Citrus Sinensis ID: 042221

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MSGYVHQLLGPSELQLQPQHHQADSADKDIDERSHDQSAAAGGNNTTSSGSGSGGGGGAGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQEDADSTTPPPAASQSSGVTGGCGQLGDGGVPLPFHNLGIMNMGINYPFSGGGDVFAAGNWSSTGTTTGNNAATTTRQPPF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEccccEEEEEEEcccccccccccccccccccEEEEEEEEEEEEEcccccccccccccccEEEEEEcccccEEcccccccEEEcccEEEEEEEEcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEccccccccccccccccccEEEEEEcEEEEEEEcccccccccccccccEEEEEEcccccEEEccEHHHHHccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msgyvhqllgpselqlqpqhhqadsadkdidershdqsaaaggnnttssgsgsgggggagrrprgrpagsrnkpkppiivtrdtpnalRSHVLEissgadivdsVSTYARRRGRGVcilsgagavtnvtlrqppagaggsssasiaggAVNITLHGRFEILsltgtslpppappgaggltiylaggqgqvvggsvvgpltaSGTVVLMAASFANAvydrlplelqedadsttpppaasqssgvtggcgqlgdggvplpfhnlgimnmginypfsgggdvfaagnwsstgtttgnnaatttrqppf
Flexible Loop (DISEMBL)
MSGYVHQLLGPSELQLQPQHHQADSADKDIDERSHDQsaaaggnnttssgsgsgggggagrrprgrpagsrnkpkppiivtrdtpnALRSHvleissgadivdSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQEDADSTTPPPAASQSSGVTGGCGQLGDGGVPLPFHNLGIMNMGINYPFSGGGDVFAAGNWSSTgtttgnnaatttrqppf
Low Complexity Region (SEG)
MSGYVHQLLGPSELQLQPQHHQADSADKDIDERSHDQsaaaggnnttssgsgsgggggagrrprgrpagsrNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPagaggsssasiaggaVNITLHGRFEIlsltgtslpppappgaggltIYLAggqgqvvggsvvgPLTASGTVVLMAASFANAVYDRLPLELQEdadsttpppaasQSSGVTGGCGQLGDGGVPLPFHNLGIMNMGINYPFSGGGDVFAAGNWSStgtttgnnaatttRQPPF
Disordered region (IsUnstruct)
*********************************************************************************************************************IL***************************GGAVNITLHGRFEILSL**************GLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPL***********************GCGQLGDGGVPLPFHNLGIMNMGINYPFSGGGDVFAAGNW********************
Disordered Region (DISOPRED)
*SGYV*Q*****************************************************************************PNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTL******************AVNITLHGRFEILSLTGTSLPPP**********YLAGGQGQVVGGSVVGPLTASGTVVLMAASFAN*******************************************************************************************
Disordered Region (DISEMBL)
MSGYVHQLLGPSELQL*******************************************************NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQP**********SIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQE*******************GCGQLGDGGVPLPFHNLGIMNMGINYPFSGGGDVFAAGNWSSTGTTTGNN**********
Disordered Region (DISPRO)
********L***************************************************************KPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSS***IAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYD*****************************************HN*GIMNMG*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGYVHQLLGPSELQLQPQHHQADSADKDIDERSHDQSAAAGGNNTTSSGSGSGGGGGAGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQEDADSTTPPPAASQSSGVTGGCGQLGDGGVPLPFHNLGIMNMGINYPFSGGGDVFAAGNWSSTGTTTGNNAATTTRQPPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.783	0.768	0.535	6e-47

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score =  187 bits (476), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 152/284 (53%), Positives = 175/284 (61%), Gaps = 45/284 (15%)

Query: 2   SGYVHQLLGPS--ELQLQPQ--------------------HHQADSADKDIDERSHDQSA 39
           S Y H L  P     QLQPQ                        DS + D   + H Q  
Sbjct: 12  SRYFHNLFRPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDHSNKDHHQQG 71

Query: 40  AAGGNNTTSSGSGSGGGGGAGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGA 99
               +  TSS +        G+RPRGRP GS+NK KPPIIVTRD+PNALRSHVLE+S GA
Sbjct: 72  RPDSDPNTSSSA-------PGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGA 124

Query: 100 DIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFE 159
           DIV+SVSTYARRRGRGV +L G G V+NVTLRQP       +   ++GG   +TLHGRFE
Sbjct: 125 DIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQP---VTPGNGGGVSGGGGVVTLHGRFE 181

Query: 160 ILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDR 219
           ILSLTGT LPPPAPPGAGGL+I+LAGGQGQVVGGSVV PL AS  V+LMAASF+NAV++R
Sbjct: 182 ILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFER 241

Query: 220 LPL-------ELQEDADSTTPP-----PAASQSSGVTGGCGQLG 251
           LP+                 PP     P+AS  SGVT G GQLG
Sbjct: 242 LPIEEEEEEGGGGGGGGGGGPPQMQQAPSASPPSGVT-GQGQLG 284

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
255539338	289	DNA binding protein, putative [Ricinus c	0.849	0.896	0.6	2e-59
326500592	331	predicted protein [Hordeum vulgare subsp	0.672	0.619	0.629	3e-58
224127406	300	predicted protein [Populus trichocarpa]	0.609	0.62	0.649	5e-58
296087883	275	unnamed protein product [Vitis vinifera]	0.527	0.585	0.662	4e-56
225463966	291	PREDICTED: putative DNA-binding protein	0.527	0.553	0.662	4e-56
357137273	337	PREDICTED: putative DNA-binding protein	0.580	0.525	0.642	4e-56
147812096	259	hypothetical protein VITISV_016751 [Viti	0.527	0.621	0.662	8e-56
225457666	292	PREDICTED: putative DNA-binding protein	0.842	0.880	0.587	8e-56
224131940	169	predicted protein [Populus trichocarpa]	0.540	0.976	0.745	8e-56
413953880	309	hypothetical protein ZEAMMB73_546585 [Ze	0.501	0.495	0.697	1e-55

>gi|255539338|ref|XP_002510734.1| DNA binding protein, putative [Ricinus communis] gi|223551435|gb|EEF52921.1| DNA binding protein, putative [Ricinus communis]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 174/290 (60%), Positives = 203/290 (70%), Gaps = 31/290 (10%)

Query: 2   SGYVHQLLGPSELQLQ----PQHHQADSADKDIDERSHDQSAAAGGNNTTSSGSGSGGGG 57
           S YVHQLL P EL LQ    P    +DS D +I  +S D       N  + S + +    
Sbjct: 15  SRYVHQLLRP-ELHLQRPSFPSQPSSDSKDNNISPQSKDH------NKFSDSEAAAATSS 67

Query: 58  GAGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVC 117
           G+ RRPRGRPAGS+NKPKPPIIVTRD+PNALRSHVLE+S+G+DI++SVS YAR+RGRGVC
Sbjct: 68  GSNRRPRGRPAGSKNKPKPPIIVTRDSPNALRSHVLEVSTGSDIMESVSIYARKRGRGVC 127

Query: 118 ILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAG 177
           +LSG G V NVTLRQP + AG             +TLHGRFEILSL+GT LPPPAPPGAG
Sbjct: 128 VLSGNGTVANVTLRQPASPAGSV-----------VTLHGRFEILSLSGTVLPPPAPPGAG 176

Query: 178 GLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQEDADSTTPPPA- 236
           GL+I+L+GGQGQVVGGSVVGPL ASG VVLMAASFANAV++RLPL   ++ D T P  + 
Sbjct: 177 GLSIFLSGGQGQVVGGSVVGPLMASGPVVLMAASFANAVFERLPL---DEEDGTVPVQST 233

Query: 237 ASQSSGVTGGCGQLGDGGVPLPFHNLGIMNMG---INYPFSGGGDVFAAG 283
           ASQSSGVTGG G  G  G        G+ NMG    NYPFS  GD+F  G
Sbjct: 234 ASQSSGVTGGGGGAGQLGDGGGGGGAGLFNMGGNVANYPFS--GDLFGWG 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326500592|dbj|BAJ94962.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 153/243 (62%), Positives = 170/243 (69%), Gaps = 38/243 (15%)

Query: 61  RRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILS 120
           RRPRGRPAGS+NKPKPPIIVTRD+PNAL SHVLE+S+GADIVD V+ YARRRGRGVC+LS
Sbjct: 98  RRPRGRPAGSKNKPKPPIIVTRDSPNALHSHVLEVSAGADIVDCVAEYARRRGRGVCVLS 157

Query: 121 GAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLT 180
           G GAV NV LRQP A   GS  A         TL GRFEILSLTGT LPPPAPPGA GLT
Sbjct: 158 GGGAVVNVALRQPGASPPGSVVA---------TLRGRFEILSLTGTVLPPPAPPGASGLT 208

Query: 181 IYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL---------------Q 225
           ++L+GGQGQV+GGSVVG L A+G VVLMAASF+NAVY+RLPLE                 
Sbjct: 209 VFLSGGQGQVIGGSVVGTLVAAGPVVLMAASFSNAVYERLPLEGEEEEVAAAAAGAEAQD 268

Query: 226 EDADSTTPP---PAASQSSGVTGGCGQLGDGGVPLPFHNLGIMNMGINYPFSGGGDVFAA 282
           + A S  PP   PAASQSSGVTGG      GG+ L  +NL   N+G NY     GD F  
Sbjct: 269 QVAQSGGPPGQQPAASQSSGVTGGDA----GGMSL--YNLAGGNVG-NYQLP--GDTF-- 317

Query: 283 GNW 285
           G W
Sbjct: 318 GAW 320

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127406|ref|XP_002320066.1| predicted protein [Populus trichocarpa] gi|222860839|gb|EEE98381.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 135/208 (64%), Positives = 157/208 (75%), Gaps = 22/208 (10%)

Query: 31  DERSHDQSAAAGGNNTTSSG-----SGSGGGGGAGRRPRGRPAGSRNKPKPPIIVTRDTP 85
            +R HD+      NN T  G     S SGG G   RRPRGRPAGS+NKPKPPII+TRD+ 
Sbjct: 47  QKREHDE---INNNNNTVEGLELVPSSSGGEGEISRRPRGRPAGSKNKPKPPIIITRDSA 103

Query: 86  NALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASI 145
           NALRSHV+EI++G+DI++SVST+ARRR RGVCILSG G VTNVTL+QP            
Sbjct: 104 NALRSHVMEIATGSDIMESVSTFARRRQRGVCILSGTGTVTNVTLKQP-----------A 152

Query: 146 AGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTV 205
           + GAV +TLHGRFEILSL+G+ LPPPAPP A GLT+YLAGGQGQV+GGSV GPL ASG V
Sbjct: 153 SPGAV-VTLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVIGGSVAGPLLASGPV 211

Query: 206 VLMAASFANAVYDRLPLELQEDADSTTP 233
           V+MAASF NA Y+RLPLE  ED +S TP
Sbjct: 212 VVMAASFGNAAYERLPLE--EDIESQTP 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087883|emb|CBI35166.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 138/172 (80%), Gaps = 11/172 (6%)

Query: 59  AGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCI 118
           A RRPRGRP GS+NKPKPPI VTRD+PNALRSHV+E+++G+DI +S++ +ARRR RGVC+
Sbjct: 65  ATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQFARRRQRGVCV 124

Query: 119 LSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGG 178
           LS +G V NVTLRQP          S  GGAV + LHGRFEILSLTG  LP PAPPG+ G
Sbjct: 125 LSASGTVMNVTLRQP----------SAPGGAV-MALHGRFEILSLTGAFLPGPAPPGSTG 173

Query: 179 LTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQEDADS 230
           LTIYLAGGQ QVVGGSVVG L A+G V+++AA+F+NA Y+RLPLE +E+A S
Sbjct: 174 LTIYLAGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEEAGS 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463966|ref|XP_002271606.1| PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera]

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 138/172 (80%), Gaps = 11/172 (6%)

Query: 59  AGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCI 118
           A RRPRGRP GS+NKPKPPI VTRD+PNALRSHV+E+++G+DI +S++ +ARRR RGVC+
Sbjct: 65  ATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQFARRRQRGVCV 124

Query: 119 LSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGG 178
           LS +G V NVTLRQP          S  GGAV + LHGRFEILSLTG  LP PAPPG+ G
Sbjct: 125 LSASGTVMNVTLRQP----------SAPGGAV-MALHGRFEILSLTGAFLPGPAPPGSTG 173

Query: 179 LTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQEDADS 230
           LTIYLAGGQ QVVGGSVVG L A+G V+++AA+F+NA Y+RLPLE +E+A S
Sbjct: 174 LTIYLAGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEEAGS 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137273|ref|XP_003570225.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Brachypodium distachyon]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 151/210 (71%), Gaps = 33/210 (15%)

Query: 61  RRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILS 120
           RRPRGRPAGS+NKPKPPIIVTRD+PNAL SHVLE+++GADIVD V+ YARRRGRGVC+LS
Sbjct: 95  RRPRGRPAGSKNKPKPPIIVTRDSPNALHSHVLEVAAGADIVDCVAEYARRRGRGVCVLS 154

Query: 121 GAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLT 180
           G GAV NV LRQP A   GS  A         TL GRFEILSLTGT LPPPAPPGA GLT
Sbjct: 155 GGGAVVNVALRQPGASPPGSVVA---------TLRGRFEILSLTGTVLPPPAPPGASGLT 205

Query: 181 IYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPL------------------ 222
           ++L+GGQGQV+GGSVVG L A+G VVLMAASFANAVY+RLPL                  
Sbjct: 206 VFLSGGQGQVIGGSVVGSLVAAGPVVLMAASFANAVYERLPLEGEEEDQAAAAAAAAAAG 265

Query: 223 ------ELQEDADSTTPPPAASQSSGVTGG 246
                 ++ + A      PAASQSSGVTGG
Sbjct: 266 AEAQQDQVAQSAGPHGQQPAASQSSGVTGG 295

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812096|emb|CAN61523.1| hypothetical protein VITISV_016751 [Vitis vinifera]

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 114/172 (66%), Positives = 138/172 (80%), Gaps = 11/172 (6%)

Query: 59  AGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCI 118
           A RRPRGRP GS+NKPKPPI VTRD+PNALRSHV+E+++G+DI +S++ +ARRR RGVC+
Sbjct: 33  ATRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVANGSDITESIAQFARRRQRGVCV 92

Query: 119 LSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGG 178
           LS +G V NVTLRQP          S  GGAV + LHGRFEILSLTG  LP PAPPG+ G
Sbjct: 93  LSASGTVMNVTLRQP----------SAPGGAV-MALHGRFEILSLTGAFLPGPAPPGSTG 141

Query: 179 LTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQEDADS 230
           LTIYLAGGQ QVVGGSVVG L A+G V+++AA+F+NA Y+RLPLE +E+A S
Sbjct: 142 LTIYLAGGQAQVVGGSVVGSLIAAGPVMVIAATFSNATYERLPLEDEEEAGS 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457666|ref|XP_002273442.1| PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera]

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 168/286 (58%), Positives = 194/286 (67%), Gaps = 29/286 (10%)

Query: 2   SGYVHQLLGPSELQLQ-----PQHHQADSADKDIDERSHDQSAAAGGNNTTSSGSGSGGG 56
           S YVHQLLGP EL LQ     PQH          DE   DQ   A      ++ S  G  
Sbjct: 10  SRYVHQLLGP-ELHLQRPSSLPQHQATQQPSDSRDESPDDQEQRAD-TEEAAAASSGGAT 67

Query: 57  GGAGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGV 116
             + RRPRGRP GS+NKPKPPIIVTRD+PNALRSHVLE+++GAD+++SV  YARRRGRGV
Sbjct: 68  TSSNRRPRGRPPGSKNKPKPPIIVTRDSPNALRSHVLEVAAGADVMESVLNYARRRGRGV 127

Query: 117 CILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGA 176
           C+LSG G V NVTLRQP + AG     SI      +TLHGRFEILSL+GT LPPPAPP A
Sbjct: 128 CVLSGGGTVMNVTLRQPASPAG-----SI------VTLHGRFEILSLSGTVLPPPAPPSA 176

Query: 177 GGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQEDADSTTPPPA 236
           GGL+I+L+GGQGQVVGGSVVGPL ASG VVLMAASFANAV++RLPLE +E A      P 
Sbjct: 177 GGLSIFLSGGQGQVVGGSVVGPLMASGPVVLMAASFANAVFERLPLEEEEGAVQVQ--PT 234

Query: 237 ASQSS-------GVTGGCGQLGDGGVPLPFHNLGIMNMGINYPFSG 275
           ASQSS       G   G G    GG  +P +N+G  +MG N+PF G
Sbjct: 235 ASQSSGVTGGGAGGQLGDGGGSGGGAGVPIYNMG-ASMG-NFPFPG 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131940|ref|XP_002328145.1| predicted protein [Populus trichocarpa] gi|222837660|gb|EEE76025.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 132/177 (74%), Positives = 146/177 (82%), Gaps = 12/177 (6%)

Query: 55  GGGGAGRRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGR 114
           G   +GRRPRGRPAGS+NKPKPPII+ RDTPNALRSH+LEIS G+DIV+S+S YARRR  
Sbjct: 3   GNSSSGRRPRGRPAGSKNKPKPPIIIARDTPNALRSHLLEISPGSDIVESISNYARRRAH 62

Query: 115 GVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPP 174
           GVCILSG+GAVTNVTLRQP  G GGSS+         +TLHGRFEILSLTGTSLP PAPP
Sbjct: 63  GVCILSGSGAVTNVTLRQP--GGGGSSAV--------MTLHGRFEILSLTGTSLPSPAPP 112

Query: 175 GAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLELQEDADST 231
            AGGL+I LAGGQGQVVGG VVGPL AS  VVLMAASFANA+YDRLP+E  ED +S 
Sbjct: 113 EAGGLSISLAGGQGQVVGGRVVGPLMASSLVVLMAASFANAMYDRLPVE--EDRESV 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413953880|gb|AFW86529.1| hypothetical protein ZEAMMB73_546585 [Zea mays]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 132/162 (81%), Gaps = 9/162 (5%)

Query: 61  RRPRGRPAGSRNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILS 120
           R+PRGRP GS+NKPKPPII+TRD+PNAL SH+LE+++GADIV+ VS YARRR RGVC+LS
Sbjct: 74  RKPRGRPLGSKNKPKPPIIITRDSPNALHSHLLEVAAGADIVECVSEYARRRCRGVCVLS 133

Query: 121 GAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLT 180
           G GAV+N+ LRQP A   GS  A         TL G+FEILSLTGT LPPPAPPGA  L+
Sbjct: 134 GGGAVSNLALRQPGADPPGSLLA---------TLRGQFEILSLTGTVLPPPAPPGASNLS 184

Query: 181 IYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPL 222
           +Y+AGGQGQV+GGSV G L A+G VVLMAASFANAVY+RLPL
Sbjct: 185 VYVAGGQGQVMGGSVAGQLIAAGPVVLMAASFANAVYERLPL 226

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2122148	299	AGF1 "AT4G35390" [Arabidopsis	0.891	0.909	0.395	8.4e-42
TAIR|locus:2011701	302	SOB3 "SUPPRESSOR OF PHYB-4#3"	0.488	0.493	0.519	1.2e-33
TAIR|locus:2084958	315	AHL19 "AT-hook motif nuclear-l	0.665	0.644	0.404	1.5e-33
TAIR|locus:2037350	311	ESC "ESCAROLA" [Arabidopsis th	0.498	0.488	0.522	2.5e-33
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.472	0.454	0.493	1.3e-31
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.478	0.450	0.470	8.8e-31
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.472	0.424	0.470	4.9e-30
TAIR|locus:2063469	285	GIK "GIANT KILLER" [Arabidopsi	0.629	0.673	0.370	4.4e-29
TAIR|locus:2129490	292	AT4G17800 [Arabidopsis thalian	0.616	0.643	0.375	7.1e-29
TAIR|locus:2101916	265	AHL18 "AT3G60870" [Arabidopsis	0.462	0.532	0.458	5e-28

TAIR|locus:2122148 AGF1 "AT4G35390" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 119/301 (39%), Positives = 146/301 (48%)

Query:     1 MSGYVHQLLGPSELQLQ-PQHHQA--DSADKDIDERSHDQXXXXXXXXXXXXXXXXXXXX 57
             MS Y+H LLG  EL LQ P+  +   D  + +++    D+                    
Sbjct:     1 MSSYMHPLLG-QELHLQRPEDSRTPPDQNNMELNRSEADEAKAETTPTGGATSSATASGS 59

Query:    58 XXXXXXXXXXXXXXNKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVC 117
                           NKPKPP I+TRD+PN LRSHVLE++SG+DI ++VSTYA RRG GVC
Sbjct:    60 SSGRRPRGRPAGSKNKPKPPTIITRDSPNVLRSHVLEVTSGSDISEAVSTYATRRGCGVC 119

Query:   118 ILSGAGAVTNVTLRQPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXX 177
             I+SG GAVTNVT+RQP                  ITLHGRF+I                 
Sbjct:   120 IISGTGAVTNVTIRQPAAPAGGGV----------ITLHGRFDILSLTGTALPPPAPPGAG 169

Query:   178 XXXIYLAXXXXXXXXXXXXXPLTASGTVVLMAASFANAVYDRLPLELQEX-----XXXXX 232
                +YLA              L ASG VVLMAASFANAVYDRLP+E +E           
Sbjct:   170 GLTVYLAGGQGQVVGGNVAGSLIASGPVVLMAASFANAVYDRLPIEEEETPPPRTTGVQQ 229

Query:   233 XXXXXXQSSGVTGGCGQL-------GDGGVPLPFHNLGIMNMGINYPFSGGGDVFAAGNW 285
                   QSS VTG   Q        G+GG  + F+NLG MNM  N+ FSGG D++     
Sbjct:   230 QQPEASQSSEVTGSGAQACESNLQGGNGGGGVAFYNLG-MNMN-NFQFSGG-DIYGMSGG 286

Query:   286 S 286
             S
Sbjct:   287 S 287

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IEP

TAIR|locus:2011701 SOB3 "SUPPRESSOR OF PHYB-4#3" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 79/152 (51%), Positives = 92/152 (60%)

Query:    72 NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLR 131
             NKPKPP+IVTRD+PN LRSHVLE+SSGADIV+SV+TYARRRGRGV ILSG G V NV+LR
Sbjct:    83 NKPKPPVIVTRDSPNVLRSHVLEVSSGADIVESVTTYARRRGRGVSILSGNGTVANVSLR 142

Query:   132 QPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXX 191
             QP                  + LHGRFEI                    I+L+       
Sbjct:   143 QPATTAAHGANGGTGGV---VALHGRFEILSLTGTVLPPPAPPGSGGLSIFLSGVQGQVI 199

Query:   192 XXXXXXPLTASGTVVLMAASFANAVYDRLPLE 223
                   PL ASG V+LMAASF+NA ++RLPLE
Sbjct:   200 GGNVVAPLVASGPVILMAASFSNATFERLPLE 231

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2084958 AHL19 "AT-hook motif nuclear-localized protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/215 (40%), Positives = 111/215 (51%)

Query:    72 NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLR 131
             NKPKPPI VTRD+PNAL+SHV+EI+SG D++++++T+ARRR RG+CILSG G V NVTLR
Sbjct:    91 NKPKPPIFVTRDSPNALKSHVMEIASGTDVIETLATFARRRQRGICILSGNGTVANVTLR 150

Query:   132 QPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXX 191
             QP                  + L GRFEI                    IYLA       
Sbjct:   151 QPSTAAVAAAPGGAAV----LALQGRFEILSLTGSFLPGPAPPGSTGLTIYLAGGQGQVV 206

Query:   192 XXXXXXPLTASGTVVLMAASFANAVYDRLPLELQEXXXXXXXXXXXXQSSGVTGGCGQL- 250
                   PL A+G V+L+AA+F+NA Y+RLPLE +E               G  GG G   
Sbjct:   207 GGSVVGPLMAAGPVMLIAATFSNATYERLPLEEEEAAERGGGGGSGGVVPGQLGGGGSPL 266

Query:   251 ------GDGGVPLPFHNLGIMNMGINYPFSGGGDV 279
                   GDG   LP +N+   N+  N    GGG +
Sbjct:   267 SSGAGGGDGNQGLPVYNMP-GNLVSNGGSGGGGQM 300

GO:0005737 "cytoplasm" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2037350 ESC "ESCAROLA" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 81/155 (52%), Positives = 94/155 (60%)

Query:    72 NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLR 131
             NK KPPIIVTRD+PNALRSHVLE+S GADIV+SVSTYARRRGRGV +L G G V+NVTLR
Sbjct:    97 NKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLR 156

Query:   132 QPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXX 191
             QP                  +TLHGRFEI                    I+LA       
Sbjct:   157 QPVTPGNGGGVSGGGGV---VTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVV 213

Query:   192 XXXXXXPLTASGTVVLMAASFANAVYDRLPLELQE 226
                   PL AS  V+LMAASF+NAV++RLP+E +E
Sbjct:   214 GGSVVAPLIASAPVILMAASFSNAVFERLPIEEEE 248

GO:0005737 "cytoplasm" evidence=ISM

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006325 "chromatin organization" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0003680 "AT DNA binding" evidence=IDA

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 75/152 (49%), Positives = 92/152 (60%)

Query:    72 NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLR 131
             NKPKPPII+TRD+ NAL+SHV+E+++G D+++SV+ +ARRR RG+C+LSG GAVTNVT+R
Sbjct:   100 NKPKPPIIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLSGNGAVTNVTIR 159

Query:   132 QPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXX 191
             QP                VN  LHGRFEI                    IYLA       
Sbjct:   160 QP------ASVPGGGSSVVN--LHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVV 211

Query:   192 XXXXXXPLTASGTVVLMAASFANAVYDRLPLE 223
                   PL ASG VV+MAASF NA Y+RLPLE
Sbjct:   212 GGSVVGPLMASGPVVIMAASFGNAAYERLPLE 243

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 73/155 (47%), Positives = 91/155 (58%)

Query:    72 NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLR 131
             NKPKPPII+TRD+ NALR+HV+EI  G D+V+SV+T+ARRR RGVC++SG G VTNVT+R
Sbjct:   116 NKPKPPIIITRDSANALRTHVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIR 175

Query:   132 QPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXX 191
             QP                  ++LHGRFEI                    +YLA       
Sbjct:   176 QPGSHPSPGSV---------VSLHGRFEILSLSGSFLPPPAPPTATGLSVYLAGGQGQVV 226

Query:   192 XXXXXXPLTASGTVVLMAASFANAVYDRLPLELQE 226
                   PL  +G VV+MAASF+NA Y+RLPLE  E
Sbjct:   227 GGSVVGPLLCAGPVVVMAASFSNAAYERLPLEEDE 261

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 73/155 (47%), Positives = 90/155 (58%)

Query:    72 NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLR 131
             NKPK PII+TRD+ NALR+HV+EI  G DIVD ++T+ARRR RGVC++SG G+VTNVT+R
Sbjct:   129 NKPKAPIIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIR 188

Query:   132 QPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXX 191
             QP                  ++LHGRFEI                    +YLA       
Sbjct:   189 QPGSPPGSV-----------VSLHGRFEILSLSGSFLPPPAPPAATGLSVYLAGGQGQVV 237

Query:   192 XXXXXXPLTASGTVVLMAASFANAVYDRLPLELQE 226
                   PL  SG VV+MAASF+NA Y+RLPLE  E
Sbjct:   238 GGSVVGPLLCSGPVVVMAASFSNAAYERLPLEEDE 272

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2063469 GIK "GIANT KILLER" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 76/205 (37%), Positives = 103/205 (50%)

Query:    72 NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLR 131
             NKPKPP+IVTR++ N LR+H+LE+ SG D+ + +STYARRR RG+C+LSG G VTNV++R
Sbjct:    89 NKPKPPVIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGICVLSGTGTVTNVSIR 148

Query:   132 QPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXX 191
             QP                  +TL G FEI                    I+LA       
Sbjct:   149 QPTAAGAV------------VTLRGTFEILSLSGSFLPPPAPPGATSLTIFLAGAQGQVV 196

Query:   192 XXXXXXPLTASGTVVLMAASFANAVYDRLPL-ELQEXXXXXXXXXXXXQSSGVTGGCGQL 250
                    L A+G V++MAASF N  Y+RLPL E +E              S  TGG G L
Sbjct:   197 GGNVVGELMAAGPVMVMAASFTNVAYERLPLDEHEEHLQSGGGGGGGNMYSEATGGGGGL 256

Query:   251 GDGGVPLPFHNLGIMNMGINYPFSG 275
                 +P+    +G+ +   N+  +G
Sbjct:   257 PFFNLPMSMPQIGVESWQGNHAGAG 281

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IDA

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0048440 "carpel development" evidence=IMP

GO:0048653 "anther development" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2129490 AT4G17800 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 77/205 (37%), Positives = 103/205 (50%)

Query:    72 NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLR 131
             NKPKPP+I+TR++ N LR+H+LE+++G D+ D V+TYARRR RG+C+LSG+G VTNV++R
Sbjct:    93 NKPKPPVIITRESANTLRAHILEVTNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIR 152

Query:   132 QPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXX 191
             QP                  +TL G FEI                    I+LA       
Sbjct:   153 QPSAAGAV------------VTLQGTFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVV 200

Query:   192 XXXXXXPLTASGTVVLMAASFANAVYDRLPLELQEXXXXXXXXXXXXQSSGVTGGCGQLG 251
                    LTA+G V+++AASF N  Y+RLPLE  E             +       G  G
Sbjct:   201 GGSVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQLGGGSNGGGNLFPEVAAG--G 258

Query:   252 DGGVPLPFHNLGI-MNMGINYPFSG 275
              GG  LPF NL + M   +  P  G
Sbjct:   259 GGG--LPFFNLPMNMQPNVQLPVEG 281

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2101916 AHL18 "AT3G60870" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 71/155 (45%), Positives = 90/155 (58%)

Query:    72 NKPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLR 131
             NKPK PIIVTRD+ NA R HV+EI++  D+++S++ +ARRR RGVC+L+G GAVTNVT+R
Sbjct:    70 NKPKAPIIVTRDSANAFRCHVMEITNACDVMESLAVFARRRQRGVCVLTGNGAVTNVTVR 129

Query:   132 QPPXXXXXXXXXXXXXXXVNITLHGRFEIXXXXXXXXXXXXXXXXXXXXIYLAXXXXXXX 191
             QP                  ++LHGRFEI                    +YLA       
Sbjct:   130 QPGGGV--------------VSLHGRFEILSLSGSFLPPPAPPAASGLKVYLAGGQGQVI 175

Query:   192 XXXXXXPLTASGTVVLMAASFANAVYDRLPLELQE 226
                   PLTAS  VV+MAASF NA Y+RLPLE +E
Sbjct:   176 GGSVVGPLTASSPVVVMAASFGNASYERLPLEEEE 210

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	8e-38
cd11378	113	cd11378, DUF296, Domain of unknown function found	4e-27

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  129 bits (328), Expect = 8e-38
 Identities = 59/131 (45%), Positives = 75/131 (57%), Gaps = 12/131 (9%)

Query: 88  LRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAG 147
            R HVL +  G D+V+S+  +AR+RG G  +LSG GAV+NVTLRQP   A          
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGV----- 55

Query: 148 GAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVV-GPLTASGTVV 206
               +TL GRFEILSL+GT    P    +G L + LA   GQVVGG +  G + A+G VV
Sbjct: 56  ----VTLEGRFEILSLSGTIS--PGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVV 109

Query: 207 LMAASFANAVY 217
           +   SF NA  
Sbjct: 110 VTELSFENARR 120

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  101 bits (255), Expect = 4e-27
 Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 11/124 (8%)

Query: 89  RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGG 148
           R  VL +  G D+V+S+  +AR  G    +LSG GAV+N TLR P        +      
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYET------ 54

Query: 149 AVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLM 208
              +T  GR EILSL+G   P    P  G L + LA   G+V+GG ++G L A GTV ++
Sbjct: 55  ---VTFEGRLEILSLSGNISPDDGKPS-GHLHVSLADSDGRVIGGHLLGALVA-GTVEVV 109

Query: 209 AASF 212
               
Sbjct: 110 IGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.94
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	90.81
smart00384	26	AT_hook DNA binding domain with preference for A/T	80.28

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=5e-29  Score=206.17  Aligned_cols=120  Identities=29%  Similarity=0.436  Sum_probs=104.2

Q ss_pred             ceEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeecc
Q 042221           88 LRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTS  167 (305)
Q Consensus        88 mr~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGti  167 (305)
                      ||+|++||++||||+++|.+||+++++..|+||++|+|++|+|++++. ++         .|.+.+++|+|||+||+|||
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~-~~---------~~~~~~~~g~~Ei~sl~G~i   70 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDP-PS---------YYEPLEFEGPFEIISLSGTI   70 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEET-TT---------EEEEEEEESEEEEEEEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecc-cC---------CcceEEecccEEEEEeEEEE
Confidence            799999999999999999999999999999999999999999999975 32         58899999999999999999


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeee
Q 042221          168 LPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDR  219 (305)
Q Consensus       168 sp~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeR  219 (305)
                      .+.+ .+++.||||+|++.||+|+||||....+ ..++||++..+....++|
T Consensus        71 ~~~~-g~~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~  120 (120)
T PF03479_consen   71 SPED-GKPFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR  120 (120)
T ss_dssp             EEET-TEEEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred             ECCC-CCCcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence            9843 3568999999999999999999995555 346888888887777766

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.94  E-value=5.1e-26  Score=195.97  Aligned_cols=126  Identities=17%  Similarity=0.234  Sum_probs=118.5

Q ss_pred             CCceEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeee
Q 042221           86 NALRSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTG  165 (305)
Q Consensus        86 ~~mr~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsG  165 (305)
                      ..-|.+++||++|+|++++|.+||+++.+..++++|+|+|++++||+++.+.+         +|.++++.++||||||.|
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~---------~y~~~~~~e~~EvlSL~G   77 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEK---------EYETIPVNEPLEVLSLLG   77 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCC---------ceEEEecCCcEEEEEecc
Confidence            44588999999999999999999999999889999999999999999998765         699999999999999999


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221          166 TSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL  224 (305)
Q Consensus       166 tisp~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~  224 (305)
                      ||...+   ++.|||++|++++|.++||||+++++.. ++||+|..+....++|.+++.
T Consensus        78 ~i~~~~---p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~~  132 (141)
T COG1661          78 NIALDD---PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDPT  132 (141)
T ss_pred             eeecCC---CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCCC
Confidence            999986   6999999999999999999999999988 899999999999999988873

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=90.81  E-value=0.097  Score=29.00  Aligned_cols=13  Identities=46%  Similarity=0.846  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCCCC
Q 042221           61 RRPRGRPAGSRNK   73 (305)
Q Consensus        61 kr~RGRP~GSknK   73 (305)
                      +|+||||+.+.+|
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            5899999987654

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=80.28  E-value=1.1  Score=29.17  Aligned_cols=15  Identities=33%  Similarity=0.680  Sum_probs=12.0

Q ss_pred             CCCCCCCCCCCCCCC
Q 042221           61 RRPRGRPAGSRNKPK   75 (305)
Q Consensus        61 kr~RGRP~GSknKpk   75 (305)
                      +|+||||+..++...
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            589999998777654

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	3e-26
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	7e-23
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	9e-18
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	8e-11
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	3e-08
3htn_A	149	Putative DNA binding protein; DUF269 family protei	1e-07

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  100 bits (250), Expect = 3e-26
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 19/152 (12%)

Query: 73  KPKPPIIVTRDTPNALRSHVLEISSGADIVDSVSTYARRRG-RGVCILSGAGAVTNVTLR 131
                + V+    +  R + L +  G ++   +  + ++   R   I    G++T+V LR
Sbjct: 3   GDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALR 62

Query: 132 QPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVV 191
                A               +L G FE++SL GT            L + ++   G ++
Sbjct: 63  YAGQEAT-------------TSLTGTFEVISLNGT-----LELTGEHLHLAVSDPYGVML 104

Query: 192 GGSVVGPLTASGTVVLMAASFANAVYDRLPLE 223
           GG ++   T   T+ L+        + R P  
Sbjct: 105 GGHMMPGCTVRTTLELVIGELPALTFSRQPCA 136

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 91.2 bits (226), Expect = 7e-23
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 19/137 (13%)

Query: 88  LRSHVLEISSGADIVDSVSTYARRRG-RGVCILSGAGAVTNVTLRQPPAGAGGSSSASIA 146
           +    L ++ G D+   +    ++       I S  G ++ + +R   + +         
Sbjct: 2   IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVST-------- 53

Query: 147 GGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVV 206
                + +   FEILSL+GT            L I +A  QG+V GG ++     + T  
Sbjct: 54  -----LQVSAPFEILSLSGT-----LTYQHCHLHIAVADAQGRVWGGHLLEGNLINTTAE 103

Query: 207 LMAASFANAVYDRLPLE 223
           LM   +    + R    
Sbjct: 104 LMIHHYPQHHFTREFDP 120

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 77.3 bits (190), Expect = 9e-18
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 12/136 (8%)

Query: 89  RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGG 148
           R+++  +  G +++  +  + ++ G    I++G G + N  +                  
Sbjct: 10  RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKV------ 63

Query: 149 AVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLM 208
              I L G +E++SL G        P      + L   +G V GG +V        + L 
Sbjct: 64  ---IPLKGSYELISLIGNVSLKDGEP-FVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ 119

Query: 209 AASFANAVYDRLPLEL 224
                    +R P + 
Sbjct: 120 --ELKGEKIERKPTKY 133

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 58.1 bits (140), Expect = 8e-11
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 13/133 (9%)

Query: 89  RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGG 148
           +  +L +  G D+V  +  +   +G     +S  GAV +  +                  
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEY-------- 61

Query: 149 AVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLM 208
            V   L    EILSL+G      + P        L G  G+V GG +      +  V ++
Sbjct: 62  -VKKELMEPLEILSLSGNVSMKDSKPFCH--IHVLLGKDGEVYGGHLFSAEVFACEVFVL 118

Query: 209 AASFANAVYDRLP 221
               +    +R  
Sbjct: 119 P--LSGEAPERAF 129

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 11/117 (9%)

Query: 89  RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGG 148
             +++ +  G +++ ++   AR          G G ++  T                   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGF----------YDFGRK 62

Query: 149 AVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTV 205
             +   +   E+ ++TG+       P        +  G  Q  GG ++G    +G+ 
Sbjct: 63  QFDPKTYRNVEMANMTGSIAWKEGKPSI-HAHGTVTDGTFQGAGGHLLGLTVGTGSC 118

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 89  RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGG 148
             +++ I++  +IV +++ + + +G     ++G GA+  +TLR                 
Sbjct: 16  NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDD------ 69

Query: 149 AVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGG 193
               T   + EI +LTG             L I +       + G
Sbjct: 70  ---KTFREQMEISNLTGNISSMNEQVYL-HLHITVGRSDYSALAG 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.97
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.96
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.96
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.96
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.96
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.94
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.51

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.97  E-value=2.6e-30  Score=218.12  Aligned_cols=121  Identities=18%  Similarity=0.324  Sum_probs=111.4

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeeccC
Q 042221           89 RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSL  168 (305)
Q Consensus        89 r~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGtis  168 (305)
                      |+|++||++||||+++|.+||+++++..|+++++|+|++|+||+++...+         .|..++++|+|||+||+|||+
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~---------~~~~~~~~g~~EIlsl~Gti~   80 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKK---------EYKVIPLKGSYELISLIGNVS   80 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTT---------EEEEEECCSEEEEEEEEEEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccC---------cceeEeecCCEEEEEeEEEEE
Confidence            79999999999999999999999988878889999999999999987654         578899999999999999999


Q ss_pred             CCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeecc
Q 042221          169 PPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLP  221 (305)
Q Consensus       169 p~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp  221 (305)
                      +.++ +++.||||+|+|.||+|+||||+..+ .. ++||++.+|.+..|+|+|
T Consensus        81 ~~~g-~p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~  130 (143)
T 2dt4_A           81 LKDG-EPFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP  130 (143)
T ss_dssp             EETT-EEEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC
T ss_pred             CCCC-CceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC
Confidence            9755 45899999999999999999999877 55 899999999999999999

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.96  E-value=1.9e-29  Score=216.11  Aligned_cols=128  Identities=22%  Similarity=0.380  Sum_probs=113.2

Q ss_pred             eeecCCCCCceEEEEEeCCCChHHHHHHHHHHhcCc-eEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeee
Q 042221           79 IVTRDTPNALRSHVLEISSGADIVDSVSTYARRRGR-GVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGR  157 (305)
Q Consensus        79 ~it~~s~~~mr~hVLrL~~GeDIvesI~~fArr~~~-aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGr  157 (305)
                      +++.++++.+|+|++||++||||+++|.+||+++++ ++||++++|+|++|+||+++...             .++++|+
T Consensus         9 ~~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-------------~~~~~g~   75 (154)
T 2hx0_A            9 TVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-------------TTSLTGT   75 (154)
T ss_dssp             ---CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-------------CEEEEEE
T ss_pred             eeccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-------------cEecCCc
Confidence            345678899999999999999999999999998865 78888999999999999998642             6789999


Q ss_pred             EEEEEeeeccCCCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221          158 FEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL  224 (305)
Q Consensus       158 FEILSLsGtisp~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~  224 (305)
                      |||+||+|||++.     ..||||+|++.||+|+||||+..+++..++||++..|....|+|.|+++
T Consensus        76 ~EIlsl~Gti~~~-----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e  137 (154)
T 2hx0_A           76 FEVISLNGTLELT-----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI  137 (154)
T ss_dssp             EEEEEEEEEEETT-----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred             EEEEEeeeeEeCC-----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCC
Confidence            9999999999985     5999999999999999999997555457999999999999999998764

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.96  E-value=3.8e-29  Score=211.46  Aligned_cols=119  Identities=23%  Similarity=0.299  Sum_probs=107.5

Q ss_pred             ceEEEEEeCCCChHHHHHHHHHHhcCc-eEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeec
Q 042221           88 LRSHVLEISSGADIVDSVSTYARRRGR-GVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGT  166 (305)
Q Consensus        88 mr~hVLrL~~GeDIvesI~~fArr~~~-aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGt  166 (305)
                      ||+|++||++||||+++|.+||+++++ ++||++++|+|++|+||+++...             .++++|+|||+||+||
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-------------~~~~~g~~EIlsl~Gt   68 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-------------TLQVSAPFEILSLSGT   68 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-------------EEEECSCEEEEEEEEE
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-------------cEecCCcEEEEEeEEE
Confidence            899999999999999999999999876 78888999999999999998642             6789999999999999


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221          167 SLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL  224 (305)
Q Consensus       167 isp~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~  224 (305)
                      |++.     ..||||+++|.||+|+||||++.+++..++||++..|.+..|+|+|+++
T Consensus        69 i~~~-----~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e  121 (142)
T 2p6y_A           69 LTYQ-----HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPN  121 (142)
T ss_dssp             ECSS-----CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETT
T ss_pred             EeCC-----CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCC
Confidence            9985     5999999999999999999997554567999999999999999999764

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.96  E-value=6e-30  Score=216.52  Aligned_cols=123  Identities=20%  Similarity=0.263  Sum_probs=112.4

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeeccC
Q 042221           89 RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSL  168 (305)
Q Consensus        89 r~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGtis  168 (305)
                      ++|++||++||||+++|.+||+++++..|+|+++|+|++|+||+++...+         .|..++++|+|||+||+|||+
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~---------~y~~~~~~g~~EIlsl~Gti~   80 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKK---------EYVKKELMEPLEILSLSGNVS   80 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTT---------EEEEEEECSCEEEEEEEEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCc---------ceeEEEecCcEEEEEeEEEEE
Confidence            69999999999999999999999988767779999999999999987654         578899999999999999999


Q ss_pred             CCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221          169 PPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL  224 (305)
Q Consensus       169 p~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~  224 (305)
                      +.++ .++.||||+|+ .||+|+||||++.+|  .++||++.+|.+..|+|+|+++
T Consensus        81 ~~dg-~p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e  132 (146)
T 2h6l_A           81 MKDS-KPFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ  132 (146)
T ss_dssp             EETT-EEEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred             CCCC-CceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence            9755 45899999999 999999999998886  5999999999999999999765

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.96  E-value=3.9e-29  Score=213.18  Aligned_cols=124  Identities=17%  Similarity=0.231  Sum_probs=112.8

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeeccC
Q 042221           89 RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSL  168 (305)
Q Consensus        89 r~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGtis  168 (305)
                      |.|++||++||||+++|.+||+++++..|+++++|+|++|+||+++...+         .|..++++|+|||+||+|||+
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~---------~y~~~~~~g~~EI~sl~Gti~   86 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTK---------AYDDKTFREQMEISNLTGNIS   86 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTC---------CEEEEEECSCEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcc---------cceeEEecCceEEEEeEEEEE
Confidence            89999999999999999999999999888889999999999999987654         588999999999999999999


Q ss_pred             CCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221          169 PPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL  224 (305)
Q Consensus       169 p~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~  224 (305)
                      +.++ .++.|||++|++.+|+|+||||+.+.| ..++||+|..+.. .++|.++++
T Consensus        87 ~~dG-~p~~HlH~sl~~~~G~v~gGHl~~g~V-~~t~Ei~i~~~~~-~~~R~~D~~  139 (149)
T 3htn_A           87 SMNE-QVYLHLHITVGRSDYSALAGHLLSAIQ-NGAGEFVVEDYSE-RISRTYNPD  139 (149)
T ss_dssp             EETT-EEEEEEEEEEECTTSBEEEEEEEEEEE-EEEEEEEEEECCS-CCEEEEETT
T ss_pred             ccCC-CceEEEEEEEECCCCCEEeEEeCCCEE-EEEEEEEEEEcCC-eeEEeeCCc
Confidence            9755 468999999999999999999998844 5689999999988 899988764

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.94  E-value=1e-26  Score=197.66  Aligned_cols=124  Identities=15%  Similarity=0.172  Sum_probs=111.1

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeeccC
Q 042221           89 RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSL  168 (305)
Q Consensus        89 r~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGtis  168 (305)
                      +.+++||++|+||+++|.+||+++++..++++++|++++++|++++...+         .|...+++ ++||+||+|||+
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~---------~y~~~~~~-~~Ei~sl~Gtis   82 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRK---------QFDPKTYR-NVEMANMTGSIA   82 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTT---------EEEEEEEE-EEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcC---------ccccEEec-CcEEEEEEEEEE
Confidence            67999999999999999999999999888899999999999999987654         58888898 899999999999


Q ss_pred             CCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221          169 PPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL  224 (305)
Q Consensus       169 p~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~  224 (305)
                      +.++ .++.|||++++|.+|+|+||||..+.|...++||++..+. ..++|.++++
T Consensus        83 ~~dG-~p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~  136 (147)
T 3hwu_A           83 WKEG-KPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE  136 (147)
T ss_dssp             EETT-EEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred             cCCC-CceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence            8664 5689999999999999999999988776569999999875 5999988664

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.51  E-value=4.2e-05  Score=48.17  Aligned_cols=17  Identities=59%  Similarity=1.052  Sum_probs=14.9

Q ss_pred             CCCCCCCCCCCCCCCCC
Q 042221           59 AGRRPRGRPAGSRNKPK   75 (305)
Q Consensus        59 ~~kr~RGRP~GSknKpk   75 (305)
                      ..|||||||.|||||.-
T Consensus         3 tpKrpRgRpkGSKNk~~   19 (26)
T 2ezd_A            3 TPKRPRGRPKGSKNKGA   19 (26)
T ss_dssp             SCCCCSSCCTTCCCCSC
T ss_pred             CCcCCCCCcCcccccCc
Confidence            46999999999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	4e-26
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	2e-17

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 98.4 bits (245), Expect = 4e-26
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 86  NALRSHVLEISSGADIVDSVSTYARRRG-RGVCILSGAGAVTNVTLRQPPAGAGGSSSAS 144
           +  R + L +  G ++   +  + ++   R   I    G++T+V LR     A       
Sbjct: 4   STARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA------- 56

Query: 145 IAGGAVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGT 204
                   +L G FE++SL GT            L + ++   G ++GG ++   T   T
Sbjct: 57  ------TTSLTGTFEVISLNGT-----LELTGEHLHLAVSDPYGVMLGGHMMPGCTVRTT 105

Query: 205 VVLMAASFANAVYDRLPLE 223
           + L+        + R P  
Sbjct: 106 LELVIGELPALTFSRQPCA 124

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 13/133 (9%)

Query: 89  RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGG 148
           +  +L +  G D+V  +  +   +G     +S  GAV +  +                  
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQE---------KKE 60

Query: 149 AVNITLHGRFEILSLTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLM 208
            V   L    EILSL+G      + P    + + L G  G+V GG +      +  V ++
Sbjct: 61  YVKKELMEPLEILSLSGNVSMKDSKPFC-HIHVLL-GKDGEVYGGHLFSAEVFACEVFVL 118

Query: 209 AASFANAVYDRLP 221
               +    +R  
Sbjct: 119 P--LSGEAPERAF 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.96
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.94

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=6.8e-29  Score=206.83  Aligned_cols=123  Identities=23%  Similarity=0.400  Sum_probs=112.7

Q ss_pred             CCCCceEEEEEeCCCChHHHHHHHHHHhcC-ceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEE
Q 042221           84 TPNALRSHVLEISSGADIVDSVSTYARRRG-RGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILS  162 (305)
Q Consensus        84 s~~~mr~hVLrL~~GeDIvesI~~fArr~~-~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILS  162 (305)
                      +.+..|.|++||++||||+++|.+||++++ +++||++++|++++|+|++|+...             ...++|+|||+|
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~~-------------~~~~~g~~Ei~s   68 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-------------TTSLTGTFEVIS   68 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-------------CEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCCC-------------cEEecCcEEEEE
Confidence            467889999999999999999999999886 588999999999999999998543             567999999999


Q ss_pred             eeeccCCCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221          163 LTGTSLPPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL  224 (305)
Q Consensus       163 LsGtisp~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~  224 (305)
                      |+|||.+.     ..|||++|++.+|+|+||||++++++++++||+|.+|.+..|+|.++++
T Consensus        69 l~G~I~~~-----~~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~  125 (136)
T d2hx0a1          69 LNGTLELT-----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI  125 (136)
T ss_dssp             EEEEEETT-----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred             EEEEeccC-----CCeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCC
Confidence            99999886     3799999999999999999999888888999999999999999998665

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=1.5e-27  Score=197.62  Aligned_cols=123  Identities=20%  Similarity=0.270  Sum_probs=112.1

Q ss_pred             eEEEEEeCCCChHHHHHHHHHHhcCceEEEEEEeeeeceEEEcCCCCCCCCCCcccccCcceeEeeeeeEEEEEeeeccC
Q 042221           89 RSHVLEISSGADIVDSVSTYARRRGRGVCILSGAGAVTNVTLRQPPAGAGGSSSASIAGGAVNITLHGRFEILSLTGTSL  168 (305)
Q Consensus        89 r~hVLrL~~GeDIvesI~~fArr~~~aicVLSaiGaVsnVTLRq~~~~~g~~~~a~l~g~y~~~tleGrFEILSLsGtis  168 (305)
                      |.|++||++||||+++|.+||+++++..|++|++|++++|+|++++...+         .|..+.++|+|||+||+|||.
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~---------~~~~~~~~g~~Ei~sl~G~i~   80 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKK---------EYVKKELMEPLEILSLSGNVS   80 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTT---------EEEEEEECSCEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCC---------ccceEecCCCEEEEEeEEEEE
Confidence            89999999999999999999999999999999999999999999987665         588999999999999999999


Q ss_pred             CCCCCCCCCeEEEEEeCCCCcEEceecCCceeecceEEEEEeeeccceeeeccccc
Q 042221          169 PPPAPPGAGGLTIYLAGGQGQVVGGSVVGPLTASGTVVLMAASFANAVYDRLPLEL  224 (305)
Q Consensus       169 p~~~~~~~~HLHISLAg~dGqViGGHL~G~LIAAt~VeVV~~SF~n~~yeRlp~e~  224 (305)
                      ..+++ ++.|+|+++++ +|+++||||..+++.  ++|+++.++.+..++|.|+++
T Consensus        81 ~~~g~-p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~R~~D~~  132 (138)
T d2h6la1          81 MKDSK-PFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPERAFDEQ  132 (138)
T ss_dssp             EETTE-EEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCBEEECTT
T ss_pred             cCCCC-cEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceEEecCCc
Confidence            87764 68999999997 799999999988775  478888899999999998654