEIAE 62

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 3e-06
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 17/84 (20%)

Query: 16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM 75
             + A   G +  V + ++   D  +   E G   LH+A A          +    +E 
Sbjct: 9  KEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYA-ADCG----QLEI----LEF 58

Query: 76 LI------NKQDVNGNTPLHVLAA 93
          L+      N  D +  TPL   A 
Sbjct: 59 LLLKGADINAPDKHHITPLL-SAV 81

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.5 bits (96), Expect = 7e-05
 Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 17/87 (19%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
                   L  AA  G + ++  ++    D     D+     L  A              
Sbjct: 37  LEG-GRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSA-VYEGHVSC----- 88

Query: 70  NRSVEMLI------NKQDVNGNTPLHV 90
              V++L+        +  +G T    
Sbjct: 89  ---VKLLLSKGADKTVKGPDGLTAFEA 112

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 17/85 (20%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE 74
          +  LL AA  G + VV + +    D   Q +E G   LH A+  +N            V+
Sbjct: 22 LVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYS---------IVD 71

Query: 75 MLI------NKQDVNGNTPLHVLAA 93
           LI      N  D +G TPLH  AA
Sbjct: 72 FLITAGANVNSPDSHGWTPLH-CAA 95

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           N++ +TAL  A    +  +V+ +I+   +     D  GW  LH A AS N   +      
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVNSP-DSHGWTPLHCA-ASCNDTVI------ 102

Query: 71  RSVEMLI------NKQDVN-GNTPLHVLAAVLQK 97
                L+          ++ G T         ++
Sbjct: 103 --CMALVQHGAAIFATTLSDGATAFE-KCDPYRE 133

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 17/94 (18%)

Query: 6   ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLH 65
           A  + +    + L LAA  GH      ++        +  +     LH A AS       
Sbjct: 26  APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMA-ASEG----- 78

Query: 66  SRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                  VE+L+      N +D+   T LH  A 
Sbjct: 79  ---HANIVEVLLKHGADVNAKDMLKMTALH-WAT 108

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 18/84 (21%)

Query: 16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM 75
            LL AA  G    V  +++         D  G + LH A A              + E+
Sbjct: 4  KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLA-AQYG--------HFSTTEV 52

Query: 76 LI------NKQDVNGNTPLHVLAA 93
          L+      + +     TPLH +AA
Sbjct: 53 LLRAGVSRDARTKVDRTPLH-MAA 75

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.8 bits (97), Expect = 9e-05
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
               + T L +AA  GH  +V  ++    D     D      LH+A    N         
Sbjct: 64  TKVDR-TPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWA-TEHN--------H 112

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              VE+LI      + Q     T    ++ 
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFD-ISI 141

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 8  ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
                    LL AA  G    V  +++   D   + D  GW  LH A A +     H  
Sbjct: 8  HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLA-AFNG----HLE 61

Query: 68 LRNRSVEMLI------NKQDVNGNTPLHVLAA 93
          +    VE+L+      N  D  G TPL  LAA
Sbjct: 62 I----VEVLLKNGADVNAVDHAGMTPLR-LAA 88

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D     T L LAA  GH+ +V  ++    D     D  G   L  A A     ++     
Sbjct: 44  DASGW-TPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLA-ALFGHLEI----- 95

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              VE+L+      N  D+ G+TPLH LAA
Sbjct: 96  ---VEVLLKNGADVNANDMEGHTPLH-LAA 121

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.6 bits (99), Expect = 5e-05
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D+    T L LAA  GH+ +V  ++    D     D  G   LH A A       H  + 
Sbjct: 77  DHAGM-TPLRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLA-AMFG----HLEI- 128

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              VE+L+      N QD  G T    ++ 
Sbjct: 129 ---VEVLLKNGADVNAQDKFGKTAFD-ISI 154

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.6 bits (109), Expect = 5e-06
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 16/93 (17%)

Query: 6   ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLH 65
           A +       + +  AA RGH+  VN +I+   +   +        L+ A   +      
Sbjct: 149 ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLA-CENQ----- 201

Query: 66  SRLRNRSVEMLINK-----QDVNGNTPLHVLAA 93
              +   V+ L+       Q    ++PLH    
Sbjct: 202 ---QRACVKKLLESGADVNQGKGQDSPLH-AVV 230

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.2 bits (108), Expect = 8e-06
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 17/96 (17%)

Query: 4   SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQ 63
           S   + D     + +  AA  GH   +  +IS        +     + LH A        
Sbjct: 49  SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEA-CLGG--- 103

Query: 64  LHSRLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
            H       V++L+      N    + +TPL   A 
Sbjct: 104 -HLSC----VKILLKHGAQVNGVTADWHTPLF-NAC 133

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 19/90 (21%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
             D   T L  A   G    VN ++        Q +    + +H A A       H    
Sbjct: 122 TAD-WHTPLFNACVSGSWDCVNLLLQHGAS--VQPESDLASPIHEA-ARRG----HVEC- 172

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              V  LI      + +  +  TPL++ A 
Sbjct: 173 ---VNSLIAYGGNIDHKISHLGTPLYL-AC 198

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 21/94 (22%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPD--CCKQVDERGWNLLHFAMASSNLFQLHSR 67
           D D     L  +       + + ++S   +       D+ GW   H A  S    ++   
Sbjct: 33  DQD-GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA-CSVGNLEV--- 87

Query: 68  LRNRSVEMLI--------NKQDVNGNTPLHVLAA 93
                V+ L         NK    G T LH LA 
Sbjct: 88  -----VKSLYDRPLKPDLNKITNQGVTCLH-LAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.7 bits (107), Expect = 6e-06
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 18/90 (20%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
            +Q +T L LA G+    V   +I        + D+     LH A AS    +L      
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRA-ASVGSLKL------ 155

Query: 71  RSVEMLI-------NKQDVNGNTPLHVLAA 93
             +E+L        N QD  G TPL   A 
Sbjct: 156 --IELLCGLGKSAVNWQDKQGWTPLF-HAL 182

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 17/88 (19%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D   +   L  AA  G ++++  +           D++GW  L  A  +           
Sbjct: 137 DKFNQ-IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-LAEG--------H 186

Query: 70  NRSVEMLI-------NKQDVNGNTPLHV 90
             +  +L+       +  D  G     V
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 19/88 (21%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE 74
             L  A        V E++ + P    Q D+ G   LH++  S           +    
Sbjct: 3  NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQ--------AHEITS 53

Query: 75 MLI---------NKQDVNGNTPLHVLAA 93
           L+         +  D +G TP H +A 
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFH-IAC 80

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 18/90 (20%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
            + K + L  AA  GH+ + + ++    +      E     L  A  +++L        
Sbjct: 8  HQN-KRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHL-------- 57

Query: 70 NRSVEMLI------NKQDVNGNTPLHVLAA 93
            +V+ LI      + +D  G+T LH LAA
Sbjct: 58 -EAVKYLIKAGALVDPKDAEGSTCLH-LAA 85

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 19/91 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
             DQ  T L+ AA   H+  V  +I        + D  G   LH A    +         
Sbjct: 41  SEDQ-RTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHY-------- 90

Query: 70  NRSVEMLI-------NKQDVNGNTPLHVLAA 93
              V+ L+       N QD  G TP+   A 
Sbjct: 91  -EVVQYLLSNGQMDVNCQDDGGWTPMI-WAT 119

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 17/89 (19%)

Query: 8   ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
           I DN+ +   L  AA  G + +   +++   D     +  G + LH A A  N +     
Sbjct: 139 IRDNE-ENICLHWAAFSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIA-ARENRYDC--- 192

Query: 68  LRNRSVEMLI------NKQDVNGNTPLHV 90
                V + +        ++  G TPL  
Sbjct: 193 -----VVLFLSRDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D+    T ++ A    H+ +V  ++S   D   + D      LH+A A S        + 
Sbjct: 108 DDGGW-TPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWA-AFSG----CVDI- 159

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
               E+L+      +  +++G++PLH +AA
Sbjct: 160 ---AEILLAAKCDLHAVNIHGDSPLH-IAA 185

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.5 bits (104), Expect = 5e-06
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 21/87 (24%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRS-- 72
           T L LAA  GH+ VV  ++    D   + D+ G   LH  +A+ N              
Sbjct: 3  RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLH--LAARN---------GHLEV 50

Query: 73 VEMLI------NKQDVNGNTPLHVLAA 93
          V++L+      N +D NG TPLH LAA
Sbjct: 51 VKLLLEAGADVNAKDKNGRTPLH-LAA 76

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.6 bits (99), Expect = 3e-05
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D + + T L LAA  GH+ VV  ++    D   + D+ G   LH A A +   ++     
Sbjct: 32  DKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLA-ARNGHLEV----- 83

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              V++L+      N +D NG TPLH LAA
Sbjct: 84  ---VKLLLEAGADVNAKDKNGRTPLH-LAA 109

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.6 bits (104), Expect = 7e-06
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 17/89 (19%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
          N +  T L +A+ +G I  V  ++    D   + D  GW  LH A  +      H ++  
Sbjct: 7  NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEA-CNHG----HLKV-- 58

Query: 71 RSVEMLI------NKQDVNGNTPLHVLAA 93
            VE+L+      N      ++PLH  AA
Sbjct: 59 --VELLLQHKALVNTTGYQNDSPLH-DAA 84

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.5 bits (96), Expect = 7e-05
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 17/87 (19%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D+    T L  A   GH++VV  ++            +  + LH A A +    +     
Sbjct: 40  DHA-GWTPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLHDA-AKNGHVDI----- 91

Query: 70  NRSVEMLI------NKQDVNGNTPLHV 90
              V++L+      N  ++ G  P+  
Sbjct: 92  ---VKLLLSYGASRNAVNIFGLRPVDY 115

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.5 bits (104), Expect = 9e-06
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 19/91 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D       +  AA  G +  +  ++    D   + D  G   LH A A       H R+ 
Sbjct: 67  DRT-GFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLA-AKEG----HLRV- 118

Query: 70  NRSVEMLI-------NKQDVNGNTPLHVLAA 93
              VE L+         ++  G+T    LA 
Sbjct: 119 ---VEFLVKHTASNVGHRNHKGDTACD-LAR 145

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 20/92 (21%)

Query: 8  ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
          +++       L  AA RG +  +  ++    +   Q +  G   L       N       
Sbjct: 1  MAEPWG--NELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVM-KLGNP------ 50

Query: 68 LRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                  L+      + +D  G   +H  AA
Sbjct: 51 ---EIARRLLLRGANPDLKDRTGFAVIH-DAA 78

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 17/89 (19%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           +    T L++A   G    +++++        + D  G   L +A   +N        R 
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWA-VKNN--------RL 81

Query: 71  RSVEMLI------NKQDVNGNTPLHVLAA 93
              E L+      N +D +G TPL   + 
Sbjct: 82  GIAEKLLSKGSNVNTKDFSGKTPLM-WSI 109

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.6 bits (99), Expect = 7e-05
 Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 24/90 (26%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
          D + +     +   +   + ++ + +         D      L  A     +        
Sbjct: 5  DKNGE-IVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVA-CMLGMENA----- 50

Query: 70 NRSVEMLI------NKQDVNGNTPLHVLAA 93
             ++ L+        +D+ G+T L   A 
Sbjct: 51 ---IDKLVENFDKLEDKDIEGSTALI-WAV 76

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.2 bits (98), Expect = 9e-05
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 24/93 (25%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDER---GWNLLHFAMASSNLFQLHS 66
           D   K T L+ +   G+  +   ++    +    V++R   G   L  A +         
Sbjct: 98  DFSGK-TPLMWSIIFGYSEMSYFLLEHGAN----VNDRNLEGETPLIVA-SKYG------ 145

Query: 67  RLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
             R+  V+ L+      + +D+ G T     A 
Sbjct: 146 --RSEIVKKLLELGADISARDLTGLTAEA-SAR 175

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.6 bits (99), Expect = 1e-05
 Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 17/85 (20%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE 74
           T L LAA  GH+ VV  ++    D     D+ G   LH A A +     H  +    V+
Sbjct: 3  RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLA-ARNG----HLEV----VK 52

Query: 75 MLI------NKQDVNGNTPLHVLAA 93
          +L+      N +D NG TPLH LAA
Sbjct: 53 LLLEAGADVNAKDKNGRTPLH-LAA 76

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 17/87 (19%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D+  K +AL  AA   ++     ++    +   Q + R    L  A A            
Sbjct: 122 DDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLA-AREG--------S 170

Query: 70  NRSVEMLI------NKQDVNGNTPLHV 90
             + ++L+      +  D     P  +
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 20/90 (22%), Positives = 25/90 (27%), Gaps = 17/90 (18%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           DN  + T L  A       V   +I             G   L  A   +          
Sbjct: 55  DNMGR-TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE-------- 105

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              +E LI      N  D  G + LH  AA
Sbjct: 106 -GMLEDLINSHADVNAVDDLGKSALH-WAA 133

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.0 bits (100), Expect = 6e-05
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 18/90 (20%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           +    TAL LAA          ++    D   Q D  G   LH A  S++          
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAA-VSAD--------AQ 71

Query: 71  RSVEMLI-------NKQDVNGNTPLHVLAA 93
              ++LI       + +  +G TPL  LAA
Sbjct: 72  GVFQILIRNRATDLDARMHDGTTPLI-LAA 100

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 27/95 (28%)

Query: 10 DNDQKMTALLLAAGRGHIRVVNEIIST--CPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
            +     L  AA RG +  V  ++     P+     +  G   +   M           
Sbjct: 8  SMEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMM----------- 53

Query: 68 LRNRS--VEMLI------NKQDVNGNT-PLHVLAA 93
              +   E+L+      N  D    T P+H  AA
Sbjct: 54 -MGSARVAELLLLHGAEPNCADPATLTRPVH-DAA 86

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 23/92 (25%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIIST--CPDCCKQVDERGWNL-LHFAMASSNLFQLHSR 67
           N      + +    G  RV   ++     P+C    D       +H A A          
Sbjct: 42  NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA---DPATLTRPVHDA-AREG----FLD 92

Query: 68  LRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                + +L       + +D  G  P+  LA 
Sbjct: 93  T----LVVLHRAGARLDVRDAWGRLPVD-LAE 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 4e-05
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 18/90 (20%)

Query: 10  DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR 69
           D     T L LA   GH+ +V  ++    D     D  G+  LH A A            
Sbjct: 44  DEYGL-TPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLA-AFIG--------H 92

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
               E+L+      N QD  G T    ++ 
Sbjct: 93  LEIAEVLLKHGADVNAQDKFGKTAFD-ISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 4e-05
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 17/84 (20%)

Query: 16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM 75
            LL AA  G    V  +++   D   + DE G   L+ A  +              VE+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLA-TAHG--------HLEIVEV 65

Query: 76 LI------NKQDVNGNTPLHVLAA 93
          L+      N  D  G TPLH LAA
Sbjct: 66 LLKNGADVNAVDAIGFTPLH-LAA 88

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 20/79 (25%)

Query: 21 AAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLI--- 77
           +   H    + ++         +       L  A A +             V +L+   
Sbjct: 1  GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEA-ARAG----QDDE----VRILMANG 47

Query: 78 ---NKQDVNGNTPLHVLAA 93
               +D NG+TPLH LAA
Sbjct: 48 ADVAAKDKNGSTPLH-LAA 65

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 23/92 (25%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
                 L  AA RG +  V +++    D    ++  G   +   M              
Sbjct: 9  GGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMM------------MG 55

Query: 71 RS--VEMLI------NKQDVNGNT-PLHVLAA 93
           +   E+L+      N  D    T P+H  AA
Sbjct: 56 SAQVAELLLLHGAEPNCADPATLTRPVH-DAA 86

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 19/90 (21%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGW-NLLHFAMASSNLFQLHSRLR 69
           N      + +    G  +V   ++    +     D       +H A A            
Sbjct: 42  NRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCA-DPATLTRPVHDA-AREG----FLDT- 93

Query: 70  NRSVEMLI------NKQDVNGNTPLHVLAA 93
              + +L       +  D  G  P+  LA 
Sbjct: 94  ---LVVLHRAGARLDVCDAWGRLPVD-LAE 119

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 21/93 (22%)

Query: 7  CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHS 66
          C+S+    +    LA       +   I++      +  D+     LH+A ++ +      
Sbjct: 4  CVSN----IMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHT----- 53

Query: 67 RLRNRSVEMLI------NKQDVNGNTPLHVLAA 93
                VE L+      N +D  G +PLH+ AA
Sbjct: 54 ----EIVEFLLQLGVPVNDKDDAGWSPLHI-AA 81

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 12/89 (13%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPD-CCKQVDERGWNLLHFAMASSN-----LFQL 64
             +   A  LAA  GH+ V+N +    P      +    ++      A+ N     L +L
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL--AAENGHLHVLNRL 182

Query: 65  HSRLRNRSVEMLINKQDVNGNTPLHVLAA 93
                  +  M+               A 
Sbjct: 183 CELAPTEATAMI----QAENYYAFRWAAV 207

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 16/94 (17%)

Query: 5   AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQL 64
           A  ++   +   A  L+   G   +V           K    +G+ +L   +  ++   L
Sbjct: 245 ARHVNRLKEMHDAFKLSNPDGVFDLVT----------KSECLQGFYMLRNLIRRNDEVLL 294

Query: 65  HSRLRNRSVEML-----INKQDVNGNTPLHVLAA 93
                  S+  +           + N  L  LA 
Sbjct: 295 DDIRFLLSIPGIKALAPTATIPGDANELLR-LAL 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.72
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.72
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.72
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.72
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.71
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.71
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.71
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.71
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.71
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.7
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.7
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.7
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.7
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.7
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.7
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.69
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.69
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.69
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.69
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.69
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.68
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.68
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.68
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.68
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.68
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.67
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.67
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.67
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.66
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.66
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.66
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.66
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.66
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.66
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.66
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.66
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.66
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.66
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.65
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.65
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.65
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.65
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.65
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.65
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.64
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.64
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.64
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.64
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.64
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.64
2rfa_A	232	Transient receptor potential cation channel subfa	99.64
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.64
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.63
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.63
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.63
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.63
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.63
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.63
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.63
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.62
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.62
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.62
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.62
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.61
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.61
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.61
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.61
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.61
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.61
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.61
2etb_A	256	Transient receptor potential cation channel subfam	99.61
2rfa_A	232	Transient receptor potential cation channel subfa	99.61
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.6
2etb_A	256	Transient receptor potential cation channel subfam	99.6
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.6
2pnn_A	273	Transient receptor potential cation channel subfa	99.6
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.59
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.59
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.59
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.58
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.58
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.58
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.58
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.58
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.58
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.57
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.57
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.57
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.56
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.56
2pnn_A	273	Transient receptor potential cation channel subfa	99.54
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.53
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.53
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.53
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.53
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.52
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.52
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.51
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.51
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.49
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.48
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.44
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.42
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.4
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.39
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.33
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.32
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.32
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.2

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.79  E-value=2e-19  Score=143.10  Aligned_cols=128  Identities=26%  Similarity=0.237  Sum_probs=89.8

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      +|.+|+ +|+||||+|+..|+.++++.|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|+++|.+|.+|+
T Consensus        30 vn~~d~-~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~--~~~v~~Ll-~~gadvn~~d~~G~  104 (169)
T 4gpm_A           30 VNASDS-DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH--KEVVKLLI-SKGADVNAKDSDGR  104 (169)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             CCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC--HHHHHHHH-HCcCCCCCCCCCCC
Confidence            567788 8899999999999999999999888887 7888889999999999998  88888888 67888999999999


Q ss_pred             chhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccC
Q 042220           86 TPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWG  138 (255)
Q Consensus        86 TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~  138 (255)
                      ||||+|++.++.+      +...+.....+.+++++..|+.-........|-.-|+..+
T Consensus       105 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            9999998887665      1111111122334555555554444444444444666654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=2.8e-19  Score=127.47  Aligned_cols=81  Identities=31%  Similarity=0.373  Sum_probs=75.3

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      +|+||||+|++.|+.+++++|++.++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~--~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGH--LEVVKLLL-EAGADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCccCCCCCCHHHHHH
Confidence            4899999999999999999999999998 8899999999999999999  99999999 789999999999999999999


Q ss_pred             Hhhhh
Q 042220           93 AVLQK   97 (255)
Q Consensus        93 ~~~~~   97 (255)
                      +.++.
T Consensus        77 ~~~~~   81 (93)
T 1n0q_A           77 RNGHL   81 (93)
T ss_dssp             HTTCH
T ss_pred             HcCCH
Confidence            98554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.78  E-value=1.7e-19  Score=143.61  Aligned_cols=87  Identities=29%  Similarity=0.307  Sum_probs=71.2

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|+||||+|+++|+.++++.|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+
T Consensus        63 ~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~--~~~v~~Ll-~~gad~~~~d~~G~  137 (169)
T 4gpm_A           63 VNAKDS-DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH--KEVVKLLI-SKGADVNTSDSDGR  137 (169)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             hhhhcc-CCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCccccCCCCC
Confidence            466777 8888888888888888888888888887 7788888888888888888  88888888 67888888888888


Q ss_pred             chhHHHHHhhhh
Q 042220           86 TPLHVLAAVLQK   97 (255)
Q Consensus        86 TpLh~A~~~~~~   97 (255)
                      ||||+|++.++.
T Consensus       138 TpL~~A~~~g~~  149 (169)
T 4gpm_A          138 TPLDLAREHGNE  149 (169)
T ss_dssp             CHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCH
Confidence            888888887554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=5.2e-18  Score=124.88  Aligned_cols=90  Identities=19%  Similarity=0.131  Sum_probs=77.7

Q ss_pred             CCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            3 KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         3 ~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      |...+..|. +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+  .+++++|+ +.|++++.+|.
T Consensus        14 ~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~--~~~v~~Ll-~~ga~~~~~d~   88 (110)
T 2zgd_A           14 VPRGSHMGS-DLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGH--LEVVKLLL-EAGADVXAQDK   88 (110)
T ss_dssp             --------C-CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCT
T ss_pred             CCcccccCC-ccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCcccccc
Confidence            345566778 9999999999999999999999999988 7889999999999999999  99999999 67999999999


Q ss_pred             CCCchhHHHHHhhhh
Q 042220           83 NGNTPLHVLAAVLQK   97 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~   97 (255)
                      +|+||||+|++.++.
T Consensus        89 ~g~tpl~~A~~~~~~  103 (110)
T 2zgd_A           89 FGKTAFDISIDNGNE  103 (110)
T ss_dssp             TSCCHHHHHHHHTCH
T ss_pred             CCCcHHHHHHHcCCH
Confidence            999999999998654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.72  E-value=6.1e-18  Score=126.53  Aligned_cols=81  Identities=19%  Similarity=0.116  Sum_probs=49.1

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      .|.||||+|++.|+.++++.|++.++++ +.+|.+|+||||+|+..++  .+++++|+ +.|.+++.+|.+|+||||+|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQ--LEILEFLL-LKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTC--HHHHHHHH-TTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCC--HHHHHHHH-HcCCCCCcCCCCCCCHHHHHH
Confidence            4556666666666666666666666555 5556666666666666666  66666665 455666666666666666666


Q ss_pred             Hhhhh
Q 042220           93 AVLQK   97 (255)
Q Consensus        93 ~~~~~   97 (255)
                      ..++.
T Consensus        82 ~~~~~   86 (123)
T 3aaa_C           82 YEGHV   86 (123)
T ss_dssp             HHTCH
T ss_pred             HcCCH
Confidence            65443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.72  E-value=1.1e-17  Score=127.42  Aligned_cols=81  Identities=26%  Similarity=0.191  Sum_probs=47.5

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      .|.||||+|++.|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.|.+++.+|.+|+||||+|+
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGH--LEIVEVLL-KNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTTCCCHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCcCCCCCCCHHHHHH
Confidence            4555666666666666666666655555 4555556666666666666  56666555 445556666666666666666


Q ss_pred             Hhhhh
Q 042220           93 AVLQK   97 (255)
Q Consensus        93 ~~~~~   97 (255)
                      +.++.
T Consensus        89 ~~~~~   93 (136)
T 2jab_A           89 FIGHL   93 (136)
T ss_dssp             HHTCH
T ss_pred             HcCCH
Confidence            55443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.72  E-value=4e-17  Score=124.21  Aligned_cols=84  Identities=24%  Similarity=0.300  Sum_probs=78.8

Q ss_pred             eecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCch
Q 042220            8 ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTP   87 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~Tp   87 (255)
                      .+|+ +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..++  .+++++|+ +.|.+++.+|.+|+||
T Consensus         5 ~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~~~~Ll-~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            5 FTNH-RGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGH--LKVVELLL-QHKALVNTTGYQNDSP   79 (137)
T ss_dssp             CCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCGGGCCH
T ss_pred             CcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCcccCcCCCCCCH
Confidence            4677 9999999999999999999999999998 8899999999999999999  99999999 7899999999999999


Q ss_pred             hHHHHHhhh
Q 042220           88 LHVLAAVLQ   96 (255)
Q Consensus        88 Lh~A~~~~~   96 (255)
                      ||+|++.++
T Consensus        80 L~~A~~~~~   88 (137)
T 3c5r_A           80 LHDAAKNGH   88 (137)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            999999843

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.72  E-value=4.7e-18  Score=134.14  Aligned_cols=90  Identities=21%  Similarity=0.147  Sum_probs=81.6

Q ss_pred             CCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            3 KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         3 ~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      +..++.+|. +|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..++  .+++++|+ +.|.+++.+|.
T Consensus        26 ~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~  100 (172)
T 3v30_A           26 DNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGY--TDIVGLLL-ERDVDINIYDW  100 (172)
T ss_dssp             SGGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-TTTCCTTCCCT
T ss_pred             cccccCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCC--HHHHHHHH-HcCCCCCCCCC
Confidence            345678888 9999999999999999999999999988 7889999999999999999  99999998 78999999999


Q ss_pred             CCCchhHHHHHhhhh
Q 042220           83 NGNTPLHVLAAVLQK   97 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~   97 (255)
                      +|+||||+|++.++.
T Consensus       101 ~g~t~L~~A~~~~~~  115 (172)
T 3v30_A          101 NGGTPLLYAVRGNHV  115 (172)
T ss_dssp             TSCCHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHcCCH
Confidence            999999999988554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.71  E-value=8.1e-17  Score=128.03  Aligned_cols=89  Identities=20%  Similarity=0.178  Sum_probs=80.2

Q ss_pred             CCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            3 KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         3 ~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      +..++.+|. +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|.+++.+|.
T Consensus        29 ~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~d~  103 (179)
T 3f6q_A           29 ENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGH--RDIVQKLL-QYKADINAVNE  103 (179)
T ss_dssp             TSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCT
T ss_pred             cccccccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCccCC
Confidence            445677888 9999999999999999999999999888 7889999999999999999  99999998 78999999999


Q ss_pred             CCCchhHHHHHhhh
Q 042220           83 NGNTPLHVLAAVLQ   96 (255)
Q Consensus        83 ~G~TpLh~A~~~~~   96 (255)
                      +|+||||+|+..++
T Consensus       104 ~g~t~L~~A~~~~~  117 (179)
T 3f6q_A          104 HGNVPLHYACFWGQ  117 (179)
T ss_dssp             TSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCC
Confidence            99999999998844

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.71  E-value=5.8e-18  Score=136.11  Aligned_cols=139  Identities=16%  Similarity=0.085  Sum_probs=99.7

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|+ +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|
T Consensus        27 ~~n~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g  101 (192)
T 2rfm_A           27 LRNYRDS-YNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNR--LGIAEKLL-SKGSNVNTKDFSG  101 (192)
T ss_dssp             HHTCCCT-TCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HHTCCTTCCCTTS
T ss_pred             HHhCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCC--HHHHHHHH-HCCCCCCCCCCCC
Confidence            3567888 9999999999999999999999999887 7889999999999999999  99999998 7789999999999


Q ss_pred             CchhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCcccc
Q 042220           85 NTPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSI  148 (255)
Q Consensus        85 ~TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~  148 (255)
                      +||||+|+..++.+      +...........++++++.|+.-........+-.-|...+..+..+.+|+
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  171 (192)
T 2rfm_A          102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE  171 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            99999999986654      11001011122345555555554433333333334554444334444554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.71  E-value=4.5e-18  Score=129.58  Aligned_cols=87  Identities=17%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC-
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN-   83 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~-   83 (255)
                      .++.+|+ +|+||||+|++.|+.+++++|+++++++ +.+|..|+||||+|+. ++  .+++++|+ +.|.+++.+|.+ 
T Consensus         4 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~--~~~v~~Ll-~~g~~~~~~~~~~   77 (136)
T 1d9s_A            4 GIHMLGG-SSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GS--AQVAELLL-LHGAEPNCADPAT   77 (136)
T ss_dssp             CCSCCCC-CCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SC--HHHHHHHH-HHTCCSSCCBTTT
T ss_pred             CccCCCC-CCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CC--HHHHHHHH-HCCCCCCCcCCCC
Confidence            4577888 9999999999999999999999999988 7899999999999999 99  99999999 789999999999 


Q ss_pred             CCchhHHHHHhhhh
Q 042220           84 GNTPLHVLAAVLQK   97 (255)
Q Consensus        84 G~TpLh~A~~~~~~   97 (255)
                      |+||||+|++.++.
T Consensus        78 g~t~L~~A~~~~~~   91 (136)
T 1d9s_A           78 LTRPVHDAAREGFL   91 (136)
T ss_dssp             TBCHHHHHHHHTCH
T ss_pred             CCCHHHHHHHcCCH
Confidence            99999999998443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.71  E-value=1.1e-17  Score=142.42  Aligned_cols=142  Identities=15%  Similarity=0.080  Sum_probs=107.5

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .+|.+|+ +|+||||+|+..|+.+++++|++.++++ +.++.+|+||+|.|+..++  .++++.|+ +.|+++|.+|.+|
T Consensus        78 dvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~--~~~~~~Ll-~~g~~~n~~d~~g  152 (269)
T 4b93_B           78 GVNVTSQ-DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGH--FQVVKCLL-DSNAKPNKKDLSG  152 (269)
T ss_dssp             CTTCCCT-TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTC--HHHHHHHH-HTTCCSCCCCTTC
T ss_pred             CCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccCh--HHHHHHHH-HCCCCCCCCCCCC
Confidence            3577889 9999999999999999999999999998 7889999999999999999  99999998 7899999999999


Q ss_pred             CchhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccccC
Q 042220           85 NTPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSILIK  151 (255)
Q Consensus        85 ~TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~~~  151 (255)
                      +||||+|++.++.+      +...........++++++.|+.-........|-.-|...+..+.++.||+...
T Consensus       153 ~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          153 NTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             CCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999997765      11111111222345555555544444444444446666665666677888744

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.71  E-value=1.2e-16  Score=125.09  Aligned_cols=86  Identities=26%  Similarity=0.225  Sum_probs=72.1

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      ..+..|. +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|
T Consensus        34 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g  108 (165)
T 3twr_A           34 NCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGH--YEVAELLV-KHGAVVNVADLWK  108 (165)
T ss_dssp             TCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTC
T ss_pred             Ccccccc-CCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcCc--HHHHHHHH-hCCCCCCCcCCCC
Confidence            3445566 7888899988888888888888888887 7788888889999888888  88888888 6788888888888


Q ss_pred             CchhHHHHHhh
Q 042220           85 NTPLHVLAAVL   95 (255)
Q Consensus        85 ~TpLh~A~~~~   95 (255)
                      +||||+|++.+
T Consensus       109 ~t~L~~A~~~~  119 (165)
T 3twr_A          109 FTPLHEAAAKG  119 (165)
T ss_dssp             CCHHHHHHHTT
T ss_pred             CCHHHHHHHcC
Confidence            89988888873

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.70  E-value=8.6e-17  Score=120.18  Aligned_cols=85  Identities=14%  Similarity=0.049  Sum_probs=79.5

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.|++++.+|.+|
T Consensus        32 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~~--~~~v~~Ll-~~ga~~~~~~~~g  106 (123)
T 3aaa_C           32 DVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGH--VSCVKLLL-SKGADKTVKGPDG  106 (123)
T ss_dssp             CTTSCCT-TSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTTS
T ss_pred             CcCccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCcCCCC
Confidence            3567888 9999999999999999999999999998 8899999999999999999  99999999 7799999999999


Q ss_pred             CchhHHHHHh
Q 042220           85 NTPLHVLAAV   94 (255)
Q Consensus        85 ~TpLh~A~~~   94 (255)
                      +||||+|...
T Consensus       107 ~t~l~~A~~~  116 (123)
T 3aaa_C          107 LTAFEATDNQ  116 (123)
T ss_dssp             CCHHHHCCCH
T ss_pred             CCHHHHhCCH
Confidence            9999999665

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.70  E-value=3.9e-17  Score=130.68  Aligned_cols=88  Identities=24%  Similarity=0.243  Sum_probs=71.1

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccc-cCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVD-ERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      .++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+| .+|+||||+|+..|+  .+++++|+ +.|++++.+|.+
T Consensus        68 ~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~~~--~~~v~~Ll-~~ga~~~~~d~~  142 (183)
T 3deo_A           68 DVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVR--PEVVEALV-ELGADIEVEDER  142 (183)
T ss_dssp             CTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHTTC--HHHHHHHH-HHTCCTTCCCTT
T ss_pred             CCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhcCc--HHHHHHHH-HcCCCCcCCCCC
Confidence            3566777 8888888888888888888888888887 5566 778888888888888  88888888 678888888888


Q ss_pred             CCchhHHHHHhhhh
Q 042220           84 GNTPLHVLAAVLQK   97 (255)
Q Consensus        84 G~TpLh~A~~~~~~   97 (255)
                      |+||||+|++.++.
T Consensus       143 g~tpl~~A~~~~~~  156 (183)
T 3deo_A          143 GLTALELAREILKT  156 (183)
T ss_dssp             SCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHhccC
Confidence            88888888887554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.70  E-value=2.1e-17  Score=125.75  Aligned_cols=88  Identities=19%  Similarity=0.139  Sum_probs=81.5

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.|++++.+|.+|
T Consensus        35 ~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~ga~~~~~~~~g  109 (137)
T 3c5r_A           35 DPNVKDH-AGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGH--VDIVKLLL-SYGASRNAVNIFG  109 (137)
T ss_dssp             CSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTS
T ss_pred             CCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCCCCCC
Confidence            3567888 9999999999999999999999999998 8899999999999999999  99999999 7899999999999


Q ss_pred             CchhHHHHHhhhh
Q 042220           85 NTPLHVLAAVLQK   97 (255)
Q Consensus        85 ~TpLh~A~~~~~~   97 (255)
                      +||||+|+..++.
T Consensus       110 ~tpl~~A~~~~~~  122 (137)
T 3c5r_A          110 LRPVDYTDDESMK  122 (137)
T ss_dssp             CCGGGGCCCHHHH
T ss_pred             CCHHHHHhhccHH
Confidence            9999999987543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.70  E-value=1.9e-17  Score=122.23  Aligned_cols=85  Identities=24%  Similarity=0.252  Sum_probs=79.5

Q ss_pred             eecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCch
Q 042220            8 ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTP   87 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~Tp   87 (255)
                      .+|+ +|+||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..++  .+++++|+ +.|.+++.+|.+|+||
T Consensus         4 ~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~--~~~~~~Ll-~~g~~~~~~d~~g~tp   78 (115)
T 2l6b_A            4 WGSK-DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGH--AEIVKLLL-AKGADVNARSKDGNTP   78 (115)
T ss_dssp             CCSC-SSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTC--HHHHHHHT-TTTCCTTCCCTTCCCT
T ss_pred             ccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCc--HHHHHHHH-HcCCCCcccCCCCCCH
Confidence            4678 9999999999999999999999999998 8899999999999999999  99999999 7899999999999999


Q ss_pred             hHHHHHhhhh
Q 042220           88 LHVLAAVLQK   97 (255)
Q Consensus        88 Lh~A~~~~~~   97 (255)
                      ||+|++.++.
T Consensus        79 l~~A~~~~~~   88 (115)
T 2l6b_A           79 EHLAKKNGHH   88 (115)
T ss_dssp             THHHHTTTCH
T ss_pred             HHHHHHCCCH
Confidence            9999998543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.70  E-value=1.2e-17  Score=142.36  Aligned_cols=85  Identities=15%  Similarity=0.122  Sum_probs=57.6

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. +|+||||+|++.|+.++++.|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+
T Consensus       145 ~n~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~--~~~v~~Ll-~~Gad~~~~d~~G~  219 (269)
T 4b93_B          145 PNKKDL-SGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKH--VFVVELLL-LHGASVQVLNKRQR  219 (269)
T ss_dssp             SCCCCT-TCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTC--HHHHHHHH-HTTCCSCCCCTTSC
T ss_pred             CCCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCC--HHHHHHHH-HCCCCCCCcCCCCC
Confidence            345566 6677777777777777777777766666 5666667777777777777  67777666 56667777777777


Q ss_pred             chhHHHHHhh
Q 042220           86 TPLHVLAAVL   95 (255)
Q Consensus        86 TpLh~A~~~~   95 (255)
                      ||||+|++++
T Consensus       220 TpL~~A~~~~  229 (269)
T 4b93_B          220 TAVDCAEQNS  229 (269)
T ss_dssp             CSGGGSCTTC
T ss_pred             CHHHHHHhCC
Confidence            7777766553

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.70  E-value=3.5e-17  Score=126.85  Aligned_cols=85  Identities=19%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchh
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPL   88 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpL   88 (255)
                      +|. .|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|+|||
T Consensus        30 ~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~t~L  104 (153)
T 1awc_B           30 TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH--ANIVEVLL-KHGADVNAKDMLKMTAL  104 (153)
T ss_dssp             CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC--HHHHHHHH-TTTCCTTCCCTTSCCHH
T ss_pred             cCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh--HHHHHHHH-HcCCCCCCCCCCCCCHH
Confidence            466 8999999999999999999999999888 7889999999999999999  99999998 77999999999999999


Q ss_pred             HHHHHhhhhc
Q 042220           89 HVLAAVLQKE   98 (255)
Q Consensus        89 h~A~~~~~~~   98 (255)
                      |+|++.++.+
T Consensus       105 ~~A~~~~~~~  114 (153)
T 1awc_B          105 HWATEHNHQE  114 (153)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHcCCHH
Confidence            9999987655

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.69  E-value=1.2e-17  Score=127.15  Aligned_cols=87  Identities=9%  Similarity=-0.007  Sum_probs=80.8

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccC-CchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDER-GWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      .++.+|+ +|+||||+|+. |+.+++++|+++++++ +.+|.+ |+||||+|+..|+  .+++++|+ +.|++++.+|.+
T Consensus        37 ~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~ga~~~~~d~~  110 (136)
T 1d9s_A           37 DPNALNR-FGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDAAREGF--LDTLVVLH-RAGARLDVCDAW  110 (136)
T ss_dssp             CTTCCCT-TCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHHHHHTC--HHHHHHHH-HTCCCCCCCSSS
T ss_pred             CcCCcCC-CCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCccCCC
Confidence            3567788 99999999999 9999999999999998 889999 9999999999999  99999999 789999999999


Q ss_pred             CCchhHHHHHhhhh
Q 042220           84 GNTPLHVLAAVLQK   97 (255)
Q Consensus        84 G~TpLh~A~~~~~~   97 (255)
                      |+||||+|++.++.
T Consensus       111 g~tpl~~A~~~~~~  124 (136)
T 1d9s_A          111 GRLPVDLAEEQGHR  124 (136)
T ss_dssp             SSCHHHHHHHHTCH
T ss_pred             CCCHHHHHHHcCCH
Confidence            99999999998553

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.69  E-value=4.9e-17  Score=127.65  Aligned_cols=84  Identities=23%  Similarity=0.240  Sum_probs=48.1

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|+
T Consensus        29 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~  103 (167)
T 3v31_A           29 INHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGY--TDIVKMLL-DCGVDVNEYDWNGG  103 (167)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTC--HHHHHHHH-HHTCCTTCCCTTSC
T ss_pred             cCCCCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCC--HHHHHHHH-HCCCCCCcCCCCCC
Confidence            344555 5555555555555555555555555554 4555555555555555555  55555555 45555555555555


Q ss_pred             chhHHHHHh
Q 042220           86 TPLHVLAAV   94 (255)
Q Consensus        86 TpLh~A~~~   94 (255)
                      ||||+|+..
T Consensus       104 t~L~~A~~~  112 (167)
T 3v31_A          104 TPLLYAVHG  112 (167)
T ss_dssp             CHHHHHHHT
T ss_pred             CHHHHHHHc
Confidence            555555555

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.69  E-value=4.2e-17  Score=126.43  Aligned_cols=79  Identities=20%  Similarity=0.142  Sum_probs=53.0

Q ss_pred             CcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHh
Q 042220           15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        15 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~   94 (255)
                      .+|||.|++.|+.+++++|++++++. + .|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|+||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGH--FSTTEVLL-RAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTC--HHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHc
Confidence            46677777777777777777766654 2 46667777777777777  77777666 56666777777777777777766


Q ss_pred             hhhc
Q 042220           95 LQKE   98 (255)
Q Consensus        95 ~~~~   98 (255)
                      ++.+
T Consensus        78 ~~~~   81 (153)
T 1awc_B           78 GHAN   81 (153)
T ss_dssp             TCHH
T ss_pred             ChHH
Confidence            5543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.69  E-value=5.3e-17  Score=125.91  Aligned_cols=88  Identities=16%  Similarity=0.073  Sum_probs=73.7

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|+ +|+||||+ +..|+.+++++|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|
T Consensus        28 ~~~~~~~-~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g  101 (156)
T 1bd8_A           28 HPDALNR-FGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF--LDTLKVLV-EHGADVNVPDGTG  101 (156)
T ss_dssp             CTTCCCT-TSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCSCCCCTTS
T ss_pred             CccccCC-CCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc--HHHHHHHH-HcCCCCCCcCCCC
Confidence            4566777 88888888 8888888888888888887 7788888888888888888  88888888 6788888888888


Q ss_pred             CchhHHHHHhhhhc
Q 042220           85 NTPLHVLAAVLQKE   98 (255)
Q Consensus        85 ~TpLh~A~~~~~~~   98 (255)
                      +||||+|++.++.+
T Consensus       102 ~t~L~~A~~~~~~~  115 (156)
T 1bd8_A          102 ALPIHLAVQEGHTA  115 (156)
T ss_dssp             CCHHHHHHHHTCHH
T ss_pred             CcHHHHHHHhChHH
Confidence            88888888886654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.69  E-value=4.8e-17  Score=133.93  Aligned_cols=91  Identities=29%  Similarity=0.359  Sum_probs=82.9

Q ss_pred             CCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            3 KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         3 ~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      +...+.+|. +|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.
T Consensus        30 ~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~  104 (231)
T 3aji_A           30 KSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGX--DEIVKALL-VKGAHVNAVNQ  104 (231)
T ss_dssp             GGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCT
T ss_pred             hhhhhcCCC-CCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCH--HHHHHHHH-HcCCCCCCCCC
Confidence            455677888 9999999999999999999999999988 7889999999999999999  99999999 78999999999


Q ss_pred             CCCchhHHHHHhhhhc
Q 042220           83 NGNTPLHVLAAVLQKE   98 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~~   98 (255)
                      +|.||||+|++.++.+
T Consensus       105 ~g~t~L~~A~~~~~~~  120 (231)
T 3aji_A          105 NGCTPLHYAASKNRHE  120 (231)
T ss_dssp             TSCCHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHcCCHH
Confidence            9999999999986654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.68  E-value=3.5e-17  Score=131.95  Aligned_cols=90  Identities=16%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|. +|+||||+|++.|+.+++++|+++++++ +.+|..|+||||+|+..|+  .+++++|+++.+.+++.+|.+|
T Consensus        31 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~--~~~~~~Ll~~~~~~~~~~~~~g  106 (201)
T 3hra_A           31 QVDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGR--TEILAYMLKHATPDLNKHNRYG  106 (201)
T ss_dssp             CTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSCCCTTCCCTTS
T ss_pred             CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHHhccCcccccccCCC
Confidence            5677888 9999999999999999999999999998 7899999999999999999  9999999966778999999999


Q ss_pred             CchhHHHHHhhhhc
Q 042220           85 NTPLHVLAAVLQKE   98 (255)
Q Consensus        85 ~TpLh~A~~~~~~~   98 (255)
                      +||||+|++.++.+
T Consensus       107 ~t~L~~A~~~~~~~  120 (201)
T 3hra_A          107 GNALIPAAEKGHID  120 (201)
T ss_dssp             CCSHHHHHHTTCHH
T ss_pred             CcHHHHHHHcCCHH
Confidence            99999999986654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.68  E-value=4.3e-17  Score=126.45  Aligned_cols=85  Identities=16%  Similarity=0.212  Sum_probs=58.2

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +. .+++.+|.+|+
T Consensus        61 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~-~~~~~~~~~g~  134 (156)
T 1bd8_A           61 PNVQDT-SGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGH--TAVVSFLA-AE-SDLHRRDARGL  134 (156)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTC--HHHHHHHH-TT-SCTTCCCTTSC
T ss_pred             CCCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhCh--HHHHHHHH-hc-cCCCCcCCCCC
Confidence            345566 6777777777777777777777776666 5666777777777777777  77777766 33 66677777777


Q ss_pred             chhHHHHHhhh
Q 042220           86 TPLHVLAAVLQ   96 (255)
Q Consensus        86 TpLh~A~~~~~   96 (255)
                      ||||+|++.++
T Consensus       135 t~l~~A~~~~~  145 (156)
T 1bd8_A          135 TPLELALQRGA  145 (156)
T ss_dssp             CHHHHHHHSCC
T ss_pred             CHHHHHHHcCc
Confidence            77777776643

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.68  E-value=6.2e-17  Score=127.66  Aligned_cols=83  Identities=28%  Similarity=0.339  Sum_probs=49.1

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +.+|. +|+||||+|++.|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|+|
T Consensus        41 ~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~~~~Ll-~~g~~~~~~~~~g~t  115 (169)
T 2y1l_E           41 NAEDA-SGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGH--LEIVEVLL-KNGADVNANDMEGHT  115 (169)
T ss_dssp             TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSCC
T ss_pred             CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCCCCCCCC
Confidence            44455 5666666666666666666666655555 4555556666666666666  66666555 455556666666666


Q ss_pred             hhHHHHHh
Q 042220           87 PLHVLAAV   94 (255)
Q Consensus        87 pLh~A~~~   94 (255)
                      |||+|++.
T Consensus       116 ~L~~A~~~  123 (169)
T 2y1l_E          116 PLHLAAMF  123 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            66666655

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.68  E-value=7.3e-17  Score=138.10  Aligned_cols=87  Identities=18%  Similarity=0.249  Sum_probs=80.9

Q ss_pred             ceeecCCCCCcHHHHHHHc---ChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            6 ACISDNDQKMTALLLAAGR---GHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      ++..|+ .|+||||+|+..   |+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.
T Consensus       162 l~~~~~-~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~--~~~v~~Ll-~~gad~~~~d~  236 (278)
T 1dcq_A          162 LANGHE-PDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDN--AECLKLLL-RGKASIEIANE  236 (278)
T ss_dssp             CSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCT
T ss_pred             cccccc-CCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCccC
Confidence            455678 899999999999   8999999999999998 8899999999999999999  99999999 78999999999


Q ss_pred             CCCchhHHHHHhhhh
Q 042220           83 NGNTPLHVLAAVLQK   97 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~   97 (255)
                      +|+||||+|++.++.
T Consensus       237 ~g~tpL~~A~~~~~~  251 (278)
T 1dcq_A          237 SGETPLDIAKRLKHE  251 (278)
T ss_dssp             TSCCHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHcCCH
Confidence            999999999998553

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.68  E-value=7.7e-17  Score=129.49  Aligned_cols=88  Identities=19%  Similarity=0.197  Sum_probs=81.0

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. +|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..++  .+++++|+ +.|.+++.+|.+|+
T Consensus        61 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~  135 (192)
T 2rfm_A           61 LEDKDI-EGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGY--SEMSYFLL-EHGANVNDRNLEGE  135 (192)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCSSCCCTTCC
T ss_pred             cccccc-cCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCC--HHHHHHHH-HCCCCCCCCCCCCC
Confidence            456788 8999999999999999999999999998 7889999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       136 t~L~~A~~~~~~~  148 (192)
T 2rfm_A          136 TPLIVASKYGRSE  148 (192)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCCHH
Confidence            9999999986654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.67  E-value=4.4e-17  Score=124.03  Aligned_cols=88  Identities=23%  Similarity=0.289  Sum_probs=81.9

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.|++++.+|.+|
T Consensus        39 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g  113 (136)
T 2jab_A           39 DVNAKDE-YGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGH--LEIAEVLL-KHGADVNAQDKFG  113 (136)
T ss_dssp             CTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTTS
T ss_pred             CCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCcCcCCCC
Confidence            3567888 9999999999999999999999999998 8899999999999999999  99999999 7899999999999


Q ss_pred             CchhHHHHHhhhh
Q 042220           85 NTPLHVLAAVLQK   97 (255)
Q Consensus        85 ~TpLh~A~~~~~~   97 (255)
                      +||||+|++.++.
T Consensus       114 ~tpl~~A~~~~~~  126 (136)
T 2jab_A          114 KTAFDISIGNGNE  126 (136)
T ss_dssp             CCHHHHHHHTTCH
T ss_pred             CCHHHHHHHCCCH
Confidence            9999999998553

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.67  E-value=1.3e-16  Score=124.42  Aligned_cols=87  Identities=18%  Similarity=0.167  Sum_probs=73.9

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. +|+||||+|+. |+.+++++|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|+
T Consensus        31 ~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~  104 (162)
T 1ihb_A           31 VNAQNG-FGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF--LDTLQTLL-EFQADVNIEDNEGN  104 (162)
T ss_dssp             TTCCCT-TSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             ccccCc-cCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCcCCCCC
Confidence            466777 88899999888 8899999999888887 7788889999999999888  88888888 67888888888899


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       105 t~L~~A~~~~~~~  117 (162)
T 1ihb_A          105 LPLHLAAKEGHLR  117 (162)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHH
Confidence            9999988886654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.67  E-value=2.6e-17  Score=128.27  Aligned_cols=136  Identities=15%  Similarity=0.014  Sum_probs=92.5

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ....++ .|.||||+|++.|+.+++++|+++++++ +.+|..|+||||+|+ .|+  .+++++|+ +.|.+++.+|.+|+
T Consensus         5 ~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~--~~~v~~Ll-~~g~~~~~~d~~g~   78 (156)
T 1bi7_B            5 AGSSME-PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGS--ARVAELLL-LHGAEPNCADPATL   78 (156)
T ss_dssp             -----C-CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTC--HHHHHHHH-TTTCCCCCCCTTTC
T ss_pred             ccCCCc-cchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCC--HHHHHHHH-HcCCCCCCcCCCCC
Confidence            345677 8999999999999999999999999887 788999999999985 888  99999999 77999999999999


Q ss_pred             c-hhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccc
Q 042220           86 T-PLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTS  147 (255)
Q Consensus        86 T-pLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~  147 (255)
                      | |||+|++.++.+      +...........+++.+..|+.-........|...|...+..+..+-+|
T Consensus        79 ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           79 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             cHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            9 999999986654      1100001112345667777776666666666666666654443333333

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.66  E-value=1.6e-16  Score=125.30  Aligned_cols=88  Identities=18%  Similarity=0.172  Sum_probs=82.1

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+
T Consensus        62 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~ga~~~~~~~~g~  136 (172)
T 3v30_A           62 PHILAK-ERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNH--VKCVEALL-ARGADLTTEADSGY  136 (172)
T ss_dssp             TTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             chhhcc-cCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCccccCCCCC
Confidence            566788 9999999999999999999999999998 8899999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       137 t~l~~A~~~~~~~  149 (172)
T 3v30_A          137 TPMDLAVALGYRK  149 (172)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHhCcHH
Confidence            9999999986543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.66  E-value=1.9e-16  Score=117.66  Aligned_cols=80  Identities=31%  Similarity=0.375  Sum_probs=47.3

Q ss_pred             CCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHH
Q 042220           14 KMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAA   93 (255)
Q Consensus        14 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~   93 (255)
                      |+||||+|++.|+.+++++|+++++++ +.+|..|+||||+|+..++  .+++++|+ +.+.+++.+|.+|+||||+|++
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~--~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGH--LEVVKLLL-EAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCc--HHHHHHHH-HcCCCCcccCCCCCcHHHHHHH
Confidence            556666666666666666666665555 4555556666666666666  66666555 4555566666666666666665


Q ss_pred             hhhh
Q 042220           94 VLQK   97 (255)
Q Consensus        94 ~~~~   97 (255)
                      .++.
T Consensus        78 ~~~~   81 (126)
T 1n0r_A           78 NGHL   81 (126)
T ss_dssp             TTCH
T ss_pred             cChH
Confidence            5443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.66  E-value=1.5e-16  Score=133.53  Aligned_cols=140  Identities=19%  Similarity=0.174  Sum_probs=99.7

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      .+..|+ +|+||||+|++.|+.++++.|+++++++ +.+|.+|+||||+|+..|+  .+++++|++....+++.+|.+|.
T Consensus        50 ~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~g~  125 (253)
T 1yyh_A           50 HNQTDR-TGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADA--QGVFQILIRNRATDLDARMHDGT  125 (253)
T ss_dssp             --CCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHHHSTTSCTTCCCTTCC
T ss_pred             ccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCccccCCCCC
Confidence            345678 9999999999999999999999999998 8899999999999999999  99999999433348999999999


Q ss_pred             chhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccc
Q 042220           86 TPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        86 TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      ||||+|++.++.+      +...+.....+.+++.++.|+.-........+-.-|...+..+.++.+|+.
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~  195 (253)
T 1yyh_A          126 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF  195 (253)
T ss_dssp             CHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            9999999987654      111111111223455565555544444444444455554444444455543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.66  E-value=9.2e-17  Score=137.48  Aligned_cols=139  Identities=14%  Similarity=0.024  Sum_probs=102.8

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      ..+.+|. +|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|
T Consensus        51 ~~~~~~~-~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~--~~~v~~Ll-~~ga~~~~~~~~g  125 (285)
T 3d9h_A           51 PLMGDAV-SDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGH--LSCVKILL-KHGAQVNGVTADW  125 (285)
T ss_dssp             TTCSSSC-CSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCSSCCCTTC
T ss_pred             cccCCCc-cCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCc--HHHHHHHH-HCCCCCCCCCCCC
Confidence            3566788 9999999999999999999999999998 8899999999999999999  99999999 7799999999999


Q ss_pred             CchhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccc
Q 042220           85 NTPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        85 ~TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      +||||+|+..++.+      +.... ...++.+++.+..|+.-........+-..|...+..+.++.+|+.
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~  195 (285)
T 3d9h_A          126 HTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY  195 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-SSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHH
T ss_pred             CCHHHHHHHcCHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            99999999987654      00000 001122445555555444444444443355554444444555554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.66  E-value=1.8e-16  Score=135.16  Aligned_cols=87  Identities=24%  Similarity=0.243  Sum_probs=69.8

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +..|. .|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+  .+++++|++..|++++.+|.+|+|
T Consensus       177 ~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~--~~iv~~Ll~~~gad~~~~d~~g~T  252 (276)
T 4hbd_A          177 AKASQ-AGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGH--KEIAGLLLAVPSCDISLTDRDGST  252 (276)
T ss_dssp             CCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHHTSTTCCTTCCCTTSCC
T ss_pred             cccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCC--HHHHHHHHhcCCCCCcCcCCCCCC
Confidence            44566 7888888888888888888888888887 7788888888888888888  888888884378888888888888


Q ss_pred             hhHHHHHhhhh
Q 042220           87 PLHVLAAVLQK   97 (255)
Q Consensus        87 pLh~A~~~~~~   97 (255)
                      |||+|++.++.
T Consensus       253 pL~~A~~~g~~  263 (276)
T 4hbd_A          253 ALMVALDAGQS  263 (276)
T ss_dssp             HHHHHHHHTCH
T ss_pred             HHHHHHHcCCH
Confidence            88888887554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.66  E-value=7.5e-17  Score=136.24  Aligned_cols=89  Identities=17%  Similarity=0.107  Sum_probs=75.5

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCc--ccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDC--CKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      ++.+|+ +|+||||+|++.|+.+++++|++.+++.  .+.+|..|+||||+|+..|+  .+++++|+ +.|++++.+|.+
T Consensus         2 ~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll-~~ga~~~~~~~~   77 (282)
T 1oy3_D            2 FGYVTE-DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE--ASTVEKLY-AAGAGVLVAERG   77 (282)
T ss_dssp             CCCCCT-TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCSSCCCTT
T ss_pred             CCccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCCCCC
Confidence            567788 8999999999999999999999888772  36788889999999999999  99999988 678899999999


Q ss_pred             CCchhHHHHHhhhhc
Q 042220           84 GNTPLHVLAAVLQKE   98 (255)
Q Consensus        84 G~TpLh~A~~~~~~~   98 (255)
                      |+||||+|++.++.+
T Consensus        78 g~tpL~~A~~~~~~~   92 (282)
T 1oy3_D           78 GHTALHLACRVRAHT   92 (282)
T ss_dssp             SCCHHHHHTTTTCHH
T ss_pred             CCCHHHHHHHcCCcc
Confidence            999999998875543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.66  E-value=1.1e-16  Score=125.64  Aligned_cols=82  Identities=12%  Similarity=0.051  Sum_probs=77.2

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      +|.||||.|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|.+++.+|..|+||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQ--IAVVEFLL-QNGADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCC--HHHHHHHH-HcCCCCCCcCCCCCcHHHHHH
Confidence            6899999999999999999999999887 8899999999999999999  99999999 679999999999999999999


Q ss_pred             Hhhhhc
Q 042220           93 AVLQKE   98 (255)
Q Consensus        93 ~~~~~~   98 (255)
                      ..++.+
T Consensus        78 ~~~~~~   83 (167)
T 3v31_A           78 SKGYTD   83 (167)
T ss_dssp             HHTCHH
T ss_pred             HcCCHH
Confidence            987654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.66  E-value=2.1e-16  Score=117.50  Aligned_cols=87  Identities=30%  Similarity=0.360  Sum_probs=80.9

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ .|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..++  .+++++|+ +.|.+++.+|.+|+
T Consensus        28 ~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~--~~~~~~Ll-~~g~~~~~~~~~g~  102 (126)
T 1n0r_A           28 VNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGH--LEVVKLLL-EAGADVNAKDKNGR  102 (126)
T ss_dssp             TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             CCCcCC-CCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcCh--HHHHHHHH-HcCCCCcccCCCCC
Confidence            456788 9999999999999999999999999998 8899999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhh
Q 042220           86 TPLHVLAAVLQK   97 (255)
Q Consensus        86 TpLh~A~~~~~~   97 (255)
                      ||||+|++.++.
T Consensus       103 t~l~~A~~~~~~  114 (126)
T 1n0r_A          103 TPLHLAARNGHL  114 (126)
T ss_dssp             CHHHHHHHTTCH
T ss_pred             CHHHHHHHcCcH
Confidence            999999998543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.66  E-value=4.7e-16  Score=131.33  Aligned_cols=86  Identities=16%  Similarity=0.076  Sum_probs=79.1

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCccccccc-CCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDE-RGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      ++.+|. +|+||||+|++.|+.+++++|+++++++ +.+|. .|+||||+|+..|+  .+++++|+ +.|++++.+|.+|
T Consensus       151 ~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~--~~~v~~Ll-~~gad~~~~d~~g  225 (282)
T 1oy3_D          151 LEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQA--ASVLELLL-KAGADPTARMYGG  225 (282)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTS
T ss_pred             CCCcCC-CCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCC--HHHHHHHH-HcCCCCcccccCC
Confidence            567788 9999999999999999999999999998 66664 59999999999999  99999999 7899999999999


Q ss_pred             CchhHHHHHhhh
Q 042220           85 NTPLHVLAAVLQ   96 (255)
Q Consensus        85 ~TpLh~A~~~~~   96 (255)
                      +||||+|++.++
T Consensus       226 ~tpL~~A~~~~~  237 (282)
T 1oy3_D          226 RTPLGSALLRPN  237 (282)
T ss_dssp             CCHHHHHHTSSC
T ss_pred             CCHHHHHHHcCC
Confidence            999999998843

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.66  E-value=2.3e-16  Score=129.17  Aligned_cols=91  Identities=23%  Similarity=0.221  Sum_probs=79.7

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      +..+..|+ +|+||||+|++.|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|++....+++.+|.+
T Consensus        16 ~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~   91 (223)
T 2f8y_A           16 SLHNQTDR-TGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADA--QGVFQILIRNRATDLDARMHD   91 (223)
T ss_dssp             CTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHHHBTTSCTTCCCTT
T ss_pred             CcccccCC-CCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCcccCCCC
Confidence            33445578 8999999999999999999999999988 7889999999999999999  999999994444489999999


Q ss_pred             CCchhHHHHHhhhhc
Q 042220           84 GNTPLHVLAAVLQKE   98 (255)
Q Consensus        84 G~TpLh~A~~~~~~~   98 (255)
                      |.||||+|++.++.+
T Consensus        92 g~t~L~~A~~~~~~~  106 (223)
T 2f8y_A           92 GTTPLILAARLAVEG  106 (223)
T ss_dssp             CCCHHHHHHHHTCHH
T ss_pred             CCcHHHHHHHhCcHH
Confidence            999999999986654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.65  E-value=2.5e-16  Score=131.92  Aligned_cols=88  Identities=24%  Similarity=0.243  Sum_probs=78.0

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccc-cCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVD-ERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      .++.+|+ +|+||||+|+..|+.++++.|+++++++ +.+| ..|+||||+|+..|+  .+++++|+ +.|++++.+|.+
T Consensus        69 ~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll-~~ga~~~~~d~~  143 (244)
T 3ui2_A           69 DVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVR--PEVVEALV-ELGADIEVEDER  143 (244)
T ss_dssp             CTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTT
T ss_pred             CCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCCCCCC
Confidence            4577888 9999999999999999999999999998 6666 789999999999999  99999998 679999999999


Q ss_pred             CCchhHHHHHhhhh
Q 042220           84 GNTPLHVLAAVLQK   97 (255)
Q Consensus        84 G~TpLh~A~~~~~~   97 (255)
                      |+||||+|++.++.
T Consensus       144 g~t~l~~A~~~~~~  157 (244)
T 3ui2_A          144 GLTALELAREILKT  157 (244)
T ss_dssp             CCCHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHhc
Confidence            99999999987443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.65  E-value=2.9e-16  Score=123.73  Aligned_cols=87  Identities=24%  Similarity=0.223  Sum_probs=81.3

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.|++++.+|.+|+
T Consensus        73 ~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~  147 (169)
T 2y1l_E           73 VNAVDH-AGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGH--LEIVEVLL-KNGADVNAQDKFGK  147 (169)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             CCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCcCCCCC
Confidence            566788 9999999999999999999999999998 8899999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhh
Q 042220           86 TPLHVLAAVLQK   97 (255)
Q Consensus        86 TpLh~A~~~~~~   97 (255)
                      ||||+|++.++.
T Consensus       148 t~l~~A~~~~~~  159 (169)
T 2y1l_E          148 TAFDISIDNGNE  159 (169)
T ss_dssp             CHHHHHHHTTCH
T ss_pred             CHHHHHHHhCCH
Confidence            999999998553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.65  E-value=1.4e-16  Score=133.65  Aligned_cols=140  Identities=16%  Similarity=-0.007  Sum_probs=103.0

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. +|+||||+|+..|+.+++++|+++++...+.+|.+|+||||+|+..++  .+++++|+ +.|.+++.+|.+|+
T Consensus        83 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~d~~g~  158 (253)
T 1yyh_A           83 ANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV--EGMLEDLI-NSHADVNAVDDLGK  158 (253)
T ss_dssp             TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTC--SSHHHHHH-HTTCCTTCBCTTSC
T ss_pred             CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcCh--HHHHHHHH-HcCCCCCCcCCCCC
Confidence            466788 899999999999999999999999884448889999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccc
Q 042220           86 TPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        86 TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      ||||+|++.++.+      +...+.....+.+++.+..|+.-........|..-|...+..+..+.+|+.
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  228 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD  228 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence            9999999987654      111111112233455666555544444444444456665555555556654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.65  E-value=1.6e-16  Score=130.71  Aligned_cols=89  Identities=18%  Similarity=0.186  Sum_probs=82.1

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|+ .|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.|.+++.+|..|
T Consensus        65 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~~~~Ll-~~g~~~~~~~~~g  139 (231)
T 3aji_A           65 PVNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNR--HEIAVMLL-EGGANPDAKDHYD  139 (231)
T ss_dssp             CSCCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTS
T ss_pred             CCCCcCC-CCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCcCCCC
Confidence            3567788 9999999999999999999999999998 7889999999999999999  99999999 7899999999999


Q ss_pred             CchhHHHHHhhhhc
Q 042220           85 NTPLHVLAAVLQKE   98 (255)
Q Consensus        85 ~TpLh~A~~~~~~~   98 (255)
                      +||||+|++.++.+
T Consensus       140 ~t~L~~A~~~~~~~  153 (231)
T 3aji_A          140 ATAMHRAAAKGNLK  153 (231)
T ss_dssp             CCHHHHHHHHTCHH
T ss_pred             CcHHHHHHHcCCHH
Confidence            99999999986654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.65  E-value=1.9e-16  Score=123.97  Aligned_cols=84  Identities=21%  Similarity=0.209  Sum_probs=79.0

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|
T Consensus        67 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~ga~~~~~~~~g  141 (165)
T 3twr_A           67 DVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGK--YEICKLLL-QHGADPTKKNRDG  141 (165)
T ss_dssp             CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTS
T ss_pred             CCCccCC-CCCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCcccCCCC
Confidence            3567788 9999999999999999999999999998 8899999999999999999  99999999 7899999999999


Q ss_pred             CchhHHHHH
Q 042220           85 NTPLHVLAA   93 (255)
Q Consensus        85 ~TpLh~A~~   93 (255)
                      +||||+|.+
T Consensus       142 ~t~l~~a~~  150 (165)
T 3twr_A          142 NTPLDLVKD  150 (165)
T ss_dssp             CCTGGGSCT
T ss_pred             CChhHhHhc
Confidence            999999876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.65  E-value=1.8e-16  Score=131.29  Aligned_cols=140  Identities=14%  Similarity=0.031  Sum_probs=102.5

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhh------hh
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEML------IN   78 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~------i~   78 (255)
                      .++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.+.+      ++
T Consensus        37 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~~~~~~~~~~~~  111 (236)
T 1ikn_D           37 FLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGC--LASVGVLT-QSCTTPHLHSILK  111 (236)
T ss_dssp             CCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTC--HHHHHHHH-HSTTTTSSSCGGG
T ss_pred             HhhccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCC--HHHHHHHH-hcccchhHHHHhh
Confidence            5678888 9999999999999999999999999888 7889999999999999999  99999998 45443      67


Q ss_pred             ccCCCCCchhHHHHHhhhhc------cchhhhHHHHh-hccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccc
Q 042220           79 KQDVNGNTPLHVLAAVLQKE------KTAVEEGEIKE-LKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        79 ~~d~~G~TpLh~A~~~~~~~------~~~~~~~~~~~-~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      .+|.+|.||||+|+..++.+      +.........+ .+++.++.|+.-........|-.-|...+..+..+.+|+.
T Consensus       112 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  189 (236)
T 1ikn_D          112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ  189 (236)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGG
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHH
Confidence            88999999999999987654      11000011111 4556666666554444444454556665555555566765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.64  E-value=1.7e-16  Score=123.65  Aligned_cols=81  Identities=16%  Similarity=0.073  Sum_probs=62.7

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      ...||||.|++.|+.++++.|+++++++ +.+|.+|+||||+|+. |+  .+++++|+ +.|.+++.+|.+|+||||+|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~--~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GN--PEIARRLL-LRGANPDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SC--HHHHHHHH-HTTCCTTCCCTTSCCHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-Cc--HHHHHHHH-HcCCCCCCCCCCCCCHHHHHH
Confidence            4567888888888888888888877776 6777788888888877 77  78888877 567788888888888888888


Q ss_pred             Hhhhhc
Q 042220           93 AVLQKE   98 (255)
Q Consensus        93 ~~~~~~   98 (255)
                      +.++.+
T Consensus        79 ~~~~~~   84 (162)
T 1ihb_A           79 RAGFLD   84 (162)
T ss_dssp             HHTCHH
T ss_pred             HcCCHH
Confidence            776554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.64  E-value=1.6e-16  Score=130.33  Aligned_cols=86  Identities=17%  Similarity=0.130  Sum_probs=45.0

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhC--CCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhh--hhhhccCC
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTC--PDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE--MLINKQDV   82 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~--~~i~~~d~   82 (255)
                      +.+|. +|+||||+|+..|+.+++++|++++  ++....+|..|+||||+|+..|+  .+++++|+ +.+  .+++.+|.
T Consensus        30 ~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~~~~Ll-~~g~~~~~~~~~~  105 (228)
T 2dzn_A           30 LQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN--LEVVKSLY-DRPLKPDLNKITN  105 (228)
T ss_dssp             TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCC--HHHHHHHH-SSSSCCCTTCCCT
T ss_pred             ccCCC-CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCC--HHHHHHHH-hCCCCcccccCCc
Confidence            33455 5555555555555555555555555  33311144555555555555555  55555555 333  45555555


Q ss_pred             CCCchhHHHHHhhh
Q 042220           83 NGNTPLHVLAAVLQ   96 (255)
Q Consensus        83 ~G~TpLh~A~~~~~   96 (255)
                      +|.||||+|++.++
T Consensus       106 ~g~t~L~~A~~~~~  119 (228)
T 2dzn_A          106 QGVTCLHLAVGKKW  119 (228)
T ss_dssp             TCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCC
Confidence            55555555555433

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.64  E-value=2.8e-16  Score=124.88  Aligned_cols=87  Identities=23%  Similarity=0.256  Sum_probs=81.2

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.|++++.+|.+|
T Consensus        64 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~--~~~v~~Ll-~~ga~~~~~~~~g  138 (179)
T 3f6q_A           64 RINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQ--DQVAEDLV-ANGALVSICNKYG  138 (179)
T ss_dssp             CTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCSSBCCTTS
T ss_pred             CCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCcchhccCC
Confidence            3567788 9999999999999999999999999998 8899999999999999999  99999999 7899999999999


Q ss_pred             CchhHHHHHhhh
Q 042220           85 NTPLHVLAAVLQ   96 (255)
Q Consensus        85 ~TpLh~A~~~~~   96 (255)
                      +||||+|++.++
T Consensus       139 ~tpl~~A~~~~~  150 (179)
T 3f6q_A          139 EMPVDKAKAPLR  150 (179)
T ss_dssp             CCGGGGSCHHHH
T ss_pred             CCcHHHHHHHHH
Confidence            999999988744

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.64  E-value=9.4e-17  Score=125.04  Aligned_cols=88  Identities=10%  Similarity=0.089  Sum_probs=81.1

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCch-HHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWN-LLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t-~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      .++.+|. +|+||||+|+ .|+.+++++|+++++++ +.+|..|+| |||+|+..|+  .+++++|+ +.|++++.+|.+
T Consensus        37 ~~~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~~~~~--~~~v~~Ll-~~ga~~~~~d~~  110 (156)
T 1bi7_B           37 NPNAPNS-YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGF--LDTLVVLH-RAGARLDVRDAW  110 (156)
T ss_dssp             CTTCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTC--HHHHHHHH-HHTCCSSCCCTT
T ss_pred             CCCCCCC-CCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHHCCC--HHHHHHHH-HcCCCCcccCCC
Confidence            3567788 9999999985 99999999999999998 889999999 9999999999  99999999 789999999999


Q ss_pred             CCchhHHHHHhhhhc
Q 042220           84 GNTPLHVLAAVLQKE   98 (255)
Q Consensus        84 G~TpLh~A~~~~~~~   98 (255)
                      |+||||+|++.++.+
T Consensus       111 g~tpl~~A~~~~~~~  125 (156)
T 1bi7_B          111 GRLPVDLAEELGHRD  125 (156)
T ss_dssp             CCCHHHHHHHHTCHH
T ss_pred             CCCHHHHHHHhCHHH
Confidence            999999999986654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.64  E-value=3.3e-16  Score=128.16  Aligned_cols=139  Identities=17%  Similarity=0.003  Sum_probs=98.3

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. +|+||||+|+..|+.+++++|+++++...+.+|..|+||||+|+..++  .+++++|+ +.+.+++.+|.+|+
T Consensus        51 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~~~~Ll-~~g~~~~~~~~~g~  126 (223)
T 2f8y_A           51 ANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV--EGMLEDLI-NSHADVNAVDDLGK  126 (223)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCBCTTSC
T ss_pred             CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCc--HHHHHHHH-HcCCCCcCcCCCCC
Confidence            456788 899999999999999999999999884447889999999999999999  99999998 68899999999999


Q ss_pred             chhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCcccc
Q 042220           86 TPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSI  148 (255)
Q Consensus        86 TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~  148 (255)
                      ||||+|+..++.+      +...+.......+++.+..|+.-........+-.-|...+..+..+.+|+
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  195 (223)
T 2f8y_A          127 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR  195 (223)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHH
Confidence            9999999986654      11111111122345555555544433333333334554443333334443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.64  E-value=1.9e-16  Score=130.49  Aligned_cols=92  Identities=20%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             CCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcc----cccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhh
Q 042220            3 KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCC----KQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLIN   78 (255)
Q Consensus         3 ~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~   78 (255)
                      +..++.+|+ +|+||||+|+..|+.+++++|++.+++..    +.+|.+|+||||+|+..|+  .+++++|+ +.|.+++
T Consensus        27 g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~  102 (232)
T 2rfa_A           27 GCEVHQRGA-MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQN--VNLVRALL-ARGASVS  102 (232)
T ss_dssp             CSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTC--HHHHHHHH-HTTCCTT
T ss_pred             CCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCC--HHHHHHHH-hCCCCCC
Confidence            344667788 88888888888888888888888887652    3456788888888888888  88888888 6678887


Q ss_pred             ccCC-------------CCCchhHHHHHhhhhc
Q 042220           79 KQDV-------------NGNTPLHVLAAVLQKE   98 (255)
Q Consensus        79 ~~d~-------------~G~TpLh~A~~~~~~~   98 (255)
                      .+|.             +|+||||+|++.++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  135 (232)
T 2rfa_A          103 ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE  135 (232)
T ss_dssp             CCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHH
T ss_pred             cccCCcceeecccccccCCCCHHHHHHHcCCHH
Confidence            7765             6888888888876654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.64  E-value=3.2e-16  Score=129.46  Aligned_cols=88  Identities=18%  Similarity=0.168  Sum_probs=75.4

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHH----hCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIIS----TCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD   81 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d   81 (255)
                      ++.+|+ +|+||||+|++.|+.+++++|++    .+.++ +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|
T Consensus         2 ~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~   76 (241)
T 1k1a_A            2 ATRADE-DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTL--PSVVRLLV-TAGASPMALD   76 (241)
T ss_dssp             -----C-TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCC
T ss_pred             ccccCC-CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCC--HHHHHHHH-HcCCCccccC
Confidence            567889 99999999999999999999987    45566 7889999999999999999  99999999 7899999999


Q ss_pred             CCCCchhHHHHHhhhhc
Q 042220           82 VNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        82 ~~G~TpLh~A~~~~~~~   98 (255)
                      .+|+||||+|++.++.+
T Consensus        77 ~~g~t~l~~A~~~~~~~   93 (241)
T 1k1a_A           77 RHGQTAAHLACEHRSPT   93 (241)
T ss_dssp             TTSCCHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHcCCHH
Confidence            99999999999986654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.63  E-value=2.5e-16  Score=129.50  Aligned_cols=89  Identities=19%  Similarity=0.172  Sum_probs=72.5

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|+||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..|+  .+++++|++..|++++.+|.+|+
T Consensus        66 v~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~~g~~~~~~d~~g~  141 (222)
T 3ehr_A           66 VAEQAE-SIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGH--KDIVEMLFTQPNIELNQQNKLGD  141 (222)
T ss_dssp             HHHHEE-EESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHTTSTTCCCCCCCTTSC
T ss_pred             cccccc-ccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCC--HHHHHHHHcCCCCCccccCCCCC
Confidence            445566 7888888888888888888888888887 7788888888888888888  88888888433888888888888


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       142 tpL~~A~~~~~~~  154 (222)
T 3ehr_A          142 TALHAAAWKGYAD  154 (222)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCCHH
Confidence            8888888886654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.63  E-value=1e-15  Score=130.80  Aligned_cols=87  Identities=20%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. +|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|.
T Consensus        66 ~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~--~~~v~~Ll-~~g~~~~~~~~~g~  140 (299)
T 1s70_B           66 INYANV-DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGY--LDIAEYLI-SQGAHVGAVNSEGD  140 (299)
T ss_dssp             TTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             CcccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCC--HHHHHHHH-hCCCCCCCcCCCCC
Confidence            456677 7888888888888888888888888877 7778888888888888888  88888887 67888888888888


Q ss_pred             chhHHHHHhhhh
Q 042220           86 TPLHVLAAVLQK   97 (255)
Q Consensus        86 TpLh~A~~~~~~   97 (255)
                      ||||+|+..++.
T Consensus       141 t~l~~A~~~~~~  152 (299)
T 1s70_B          141 TPLDIAEEEAME  152 (299)
T ss_dssp             CHHHHCCSHHHH
T ss_pred             CHHHHHHhcchH
Confidence            888888776544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.63  E-value=1.2e-16  Score=127.78  Aligned_cols=82  Identities=22%  Similarity=0.272  Sum_probs=75.9

Q ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC-CCCCchh
Q 042220           10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD-VNGNTPL   88 (255)
Q Consensus        10 d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d-~~G~TpL   88 (255)
                      |+ +|+||||+|++.|+.++++.|++ +.++ +.+|.+|+||||+|+..|+  .+++++|+ +.|+++|.+| .+|+|||
T Consensus        41 ~~-~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~--~~~v~~Ll-~~ga~~~~~~~~~g~tpL  114 (183)
T 3deo_A           41 VS-EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGS--DKCVRLLA-EAGADLDHRDMRGGLTAL  114 (183)
T ss_dssp             HH-HHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCSSSSCCHH
T ss_pred             CC-CCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCcCCCCCCCCHH
Confidence            55 78999999999999999999999 7777 8899999999999999999  99999999 7899999998 8899999


Q ss_pred             HHHHHhhhh
Q 042220           89 HVLAAVLQK   97 (255)
Q Consensus        89 h~A~~~~~~   97 (255)
                      |+|+..++.
T Consensus       115 ~~A~~~~~~  123 (183)
T 3deo_A          115 HMAAGYVRP  123 (183)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHhcCcH
Confidence            999998554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.63  E-value=3.8e-16  Score=128.99  Aligned_cols=88  Identities=19%  Similarity=0.215  Sum_probs=79.9

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      .+.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|.
T Consensus         4 ~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~   78 (237)
T 3b7b_A            4 FKMEHQ-NKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNH--LEAVKYLI-KAGALVDPKDAEGS   78 (237)
T ss_dssp             CCCSSC-CSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-TTTCCCCCCCTTSC
T ss_pred             cccccC-CCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCC--HHHHHHHH-hCCCCCCCCCCCCC
Confidence            356788 8999999999999999999999999988 7889999999999999999  99999998 78999999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|+..++.+
T Consensus        79 t~L~~A~~~~~~~   91 (237)
T 3b7b_A           79 TCLHLAAKKGHYE   91 (237)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             cHHHHHHHcCCHH
Confidence            9999999986654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.63  E-value=3.8e-16  Score=129.81  Aligned_cols=92  Identities=26%  Similarity=0.260  Sum_probs=75.4

Q ss_pred             CCCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC
Q 042220            2 DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD   81 (255)
Q Consensus         2 d~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d   81 (255)
                      |+...+..+. +|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|+++|.+|
T Consensus        10 ~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~--~~~v~~Ll-~~ga~~n~~d   84 (229)
T 2vge_A           10 SPRKARRARL-NPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGAN--YSIVDFLI-TAGANVNSPD   84 (229)
T ss_dssp             CCCCCCCTTS-CHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCC
T ss_pred             CCcccccccc-chhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCCCC
Confidence            3444455555 7788889999999999999999888887 7788889999999999998  88888888 6788888888


Q ss_pred             CCCCchhHHHHHhhhhc
Q 042220           82 VNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        82 ~~G~TpLh~A~~~~~~~   98 (255)
                      .+|+||||+|+..++.+
T Consensus        85 ~~g~tpLh~A~~~g~~~  101 (229)
T 2vge_A           85 SHGWTPLHCAASCNDTV  101 (229)
T ss_dssp             TTCCCHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHcCCHH
Confidence            88999999998876543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.63  E-value=5.6e-16  Score=127.34  Aligned_cols=85  Identities=16%  Similarity=0.112  Sum_probs=79.8

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHh-CCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIIST-CPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      .++.+|. +|+||||+|+..|+.++++.|++. +.++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+
T Consensus        98 ~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~--~~~v~~Ll-~~ga~~~~~~~~  172 (222)
T 3ehr_A           98 GVNGLDK-AGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGY--ADIVQLLL-AKGARTDLRNIE  172 (222)
T ss_dssp             CTTCCCT-TSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTC--HHHHHHHH-HHTCCSCCCCTT
T ss_pred             CccccCC-CCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCccccCC
Confidence            3567888 999999999999999999999998 7777 8899999999999999999  99999999 789999999999


Q ss_pred             CCchhHHHHHh
Q 042220           84 GNTPLHVLAAV   94 (255)
Q Consensus        84 G~TpLh~A~~~   94 (255)
                      |+||||+|+..
T Consensus       173 g~t~l~~A~~~  183 (222)
T 3ehr_A          173 KKLAFDMATNA  183 (222)
T ss_dssp             SCCHHHHCCSH
T ss_pred             CCCHHHHhcch
Confidence            99999999987

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.63  E-value=5.8e-16  Score=127.01  Aligned_cols=136  Identities=16%  Similarity=0.085  Sum_probs=93.3

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhC--CCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTC--PDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +|. .|+||||+|+..|+.+++++|++++  ++. +.+|.+|+||||+|+..++  .+++++|+ +.|.+++.+|.+|+|
T Consensus        68 ~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~--~~~~~~Ll-~~g~~~~~~~~~g~t  142 (228)
T 2dzn_A           68 PDD-SGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKW--FEVSQFLI-ENGASVRIKDKFNQI  142 (228)
T ss_dssp             CCT-TSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCSCCCCTTSCC
T ss_pred             CCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCC--HhHHHHHH-HcCCCccccCCCCCC
Confidence            666 7888888888888888888888877  665 6777888888888888888  88888887 668888888888888


Q ss_pred             hhHHHHHhhhhc------cch-hhhHHHHhhccchHHHHHHHHHHHHHhccC-CCCCccCCCCCCCccccc
Q 042220           87 PLHVLAAVLQKE------KTA-VEEGEIKELKPRHTIVATLIATVTFAAGFT-LPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        87 pLh~A~~~~~~~------~~~-~~~~~~~~~~~~~~vvA~Liatvtf~a~l~-~PGg~~~~~~~~~g~~~~  149 (255)
                      |||+|++.++.+      +.. .........+++.+..|+.-........+- ..|...+..+.++.+|+.
T Consensus       143 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~  213 (228)
T 2dzn_A          143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED  213 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGG
T ss_pred             HHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHH
Confidence            888888876554      111 111222344566777776665555555554 555555444445556655

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.62  E-value=6.7e-16  Score=127.54  Aligned_cols=90  Identities=21%  Similarity=0.169  Sum_probs=79.4

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhh----hhhc
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM----LINK   79 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~----~i~~   79 (255)
                      ..++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.+.    +++.
T Consensus        37 ~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~--~~~~~~Ll-~~~~~~~~~~~~  111 (241)
T 1k1a_A           37 RELDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRS--PTCLRALL-DSAAPGTLDLEA  111 (241)
T ss_dssp             CCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HHSCTTSCCTTC
T ss_pred             CCCCcccc-cCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCccccccc
Confidence            45677888 8999999999999999999999999888 7889999999999999999  99999998 5554    8889


Q ss_pred             cCCCCCchhHHHHHhhhhc
Q 042220           80 QDVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        80 ~d~~G~TpLh~A~~~~~~~   98 (255)
                      +|.+|+||||+|++.++.+
T Consensus       112 ~~~~g~t~L~~A~~~~~~~  130 (241)
T 1k1a_A          112 RNYDGLTALHVAVNTECQE  130 (241)
T ss_dssp             CCTTSCCHHHHHHHHTCHH
T ss_pred             cCcCCCcHHHHHHHcCCHH
Confidence            9999999999999886654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.62  E-value=9.6e-16  Score=126.57  Aligned_cols=86  Identities=23%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhh-hhhhccCCCCC
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE-MLINKQDVNGN   85 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~-~~i~~~d~~G~   85 (255)
                      +.+|+ +|+||||+|+..|+.+++++|++++++. +.+|..|+||||+|+..|+  .+++++|+ +.+ .+++.+|..|.
T Consensus        38 ~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~~~~Ll-~~~~~~~~~~~~~g~  112 (237)
T 3b7b_A           38 DTCSE-DQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGH--YEVVQYLL-SNGQMDVNCQDDGGW  112 (237)
T ss_dssp             TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTC--HHHHHHHH-TTTCCCTTCCCTTSC
T ss_pred             CccCC-CCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCC--HHHHHHHH-hCCCCCcccCCCCCC
Confidence            44555 6666666666666666666666666555 5556666666666666666  66666665 333 55666666666


Q ss_pred             chhHHHHHhhhh
Q 042220           86 TPLHVLAAVLQK   97 (255)
Q Consensus        86 TpLh~A~~~~~~   97 (255)
                      ||||+|++.++.
T Consensus       113 t~L~~A~~~~~~  124 (237)
T 3b7b_A          113 TPMIWATEYKHV  124 (237)
T ss_dssp             CHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCH
Confidence            666666655443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.62  E-value=5.9e-16  Score=128.65  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=81.2

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC-CC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD-VN   83 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d-~~   83 (255)
                      .++.+|. +|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+| .+
T Consensus        46 ~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~--~~~v~~Ll-~~ga~~~~~~~~~  120 (229)
T 2vge_A           46 DPSQPNE-EGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCND--TVICMALV-QHGAAIFATTLSD  120 (229)
T ss_dssp             CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-TTTCCTTCCCSST
T ss_pred             CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCcccccCCC
Confidence            3567888 9999999999999999999999999998 8899999999999999999  99999999 7899999987 69


Q ss_pred             CCchhHHH--HHhhhhc
Q 042220           84 GNTPLHVL--AAVLQKE   98 (255)
Q Consensus        84 G~TpLh~A--~~~~~~~   98 (255)
                      |+||||+|  +..++.+
T Consensus       121 g~tpL~~A~a~~~~~~~  137 (229)
T 2vge_A          121 GATAFEKCDPYREGYAD  137 (229)
T ss_dssp             TCCTGGGCCTTSTTHHH
T ss_pred             CCCHHHHHHHHhcChHH
Confidence            99999999  7765544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.62  E-value=3.4e-16  Score=133.50  Aligned_cols=140  Identities=11%  Similarity=0.077  Sum_probs=94.7

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHH-----HhCCchHHHHHHHhhhhhhhhhcc
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAM-----ASSNLFQLHSRLRNRSVEMLINKQ   80 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~-----~~g~~~~~~~~~Ll~~~~~~i~~~   80 (255)
                      ++.+|+ +|+||||+|+..|+.++++.|++.++...+.+|..|+||||+|+     ..++  .++++.|+ +.|.+.+..
T Consensus       104 ~n~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~--~~~v~~Ll-~~g~~~~~~  179 (276)
T 4hbd_A          104 VNIADS-NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD--IETVLQLF-RLGNINAKA  179 (276)
T ss_dssp             HTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHH--HHHHHHHH-HHSCTTCCC
T ss_pred             CcCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhh--HHHHHHHH-HcCCCcccc
Confidence            678899 99999999999999999999999998333777888888888877     4455  67777776 566777777


Q ss_pred             CCCCCchhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHhccCC-CCCccCCCCCCCccccc
Q 042220           81 DVNGNTPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAAGFTL-PGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        81 d~~G~TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a~l~~-PGg~~~~~~~~~g~~~~  149 (255)
                      |.+|+||||+|+..++.+      +...+.+...+.+++.++.|+.-........+-. +|...+..+.++.+|+.
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~  255 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALM  255 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHH
Confidence            777888888887776544      1111111222345566666665554444444444 66665555555555553

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.61  E-value=6.7e-16  Score=128.66  Aligned_cols=82  Identities=23%  Similarity=0.290  Sum_probs=62.9

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      .|.||||.|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|+++|.+|.+|+||||+|+
T Consensus        36 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~--~~~v~~Ll-~~ga~~~~~d~~g~tpL~~A~  111 (239)
T 1ycs_B           36 LPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGH--TEIVKFLV-QFGVNVNAADSDGWTPLHCAA  111 (239)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTC--HHHHHHHH-HHTCCTTCCCTTCCCHHHHHH
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCccCCCCCCHHHHHH
Confidence            5677888888888888888888777776 6777778888888888888  78888777 567778888888888888887


Q ss_pred             Hhhhhc
Q 042220           93 AVLQKE   98 (255)
Q Consensus        93 ~~~~~~   98 (255)
                      ..++.+
T Consensus       112 ~~~~~~  117 (239)
T 1ycs_B          112 SCNNVQ  117 (239)
T ss_dssp             HTTCHH
T ss_pred             HcCCHH
Confidence            776554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.61  E-value=2e-15  Score=131.79  Aligned_cols=86  Identities=17%  Similarity=0.039  Sum_probs=74.0

Q ss_pred             cee-ecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCc-hHHHHHHHhhhhhhhhhccCCC
Q 042220            6 ACI-SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL-FQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         6 v~~-~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~-~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      ++. +|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+. -.+.++.+++....+++.+|.+
T Consensus       123 vn~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~  200 (327)
T 1sw6_A          123 LNIPVDE-HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM  200 (327)
T ss_dssp             SCSCCST-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred             cccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence            566 788 9999999999999999999999999998 88999999999999998750 0245666664334789999999


Q ss_pred             CCchhHHHHH
Q 042220           84 GNTPLHVLAA   93 (255)
Q Consensus        84 G~TpLh~A~~   93 (255)
                      |+||||+|++
T Consensus       201 g~tpLh~A~~  210 (327)
T 1sw6_A          201 NRTILHHIII  210 (327)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999999998

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.61  E-value=8.3e-16  Score=127.23  Aligned_cols=89  Identities=25%  Similarity=0.288  Sum_probs=69.9

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCc-----ccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhcc
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDC-----CKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQ   80 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~   80 (255)
                      ++.+|. +|+||||+|+..|+.+++++|++.+++.     .+..|..|+||||+|+..|+  .+++++|+ +.|++++.+
T Consensus        71 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~  146 (236)
T 1ikn_D           71 PELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY--LGIVELLV-SLGADVNAQ  146 (236)
T ss_dssp             SCCCCT-TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC--HHHHHHHH-HHTCCTTCC
T ss_pred             CCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCC
Confidence            466777 8888888888888888888888877542     35667778888888888888  88888887 678888888


Q ss_pred             CC-CCCchhHHHHHhhhhc
Q 042220           81 DV-NGNTPLHVLAAVLQKE   98 (255)
Q Consensus        81 d~-~G~TpLh~A~~~~~~~   98 (255)
                      |. +|+||||+|++.++.+
T Consensus       147 ~~~~g~tpL~~A~~~~~~~  165 (236)
T 1ikn_D          147 EPCNGRTALHLAVDLQNPD  165 (236)
T ss_dssp             CTTTCCCHHHHHHHTTCHH
T ss_pred             CCCCCCCHHHHHHHcCCHH
Confidence            87 8888888888876654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.61  E-value=1.6e-15  Score=126.32  Aligned_cols=80  Identities=13%  Similarity=-0.098  Sum_probs=26.5

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      .|.||||.|++.|+.+.++.|++++.++ + .+..|.||||.|+..|+  .++++.|+ +.|.++|.+|.+|+||||+|+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~-~~~~~~t~L~~A~~~g~--~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-K-FNPLPLALLLDSSLEGE--FDLVQRII-YEVDDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTC--HHHHHHHT-STTSSCCCCCTTSCCHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCc-c-cCchhhHHHHHHHHcCC--HHHHHHHH-HcCCCCCCcCCCCCCHHHHHH
Confidence            3555555555555555555555555554 2 23445555555555555  55555555 445555555555555555555


Q ss_pred             Hhhhh
Q 042220           93 AVLQK   97 (255)
Q Consensus        93 ~~~~~   97 (255)
                      ..++.
T Consensus        79 ~~g~~   83 (239)
T 1ycs_B           79 CAGHT   83 (239)
T ss_dssp             HHTCH
T ss_pred             HcCCH
Confidence            55443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.61  E-value=7.5e-16  Score=129.23  Aligned_cols=85  Identities=22%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccc--------------cCCchHHHHHHHhCCchHHHHHHHhhh
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVD--------------ERGWNLLHFAMASSNLFQLHSRLRNRS   72 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~G~t~Lh~A~~~g~~~~~~~~~Ll~~   72 (255)
                      +.+|. +|+||||+|+..|+.++++.|+++++++ +.+|              .+|+||||+|+..|+  .+++++|+ +
T Consensus        87 ~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~--~~~v~~Ll-~  161 (260)
T 3jxi_A           87 RDVYY-RGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ--PHIVHYLT-E  161 (260)
T ss_dssp             CCSSE-ESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC--HHHHHHHH-H
T ss_pred             ccccc-CCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCC--HHHHHHHH-h
Confidence            44566 8999999999999999999999999998 6777              589999999999999  99999999 6


Q ss_pred             ---hhhhhhccCCCCCchhHHHHHhhh
Q 042220           73 ---VEMLINKQDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        73 ---~~~~i~~~d~~G~TpLh~A~~~~~   96 (255)
                         .|++++.+|.+|+||||+|++.++
T Consensus       162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          162 NGHKQADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             ccccCCCCcccCCCCCcHHHHHHHhcc
Confidence               899999999999999999998643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.61  E-value=2e-16  Score=127.53  Aligned_cols=80  Identities=10%  Similarity=-0.039  Sum_probs=60.0

Q ss_pred             CCCCCcHHHHHHHcC----hHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCc----hHHHHHHHhhhhhhhhhccCC
Q 042220           11 NDQKMTALLLAAGRG----HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL----FQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus        11 ~~~G~tpLh~Aa~~g----~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~----~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      . .|+||||+|+.+|    +.+++++|+++++++ +.+|.+|+||||+|+..++.    ..+++++|+ +.|+++|.+|.
T Consensus        36 ~-~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll-~~Gadin~~d~  112 (186)
T 3t8k_A           36 V-LKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL-EKGADITALYK  112 (186)
T ss_dssp             H-HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHH-HTTCCSSSCBG
T ss_pred             c-CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHH-HCCCCCCccCC
Confidence            5 6788888888776    377888888888877 77778888888888877751    135677777 67788888888


Q ss_pred             CCC-chhHHHHH
Q 042220           83 NGN-TPLHVLAA   93 (255)
Q Consensus        83 ~G~-TpLh~A~~   93 (255)
                      +|+ ||||+|+.
T Consensus       113 ~g~ttpLh~A~~  124 (186)
T 3t8k_A          113 PYKIVVFKNIFN  124 (186)
T ss_dssp             GGTBCTTGGGGG
T ss_pred             CcCchHHHHHHH
Confidence            887 88888776

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.61  E-value=1.2e-15  Score=127.75  Aligned_cols=81  Identities=20%  Similarity=0.126  Sum_probs=75.1

Q ss_pred             CCcHHHHHHHcChHHHHHHHHH---hCCCcccccccCCchHHHHHHH--hCCchHH-------HHHHHhhhhhhhh----
Q 042220           14 KMTALLLAAGRGHIRVVNEIIS---TCPDCCKQVDERGWNLLHFAMA--SSNLFQL-------HSRLRNRSVEMLI----   77 (255)
Q Consensus        14 G~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~G~t~Lh~A~~--~g~~~~~-------~~~~Ll~~~~~~i----   77 (255)
                      |+||||+|+..|+.+++++|++   +++++ +.+|.+|+||||+|+.  .++  .+       ++++|+ +.|+++    
T Consensus       136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~--~~~~~~~~~iv~~Ll-~~ga~~~~~~  211 (256)
T 2etb_A          136 GELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNS--PENSALVIHMYDGLL-QMGARLCPTV  211 (256)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSC--HHHHHHHHHHHHHHH-HHHHHHSTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCC--chhhHHHHHHHHHHH-HcCCCccccc
Confidence            9999999999999999999999   88888 8899999999999999  677  77       999998 789999    


Q ss_pred             ---hccCCCCCchhHHHHHhhhhc
Q 042220           78 ---NKQDVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        78 ---~~~d~~G~TpLh~A~~~~~~~   98 (255)
                         +.+|.+|+||||+|++.++.+
T Consensus       212 ~~~~~~d~~g~tpL~~A~~~g~~~  235 (256)
T 2etb_A          212 QLEEISNHQGLTPLKLAAKEGKIE  235 (256)
T ss_dssp             CGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccCCCCCCHHHHHHHhCCHH
Confidence               999999999999999996654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.61  E-value=9.5e-16  Score=126.31  Aligned_cols=86  Identities=24%  Similarity=0.198  Sum_probs=77.8

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCccccccc-------------CCchHHHHHHHhCCchHHHHHHHhhhh
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDE-------------RGWNLLHFAMASSNLFQLHSRLRNRSV   73 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-------------~G~t~Lh~A~~~g~~~~~~~~~Ll~~~   73 (255)
                      +.+|. +|+||||+|+..|+.+++++|+++++++ +.++.             +|+||||+|+..|+  .+++++|+ +.
T Consensus        69 ~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~  143 (232)
T 2rfa_A           69 TSELY-EGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGS--EEIVRLLI-EH  143 (232)
T ss_dssp             CSTTT-TTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTC--HHHHHHHH-HT
T ss_pred             cccCC-CCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCC--HHHHHHHH-HC
Confidence            45677 8999999999999999999999999987 55554             79999999999999  99999999 78


Q ss_pred             hhhhhccCCCCCchhHHHHHhhhh
Q 042220           74 EMLINKQDVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        74 ~~~i~~~d~~G~TpLh~A~~~~~~   97 (255)
                      |++++.+|.+|+||||+|+..++.
T Consensus       144 ga~~~~~d~~g~t~L~~A~~~~~~  167 (232)
T 2rfa_A          144 GADIRAQDSLGNTVLHILILQPNK  167 (232)
T ss_dssp             TCCTTCCCTTSCCHHHHHHTCSCH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCh
Confidence            999999999999999999998543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.60  E-value=7.7e-16  Score=138.71  Aligned_cols=88  Identities=17%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ .|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|.++|.+|.+|+
T Consensus         7 ~~~~~~-~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~--~~~v~~Ll-~~g~~~~~~~~~g~   81 (437)
T 1n11_A            7 GGGGGE-SGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGH--TEVAKYLL-QNKAKVNAKAKDDQ   81 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTC--HHHHHHHH-HHTCCSSCCCTTSC
T ss_pred             ccccCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-hCCCCCCCCCCCCC
Confidence            456777 8888888888888888888888888877 6778888888888888888  88888888 67888888888888


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus        82 t~L~~A~~~g~~~   94 (437)
T 1n11_A           82 TPLHCAARIGHTN   94 (437)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHCCCHH
Confidence            8888888886654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.60  E-value=1.3e-15  Score=127.65  Aligned_cols=82  Identities=20%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccC-------------CchHHHHHHHhCCchHHHHHHHhhh--h
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDER-------------GWNLLHFAMASSNLFQLHSRLRNRS--V   73 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-------------G~t~Lh~A~~~g~~~~~~~~~Ll~~--~   73 (255)
                      +|. +|+||||+|+..|+.++++.|+++++++ +.+|..             |+||||+|+..|+  .+++++|++.  .
T Consensus        86 ~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~--~~~v~~Ll~~~~~  161 (256)
T 2etb_A           86 EFY-QGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQ--WDVVTYLLENPHQ  161 (256)
T ss_dssp             TTT-TTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC--HHHHHHHHHCSSC
T ss_pred             ccc-cCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCC--HHHHHHHHhcccc
Confidence            345 7999999999999999999999999998 777776             9999999999999  9999999932  8


Q ss_pred             hhhhhccCCCCCchhHHHHHh
Q 042220           74 EMLINKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        74 ~~~i~~~d~~G~TpLh~A~~~   94 (255)
                      |+++|.+|.+|+||||+|++.
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~  182 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMI  182 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHc
Confidence            999999999999999999984

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.60  E-value=4.3e-16  Score=133.34  Aligned_cols=87  Identities=15%  Similarity=0.051  Sum_probs=77.7

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|. +|+||||+|+..|+.++++.|+++++++ +.+  +|+||||+|+..|+  .+++++|+ +.|++++.+|.+|
T Consensus        23 ~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~--~~~v~~Ll-~~ga~~~~~d~~g   95 (285)
T 3kea_A           23 DTFKADV-HGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLED--TKIVKILL-FSGLDDSQFDDKG   95 (285)
T ss_dssp             TTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSS--CHHHHHHH-HTTCCTTCCCTTS
T ss_pred             CCCccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCCcCCCC
Confidence            3578888 9999999999999999999999998887 444  49999999999999  99999999 7899999999999


Q ss_pred             CchhHHHHHhhhhc
Q 042220           85 NTPLHVLAAVLQKE   98 (255)
Q Consensus        85 ~TpLh~A~~~~~~~   98 (255)
                      +||||+|+..++.+
T Consensus        96 ~t~L~~A~~~g~~~  109 (285)
T 3kea_A           96 NTALYYAVDSGNMQ  109 (285)
T ss_dssp             CCHHHHHHHTTCHH
T ss_pred             CcHHHHHHHcCCHH
Confidence            99999999987655

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.60  E-value=1.7e-15  Score=128.15  Aligned_cols=84  Identities=24%  Similarity=0.239  Sum_probs=77.1

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhCCCccccccc--------------CCchHHHHHHHhCCchHHHHHHHhhh--
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDE--------------RGWNLLHFAMASSNLFQLHSRLRNRS--   72 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~G~t~Lh~A~~~g~~~~~~~~~Ll~~--   72 (255)
                      +|. +|+||||+|++.|+.+++++|+++++++ +.+|.              .|+||||+|+..|+  .+++++|++.  
T Consensus        97 ~d~-~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~--~~~v~~Ll~~~~  172 (273)
T 2pnn_A           97 SYY-KGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ--LAIVKFLLQNSW  172 (273)
T ss_dssp             TTT-TTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC--HHHHHHHHHCSS
T ss_pred             ccC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCC--HHHHHHHHhccc
Confidence            566 8999999999999999999999999998 67776              79999999999999  9999999932  


Q ss_pred             hhhhhhccCCCCCchhHHHHHhhh
Q 042220           73 VEMLINKQDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        73 ~~~~i~~~d~~G~TpLh~A~~~~~   96 (255)
                      .|++++.+|.+|+||||+|++.++
T Consensus       173 ~gad~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          173 QPADISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CCCCceeeCCCCCcHHHHHHHccC
Confidence            899999999999999999999754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.59  E-value=2.2e-15  Score=130.76  Aligned_cols=90  Identities=29%  Similarity=0.279  Sum_probs=83.4

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      ..++.+|. +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|.+++.+|.+
T Consensus        49 ~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~--~~iv~~Ll-~~g~~~~~~~~~  123 (351)
T 3utm_A           49 VNCHASDG-RKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGH--YEVTELLL-KHGACVNAMDLW  123 (351)
T ss_dssp             TTCCCSST-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTT
T ss_pred             CCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCC--HHHHHHHH-HCCCCCCCCCCC
Confidence            34567888 9999999999999999999999999998 8899999999999999999  99999999 789999999999


Q ss_pred             CCchhHHHHHhhhhc
Q 042220           84 GNTPLHVLAAVLQKE   98 (255)
Q Consensus        84 G~TpLh~A~~~~~~~   98 (255)
                      |.||||+|++.++.+
T Consensus       124 g~t~L~~A~~~~~~~  138 (351)
T 3utm_A          124 QFTPLHEAASKNRVE  138 (351)
T ss_dssp             CCCHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHcCCHH
Confidence            999999999987654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.59  E-value=1.6e-15  Score=131.22  Aligned_cols=84  Identities=19%  Similarity=0.173  Sum_probs=78.8

Q ss_pred             ecCCCCCcHHHHHHHc---ChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            9 SDNDQKMTALLLAAGR---GHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      +|. +|+||||+|+..   |+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+
T Consensus       186 ~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~--~~~v~~Ll-~~gad~~~~d~~G~  260 (301)
T 2b0o_E          186 AQA-PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQ--PDCLKLLL-KGRALVGTVNEAGE  260 (301)
T ss_dssp             SCS-CEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCCSCCCTTSC
T ss_pred             cCC-CCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCCcCCCCC
Confidence            477 899999999997   8999999999999998 8899999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhh
Q 042220           86 TPLHVLAAVLQK   97 (255)
Q Consensus        86 TpLh~A~~~~~~   97 (255)
                      ||||+|+..++.
T Consensus       261 TpL~~A~~~~~~  272 (301)
T 2b0o_E          261 TALDIARKKHHK  272 (301)
T ss_dssp             CHHHHHHHHTCH
T ss_pred             CHHHHHHHcCCH
Confidence            999999998554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.59  E-value=5e-16  Score=130.07  Aligned_cols=81  Identities=23%  Similarity=0.299  Sum_probs=75.5

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC-CCCCchhHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD-VNGNTPLHVL   91 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d-~~G~TpLh~A   91 (255)
                      +|+||||+|++.|+.++++.|++ +.++ +.+|.+|+||||+|+..|+  .+++++|+ +.|+++|.+| .+|+||||+|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~--~~~v~~Ll-~~ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGS--DKCVRLLA-EAGADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCSSSCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCC--HHHHHHHH-HcCCCCCcCCCCCCCCHHHHH
Confidence            68999999999999999999999 8877 8899999999999999999  99999999 7899999998 8899999999


Q ss_pred             HHhhhhc
Q 042220           92 AAVLQKE   98 (255)
Q Consensus        92 ~~~~~~~   98 (255)
                      +..++.+
T Consensus       119 ~~~g~~~  125 (244)
T 3ui2_A          119 AGYVRPE  125 (244)
T ss_dssp             HHTTCHH
T ss_pred             HHcCCHH
Confidence            9986654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.58  E-value=1.8e-15  Score=133.13  Aligned_cols=88  Identities=17%  Similarity=0.145  Sum_probs=76.5

Q ss_pred             ceeecCCCCCcHHHHHHHcC--hHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhh-----hh
Q 042220            6 ACISDNDQKMTALLLAAGRG--HIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEML-----IN   78 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~-----i~   78 (255)
                      .+.+|. +|+||||+|+..|  +.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.+.+     +|
T Consensus       131 ~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~--~~~v~~Ll-~~g~~~~~~~~~  205 (364)
T 3ljn_A          131 SHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRN--REALDLMM-DTVPSKSSLRLD  205 (364)
T ss_dssp             TEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HHCSCSSSCCTT
T ss_pred             cccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCC--HHHHHHHH-hccccccccccc
Confidence            466788 8999999999999  899999999998888 7888899999999999999  99999988 66777     88


Q ss_pred             ccCCCCCchhHHHHHhhhhc
Q 042220           79 KQDVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        79 ~~d~~G~TpLh~A~~~~~~~   98 (255)
                      .+|.+|+||||+|++.++.+
T Consensus       206 ~~~~~g~t~L~~A~~~g~~~  225 (364)
T 3ljn_A          206 YANKQGNSHLHWAILINWED  225 (364)
T ss_dssp             CCCTTCCCTTHHHHTTTCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHH
Confidence            99999999999999887665

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.58  E-value=6.3e-15  Score=124.09  Aligned_cols=84  Identities=17%  Similarity=0.050  Sum_probs=78.2

Q ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhH
Q 042220           10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLH   89 (255)
Q Consensus        10 d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh   89 (255)
                      |. .|+||||+|++.|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|.+++.+|.+|.||||
T Consensus        36 ~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~t~L~  110 (285)
T 1wdy_A           36 EE-GGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGS--VKLLKLFL-SKGADVNECDFYGFTAFM  110 (285)
T ss_dssp             TT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCBCTTCCBHHH
T ss_pred             CC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCCccCcccCCHHH
Confidence            66 8999999999999999999999999988 7889999999999999999  99999999 789999999999999999


Q ss_pred             HHHHhhhhc
Q 042220           90 VLAAVLQKE   98 (255)
Q Consensus        90 ~A~~~~~~~   98 (255)
                      +|++.++.+
T Consensus       111 ~A~~~~~~~  119 (285)
T 1wdy_A          111 EAAVYGKVK  119 (285)
T ss_dssp             HHHHTTCHH
T ss_pred             HHHHhCCHH
Confidence            999987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.58  E-value=1.7e-15  Score=136.46  Aligned_cols=88  Identities=23%  Similarity=0.208  Sum_probs=81.4

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. .|+||||+|++.|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|..|.
T Consensus        40 ~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~--~~~v~~Ll-~~ga~~~~~~~~g~  114 (437)
T 1n11_A           40 PNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGH--TNMVKLLL-ENNANPNLATTAGH  114 (437)
T ss_dssp             SCCSSS-CCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTC--HHHHHHHH-HHTCCTTCCCTTCC
T ss_pred             CCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCC--HHHHHHHH-hCCCCCCCCCCCCC
Confidence            456778 8999999999999999999999999998 8899999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       115 t~L~~A~~~g~~~  127 (437)
T 1n11_A          115 TPLHIAAREGHVE  127 (437)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             cHHHHHHHcCCHH
Confidence            9999999987765

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.58  E-value=1.7e-15  Score=139.59  Aligned_cols=84  Identities=20%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             cCCCCCcHHHHHHH---cChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220           10 DNDQKMTALLLAAG---RGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus        10 d~~~G~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      |. +|+||||+|++   .|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|+++|.+|.+|+|
T Consensus       168 ~~-~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpLh~A~~~g~--~~~v~~Ll-~~ga~~~~~d~~g~t  242 (497)
T 3lvq_E          168 QA-PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQ--PDCLKLLL-KGRALVGTVNEAGET  242 (497)
T ss_dssp             CC-SCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHHHHHTTTTC--HHHHHHHH-HTCCCCSCCCTTCCC
T ss_pred             cc-ccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCC--HHHHHHHH-HcCCCCCCcCCCCCC
Confidence            67 89999999966   99999999999999998 8899999999999999999  99999999 789999999999999


Q ss_pred             hhHHHHHhhhhc
Q 042220           87 PLHVLAAVLQKE   98 (255)
Q Consensus        87 pLh~A~~~~~~~   98 (255)
                      |||+|+..++.+
T Consensus       243 pl~~A~~~~~~~  254 (497)
T 3lvq_E          243 ALDIARKKHHKE  254 (497)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHH
Confidence            999999987655

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.58  E-value=4.3e-15  Score=124.58  Aligned_cols=85  Identities=20%  Similarity=0.119  Sum_probs=75.3

Q ss_pred             CCCCCcHHHHHHHcChHHHHHHHHH---hCCCcccccccCCchHHHHHHHhCCch-------HHHHHHHhhhhhhhh---
Q 042220           11 NDQKMTALLLAAGRGHIRVVNEIIS---TCPDCCKQVDERGWNLLHFAMASSNLF-------QLHSRLRNRSVEMLI---   77 (255)
Q Consensus        11 ~~~G~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~G~t~Lh~A~~~g~~~-------~~~~~~Ll~~~~~~i---   77 (255)
                      . +|+||||+|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..++..       .+++++|+ +.|+++   
T Consensus       138 ~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll-~~ga~~~~~  214 (260)
T 3jxi_A          138 Y-FGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL-IKCAKLFPD  214 (260)
T ss_dssp             C-SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH-HHHHHHCTT
T ss_pred             c-CCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH-HhCcccccc
Confidence            5 79999999999999999999999   88888 889999999999999877611       37888888 789998   


Q ss_pred             ----hccCCCCCchhHHHHHhhhhc
Q 042220           78 ----NKQDVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        78 ----~~~d~~G~TpLh~A~~~~~~~   98 (255)
                          +.+|.+|+||||+|++.++.+
T Consensus       215 ~~~~~~~d~~g~tpL~~A~~~g~~~  239 (260)
T 3jxi_A          215 TNLEALLNNDGLSPLMMAAKTGKIG  239 (260)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             cchhhcccCCCCCHHHHHHHcCCHH
Confidence                789999999999999996654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.58  E-value=2.8e-15  Score=131.99  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=81.4

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCC-----cccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhcc
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPD-----CCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQ   80 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~-----~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~   80 (255)
                      ++.+|. +|+||||+|+..|+.+++++|++++++     + +.+|..|+||||+|+..|+  .+++++|+ +.|++++.+
T Consensus       166 ~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~--~~~v~~Ll-~~gad~~~~  240 (364)
T 3ljn_A          166 PTAKDK-ADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINW--EDVAMRFV-EMGIDVNME  240 (364)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTC--HHHHHHHH-TTTCCTTCC
T ss_pred             CcccCC-CCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCC--HHHHHHHH-HcCCCCCCC
Confidence            567788 999999999999999999999999988     6 7899999999999999999  99999999 789999999


Q ss_pred             CCCCCchhHHHHHhhhh
Q 042220           81 DVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        81 d~~G~TpLh~A~~~~~~   97 (255)
                      |.+|+||||+|++.++.
T Consensus       241 d~~g~tpL~~A~~~g~~  257 (364)
T 3ljn_A          241 DNEHTVPLYLSVRAAMV  257 (364)
T ss_dssp             CTTSCCHHHHHHHTCCH
T ss_pred             CCCCCCHHHHHHHhChH
Confidence            99999999999998543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.57  E-value=4.6e-15  Score=131.90  Aligned_cols=87  Identities=16%  Similarity=0.181  Sum_probs=75.8

Q ss_pred             ceeec--CCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            6 ACISD--NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         6 v~~~d--~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      ++.+|  . +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+
T Consensus       226 vn~~~~~~-~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~--~~~v~~LL-~~Gad~~~~d~~  300 (368)
T 3jue_A          226 VNWVNGGQ-DNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGH--TGLACLFL-KRGADLGARDSE  300 (368)
T ss_dssp             TTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTT
T ss_pred             CCcccccc-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCc--HHHHHHHH-HCcCCCCCcCCC
Confidence            34555  6 7899999999999999999999999888 7889999999999999999  99999998 678999999999


Q ss_pred             CCchhHHHHHhhhh
Q 042220           84 GNTPLHVLAAVLQK   97 (255)
Q Consensus        84 G~TpLh~A~~~~~~   97 (255)
                      |+||||+|+..++.
T Consensus       301 G~TpL~~A~~~g~~  314 (368)
T 3jue_A          301 GRDPLTIAMETANA  314 (368)
T ss_dssp             SCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHCCCH
Confidence            99999999988554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.57  E-value=1.1e-15  Score=123.29  Aligned_cols=77  Identities=16%  Similarity=0.017  Sum_probs=55.5

Q ss_pred             CCcHHHHHHHcChHHHHHHHHHhCCCcccccc-cCCchHHHHHHHhCCchH----HHHHHHhhhhhhhhhccCCCCCchh
Q 042220           14 KMTALLLAAGRGHIRVVNEIISTCPDCCKQVD-ERGWNLLHFAMASSNLFQ----LHSRLRNRSVEMLINKQDVNGNTPL   88 (255)
Q Consensus        14 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~~----~~~~~Ll~~~~~~i~~~d~~G~TpL   88 (255)
                      +.++||.|++.|+.+.++.+++.+++   .+| .+|+||||+|+.+++  .    +++++|+ +.|+++|.+|.+|+|||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~--~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNN--DEARYKISMFLI-NKGADIKSRTKEGTTLF   79 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSC--HHHHHHHHHHHH-HTTCCSSCCCTTCCCTH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCC--cchHHHHHHHHH-HCCCCCCCCCCCCCcHH
Confidence            45677888888888777777776643   233 667888888877776  4    3677777 67788888888888888


Q ss_pred             HHHHHhhh
Q 042220           89 HVLAAVLQ   96 (255)
Q Consensus        89 h~A~~~~~   96 (255)
                      |+|+..++
T Consensus        80 h~a~~~~~   87 (186)
T 3t8k_A           80 FPLFQGGG   87 (186)
T ss_dssp             HHHHHHCT
T ss_pred             HHHHHcCC
Confidence            88777654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.57  E-value=4.3e-15  Score=127.03  Aligned_cols=86  Identities=16%  Similarity=0.090  Sum_probs=57.4

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.+.+++..+ +|.
T Consensus        85 ~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~-~g~  158 (285)
T 3d9h_A           85 VNIITA-DHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGS--WDCVNLLL-QHGASVQPES-DLA  158 (285)
T ss_dssp             SCEECT-TCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTC--HHHHHHHH-HTTCCSSCSC-TTS
T ss_pred             CCCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCH--HHHHHHHH-HCCCCCCCCC-CCC
Confidence            566677 7777777777777777777777777776 6667777777777777777  66666666 4555554433 356


Q ss_pred             chhHHHHHhhhh
Q 042220           86 TPLHVLAAVLQK   97 (255)
Q Consensus        86 TpLh~A~~~~~~   97 (255)
                      ||||+|++.++.
T Consensus       159 t~L~~A~~~g~~  170 (285)
T 3d9h_A          159 SPIHEAARRGHV  170 (285)
T ss_dssp             CHHHHHHHHTCH
T ss_pred             CHHHHHHHcCCH
Confidence            666666655443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.56  E-value=4.2e-15  Score=119.64  Aligned_cols=87  Identities=15%  Similarity=0.090  Sum_probs=77.4

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhh-hhhhccCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE-MLINKQDVNG   84 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~-~~i~~~d~~G   84 (255)
                      ++.+|. .|+||||+|+..|+.+++++|+++++...+.+|..|+||||+|+..|+  .+++++|+ +.+ .+++.+|.+|
T Consensus        65 ~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~~g  140 (201)
T 3hra_A           65 INLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH--IDNVKLLL-EDGREDIDFQNDFG  140 (201)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTC--HHHHHHHH-HHCCCCTTCCCTTS
T ss_pred             CCCCCC-CCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCC--HHHHHHHH-HcCCCCcCCCCCCC
Confidence            466788 999999999999999999999966654448899999999999999999  99999999 566 8999999999


Q ss_pred             CchhHHHHHhhh
Q 042220           85 NTPLHVLAAVLQ   96 (255)
Q Consensus        85 ~TpLh~A~~~~~   96 (255)
                      +||||+|+..++
T Consensus       141 ~t~L~~A~~~~~  152 (201)
T 3hra_A          141 YTALIEAVGLRE  152 (201)
T ss_dssp             CCHHHHHHHSSC
T ss_pred             CCHHHHHHHhcc
Confidence            999999998743

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.56  E-value=3.4e-15  Score=130.29  Aligned_cols=85  Identities=14%  Similarity=-0.012  Sum_probs=76.0

Q ss_pred             cceeecCCCCCcHHHHHHH----cChHHHHHHHHHhCC------------------------------------------
Q 042220            5 AACISDNDQKMTALLLAAG----RGHIRVVNEIISTCP------------------------------------------   38 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~----~g~~~~v~~Ll~~~~------------------------------------------   38 (255)
                      .++.+|+ +|+||||+|++    .|+.++++.|++.+.                                          
T Consensus       193 ~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~L  271 (327)
T 1sw6_A          193 CLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  271 (327)
T ss_dssp             GGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             cccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHH
Confidence            3678899 99999999999    899999999987632                                          


Q ss_pred             ---CcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHh
Q 042220           39 ---DCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        39 ---~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~   94 (255)
                         ++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+||||+|++.
T Consensus       272 l~~~~-n~~d~~G~TpLh~A~~~g~--~~~v~~Ll-~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          272 IANML-NAQDSNGDTCLNIAARLGN--ISIVDALL-DYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHTT-TCCCTTSCCHHHHHHHHCC--HHHHHHHH-HTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHhCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCCcccCCCCCCHHHHHHhc
Confidence               33 6789999999999999999  99999999 78999999999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.54  E-value=1.2e-14  Score=122.93  Aligned_cols=83  Identities=18%  Similarity=0.124  Sum_probs=73.5

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHH---hCCCcccccccCCchHHHHHHHhCCc-------hHHHHHHHhhhhhhhhh----
Q 042220           13 QKMTALLLAAGRGHIRVVNEIIS---TCPDCCKQVDERGWNLLHFAMASSNL-------FQLHSRLRNRSVEMLIN----   78 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~G~t~Lh~A~~~g~~-------~~~~~~~Ll~~~~~~i~----   78 (255)
                      +|+||||+|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..++.       ..+++++|+ +.|+++|    
T Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll-~~ga~~n~~~~  224 (273)
T 2pnn_A          147 FGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL-ILGAKLHPTLK  224 (273)
T ss_dssp             SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH-HHHHHHCTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH-Hhhhhcccccc
Confidence            79999999999999999999999   88888 88999999999999998861       136788888 7899997    


Q ss_pred             ---ccCCCCCchhHHHHHhhhh
Q 042220           79 ---KQDVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        79 ---~~d~~G~TpLh~A~~~~~~   97 (255)
                         .+|.+|+||||+|++.++.
T Consensus       225 ~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          225 LEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccCCCCCCHHHHHHHhChH
Confidence               4899999999999998554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.53  E-value=9.5e-15  Score=129.60  Aligned_cols=87  Identities=15%  Similarity=0.079  Sum_probs=79.7

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhC-CCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTC-PDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      +.+|. .|+||||+|+..|+.+++++|++++ .++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+
T Consensus       273 ~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~g~TpL~~A~~~g~--~~iv~~Ll-~~gad~~~~d~~g~  347 (373)
T 2fo1_E          273 DSEKY-KGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGR--IEVVMYLI-QQGASVEAVDATDH  347 (373)
T ss_dssp             SSSSC-CCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTC--HHHHHHHH-HTTCCSSCCCSSSC
T ss_pred             Ccccc-cCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCCCCCCHHHHHHHcCC--HHHHHHHH-HcCCCccCCCCCCC
Confidence            34677 8999999999999999999999987 666 8899999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|+++++.+
T Consensus       348 t~l~~A~~~g~~~  360 (373)
T 2fo1_E          348 TARQLAQANNHHN  360 (373)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHH
Confidence            9999999986653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.53  E-value=8.3e-15  Score=125.06  Aligned_cols=82  Identities=23%  Similarity=0.213  Sum_probs=77.0

Q ss_pred             eecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCch
Q 042220            8 ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTP   87 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~Tp   87 (255)
                      ..|+ .|.||||+|+..|+.++++.|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+||
T Consensus       194 ~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~--~~~v~~Ll-~~gad~~~~d~~g~t~  268 (299)
T 1s70_B          194 RHAK-SGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGK--EEACRILV-ENLCDMEAVNKVGQTA  268 (299)
T ss_dssp             CCTT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSCCT
T ss_pred             hhcC-CCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCC--HHHHHHHH-HcCCCCCCcCCCCCCH
Confidence            3556 8999999999999999999999999998 8899999999999999999  99999999 7899999999999999


Q ss_pred             hHHHHHh
Q 042220           88 LHVLAAV   94 (255)
Q Consensus        88 Lh~A~~~   94 (255)
                      ||+|.+.
T Consensus       269 l~~A~~~  275 (299)
T 1s70_B          269 FDVADED  275 (299)
T ss_dssp             TTSCCSG
T ss_pred             HHHHHHH
Confidence            9999765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.53  E-value=1.9e-14  Score=121.13  Aligned_cols=82  Identities=27%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHh-CCCcccccccCCchHHHHHHHhCC--chHHHHHHHhhhhhhhhhccCCCCCchhH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIIST-CPDCCKQVDERGWNLLHFAMASSN--LFQLHSRLRNRSVEMLINKQDVNGNTPLH   89 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~g~--~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh   89 (255)
                      .|.||||+|+..|+.+++++|+++ +.++ +.+|..|+||||+|+..++  ...+++++|+ +.|.+++.+|.+|+||||
T Consensus       147 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll-~~g~~~~~~~~~g~t~L~  224 (285)
T 1wdy_A          147 GGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLL-DHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH-HTTCCSSCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHH-HcCCCCCCcCCCCCcHHH
Confidence            445555555555555555555544 3333 4444455555555554444  1123344444 344455555555555555


Q ss_pred             HHHHhhh
Q 042220           90 VLAAVLQ   96 (255)
Q Consensus        90 ~A~~~~~   96 (255)
                      +|++.++
T Consensus       225 ~A~~~~~  231 (285)
T 1wdy_A          225 LAVEKKH  231 (285)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            5554433

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.53  E-value=1.5e-14  Score=118.92  Aligned_cols=89  Identities=18%  Similarity=0.045  Sum_probs=71.6

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|.||||+|++.|+.+++++|++++++.....+..|+||||+|+..|+  .+++++|+ +.|.+++.+|..|.
T Consensus        35 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~--~~~v~~Ll-~~g~~~~~~~~~g~  110 (240)
T 3eu9_A           35 VRQPDK-ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH--LSMVVQLM-KYGADPSLIDGEGC  110 (240)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             cCCCCC-CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC--HHHHHHHH-HcCCCCcccCCCCC
Confidence            456677 888888888888888888888888887755555668888888888888  88888888 67888888888888


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       111 t~l~~A~~~~~~~  123 (240)
T 3eu9_A          111 SCIHLAAQFGHTS  123 (240)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCHHH
Confidence            8888888876544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.52  E-value=1.8e-14  Score=124.99  Aligned_cols=85  Identities=18%  Similarity=0.128  Sum_probs=63.6

Q ss_pred             ecCCCCCcHHHHHHHc---ChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            9 SDNDQKMTALLLAAGR---GHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      .+. .|+||||+|+..   +..++++.|++.+.++ +.+|.+|+||||+|+..|+  .+++++|+ +.|+++|.+|.+|+
T Consensus       207 ~~~-~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~--~~~v~~Ll-~~ga~~n~~d~~g~  281 (351)
T 3utm_A          207 QPQ-SHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAH--NDVMEVLH-KHGAKMNALDSLGQ  281 (351)
T ss_dssp             CTT-TCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             CCC-CCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCCcCCCCC
Confidence            445 677788887777   5567777777777776 6677777788888877777  77777777 66777777777778


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       282 t~L~~A~~~~~~~  294 (351)
T 3utm_A          282 TALHRAALAGHLQ  294 (351)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCcHH
Confidence            8888877776654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.52  E-value=1.4e-14  Score=123.90  Aligned_cols=82  Identities=18%  Similarity=0.137  Sum_probs=76.8

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC-CchhHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG-NTPLHVL   91 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G-~TpLh~A   91 (255)
                      +|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+  .+++++|+ +.|++++.+|.+| +||||+|
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~--~~~v~~Ll-~~ga~~~~~~~~g~~t~L~~A  136 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGN--MQTVKLFV-KKNWRLMFYGKTGWKTSFYHA  136 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HHCGGGGGCSSSGGGSHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCC--HHHHHHHH-hcCCCCCccCCCCCCCHHHHH
Confidence            6899999999999999999999999998 7899999999999999999  99999999 6799999999999 8999999


Q ss_pred             HHhhhhc
Q 042220           92 AAVLQKE   98 (255)
Q Consensus        92 ~~~~~~~   98 (255)
                      +..++.+
T Consensus       137 ~~~~~~~  143 (285)
T 3kea_A          137 VMLNDVS  143 (285)
T ss_dssp             HHTTCHH
T ss_pred             HHcCCHH
Confidence            9987655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.51  E-value=9.1e-15  Score=129.73  Aligned_cols=86  Identities=22%  Similarity=0.118  Sum_probs=79.8

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhh---hhhhccC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE---MLINKQD   81 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~---~~i~~~d   81 (255)
                      .++.+|. +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.+   .+++.+|
T Consensus       158 ~vn~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~--~~~v~~Ll-~~~~~~~~~~~~d  232 (373)
T 2fo1_E          158 DVNAMDC-DENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRD--FGMMVYML-NSTKLKGDIEELD  232 (373)
T ss_dssp             CTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTC--HHHHHHHT-TSHHHHHTTSCCC
T ss_pred             CCcCCCC-CCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCC--HHHHHHHH-hcCccccChhhcC
Confidence            4577888 9999999999999999999999999998 7899999999999999999  99999999 555   7999999


Q ss_pred             CCCCchhHHHHHhh
Q 042220           82 VNGNTPLHVLAAVL   95 (255)
Q Consensus        82 ~~G~TpLh~A~~~~   95 (255)
                      .+|.||||+|+..+
T Consensus       233 ~~g~t~L~~A~~~~  246 (373)
T 2fo1_E          233 RNGMTALMIVAHNE  246 (373)
T ss_dssp             TTSCCHHHHHHHSC
T ss_pred             CCCCCHHHHHHHhC
Confidence            99999999999875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.51  E-value=3.2e-14  Score=116.85  Aligned_cols=86  Identities=19%  Similarity=0.166  Sum_probs=71.2

Q ss_pred             eecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC-CCCCc
Q 042220            8 ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD-VNGNT   86 (255)
Q Consensus         8 ~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d-~~G~T   86 (255)
                      ..|+ +|.||||.|++.|+.+++++|++.+.++ +.+|..|+||||+|+..|+  .+++++|+ +.+.+++..+ ..|+|
T Consensus         4 ~~d~-~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~--~~~v~~Ll-~~~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            4 HIDD-YSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNR--IDLVKYYI-SKGAIVDQLGGDLNST   78 (240)
T ss_dssp             CCSC-GGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCBTTTTBC
T ss_pred             cccc-ccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCC--HHHHHHHH-HcCCcchhhcCCcCCC
Confidence            3466 7889999999999999999999988887 7788889999999999999  99999988 6677776544 45899


Q ss_pred             hhHHHHHhhhhc
Q 042220           87 PLHVLAAVLQKE   98 (255)
Q Consensus        87 pLh~A~~~~~~~   98 (255)
                      |||+|++.++.+
T Consensus        79 ~L~~A~~~~~~~   90 (240)
T 3eu9_A           79 PLHWATRQGHLS   90 (240)
T ss_dssp             HHHHHHHHTCHH
T ss_pred             hhHHHHHcCCHH
Confidence            999999886654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.49  E-value=1.6e-14  Score=106.39  Aligned_cols=79  Identities=18%  Similarity=0.191  Sum_probs=71.7

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|. .|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.|+++|.+|..|
T Consensus        34 ~~~~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~~~~~--~~~~~~Ll-~~ga~~n~~~~~~  108 (115)
T 2l6b_A           34 DVNARSK-DGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGH--HEIVKLLD-AKGADVNARSWGS  108 (115)
T ss_dssp             CSSCCCS-SSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHHTTTC--HHHHHHHH-TTSSSHHHHSCCC
T ss_pred             CCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHCCC--HHHHHHHH-HcCCCCCcCCccc
Confidence            3567788 9999999999999999999999999998 8899999999999999999  99999999 7899999999999


Q ss_pred             Cchh
Q 042220           85 NTPL   88 (255)
Q Consensus        85 ~TpL   88 (255)
                      .+|-
T Consensus       109 ~~~~  112 (115)
T 2l6b_A          109 SHHH  112 (115)
T ss_dssp             C---
T ss_pred             cccc
Confidence            9983

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.48  E-value=3.7e-14  Score=122.62  Aligned_cols=82  Identities=18%  Similarity=0.057  Sum_probs=68.1

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      .++.+|. +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..++  .+++++|+ +.+.+      .|
T Consensus       218 dvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~--~~iv~~Ll-~~ga~------~g  286 (301)
T 2b0o_E          218 HLDAKAA-DGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHH--KECEELLE-QAQAG------TF  286 (301)
T ss_dssp             CTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTC--HHHHHHHH-HHHHH------TT
T ss_pred             CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCC--HHHHHHHH-HhcCC------CC
Confidence            3577888 9999999999999999999999999998 8899999999999999999  99999998 66665      68


Q ss_pred             CchhHHHHHhhhh
Q 042220           85 NTPLHVLAAVLQK   97 (255)
Q Consensus        85 ~TpLh~A~~~~~~   97 (255)
                      .||||+|++.++.
T Consensus       287 ~tpLh~A~~~g~~  299 (301)
T 2b0o_E          287 AFPLHVDYSWVIS  299 (301)
T ss_dssp             SSCCC--------
T ss_pred             CChhHHHHhcCCc
Confidence            9999999998764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.44  E-value=1.7e-13  Score=97.10  Aligned_cols=66  Identities=26%  Similarity=0.307  Sum_probs=60.9

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhh
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM   75 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~   75 (255)
                      .++.+|+ +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|+
T Consensus        27 ~~n~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~--~~~~~~Ll-~~ga   92 (93)
T 1n0q_A           27 DVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGH--LEVVKLLL-EAGA   92 (93)
T ss_dssp             CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTC
T ss_pred             CCcccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCC--HHHHHHHH-HcCC
Confidence            3577888 9999999999999999999999999998 8899999999999999999  99999998 5554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.42  E-value=2.9e-13  Score=117.81  Aligned_cols=90  Identities=24%  Similarity=0.243  Sum_probs=70.5

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHh-CCCcccccccCCchHHHHHHHhCC--chHHHHHHHhhhhhhhhhccCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIIST-CPDCCKQVDERGWNLLHFAMASSN--LFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~g~--~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      ....++ .|+||||+|+++|+.+++++|+++ +.++ +.+|..|+|++|.++..++  ...+++++|+ +.|+++|.+|.
T Consensus       161 ~~~~~~-~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl-~~gad~n~~d~  237 (337)
T 4g8k_A          161 QERLRK-GGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLL-DHGADVNVRGE  237 (337)
T ss_dssp             ---CTT-CSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHH-HTTCCTTCCCG
T ss_pred             cccccC-CCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHH-HCCCCCCCcCC
Confidence            345667 899999999999999999999975 6676 7888889999988877654  1234667777 77888999998


Q ss_pred             CCCchhHHHHHhhhhc
Q 042220           83 NGNTPLHVLAAVLQKE   98 (255)
Q Consensus        83 ~G~TpLh~A~~~~~~~   98 (255)
                      +|+||||+|++.++.+
T Consensus       238 ~g~t~L~~a~~~~~~~  253 (337)
T 4g8k_A          238 RGKTPLILAVEKKHLG  253 (337)
T ss_dssp             GGCCHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHhhhhH
Confidence            9999999998886654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.40  E-value=6e-13  Score=115.76  Aligned_cols=82  Identities=20%  Similarity=0.205  Sum_probs=66.0

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCccccccc-CCchHHHHHHHhCCchHHHHHHHhhhhhhh---------------
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDE-RGWNLLHFAMASSNLFQLHSRLRNRSVEML---------------   76 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~---------------   76 (255)
                      +|.||||.|+++|+.++++.|+++++++ +.+|. .|+||||+|+..|+  .+++++|+ +.|++               
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadv-n~~~~~~g~TpLh~A~~~g~--~~iv~~Ll-~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSR--EDIVELLL-RHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcCHHHHHHHcCC--HHHHHHHH-HcCCchhhhccCCCchhHHH
Confidence            5789999999999999999999999998 65654 59999999999999  99999998 55554               


Q ss_pred             ------------------hhccCCCCCchhHHHHHhhhhc
Q 042220           77 ------------------INKQDVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        77 ------------------i~~~d~~G~TpLh~A~~~~~~~   98 (255)
                                        ++.+|.+|.||||+|+..++.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~  139 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK  139 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHH
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHH
Confidence                              4455666777777777665443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.39  E-value=2.4e-13  Score=120.77  Aligned_cols=82  Identities=18%  Similarity=0.202  Sum_probs=75.4

Q ss_pred             CCCcHHHHHHHc-ChHHHHHHHHHhCCCcccccc--cCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhH
Q 042220           13 QKMTALLLAAGR-GHIRVVNEIISTCPDCCKQVD--ERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLH   89 (255)
Q Consensus        13 ~G~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh   89 (255)
                      .+.|+||.|+.. |+.++++.|+++++++ +.+|  ..|+||||+|+..|+  .+++++|+ +.|+++|.+|.+|+||||
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~--~~iv~~LL-~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANS--LLACEFLL-QNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCC--HHHHHHHH-HcCCCCCCCCCCCCCHHH
Confidence            456899999999 9999999999999998 6777  889999999999999  99999999 789999999999999999


Q ss_pred             HHHHhhhhc
Q 042220           90 VLAAVLQKE   98 (255)
Q Consensus        90 ~A~~~~~~~   98 (255)
                      +|+..++.+
T Consensus       274 ~A~~~g~~~  282 (368)
T 3jue_A          274 HATILGHTG  282 (368)
T ss_dssp             HHHHHTCHH
T ss_pred             HHHHcCcHH
Confidence            999986653

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.33  E-value=3.6e-12  Score=117.37  Aligned_cols=81  Identities=20%  Similarity=0.127  Sum_probs=73.4

Q ss_pred             CCcHHHHHHHcChHHHHHHHHHhCCCccccc------ccCCchHHHHHHH---hCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220           14 KMTALLLAAGRGHIRVVNEIISTCPDCCKQV------DERGWNLLHFAMA---SSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus        14 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~G~t~Lh~A~~---~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      ..+.||.|+..|+.+.++.|++.++++ +.+      |..|+||||+|+.   .|+  .+++++|+ +.|+++|.+|.+|
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~--~~~v~~Ll-~~ga~vn~~d~~g  207 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQAS--LPLVDFII-QNGGHLDAKAADG  207 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTT--HHHHHHHH-HHSCCTTCCCSSS
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhccccc--HHHHHHHH-HcCCCCCccCCCC
Confidence            346799999999999999999999997 555      8899999999976   888  99999999 7899999999999


Q ss_pred             CchhHHHHHhhhhc
Q 042220           85 NTPLHVLAAVLQKE   98 (255)
Q Consensus        85 ~TpLh~A~~~~~~~   98 (255)
                      +||||+|+..++.+
T Consensus       208 ~TpLh~A~~~g~~~  221 (497)
T 3lvq_E          208 NTALHYAALYNQPD  221 (497)
T ss_dssp             CCHHHHHTTTTCHH
T ss_pred             CcHHHHHHHcCCHH
Confidence            99999999997654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.32  E-value=7.7e-12  Score=106.77  Aligned_cols=80  Identities=19%  Similarity=0.084  Sum_probs=72.1

Q ss_pred             CcHHHHHHHcChHHHHHHHHHhCCCcc-----cccccCCchHHHHHHHh---CCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220           15 MTALLLAAGRGHIRVVNEIISTCPDCC-----KQVDERGWNLLHFAMAS---SNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus        15 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~G~t~Lh~A~~~---g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      .++||.|++.|+.+.++.+++.+++..     +..|..|+||||+|+..   ++  .+++++|+ +.|+++|.+|.+|+|
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~--~~~v~~Ll-~~ga~in~~d~~g~T  207 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS--LHIVDFLV-QNSGNLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT--HHHHHHHH-HHCSCTTCCCTTCCC
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccch--HHHHHHHH-HCCCCccccCCCCCC
Confidence            468999999999999999999999852     34588999999999999   88  99999999 789999999999999


Q ss_pred             hhHHHHHhhhh
Q 042220           87 PLHVLAAVLQK   97 (255)
Q Consensus        87 pLh~A~~~~~~   97 (255)
                      |||+|+..++.
T Consensus       208 pLh~A~~~g~~  218 (278)
T 1dcq_A          208 ALHYCCLTDNA  218 (278)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHcCCH
Confidence            99999998554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.32  E-value=1.4e-13  Score=122.58  Aligned_cols=85  Identities=14%  Similarity=0.122  Sum_probs=65.2

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcc--cccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhc--cCCCC
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCC--KQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINK--QDVNG   84 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~--~d~~G   84 (255)
                      .|. .|.||||+|+++|+.+++++|++++++..  +..+.+ +||||+|+.+|+  .+++++|+ +.|++++.  +|.+|
T Consensus       124 ~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~--~eiv~~Ll-~~ga~~~~~~~d~~g  198 (376)
T 2aja_A          124 IQA-ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGH--LHVLNRLC-ELAPTEATAMIQAEN  198 (376)
T ss_dssp             -CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTC--HHHHHHHH-HSCGGGHHHHHHHHH
T ss_pred             hcc-CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCC--HHHHHHHH-HcCCccchhccCCCC
Confidence            344 57788888888888888888888887521  222233 888888888888  88888888 67888777  88888


Q ss_pred             CchhHHHH-Hhhhhc
Q 042220           85 NTPLHVLA-AVLQKE   98 (255)
Q Consensus        85 ~TpLh~A~-~~~~~~   98 (255)
                      .||||+|+ +.|+.+
T Consensus       199 ~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          199 YYAFRWAAVGRGHHN  213 (376)
T ss_dssp             HHHHHHHHSTTCCHH
T ss_pred             CCHHHHHHHHCCCHH
Confidence            88888888 887765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.21  E-value=2.5e-11  Score=88.75  Aligned_cols=61  Identities=23%  Similarity=0.322  Sum_probs=56.4

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHH
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLR   69 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~L   69 (255)
                      .++.+|. .|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|
T Consensus        49 ~i~~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~--~~~~~~L  109 (110)
T 2zgd_A           49 DVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNGN--EDLAEIL  109 (110)
T ss_dssp             CTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHH
T ss_pred             CCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHHHHcCC--HHHHHHh
Confidence            3567888 9999999999999999999999999998 8899999999999999999  9998875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.20  E-value=4.6e-12  Score=112.86  Aligned_cols=83  Identities=8%  Similarity=0.055  Sum_probs=66.0

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhCCCc--ccccccCCchHHHHHHHhCCchHHHHHHHhhhhhh-----hhhccC
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTCPDC--CKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEM-----LINKQD   81 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~-----~i~~~d   81 (255)
                      ++. +++||||+|++.|+.+++++|+++++..  .+..|.+|+||||+|+.+|+  .+++++|+ +.|+     +++.+|
T Consensus        88 ~g~-~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~--~eiv~~Ll-~~gad~~~~~i~~~~  163 (376)
T 2aja_A           88 KGI-KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH--LHVLNRLC-ELAPTEIMAMIQAEN  163 (376)
T ss_dssp             HTC-CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC--HHHHHHHH-HSCTTTHHHHHSHHH
T ss_pred             cCC-CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC--HHHHHHHH-hCCCCccccccCCCC
Confidence            445 6789999999999999999999988632  12456789999999999999  99999999 6674     344444


Q ss_pred             CCCCchhHHHHHhhhhc
Q 042220           82 VNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        82 ~~G~TpLh~A~~~~~~~   98 (255)
                         .||||+|++.|+.+
T Consensus       164 ---~TpLh~Aa~~G~~e  177 (376)
T 2aja_A          164 ---YHAFRLAAENGHLH  177 (376)
T ss_dssp             ---HHHHHHHHHTTCHH
T ss_pred             ---CCHHHHHHHCCCHH
Confidence               89999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.002
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.004
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 16/84 (19%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE 74
          +T L +A+  GH+ +V  ++          + +    LH A  + +             +
Sbjct: 1  LTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHT---------EVAK 50

Query: 75 MLI------NKQDVNGNTPLHVLA 92
           L+      N +  +  TPLH  A
Sbjct: 51 YLLQNKAKVNAKAKDDQTPLHCAA 74

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 1   YDKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSN 60
            +K A+      +  T L +AA  G +RV   ++           + G   LH A+  +N
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNN 177

Query: 61  LFQLHSRLRNRSVEMLINKQDVNGNTPLHV 90
           L  +   L  R      +    NG TPLH+
Sbjct: 178 L-DIVKLLLPRGGS--PHSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 2   DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL 61
                  +      T L +A+  G+I++V + +           + G++ LH A    + 
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 62  FQLHSRLRNRSVEMLI------NKQDVNGNTPLHVLA 92
                      V +L+      N+   +G TPL +  
Sbjct: 344 ---------DIVTLLLKNGASPNEVSSDGTTPLAIAK 371

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 7   CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHS 66
             +++ Q +T L LAA  GH  +V  ++ +        ++ G   LH      ++  +  
Sbjct: 224 ANAESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHV-PVAD 281

Query: 67  RLRNRSVEMLINKQDVNGNTPLHV 90
            L    V   ++     G TPLHV
Sbjct: 282 VLIKHGVM--VDATTRMGYTPLHV 303

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 11 NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL 61
          N +  T L +AA  GH  V   ++        +  +     LH A    + 
Sbjct: 30 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHT 79

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN 70
           N   +T L L A  GH+ V + +I              +  LH A    N+  +      
Sbjct: 261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-YTPLHVASHYGNIKLVK---FL 316

Query: 71  RSVEMLINKQDVNGNTPLHVLAA 93
              +  +N +   G +PLH  A 
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQ 339

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERG---WNLLHFAMASSNLFQLHSR 67
                TAL+ AA +GH+ V+  ++          D  G         +   S++  +   
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 68  LRNRSVEMLINKQDVNGNTPLH 89
           L +   +  +N +   G TPL 
Sbjct: 205 LLDHGAD--VNVRGERGKTPLI 224

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 6  ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNL 61
          A + DN      L+ A     + +V +++    +   Q +E GW  LH A+  S  
Sbjct: 1  AAVEDN----HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE 52

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 9   SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRL 68
           S+  +  TAL  AA   ++ +V  ++        + DE G   +  A     +       
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI------- 234

Query: 69  RNRSVEMLI------NKQDVNGNTPLHVLAA 93
               V  LI         D   +T    LA 
Sbjct: 235 --EVVMYLIQQGASVEAVDATDHTARQ-LAQ 262

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 13/95 (13%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQ------------VDERGWNLLHFAMAS 58
           +    T L        +   +       D                      +  +     
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 59  SNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAA 93
                L +      +  ++N QD NG+T L+ +AA
Sbjct: 234 RKDSILENLDLKWIIANMLNAQDSNGDTCLN-IAA 267

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 12  DQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNR 71
           +   T L       ++ +V  ++    +     D  G + L  A+ S N +   +     
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 72  SV-EMLINKQDVNGNTPLHVLA 92
                 +  +D    T LH + 
Sbjct: 164 DYLYPCLILEDSMNRTILHHII 185

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 7e-05
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 28/118 (23%)

Query: 8   ISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSR 67
           +       TAL +AA +G+  V+  +I    D   +  + GW  LH A            
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD-GWTPLHAAAHWGKE------ 245

Query: 68  LRNRSVEMLI------NKQDVNGNTPLHVLAAVLQKEKTAVEE--GEIKELKPRHTIV 117
               +  +L+         +  G T   V          A E+  G ++EL+ +  ++
Sbjct: 246 ---EACRILVENLCDMEAVNKVGQTAFDV----------ADEDILGYLEELQKKQNLL 290

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 9e-05
 Identities = 10/50 (20%), Positives = 18/50 (36%)

Query: 16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLH 65
            L  A        V E++ + P    Q D+ G   LH++++        
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITS 51

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 11/101 (10%), Positives = 28/101 (27%), Gaps = 3/101 (2%)

Query: 2   DKSAACISDNDQKMTALLLAAGRGHIRVVN--EIISTCPDCCKQVDERGWNLLHFAMASS 59
              +       +      +AA  G    ++   ++ T  +  K +    +     A  + 
Sbjct: 78  QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 137

Query: 60  NLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKEKT 100
           +L  L+ RL   +   ++            + A        
Sbjct: 138 HLHVLN-RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 177

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQ-VDERGWNLLHFAMASSNLFQLHSRLR 69
             +   A  LAA  GH+ V+N +    P      +    ++    A  + +L  L+    
Sbjct: 123 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 182

Query: 70  NRSVEMLINKQDVNGNTPLH 89
               E     Q  N      
Sbjct: 183 LAPTEATAMIQAENYYAFRW 202

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 44 VDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA 92
          V E G   LH A+   +   L   L   +    ++ Q+  G T LH+ A
Sbjct: 5  VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCK--QVDERGWNLLHFAMASSNLFQLH 65
           TAL LA    H   ++ ++            ++ G   LH A        + 
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCKQV---DERGWNLLHFAM 56
           T L +A  +G++  V+ +++      +++   +      LH A+
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 48

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 35/116 (30%)

Query: 7   CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFA----------- 55
           C+S+       +   A  G +  + E I        + D+     LH+A           
Sbjct: 1   CVSN-----LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF 55

Query: 56  -------------MASSNLFQLHSRLRNRSVEMLI------NKQDVNGNTPLHVLA 92
                           S L    S  R+  V+ L+      N  + NG TPLH  A
Sbjct: 56  LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 111

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 31/110 (28%)

Query: 11  NDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMAS------------ 58
           N    T L  AA +    +   ++    +   + D      +H A A             
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYY 158

Query: 59  ------------SNLFQLHSRLRNRSVEMLI------NKQDVNGNTPLHV 90
                       + L       R    ++L+        ++    TPL V
Sbjct: 159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDER---GWNLLHFAM 56
           + L LA       +  E+I         ++ +       LH A+
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.73
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.73
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.71
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.67
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.65
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.64
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.61
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.61
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.6
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.6
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.59
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.56
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.53
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.53
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.51
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.5
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.5
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.5
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.48
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.48
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.48
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.46
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.45
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.43
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.42
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.4
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.39
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.37
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.35
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.34
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.32
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.28

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.3e-18  Score=132.22  Aligned_cols=84  Identities=19%  Similarity=0.272  Sum_probs=77.3

Q ss_pred             ecCCCCCcHHHHHHHc---ChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            9 SDNDQKMTALLLAAGR---GHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      .+. .|+||||+|++.   |+.+++++|+++++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+
T Consensus        41 ~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~--~~~v~~Ll-~~gad~~~~d~~g~  115 (154)
T d1dcqa1          41 GHE-PDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDN--AECLKLLL-RGKASIEIANESGE  115 (154)
T ss_dssp             CSS-TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             CCC-CCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccccccccc--cccccccc-ccCccccccCCCCC
Confidence            355 799999999974   6789999999999998 8899999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhh
Q 042220           86 TPLHVLAAVLQK   97 (255)
Q Consensus        86 TpLh~A~~~~~~   97 (255)
                      ||||+|++.++.
T Consensus       116 tpL~~A~~~~~~  127 (154)
T d1dcqa1         116 TPLDIAKRLKHE  127 (154)
T ss_dssp             CHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCH
Confidence            999999998554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=7e-19  Score=129.89  Aligned_cols=80  Identities=16%  Similarity=0.069  Sum_probs=43.9

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +.+|+ +|+||||+|+..|+.+++++++++++++ +.+|.+|+||||+|+.+|+  .+++++|+ +.|++++.+|.+|+|
T Consensus        29 n~~~~-~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~--~~~v~~Ll-~~Gad~~~~d~~G~t  103 (118)
T d1myoa_          29 NRTLE-GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGH--VSCVKLLL-SKGADKTVKGPDGLT  103 (118)
T ss_dssp             CCCSS-SSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTC--CHHHHHHH-TTCCCSSSSSSSTCC
T ss_pred             ccccc-ccccccccccccccccccccccccccee-eecccccccchhhhhhcCc--hhhhhhhh-cccccceeeCCCCCC
Confidence            44455 5555555555555555555555555554 4455555555555555555  55555555 445555555555555


Q ss_pred             hhHHH
Q 042220           87 PLHVL   91 (255)
Q Consensus        87 pLh~A   91 (255)
                      |||+|
T Consensus       104 ~l~~a  108 (118)
T d1myoa_         104 ALEAT  108 (118)
T ss_dssp             CCCTC
T ss_pred             HHHHH
Confidence            55554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.4e-17  Score=122.73  Aligned_cols=78  Identities=19%  Similarity=0.144  Sum_probs=73.8

Q ss_pred             CcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHh
Q 042220           15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        15 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~   94 (255)
                      .|||++|+++|+.++++.|+++++++ +.+|.+|+||||+|+..|+  .+++++++ +.|.++|.+|.+|+||||+|+++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~--~~~~~~ll-~~g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQ--LEILEFLL-LKGADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHST--TTHHHHHH-HSSCTTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccc--cccccccc-cccceeeecccccccchhhhhhc
Confidence            48999999999999999999999998 8899999999999999999  99999998 78999999999999999999998


Q ss_pred             hh
Q 042220           95 LQ   96 (255)
Q Consensus        95 ~~   96 (255)
                      ++
T Consensus        79 ~~   80 (118)
T d1myoa_          79 GH   80 (118)
T ss_dssp             TC
T ss_pred             Cc
Confidence            43

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.5e-16  Score=130.96  Aligned_cols=87  Identities=17%  Similarity=0.059  Sum_probs=80.3

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. +|+||||+|+++|+.+++++|++.+++....++..|+||||+|++.++  .+++++|+ +.|++++.+|.+|+
T Consensus       151 in~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~--~~~v~~Ll-~~gadin~~d~~g~  226 (255)
T d1oy3d_         151 LEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA--ASVLELLL-KAGADPTARMYGGR  226 (255)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             cccccc-cCcccccccccccccccccchhcccccccccccccccccccccccccH--HHHHHHHH-HCCCCCCCCCCCCC
Confidence            466788 999999999999999999999999999866678889999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhh
Q 042220           86 TPLHVLAAVLQ   96 (255)
Q Consensus        86 TpLh~A~~~~~   96 (255)
                      ||||+|++.++
T Consensus       227 t~L~~A~~~~~  237 (255)
T d1oy3d_         227 TPLGSALLRPN  237 (255)
T ss_dssp             CHHHHHHTSSC
T ss_pred             CHHHHHHHCCC
Confidence            99999999843

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.4e-17  Score=121.54  Aligned_cols=77  Identities=25%  Similarity=0.306  Sum_probs=60.3

Q ss_pred             cHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhh
Q 042220           16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVL   95 (255)
Q Consensus        16 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~   95 (255)
                      ++||.|+..|+.++++.|+++++++ +.+|.+|+||||+|+..++  .+++++++ +.|.++|.+|.+|+||||+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~--~~~~~~ll-~~g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGH--TEIVKFLV-QFGVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTC--HHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccc--cccccccc-ccccccccccccCcccccccchhh
Confidence            5677788888888888888887776 6778888888888888888  88888777 667788888888888888888773


Q ss_pred             h
Q 042220           96 Q   96 (255)
Q Consensus        96 ~   96 (255)
                      +
T Consensus        79 ~   79 (130)
T d1ycsb1          79 N   79 (130)
T ss_dssp             C
T ss_pred             H
Confidence            3

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8.6e-17  Score=132.35  Aligned_cols=86  Identities=17%  Similarity=0.130  Sum_probs=77.4

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhCCCc--ccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTCPDC--CKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      -|+ +|+||||+|+++|+.+++++|++++++.  .+.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+|
T Consensus         5 i~~-~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~--~~iv~~Ll-~~ga~i~~~d~~g~t   80 (255)
T d1oy3d_           5 VTE-DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE--ASTVEKLY-AAGAGVLVAERGGHT   80 (255)
T ss_dssp             CCT-TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCSSCCCTTSCC
T ss_pred             CCc-CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcc--cccccccc-cccccccccccccch
Confidence            356 8999999999999999999999987663  35788999999999999999  99999999 789999999999999


Q ss_pred             hhHHHHHhhhhc
Q 042220           87 PLHVLAAVLQKE   98 (255)
Q Consensus        87 pLh~A~~~~~~~   98 (255)
                      |||+|+..++.+
T Consensus        81 pL~~A~~~~~~~   92 (255)
T d1oy3d_          81 ALHLACRVRAHT   92 (255)
T ss_dssp             HHHHHTTTTCHH
T ss_pred             hhhhhhccCchH
Confidence            999999876543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-16  Score=118.62  Aligned_cols=82  Identities=18%  Similarity=0.253  Sum_probs=75.5

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC-CC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV-NG   84 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~-~G   84 (255)
                      ++.+|+ +|+||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+  .+++++|+ +.|++++.+|. +|
T Consensus        27 ~n~~d~-~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~--~~~v~~Ll-~~ga~v~~~~~~~~  101 (130)
T d1ycsb1          27 PSLPND-EGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN--VQVCKFLV-ESGAAVFAMTYSDM  101 (130)
T ss_dssp             CCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCSSSC
T ss_pred             cccccc-cccccccccccccccccccccccccccc-ccccccCcccccccchhhH--HHHHHHHH-HcCCCcccccCCCC
Confidence            578899 9999999999999999999999999998 8899999999999999999  99999999 78999998875 58


Q ss_pred             CchhHHHH
Q 042220           85 NTPLHVLA   92 (255)
Q Consensus        85 ~TpLh~A~   92 (255)
                      +||++++.
T Consensus       102 ~~~~~~~~  109 (130)
T d1ycsb1         102 QTAADKCE  109 (130)
T ss_dssp             CCHHHHCC
T ss_pred             CCHHHHHH
Confidence            89987764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.4e-17  Score=120.70  Aligned_cols=86  Identities=10%  Similarity=0.070  Sum_probs=67.7

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCc-hHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGW-NLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNG   84 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G   84 (255)
                      ++.+|+ +|+||+|.| ..|+.+++++|+++++++ +.+|..|. ||||+|+++|+  .+++++|+ +.|++++.+|.+|
T Consensus        29 ~n~~~~-~g~t~l~~a-~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g~--~~~v~~Ll-~~ga~~~~~d~~G  102 (125)
T d1bi7b_          29 PNAPNS-YGRRPIQVM-MMGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGF--LDTLVVLH-RAGARLDVRDAWG  102 (125)
T ss_dssp             TTCCCS-SSCCTTTSS-CTTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTC--HHHHHHHH-HHTCCSSCCCTTC
T ss_pred             cccccc-ccccccccc-cccccccccccccccccc-cccccccccccccccccccc--cccccccc-ccccccccccCCC
Confidence            456777 888888865 468888888888888887 66677655 58888888888  88888888 6788888888888


Q ss_pred             CchhHHHHHhhhh
Q 042220           85 NTPLHVLAAVLQK   97 (255)
Q Consensus        85 ~TpLh~A~~~~~~   97 (255)
                      +||||+|+++++.
T Consensus       103 ~T~l~~A~~~g~~  115 (125)
T d1bi7b_         103 RLPVDLAEELGHR  115 (125)
T ss_dssp             CCHHHHHHHHTCH
T ss_pred             CCHHHHHHHcCCH
Confidence            8888888887654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.8e-16  Score=126.86  Aligned_cols=91  Identities=29%  Similarity=0.372  Sum_probs=66.0

Q ss_pred             CCCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC
Q 042220            2 DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD   81 (255)
Q Consensus         2 d~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d   81 (255)
                      ++..++.+|+ +|+||||+|+..|+.++++++++...+. ...+..+.++++.++..++  .+++++|+ +.+.+++.+|
T Consensus        26 ~~~~~~~~D~-~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~i~~~Ll-~~~~d~~~~d  100 (223)
T d1uoha_          26 DKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGR--DEIVKALL-GKGAQVNAVN  100 (223)
T ss_dssp             CGGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCC
T ss_pred             CCCcCcCcCC-CCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccc--cchhHHHh-ccCceeEeeC
Confidence            4677889999 9999999999999999999888887665 4455556666666666666  66666666 4556666666


Q ss_pred             CCCCchhHHHHHhhhh
Q 042220           82 VNGNTPLHVLAAVLQK   97 (255)
Q Consensus        82 ~~G~TpLh~A~~~~~~   97 (255)
                      .+|+||||+|+.+++.
T Consensus       101 ~~g~tpL~~A~~~~~~  116 (223)
T d1uoha_         101 QNGCTPLHYAASKNRH  116 (223)
T ss_dssp             TTCCCHHHHHHHHTCH
T ss_pred             CCCCchhhHHHHcCCH
Confidence            6666666666665443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.61  E-value=1.2e-16  Score=132.65  Aligned_cols=89  Identities=16%  Similarity=0.071  Sum_probs=77.8

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHH--------HHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhh
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEI--------ISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEML   76 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~L--------l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~   76 (255)
                      .++..|.++|+||||+||.+|+.++++.|        ++.|+++ +.+|.+|+||||+|+.+|+  .+++++|+ +.|++
T Consensus        24 ~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~--~~iv~~Ll-~~Gad   99 (277)
T d2fo1e1          24 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARR--RRLVAYLM-KAGAD   99 (277)
T ss_dssp             TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCC
T ss_pred             CCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeecccccccc--cccccccc-ccccc
Confidence            45556643799999999999999888776        4557787 7899999999999999999  99999999 78999


Q ss_pred             hhccCCCCCchhHHHHHhhhh
Q 042220           77 INKQDVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        77 i~~~d~~G~TpLh~A~~~~~~   97 (255)
                      ++.+|.+|+||||+|...++.
T Consensus       100 ~n~~~~~g~t~l~~a~~~~~~  120 (277)
T d2fo1e1         100 PTIYNKSERSALHQAAANRDF  120 (277)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCH
T ss_pred             cccccccccccccchhhhcch
Confidence            999999999999999988654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=9.1e-16  Score=122.37  Aligned_cols=87  Identities=20%  Similarity=0.104  Sum_probs=81.7

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|. .|+||||+++.+|..++++.+++.+.+. +.+|.+|+||||+|+..|+  .++++.|+ +.|++++.+|.+|+
T Consensus       116 ~~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~--~~~v~~Ll-~~gad~n~~d~~g~  190 (209)
T d1ot8a_         116 INAADN-SGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGS--YEASKALL-DNFANREITDHMDR  190 (209)
T ss_dssp             TTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             ccccCC-CCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccH--HHHHHHHH-HCCCCCCCcCCCCC
Confidence            466788 9999999999999999999999999988 8899999999999999999  99999999 78999999999999


Q ss_pred             chhHHHHHhhhh
Q 042220           86 TPLHVLAAVLQK   97 (255)
Q Consensus        86 TpLh~A~~~~~~   97 (255)
                      ||||+|++++|.
T Consensus       191 Tpl~~A~~~~~~  202 (209)
T d1ot8a_         191 LPRDVASERLHH  202 (209)
T ss_dssp             CHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCH
Confidence            999999999775

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=6.2e-16  Score=125.09  Aligned_cols=86  Identities=19%  Similarity=0.196  Sum_probs=78.2

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      .+.+|. +|+||||+|+..|+.++++.|++.++...+.+|.+|+||||+|+.+|+  .+++++|+++.|++++.+|.+|+
T Consensus       131 ~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~--~~~v~~Ll~~~gad~~~~d~~g~  207 (229)
T d1ixva_         131 VRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH--GDAAVLLVEKYGAEYDLVDNKGA  207 (229)
T ss_dssp             SCCCCT-TSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHCCCSCCCCTTSC
T ss_pred             ccccCC-CCCCccchhhhcccccccccccccccccccccccccCCchhhhccccc--HHHHHHHHHhcCCCCCCcCCCCC
Confidence            455677 899999999999999999999999876668899999999999999999  99999999667999999999999


Q ss_pred             chhHHHHHh
Q 042220           86 TPLHVLAAV   94 (255)
Q Consensus        86 TpLh~A~~~   94 (255)
                      ||||+|+..
T Consensus       208 t~l~~A~~~  216 (229)
T d1ixva_         208 KAEDVALNE  216 (229)
T ss_dssp             CTGGGCSCH
T ss_pred             CHHHHHhhH
Confidence            999999864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.9e-15  Score=122.62  Aligned_cols=88  Identities=22%  Similarity=0.185  Sum_probs=75.2

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|+||||+|+.+|+.+++++|++++.++ +.+|..|.||||+|+..++  .+..+++. +.+.+++.+|.+|+
T Consensus        96 ~~~~d~-~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~--~~~~~~L~-~~~~~i~~~d~~g~  170 (223)
T d1uoha_          96 VNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGN--LKMIHILL-YYKASTNIQDTEGN  170 (223)
T ss_dssp             TTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCSCCCCTTCC
T ss_pred             eEeeCC-CCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCC--cchhhhhc-cccceeeeccCCCC
Confidence            466788 8999999999999999999999988887 7788889999999999988  88888877 67888888999999


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      ||||+|++.++.+
T Consensus       171 TpL~~Aa~~g~~~  183 (223)
T d1uoha_         171 TPLHLACDEERVE  183 (223)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             ceeccccccCcHH
Confidence            9999998886544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=1.5e-15  Score=127.12  Aligned_cols=83  Identities=23%  Similarity=0.211  Sum_probs=77.3

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      ...+. +|.||||.|+..|+.++++.|++.++++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+|
T Consensus       193 ~~~~~-~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~--~~iv~lLl-~~Gadv~~~d~~G~T  267 (291)
T d1s70b_         193 VRHAK-SGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGK--EEACRILV-ENLCDMEAVNKVGQT  267 (291)
T ss_dssp             CCCTT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSCC
T ss_pred             ccccC-CCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCCcCCCCCC
Confidence            34566 8999999999999999999999999998 8899999999999999999  99999999 789999999999999


Q ss_pred             hhHHHHHh
Q 042220           87 PLHVLAAV   94 (255)
Q Consensus        87 pLh~A~~~   94 (255)
                      |||+|++.
T Consensus       268 aL~~A~e~  275 (291)
T d1s70b_         268 AFDVADED  275 (291)
T ss_dssp             TTTSCCSG
T ss_pred             HHHHHHHH
Confidence            99999763

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.9e-15  Score=130.69  Aligned_cols=80  Identities=19%  Similarity=0.244  Sum_probs=75.4

Q ss_pred             CcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHh
Q 042220           15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAV   94 (255)
Q Consensus        15 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~   94 (255)
                      .||||+||..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+  .+++++|+ +.|++++.+|.+|+||||+|++.
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~i-n~~d~~g~TpL~~A~~~g~--~~iv~~Ll-~~gadi~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGH--TEVAKYLL-QNKAKVNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTC--HHHHHHHH-HHTCCSSCCCTTSCCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC--HHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHc
Confidence            49999999999999999999999998 8899999999999999999  99999999 78999999999999999999988


Q ss_pred             hhhc
Q 042220           95 LQKE   98 (255)
Q Consensus        95 ~~~~   98 (255)
                      ++.+
T Consensus        77 g~~~   80 (408)
T d1n11a_          77 GHTN   80 (408)
T ss_dssp             TCHH
T ss_pred             CCHH
Confidence            6554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.5e-15  Score=111.89  Aligned_cols=89  Identities=16%  Similarity=0.079  Sum_probs=56.6

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCC
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVN   83 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~   83 (255)
                      ..++.+|. +|+||||+|+ .|+.+++++|++++.++ +.++.+|++|++.++..++  .++.+.++ +.+.++|.+|++
T Consensus        27 ~~~n~~d~-~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~--~~~~~~~l-~~~~~~n~~~~~  100 (156)
T d1bd8a_          27 VHPDALNR-FGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF--LDTLKVLV-EHGADVNVPDGT  100 (156)
T ss_dssp             CCTTCCCT-TSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCSCCCCTT
T ss_pred             CCCCccCC-CCCccccccc-ccccccccccccccccc-ccccccccccccccccccc--cccccccc-ccccccccccCC
Confidence            34556666 6777777664 35666677777666665 5556666666666666666  66666665 456666666666


Q ss_pred             CCchhHHHHHhhhhc
Q 042220           84 GNTPLHVLAAVLQKE   98 (255)
Q Consensus        84 G~TpLh~A~~~~~~~   98 (255)
                      |+||||+|++.++.+
T Consensus       101 ~~t~L~~A~~~~~~~  115 (156)
T d1bd8a_         101 GALPIHLAVQEGHTA  115 (156)
T ss_dssp             SCCHHHHHHHHTCHH
T ss_pred             CCeeecccccccccc
Confidence            666666666665543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.9e-15  Score=112.09  Aligned_cols=80  Identities=18%  Similarity=0.084  Sum_probs=72.5

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC-chhHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN-TPLHVL   91 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~-TpLh~A   91 (255)
                      .+.++||+|+++|+.++++.|+++++++ +.+|..|+||+|.|+ .|+  .+++++|+ +.|++++.+|..|. ||||+|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~--~~~v~~Ll-~~ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGS--ARVAELLL-LHGAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTC--HHHHHHHH-TTTCCCCCCCTTTCCCHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccc--cccccccc-ccccccccccccccccccccc
Confidence            5679999999999999999999999998 889999999999775 789  99999999 78999999999876 699999


Q ss_pred             HHhhhh
Q 042220           92 AAVLQK   97 (255)
Q Consensus        92 ~~~~~~   97 (255)
                      ++.++.
T Consensus        77 ~~~g~~   82 (125)
T d1bi7b_          77 AREGFL   82 (125)
T ss_dssp             HHHTCH
T ss_pred             cccccc
Confidence            998554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=115.07  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=72.1

Q ss_pred             CCCCcHHHHHHHcChHHHHHHHHH----hCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCch
Q 042220           12 DQKMTALLLAAGRGHIRVVNEIIS----TCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTP   87 (255)
Q Consensus        12 ~~G~tpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~Tp   87 (255)
                      ++|+||||+|+++|+.++++.|++    .+.++ +.+|.+|+||||+|+..|+  .+++++|+ +.+++.+..+.+|.++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~--~~iv~~Ll-~~ga~~~~~~~~~~~~   76 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTL--PSVVRLLV-TAGASPMALDRHGQTA   76 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccc--cccccccc-cccccccccccccccc
Confidence            379999999999999999998875    56676 8899999999999999999  99999999 7899999999999999


Q ss_pred             hHHHHHh
Q 042220           88 LHVLAAV   94 (255)
Q Consensus        88 Lh~A~~~   94 (255)
                      ++.|...
T Consensus        77 ~~~a~~~   83 (228)
T d1k1aa_          77 AHLACEH   83 (228)
T ss_dssp             HHHHHHT
T ss_pred             ccccccc
Confidence            9999765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.7e-15  Score=128.33  Aligned_cols=86  Identities=20%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +..+. ++.||||.++..++.+.++.+++.+.++ +.+|.+|+||||+|+++|+  .+++++|+ +.|+++|.+|.+|+|
T Consensus       291 ~~~~~-~~~t~L~~~~~~~~~~~~~~ll~~g~~i-n~~d~~G~T~Lh~A~~~g~--~~iv~~Ll-~~GAd~n~~d~~G~t  365 (408)
T d1n11a_         291 DATTR-MGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGH--TDIVTLLL-KNGASPNEVSSDGTT  365 (408)
T ss_dssp             TCCCS-SCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HTTCCSCCCCSSSCC
T ss_pred             ccccc-cccccchhhcccCcceeeeeeccccccc-cccCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCCCCCCCCC
Confidence            34444 5666666666666666666666666666 6788888888888888888  88888888 678888888888888


Q ss_pred             hhHHHHHhhhh
Q 042220           87 PLHVLAAVLQK   97 (255)
Q Consensus        87 pLh~A~~~~~~   97 (255)
                      |||+|++.++.
T Consensus       366 ~L~~A~~~~~~  376 (408)
T d1n11a_         366 PLAIAKRLGYI  376 (408)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHcCCH
Confidence            88888888554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.1e-14  Score=123.40  Aligned_cols=84  Identities=17%  Similarity=0.069  Sum_probs=66.6

Q ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCch-HHHHHHHhhhhhhhhhccCCCCCchh
Q 042220           10 DNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLF-QLHSRLRNRSVEMLINKQDVNGNTPL   88 (255)
Q Consensus        10 d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~-~~~~~~Ll~~~~~~i~~~d~~G~TpL   88 (255)
                      |+ +|+||||+||..|+.++++.|+++++++ +.+|..|+||||.|+..++.+ ...++.+++.....++.+|..|+|||
T Consensus       104 D~-~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~l  181 (301)
T d1sw6a_         104 DE-HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  181 (301)
T ss_dssp             ST-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             CC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHH
Confidence            78 9999999999999999999999999998 789999999999999876400 01122222223356788899999999


Q ss_pred             HHHHHhh
Q 042220           89 HVLAAVL   95 (255)
Q Consensus        89 h~A~~~~   95 (255)
                      |+++...
T Consensus       182 h~~~~~~  188 (301)
T d1sw6a_         182 HHIIITS  188 (301)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9888653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.8e-15  Score=114.36  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             cHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhh
Q 042220           16 TALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVL   95 (255)
Q Consensus        16 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~   95 (255)
                      +|||+||..|+.++++.|+++++++ +.+|.+|+||||+|+ .++  .+++++|+ +.+++++.+|.+|.+|++.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~--~ei~~~Ll-~~~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGN--PEIARRLL-LRGANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSC--HHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccc--cccccccc-ccccccccccccCccccccccccc
Confidence            7999999999999999999999998 889999999999886 788  99999999 789999999999999999999886


Q ss_pred             hhc
Q 042220           96 QKE   98 (255)
Q Consensus        96 ~~~   98 (255)
                      +.+
T Consensus        78 ~~~   80 (156)
T d1ihba_          78 FLD   80 (156)
T ss_dssp             CHH
T ss_pred             ccc
Confidence            554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.7e-14  Score=116.43  Aligned_cols=145  Identities=14%  Similarity=0.032  Sum_probs=90.5

Q ss_pred             CCCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcc--cccccCCchHHHHHHHhCCchHHH--------------
Q 042220            2 DKSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCC--KQVDERGWNLLHFAMASSNLFQLH--------------   65 (255)
Q Consensus         2 d~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~G~t~Lh~A~~~g~~~~~~--------------   65 (255)
                      .+..++.+|+ +|+||||+|+..|+.+++++|+++++++.  ...|..|++|+|++...+.  .++              
T Consensus        23 ~~~~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   99 (229)
T d1ixva_          23 KPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN--LEVVKSLYDRPLKPDLN   99 (229)
T ss_dssp             CGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTC--HHHHHHHHSSSSCCCTT
T ss_pred             CCCcccccCC-CCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccc--ccccccccccccccccc
Confidence            3567788999 99999999999999999999999987652  2445567777777766655  443              


Q ss_pred             ---------------------HHHHhhhhhhhhhccCCCCCchhHHHHHhhhhc------cchh-hhHHHHhhccchHHH
Q 042220           66 ---------------------SRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKE------KTAV-EEGEIKELKPRHTIV  117 (255)
Q Consensus        66 ---------------------~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~~------~~~~-~~~~~~~~~~~~~vv  117 (255)
                                           .+.++ +.+...+.+|.+|+||||+|+..++.+      +... ........++++++.
T Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~  178 (229)
T d1ixva_         100 KITNQGVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  178 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccchhhhhhhhh-hhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhh
Confidence                                 33333 445666778888999999998876654      1100 001122335556655


Q ss_pred             HHHHHHHHHHhccC-CCCCccCCCCCCCcccccc
Q 042220          118 ATLIATVTFAAGFT-LPGGYWGKEGPIPGTSILI  150 (255)
Q Consensus       118 A~Liatvtf~a~l~-~PGg~~~~~~~~~g~~~~~  150 (255)
                      |+.-........|- -.|...+..+.++-+|+..
T Consensus       179 A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~  212 (229)
T d1ixva_         179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV  212 (229)
T ss_dssp             HHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGG
T ss_pred             hcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            55444333333332 2455544444455566653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=116.40  Aligned_cols=86  Identities=21%  Similarity=0.180  Sum_probs=76.6

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +.... +|.||||.|+..|+.+.++++++.++......+.+|+||||+|++.|+  .+++++|+ +.|++++.+|.+|+|
T Consensus       105 ~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~--~~~v~~Ll-~~gad~~~~~~~G~t  180 (221)
T d1iknd_         105 KATNY-NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN--PDLVSLLL-KCGADVNRVTYQGYS  180 (221)
T ss_dssp             GCCCT-TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC--HHHHHHHH-TTTCCSCCCCTTCCC
T ss_pred             ccccc-ccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccccc--HHHHHHHH-hcCCcccccCCCCCC
Confidence            34445 789999999999999999999999988855566789999999999999  99999999 789999999999999


Q ss_pred             hhHHHHHhhh
Q 042220           87 PLHVLAAVLQ   96 (255)
Q Consensus        87 pLh~A~~~~~   96 (255)
                      |||+|++.++
T Consensus       181 pl~~A~~~~~  190 (221)
T d1iknd_         181 PYQLTWGRPS  190 (221)
T ss_dssp             GGGGCTTSSC
T ss_pred             HHHHHHHCCC
Confidence            9999998744

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.5e-14  Score=113.14  Aligned_cols=86  Identities=14%  Similarity=0.075  Sum_probs=79.0

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      ...+. .|.+|||.|++.++.++.+.+++.+.+. +.+|.+|+||||+|+..|+  .+++++|+ +.|+++|.+|.+|+|
T Consensus       138 ~~~~~-~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~--~~~v~~Ll-~~Gad~n~~d~~G~T  212 (228)
T d1k1aa_         138 AVDIK-SGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGL--LPLVRTLV-RSGADSSLKNCHNDT  212 (228)
T ss_dssp             CCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTTSCC
T ss_pred             ccccc-chhhHHHHHHHhhhhhhhhhhhhhcccc-ccccccCcchHHHHHHcCC--HHHHHHHH-HCCCCCCCCCCCCCC
Confidence            34455 7999999999999999999999998887 7899999999999999999  99999999 789999999999999


Q ss_pred             hhHHHHHhhhh
Q 042220           87 PLHVLAAVLQK   97 (255)
Q Consensus        87 pLh~A~~~~~~   97 (255)
                      |||+|+++++.
T Consensus       213 pL~~A~~~~~~  223 (228)
T d1k1aa_         213 PLMVARSRRVI  223 (228)
T ss_dssp             TTTTCSSHHHH
T ss_pred             HHHHHHhCCCc
Confidence            99999998664

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.48  E-value=2.2e-14  Score=118.70  Aligned_cols=87  Identities=15%  Similarity=0.055  Sum_probs=78.0

Q ss_pred             eeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCc
Q 042220            7 CISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNT   86 (255)
Q Consensus         7 ~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~T   86 (255)
                      +..+. +|+||||+++..++.+..+.++...+...+.+|..|+||||+|++.|+  .+++++|+ +.|+++|.+|.+|+|
T Consensus       181 ~~~~~-~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~--~~iv~~Ll-~~gadin~~d~~G~T  256 (277)
T d2fo1e1         181 DSEKY-KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR--IEVVMYLI-QQGASVEAVDATDHT  256 (277)
T ss_dssp             SSSSC-CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC--HHHHHHHH-HTTCCSSCCCSSSCC
T ss_pred             ccccc-CCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC--HHHHHHHH-HCcCCCCCcCCCCCC
Confidence            34556 899999999999999999987777665557899999999999999999  99999999 789999999999999


Q ss_pred             hhHHHHHhhhh
Q 042220           87 PLHVLAAVLQK   97 (255)
Q Consensus        87 pLh~A~~~~~~   97 (255)
                      |||+|+++++.
T Consensus       257 ~L~~A~~~~~~  267 (277)
T d2fo1e1         257 ARQLAQANNHH  267 (277)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHcCCH
Confidence            99999999664

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.1e-14  Score=115.85  Aligned_cols=143  Identities=13%  Similarity=0.017  Sum_probs=97.9

Q ss_pred             CCcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhh------hh
Q 042220            3 KSAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVE------ML   76 (255)
Q Consensus         3 ~~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~------~~   76 (255)
                      ...+|.+|+ +|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||.++..++  .++++.++. .+      ..
T Consensus        29 ~~~in~~d~-~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~--~~~~~~l~~-~~~~~~~~~~  103 (221)
T d1iknd_          29 LAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGC--LASVGVLTQ-SCTTPHLHSI  103 (221)
T ss_dssp             CCCCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTC--HHHHHHHHH-STTTTSSSCG
T ss_pred             CCCcccCCC-CCCccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhh-hccccccccc
Confidence            445677888 8888888888888888888888888887 7788888888888888888  788777763 22      23


Q ss_pred             hhccCCCCCchhHHHHHhhhhccc-----hhhhHH--HHhhccchHHHHHHHHHHHHHhccCCCCCccCCCCCCCccccc
Q 042220           77 INKQDVNGNTPLHVLAAVLQKEKT-----AVEEGE--IKELKPRHTIVATLIATVTFAAGFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus        77 i~~~d~~G~TpLh~A~~~~~~~~~-----~~~~~~--~~~~~~~~~vvA~Liatvtf~a~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      .+..+.+|.||||.|+..++.+..     .+....  .+..+.++++.|+.-...-....+...|...+..+.++-+|+.
T Consensus       104 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~  183 (221)
T d1iknd_         104 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ  183 (221)
T ss_dssp             GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGG
T ss_pred             ccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHH
Confidence            444556678888888877554300     000000  1123566777777666666666666788887766667677766


Q ss_pred             c
Q 042220          150 I  150 (255)
Q Consensus       150 ~  150 (255)
                      .
T Consensus       184 ~  184 (221)
T d1iknd_         184 L  184 (221)
T ss_dssp             G
T ss_pred             H
Confidence            3

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=4.5e-14  Score=107.11  Aligned_cols=84  Identities=19%  Similarity=0.146  Sum_probs=70.4

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhC---------------------------------CCcccccccCCchHHHHH
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTC---------------------------------PDCCKQVDERGWNLLHFA   55 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~---------------------------------~~~~~~~d~~G~t~Lh~A   55 (255)
                      .|. .|+||||+|+..++.+.++.++...                                 .+. +.+|.+|+||||+|
T Consensus        30 ~~~-~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A  107 (153)
T d1awcb_          30 TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWA  107 (153)
T ss_dssp             CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccc-CCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCcc-ccccccCchHHHhh
Confidence            467 7888888888888877776665543                                 333 45789999999999


Q ss_pred             HHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhhh
Q 042220           56 MASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        56 ~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~   97 (255)
                      +..|+  .+++++|+ +.|++++.+|.+|.||||+|+++++.
T Consensus       108 ~~~g~--~~iv~~ll-~~gad~~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_         108 TEHNH--QEVVELLI-KYGADVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             HHTTC--HHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             hhcch--hheeeecc-ccccCCcccCCCCCCHHHHHHHcCCH
Confidence            99999  99999998 78999999999999999999998765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.46  E-value=2.1e-15  Score=130.72  Aligned_cols=88  Identities=8%  Similarity=-0.005  Sum_probs=72.7

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHH---HHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccC-
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNE---IISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQD-   81 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~---Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d-   81 (255)
                      ++.+|. +|+||||+||++||.++++.   |++.++++ +.+|.+|+||||+|+++|+  .+++++|+ +.|.+++.+| 
T Consensus        83 ~~~~~~-~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~--~~~v~~Ll-~~g~~~~~~~~  157 (346)
T d2ajaa1          83 AHKKGI-KSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGH--LHVLNRLC-ELAPTEIMAMI  157 (346)
T ss_dssp             HHHHTC-CHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTC--HHHHHHHH-HSCTTTHHHHH
T ss_pred             HHhccC-CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCC--HHHHHHHH-HcCCCcccccc
Confidence            345677 89999999999999877665   67888887 8899999999999999999  99999999 6788888765 


Q ss_pred             -CCCCchhHHHHHhhhhc
Q 042220           82 -VNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        82 -~~G~TpLh~A~~~~~~~   98 (255)
                       .+|+||||+|+++||.+
T Consensus       158 ~~~g~t~L~~Aa~~g~~~  175 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLH  175 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHH
T ss_pred             ccCCCChhHHHHHHhhHH
Confidence             46899999999998876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.2e-14  Score=107.64  Aligned_cols=77  Identities=21%  Similarity=0.121  Sum_probs=45.7

Q ss_pred             HHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhh
Q 042220           17 ALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQ   96 (255)
Q Consensus        17 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~   96 (255)
                      .||.||..|+.+++++|++.++...+.+|..|+||||+|+ .++  .+++++|+ +.+.+++.++.+|.+|++.+++.++
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~--~~~v~~Ll-~~~~~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGS--TAIALELL-KQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTC--HHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccc--cccccccc-ccccccccccccccccccccccccc
Confidence            3666666666666666665533222556666666666654 355  56666666 4556666666666666666666544


Q ss_pred             h
Q 042220           97 K   97 (255)
Q Consensus        97 ~   97 (255)
                      .
T Consensus        81 ~   81 (156)
T d1bd8a_          81 L   81 (156)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=8.3e-14  Score=110.69  Aligned_cols=136  Identities=18%  Similarity=0.101  Sum_probs=85.1

Q ss_pred             ecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHH------------------------
Q 042220            9 SDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQL------------------------   64 (255)
Q Consensus         9 ~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~------------------------   64 (255)
                      .|+ +|+||||+||++|+.|++++|++.++++ +.+|..+++++|.++..++  ..                        
T Consensus        19 ~d~-~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (209)
T d1ot8a_          19 MDK-TGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADA--MGVFQILLRNRATNLNARMHDGTTPL   94 (209)
T ss_dssp             HHH-HCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHHTCTTCCTTCCCTTCCCHH
T ss_pred             cCC-CCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence            478 8999999999999999999999999887 6778888888888877655  22                        


Q ss_pred             ----------HHHHHhhhhhhhhhccCCCCCchhHHHHHhhhhc------cchhhhHHHHhhccchHHHHHHHHHHHHHh
Q 042220           65 ----------HSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQKE------KTAVEEGEIKELKPRHTIVATLIATVTFAA  128 (255)
Q Consensus        65 ----------~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~~------~~~~~~~~~~~~~~~~~vvA~Liatvtf~a  128 (255)
                                ..+.|. ..+.+++.+|..|+|||++++..++.+      +.........+.++++++.|+.-.......
T Consensus        95 ~~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~  173 (209)
T d1ot8a_          95 ILAARLAIEGMVEDLI-TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK  173 (209)
T ss_dssp             HHHHHTTCTTHHHHHH-HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             cccccccchhhhhhhh-hhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHH
Confidence                      122222 445667778888888888888765443      111111112223344444444433333333


Q ss_pred             ccCCCCCccCCCCCCCccccc
Q 042220          129 GFTLPGGYWGKEGPIPGTSIL  149 (255)
Q Consensus       129 ~l~~PGg~~~~~~~~~g~~~~  149 (255)
                      .|-..|...+..+.++-+|+.
T Consensus       174 ~Ll~~gad~n~~d~~g~Tpl~  194 (209)
T d1ot8a_         174 ALLDNFANREITDHMDRLPRD  194 (209)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHCCCCCCCcCCCCCCHHH
Confidence            333355554444555567765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-13  Score=113.77  Aligned_cols=82  Identities=26%  Similarity=0.281  Sum_probs=67.7

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHh--------------------------------------CCCcccccccCCchHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIIST--------------------------------------CPDCCKQVDERGWNLLHF   54 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~--------------------------------------~~~~~~~~d~~G~t~Lh~   54 (255)
                      .|.||||+|+++|+.+++++|+++                                      ++++ +.+|.+|+||||.
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~  225 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLIL  225 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHH
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccch
Confidence            688899998888888877777754                                      2232 4467889999999


Q ss_pred             HHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHHHhhhh
Q 042220           55 AMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLAAVLQK   97 (255)
Q Consensus        55 A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~~~~~~   97 (255)
                      |++.|+  .++++++++..|.++|.+|.+|+||||+|++.++.
T Consensus       226 a~~~~~--~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~  266 (285)
T d1wdya_         226 AVEKKH--LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK  266 (285)
T ss_dssp             HHHTTC--HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             hhhcCc--HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence            999999  99999998667899999999999999999998654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.40  E-value=1.5e-13  Score=114.75  Aligned_cols=82  Identities=22%  Similarity=0.215  Sum_probs=73.5

Q ss_pred             CCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           13 QKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        13 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      +|.||||.||+.|+.+++++|+++|+++ +.+|.+|+||||+|+..|+  .+++++|+ +.+.+.+..+..+.|||+.++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~--~eiv~~Ll-~~~~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDN--VDMVKFLV-ENGANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTC--HHHHHHHH-HTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCC--ceeeeeec-ccccccccccccccccccccc
Confidence            4569999999999999999999999998 8899999999999999999  99999999 678888888999999999998


Q ss_pred             Hhhhhc
Q 042220           93 AVLQKE   98 (255)
Q Consensus        93 ~~~~~~   98 (255)
                      ..++.+
T Consensus       115 ~~~~~~  120 (291)
T d1s70b_         115 SCGYLD  120 (291)
T ss_dssp             HHTCHH
T ss_pred             cccccc
Confidence            875543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.39  E-value=1.1e-14  Score=126.07  Aligned_cols=90  Identities=13%  Similarity=0.070  Sum_probs=74.2

Q ss_pred             CcceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccc--cCCchHHHHHHHhCCchHHHHHHHhhhhhhh---hh
Q 042220            4 SAACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVD--ERGWNLLHFAMASSNLFQLHSRLRNRSVEML---IN   78 (255)
Q Consensus         4 ~~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~---i~   78 (255)
                      ..++.+|+ +|+||||+||++||.+++++|++++++. +..|  .+|+||||+|+++|+  .+++++|+ +.|..   .+
T Consensus       117 ~~in~~~~-~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~--~~iv~~Ll-~~~~~~~~~~  191 (346)
T d2ajaa1         117 EIVKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGH--LHVLNRLC-ELAPTEATAM  191 (346)
T ss_dssp             SSCC--CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTC--HHHHHHHH-HSCGGGHHHH
T ss_pred             CcccccCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhh--HHHHHHHH-HcCCcccccc
Confidence            34678888 9999999999999999999999999987 5554  569999999999999  99999999 55543   45


Q ss_pred             ccCCCCCchhHHHHHhhhhc
Q 042220           79 KQDVNGNTPLHVLAAVLQKE   98 (255)
Q Consensus        79 ~~d~~G~TpLh~A~~~~~~~   98 (255)
                      .++.+|.||+|.|+++||.+
T Consensus       192 ~~~~~~~t~l~~A~~~g~~~  211 (346)
T d2ajaa1         192 IQAENYYAFRWAAVGRGHHN  211 (346)
T ss_dssp             HHHHHHHHHHHHHSTTCCHH
T ss_pred             cccCCCcchhhHHhhcCHHH
Confidence            55666788888899888775

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=6.6e-13  Score=101.88  Aligned_cols=63  Identities=13%  Similarity=0.063  Sum_probs=59.4

Q ss_pred             cceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhh
Q 042220            5 AACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNR   71 (255)
Q Consensus         5 ~v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~   71 (255)
                      .++.+|+ +|+||||+|++.|+.++++.|+++++++ +.+|.+|+||||+|++.|+  .+++++|++
T Consensus        73 din~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~--~~i~~~L~~  135 (154)
T d1dcqa1          73 NLDKQTG-KGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKH--EHCEELLTQ  135 (154)
T ss_dssp             CTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHHH
T ss_pred             Chhhhhh-hhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCC--HHHHHHHHH
Confidence            3578899 9999999999999999999999999998 8899999999999999999  999999984

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=4.2e-13  Score=101.55  Aligned_cols=52  Identities=21%  Similarity=0.116  Sum_probs=46.1

Q ss_pred             CcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHh
Q 042220           15 MTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRN   70 (255)
Q Consensus        15 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll   70 (255)
                      .||||.||+.|+.++++.|++++++. + .|..|+||||+|+..++  .+.++.+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~--~~~~~~~~   54 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGH--FSTTEVLL   54 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTC--HHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccc--cccccccc
Confidence            49999999999999999999999986 3 69999999999999998  77666554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-12  Score=99.19  Aligned_cols=87  Identities=18%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHhCCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIISTCPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGN   85 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~   85 (255)
                      ++.+|+ +|+||||+|+ .|+.|+++.|+++++++ +.++.+|.++++.++..++  .+..+.++ +.+.+++..|..|.
T Consensus        27 ~n~~d~-~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~--~~~~~~l~-~~~~~~~~~~~~~~  100 (156)
T d1ihba_          27 VNAQNG-FGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF--LDTLQTLL-EFQADVNIEDNEGN  100 (156)
T ss_dssp             TTCCCT-TSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC--HHHHHHHH-HTTCCTTCCCTTSC
T ss_pred             cCccCC-cccccccccc-ccccccccccccccccc-ccccccCcccccccccccc--cccccccc-cccccccccccccc
Confidence            567888 9999999875 78999999999999887 7788888888888888888  88888777 67777888888888


Q ss_pred             chhHHHHHhhhhc
Q 042220           86 TPLHVLAAVLQKE   98 (255)
Q Consensus        86 TpLh~A~~~~~~~   98 (255)
                      +|+|+|++.++.+
T Consensus       101 ~~l~~a~~~~~~~  113 (156)
T d1ihba_         101 LPLHLAAKEGHLR  113 (156)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             ccccccccccccc
Confidence            8888888775544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.9e-13  Score=108.89  Aligned_cols=72  Identities=17%  Similarity=0.210  Sum_probs=66.1

Q ss_pred             ceeecCCCCCcHHHHHHHcChHHHHHHHHHh-CCCcccccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCC
Q 042220            6 ACISDNDQKMTALLLAAGRGHIRVVNEIIST-CPDCCKQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDV   82 (255)
Q Consensus         6 v~~~d~~~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~   82 (255)
                      ++.+|. +|+||||+|++.|+.++++.|+++ +.++ +.+|.+|+||||+|+++|+  .+++++|+ +.|+++|.+|.
T Consensus       212 ~n~~~~-~g~t~L~~a~~~~~~~~v~~lL~~~g~di-n~~d~~G~TpL~~A~~~~~--~eiv~~Ll-~~GAd~n~~d~  284 (285)
T d1wdya_         212 VNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKL--KKIAELLC-KRGASTDCGDL  284 (285)
T ss_dssp             SSCCCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTC--HHHHHHHH-HHSSCSCCSSC
T ss_pred             CCccCC-CCCCccchhhhcCcHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCcccC
Confidence            467788 999999999999999999999986 5566 8899999999999999999  99999999 89999999984

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=2e-12  Score=109.34  Aligned_cols=48  Identities=17%  Similarity=-0.006  Sum_probs=45.5

Q ss_pred             cccccCCchHHHHHHHhCCchHHHHHHHhhhhhhhhhccCCCCCchhHHHH
Q 042220           42 KQVDERGWNLLHFAMASSNLFQLHSRLRNRSVEMLINKQDVNGNTPLHVLA   92 (255)
Q Consensus        42 ~~~d~~G~t~Lh~A~~~g~~~~~~~~~Ll~~~~~~i~~~d~~G~TpLh~A~   92 (255)
                      +.+|.+|+||||+|+++|+  .+++++|+ +.|++++.+|++|.||||+|+
T Consensus       253 n~~D~~G~TpLh~A~~~g~--~~iv~~Ll-~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         253 NAQDSNGDTCLNIAARLGN--ISIVDALL-DYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TCCCTTSCCHHHHHHHHCC--HHHHHHHH-HTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHcCC--HHHHHHHH-HCCCCCCCCCCCCCCHHHHcC
Confidence            5679999999999999999  99999999 789999999999999999986