Citrus Sinensis ID: 042244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MMINSDDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVPGGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALLQFPLLLDMYSSTYGRGIIIDNSVL
Secondary Structure (PSIPRED)
ccccccccccHHHccccHHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHccccHHHccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEEEccccccHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHccHHHHHHHHHHcccHHcccccccccHHHHHHHcccHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHEEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mminsddqeedeyCARYWPLYRMIEkndwrgvedfvtndpdaltaktiapgsmTIFHAIVELWVDVESDDATCLLDklaskvdpqtleqrddigyTALYQCAVKGNLRALKVLVKynpdltnkrdtldslPVIQAAYHGHKDTFQYLREVthgvdiysgndgaNMLSRLIDATLYDVALDLLKlyptigrdnidSRRIVLNALaekpyafasgsrLGHLQRLIYNLFAAAftvpggsdsrgipnllhekSFMIFAISDMLALFSSTTSVLMFLGILSSryaeddflvSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALLQFPLLLDMysstygrgiiidnsvl
Flexible Loop (DISEMBL)
mminsddqeedEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDklaskvdpqtleqRDDIGYTALYQCAVKGNLRALKVLVKYNPDltnkrdtldSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLyptigrdnidSRRIVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVPGGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALLQFPLLLDMYSSTYGRGIIIDNSVL
Low Complexity Region (SEG)
MMINSDDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVPGGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTlfallqfplllDMYSSTYGRGIIIDNSVL
Disordered region (IsUnstruct)
***********EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVPGGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALLQFPLLLDMYSSTYGRGIIID****
Disordered Region (DISOPRED)
MMIN****E**EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVP*GSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALLQFPLLLDMYSSTYGRGIIID****
Disordered Region (DISEMBL)
**********DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVPGGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALLQFPLLLDMYSSTYGRGIIIDNSVL
Disordered Region (DISPRO)
*MINSDDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVPGGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALLQFPLLLDMYSSTYGRGIII*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMINSDDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVPGGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALLQFPLLLDMYSSTYGRGIIIDNSVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q9D119	154	Protein phosphatase 1 reg	yes	no	0.220	0.525	0.345	0.0002
Q0JKV1	935	Potassium channel AKT1 OS	no	no	0.214	0.084	0.341	0.0005
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.214	0.084	0.341	0.0005

>sp|Q9D119|PPR27_MOUSE Protein phosphatase 1 regulatory subunit 27 OS=Mus musculus GN=Ppp1r27 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
           G  AL++  + GNL  +K+LVKY  D+ ++RD     P+  A   G+ D  +YL  ++ G
Sbjct: 64  GLAALHEAVLSGNLECVKLLVKYGADI-HQRDETGWTPLHIACSDGYPDIARYL--ISLG 120

Query: 154 VDIYSGNDGANMLSRLIDATLYDV 177
            D  + ND  ++ S LID    D+
Sbjct: 121 ADRDAANDDGDLPSDLIDPDFKDL 144

Inhibits phosphatase activity of protein phosphatase 1 (PP1) complexes.
Mus musculus (taxid: 10090)

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 78  LASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAY 137
           L   +DP    + D+ G+TAL+  A KGN + +++L++Y  D  N RD+   +P+ +A  
Sbjct: 586 LKRGMDPN---ESDNDGHTALHIAASKGNEQCVRLLLEYGAD-PNARDSEGKVPLWEALC 641

Query: 138 HGHKDTFQYLREVTHGVDIYSGNDG 162
             H    Q L  V  G D+ SG+ G
Sbjct: 642 EKHAAVVQLL--VEGGADLSSGDTG 664

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 78  LASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAY 137
           L   +DP    + D+ G+TAL+  A KGN + +++L++Y  D  N RD+   +P+ +A  
Sbjct: 586 LKRGMDPN---ESDNDGHTALHIAASKGNEQCVRLLLEYGAD-PNARDSEGKVPLWEALC 641

Query: 138 HGHKDTFQYLREVTHGVDIYSGNDG 162
             H    Q L  V  G D+ SG+ G
Sbjct: 642 EKHAAVVQLL--VEGGADLSSGDTG 664

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
255544802	590	ankyrin repeat-containing protein, putat	0.383	0.238	0.626	2e-42
296087932	655	unnamed protein product [Vitis vinifera]	0.717	0.403	0.396	1e-40
225449665	810	PREDICTED: uncharacterized protein LOC10	0.717	0.325	0.396	2e-40
224097650	396	predicted protein [Populus trichocarpa]	0.377	0.351	0.6	2e-40
224136692	743	predicted protein [Populus trichocarpa]	0.385	0.191	0.573	3e-39
225449663	757	PREDICTED: uncharacterized protein LOC10	0.714	0.347	0.375	1e-38
296087934	430	unnamed protein product [Vitis vinifera]	0.714	0.611	0.375	3e-38
296088578	718	unnamed protein product [Vitis vinifera]	0.369	0.189	0.583	4e-38
297737987	1855	unnamed protein product [Vitis vinifera]	0.385	0.076	0.601	5e-38
359477037	766	PREDICTED: uncharacterized protein LOC10	0.369	0.177	0.583	6e-38

>gi|255544802|ref|XP_002513462.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223547370|gb|EEF48865.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 112/142 (78%), Gaps = 1/142 (0%)

Query: 226 LFAAAFTVPGGSDS-RGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDD 284
           +FAAAFTVPGG++S +GIP  L+E +F+IFAISD L LFSS+TS+LMFLGIL+SRY+E D
Sbjct: 444 VFAAAFTVPGGNNSDQGIPIYLNETAFVIFAISDALGLFSSSTSLLMFLGILTSRYSEGD 503

Query: 285 FLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALL 344
           FL +LP +L IGL+ LFFSIASM+ AF A  H+ L H+   + +PI LV C PVTLFALL
Sbjct: 504 FLKALPMRLSIGLITLFFSIASMLAAFSAAFHLVLFHRVKWIAVPIGLVACAPVTLFALL 563

Query: 345 QFPLLLDMYSSTYGRGIIIDNS 366
           QFPLL +M SST+GR +   +S
Sbjct: 564 QFPLLSEMISSTFGRSVFRKHS 585

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087932|emb|CBI35215.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 165/303 (54%), Gaps = 39/303 (12%)

Query: 95  YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR------ 148
           +  + Q   +GN+     ++KY P L  K D  D      A  +  +  F  L       
Sbjct: 347 HHTVIQAVKQGNVDFATEMIKYTPQLVQKTDINDRNIFFIAILNRQEKIFSLLHGLNNVK 406

Query: 149 --EVTHGVDIYSGNDGANMLSRLIDATLYD----VALDLLK----------LYPTIGRD- 191
             ++T  VD + GN+  ++ + L  A   D     AL + +          + P I +D 
Sbjct: 407 KMKMTSNVDRF-GNNMLHLAAMLAPANQLDGISGAALQMQRELQWFKEVESIVPPICKDL 465

Query: 192 -NIDSRR-----------IVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVPGGSDS 239
            N D +R           +V           AS S +  L  ++  +FAAAFT+PGG+D 
Sbjct: 466 VNADGKRPSELFTEQHANLVKEGEKWMKDIAASSSFVAAL--IVTIMFAAAFTIPGGNDD 523

Query: 240 RGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVA 299
            G P  L    FM+F ISD ++LFS+TTSVLMFLGIL+S+YAE+ FL  LP KLIIGL  
Sbjct: 524 TGAPIFLGNDLFMVFIISDSISLFSATTSVLMFLGILTSQYAENKFLTRLPTKLIIGLST 583

Query: 300 LFFSIASMMVAFGATVHISLSHKWS-LVIIPIALVGCVPVTLFALLQFPLLLDMYSSTYG 358
           LFFSIA+MM+AF A + I L  + + +VIIPI L+ CVPVTLF LLQFPLL++++ STYG
Sbjct: 584 LFFSIATMMIAFCAALAILLKGRSTKVVIIPIILLACVPVTLFVLLQFPLLVEIFISTYG 643

Query: 359 RGI 361
            GI
Sbjct: 644 PGI 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449665|ref|XP_002263931.1| PREDICTED: uncharacterized protein LOC100245348 [Vitis vinifera]

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 165/303 (54%), Gaps = 39/303 (12%)

Query: 95  YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR------ 148
           +  + Q   +GN+     ++KY P L  K D  D      A  +  +  F  L       
Sbjct: 502 HHTVIQAVKQGNVDFATEMIKYTPQLVQKTDINDRNIFFIAILNRQEKIFSLLHGLNNVK 561

Query: 149 --EVTHGVDIYSGNDGANMLSRLIDATLYD----VALDLLK----------LYPTIGRD- 191
             ++T  VD + GN+  ++ + L  A   D     AL + +          + P I +D 
Sbjct: 562 KMKMTSNVDRF-GNNMLHLAAMLAPANQLDGISGAALQMQRELQWFKEVESIVPPICKDL 620

Query: 192 -NIDSRR-----------IVLNALAEKPYAFASGSRLGHLQRLIYNLFAAAFTVPGGSDS 239
            N D +R           +V           AS S +  L  ++  +FAAAFT+PGG+D 
Sbjct: 621 VNADGKRPSELFTEQHANLVKEGEKWMKDIAASSSFVAAL--IVTIMFAAAFTIPGGNDD 678

Query: 240 RGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLIIGLVA 299
            G P  L    FM+F ISD ++LFS+TTSVLMFLGIL+S+YAE+ FL  LP KLIIGL  
Sbjct: 679 TGAPIFLGNDLFMVFIISDSISLFSATTSVLMFLGILTSQYAENKFLTRLPTKLIIGLST 738

Query: 300 LFFSIASMMVAFGATVHISLSHKWS-LVIIPIALVGCVPVTLFALLQFPLLLDMYSSTYG 358
           LFFSIA+MM+AF A + I L  + + +VIIPI L+ CVPVTLF LLQFPLL++++ STYG
Sbjct: 739 LFFSIATMMIAFCAALAILLKGRSTKVVIIPIILLACVPVTLFVLLQFPLLVEIFISTYG 798

Query: 359 RGI 361
            GI
Sbjct: 799 PGI 801

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097650|ref|XP_002311027.1| predicted protein [Populus trichocarpa] gi|222850847|gb|EEE88394.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 111/140 (79%), Gaps = 1/140 (0%)

Query: 222 LIYNLFAAAFTVPGGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYA 281
           +I  +F AAFTVPGG+   G P  LHEKSF+IF ISD ++LF+S+TSVLMFLGIL+SRY+
Sbjct: 249 IITVMFTAAFTVPGGNKDTGFPVFLHEKSFLIFIISDAISLFASSTSVLMFLGILTSRYS 308

Query: 282 EDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLF 341
           E+DFL+S PRKL+IGL  LF S+A+MMVAF A + I +  +   V+IP++L+  +PVTLF
Sbjct: 309 ENDFLISFPRKLVIGLSTLFISVAAMMVAFCAALRIVMDGRLE-VVIPVSLLAGIPVTLF 367

Query: 342 ALLQFPLLLDMYSSTYGRGI 361
            LLQFPLL++++ STYG GI
Sbjct: 368 ILLQFPLLVEIFMSTYGPGI 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/143 (57%), Positives = 108/143 (75%), Gaps = 1/143 (0%)

Query: 226 LFAAAFTVPGGSD-SRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDD 284
           +FAA FTVPGG+D S+G P +L   SF++FA++D  ALFSS TS+LMFL IL+SRYAE+D
Sbjct: 597 MFAAIFTVPGGNDNSKGTPLVLASTSFIVFAVADAFALFSSVTSILMFLSILTSRYAEED 656

Query: 285 FLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALL 344
           F+ SLP++L++GL  LF SIA+M+VAF AT  I L H+ + +++PI+L   VPVTLFA L
Sbjct: 657 FVESLPKRLVVGLATLFCSIAAMLVAFAATFCIVLDHRLAWIVVPISLGSSVPVTLFAFL 716

Query: 345 QFPLLLDMYSSTYGRGIIIDNSV 367
           QFPL +DM  S+YG GI    S 
Sbjct: 717 QFPLFVDMIHSSYGAGIFARKST 739

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449663|ref|XP_002263810.1| PREDICTED: uncharacterized protein LOC100260956 [Vitis vinifera]

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 167/312 (53%), Gaps = 49/312 (15%)

Query: 95  YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTH-- 152
           + A+ Q   KGN+  +  ++K  P+L    D  D      A  +  +  F  L  +T+  
Sbjct: 449 HQAVIQAVKKGNVEFVTRMIKSIPELVWNGDINDRNIFSIAILNRQEKIFNLLHGLTNVK 508

Query: 153 GVDIYSGND--GANML--------SRLIDATLYDVALDLLK----------LYPTIGRDN 192
            + + S +D  G NML        S  +D  +   AL + +          + P I +D 
Sbjct: 509 KMKVTSADDRFGNNMLHLAAMLAPSDQLDG-ISGAALQMQRELQWFKEVESIVPPICKD- 566

Query: 193 IDSRRIVLNALAEKPYAFASGSRLGHLQR------------------LIYNLFAAAFTVP 234
                 VLN+  +KP    S      ++                   ++  +FAAAFT+P
Sbjct: 567 ------VLNSDGKKPSEVFSQQHANLVKEGEKWMKEIATSSSFVAALIVTIMFAAAFTIP 620

Query: 235 GGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLI 294
           GG++ +G P  L +  FM+F ISD ++LFS+TTSVLMFLGIL+S+YAE+ FL  LP KLI
Sbjct: 621 GGNNDKGAPIFLDDPLFMVFIISDSISLFSATTSVLMFLGILTSQYAENKFLTRLPTKLI 680

Query: 295 IGLVALFFSIASMMVAFGATVHISLSHKWS-LVIIPIALVGCVPVTLFALLQFPLLLDMY 353
           IGL  LF  IA+MM+AF A + I L    + +V+IPI L+ CVPVTLFALLQFPLL++++
Sbjct: 681 IGLSTLFICIAAMMIAFCAALAILLKKSSTKVVMIPIILLACVPVTLFALLQFPLLVNIF 740

Query: 354 SSTYGRGIIIDN 365
            STYG GI   N
Sbjct: 741 ISTYGPGIFDRN 752

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087934|emb|CBI35217.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 167/312 (53%), Gaps = 49/312 (15%)

Query: 95  YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTH-- 152
           + A+ Q   KGN+  +  ++K  P+L    D  D      A  +  +  F  L  +T+  
Sbjct: 122 HQAVIQAVKKGNVEFVTRMIKSIPELVWNGDINDRNIFSIAILNRQEKIFNLLHGLTNVK 181

Query: 153 GVDIYSGND--GANML--------SRLIDATLYDVALDLLK----------LYPTIGRDN 192
            + + S +D  G NML        S  +D  +   AL + +          + P I +D 
Sbjct: 182 KMKVTSADDRFGNNMLHLAAMLAPSDQLDG-ISGAALQMQRELQWFKEVESIVPPICKD- 239

Query: 193 IDSRRIVLNALAEKPYAFASGSRLGHLQR------------------LIYNLFAAAFTVP 234
                 VLN+  +KP    S      ++                   ++  +FAAAFT+P
Sbjct: 240 ------VLNSDGKKPSEVFSQQHANLVKEGEKWMKEIATSSSFVAALIVTIMFAAAFTIP 293

Query: 235 GGSDSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLI 294
           GG++ +G P  L +  FM+F ISD ++LFS+TTSVLMFLGIL+S+YAE+ FL  LP KLI
Sbjct: 294 GGNNDKGAPIFLDDPLFMVFIISDSISLFSATTSVLMFLGILTSQYAENKFLTRLPTKLI 353

Query: 295 IGLVALFFSIASMMVAFGATVHISLSHKWS-LVIIPIALVGCVPVTLFALLQFPLLLDMY 353
           IGL  LF  IA+MM+AF A + I L    + +V+IPI L+ CVPVTLFALLQFPLL++++
Sbjct: 354 IGLSTLFICIAAMMIAFCAALAILLKKSSTKVVMIPIILLACVPVTLFALLQFPLLVNIF 413

Query: 354 SSTYGRGIIIDN 365
            STYG GI   N
Sbjct: 414 ISTYGPGIFDRN 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088578|emb|CBI37569.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 104/137 (75%), Gaps = 1/137 (0%)

Query: 226 LFAAAFTVPGGS-DSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDD 284
           +F  AFT+PGG+ +  GIP  +  K+FM+F  SD L+LFSS+TSVLMFLGIL+SRYA +D
Sbjct: 573 MFTTAFTLPGGTKNDTGIPVFIKSKAFMVFIASDALSLFSSSTSVLMFLGILTSRYAAED 632

Query: 285 FLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALL 344
           FL SLP KLIIGL +LFFSI SMMVAFG+ + + L  + S +  PI  + C+P+T FALL
Sbjct: 633 FLKSLPIKLIIGLSSLFFSIVSMMVAFGSAIFVVLCQELSWISFPIIALACIPITFFALL 692

Query: 345 QFPLLLDMYSSTYGRGI 361
           QFPLL+++ + TYGR I
Sbjct: 693 QFPLLVEIVTCTYGRSI 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/143 (60%), Positives = 106/143 (74%), Gaps = 1/143 (0%)

Query: 226 LFAAAFTVPGGSDS-RGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDD 284
           +FAAAF+VPGG+D   G P  L +KSF++FAISD LALFSS TS+L+FL IL+SRYAE+D
Sbjct: 555 MFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEED 614

Query: 285 FLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALL 344
           FL SLP +LIIGL  LF S+A+MM+AF AT+ I L  +   V  P+ALV CVPVTLF LL
Sbjct: 615 FLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLL 674

Query: 345 QFPLLLDMYSSTYGRGIIIDNSV 367
           +FPL +DM S  Y   II   +V
Sbjct: 675 KFPLFIDMISHRYRSSIIFRPNV 697

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477037|ref|XP_002275355.2| PREDICTED: uncharacterized protein LOC100250623 [Vitis vinifera]

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 104/137 (75%), Gaps = 1/137 (0%)

Query: 226 LFAAAFTVPGGS-DSRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDD 284
           +F  AFT+PGG+ +  GIP  +  K+FM+F  SD L+LFSS+TSVLMFLGIL+SRYA +D
Sbjct: 621 MFTTAFTLPGGTKNDTGIPVFIKSKAFMVFIASDALSLFSSSTSVLMFLGILTSRYAAED 680

Query: 285 FLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTLFALL 344
           FL SLP KLIIGL +LFFSI SMMVAFG+ + + L  + S +  PI  + C+P+T FALL
Sbjct: 681 FLKSLPIKLIIGLSSLFFSIVSMMVAFGSAIFVVLCQELSWISFPIIALACIPITFFALL 740

Query: 345 QFPLLLDMYSSTYGRGI 361
           QFPLL+++ + TYGR I
Sbjct: 741 QFPLLVEIVTCTYGRSI 757

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.377	0.207	0.446	4.7e-37
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.372	0.219	0.439	9.2e-32
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.358	0.218	0.470	1.1e-31
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.279	0.296	0.495	5.8e-24
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.293	0.188	0.449	3.5e-23
UNIPROTKB|G3MY56	159	PPP1R27 "Uncharacterized prote	0.233	0.540	0.344	6.4e-07
MGI|MGI:1915951	154	Ppp1r27 "protein phosphatase 1	0.266	0.636	0.333	6.4e-07
RGD|1308861	154	Ppp1r27 "protein phosphatase 1	0.233	0.558	0.344	1.4e-06
UNIPROTKB|Q86WC6	154	PPP1R27 "Protein phosphatase 1	0.233	0.558	0.344	2.2e-06
UNIPROTKB|E2R515	154	PPP1R27 "Uncharacterized prote	0.220	0.525	0.345	2.9e-06

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.7e-37, Sum P(2) = 4.7e-37
 Identities = 63/141 (44%), Positives = 90/141 (63%)

Query:   227 FAAAFTVPGGSD--SRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDD 284
             FAA FTVPGG+D  S+G P  L ++ F+IF +SD+++ F+S TSVL+FLGIL++RY+ DD
Sbjct:   524 FAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFLGILTARYSFDD 583

Query:   285 FLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTXXXXX 344
             FLV LP K+I GL  LF SIA+M++AF + +   +  +   ++ P  L  C+P       
Sbjct:   584 FLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLL 643

Query:   345 XXXXXXDMYSSTYGRGIIIDN 365
                   +M  STYG+GI   N
Sbjct:   644 QYPLLKEMIFSTYGKGIFDRN 664

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 9.2e-32, Sum P(2) = 9.2e-32
 Identities = 62/141 (43%), Positives = 85/141 (60%)

Query:   227 FAAAFTVPGGSD--SRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDD 284
             FAA FTVPGG+D  S G P   HE+ F+IF +SD+++ F++ TSVL+FLGIL++RYA DD
Sbjct:   482 FAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLIFLGILTARYAFDD 541

Query:   285 FLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTXXXXX 344
             FL SLP  +I GL  LF SIA+M+VAF + +    +  W  ++ P     C P       
Sbjct:   542 FLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDPW--IVAPTIFFACFPALLFVMI 599

Query:   345 XXXXXXDMYSSTYGRGIIIDN 365
                   ++  STYG+ I   N
Sbjct:   600 QYPLLKELIFSTYGKRIFDRN 620

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 63/134 (47%), Positives = 84/134 (62%)

Query:   227 FAAAFTVPGGSD-SRGIPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDF 285
             F A FTVPGG D + G P +L++  F  F  +D LA F+S  SVL+FL IL+SRY+ DDF
Sbjct:   459 FQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDF 518

Query:   286 LVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCVPVTXXXXXX 345
             +VSLPRK+I+G   LF SIASM+VAF  ++  S+ HK +LV  P+  +   P        
Sbjct:   519 IVSLPRKMILGQSILFISIASMLVAFITSLSASMRHKPALVY-PLKPLASFPSLLFLMLQ 577

Query:   346 XXXXXDMYSSTYGR 359
                  +M SSTYG+
Sbjct:   578 YPLLKEMISSTYGK 591

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
 Identities = 55/111 (49%), Positives = 76/111 (68%)

Query:   226 LFAAAFTVPGGSDSRG------IPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSSR 279
             +FAAAFT+PGG+D+ G       P    E  F +F ISD +AL SS TS+++FL IL+SR
Sbjct:   195 VFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSR 254

Query:   280 YAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSH--KWSLVII 328
             YAE  F  +LP KL++GL+ALF SI SM++AF AT+ +      KWSL+++
Sbjct:   255 YAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKWSLILL 305

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
 Identities = 53/118 (44%), Positives = 73/118 (61%)

Query:   226 LFAAAFTVPGGSDSRG-------IPNLLHEKSFMIFAISDMLALFSSTTSVLMFLGILSS 278
             +FAAA T+PGG+D  G        PN      F IF +SD +ALFSS  S+++FL I +S
Sbjct:   419 VFAAAITIPGGNDDSGDKANTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTS 478

Query:   279 RYAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHISLSHKWSLVIIPIALVGCV 336
             RYAE+DF   LP KL+ GL ALF SI SM++AF  ++ +    K SL ++   L+ C+
Sbjct:   479 RYAEEDFRYDLPTKLMFGLSALFISIISMILAFTFSMILIRVEKASLSLV---LISCL 533

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G3MY56 PPP1R27 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query:    94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
             G  AL++  + GNL  +K+LVKY  D+ ++RD     P+  A   G+ D  +YL  ++ G
Sbjct:    69 GLAALHEAVLSGNLECVKLLVKYGADI-HQRDETGWTPLHIACSDGYPDIARYL--ISLG 125

Query:   154 VDIYSGNDGANMLSRLIDATLYDVALDLLK 183
              D  + ND  ++ S LID    D+ ++L K
Sbjct:   126 ADREAANDDGDLPSDLIDPEFKDL-VELFK 154

GO:0019902 "phosphatase binding" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

MGI|MGI:1915951 Ppp1r27 "protein phosphatase 1, regulatory subunit 27" [Mus musculus (taxid:10090)]

 Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 35/105 (33%), Positives = 55/105 (52%)

Query:    79 ASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYH 138
             A KV   T+      G  AL++  + GNL  +K+LVKY  D+ ++RD     P+  A   
Sbjct:    52 ARKVSLDTIHPS---GLAALHEAVLSGNLECVKLLVKYGADI-HQRDETGWTPLHIACSD 107

Query:   139 GHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLK 183
             G+ D  +YL  ++ G D  + ND  ++ S LID    D+ ++L K
Sbjct:   108 GYPDIARYL--ISLGADRDAANDDGDLPSDLIDPDFKDL-VELFK 149

GO:0004864 "protein phosphatase inhibitor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0019902 "phosphatase binding" evidence=ISO

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

RGD|1308861 Ppp1r27 "protein phosphatase 1, regulatory subunit 27" [Rattus norvegicus (taxid:10116)]

 Score = 118 (46.6 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query:    94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
             G  AL++  + GNL  +K+LVKY  D+ ++RD     P+  A   G+ D  +YL  ++ G
Sbjct:    64 GLAALHEAVLSGNLECVKLLVKYGADI-HQRDETGWTPLHIACSDGYPDIARYL--ISLG 120

Query:   154 VDIYSGNDGANMLSRLIDATLYDVALDLLK 183
              D  + ND  ++ S LID    D+ ++L K
Sbjct:   121 ADRDATNDDGDLPSDLIDPDFKDL-VELFK 149

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA;ISO

GO:0019902 "phosphatase binding" evidence=IEA;ISO

UNIPROTKB|Q86WC6 PPP1R27 "Protein phosphatase 1 regulatory subunit 27" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query:    94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
             G  AL++  + GNL  +K+LVKY  D+ ++RD     P+  A   G+ D  +YL  ++ G
Sbjct:    64 GLAALHEAVLSGNLECVKLLVKYGADI-HQRDEAGWTPLHIACSDGYPDIARYL--ISLG 120

Query:   154 VDIYSGNDGANMLSRLIDATLYDVALDLLK 183
              D  + ND  ++ S LID   Y   ++L K
Sbjct:   121 ADRDATNDDGDLPSDLIDPD-YKELVELFK 149

GO:0004864 "protein phosphatase inhibitor activity" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IDA

GO:0010923 "negative regulation of phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2R515 PPP1R27 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 115 (45.5 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
             G  AL++  + GNL  +K+LVKY  D+ ++RD     P+  A   G+ D  +YL  ++ G
Sbjct:    64 GLAALHEAVLSGNLECVKLLVKYGADI-HQRDETGWTPLHIACSDGYPDIARYL--ISLG 120

Query:   154 VDIYSGNDGANMLSRLIDATLYDV 177
              D  + ND  ++ S LID    D+
Sbjct:   121 ADRDATNDDGDLPSDLIDPDFKDL 144

GO:0019902 "phosphatase binding" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 76.4 bits (189), Expect = 3e-17
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 227 FAAAFTVPGG------SDSRGIPNLLHEKS-FMIFAISDMLALFSSTTSVLMFLGILSSR 279
           FAA FT PGG          G P L  +   F  F +S+ +A  +S  +V++ L      
Sbjct: 23  FAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNTIAFVASLVAVILLL------ 76

Query: 280 YAEDDFLVSLPRKLIIGLVALFFSIASMMVAFGATVHI 317
           Y    F   LPR L+  L  L+ S+ S+MVAF A  + 
Sbjct: 77  YIVPSFSRRLPR-LLALLTLLWLSLLSLMVAFAAGSYR 113

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 96  TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVD 155
           TAL+  A  GNL  +K+L+++  D+ N +D   +  +  AA +G+ +  + L E  HG D
Sbjct: 30  TALHLAARNGNLEIVKLLLEHGADV-NAKDKDGNTALHLAARNGNLEIVKLLLE--HGAD 86

Query: 156 I 156
           I
Sbjct: 87  I 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 89  QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR 148
            RD+ G T L+  A  G+L  +K+L++   D+ N +D     P+  AA +GH +  + L 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLL- 59

Query: 149 EVTHGVDIYSGN 160
            +  G D+ + +
Sbjct: 60  -LEKGADVNARD 70

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           G TAL++ A+ G L  +K L++   D+ N+ D   +  +  AA +G+ +  + L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 98  LYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI 156
           L+  A  GNL  +K+L++   D+ N  DT     +  AA +G+ +  + L  + HG D+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV-NLGDT--DTALHLAARNGNLEIVKLL--LEHGADV 54

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 74  LLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI 133
           LL+K A       +  RD  G T L+  A  GNL  +K+L+K+  D+ N RD     P+ 
Sbjct: 59  LLEKGAD------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLH 111

Query: 134 QAAYHGHKDTFQYL 147
            AA +GH +  + L
Sbjct: 112 LAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.93
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.93
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.92
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.88
KOG0508	615	consensus Ankyrin repeat protein [General function	99.88
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.86
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.86
PHA02730	672	ankyrin-like protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
PHA02917	661	ankyrin-like protein; Provisional	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.84
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
PHA02741	169	hypothetical protein; Provisional	99.83
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
PHA02730	672	ankyrin-like protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
PHA02792	631	ankyrin-like protein; Provisional	99.8
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
PF13962	113	PGG: Domain of unknown function	99.79
KOG0514	452	consensus Ankyrin repeat protein [General function	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.78
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.64
PHA02792	631	ankyrin-like protein; Provisional	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.51
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.46
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.43
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.41
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.37
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.28
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.26
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.26
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.09
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.67
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.66
KOG0522	560	consensus Ankyrin repeat protein [General function	98.6
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.54
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.51
PF13606	30	Ank_3: Ankyrin repeat	98.49
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.44
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.42
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.4
PF13606	30	Ank_3: Ankyrin repeat	98.35
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.33
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.31
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.29
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.24
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.04
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.97
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.94
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.94
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.89
KOG2384	223	consensus Major histocompatibility complex protein	97.62
KOG0511	516	consensus Ankyrin repeat protein [General function	97.55
KOG2384	223	consensus Major histocompatibility complex protein	97.43
KOG0511	516	consensus Ankyrin repeat protein [General function	97.4
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.2
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.05
KOG2505	591	consensus Ankyrin repeat protein [General function	94.07
KOG2505	591	consensus Ankyrin repeat protein [General function	94.05
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.94
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	86.5
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	85.22
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	80.95

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-34  Score=233.25  Aligned_cols=174  Identities=21%  Similarity=0.133  Sum_probs=82.5

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcH
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTA   97 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tp   97 (368)
                      ++.+.+++......++++++.+|..++.+.|.+|+||||+||+.|+        .+++++|++.- ...++.+|+.||||
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~--------~eiv~fLlsq~-nv~~ddkDdaGWtP   75 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGH--------VEIVYFLLSQP-NVKPDDKDDAGWTP   75 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCc--------hhHHHHHHhcC-CCCCCCccccCCch
Confidence            3444444444444445555544433323333345555555555555        45555544321 22344444445555


Q ss_pred             HHHHHHcCCHHHHHHHHhh-CCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchH
Q 042244           98 LYQCAVKGNLRALKVLVKY-NPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYD  176 (368)
Q Consensus        98 Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~  176 (368)
                      ||.|++.|+.++|+.|+.+ ++++ +..++.|+||||+|+.+|+.+++++|++.++.... +|+.|+||||.|+.-|+.+
T Consensus        76 lhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~-kD~~~qtplHRAAavGklk  153 (226)
T KOG4412|consen   76 LHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRI-KDKQGQTPLHRAAAVGKLK  153 (226)
T ss_pred             hhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcc-cccccCchhHHHHhccchh
Confidence            5555555555555555544 3332 44444455555555555555555555555444443 4455555555555555555


Q ss_pred             HHHHHHHhCCcccccCCCCCCcHHHHH
Q 042244          177 VALDLLKLYPTIGRDNIDSRRIVLNAL  203 (368)
Q Consensus       177 ~~~~Ll~~~~~~~~~~~~~g~Tpl~l~  203 (368)
                      ++++|+..+ ...+.+|+.|+||||.+
T Consensus       154 vie~Li~~~-a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  154 VIEYLISQG-APLNTQDKYGFTPLHHA  179 (226)
T ss_pred             hHHHHHhcC-CCCCcccccCccHHHHH
Confidence            555444443 44444455555555544

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-34  Score=230.60  Aligned_cols=178  Identities=17%  Similarity=0.117  Sum_probs=161.1

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      +.+|.||||.|+..|+.++++.|+.. |+......|+.|+||||+||..|+        .|+|+.|+.+. ..+++.++.
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlhia~s~g~--------~evVk~Ll~r~-~advna~tn  104 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLHIAASNGN--------DEVVKELLNRS-GADVNATTN  104 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhhhhhhcCc--------HHHHHHHhcCC-CCCcceecC
Confidence            44799999999999999999999974 333224448999999999999999        99999999994 478999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      .|.|+||+|+..|+.+++++|++++ ..++.+|..|+||||-|+..|+.+++++|+..++..+. +|+.|+||||.|...
T Consensus       105 ~G~T~LHyAagK~r~eIaqlLle~g-a~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~-qDk~G~TpL~~al~e  182 (226)
T KOG4412|consen  105 GGQTCLHYAAGKGRLEIAQLLLEKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT-QDKYGFTPLHHALAE  182 (226)
T ss_pred             CCcceehhhhcCChhhHHHHHHhcC-CCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCc-ccccCccHHHHHHhc
Confidence            9999999999999999999999999 56699999999999999999999999999999988776 999999999999999


Q ss_pred             CchHHHHHHHHhCCcccccCCCCCCcHHHHHh
Q 042244          173 TLYDVALDLLKLYPTIGRDNIDSRRIVLNALA  204 (368)
Q Consensus       173 ~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~  204 (368)
                      |+.++...|.+.+ ++....|++| ||+..+.
T Consensus       183 ~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  183 GHPDVAVLLVRAG-ADTDREDKEG-TALRIAC  212 (226)
T ss_pred             cCchHHHHHHHhc-cceeeccccC-chHHHHH
Confidence            9999999999888 8899999988 9987654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.5e-29  Score=228.70  Aligned_cols=179  Identities=18%  Similarity=0.088  Sum_probs=158.4

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ..+..|.||||.|+..|+.++++.|++.+.+..    ..+|+||||+|+..|+        .++++.|++.+  ..++.+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n----~~d~~TpLh~Aa~~g~--------~eiV~lLL~~G--advn~~   90 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKN----LLENEFPLHQAATLED--------TKIVKILLFSG--MDDSQF   90 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc----CCCCCCHHHHHHHCCC--------HHHHHHHHHCC--CCCCCC
Confidence            356789999999999999999999999875542    2357999999999999        99999999988  778999


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCC-CcHHHHHHhhCCHHHHHHHHhhCCCCccccC-CCCchHHHH
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLD-SLPVIQAAYHGHKDTFQYLREVTHGVDIYSG-NDGANMLSR  168 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~  168 (368)
                      |..|+||||+|+..|+.+++++|++.++++ +.++..| .||||+|+..|+.+++++|+++++..   .| ..|.||||+
T Consensus        91 d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~  166 (284)
T PHA02791         91 DDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHI  166 (284)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCccHHHH
Confidence            999999999999999999999999999776 6778877 59999999999999999999986543   23 358999999


Q ss_pred             HHHhCchHHHHHHHHhCCcccccCCCCCCcH-HHHHhcCCC
Q 042244          169 LIDATLYDVALDLLKLYPTIGRDNIDSRRIV-LNALAEKPY  208 (368)
Q Consensus       169 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tp-l~l~~~~~~  208 (368)
                      |++.|+.++++.|++.+ ...+.+|..|.|| ||.|+++.+
T Consensus       167 Aa~~g~~eiv~lLL~~g-Ad~n~~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        167 TIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             HHHcCCHHHHHHHHHCC-CCCCcccCCCCChHHHHHHHcCC
Confidence            99999999999999986 7888999999987 999988753

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=4.6e-30  Score=244.00  Aligned_cols=188  Identities=16%  Similarity=0.092  Sum_probs=167.8

Q ss_pred             CccchhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCch
Q 042244            6 DDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus         6 ~~~~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      ...+.+.|.+|.|+||.|+.+++.++++.|++++.+.. ..-..-+.||||+|+++|+        ..+|+.|++++  +
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn-~~gG~l~stPLHWAar~G~--------~~vv~lLlqhG--A  136 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVN-AIGGVLGSTPLHWAARNGH--------ISVVDLLLQHG--A  136 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCcc-ccCCCCCCCcchHHHHcCc--------HHHHHHHHHcC--C
Confidence            34455666799999999999999999999999976553 3323668999999999999        99999999999  9


Q ss_pred             hhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchH
Q 042244           86 TLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANM  165 (368)
Q Consensus        86 ~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  165 (368)
                      +++.+|.+|.+|+|+|++.|+.-.+-+|+.++.+ ++.+|++|+||||||+.+|....++.|++.++......|++|+||
T Consensus       137 dpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~Tp  215 (600)
T KOG0509|consen  137 DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTP  215 (600)
T ss_pred             CCceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCch
Confidence            9999999999999999999999999999999955 499999999999999999988879999999988877455999999


Q ss_pred             HHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          166 LSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       166 Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      ||+|+..|+.+++. |+.+++...+..|.+|+||+++|.++
T Consensus       216 LHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  216 LHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999999999999 77777788899999999999999776

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=9.9e-28  Score=218.20  Aligned_cols=170  Identities=14%  Similarity=0.096  Sum_probs=151.0

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCC
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIG   94 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G   94 (368)
                      ++.||||.|+..|+.++++.|++.+.+.  ...|.+|+||||+|+..|+        .++++.|++.+  ..++.+|..|
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadv--n~~d~~G~TpLh~Aa~~g~--------~eivk~Ll~~g--adin~~~~~g  127 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGMDD--SQFDDKGNTALYYAVDSGN--------MQTVKLFVKKN--WRLMFYGKTG  127 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCC--------HHHHHHHHHCC--CCcCccCCCC
Confidence            4789999999999999999999986554  3458899999999999999        99999999998  6678888888


Q ss_pred             C-cHHHHHHHcCCHHHHHHHHhhCCCCccccC-CCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchH-HHHHHH
Q 042244           95 Y-TALYQCAVKGNLRALKVLVKYNPDLTNKRD-TLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANM-LSRLID  171 (368)
Q Consensus        95 ~-tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~-Lh~a~~  171 (368)
                      + ||||+|+..|+.+++++|++++++.   .| ..|+||||+|+.+|+.++++.|++++++.+. +|..|.|| ||.|+.
T Consensus       128 ~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~-~d~~g~t~~L~~Aa~  203 (284)
T PHA02791        128 WKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAID  203 (284)
T ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCc-ccCCCCChHHHHHHH
Confidence            5 8999999999999999999987653   23 3589999999999999999999999998876 88899987 999999


Q ss_pred             hCchHHHHHHHHhCCcccccCCCCCCcHHHH
Q 042244          172 ATLYDVALDLLKLYPTIGRDNIDSRRIVLNA  202 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l  202 (368)
                      .|+.++++.|++.+ .+.+.+|.+| ||++.
T Consensus       204 ~~~~e~v~lLl~~G-a~in~~~~~~-~~l~~  232 (284)
T PHA02791        204 NKDLEMLQALFKYD-INIYSVNLEN-VLLDD  232 (284)
T ss_pred             cCCHHHHHHHHHCC-CCCccCcccC-ccCCC
Confidence            99999999999887 8889999855 77663

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.7e-27  Score=207.49  Aligned_cols=177  Identities=14%  Similarity=0.084  Sum_probs=155.1

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcC--CcccccCChHHHHHHHHhcCCchhhhch
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVEL--WVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g--~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ...+.||||.|++.|+.+.|+.|++.    . ...|..|.||||+|+..+  +        .++++.|++.+  .+++.+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~-n~~~~~g~TpLh~a~~~~~~~--------~eiv~~Ll~~g--advn~~   82 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----V-NDCNDLYETPIFSCLEKDKVN--------VEILKFLIENG--ADVNFK   82 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----h-hccCccCCCHHHHHHHcCCCC--------HHHHHHHHHCC--CCCCcc
Confidence            34578999999999999999999975    2 344889999999999865  7        99999999998  778888


Q ss_pred             h-cCCCcHHHHHHHc---CCHHHHHHHHhhCCCCccccCCCCCcHHHHHHh--hCCHHHHHHHHhhCCCCccccCCCCch
Q 042244           91 D-DIGYTALYQCAVK---GNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAY--HGHKDTFQYLREVTHGVDIYSGNDGAN  164 (368)
Q Consensus        91 d-~~G~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t  164 (368)
                      | ..|.||||+|+..   ++.+++++|++++.++ +.+|.+|+||||+|+.  .++.+++++|++.+.+.+. +|.+|+|
T Consensus        83 ~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~-~d~~g~t  160 (209)
T PHA02859         83 TRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNN  160 (209)
T ss_pred             CCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc-ccCCCCc
Confidence            7 4899999998864   4799999999998775 8899999999999876  4689999999999999886 9999999


Q ss_pred             HHHH-HHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          165 MLSR-LIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       165 ~Lh~-a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |||. +...++.++++.|++.+ .+.+.+|..|.||+|+|..+.
T Consensus       161 ~Lh~~a~~~~~~~iv~~Ll~~G-adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        161 ILYSYILFHSDKKIFDFLTSLG-IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhhh
Confidence            9996 56678999999999887 888999999999999987753

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.3e-27  Score=229.63  Aligned_cols=182  Identities=14%  Similarity=0.022  Sum_probs=136.3

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      .+..|.||||.|+..|+.++++.|++.+.+.  ...+.++.||||.|+..|+        .++++.|++.+ +...+..+
T Consensus        31 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~~~t~L~~A~~~g~--------~~~v~~Ll~~~-~~~~~~~~   99 (413)
T PHA02875         31 EIYDGISPIKLAMKFRDSEAIKLLMKHGAIP--DVKYPDIESELHDAVEEGD--------VKAVEELLDLG-KFADDVFY   99 (413)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--cccCCCcccHHHHHHHCCC--------HHHHHHHHHcC-Cccccccc
Confidence            3456888888888888888888888775432  2235677888888888888        88888888876 33344556


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      .+|+||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+..|+.+++++|++.+.+.+. +|..|+||||.|+.
T Consensus       100 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~TpL~~A~~  177 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI-EDCCGCTPLIIAMA  177 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHH
Confidence            67888888888888888888888887664 67777888888888888888888888888777665 77888888888888


Q ss_pred             hCchHHHHHHHHhCCcccccCCCCCC-cHHHHHhcCC
Q 042244          172 ATLYDVALDLLKLYPTIGRDNIDSRR-IVLNALAEKP  207 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~~~~~~~~~~~g~-Tpl~l~~~~~  207 (368)
                      .|+.++++.|++.+ ...+..+.+|. ||+|+|+++.
T Consensus       178 ~g~~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~~~  213 (413)
T PHA02875        178 KGDIAICKMLLDSG-ANIDYFGKNGCVAALCYAIENN  213 (413)
T ss_pred             cCCHHHHHHHHhCC-CCCCcCCCCCCchHHHHHHHcC
Confidence            88888888888776 66666666654 6777676653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.6e-27  Score=228.27  Aligned_cols=178  Identities=12%  Similarity=-0.064  Sum_probs=163.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCC
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGY   95 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~   95 (368)
                      .+++||.|++.|+.++++.|++.+.+.  ...+.+|.||||+|+..|+        .++++.|++.+  ..++.++.+|.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~--n~~~~~g~tpL~~A~~~~~--------~~~v~~Ll~~g--a~~~~~~~~~~   69 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINP--NFEIYDGISPIKLAMKFRD--------SEAIKLLMKHG--AIPDVKYPDIE   69 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCC--CccCCCCCCHHHHHHHcCC--------HHHHHHHHhCC--CCccccCCCcc
Confidence            468999999999999999999986554  2336789999999999999        99999999998  67788888999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCch
Q 042244           96 TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLY  175 (368)
Q Consensus        96 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~  175 (368)
                      ||||.|+..|+.++++.|++.++...+..+.+|+||||+|+..|+.+++++|++.+++... ++.+|.||||.|+..|+.
T Consensus        70 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~-~~~~g~tpLh~A~~~~~~  148 (413)
T PHA02875         70 SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI-PNTDKFSPLHLAVMMGDI  148 (413)
T ss_pred             cHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999998877667788999999999999999999999999999886 899999999999999999


Q ss_pred             HHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          176 DVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       176 ~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ++++.|++.+ ...+.+|..|.||||+|+...
T Consensus       149 ~~v~~Ll~~g-~~~~~~d~~g~TpL~~A~~~g  179 (413)
T PHA02875        149 KGIELLIDHK-ACLDIEDCCGCTPLIIAMAKG  179 (413)
T ss_pred             HHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcC
Confidence            9999999887 788899999999999998864

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.1e-27  Score=231.87  Aligned_cols=188  Identities=17%  Similarity=0.119  Sum_probs=161.8

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCccccc-----------------------
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVES-----------------------   68 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~-----------------------   68 (368)
                      .+..+.||||.|++.|+.++|+.|++.+.+.  ...|.+|+||||+||..|+.++++                       
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv--n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~  110 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNV--NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFN  110 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHH
Confidence            3557889999999999999999999987655  345889999999999998865541                       


Q ss_pred             CC---------------------------------hHHHHHHHHhcCCchhhhchhcC-CCcHHHHHHHcCCHHHHHHHH
Q 042244           69 DD---------------------------------ATCLLDKLASKVDPQTLEQRDDI-GYTALYQCAVKGNLRALKVLV  114 (368)
Q Consensus        69 ~~---------------------------------~~~~v~~Ll~~~~p~~~~~~d~~-G~tpLh~A~~~g~~~~v~~Ll  114 (368)
                      .+                                 ..++++.|++.+  .+++.+|.. |+||||+|+..|+.+++++|+
T Consensus       111 ~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~g--adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        111 NRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG--ADINMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             cCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcC--CCCCccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence            01                                 134777777777  667888888 999999999999999999999


Q ss_pred             hhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh-CchHHHHHHHHhCCcccccCC
Q 042244          115 KYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA-TLYDVALDLLKLYPTIGRDNI  193 (368)
Q Consensus       115 ~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~-~~~~~~~~Ll~~~~~~~~~~~  193 (368)
                      +.+.+. +.+|..|+||||.|+..|+.+++++|++.+++.+. +|..|+||||.|+.. ++.++++.|++.+ ...+.++
T Consensus       189 ~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~-~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g-advn~~~  265 (477)
T PHA02878        189 SYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA-RDKCGNTPLHISVGYCKDYDILKLLLEHG-VDVNAKS  265 (477)
T ss_pred             HCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHhcCCHHHHHHHHHcC-CCCCccC
Confidence            999775 88999999999999999999999999999999887 999999999999976 6899999999987 7777777


Q ss_pred             C-CCCcHHHHHhcC
Q 042244          194 D-SRRIVLNALAEK  206 (368)
Q Consensus       194 ~-~g~Tpl~l~~~~  206 (368)
                      . .|.||||+|..+
T Consensus       266 ~~~g~TpLh~A~~~  279 (477)
T PHA02878        266 YILGLTALHSSIKS  279 (477)
T ss_pred             CCCCCCHHHHHccC
Confidence            5 799999998543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=6.7e-27  Score=227.75  Aligned_cols=183  Identities=19%  Similarity=0.136  Sum_probs=160.4

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCC--------
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVD--------   83 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~--------   83 (368)
                      .+..|.||||.|++.|+.++++.|++.+.+.  ...+..|.||||.|+..|+        .++++.|++.+.        
T Consensus        31 ~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~--n~~~~~~~t~L~~A~~~~~--------~~iv~~Ll~~g~~~~~~~~~  100 (434)
T PHA02874         31 SVDETTTPLIDAIRSGDAKIVELFIKHGADI--NHINTKIPHPLLTAIKIGA--------HDIIKLLIDNGVDTSILPIP  100 (434)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCC--------HHHHHHHHHCCCCCCcchhc
Confidence            3456889999999999999999999987665  3447889999999999999        777777776541        


Q ss_pred             -------------chhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhh
Q 042244           84 -------------PQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV  150 (368)
Q Consensus        84 -------------p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~  150 (368)
                                   ..+++.+|..|.||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+.+|+.+++++|++.
T Consensus       101 ~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~  179 (434)
T PHA02874        101 CIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEK  179 (434)
T ss_pred             cCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHC
Confidence                         0345678889999999999999999999999998775 88999999999999999999999999999


Q ss_pred             CCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          151 THGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       151 ~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      +.+... .|.+|+||||.|+..|+.+++++|++.+ ...+.++.+|.||+|.|+...
T Consensus       180 g~~~n~-~~~~g~tpL~~A~~~g~~~iv~~Ll~~g-~~i~~~~~~g~TpL~~A~~~~  234 (434)
T PHA02874        180 GAYANV-KDNNGESPLHNAAEYGDYACIKLLIDHG-NHIMNKCKNGFTPLHNAIIHN  234 (434)
T ss_pred             CCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHHCC
Confidence            988876 8999999999999999999999999987 667788888999999987653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=9.3e-27  Score=226.74  Aligned_cols=180  Identities=16%  Similarity=0.101  Sum_probs=158.9

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ..+..|.||||.|+..|+.++++.|++.+++.  ...|..|.||||+|+..|+        .++++.|++.+  ..++.+
T Consensus       119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~--n~~d~~g~tpLh~A~~~~~--------~~iv~~Ll~~g--~~~n~~  186 (434)
T PHA02874        119 IKDAELKTFLHYAIKKGDLESIKMLFEYGADV--NIEDDNGCYPIHIAIKHNF--------FDIIKLLLEKG--AYANVK  186 (434)
T ss_pred             CCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC--CCcCCCCCCHHHHHHHCCc--------HHHHHHHHHCC--CCCCCC
Confidence            45678999999999999999999999987665  3458899999999999999        99999999998  778889


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      |..|+||||+|+..|+.+++++|++.+++. +.++..|+||||.|+..++ +.+++|+ .+.+.+. +|.+|+||||.|+
T Consensus       187 ~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~-~d~~G~TpLh~A~  262 (434)
T PHA02874        187 DNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR-SAIELLI-NNASIND-QDIDGSTPLHHAI  262 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCC-cCCCCCCHHHHHH
Confidence            999999999999999999999999998765 7888999999999999875 5666666 4566655 8999999999999


Q ss_pred             HhC-chHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          171 DAT-LYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       171 ~~~-~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ..+ +.++++.|++.+ .+.+.+|++|+||+|+|.+..
T Consensus       263 ~~~~~~~iv~~Ll~~g-ad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        263 NPPCDIDIIDILLYHK-ADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             hcCCcHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHhC
Confidence            876 789999999886 889999999999999998753

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=225.46  Aligned_cols=185  Identities=14%  Similarity=0.059  Sum_probs=153.8

Q ss_pred             chhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhh
Q 042244            9 EEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLE   88 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~   88 (368)
                      ....+..|.||||.|++.|+.++++.|++.+.+.  ...|.+|+||||+|+..++.      ..++++.|++++  +.++
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi--n~~d~~g~TpLh~A~~~~~~------~~e~v~lLl~~G--adin  134 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINNNRIVAMLLTHGADP--NACDKQHKTPLYYLSGTDDE------VIERINLLVQYG--AKIN  134 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC--CCCCCCCCCHHHHHHHcCCc------hHHHHHHHHHcC--CCcc
Confidence            3456678999999999999999999999986554  34488999999999876531      178899999988  5566


Q ss_pred             -chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhC--CHHHHHHHHhhCCCCccccCCCCchH
Q 042244           89 -QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHG--HKDTFQYLREVTHGVDIYSGNDGANM  165 (368)
Q Consensus        89 -~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~  165 (368)
                       ..|.+|.|||| |+..|+.++++.|++.+.+. +.+|..|+||||+|+..+  +.+++++|++.+.+.+. +|.+|+||
T Consensus       135 ~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~-~d~~G~Tp  211 (446)
T PHA02946        135 NSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK-PDHDGNTP  211 (446)
T ss_pred             cccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc-cCCCCCCH
Confidence             46889999998 66678999999999988655 889999999999988755  46899999999998886 89999999


Q ss_pred             HHHHHHhC--chHHHHHHHHhCCcccccCCCCCCcHHHHHhcCCC
Q 042244          166 LSRLIDAT--LYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPY  208 (368)
Q Consensus       166 Lh~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~~  208 (368)
                      ||+|+..+  +.++++.|+. + .+.+.+|++|+||||+|+++.+
T Consensus       212 LH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        212 LHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             HHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCC
Confidence            99999876  6788887774 3 8899999999999999988643

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=229.07  Aligned_cols=182  Identities=19%  Similarity=0.149  Sum_probs=129.7

Q ss_pred             hhhccCChHHHHHH--HhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcC--CcccccCChHHHHHHHHhcCCchh
Q 042244           11 DEYCARYWPLYRMI--EKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVEL--WVDVESDDATCLLDKLASKVDPQT   86 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~--~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g--~~~~~~~~~~~~v~~Ll~~~~p~~   86 (368)
                      ..+..|.||||.|+  ..|+.++++.|++.+.+.  ...+..|.||||+|+..|  +        .++++.|++.+  ..
T Consensus       101 ~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~--------~~iv~~Ll~~g--~d  168 (480)
T PHA03100        101 APDNNGITPLLYAISKKSNSYSIVEYLLDNGANV--NIKNSDGENLLHLYLESNKID--------LKILKLLIDKG--VD  168 (480)
T ss_pred             CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCCh--------HHHHHHHHHCC--CC
Confidence            34455667777777  777777777777665443  233666777777777777  6        77777777776  55


Q ss_pred             hhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCC------CcHHHHHHhhCC--HHHHHHHHhhCCCCcccc
Q 042244           87 LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLD------SLPVIQAAYHGH--KDTFQYLREVTHGVDIYS  158 (368)
Q Consensus        87 ~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G------~tpLh~Aa~~g~--~~~v~~Ll~~~~~~~~~~  158 (368)
                      ++.+|..|.||||+|+..|+.+++++|++++.+. +..+..|      .||||.|+..|+  .+++++|++.+.+.+. +
T Consensus       169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~-~  246 (480)
T PHA03100        169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINI-K  246 (480)
T ss_pred             cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCC-C
Confidence            6667777777777777777777777777776554 5566666      677777777777  7777777777776665 7


Q ss_pred             CCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          159 GNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       159 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |..|+||||.|+..++.++++.|++.+ .+.+.+|.+|.||+|+|.++.
T Consensus       247 d~~g~TpL~~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        247 DVYGFTPLHYAVYNNNPEFVKYLLDLG-ANPNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhC
Confidence            777888888888888888888777776 577777888888888776643

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=4.3e-27  Score=228.05  Aligned_cols=195  Identities=15%  Similarity=0.087  Sum_probs=152.7

Q ss_pred             CCCCccchhhhccCChHHHHHHHhCCHHHHHHHHHcCCcc----cccccCCCCCcHHHHHHHcCCcccccCChHHHHHHH
Q 042244            3 INSDDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDA----LTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKL   78 (368)
Q Consensus         3 i~~~~~~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~----~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~L   78 (368)
                      |+.+-...+.+..|++|+|+|+++|..|+.+..+.++|..    + .-.|.+|.||||.|+..|+        +++++.+
T Consensus       174 i~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~--------~e~lk~~  244 (929)
T KOG0510|consen  174 INKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGD--------IEMLKMC  244 (929)
T ss_pred             HhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCC--------HHHHHHH
Confidence            4445455556666777777777777777777776633211    1 2236677777777777777        9999999


Q ss_pred             HhcCCc-------------hhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHH
Q 042244           79 ASKVDP-------------QTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQ  145 (368)
Q Consensus        79 l~~~~p-------------~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~  145 (368)
                      |+.++.             +.++..|.+|.||||+|++.|+.+.++.|+..+.+. +.+++++.||||.||.+|+.+.++
T Consensus       245 L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~  323 (929)
T KOG0510|consen  245 LQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVE  323 (929)
T ss_pred             HhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHH
Confidence            998731             235677999999999999999999999999999765 899999999999999999999999


Q ss_pred             HHHhh-CCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccc--cCCCCCCcHHHHHhcCC
Q 042244          146 YLREV-THGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGR--DNIDSRRIVLNALAEKP  207 (368)
Q Consensus       146 ~Ll~~-~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~Tpl~l~~~~~  207 (368)
                      -|++. +.......|..|.||||+|+++|+.++++.|++++....+  ..|.+|+||||+|+...
T Consensus       324 rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g  388 (929)
T KOG0510|consen  324 RLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYG  388 (929)
T ss_pred             HHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhc
Confidence            99982 2222225888999999999999999999999999854444  45999999999998864

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=3.4e-27  Score=228.75  Aligned_cols=179  Identities=15%  Similarity=0.092  Sum_probs=162.8

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcc--------------cccccCCCCCcHHHHHHHcCCcccccCChHHHHHH
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDA--------------LTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDK   77 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~--------------~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~   77 (368)
                      .+..|.||||.|+..||.|.++.+|+.....              + ...|.+|.||||+||+.|+        .++++.
T Consensus       221 ~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv-~~~d~dg~tpLH~a~r~G~--------~~svd~  291 (929)
T KOG0510|consen  221 DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELV-NDEDNDGCTPLHYAARQGG--------PESVDN  291 (929)
T ss_pred             ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHh-hcccccCCchHHHHHHcCC--------hhHHHH
Confidence            3567899999999999999999999873211              2 2348899999999999999        999999


Q ss_pred             HHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHh-hCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc
Q 042244           78 LASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVK-YNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI  156 (368)
Q Consensus        78 Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~  156 (368)
                      |+..+  .+++.++.++.||||.||++|+.++|+.|++ .+..+.+..|-.|+||||+|++.||.++++.|++.|+....
T Consensus       292 Ll~~G--a~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~  369 (929)
T KOG0510|consen  292 LLGFG--ASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLN  369 (929)
T ss_pred             HHHcC--CcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhc
Confidence            99999  8999999999999999999999999999999 67778899999999999999999999999999999987653


Q ss_pred             --ccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHH
Q 042244          157 --YSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNA  202 (368)
Q Consensus       157 --~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l  202 (368)
                        ..|.+|+||||.|++.|+..++++|+..+ +.+..+|++|.+++|.
T Consensus       370 ~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~G-a~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  370 MSEADSDGNTALHLAAKYGNTSAVQKLISHG-ADIGVKNKKGKSAFDT  416 (929)
T ss_pred             ccccccCCchhhhHHHHhccHHHHHHHHHcC-Cceeeccccccccccc
Confidence              35999999999999999999999999997 8999999999999984

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.6e-26  Score=226.15  Aligned_cols=145  Identities=14%  Similarity=0.028  Sum_probs=132.2

Q ss_pred             CCC-CCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           48 IAP-GSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        48 ~~~-g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      +.. |.||||+|+..|+        .++++.|++.+  .+++.+|..|+||||+|+..|+.++++.|++.+.+. +.+|.
T Consensus       164 ~~~~g~tpLh~A~~~~~--------~~iv~~Ll~~g--ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~  232 (477)
T PHA02878        164 DRHKGNTALHYATENKD--------QRLTELLLSYG--ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDK  232 (477)
T ss_pred             CCCCCCCHHHHHHhCCC--------HHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCC
Confidence            445 9999999999999        99999999998  778999999999999999999999999999998775 88999


Q ss_pred             CCCcHHHHHHhh-CCHHHHHHHHhhCCCCccccC-CCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHh
Q 042244          127 LDSLPVIQAAYH-GHKDTFQYLREVTHGVDIYSG-NDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALA  204 (368)
Q Consensus       127 ~G~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~  204 (368)
                      .|+||||+|+.+ ++.+++++|++++.+.+. ++ ..|.||||.|  .++.++++.|++.+ .+.+.+|.+|+||+|+|+
T Consensus       233 ~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~-~~~~~g~TpLh~A--~~~~~~v~~Ll~~g-adin~~d~~g~TpL~~A~  308 (477)
T PHA02878        233 CGNTPLHISVGYCKDYDILKLLLEHGVDVNA-KSYILGLTALHSS--IKSERKLKLLLEYG-ADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             CCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc-cCCCCCCCHHHHH--ccCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHH
Confidence            999999999976 689999999999999876 55 4899999999  46788999999887 899999999999999998


Q ss_pred             cCC
Q 042244          205 EKP  207 (368)
Q Consensus       205 ~~~  207 (368)
                      ++.
T Consensus       309 ~~~  311 (477)
T PHA02878        309 KQY  311 (477)
T ss_pred             HHc
Confidence            743

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=1.3e-26  Score=220.64  Aligned_cols=179  Identities=16%  Similarity=0.159  Sum_probs=161.2

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh-cCC
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD-DIG   94 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d-~~G   94 (368)
                      -.+..+.|++.|+.+.|+.+++.....+ ...|++|.|+||+||.+++        .+++|+|++++  ++++..+ .-|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNr--------l~v~r~li~~g--advn~~gG~l~  112 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNR--------LDVARYLISHG--ADVNAIGGVLG  112 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCc--------HHHHHHHHHcC--CCccccCCCCC
Confidence            3567899999999999999999854444 5669999999999999999        99999999999  8888888 668


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCc
Q 042244           95 YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATL  174 (368)
Q Consensus        95 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~  174 (368)
                      .||||+|+++|+..++++|+++|.+. +.+|.+|.+|+|+|++.|+.-.+-|++.++.+.+. +|.+|+||||+|+.+|+
T Consensus       113 stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~-~D~~grTpLmwAaykg~  190 (600)
T KOG0509|consen  113 STPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL-RDNNGRTPLMWAAYKGF  190 (600)
T ss_pred             CCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC-cCCCCCCHHHHHHHhcc
Confidence            89999999999999999999999876 99999999999999999999999999999998887 99999999999999999


Q ss_pred             hHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          175 YDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       175 ~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ...++.|++-+.......|++|+||||.++...
T Consensus       191 ~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~g  223 (600)
T KOG0509|consen  191 ALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGG  223 (600)
T ss_pred             cHHHHHHHHhcccccccccccCCchHHHHHhcC
Confidence            887888888874444445589999999987754

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=221.99  Aligned_cols=164  Identities=15%  Similarity=0.113  Sum_probs=82.9

Q ss_pred             ccchhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHH-----HHHcCCcccccCChHHHHHHHHhc
Q 042244            7 DQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFH-----AIVELWVDVESDDATCLLDKLASK   81 (368)
Q Consensus         7 ~~~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~-----A~~~g~~~~~~~~~~~~v~~Ll~~   81 (368)
                      +.....+..+.||||.|++.|+.++++.|++.+.+.  ...+..|.||||+     |+..|+        .++++.|++.
T Consensus        26 ~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~--~~~~~~~~t~L~~~~~~~a~~~~~--------~~iv~~Ll~~   95 (480)
T PHA03100         26 DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADI--NSSTKNNSTPLHYLSNIKYNLTDV--------KEIVKLLLEY   95 (480)
T ss_pred             ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCC--CCccccCcCHHHHHHHHHHHhhch--------HHHHHHHHHC
Confidence            333344555556666666666666666666554332  2224445555555     555555        5555555555


Q ss_pred             CCchhhhchhcCCCcHHHHHH--HcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhC--CHHHHHHHHhhCCCCccc
Q 042244           82 VDPQTLEQRDDIGYTALYQCA--VKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHG--HKDTFQYLREVTHGVDIY  157 (368)
Q Consensus        82 ~~p~~~~~~d~~G~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~  157 (368)
                      +  ..++..|..|.||||+|+  ..|+.+++++|++++.+. +..|..|.||||+|+..|  +.+++++|++.+.+.+. 
T Consensus        96 g--a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~-  171 (480)
T PHA03100         96 G--ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINA-  171 (480)
T ss_pred             C--CCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccc-
Confidence            4  333444555555555555  555555555555544332 444445555555555555  45555555555444443 


Q ss_pred             cCCCCchHHHHHHHhCchHHHHHHHHh
Q 042244          158 SGNDGANMLSRLIDATLYDVALDLLKL  184 (368)
Q Consensus       158 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~  184 (368)
                      +|.+|.||||.|+..|+.++++.|++.
T Consensus       172 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~  198 (480)
T PHA03100        172 KNRYGYTPLHIAVEKGNIDVIKFLLDN  198 (480)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            444455555555555544444444444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.93  E-value=2e-25  Score=224.34  Aligned_cols=177  Identities=13%  Similarity=0.042  Sum_probs=153.2

Q ss_pred             hccCChHHHHHHH--hCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           13 YCARYWPLYRMIE--KNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        13 ~~~g~t~Lh~A~~--~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      +..|.||||.|+.  .|+.++++.|++.+.+.  ...|.+|.||||+|+..|+.+      .++++.|++.+  ++++.+
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV--N~kD~~G~TPLH~Aa~~g~~~------~eIVklLLe~G--ADVN~k  243 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNV--NLQNNHLITPLHTYLITGNVC------ASVIKKIIELG--GDMDMK  243 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCCC------HHHHHHHHHcC--CCCCCC
Confidence            6679999999865  46899999999987665  345889999999999999611      59999999998  889999


Q ss_pred             hcCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhhCCCCccccCCCCCcHHH
Q 042244           91 DDIGYTALYQC-------------------------------------AVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI  133 (368)
Q Consensus        91 d~~G~tpLh~A-------------------------------------~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh  133 (368)
                      |..|+||||.|                                     ++.|+.++++.|++.++++ +.+|.+|+||||
T Consensus       244 D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH  322 (764)
T PHA02716        244 CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLH  322 (764)
T ss_pred             CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHH
Confidence            99999999975                                     4457888999999998775 889999999999


Q ss_pred             HHHh--hCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH--------------hCchHHHHHHHHhCCcccccCCCCCC
Q 042244          134 QAAY--HGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID--------------ATLYDVALDLLKLYPTIGRDNIDSRR  197 (368)
Q Consensus       134 ~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~g~  197 (368)
                      +|+.  +++.+++++|++.+.+.+. +|..|+||||.|+.              .++.++++.|++.+ .+.+.+|..|+
T Consensus       323 ~Aaa~~~~~~eIVklLLe~GADIN~-kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G-ADIn~kn~~G~  400 (764)
T PHA02716        323 QYILRHNISTDIIKLLHEYGNDLNE-PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG-ADITAVNCLGY  400 (764)
T ss_pred             HHHHHhCCCchHHHHHHHcCCCCcc-CCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC-CCCCCcCCCCC
Confidence            9864  4588999999999998886 99999999999865              36789999999987 89999999999


Q ss_pred             cHHHH
Q 042244          198 IVLNA  202 (368)
Q Consensus       198 Tpl~l  202 (368)
                      ||||.
T Consensus       401 TPLh~  405 (764)
T PHA02716        401 TPLTS  405 (764)
T ss_pred             ChHHH
Confidence            99994

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=6e-25  Score=213.49  Aligned_cols=177  Identities=17%  Similarity=0.151  Sum_probs=155.1

Q ss_pred             CChHHHHHH--HhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcC
Q 042244           16 RYWPLYRMI--EKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDI   93 (368)
Q Consensus        16 g~t~Lh~A~--~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~   93 (368)
                      ++++||.++  ..++.++++.|++.+.+.  ...|.+|.||||+||..|+        .++++.|++++  ++++.+|.+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadv--n~~d~~G~TpLh~Aa~~g~--------~eiv~lLL~~G--Adin~~d~~  104 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSP--NETDDDGNYPLHIASKINN--------NRIVAMLLTHG--ADPNACDKQ  104 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCC--CccCCCCCCHHHHHHHcCC--------HHHHHHHHHCc--CCCCCCCCC
Confidence            478999876  455789999999987665  4458999999999999999        99999999998  788999999


Q ss_pred             CCcHHHHHHHcCC--HHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           94 GYTALYQCAVKGN--LRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        94 G~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      |+||||+|+..++  .+++++|++++.++-...|.+|.|||| |+..++.+++++|++.+.+... +|+.|+||||.|+.
T Consensus       105 g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~-~d~~G~t~Lh~A~~  182 (446)
T PHA02946        105 HKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARI-VDKFGKNHIHRHLM  182 (446)
T ss_pred             CCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccc-cCCCCCCHHHHHHH
Confidence            9999999987664  899999999998774457999999998 6677999999999999998886 99999999999887


Q ss_pred             hCc--hHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          172 ATL--YDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       172 ~~~--~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      .++  .++++.|++.+ .+.+.+|.+|+||||+|+++.
T Consensus       183 ~~~~~~~~v~~Ll~~G-adin~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        183 SDNPKASTISWMMKLG-ISPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             hcCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcC
Confidence            665  58899999886 899999999999999999753

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.4e-25  Score=216.13  Aligned_cols=183  Identities=12%  Similarity=0.060  Sum_probs=148.9

Q ss_pred             hhhhccCChHHHHHHHhC---CHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcC-CcccccCChHHHHHHHHhcCCch
Q 042244           10 EDEYCARYWPLYRMIEKN---DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVEL-WVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G---~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g-~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      ...+..|.||||.|+..|   +.++++.|++.+.+.  ...+..|.||||+|+..| +        .++++.|++.+  .
T Consensus        41 n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi--n~~~~~g~TpLh~A~~~~~~--------~~iv~lLl~~g--a  108 (471)
T PHA03095         41 NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV--NAPERCGFTPLHLYLYNATT--------LDVIKLLIKAG--A  108 (471)
T ss_pred             ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCc--------HHHHHHHHHcC--C
Confidence            345667899999999988   899999999887665  344778999999999999 7        88999999988  7


Q ss_pred             hhhchhcCCCcHHHHHH--HcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhC--CHHHHHHHHhhCCCCccccCCC
Q 042244           86 TLEQRDDIGYTALYQCA--VKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHG--HKDTFQYLREVTHGVDIYSGND  161 (368)
Q Consensus        86 ~~~~~d~~G~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~  161 (368)
                      .++.+|..|+||||+|+  ..++.+++++|++.+.++ +..|..|.||||+|+..+  +.+++++|++.+.+... .|..
T Consensus       109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~-~d~~  186 (471)
T PHA03095        109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDR  186 (471)
T ss_pred             CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc-cCCC
Confidence            78888889999999998  456788999999988765 788888999999888766  57888888888887776 5888


Q ss_pred             CchHHHHHHHh--CchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          162 GANMLSRLIDA--TLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       162 g~t~Lh~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |+||||.++..  ++.++++.|++.+ ...+.+|.+|+||||+|+...
T Consensus       187 g~t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        187 FRSLLHHHLQSFKPRARIVRELIRAG-CDPAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             CCCHHHHHHHHCCCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence            88888887764  5667777777776 777888888888888887654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=5.4e-25  Score=216.63  Aligned_cols=183  Identities=13%  Similarity=0.072  Sum_probs=116.2

Q ss_pred             hhhhccCChHHHHHHHhC-CHHHHHHHHHcCCcccccccCCCCCcHHHHHH--HcCCcccccCChHHHHHHHHhcCCchh
Q 042244           10 EDEYCARYWPLYRMIEKN-DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAI--VELWVDVESDDATCLLDKLASKVDPQT   86 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G-~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~--~~g~~~~~~~~~~~~v~~Ll~~~~p~~   86 (368)
                      +..+..|.||||.|+..| +.++++.|++.+.+.  ...|..|.||||+|+  ..++        .++++.|++.+  .+
T Consensus        77 n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i--n~~~~~g~tpLh~a~~~~~~~--------~~iv~~Ll~~g--ad  144 (471)
T PHA03095         77 NAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV--NAKDKVGRTPLHVYLSGFNIN--------PKVIRLLLRKG--AD  144 (471)
T ss_pred             CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC--CCCCCCCCCHHHHHhhCCcCC--------HHHHHHHHHcC--CC
Confidence            334458999999999999 588889998886654  345788999999998  4456        56666666665  44


Q ss_pred             hhchhcCCCcHHHHHHHcC--CHHHHHHHHhhCCCC----------------------------------ccccCCCCCc
Q 042244           87 LEQRDDIGYTALYQCAVKG--NLRALKVLVKYNPDL----------------------------------TNKRDTLDSL  130 (368)
Q Consensus        87 ~~~~d~~G~tpLh~A~~~g--~~~~v~~Ll~~~~~~----------------------------------~~~~d~~G~t  130 (368)
                      ++.+|..|.||||+|+..+  +.+++++|++.+.+.                                  .+.+|..|+|
T Consensus       145 ~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~t  224 (471)
T PHA03095        145 VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNT  224 (471)
T ss_pred             CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCC
Confidence            5555555556655555443  345555555554433                                  1445555555


Q ss_pred             HHHHHHhhCCH--HHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          131 PVIQAAYHGHK--DTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       131 pLh~Aa~~g~~--~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      |||+|+..|+.  .+++.+++.+.+.+. +|.+|+||||+|+..|+.++++.|++.+ ++.+.+|.+|+||+|+|+++
T Consensus       225 pLh~Aa~~~~~~~~~v~~ll~~g~din~-~d~~g~TpLh~A~~~~~~~~v~~LL~~g-ad~n~~~~~g~tpl~~A~~~  300 (471)
T PHA03095        225 PLHSMATGSSCKRSLVLPLLIAGISINA-RNRYGQTPLHYAAVFNNPRACRRLIALG-ADINAVSSDGNTPLSLMVRN  300 (471)
T ss_pred             HHHHHHhcCCchHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHh
Confidence            55555555542  345555555555554 6666666666666666666666666664 66666666666777666554

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=7.2e-25  Score=216.48  Aligned_cols=188  Identities=13%  Similarity=0.060  Sum_probs=157.6

Q ss_pred             chhhhccCChHHHHHHHh-----CCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCC
Q 042244            9 EEDEYCARYWPLYRMIEK-----NDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVD   83 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~-----G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~   83 (368)
                      ....+..|.||||.|+..     ++.++++.|++.+.+.  ...|.+|+||||+|+..+..     ++.++++.|++++ 
T Consensus        64 vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi--N~~d~~G~TpLh~a~~~~~~-----~~~~iv~~Ll~~G-  135 (489)
T PHA02798         64 VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI--NKKNSDGETPLYCLLSNGYI-----NNLEILLFMIENG-  135 (489)
T ss_pred             CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC--CCCCCCcCcHHHHHHHcCCc-----ChHHHHHHHHHcC-
Confidence            334567899999998864     7789999999987765  44588999999999998630     1189999999998 


Q ss_pred             chhhhchhcCCCcHHHHHHHcCC---HHHHHHHHhhCCCCcccc-CCCCCcHHHHHHhhC----CHHHHHHHHhhCCCCc
Q 042244           84 PQTLEQRDDIGYTALYQCAVKGN---LRALKVLVKYNPDLTNKR-DTLDSLPVIQAAYHG----HKDTFQYLREVTHGVD  155 (368)
Q Consensus        84 p~~~~~~d~~G~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~-d~~G~tpLh~Aa~~g----~~~~v~~Ll~~~~~~~  155 (368)
                       ++++.+|.+|.||||+|++.|+   .+++++|++++.++ +.+ +..|.||||.++.++    +.+++++|++.|.+..
T Consensus       136 -advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~  213 (489)
T PHA02798        136 -ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN  213 (489)
T ss_pred             -CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc
Confidence             7889999999999999999988   99999999998776 555 557899999987653    7889999988775322


Q ss_pred             c--------------------------------------ccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCC
Q 042244          156 I--------------------------------------YSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRR  197 (368)
Q Consensus       156 ~--------------------------------------~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  197 (368)
                      .                                      .+|..|+||||.|+..++.+++++|++.+ ++.+.+|..|+
T Consensus       214 ~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G-Adin~~d~~G~  292 (489)
T PHA02798        214 KENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLG-GDINIITELGN  292 (489)
T ss_pred             cCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC-CcccccCCCCC
Confidence            1                                      26778999999999999999999999987 89999999999


Q ss_pred             cHHHHHhcCC
Q 042244          198 IVLNALAEKP  207 (368)
Q Consensus       198 Tpl~l~~~~~  207 (368)
                      ||+|+|+++.
T Consensus       293 TpL~~A~~~~  302 (489)
T PHA02798        293 TCLFTAFENE  302 (489)
T ss_pred             cHHHHHHHcC
Confidence            9999998864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.93  E-value=7.8e-25  Score=220.08  Aligned_cols=154  Identities=16%  Similarity=0.143  Sum_probs=104.2

Q ss_pred             cchhhhccCChHHHHHHHhCC--HHHHHHHHHcCCcccccccCCCCCcHHHHHHH---cCCcccc---------------
Q 042244            8 QEEDEYCARYWPLYRMIEKND--WRGVEDFVTNDPDALTAKTIAPGSMTIFHAIV---ELWVDVE---------------   67 (368)
Q Consensus         8 ~~~~~~~~g~t~Lh~A~~~G~--~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~---~g~~~~~---------------   67 (368)
                      ..+..+..|.||||.|++.|+  .++++.|++.+.+.  ...|..|+||||.|+.   .++.+++               
T Consensus       204 DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV--N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~  281 (764)
T PHA02716        204 NVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM--DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNI  281 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccc
Confidence            344556789999999999995  58999999987664  3458899999998753   1121111               


Q ss_pred             -----------cCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHH--cCCHHHHHHHHhhCCCCccccCCCCCcHHHH
Q 042244           68 -----------SDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAV--KGNLRALKVLVKYNPDLTNKRDTLDSLPVIQ  134 (368)
Q Consensus        68 -----------~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~  134 (368)
                                 +.|+.++++.|++.+  ..++.+|..|+||||+|+.  .++.+++++|++.+.++ +.+|..|+||||+
T Consensus       282 ~~~L~~~i~AA~~g~leiVklLLe~G--AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~  358 (764)
T PHA02716        282 PMILHSYITLARNIDISVVYSFLQPG--VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHT  358 (764)
T ss_pred             hhhhHHHHHHHHcCCHHHHHHHHhCC--CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHH
Confidence                       112367777777776  5567777777777777653  34667777777776554 6677777777777


Q ss_pred             HHh--------------hCCHHHHHHHHhhCCCCccccCCCCchHHH
Q 042244          135 AAY--------------HGHKDTFQYLREVTHGVDIYSGNDGANMLS  167 (368)
Q Consensus       135 Aa~--------------~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  167 (368)
                      |+.              .++.+++++|++.+++... +|..|+||||
T Consensus       359 A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~-kn~~G~TPLh  404 (764)
T PHA02716        359 YLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA-VNCLGYTPLT  404 (764)
T ss_pred             HHHhhhhhccccccccccChHHHHHHHHHCCCCCCC-cCCCCCChHH
Confidence            654              2456677777766666554 5555556655

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.3e-24  Score=220.08  Aligned_cols=182  Identities=14%  Similarity=0.066  Sum_probs=119.4

Q ss_pred             hhhccCChHHHHHHHhCCHH-HHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           11 DEYCARYWPLYRMIEKNDWR-GVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~-~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      ..+..|.||||.|+..|+.+ +++.|++.+.+.  ...|.+|+||||+|+..|+.       .++++.|++.+  ..++.
T Consensus       268 ~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi--n~~d~~g~TpLh~Aa~~g~~-------~~~v~~Ll~~g--adin~  336 (682)
T PHA02876        268 SIDDCKNTPLHHASQAPSLSRLVPKLLERGADV--NAKNIKGETPLYLMAKNGYD-------TENIRTLIMLG--ADVNA  336 (682)
T ss_pred             CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHhCCC-------HHHHHHHHHcC--CCCCC
Confidence            34556888888888888864 666666665443  34477888888888888831       66677776666  55666


Q ss_pred             hhcCCCcHHHHHHHc-CCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHH
Q 042244           90 RDDIGYTALYQCAVK-GNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSR  168 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  168 (368)
                      +|..|.||||+|+.. ++.++++.|++.+.+. +.+|..|+||||+|+..|+.+++++|++.+++... .+.+|.||||.
T Consensus       337 ~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~-~~~~g~T~Lh~  414 (682)
T PHA02876        337 ADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA-LSQKIGTALHF  414 (682)
T ss_pred             cccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccc-cCCCCCchHHH
Confidence            666777777777654 3466666666666543 66666777777777777777777777766666654 66666666666


Q ss_pred             HHHhCch-HHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          169 LIDATLY-DVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       169 a~~~~~~-~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      |+..++. ++++.|++.+ ...+.+|.+|+||||+|+++
T Consensus       415 A~~~~~~~~~vk~Ll~~g-adin~~d~~G~TpLh~Aa~~  452 (682)
T PHA02876        415 ALCGTNPYMSVKTLIDRG-ANVNSKNKDLSTPLHYACKK  452 (682)
T ss_pred             HHHcCCHHHHHHHHHhCC-CCCCcCCCCCChHHHHHHHh
Confidence            6654443 3455555554 56666666666666666653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.92  E-value=6.6e-24  Score=209.88  Aligned_cols=180  Identities=17%  Similarity=0.100  Sum_probs=136.8

Q ss_pred             cCChHHHHHHHhC------CHHHHHHHHHcCCcccccccCCCCCcHHHHHHHc---CCcccccCChHHHHHHHHhcCCch
Q 042244           15 ARYWPLYRMIEKN------DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVE---LWVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus        15 ~g~t~Lh~A~~~G------~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~---g~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      .+.||||.|+..+      +.++++.|++.+.+.  ...|.+|.||||.|+..   |+        .++++.|++++  +
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi--n~~d~~g~tpL~~a~~~~~~~~--------~eiv~~Ll~~G--a  135 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI--NLKTFNGVSPIVCFIYNSNINN--------CDMLRFLLSKG--I  135 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC--CCCCCCCCcHHHHHHHhcccCc--------HHHHHHHHHCC--C
Confidence            3567887776654      356777777776554  33477788888877655   45        78888888887  6


Q ss_pred             hh-hchhcCCCcHHHHHHHc--CCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhC----CHHHHHHHHhhCCCCcc--
Q 042244           86 TL-EQRDDIGYTALYQCAVK--GNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHG----HKDTFQYLREVTHGVDI--  156 (368)
Q Consensus        86 ~~-~~~d~~G~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g----~~~~v~~Ll~~~~~~~~--  156 (368)
                      ++ +.+|..|+||||+|+..  ++.+++++|++++.+.....+..|.||||+|++++    +.+++++|++.|.+.+.  
T Consensus       136 din~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        136 NVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             CcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence            77 77888888888888654  57888888888887763336778888888887654    78888888888765321  


Q ss_pred             -----------------------------------ccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHH
Q 042244          157 -----------------------------------YSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLN  201 (368)
Q Consensus       157 -----------------------------------~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~  201 (368)
                                                         .+|.+|+||||.|+..++.++++.|++.+ ++.+.+|.+|+||||
T Consensus       216 ~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~TpL~  294 (494)
T PHA02989        216 NGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGDTVLT  294 (494)
T ss_pred             CccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCCCHHH
Confidence                                               24667899999999999999999999886 788888999999999


Q ss_pred             HHhcCC
Q 042244          202 ALAEKP  207 (368)
Q Consensus       202 l~~~~~  207 (368)
                      +|+++.
T Consensus       295 ~A~~~~  300 (494)
T PHA02989        295 YAIKHG  300 (494)
T ss_pred             HHHHcC
Confidence            987764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=7.7e-24  Score=217.34  Aligned_cols=183  Identities=15%  Similarity=0.042  Sum_probs=157.8

Q ss_pred             hhhccCChHHHHHHHhC-CHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           11 DEYCARYWPLYRMIEKN-DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G-~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      ..+..|.||||.|+..| +.+.++.|++.+.+.  ...|..|.||||+|+..++.       .++++.|++.+  ..++.
T Consensus       302 ~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi--n~~d~~g~TpLh~A~~~~~~-------~~iv~lLl~~g--adin~  370 (682)
T PHA02876        302 AKNIKGETPLYLMAKNGYDTENIRTLIMLGADV--NAADRLYITPLHQASTLDRN-------KDIVITLLELG--ANVNA  370 (682)
T ss_pred             CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC--CCcccCCCcHHHHHHHhCCc-------HHHHHHHHHcC--CCCcc
Confidence            45678999999999999 589999998876554  34588999999999986531       88899999887  88899


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCC-HHHHHHHHhhCCCCccccCCCCchHHHH
Q 042244           90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGH-KDTFQYLREVTHGVDIYSGNDGANMLSR  168 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~-~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  168 (368)
                      +|..|+||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..++ .++++.|++.+.+.+. +|.+|+||||.
T Consensus       371 ~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~-~d~~G~TpLh~  448 (682)
T PHA02876        371 RDYCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS-KNKDLSTPLHY  448 (682)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCc-CCCCCChHHHH
Confidence            9999999999999999999999999998775 7888899999999987765 5678999999998886 99999999999


Q ss_pred             HHHhC-chHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          169 LIDAT-LYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       169 a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |+..+ +.++++.|++.+ .+.+.+|.+|.||+++++...
T Consensus       449 Aa~~~~~~~iv~lLl~~G-ad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        449 ACKKNCKLDVIEMLLDNG-ADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             HHHhCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhC
Confidence            99876 679999999886 889999999999999988754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=8.5e-24  Score=220.30  Aligned_cols=176  Identities=13%  Similarity=0.036  Sum_probs=157.7

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      +..+.++||.||..|+.+.++.|++.+.+.  ...|.+|+||||+||..|+        .++++.|++++  .+++.+|.
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~--n~~d~~G~TpLh~Aa~~g~--------~~~v~~Ll~~g--adin~~d~  589 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP--DIGDSKGRTPLHIAASKGY--------EDCVLVLLKHA--CNVHIRDA  589 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCh--------HHHHHHHHhcC--CCCCCcCC
Confidence            335679999999999999999999986554  3458999999999999999        99999999998  78899999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      +|+||||+|+..|+.+++++|++.+..   ..+..|.+|||.|+.+|+.++++.|++.+.+.+. +|.+|+||||.|+..
T Consensus       590 ~G~TpL~~A~~~g~~~iv~~L~~~~~~---~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~-~d~~G~TpLh~A~~~  665 (823)
T PLN03192        590 NGNTALWNAISAKHHKIFRILYHFASI---SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS-EDHQGATALQVAMAE  665 (823)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhcCcc---cCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHC
Confidence            999999999999999999999987543   2345678999999999999999999999999887 999999999999999


Q ss_pred             CchHHHHHHHHhCCcccccCCCCC-CcHHHHHhc
Q 042244          173 TLYDVALDLLKLYPTIGRDNIDSR-RIVLNALAE  205 (368)
Q Consensus       173 ~~~~~~~~Ll~~~~~~~~~~~~~g-~Tpl~l~~~  205 (368)
                      |+.++++.|++.+ .+.+.+|.+| .||.+++..
T Consensus       666 g~~~iv~~Ll~~G-Adv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        666 DHVDMVRLLIMNG-ADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             CcHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHH
Confidence            9999999999887 8888889888 999988643

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=1.7e-24  Score=198.63  Aligned_cols=183  Identities=20%  Similarity=0.153  Sum_probs=161.1

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHc---CCccc----ccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCC
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTN---DPDAL----TAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVD   83 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~---~p~~~----~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~   83 (368)
                      ....+|-|||-.|+++||.++|++|+++   +|+..    ..--+.+|.+||-.|+..||        .++||.|++++ 
T Consensus        37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGH--------l~vVk~L~~~g-  107 (615)
T KOG0508|consen   37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGH--------LEVVKLLLRRG-  107 (615)
T ss_pred             ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCc--------HHHHHHHHHhc-
Confidence            3466788999999999999999999996   34331    01124478899999999999        99999999998 


Q ss_pred             chhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCc
Q 042244           84 PQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGA  163 (368)
Q Consensus        84 p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~  163 (368)
                       +.++.......|||--||.-|+.+++|+|++++.+. +..|..|.|.||+||.+||.+++++|++.+++.+. ++..|+
T Consensus       108 -a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~-ks~kGN  184 (615)
T KOG0508|consen  108 -ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA-KSYKGN  184 (615)
T ss_pred             -CccccccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCCcch-hcccCc
Confidence             888888888899999999999999999999998776 89999999999999999999999999999999987 999999


Q ss_pred             hHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          164 NMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       164 t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |+||.|++.|+.++++.|++.+ . .-.+|..|.|||-.|+...
T Consensus       185 TALH~caEsG~vdivq~Ll~~g-a-~i~~d~~GmtPL~~Aa~tG  226 (615)
T KOG0508|consen  185 TALHDCAESGSVDIVQLLLKHG-A-KIDVDGHGMTPLLLAAVTG  226 (615)
T ss_pred             hHHHhhhhcccHHHHHHHHhCC-c-eeeecCCCCchHHHHhhhc
Confidence            9999999999999999999886 2 3345777999999987753

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.2e-23  Score=207.04  Aligned_cols=168  Identities=9%  Similarity=-0.004  Sum_probs=100.9

Q ss_pred             chhhhccCChHHHHHHHh---CCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccc------------------
Q 042244            9 EEDEYCARYWPLYRMIEK---NDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVE------------------   67 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~---G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~------------------   67 (368)
                      ....+.+|.||||.|+..   |+.++++.|++.+.+..  ..+..|.||||.|+..|+.+++                  
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~--~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~  102 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPL--HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND  102 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcc--ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC
Confidence            344577899999997555   88999999999866553  3488999999999999985543                  


Q ss_pred             ---------cCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHH--HcCCHHHHHHHHhhCCCCccccC---CCC-----
Q 042244           68 ---------SDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCA--VKGNLRALKVLVKYNPDLTNKRD---TLD-----  128 (368)
Q Consensus        68 ---------~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~d---~~G-----  128 (368)
                               ..++.++++.|++.+  .+++.+|.+|+||||.|+  ..|+.+++++|++++.++ +..|   ..|     
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~G--adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~  179 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHG--FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDD  179 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcC--CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-ccccccccccccccc
Confidence                     012345555555555  555555555555555332  344555555555555443 2222   122     


Q ss_pred             ------CcHHHHHHh-----------hCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCch--HHHHHHH
Q 042244          129 ------SLPVIQAAY-----------HGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLY--DVALDLL  182 (368)
Q Consensus       129 ------~tpLh~Aa~-----------~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~--~~~~~Ll  182 (368)
                            .||||+|+.           +++.+++++|++.|.+.+. +|.+|.||||.|++.|+.  ++++.|+
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~-~d~~G~TpLh~A~~~g~~~~eivk~Li  251 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS-IDKNYCTALQYYIKSSHIDIDIVKLLM  251 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc-CCCCCCcHHHHHHHcCCCcHHHHHHHH
Confidence                  355555543           2345555555555555554 555555555555555553  4555554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.4e-22  Score=177.66  Aligned_cols=151  Identities=16%  Similarity=0.196  Sum_probs=130.4

Q ss_pred             hhhccCChHHHHHHHhC--CHHHHHHHHHcCCcccccccCCCCCcHHHHHHHc---CCcccccCChHHHHHHHHhcCCch
Q 042244           11 DEYCARYWPLYRMIEKN--DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVE---LWVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G--~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~---g~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      ..+..|.||||.|+..+  +.++++.|++.+.+.. ...+..|.||||+|+..   ++        .++++.|++++  .
T Consensus        46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn-~~~~~~g~TpLh~a~~~~~~~~--------~eiv~~Ll~~g--a  114 (209)
T PHA02859         46 DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN-FKTRDNNLSALHHYLSFNKNVE--------PEILKILIDSG--S  114 (209)
T ss_pred             ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC-ccCCCCCCCHHHHHHHhCcccc--------HHHHHHHHHCC--C
Confidence            45667999999999855  8999999999987763 33235899999998864   46        99999999998  8


Q ss_pred             hhhchhcCCCcHHHHHHH--cCCHHHHHHHHhhCCCCccccCCCCCcHHHH-HHhhCCHHHHHHHHhhCCCCccccCCCC
Q 042244           86 TLEQRDDIGYTALYQCAV--KGNLRALKVLVKYNPDLTNKRDTLDSLPVIQ-AAYHGHKDTFQYLREVTHGVDIYSGNDG  162 (368)
Q Consensus        86 ~~~~~d~~G~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~-Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  162 (368)
                      +++.+|.+|.||||.|+.  .++.+++++|++.+.+. +.+|.+|+||||. |+..++.+++++|++.+.+... +|..|
T Consensus       115 din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~-~d~~g  192 (209)
T PHA02859        115 SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINE-TNKSG  192 (209)
T ss_pred             CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCC
Confidence            899999999999999986  46899999999999765 8899999999996 5667899999999999998886 99999


Q ss_pred             chHHHHHHHhCc
Q 042244          163 ANMLSRLIDATL  174 (368)
Q Consensus       163 ~t~Lh~a~~~~~  174 (368)
                      .||||+|..++-
T Consensus       193 ~tpl~la~~~~~  204 (209)
T PHA02859        193 YNCYDLIKFRNL  204 (209)
T ss_pred             CCHHHHHhhhhh
Confidence            999999987653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.3e-22  Score=197.79  Aligned_cols=164  Identities=17%  Similarity=0.186  Sum_probs=139.1

Q ss_pred             hhhccCChHHHHHHHh---CCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHc--CCcccccCChHHHHHHHHhcCCch
Q 042244           11 DEYCARYWPLYRMIEK---NDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVE--LWVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~---G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~--g~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      ..+..|.||||.|+..   |+.|+++.|++.+.+.. ...|..|+||||+|+..  ++        .++++.|++++  .
T Consensus       103 ~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin-~~~d~~g~tpLh~a~~~~~~~--------~~iv~~Ll~~G--a  171 (494)
T PHA02989        103 LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN-DVKNSRGYNLLHMYLESFSVK--------KDVIKILLSFG--V  171 (494)
T ss_pred             CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc-cccCCCCCCHHHHHHHhccCC--------HHHHHHHHHcC--C
Confidence            4566799999988765   68999999999876552 23478999999998865  56        89999999998  6


Q ss_pred             hhhc-hhcCCCcHHHHHHHcC----CHHHHHHHHhhCCCC-------------------------------------ccc
Q 042244           86 TLEQ-RDDIGYTALYQCAVKG----NLRALKVLVKYNPDL-------------------------------------TNK  123 (368)
Q Consensus        86 ~~~~-~d~~G~tpLh~A~~~g----~~~~v~~Ll~~~~~~-------------------------------------~~~  123 (368)
                      +++. .|..|.||||+|+..+    +.+++++|++++.++                                     ++.
T Consensus       172 di~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~  251 (494)
T PHA02989        172 NLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINK  251 (494)
T ss_pred             CccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCC
Confidence            6666 6788999999987654    889999999876432                                     245


Q ss_pred             cCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCC
Q 042244          124 RDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYP  186 (368)
Q Consensus       124 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~  186 (368)
                      +|.+|+||||+|+..|+.+++++|++.|++.+. +|.+|+||||.|++.++.++++.|++..+
T Consensus       252 ~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~-~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        252 KDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYN-VSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            677899999999999999999999999999987 99999999999999999999999998764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.88  E-value=8.6e-22  Score=194.58  Aligned_cols=181  Identities=12%  Similarity=0.025  Sum_probs=150.3

Q ss_pred             ccCChHHHHHHH--hCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHc-----CCcccccCChHHHHHHHHhcCCchh
Q 042244           14 CARYWPLYRMIE--KNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVE-----LWVDVESDDATCLLDKLASKVDPQT   86 (368)
Q Consensus        14 ~~g~t~Lh~A~~--~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~-----g~~~~~~~~~~~~v~~Ll~~~~p~~   86 (368)
                      ..++|+++.+..  .++.++++.|++.+.+.  ...|..|.||||.|+..     ++        .++++.|++.+  ++
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv--n~~d~~g~TpL~~~~~n~~~~~~~--------~~iv~~Ll~~G--ad  101 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANV--NGLDNEYSTPLCTILSNIKDYKHM--------LDIVKILIENG--AD  101 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCC--CCCCCCCCChHHHHHHhHHhHHhH--------HHHHHHHHHCC--CC
Confidence            567787765544  44799999999997765  34488999999999864     66        89999999998  88


Q ss_pred             hhchhcCCCcHHHHHHHcC---CHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCC---HHHHHHHHhhCCCCccccCC
Q 042244           87 LEQRDDIGYTALYQCAVKG---NLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGH---KDTFQYLREVTHGVDIYSGN  160 (368)
Q Consensus        87 ~~~~d~~G~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~---~~~v~~Ll~~~~~~~~~~~~  160 (368)
                      ++.+|..|+||||+|+..+   +.+++++|+++++++ +.+|.+|.||||+|++.++   .+++++|++.+.+.+...+.
T Consensus       102 iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~  180 (489)
T PHA02798        102 INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNK  180 (489)
T ss_pred             CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCc
Confidence            9999999999999999876   689999999999876 8999999999999999998   99999999999988763356


Q ss_pred             CCchHHHHHHHhC----chHHHHHHHHhCC--------------------------------------cccccCCCCCCc
Q 042244          161 DGANMLSRLIDAT----LYDVALDLLKLYP--------------------------------------TIGRDNIDSRRI  198 (368)
Q Consensus       161 ~g~t~Lh~a~~~~----~~~~~~~Ll~~~~--------------------------------------~~~~~~~~~g~T  198 (368)
                      .|.||||.+++.+    +.++++.|++.+.                                      .+.+.+|..|+|
T Consensus       181 ~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~T  260 (489)
T PHA02798        181 EKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFN  260 (489)
T ss_pred             CCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCcc
Confidence            7999999987643    6788888887652                                      134457788999


Q ss_pred             HHHHHhcCC
Q 042244          199 VLNALAEKP  207 (368)
Q Consensus       199 pl~l~~~~~  207 (368)
                      |||+|+...
T Consensus       261 PL~~A~~~~  269 (489)
T PHA02798        261 PLYYSVSHN  269 (489)
T ss_pred             HHHHHHHcC
Confidence            999988753

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.3e-22  Score=186.26  Aligned_cols=158  Identities=18%  Similarity=0.148  Sum_probs=145.7

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      .+.-.|.+||..|+..||.|+|+.|++...++  ........|||.-||..|+        .++||+|++++  ++++..
T Consensus        79 ge~IegappLWaAsaAGHl~vVk~L~~~ga~V--N~tT~TNStPLraACfDG~--------leivKyLvE~g--ad~~Ia  146 (615)
T KOG0508|consen   79 GETIEGAPPLWAASAAGHLEVVKLLLRRGASV--NDTTRTNSTPLRAACFDGH--------LEIVKYLVEHG--ADPEIA  146 (615)
T ss_pred             CcccCCCchhhHHhccCcHHHHHHHHHhcCcc--ccccccCCccHHHHHhcch--------hHHHHHHHHcC--CCCccc
Confidence            34667889999999999999999999998554  3445667899999999999        99999999998  999999


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      |+.|.|.||+||.+|+.+++++|++.+.++ +.++..|+|+||.+++.|+.|++++|++++....  +|..|.|||-.|.
T Consensus       147 nrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~--~d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  147 NRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID--VDGHGMTPLLLAA  223 (615)
T ss_pred             ccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCceee--ecCCCCchHHHHh
Confidence            999999999999999999999999999887 9999999999999999999999999999988763  7889999999999


Q ss_pred             HhCchHHHHHHHH
Q 042244          171 DATLYDVALDLLK  183 (368)
Q Consensus       171 ~~~~~~~~~~Ll~  183 (368)
                      ..|+.++++.|++
T Consensus       224 ~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  224 VTGHTDIVERLLQ  236 (615)
T ss_pred             hhcchHHHHHHhc
Confidence            9999999999995

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=9.8e-22  Score=201.61  Aligned_cols=190  Identities=20%  Similarity=0.178  Sum_probs=134.6

Q ss_pred             hhhhccCChHHHHHHHhC-CHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCccccc--------------------
Q 042244           10 EDEYCARYWPLYRMIEKN-DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVES--------------------   68 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G-~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~--------------------   68 (368)
                      ...+..|+||+|.|+..| ..+....+++.. ... ......|.||||+|+..||.+++.                    
T Consensus       434 ~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g-~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~l  511 (1143)
T KOG4177|consen  434 NAKAKLGYTPLHVAAKKGRYLQIARLLLQYG-ADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPL  511 (1143)
T ss_pred             hhHhhcCCChhhhhhhcccHhhhhhhHhhcC-CCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchh
Confidence            344556677777777777 444444444432 222 233566777777777777744440                    


Q ss_pred             -----CChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHH
Q 042244           69 -----DDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDT  143 (368)
Q Consensus        69 -----~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~  143 (368)
                           .++...++.+++++  ...+.++..|+||||.|+.+|+.++|++|++++.++ +.+|+.|+||||.||.+|+.++
T Consensus       512 hla~~~~~v~~~~~l~~~g--a~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  512 HLAADEDTVKVAKILLEHG--ANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             hhhhhhhhHHHHHHHhhcC--CceehhcccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHH
Confidence                 12266666777776  667778888888888888888888888888888765 7777888888888888888888


Q ss_pred             HHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcc-----cccCCCCCCcHHHHHhcC
Q 042244          144 FQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTI-----GRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       144 v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~Tpl~l~~~~  206 (368)
                      +++|++++++.+. .|.+|+||||+|+..|++++++.+...+ ..     ....+.+|.+|.++....
T Consensus       589 ~~LLlk~GA~vna-~d~~g~TpL~iA~~lg~~~~~k~l~~~~-~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  589 AELLLKHGASVNA-ADLDGFTPLHIAVRLGYLSVVKLLKVVT-ATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             HHHHHHcCCCCCc-ccccCcchhHHHHHhcccchhhHHHhcc-CccccccchhhhhcccChhhHHHHh
Confidence            8888888888876 8888888888888888888888777665 33     455667788888876543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=1.1e-21  Score=201.28  Aligned_cols=187  Identities=16%  Similarity=0.069  Sum_probs=157.4

Q ss_pred             CccchhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcC-CcccccCChHHHHHHHHhcCCc
Q 042244            6 DDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVEL-WVDVESDDATCLLDKLASKVDP   84 (368)
Q Consensus         6 ~~~~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g-~~~~~~~~~~~~v~~Ll~~~~p   84 (368)
                      +...+.....|.||||.|+..++.++++.+++...+.  ...+..|.||+|+|+..| +        .+....+++.+  
T Consensus       397 ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~--~~~~~lG~T~lhvaa~~g~~--------~~~~~~l~~~g--  464 (1143)
T KOG4177|consen  397 GADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP--NAKAKLGYTPLHVAAKKGRY--------LQIARLLLQYG--  464 (1143)
T ss_pred             cCCcccCCCCCcceeeehhhccCcceEEEEeccCCCh--hhHhhcCCChhhhhhhcccH--------hhhhhhHhhcC--
Confidence            3335667788999999999999999999999863332  233888999999999999 6        66666666666  


Q ss_pred             hhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhC---------------------------------CCCccccCCCCCcH
Q 042244           85 QTLEQRDDIGYTALYQCAVKGNLRALKVLVKYN---------------------------------PDLTNKRDTLDSLP  131 (368)
Q Consensus        85 ~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~---------------------------------~~~~~~~d~~G~tp  131 (368)
                      ..++..-..|.||||+|+..|+.++++.+++..                                 .. .+.++..|+||
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~Tp  543 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTP  543 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccch
Confidence            666777777777777777777777777776632                                 22 36788889999


Q ss_pred             HHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          132 VIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       132 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ||.|+.+|+.++|++|++++++... +++.|+||||.|+..|+.++++.|++++ ..++..|.+|.|||+.+.+..
T Consensus       544 Lh~A~~~g~v~~VkfLLe~gAdv~a-k~~~G~TPLH~Aa~~G~~~i~~LLlk~G-A~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  544 LHVAVHYGNVDLVKFLLEHGADVNA-KDKLGYTPLHQAAQQGHNDIAELLLKHG-ASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             HHHHHhcCCchHHHHhhhCCccccc-cCCCCCChhhHHHHcChHHHHHHHHHcC-CCCCcccccCcchhHHHHHhc
Confidence            9999999999999999999999997 8999999999999999999999999987 999999999999999998864

>PHA02795 ankyrin-like protein; Provisional

Probab=99.87  E-value=5e-21  Score=181.18  Aligned_cols=173  Identities=9%  Similarity=-0.012  Sum_probs=150.4

Q ss_pred             HHHHhCCHHHHHHHHHcCCccc----ccccCCCCCcHHHHHHH--cCCcccccCChHHHHHHHHhcCCchhhhchhcCCC
Q 042244           22 RMIEKNDWRGVEDFVTNDPDAL----TAKTIAPGSMTIFHAIV--ELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGY   95 (368)
Q Consensus        22 ~A~~~G~~~~v~~Ll~~~p~~~----~~~~~~~g~tpLh~A~~--~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~   95 (368)
                      .|+..+..|+++.|+..+.+..    .-..+..++|+||.++.  .|+        .++++.|+++|  ++++.  .++.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~--------~eiV~~LI~~G--ADIn~--~~~~  150 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVE--------IDIVDFMVDHG--AVIYK--IECL  150 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCC--------HHHHHHHHHCC--CCCCC--CCCC
Confidence            8999999999999999865421    01346779999999999  778        99999999999  77766  3558


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCcccc-----CCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244           96 TALYQCAVKGNLRALKVLVKYNPDLTNKR-----DTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus        96 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      ||+|.|+..|+.+++++|+.++.+..+..     +..|.||+|.|+..++.+++++|++++++.+. +|.+|+||||.|+
T Consensus       151 t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~-kD~~G~TpLh~Aa  229 (437)
T PHA02795        151 NAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ-LDAGGRTLLYRAI  229 (437)
T ss_pred             CHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc-CCCCCCCHHHHHH
Confidence            99999999999999999999986433333     23588999999999999999999999999887 9999999999999


Q ss_pred             HhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCCC
Q 042244          171 DATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPY  208 (368)
Q Consensus       171 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~~  208 (368)
                      ..|+.++++.|++.+ +..+.+|.+|.||||.|+.+.+
T Consensus       230 ~~g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        230 YAGYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCC
Confidence            999999999999887 8999999999999999998754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.86  E-value=4.9e-21  Score=181.21  Aligned_cols=160  Identities=17%  Similarity=0.104  Sum_probs=139.7

Q ss_pred             hhccCChHHHHHHH--hCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           12 EYCARYWPLYRMIE--KNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~--~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      .+.+++|+||.++.  .|+.|+|+.|++.+.+.- .   .++.||||.|+..|+        .++++.|++++.+ ..+.
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn-~---~~~~t~lh~A~~~~~--------~eIVk~Lls~Ga~-~~n~  178 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY-K---IECLNAYFRGICKKE--------SSVVEFILNCGIP-DEND  178 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCC-C---CCCCCHHHHHHHcCc--------HHHHHHHHhcCCc-cccc
Confidence            55668999999999  999999999999987653 1   356899999999999        9999999999821 2222


Q ss_pred             h-----hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCch
Q 042244           90 R-----DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGAN  164 (368)
Q Consensus        90 ~-----d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  164 (368)
                      .     +..|.+++|.|+..++.+++++|++++++. +.+|.+|+||||+|+..|+.+++++|++.|++.+. +|.+|.|
T Consensus       179 ~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~-~d~~G~T  256 (437)
T PHA02795        179 VKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA-VMSNGYT  256 (437)
T ss_pred             ccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCC
Confidence            2     245889999999999999999999999775 99999999999999999999999999999999987 9999999


Q ss_pred             HHHHHHHhCc--------hHHHHHHHHhCC
Q 042244          165 MLSRLIDATL--------YDVALDLLKLYP  186 (368)
Q Consensus       165 ~Lh~a~~~~~--------~~~~~~Ll~~~~  186 (368)
                      |||.|+..|+        .++++.|+++++
T Consensus       257 pLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        257 CLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             HHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            9999999984        589998988763

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.86  E-value=1.4e-21  Score=163.33  Aligned_cols=173  Identities=13%  Similarity=0.096  Sum_probs=146.9

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      +.+.-+++|+..++.+-+.+.+..+.+..   + ..+|+.|.|||.||+..|+        +++|++||+.+  +++...
T Consensus       124 evs~~p~s~~slsVhql~L~~~~~~~~n~---V-N~~De~GfTpLiWAaa~G~--------i~vV~fLL~~G--Adp~~l  189 (296)
T KOG0502|consen  124 EVSLMPWSPLSLSVHQLHLDVVDLLVNNK---V-NACDEFGFTPLIWAAAKGH--------IPVVQFLLNSG--ADPDAL  189 (296)
T ss_pred             ccccccCChhhHHHHHHHHHHHHHHhhcc---c-cCccccCchHhHHHHhcCc--------hHHHHHHHHcC--CChhhh
Confidence            44556778888888887777766665443   2 4558899999999999999        99999999998  788888


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      .+...++|.+|++.|-.++|++|+++++++ |.-|.+|-|||-+|++.+|.++++.|++.+++... .+..|++++..|+
T Consensus       190 gk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~-e~dsGy~~mdlAV  267 (296)
T KOG0502|consen  190 GKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQ-EDDSGYWIMDLAV  267 (296)
T ss_pred             hhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHhcCCCccc-ccccCCcHHHHHH
Confidence            888889999999999999999999999886 89999999999999999999999999999998886 8889999999999


Q ss_pred             HhCchHHHHHHHHhCCcccccCCCCCCcHHH
Q 042244          171 DATLYDVALDLLKLYPTIGRDNIDSRRIVLN  201 (368)
Q Consensus       171 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~  201 (368)
                      ..|+. ++++.+++. .++..+|+.-+||+|
T Consensus       268 alGyr-~Vqqvie~h-~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  268 ALGYR-IVQQVIEKH-ALKLCQDSEKRTPLH  296 (296)
T ss_pred             HhhhH-HHHHHHHHH-HHHHhhcccCCCCCC
Confidence            99887 888888886 788888888777765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.7e-20  Score=185.60  Aligned_cols=180  Identities=14%  Similarity=0.032  Sum_probs=146.7

Q ss_pred             hhhccCChHHHHHHHhC---CHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcC--CcccccCChHHHHHHHHhcCCch
Q 042244           11 DEYCARYWPLYRMIEKN---DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVEL--WVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G---~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g--~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      ..+..|.||||.|+..|   +.|+|+.|++++.+..  ..|.+|+||||+|+..+  +        .|+++.|++.+..+
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin--~kD~~G~TPLh~Aa~~~~~~--------~eIv~~Ll~~~~~~  105 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERL--CRNNEGLTPLGVYSKRKYVK--------SQIVHLLISSYSNA  105 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCc--ccCCCCCChHHHHHHcCCCc--------HHHHHHHHhcCCCC
Confidence            45567999999999997   5999999999876653  44899999999999977  7        99999999997334


Q ss_pred             hhhchhcCCCcHHHHHHH--cCCHHHHHHHHhhC-CCCcccc----C-CCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc-
Q 042244           86 TLEQRDDIGYTALYQCAV--KGNLRALKVLVKYN-PDLTNKR----D-TLDSLPVIQAAYHGHKDTFQYLREVTHGVDI-  156 (368)
Q Consensus        86 ~~~~~d~~G~tpLh~A~~--~g~~~~v~~Ll~~~-~~~~~~~----d-~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-  156 (368)
                      ..+..|..+.+|||.++.  .++.+++++|++.+ .+. +..    + ..|.+|+++|+..++.|++++|++.+++..- 
T Consensus       106 ~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~-~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~  184 (672)
T PHA02730        106 SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRP-SKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGY  184 (672)
T ss_pred             CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCCh-hhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccc
Confidence            557788889999999998  88899999999733 232 222    2 3799999999999999999999999988731 


Q ss_pred             -----ccCCCCc-hHHHHH------HHhCchHHHHHHHHhCCcccccCCCCCCcHHHH
Q 042244          157 -----YSGNDGA-NMLSRL------IDATLYDVALDLLKLYPTIGRDNIDSRRIVLNA  202 (368)
Q Consensus       157 -----~~~~~g~-t~Lh~a------~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l  202 (368)
                           ..+..+. |.||+.      ...++.|+++.|++.| ++++.+|++|.||||.
T Consensus       185 ~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G-adIN~kd~~G~TpLh~  241 (672)
T PHA02730        185 VFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN-VSIHGRDEGGSLPIQY  241 (672)
T ss_pred             ccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC-CCCCCCCCCCCCHHHH
Confidence                 1334444 556632      4567889999999998 9999999999999996

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=3.3e-20  Score=157.25  Aligned_cols=128  Identities=15%  Similarity=0.133  Sum_probs=110.2

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcC----CchhhhchhcCCCcHHHHHHHcCC----HHHHHHHHhhCCC
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKV----DPQTLEQRDDIGYTALYQCAVKGN----LRALKVLVKYNPD  119 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~----~p~~~~~~d~~G~tpLh~A~~~g~----~~~v~~Ll~~~~~  119 (368)
                      |..|+||||+|++.|+        .++++.|+...    ....++.+|..|+||||+|+..|+    .+++++|++.+.+
T Consensus        18 ~~~g~t~Lh~Aa~~g~--------~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad   89 (169)
T PHA02741         18 NSEGENFFHEAARCGC--------FDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD   89 (169)
T ss_pred             ccCCCCHHHHHHHcCC--------HHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC
Confidence            7789999999999999        99999886531    125688899999999999999998    5888999998877


Q ss_pred             CccccCC-CCCcHHHHHHhhCCHHHHHHHHhh-CCCCccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          120 LTNKRDT-LDSLPVIQAAYHGHKDTFQYLREV-THGVDIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       120 ~~~~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      + +.+|. +|+||||+|+..++.+++++|++. +.+... .|.+|+||||.|+..++.++++.|++.+
T Consensus        90 i-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~-~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         90 I-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF-CNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             C-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            5 77775 899999999999999999999974 777665 8999999999999999999999888765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=8.5e-21  Score=169.38  Aligned_cols=166  Identities=19%  Similarity=0.198  Sum_probs=139.8

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCccccc-CChHHHHHHHHhcCCchhhhch
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVES-DDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~-~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      .+.+|+|+||+++..+|+++|+.||+.+.-.+ .+.|..|.||+++|+...-    + +...++|..|.+.+  ..--..
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~V-D~qNrAGYtpiMLaALA~l----k~~~d~~vV~~LF~mg--nVNaKA  336 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDV-DQQNRAGYTPVMLAALAKL----KQPADRTVVERLFKMG--DVNAKA  336 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccc-cccccccccHHHHHHHHhh----cchhhHHHHHHHHhcc--Ccchhh
Confidence            46789999999999999999999999865555 5668899999999887543    1 22378999999987  322233


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      ...|+|+|.+|+.+|+.++++.|+..+.++ |.+|.+|-|+|+.||++||.|+++.||..........|.+|.|+|.+|.
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL  415 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence            457999999999999999999999999876 9999999999999999999999999998754443359999999999999


Q ss_pred             HhCchHHHHHHHHhC
Q 042244          171 DATLYDVALDLLKLY  185 (368)
Q Consensus       171 ~~~~~~~~~~Ll~~~  185 (368)
                      ..|+.|+..+|..+.
T Consensus       416 eagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  416 EAGHREIAVMLYAHM  430 (452)
T ss_pred             hcCchHHHHHHHHHH
Confidence            999999998777653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.84  E-value=3e-20  Score=187.61  Aligned_cols=133  Identities=11%  Similarity=-0.037  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHcCCcccccccCCCCCcHHHHHH--HcCCcccccCChHHHHHHHHhcCCchhhhchhc---CC--------
Q 042244           28 DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAI--VELWVDVESDDATCLLDKLASKVDPQTLEQRDD---IG--------   94 (368)
Q Consensus        28 ~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~--~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~---~G--------   94 (368)
                      +.|+++.|++.+.+.  ...|.+|+||||.|+  ..|+        .++++.|++++  ++++.+|.   .|        
T Consensus       115 ~~e~vk~Ll~~Gadi--n~~d~~g~T~L~~~~a~~~~~--------~eivklLi~~G--a~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        115 DVDLIKVLVEHGFDL--SVKCENHRSVIENYVMTDDPV--------PEIIDLFIENG--CSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             CHHHHHHHHHcCCCC--CccCCCCccHHHHHHHccCCC--------HHHHHHHHHcC--CCccccccccccccccccccc
Confidence            334444444443222  234778999999654  5678        99999999998  76665543   34        


Q ss_pred             ---CcHHHHHHH-----------cCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCH--HHHHHHHhhCCCCcc--
Q 042244           95 ---YTALYQCAV-----------KGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHK--DTFQYLREVTHGVDI--  156 (368)
Q Consensus        95 ---~tpLh~A~~-----------~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~--~~v~~Ll~~~~~~~~--  156 (368)
                         .||||+|+.           .++.+++++|++.+.++ +.+|.+|+||||+|+.+|+.  ++++.|++ +.+...  
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~  260 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYS  260 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccc
Confidence               599999986           46899999999999776 89999999999999999985  79999975 654431  


Q ss_pred             -ccCCCCchHHHHHHHhCc
Q 042244          157 -YSGNDGANMLSRLIDATL  174 (368)
Q Consensus       157 -~~~~~g~t~Lh~a~~~~~  174 (368)
                       ..|..|.+++|+++..++
T Consensus       261 ~~~~~~~~~~~~~a~yl~~  279 (661)
T PHA02917        261 YIDDLTCCTRGIMADYLNS  279 (661)
T ss_pred             cccCcccccchHHHHHHHh
Confidence             366778899999886555

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=3.3e-20  Score=156.62  Aligned_cols=133  Identities=12%  Similarity=0.035  Sum_probs=68.6

Q ss_pred             ccCChHHHHHHHhCCHHHHHH----HHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           14 CARYWPLYRMIEKNDWRGVED----FVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~----Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      ..+.++||.|++.|+.+.+++    |++..+. . ...|.+|+||||+|+..|+.++     .++++.|++.+  ..++.
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~-~~~d~~g~t~Lh~Aa~~g~~~~-----~~~i~~Ll~~G--adin~   88 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHL-L-HRYDHHGRQCTHMVAWYDRANA-----VMKIELLVNMG--ADINA   88 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-h-hccCCCCCcHHHHHHHhCccCH-----HHHHHHHHHcC--CCCCC
Confidence            344455666666666533332    2222221 2 2335556666666666555100     12245555555  44555


Q ss_pred             hh-cCCCcHHHHHHHcCCHHHHHHHHh-hCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc
Q 042244           90 RD-DIGYTALYQCAVKGNLRALKVLVK-YNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI  156 (368)
Q Consensus        90 ~d-~~G~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~  156 (368)
                      +| ..|+||||+|+..|+.+++++|++ .+.+. +.+|.+|+||||+|+..++.+++++|++.+.+...
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            55 356666666666666666666654 33332 45555666666666666666666666665555443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.84  E-value=4.7e-20  Score=192.32  Aligned_cols=145  Identities=17%  Similarity=0.102  Sum_probs=132.9

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCC
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTL  127 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  127 (368)
                      +.++.++||.||..|+        .++++.|++.+  .+++.+|.+|+||||+|+..|+.+++++|++++.+. +.+|.+
T Consensus       522 ~~~~~~~L~~Aa~~g~--------~~~l~~Ll~~G--~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~  590 (823)
T PLN03192        522 DPNMASNLLTVASTGN--------AALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDAN  590 (823)
T ss_pred             CccchhHHHHHHHcCC--------HHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCC
Confidence            5567899999999999        99999999998  778999999999999999999999999999998765 889999


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          128 DSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       128 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |+||||+|+..|+.++++.|++.+...   ...+|.++||.|+..|+.++++.|++.+ .+.+.+|++|+||||+|+++.
T Consensus       591 G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        591 GNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMAED  666 (823)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCC
Confidence            999999999999999999999876654   3467889999999999999999999887 888999999999999998764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=4.6e-20  Score=155.79  Aligned_cols=138  Identities=11%  Similarity=-0.006  Sum_probs=118.7

Q ss_pred             cCCCCCcHHHHHHHcCCcccccCChH----HHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHH---HHHHHHhhCCC
Q 042244           47 TIAPGSMTIFHAIVELWVDVESDDAT----CLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLR---ALKVLVKYNPD  119 (368)
Q Consensus        47 ~~~~g~tpLh~A~~~g~~~~~~~~~~----~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~---~v~~Ll~~~~~  119 (368)
                      .+.++.+++|.||+.|+        .    ++++.|.+.+  ..++.+|..|+||||+|+..|+.+   ++++|++.+.+
T Consensus        16 ~~~~~~~~l~~a~~~g~--------~~~l~~~~~~l~~~g--~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad   85 (166)
T PHA02743         16 IDEDEQNTFLRICRTGN--------IYELMEVAPFISGDG--HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD   85 (166)
T ss_pred             hccCCCcHHHHHHHcCC--------HHHHHHHHHHHhhcc--hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC
Confidence            46788899999999999        7    5555666666  678889999999999999998865   48999999876


Q ss_pred             CccccC-CCCCcHHHHHHhhCCHHHHHHHHh-hCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCC
Q 042244          120 LTNKRD-TLDSLPVIQAAYHGHKDTFQYLRE-VTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRR  197 (368)
Q Consensus       120 ~~~~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  197 (368)
                      . +.+| ..|+||||+|+.+++.+++++|++ .+.+... +|.+|+||||+|+..++.++++.|++.+ ...+.++..|.
T Consensus        86 i-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~-~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~  162 (166)
T PHA02743         86 I-NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA-INYQHETAYHIAYKMRDRRMMEILRANG-AVCDDPLSIGL  162 (166)
T ss_pred             C-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcccCCc
Confidence            5 7887 589999999999999999999995 6777776 9999999999999999999999999886 77777777664

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1e-20  Score=158.01  Aligned_cols=135  Identities=11%  Similarity=-0.018  Sum_probs=101.1

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHc----CCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchh
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTN----DPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQT   86 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~----~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~   86 (368)
                      ..+..|.||||+|++.|+.+.+......    ++... ...|.+|+||||+|+..|+.+.     .++++.|++.+  ..
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~-~~~d~~g~t~Lh~a~~~~~~~~-----~e~v~~Ll~~g--ad   83 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLV-LEYNRHGKQCVHIVSNPDKADP-----QEKLKLLMEWG--AD   83 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHH-HHhcCCCCEEEEeecccCchhH-----HHHHHHHHHcC--CC
Confidence            4456799999999999985433222111    12222 3457889999999999888111     25678888888  67


Q ss_pred             hhchh-cCCCcHHHHHHHcCCHHHHHHHHhh-CCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCC
Q 042244           87 LEQRD-DIGYTALYQCAVKGNLRALKVLVKY-NPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGV  154 (368)
Q Consensus        87 ~~~~d-~~G~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~  154 (368)
                      ++.+| ..|+||||+|+..|+.+++++|+++ +.+ ++.+|..|+||||+|+..|+.+++++|++.+++.
T Consensus        84 in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         84 INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            78887 4899999999999999999999875 544 4788889999999999999999999998887664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=3e-20  Score=192.45  Aligned_cols=182  Identities=18%  Similarity=0.095  Sum_probs=126.0

Q ss_pred             hhccCChHHH-HHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCch-----
Q 042244           12 EYCARYWPLY-RMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQ-----   85 (368)
Q Consensus        12 ~~~~g~t~Lh-~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~-----   85 (368)
                      .+..|.|||| .|+.+++.++++.|++.+.      .+..|+||||.|+.+++     ++..++++.+.+.. +.     
T Consensus        48 ~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~-----~~v~~ll~~l~~~~-~~~~~~~  115 (743)
T TIGR00870        48 PDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLEYV-----DAVEAILLHLLAAF-RKSGPLE  115 (743)
T ss_pred             cCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccH-----HHHHHHHHHHhhcc-cccCchh
Confidence            4456777887 6666666676666666542      25667788887776322     00023333333332 11     


Q ss_pred             hhh----chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCcccc--------------CCCCCcHHHHHHhhCCHHHHHHH
Q 042244           86 TLE----QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKR--------------DTLDSLPVIQAAYHGHKDTFQYL  147 (368)
Q Consensus        86 ~~~----~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~--------------d~~G~tpLh~Aa~~g~~~~v~~L  147 (368)
                      ..+    ..+..|.||||+|+..|+.+++++|++++.++ +.+              ...|+||||.|+..|+.+++++|
T Consensus       116 ~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lL  194 (743)
T TIGR00870       116 LANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL  194 (743)
T ss_pred             hhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHH
Confidence            111    12346999999999999999999999998765 322              13599999999999999999999


Q ss_pred             HhhCCCCccccCCCCchHHHHHHHhCc---------hHHHHHHHHhCC------cccccCCCCCCcHHHHHhcCC
Q 042244          148 REVTHGVDIYSGNDGANMLSRLIDATL---------YDVALDLLKLYP------TIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       148 l~~~~~~~~~~~~~g~t~Lh~a~~~~~---------~~~~~~Ll~~~~------~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ++.+++.+. +|..|+||||+|+..+.         ..+.+.++....      +..+.+|++|.||+|+|++..
T Consensus       195 l~~gadin~-~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       195 SEDPADILT-ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             hcCCcchhh-HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC
Confidence            999988876 99999999999998862         123333333321      123678999999999998764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=3.5e-20  Score=191.92  Aligned_cols=178  Identities=16%  Similarity=-0.022  Sum_probs=140.7

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHH-HHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcC
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIF-HAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDI   93 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh-~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~   93 (368)
                      .+.++++.|++.|+.+.++.+++..+.......|..|+|||| .|+.+++        .++++.|++.+  .    .|..
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~--------~eiv~lLl~~g--~----~~~~   81 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENEN--------LELTELLLNLS--C----RGAV   81 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcCh--------HHHHHHHHhCC--C----CCCc
Confidence            456899999999999999999987332221445889999999 8888888        99999999987  3    6888


Q ss_pred             CCcHHHHHHHcCC---HHHHHHHHhhCCC-----Cc----cccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccc----
Q 042244           94 GYTALYQCAVKGN---LRALKVLVKYNPD-----LT----NKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIY----  157 (368)
Q Consensus        94 G~tpLh~A~~~g~---~~~v~~Ll~~~~~-----~~----~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~----  157 (368)
                      |.||||.|+..+.   .++++.+.+..+.     ..    ...+..|.||||+|+.+|+.++++.|++++++.+..    
T Consensus        82 G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~  161 (743)
T TIGR00870        82 GDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGD  161 (743)
T ss_pred             ChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCc
Confidence            9999999997322   2334444443322     11    112356999999999999999999999999876541    


Q ss_pred             ---------cCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          158 ---------SGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       158 ---------~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                               ...+|+||||.|+..++.++++.|++++ .+.+.+|+.|+||+|+|+...
T Consensus       162 ~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-adin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       162 FFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP-ADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC-cchhhHhhhhhHHHHHHHhhh
Confidence                     1136999999999999999999999876 789999999999999987764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=6e-20  Score=155.68  Aligned_cols=135  Identities=17%  Similarity=0.076  Sum_probs=112.7

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcC-----CcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTND-----PDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~-----p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      .++..|.||||.|++.|+.++++.+++..     ...+ ...|..|+||||+|+..|+.+++    .++++.|++.+  .
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~----~~ii~~Ll~~g--a   88 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLA----AEIIDHLIELG--A   88 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHH----HHHHHHHHHcC--C
Confidence            44678999999999999999999986421     1223 45588999999999999992222    37889999987  7


Q ss_pred             hhhchhc-CCCcHHHHHHHcCCHHHHHHHHhh-CCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCC
Q 042244           86 TLEQRDD-IGYTALYQCAVKGNLRALKVLVKY-NPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG  153 (368)
Q Consensus        86 ~~~~~d~-~G~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~  153 (368)
                      +++.+|. +|+||||+|+..++.+++++|++. +.+ ++..|.+|+||||.|+..++.++++.|++.+..
T Consensus        89 din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         89 DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7888885 899999999999999999999985 554 488999999999999999999999999987644

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.83  E-value=1.4e-20  Score=181.85  Aligned_cols=170  Identities=15%  Similarity=0.011  Sum_probs=137.3

Q ss_pred             cchhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhh
Q 042244            8 QEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTL   87 (368)
Q Consensus         8 ~~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~   87 (368)
                      ....++.+|+|.||.|+.+|+.++++.|++..+-+  ..+|..|.+|||+|+..|+        .++++.++...  +..
T Consensus        41 s~n~qd~~gfTalhha~Lng~~~is~llle~ea~l--dl~d~kg~~plhlaaw~g~--------~e~vkmll~q~--d~~  108 (854)
T KOG0507|consen   41 SHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL--DLCDTKGILPLHLAAWNGN--------LEIVKMLLLQT--DIL  108 (854)
T ss_pred             cccccCccchhHHHHHHhcCchHHHHHHhcchhhh--hhhhccCcceEEehhhcCc--------chHHHHHHhcc--cCC
Confidence            33455669999999999999999999999986654  4557899999999999999        99999999988  778


Q ss_pred             hchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCC-------ccccCC
Q 042244           88 EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGV-------DIYSGN  160 (368)
Q Consensus        88 ~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~-------~~~~~~  160 (368)
                      +..+..|.||||.|+.+|+.+++.+|++++.+. -.+|+++.|+|-+|++.|+.++++.|++..-..       ...++-
T Consensus       109 na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~  187 (854)
T KOG0507|consen  109 NAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPF  187 (854)
T ss_pred             CcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCC
Confidence            889999999999999999999999999988664 678888888888888888888888888762111       013455


Q ss_pred             CCchHHHHHHHhCchHHHHHHHHhCCccccc
Q 042244          161 DGANMLSRLIDATLYDVALDLLKLYPTIGRD  191 (368)
Q Consensus       161 ~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~  191 (368)
                      .+-+|||+|.++|+.++++.|++.+ .+++.
T Consensus       188 ~~~~plHlaakngh~~~~~~ll~ag-~din~  217 (854)
T KOG0507|consen  188 PAIYPLHLAAKNGHVECMQALLEAG-FDINY  217 (854)
T ss_pred             CCcCCcchhhhcchHHHHHHHHhcC-CCccc
Confidence            6677888888888888888777664 44443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=2.9e-19  Score=144.22  Aligned_cols=143  Identities=14%  Similarity=0.054  Sum_probs=128.5

Q ss_pred             cHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHH
Q 042244           53 MTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPV  132 (368)
Q Consensus        53 tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpL  132 (368)
                      -.+.+|+..+.        ..-|+.||+.. +..++.+|.+|.||||-|+..|+.++++.|+..+.+. +.+.+.|+|||
T Consensus        65 rl~lwaae~nr--------l~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPL  134 (228)
T KOG0512|consen   65 RLLLWAAEKNR--------LTEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPL  134 (228)
T ss_pred             HHHHHHHhhcc--------HHHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccch
Confidence            45789999999        99999999998 8889999999999999999999999999999998765 88899999999


Q ss_pred             HHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCch-HHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          133 IQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLY-DVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       133 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      |.||...+.+++-.|++++++.+. ..+...||||+|+...+. ..+++|+.........+++.+.||+++|.+.
T Consensus       135 hSAckWnN~~va~~LLqhgaDVnA-~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  135 HSACKWNNFEVAGRLLQHGADVNA-QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             hhhhcccchhHHHHHHhccCcccc-cccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            999999999999999999999987 888889999999887765 4566777665567888899999999998775

>PHA02730 ankyrin-like protein; Provisional

Probab=99.81  E-value=6.9e-19  Score=174.29  Aligned_cols=142  Identities=14%  Similarity=0.141  Sum_probs=118.3

Q ss_pred             HHHHHHHcCC-cccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCC----HHHHHHHHhhCCC-CccccCCC
Q 042244           54 TIFHAIVELW-VDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGN----LRALKVLVKYNPD-LTNKRDTL  127 (368)
Q Consensus        54 pLh~A~~~g~-~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~----~~~v~~Ll~~~~~-~~~~~d~~  127 (368)
                      .||.-.+.++ ++      .++++.|++++  ++++.. ..|+||||+|+..++    .+++++|++++.+ .++.+|.+
T Consensus       346 ~l~~Y~~~~~~v~------ieIvelLIs~G--AdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~  416 (672)
T PHA02730        346 MLINYLHYGDMVS------IPILRCMLDNG--ATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNN  416 (672)
T ss_pred             HHHHHHhcCCcCc------HHHHHHHHHCC--CCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccC
Confidence            5666666552 22      89999999999  777764 789999999998875    8999999999863 35888999


Q ss_pred             CCcHHHH---HHhhC---------CHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCC-
Q 042244          128 DSLPVIQ---AAYHG---------HKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNID-  194 (368)
Q Consensus       128 G~tpLh~---Aa~~g---------~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~-  194 (368)
                      |+||||.   |...+         ..+++++|++++++.+. +|..|+||||.|+..++.++++.|++.+ +..+.+|+ 
T Consensus       417 G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINa-kD~~G~TPLh~Aa~~~~~eive~LI~~G-AdIN~~d~~  494 (672)
T PHA02730        417 GRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDM-IDNENKTLLYYAVDVNNIQFARRLLEYG-ASVNTTSRS  494 (672)
T ss_pred             CCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhc-cCCCCCCHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCc
Confidence            9999994   33332         23579999999999887 9999999999999999999999999887 88999997 


Q ss_pred             CCCcHHHHHhcC
Q 042244          195 SRRIVLNALAEK  206 (368)
Q Consensus       195 ~g~Tpl~l~~~~  206 (368)
                      .|.||+|.++..
T Consensus       495 ~g~TaL~~Aa~~  506 (672)
T PHA02730        495 IINTAIQKSSYR  506 (672)
T ss_pred             CCcCHHHHHHHh
Confidence            599999998763

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=2e-19  Score=150.21  Aligned_cols=131  Identities=11%  Similarity=0.047  Sum_probs=106.9

Q ss_pred             cccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcC---CchhhhchhcCCCcHHHHHHHcCCH---HHHHHHHhhCC
Q 042244           45 AKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKV---DPQTLEQRDDIGYTALYQCAVKGNL---RALKVLVKYNP  118 (368)
Q Consensus        45 ~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~---~p~~~~~~d~~G~tpLh~A~~~g~~---~~v~~Ll~~~~  118 (368)
                      ...|.+|.||||+||+.|+        .+.+.......   .+.....+|.+|+||||+|+..|+.   +++++|++.+.
T Consensus        11 ~~~d~~g~tpLh~A~~~g~--------~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga   82 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGG--------VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA   82 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCC--------HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC
Confidence            3458889999999999999        53222111111   0234567899999999999999986   46889999987


Q ss_pred             CCccccC-CCCCcHHHHHHhhCCHHHHHHHHhh-CCCCccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          119 DLTNKRD-TLDSLPVIQAAYHGHKDTFQYLREV-THGVDIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       119 ~~~~~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      ++ +.+| .+|+||||+|+..++.+++++|++. +.+.+. +|..|+||||+|+..++.++++.|++.+
T Consensus        83 di-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~-~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         83 DI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI-LNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             Cc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc-ccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            65 7777 5899999999999999999999975 677765 9999999999999999999999999876

>PHA02792 ankyrin-like protein; Provisional

Probab=99.80  E-value=1.1e-18  Score=171.05  Aligned_cols=185  Identities=8%  Similarity=0.001  Sum_probs=150.2

Q ss_pred             hhccCChHHHHHHHhC-------CHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCC--ccccc--------------
Q 042244           12 EYCARYWPLYRMIEKN-------DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELW--VDVES--------------   68 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G-------~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~--~~~~~--------------   68 (368)
                      ++..|.||||.|+..+       +.|+++.|++++.+..  ..|..|.||||+|+...+  .|+++              
T Consensus       171 ~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~--~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~  248 (631)
T PHA02792        171 DDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR--YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMN  248 (631)
T ss_pred             CCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC--ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHh
Confidence            3556999999999999       8999999999965552  337789999999999993  34440              


Q ss_pred             -------------C--------------------------------------------------------ChHHHHHHHH
Q 042244           69 -------------D--------------------------------------------------------DATCLLDKLA   79 (368)
Q Consensus        69 -------------~--------------------------------------------------------~~~~~v~~Ll   79 (368)
                                   +                                                        -+.++++.|+
T Consensus       249 ~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LI  328 (631)
T PHA02792        249 ILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMI  328 (631)
T ss_pred             HHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHH
Confidence                         0                                                        1356666666


Q ss_pred             hcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCC--CcHHHHHHhhCCH---HHHHHHHhhCCCC
Q 042244           80 SKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLD--SLPVIQAAYHGHK---DTFQYLREVTHGV  154 (368)
Q Consensus        80 ~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G--~tpLh~Aa~~g~~---~~v~~Ll~~~~~~  154 (368)
                      +.+  ....  ...+..++|.|+..|+.+++++|+++|++. +.+|.+|  .||||.|+.....   ++++++++.+++.
T Consensus       329 d~G--a~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI  403 (631)
T PHA02792        329 DEG--ATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI  403 (631)
T ss_pred             HCC--Cccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc
Confidence            666  3221  223567799999999999999999999875 7777775  6999998776654   4578889999998


Q ss_pred             ccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhc
Q 042244          155 DIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAE  205 (368)
Q Consensus       155 ~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~  205 (368)
                      +. +|.+|.||||.|+..++.++++.|++.+ .+.+.+|..|+||+|+|..
T Consensus       404 N~-kD~~G~TPLh~Aa~~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        404 NK-IDKHGRSILYYCIESHSVSLVEWLIDNG-ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             cc-ccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHH
Confidence            87 9999999999999999999999999986 8899999999999999865

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.80  E-value=6.2e-20  Score=153.43  Aligned_cols=186  Identities=18%  Similarity=0.129  Sum_probs=148.8

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCccccc------------------------
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVES------------------------   68 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~------------------------   68 (368)
                      +..|...+-.+.+.|+.+.++....-+|+.. ...+++|++.+|.|+-.|+.+.++                        
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~-~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsV  137 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAI-DETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSV  137 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCC-CCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHH
Confidence            4445555666777777777777766666665 444666777777777777655551                        


Q ss_pred             -CChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHH
Q 042244           69 -DDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL  147 (368)
Q Consensus        69 -~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~L  147 (368)
                       +-+.+.+.++.+    ..++..|+.|.|||.+|+..|++.+|++|++.+.+. ....+...++|.+|++.|..++++.|
T Consensus       138 hql~L~~~~~~~~----n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lL  212 (296)
T KOG0502|consen  138 HQLHLDVVDLLVN----NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELL  212 (296)
T ss_pred             HHHHHHHHHHHhh----ccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHH
Confidence             011444444443    347889999999999999999999999999998775 67777888999999999999999999


Q ss_pred             HhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          148 REVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       148 l~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      +.++.+.+. -|-+|-|||-+|++.++.++++.|+..+ ++.+..+..|.+++++|+..
T Consensus       213 L~r~vdVNv-yDwNGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAVal  269 (296)
T KOG0502|consen  213 LTREVDVNV-YDWNGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWIMDLAVAL  269 (296)
T ss_pred             HhcCCCcce-eccCCCceeeeeecCChHHHHHHHHhcC-CCcccccccCCcHHHHHHHh
Confidence            999999987 8999999999999999999999999987 88888899999999998764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=1.7e-18  Score=139.73  Aligned_cols=144  Identities=15%  Similarity=0.111  Sum_probs=126.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHH
Q 042244           19 PLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTAL   98 (368)
Q Consensus        19 ~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpL   98 (368)
                      .+..|+..+..+.|+.||+..++.+ ...|.+|.||||-|+++||        .+||+.|+..+  +..+.+...|+|||
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~v-NtrD~D~YTpLHRAaYn~h--------~div~~ll~~g--An~~a~T~~GWTPL  134 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHV-NTRDEDEYTPLHRAAYNGH--------LDIVHELLLSG--ANKEAKTNEGWTPL  134 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccc-cccccccccHHHHHHhcCc--------hHHHHHHHHcc--CCcccccccCccch
Confidence            4578999999999999999999998 6669999999999999999        99999999998  88999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCH-HHHHHHHhhC-CCCccccCCCCchHHHHHHHhCch
Q 042244           99 YQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHK-DTFQYLREVT-HGVDIYSGNDGANMLSRLIDATLY  175 (368)
Q Consensus        99 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~-~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~a~~~~~~  175 (368)
                      |-||.-.+.+++..|++.+.++ +...+...||||+||...+. ..+++|+... -.+. .+++.++||+.+|-+.+-.
T Consensus       135 hSAckWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg-~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  135 HSACKWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG-LKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             hhhhcccchhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChh-hhcCccchHHHHHHHhhhh
Confidence            9999999999999999999887 88888889999999987754 5566666543 3334 4889999999999887644

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=7.3e-18  Score=165.06  Aligned_cols=160  Identities=14%  Similarity=0.080  Sum_probs=138.6

Q ss_pred             hccCChHHHHHHH---hCCHHHHHHHHHcCCcccccccC---CCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchh
Q 042244           13 YCARYWPLYRMIE---KNDWRGVEDFVTNDPDALTAKTI---APGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQT   86 (368)
Q Consensus        13 ~~~g~t~Lh~A~~---~G~~~~v~~Ll~~~p~~~~~~~~---~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~   86 (368)
                      -.-|.|.||.|..   .++.+.+..|++..|+.+++...   -.|.||||+|+.+.+        .++|+.|++.+  ++
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~--------~~~V~lLl~~g--AD  209 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRD--------AELVRLLLAAG--AD  209 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhcc--------HHHHHHHHHcC--Cc
Confidence            4558899999987   45679999999999987644332   259999999999999        99999999998  44


Q ss_pred             hhch---------h--------------cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHH
Q 042244           87 LEQR---------D--------------DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDT  143 (368)
Q Consensus        87 ~~~~---------d--------------~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~  143 (368)
                      ++.+         |              --|..||.+||..++.+++++|++++.+. +.+|.+|+|.||..+.+-..++
T Consensus       210 V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~M  288 (782)
T KOG3676|consen  210 VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEM  288 (782)
T ss_pred             hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHH
Confidence            3221         1              13789999999999999999999988775 9999999999999999999999


Q ss_pred             HHHHHhhCCC--CccccCCCCchHHHHHHHhCchHHHHHHHHh
Q 042244          144 FQYLREVTHG--VDIYSGNDGANMLSRLIDATLYDVALDLLKL  184 (368)
Q Consensus       144 v~~Ll~~~~~--~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~  184 (368)
                      ..++++.++.  ... +|+.|-|||.+|++.|+.++.+.++++
T Consensus       289 y~~~L~~ga~~l~~v-~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  289 YDLALELGANALEHV-RNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHhcCCCccccc-cccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999998  555 999999999999999999999999988

>PF13962 PGG: Domain of unknown function

Probab=99.79  E-value=7.3e-19  Score=138.19  Aligned_cols=92  Identities=40%  Similarity=0.611  Sum_probs=80.2

Q ss_pred             HHHHH-HhhhhccCCCCCCC----CCcccccCcc-chhHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhhhHHHH
Q 042244          221 RLIYN-LFAAAFTVPGGSDS----RGIPNLLHEK-SFMIFAISDMLALFSSTTSVLMFLGILSSRYAEDDFLVSLPRKLI  294 (368)
Q Consensus       221 rLiat-tFaa~~t~PGG~~~----~G~~~~~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  294 (368)
                      .|||| ||+|++|||||++|    .|+|++.+++ .|++|+++|++||++|+++++++++.+      +++.+..++.+.
T Consensus        16 tLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~------~~~~~~~~~~~~   89 (113)
T PF13962_consen   16 TLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL------DDFRRFLRRYLL   89 (113)
T ss_pred             HHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHH
Confidence            38888 99999999999966    5999999888 999999999999999999999887322      444555566788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 042244          295 IGLVALFFSIASMMVAFGATVHIS  318 (368)
Q Consensus       295 ~~~~~l~~s~~~m~~af~~~~~~v  318 (368)
                      ++..++++++.+|++||++|+|+|
T Consensus        90 ~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   90 IASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC
Confidence            899999999999999999999875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=4.4e-19  Score=158.50  Aligned_cols=169  Identities=19%  Similarity=0.198  Sum_probs=143.7

Q ss_pred             CCHHHHHHHHHc----CCccc---ccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHH
Q 042244           27 NDWRGVEDFVTN----DPDAL---TAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALY   99 (368)
Q Consensus        27 G~~~~v~~Ll~~----~p~~~---~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh   99 (368)
                      -+.+.|...+..    .|.++   .+..|.+|.|+||+|+..++        .++|+.||+.+ -.+++.+|+.|+||+.
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaN--------F~VV~~LLDSg-vC~VD~qNrAGYtpiM  307 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHAN--------FDVVSILLDSG-VCDVDQQNRAGYTPVM  307 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccc--------hHHHHHHhccC-cccccccccccccHHH
Confidence            356777666654    33321   24458999999999999999        99999999998 6779999999999999


Q ss_pred             HHHHc-----CCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCc
Q 042244          100 QCAVK-----GNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATL  174 (368)
Q Consensus       100 ~A~~~-----g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~  174 (368)
                      +++..     .+.++|..|.+.+ ++.-.....|+|+|++|+.+|+.++++.||..+++.+. +|.+|.|+|..|+++|+
T Consensus       308 LaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNi-QDdDGSTALMCA~EHGh  385 (452)
T KOG0514|consen  308 LAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNI-QDDDGSTALMCAAEHGH  385 (452)
T ss_pred             HHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCcc-ccCCccHHHhhhhhhCh
Confidence            98754     3477888888876 33223456799999999999999999999999999998 99999999999999999


Q ss_pred             hHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          175 YDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       175 ~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      .|+++.||.....+....|.+|-|+|.+|.+.
T Consensus       386 kEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  386 KEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             HHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            99999999888789999999999999998765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=4.4e-18  Score=155.13  Aligned_cols=149  Identities=16%  Similarity=0.083  Sum_probs=120.9

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCcccccc---cCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch-h
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDALTAK---TIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR-D   91 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~---~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~-d   91 (368)
                      ..++||.|++.|+.++++.|++.+.+.- ..   .+..|.||||+|+..|+        .++++.|++++  ++++.+ +
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN-~~~~~sd~~g~TpLh~Aa~~~~--------~eivklLL~~G--ADVN~~~~  101 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGADPE-APFPLSENSKTNPLIYAIDCDN--------DDAAKLLIRYG--ADVNRYAE  101 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCCcc-ccCcccCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCcCcccC
Confidence            3457788888899999999999876542 22   14589999999999999        99999999998  778876 4


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      ..|.||||.|+..|+.+++++|++.+.+. +.+|.+|.||||+|++.++.+++..+...      ..+..+.+|++.+  
T Consensus       102 ~~g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--  172 (300)
T PHA02884        102 EAKITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL--  172 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh--
Confidence            57999999999999999999999998765 88999999999999999988877555422      1456677888764  


Q ss_pred             hCchHHHHHHHHhC
Q 042244          172 ATLYDVALDLLKLY  185 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~  185 (368)
                       ++.|+++.|+++.
T Consensus       173 -~n~ei~~~Lish~  185 (300)
T PHA02884        173 -INFDILKILVSHF  185 (300)
T ss_pred             -ccHHHHHHHHHHH
Confidence             4678888888765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.78  E-value=8.2e-19  Score=169.73  Aligned_cols=181  Identities=17%  Similarity=0.071  Sum_probs=158.1

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      +..|.+|||+|++.|+.|.++.++.++ +.. ...+.+|+||||.||+.||        .+++.+|++++  +++-.+|.
T Consensus        79 d~kg~~plhlaaw~g~~e~vkmll~q~-d~~-na~~~e~~tplhlaaqhgh--------~dvv~~Ll~~~--adp~i~nn  146 (854)
T KOG0507|consen   79 DTKGILPLHLAAWNGNLEIVKMLLLQT-DIL-NAVNIENETPLHLAAQHGH--------LEVVFYLLKKN--ADPFIRNN  146 (854)
T ss_pred             hccCcceEEehhhcCcchHHHHHHhcc-cCC-CcccccCcCccchhhhhcc--------hHHHHHHHhcC--CCccccCc
Confidence            367999999999999999999999886 333 4458899999999999999        99999999998  88899999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCC-------CccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchH
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPD-------LTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANM  165 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~-------~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  165 (368)
                      .+.|+|-+|++.|+.++++.|+...-.       ....++..+.+|||+|+++||.++++.|++.+-+.+. ..++| |+
T Consensus       147 s~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~-~t~~g-ta  224 (854)
T KOG0507|consen  147 SKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINY-TTEDG-TA  224 (854)
T ss_pred             ccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccc-ccccc-hh
Confidence            999999999999999999999987211       0134556788999999999999999999999998875 54554 89


Q ss_pred             HHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCCC
Q 042244          166 LSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPY  208 (368)
Q Consensus       166 Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~~  208 (368)
                      ||-|+..|..+++..|++.+ ....++|.+|+|+|++...-++
T Consensus       225 lheaalcgk~evvr~ll~~g-in~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  225 LHEAALCGKAEVVRFLLEIG-INTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             hhhHhhcCcchhhhHHHhhc-cccccccccchHHHHHHHhcch
Confidence            99999999999999999987 8899999999999998766543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=1.2e-18  Score=163.13  Aligned_cols=173  Identities=16%  Similarity=0.136  Sum_probs=128.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHH
Q 042244           19 PLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTAL   98 (368)
Q Consensus        19 ~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpL   98 (368)
                      .+..|+..|+.+.+..++....+.  ...|.+|.|+||-+|.-.+        .+||++|++.+  +.++..|..|||||
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~--~~~n~DglTalhq~~id~~--------~e~v~~l~e~g--a~Vn~~d~e~wtPl  110 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP--NLCNVDGLTALHQACIDDN--------LEMVKFLVENG--ANVNAQDNEGWTPL  110 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc--cccCCccchhHHHHHhccc--------HHHHHHHHHhc--CCccccccccCCcc
Confidence            355566666666666666653222  2336666666666666666        66666666666  56666666666666


Q ss_pred             HHHHHcCCHHHHHHHHhhCC----------------------------------------------------------CC
Q 042244           99 YQCAVKGNLRALKVLVKYNP----------------------------------------------------------DL  120 (368)
Q Consensus        99 h~A~~~g~~~~v~~Ll~~~~----------------------------------------------------------~~  120 (368)
                      |.|+.-|+..++++|+..+.                                                          ..
T Consensus       111 haaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~  190 (527)
T KOG0505|consen  111 HAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE  190 (527)
T ss_pred             hhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc
Confidence            66666666666666665221                                                          12


Q ss_pred             ccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHH
Q 042244          121 TNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVL  200 (368)
Q Consensus       121 ~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl  200 (368)
                      ...++..|-|.||.|+.+|..++.+.|++.+.+... +|.+|+||||.|+.-|..+.++.|++++ ...+.++..|.||+
T Consensus       191 ~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~-~D~dgWtPlHAAA~Wg~~~~~elL~~~g-a~~d~~t~~g~~p~  268 (527)
T KOG0505|consen  191 LDARHARGATALHVAAANGYTEVAALLLQAGYSVNI-KDYDGWTPLHAAAHWGQEDACELLVEHG-ADMDAKTKMGETPL  268 (527)
T ss_pred             ccccccccchHHHHHHhhhHHHHHHHHHHhccCccc-ccccCCCcccHHHHhhhHhHHHHHHHhh-cccchhhhcCCCCc
Confidence            355666699999999999999999999999999887 9999999999999999999999888776 88899999999999


Q ss_pred             HHHhc
Q 042244          201 NALAE  205 (368)
Q Consensus       201 ~l~~~  205 (368)
                      +++.+
T Consensus       269 dv~de  273 (527)
T KOG0505|consen  269 DVADE  273 (527)
T ss_pred             cchhh
Confidence            98755

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=1.2e-17  Score=152.39  Aligned_cols=137  Identities=15%  Similarity=0.129  Sum_probs=115.5

Q ss_pred             CCCCCc-HHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch----hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCcc
Q 042244           48 IAPGSM-TIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR----DDIGYTALYQCAVKGNLRALKVLVKYNPDLTN  122 (368)
Q Consensus        48 ~~~g~t-pLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~----d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  122 (368)
                      |..|.| +||.|+..|+        .++++.|+++|  ++++.+    |..|.||||+|+..|+.+++++|+++++++ +
T Consensus        29 d~~~~~~lL~~A~~~~~--------~eivk~LL~~G--AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N   97 (300)
T PHA02884         29 NKICIANILYSSIKFHY--------TDIIDAILKLG--ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-N   97 (300)
T ss_pred             CcCCCCHHHHHHHHcCC--------HHHHHHHHHCC--CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-C
Confidence            666665 6777788899        99999999999  677776    468999999999999999999999999876 6


Q ss_pred             cc-CCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHH
Q 042244          123 KR-DTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLN  201 (368)
Q Consensus       123 ~~-d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~  201 (368)
                      .+ +..|.||||.|+.+++.+++++|++.+++.+. +|.+|.||||.|++.++.+++..+..      ...+..+.+|.+
T Consensus        98 ~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~-kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~  170 (300)
T PHA02884         98 RYAEEAKITPLYISVLHGCLKCLEILLSYGADINI-QTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKK  170 (300)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhh
Confidence            64 56899999999999999999999999999887 99999999999999888887754432      124556667776


Q ss_pred             H
Q 042244          202 A  202 (368)
Q Consensus       202 l  202 (368)
                      .
T Consensus       171 ~  171 (300)
T PHA02884        171 I  171 (300)
T ss_pred             h
Confidence            4

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=8.2e-19  Score=152.33  Aligned_cols=128  Identities=20%  Similarity=0.198  Sum_probs=114.5

Q ss_pred             HHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhC
Q 042244           72 TCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVT  151 (368)
Q Consensus        72 ~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~  151 (368)
                      .--|+..|+.. ..+.+.-|+.|.+|||+||+.|+..+++.|+.++..+ +..|....||||+|+.+||.++++.|+++.
T Consensus        13 a~qvrlwld~t-ehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~k   90 (448)
T KOG0195|consen   13 AFQVRLWLDDT-EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRK   90 (448)
T ss_pred             eEEEEEEecCc-ccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHh
Confidence            44455555554 4568899999999999999999999999999999665 788888899999999999999999999999


Q ss_pred             CCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHH
Q 042244          152 HGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNAL  203 (368)
Q Consensus       152 ~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~  203 (368)
                      ++.+. .|..|+||||+|+--|...+++.|+..+ +..+..|++|.||++.+
T Consensus        91 advna-vnehgntplhyacfwgydqiaedli~~g-a~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   91 ADVNA-VNEHGNTPLHYACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKA  140 (448)
T ss_pred             cccch-hhccCCCchhhhhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhh
Confidence            99987 9999999999999999999999999987 88999999999999965

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=1.6e-18  Score=150.59  Aligned_cols=136  Identities=16%  Similarity=0.158  Sum_probs=116.8

Q ss_pred             HHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHH
Q 042244           22 RMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQC  101 (368)
Q Consensus        22 ~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A  101 (368)
                      .=++.|+.-.|...|+...... ..-|+.|.+|||+||+.||        ..+++.|+.++  +-++..+....||||+|
T Consensus         6 ~wcregna~qvrlwld~tehdl-n~gddhgfsplhwaakegh--------~aivemll~rg--arvn~tnmgddtplhla   74 (448)
T KOG0195|consen    6 GWCREGNAFQVRLWLDDTEHDL-NVGDDHGFSPLHWAAKEGH--------VAIVEMLLSRG--ARVNSTNMGDDTPLHLA   74 (448)
T ss_pred             hhhhcCCeEEEEEEecCccccc-ccccccCcchhhhhhhccc--------HHHHHHHHhcc--cccccccCCCCcchhhh
Confidence            3356666555555565543334 4558899999999999999        99999999999  77888888888999999


Q ss_pred             HHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244          102 AVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus       102 ~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      +.+|+.++|+.|+++..++ +..|..|+||||+||..|..++.+-|+..++.... .|++|.|||..|-
T Consensus        75 aahghrdivqkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~v~i-cnk~g~tpldkak  141 (448)
T KOG0195|consen   75 AAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNI-CNKKGMTPLDKAK  141 (448)
T ss_pred             hhcccHHHHHHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccceeee-cccCCCCchhhhc
Confidence            9999999999999988776 99999999999999999999999999999998887 9999999999763

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=2.1e-16  Score=154.98  Aligned_cols=182  Identities=15%  Similarity=0.155  Sum_probs=148.1

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCC--------cccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDP--------DALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p--------~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      .++..|...|..+....++....        ... ......|+|.||.|..+.+     |++.++++.|++.. |..++.
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~-~~RGa~GET~Lh~~lL~~~-----~~~n~la~~LL~~~-p~lind  175 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKL-NERGATGETLLHKALLNLS-----DGHNELARVLLEIF-PKLIND  175 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhcc-ccccchhhhHHHHHHhcCc-----hhHHHHHHHHHHHh-HHHhhh
Confidence            77888989998888887776532        122 2235679999999998766     55589999999998 765443


Q ss_pred             h----hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCc-----------cccCC-----------CCCcHHHHHHhhCCHHH
Q 042244           90 R----DDIGYTALYQCAVKGNLRALKVLVKYNPDLT-----------NKRDT-----------LDSLPVIQAAYHGHKDT  143 (368)
Q Consensus        90 ~----d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~-----------~~~d~-----------~G~tpLh~Aa~~g~~~~  143 (368)
                      .    .-.|.||||+|+.+.+.++|++|++.++|+.           +.+..           .|+.||.+||.-++.|+
T Consensus       176 ~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~ei  255 (782)
T KOG3676|consen  176 IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEI  255 (782)
T ss_pred             hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHH
Confidence            2    2359999999999999999999999876641           11111           37899999999999999


Q ss_pred             HHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCc-ccccCCCCCCcHHHHHhcCC
Q 042244          144 FQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPT-IGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       144 v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      +++|++++++.+. +|.+|||.||..+..-..++...+++.+.. +...+|++|.|||.+|++..
T Consensus       256 vrlLl~~gAd~~a-qDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  256 VRLLLAHGADPNA-QDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             HHHHHhcCCCCCc-cccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence            9999999999997 999999999999999888999999988732 47889999999999998753

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=5.7e-16  Score=123.27  Aligned_cols=124  Identities=23%  Similarity=0.253  Sum_probs=111.0

Q ss_pred             cCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           47 TIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        47 ~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      .|.+|.||||.|+..|+        .++++.|++.+  ......|..|.+|+|.|+..++.++++.|++.++.. +..+.
T Consensus         3 ~~~~g~t~l~~a~~~~~--------~~~i~~li~~~--~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~   71 (126)
T cd00204           3 RDEDGRTPLHLAASNGH--------LEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDK   71 (126)
T ss_pred             cCcCCCCHHHHHHHcCc--------HHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCC
Confidence            36789999999999999        99999999998  445788899999999999999999999999998643 77888


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHH
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLL  182 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll  182 (368)
                      .|.||+|+|+..++.+++++|++.+.+... .+..|.||++.|...++.++++.|+
T Consensus        72 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          72 DGNTPLHLAARNGNLDVVKLLLKHGADVNA-RDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999999999998866665 8899999999999999998887763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.68  E-value=1.4e-16  Score=149.48  Aligned_cols=151  Identities=19%  Similarity=0.144  Sum_probs=129.1

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCC------
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVD------   83 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~------   83 (368)
                      .-.+.+|+|+||.++...|.++|+++++.+.++  ...|.+|+||||.|+..||.+++        +.|++++.      
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V--n~~d~e~wtPlhaaascg~~~i~--------~~li~~gA~~~avN  136 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANV--NAQDNEGWTPLHAAASCGYLNIV--------EYLIQHGANLLAVN  136 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCc--cccccccCCcchhhcccccHHHH--------HHHHHhhhhhhhcc
Confidence            456788999999999999999999999998776  45599999999999999995555        33333320      


Q ss_pred             ---------------------------------------------------chhhhchhcCCCcHHHHHHHcCCHHHHHH
Q 042244           84 ---------------------------------------------------PQTLEQRDDIGYTALYQCAVKGNLRALKV  112 (368)
Q Consensus        84 ---------------------------------------------------p~~~~~~d~~G~tpLh~A~~~g~~~~v~~  112 (368)
                                                                         ....+..+..|-|.||+|+..|-.++.++
T Consensus       137 sdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~l  216 (527)
T KOG0505|consen  137 SDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAAL  216 (527)
T ss_pred             CCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHH
Confidence                                                               02345556669999999999999999999


Q ss_pred             HHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh
Q 042244          113 LVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus       113 Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      |++.+.++ +.+|.+|+||||.|+..|+.++++.|++++++... .+..|+||+.+|...
T Consensus       217 Ll~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~-~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  217 LLQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA-KTKMGETPLDVADEE  274 (527)
T ss_pred             HHHhccCc-ccccccCCCcccHHHHhhhHhHHHHHHHhhcccch-hhhcCCCCccchhhh
Confidence            99998766 89999999999999999999999999999999886 899999999998764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.66  E-value=1.9e-15  Score=120.19  Aligned_cols=123  Identities=25%  Similarity=0.246  Sum_probs=110.3

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      +..|.||||.|++.|+.+.++.+++..+..  ...+..|.||+|.|+..++        .++++.|++.+  ...+..|.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~--------~~~~~~ll~~~--~~~~~~~~   71 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGH--------LEIVKLLLEKG--ADVNARDK   71 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCC--------HHHHHHHHHcC--CCccccCC
Confidence            367999999999999999999999987664  3448899999999999999        99999999998  56788889


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHH
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR  148 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll  148 (368)
                      .|.||+|.|+..++.+++++|++++.+. +..|..|.||+|.|...++.+++++|+
T Consensus        72 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          72 DGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999987544 678899999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=8.8e-16  Score=115.65  Aligned_cols=87  Identities=28%  Similarity=0.284  Sum_probs=66.6

Q ss_pred             HHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHH
Q 042244           55 IFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQ  134 (368)
Q Consensus        55 Lh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~  134 (368)
                      ||+||+.|+        .++++.|++.+  ..++.    |+||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+
T Consensus         1 L~~A~~~~~--------~~~~~~ll~~~--~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~   65 (89)
T PF12796_consen    1 LHIAAQNGN--------LEILKFLLEKG--ADINL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHY   65 (89)
T ss_dssp             HHHHHHTTT--------HHHHHHHHHTT--STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHH
T ss_pred             CHHHHHcCC--------HHHHHHHHHCc--CCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHH
Confidence            688888888        88888888866  33333    778888888888888888888887665 7777888888888


Q ss_pred             HHhhCCHHHHHHHHhhCCCCcc
Q 042244          135 AAYHGHKDTFQYLREVTHGVDI  156 (368)
Q Consensus       135 Aa~~g~~~~v~~Ll~~~~~~~~  156 (368)
                      |+.+|+.+++++|++++.+.+.
T Consensus        66 A~~~~~~~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   66 AAENGNLEIVKLLLEHGADVNI   87 (89)
T ss_dssp             HHHTTHHHHHHHHHHTTT-TTS
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC
Confidence            8888888888888888776543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.64  E-value=1.7e-15  Score=114.13  Aligned_cols=85  Identities=20%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHH
Q 042244           20 LYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALY   99 (368)
Q Consensus        20 Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh   99 (368)
                      ||.|++.|+.++++.|++..++..     . |+||||+|+..|+        .++++.|++.+  ..++.+|.+|+||||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~-----~-~~~~l~~A~~~~~--------~~~~~~Ll~~g--~~~~~~~~~g~t~L~   64 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN-----L-GNTALHYAAENGN--------LEIVKLLLENG--ADINSQDKNGNTALH   64 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT-----S-SSBHHHHHHHTTT--------HHHHHHHHHTT--TCTT-BSTTSSBHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC-----C-CCCHHHHHHHcCC--------HHHHHHHHHhc--ccccccCCCCCCHHH
Confidence            799999999999999999776543     2 8999999999999        99999999998  778999999999999


Q ss_pred             HHHHcCCHHHHHHHHhhCCCC
Q 042244          100 QCAVKGNLRALKVLVKYNPDL  120 (368)
Q Consensus       100 ~A~~~g~~~~v~~Ll~~~~~~  120 (368)
                      +|+..|+.+++++|++++.+.
T Consensus        65 ~A~~~~~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   65 YAAENGNLEIVKLLLEHGADV   85 (89)
T ss_dssp             HHHHTTHHHHHHHHHHTTT-T
T ss_pred             HHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999998664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02792 ankyrin-like protein; Provisional

Probab=99.60  E-value=2e-14  Score=141.42  Aligned_cols=154  Identities=12%  Similarity=0.070  Sum_probs=126.8

Q ss_pred             hHHHHHHHhC--CHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCC-
Q 042244           18 WPLYRMIEKN--DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIG-   94 (368)
Q Consensus        18 t~Lh~A~~~G--~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G-   94 (368)
                      .-||.-...+  +.+.++.+++.+-+..    ...+...+|.||..|+        .++++.|++++  ++++.+|.+| 
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~----r~~~~n~~~~Aa~~gn--------~eIVelLIs~G--ADIN~kD~~g~  373 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLY----RFKHINKYFQKFDNRD--------PKVVEYILKNG--NVVVEDDDNII  373 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCccc----cCCcchHHHHHHHcCC--------HHHHHHHHHcC--CchhhhcCCCC
Confidence            4577777777  6899999999876543    2335667999999999        99999999999  7788888875 


Q ss_pred             -CcHHHHHHHcCCH---HHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244           95 -YTALYQCAVKGNL---RALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus        95 -~tpLh~A~~~g~~---~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                       .||||.|+.....   +++++|++.+++. +.+|..|+||||.|+..++.+++++|++++++.+. +|..|+||||.|+
T Consensus       374 ~~TpLh~A~~n~~~~v~~IlklLIs~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~-kD~~G~TpL~~A~  451 (631)
T PHA02792        374 NIMPLFPTLSIHESDVLSILKLCKPYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI-TTKYGSTCIGICV  451 (631)
T ss_pred             ChhHHHHHHHhccHhHHHHHHHHHhcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHH
Confidence             6999998876654   4678889988775 89999999999999999999999999999999886 9999999999987


Q ss_pred             H---hC-------chHHHHHHHHhCCc
Q 042244          171 D---AT-------LYDVALDLLKLYPT  187 (368)
Q Consensus       171 ~---~~-------~~~~~~~Ll~~~~~  187 (368)
                      .   .+       ..++++.++++++.
T Consensus       452 ~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        452 ILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            5   22       24557777777643

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=5e-14  Score=123.88  Aligned_cols=129  Identities=21%  Similarity=0.214  Sum_probs=119.5

Q ss_pred             ccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCC-----HHHHHHHHhhCC--
Q 042244           46 KTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGN-----LRALKVLVKYNP--  118 (368)
Q Consensus        46 ~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~-----~~~v~~Ll~~~~--  118 (368)
                      ..+..+.+++|.++..+.        .++++.++..+  ..++.+|..|.||||+|+..|+     .++++.|++.+.  
T Consensus        68 ~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~  137 (235)
T COG0666          68 ARDLDGRLPLHSAASKGD--------DKIVKLLLASG--ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL  137 (235)
T ss_pred             cCCccccCHHHHHHHcCc--------HHHHHHHHHcC--CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCC
Confidence            346678999999999999        99999999998  6669999999999999999999     999999999998  


Q ss_pred             CCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          119 DLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       119 ~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      +..+.+|.+|+||||+|+..|+.++++.+++.+++... .+..|.|+++.|...++.+++..+++.+
T Consensus       138 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         138 DVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS-RNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcc-cccCCCcchhhhcccchHHHHHHHHhcC
Confidence            67788899999999999999999999999999998886 8999999999999999999999888864

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.51  E-value=9.4e-15  Score=146.17  Aligned_cols=180  Identities=14%  Similarity=0.092  Sum_probs=97.7

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      ..+-.|+|-.|+..||.|.++.|+.++.+.  +..|+.|.+||-+|+..||        ..+|+.|+++. -+.-...|+
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rgani--ehrdkkgf~plImaatagh--------~tvV~~llk~h-a~veaQsdr  822 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANI--EHRDKKGFVPLIMAATAGH--------ITVVQDLLKAH-ADVEAQSDR  822 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccc--cccccccchhhhhhcccCc--------hHHHHHHHhhh-hhhhhhccc
Confidence            344556777777777777777777665554  3346677777777777777        55555555554 222223344


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCC-----------------------------------CCcHHHHHHh
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTL-----------------------------------DSLPVIQAAY  137 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-----------------------------------G~tpLh~Aa~  137 (368)
                      .+.|+|.+||..|+.+++++|+..+..- ..++-.                                   |-.||++|..
T Consensus       823 tkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatm  901 (2131)
T KOG4369|consen  823 TKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATM  901 (2131)
T ss_pred             ccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhh
Confidence            5555555555555555555555544322 333344                                   4455555555


Q ss_pred             hCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhc
Q 042244          138 HGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAE  205 (368)
Q Consensus       138 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~  205 (368)
                      +||.+..+.|++.+.+.+.....+-+|+|.+|+-.|+.+++..||... .+...+-+.|.|||.-++.
T Consensus       902 ngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~-anvehRaktgltplme~As  968 (2131)
T KOG4369|consen  902 NGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ-ANVEHRAKTGLTPLMEMAS  968 (2131)
T ss_pred             ccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHh-hhhhhhcccCCcccchhhc
Confidence            555555555555554444333444455555555555555555555443 4455555556666654433

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.46  E-value=4.3e-14  Score=141.51  Aligned_cols=189  Identities=13%  Similarity=0.056  Sum_probs=125.4

Q ss_pred             CCccchhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCc
Q 042244            5 SDDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDP   84 (368)
Q Consensus         5 ~~~~~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p   84 (368)
                      ..-+++.++.+.+|||-.|...|..+++..|+..+.++-...-.+.|-+||.+|..+||        .+.++.|++.+  
T Consensus       846 ~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh--------~~at~~ll~~g--  915 (2131)
T KOG4369|consen  846 AGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGH--------QAATLSLLQPG--  915 (2131)
T ss_pred             hhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccc--------cHHHHHHhccc--
Confidence            33444455566666666666666666666666665554323334456677777777777        77777777776  


Q ss_pred             hhhhc-hhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc-ccCCCC
Q 042244           85 QTLEQ-RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI-YSGNDG  162 (368)
Q Consensus        85 ~~~~~-~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-~~~~~g  162 (368)
                      .+++. ...+.+|+|.+|+..|+.+++.+|+.....+ +.+-+.|.|||+-++..|..|+=+.|+..+++.+. -.-...
T Consensus       916 sdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv-ehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~  994 (2131)
T KOG4369|consen  916 SDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV-EHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTW  994 (2131)
T ss_pred             chhccccccccccceeeccccCcchHHHHHHHHhhhh-hhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcC
Confidence            33333 3345667777777777777777777776544 66777777777777777777777777777776554 122344


Q ss_pred             chHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhc
Q 042244          163 ANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAE  205 (368)
Q Consensus       163 ~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~  205 (368)
                      .|+|.+++..||...+..|+... +-...+|++|+|+|.+++.
T Consensus       995 dtalti~a~kGh~kfv~~lln~~-atv~v~NkkG~T~Lwla~~ 1036 (2131)
T KOG4369|consen  995 DTALTIPANKGHTKFVPKLLNGD-ATVRVPNKKGCTVLWLASA 1036 (2131)
T ss_pred             CccceeecCCCchhhhHHhhCCc-cceecccCCCCcccchhcc
Confidence            56777777777777777666554 6667788888888887655

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.43  E-value=1e-12  Score=95.38  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=86.3

Q ss_pred             HHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHH
Q 042244           54 TIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI  133 (368)
Q Consensus        54 pLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh  133 (368)
                      -..|++++|.        .+-|+..+..+  .+++.+- .|++|||+|+-.|+.+++++|+..+.++ +.+|+.|-|||-
T Consensus         5 ~~~W~vkNG~--------~DeVk~~v~~g--~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLL   72 (117)
T KOG4214|consen    5 SVAWNVKNGE--------IDEVKQSVNEG--LNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLL   72 (117)
T ss_pred             hHhhhhccCc--------HHHHHHHHHcc--ccHHHHh-CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHH
Confidence            4567888888        88888888877  5555544 7899999999999999999999998765 888999999999


Q ss_pred             HHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH
Q 042244          134 QAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL  169 (368)
Q Consensus       134 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a  169 (368)
                      .|+..||.+++++|++.+++... +..+|.+.+..+
T Consensus        73 sAvwEGH~~cVklLL~~GAdrt~-~~PdG~~~~eat  107 (117)
T KOG4214|consen   73 SAVWEGHRDCVKLLLQNGADRTI-HAPDGTALIEAT  107 (117)
T ss_pred             HHHHHhhHHHHHHHHHcCcccce-eCCCchhHHhhc
Confidence            99999999999999999998876 788888776654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.41  E-value=9.2e-13  Score=95.63  Aligned_cols=103  Identities=15%  Similarity=0.129  Sum_probs=89.4

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcH
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTA   97 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tp   97 (368)
                      .....++++|..+.|+......-+.. ..  -.|++|||+|+-.|+        .+++++|+..+  +.++.+|+.|-||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn-~~--~ggR~plhyAAD~GQ--------l~ilefli~iG--A~i~~kDKygITP   70 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVN-EI--YGGRTPLHYAADYGQ--------LSILEFLISIG--ANIQDKDKYGITP   70 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHH-HH--hCCcccchHhhhcch--------HHHHHHHHHhc--cccCCccccCCcH
Confidence            45678899999999999998874443 32  379999999999999        99999999999  8899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHH
Q 042244           98 LYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQ  134 (368)
Q Consensus        98 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~  134 (368)
                      |.-|+..||.++|++|++++.+. ..+..+|.+.+-.
T Consensus        71 LLsAvwEGH~~cVklLL~~GAdr-t~~~PdG~~~~ea  106 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQNGADR-TIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHhhHHHHHHHHHcCccc-ceeCCCchhHHhh
Confidence            99999999999999999999875 6677788776543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.40  E-value=9.5e-12  Score=109.27  Aligned_cols=120  Identities=23%  Similarity=0.204  Sum_probs=108.1

Q ss_pred             hhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCC-----HHHHHHHHhhCC--CCcccc
Q 042244           86 TLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGH-----KDTFQYLREVTH--GVDIYS  158 (368)
Q Consensus        86 ~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~-----~~~v~~Ll~~~~--~~~~~~  158 (368)
                      .....+..+.+++|.++..+..+++++++..+.+. +.+|.+|.||||+|+.+++     .++++.|++.+.  +....+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            34566777999999999999999999999999888 9999999999999999999     999999999999  444447


Q ss_pred             CCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          159 GNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       159 ~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |.+|+||||+|+..|+.++++.+++.+ ...+.+|..|.|+++.+....
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~  191 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNG  191 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccc
Confidence            999999999999999999999999886 777788999999999887753

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=1.1e-12  Score=122.78  Aligned_cols=118  Identities=19%  Similarity=0.135  Sum_probs=94.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHc--CCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCc
Q 042244           19 PLYRMIEKNDWRGVEDFVTN--DPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYT   96 (368)
Q Consensus        19 ~Lh~A~~~G~~~~v~~Ll~~--~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~t   96 (368)
                      .|..|+..|.+|.|+.++.+  ||..    .|++|-|+||-|+..||        .+||++|++.+  .+++..|.+|||
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSq----pNdEGITaLHNAiCagh--------yeIVkFLi~~g--anVNa~DSdGWT  618 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQ----PNDEGITALHNAICAGH--------YEIVKFLIEFG--ANVNAADSDGWT  618 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCC----CCccchhHHhhhhhcch--------hHHHHHHHhcC--CcccCccCCCCc
Confidence            35678889999999988876  5543    48889999999999999        99999999998  888999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHH--HhhCCHHHHHHHHhh
Q 042244           97 ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQA--AYHGHKDTFQYLREV  150 (368)
Q Consensus        97 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A--a~~g~~~~v~~Ll~~  150 (368)
                      |||+|++-++..+++.|++.+..+.-..-.++.|+.--.  -+.|..+|.+||...
T Consensus       619 PLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  619 PLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999999999999988776555556677776543  234567788888653

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.37  E-value=1.5e-12  Score=88.14  Aligned_cols=54  Identities=33%  Similarity=0.453  Sum_probs=38.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHH
Q 042244           94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR  148 (368)
Q Consensus        94 G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll  148 (368)
                      |+||||+|++.|+.+++++|++++.++ +.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888887664 677888888888888888888888775

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=1.7e-12  Score=87.95  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=45.5

Q ss_pred             CCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHH
Q 042244           51 GSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLV  114 (368)
Q Consensus        51 g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll  114 (368)
                      |+||||+||+.|+        .++++.|++.+  .+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~--------~~~~~~Ll~~~--~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGN--------LEIVKLLLEHG--ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT---------HHHHHHHHHTT--SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCC--------HHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999        99999999998  678899999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.35  E-value=7.8e-13  Score=90.17  Aligned_cols=55  Identities=24%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             HhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHH
Q 042244           79 ASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQA  135 (368)
Q Consensus        79 l~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~A  135 (368)
                      |+.+ +.+++.+|..|+||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|
T Consensus         2 L~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHG-PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CccC-cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            4444 4555666666666666666666666666666444333 56666666666654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=6.3e-12  Score=128.11  Aligned_cols=107  Identities=19%  Similarity=0.141  Sum_probs=94.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCch
Q 042244           96 TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLY  175 (368)
Q Consensus        96 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~  175 (368)
                      +.|+.|+..|+.+.++.|++.+.+. +.+|.+|+||||+|+.+|+.+++++|++.+.+.+. +|.+|.||||+|+..++.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~-~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcH
Confidence            3588999999999999999998775 88999999999999999999999999999999887 999999999999999999


Q ss_pred             HHHHHHHHhC------CcccccCCCCCCcHHHHHh
Q 042244          176 DVALDLLKLY------PTIGRDNIDSRRIVLNALA  204 (368)
Q Consensus       176 ~~~~~Ll~~~------~~~~~~~~~~g~Tpl~l~~  204 (368)
                      ++++.|++..      +...+..+.+|++|+....
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999871      2556667777887766543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=4.7e-12  Score=129.08  Aligned_cols=103  Identities=17%  Similarity=0.128  Sum_probs=91.0

Q ss_pred             HHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHH
Q 042244           54 TIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI  133 (368)
Q Consensus        54 pLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh  133 (368)
                      .|+.|+..|+        .+.++.|++.+  .+++.+|.+|+||||+|+..|+.+++++|++.+.+. +.+|.+|+||||
T Consensus        85 ~L~~aa~~G~--------~~~vk~LL~~G--adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh  153 (664)
T PTZ00322         85 ELCQLAASGD--------AVGARILLTGG--ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLE  153 (664)
T ss_pred             HHHHHHHcCC--------HHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence            5889999999        99999999998  778999999999999999999999999999998775 899999999999


Q ss_pred             HHHhhCCHHHHHHHHhh-------CCCCccccCCCCchHHHH
Q 042244          134 QAAYHGHKDTFQYLREV-------THGVDIYSGNDGANMLSR  168 (368)
Q Consensus       134 ~Aa~~g~~~~v~~Ll~~-------~~~~~~~~~~~g~t~Lh~  168 (368)
                      +|+.+|+.+++++|+++       +++... .+.+|.+++..
T Consensus       154 ~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~-~~~~g~~~~~~  194 (664)
T PTZ00322        154 LAEENGFREVVQLLSRHSQCHFELGANAKP-DSFTGKPPSLE  194 (664)
T ss_pred             HHHHCCcHHHHHHHHhCCCcccccCCCCCc-cccCCCCccch
Confidence            99999999999999998       444443 56666666544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.4e-12  Score=88.83  Aligned_cols=56  Identities=23%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             HHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH
Q 042244          113 LVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL  169 (368)
Q Consensus       113 Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a  169 (368)
                      |+++++..++.+|..|+||||+|+.+|+.+++++|++.+.+... +|++|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~-~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA-KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC-CcCCCCCHHHhC
Confidence            45666556688888899999999999999999999988888776 888889998876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.28  E-value=2.7e-11  Score=105.78  Aligned_cols=120  Identities=18%  Similarity=0.231  Sum_probs=102.3

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCc
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYT   96 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~t   96 (368)
                      ..||..++..|+.+....||..-.+.  ...|+.|.|||..|+.+|+        .++|+.|++.+ .+.-..++..+.|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~v--n~~D~sGMs~LahAaykGn--------l~~v~lll~~g-aDvN~~qhg~~YT   81 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQV--NQRDPSGMSVLAHAAYKGN--------LTLVELLLELG-ADVNDKQHGTLYT   81 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhh--hccCCCcccHHHHHHhcCc--------HHHHHHHHHhC-CCcCccccccccc
Confidence            46899999999999999999873322  4559999999999999999        99999999998 3333456678999


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHH
Q 042244           97 ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR  148 (368)
Q Consensus        97 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll  148 (368)
                      |||+|+.+|+.+++++|++.+... +..|.-|+|+-..|+.-|+.++|..+=
T Consensus        82 pLmFAALSGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   82 PLMFAALSGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHHHHHHcCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHh
Confidence            999999999999999999998654 778888999999999999988877653

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=1.7e-11  Score=114.92  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             HHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHH
Q 042244           55 IFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQ  134 (368)
Q Consensus        55 Lh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~  134 (368)
                      |.=|+..|.        .++|+.++...  .++...|++|-|+||.|+..||.+||++|++.+.++ |..|.+|+||||+
T Consensus       554 LLDaaLeGE--------ldlVq~~i~ev--~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHC  622 (752)
T KOG0515|consen  554 LLDAALEGE--------LDLVQRIIYEV--TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHC  622 (752)
T ss_pred             HHhhhhcch--------HHHHHHHHHhh--cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhh
Confidence            455888899        99999999987  788899999999999999999999999999999876 9999999999999


Q ss_pred             HHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH--HhCchHHHHHHHH
Q 042244          135 AAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI--DATLYDVALDLLK  183 (368)
Q Consensus       135 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~--~~~~~~~~~~Ll~  183 (368)
                      |+.-++..+++.|.+.|+......=.+++|+..-|-  +.|..++.++|-.
T Consensus       623 AASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  623 AASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999999999998877645578899888763  3466677777653

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.26  E-value=6.1e-11  Score=103.60  Aligned_cols=121  Identities=21%  Similarity=0.218  Sum_probs=111.5

Q ss_pred             CCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCc
Q 042244           51 GSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL  130 (368)
Q Consensus        51 g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t  130 (368)
                      -..||.-+.-+|.        .+-...||+..  ..++.+|..|.++|..|+..|+.+.+++|++.+.++...++..+.|
T Consensus        12 ~~~~Lle~i~Knd--------t~~a~~LLs~v--r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YT   81 (396)
T KOG1710|consen   12 PKSPLLEAIDKND--------TEAALALLSTV--RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYT   81 (396)
T ss_pred             hhhHHHHHHccCc--------HHHHHHHHHHh--hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccccccc
Confidence            4689999999999        89899999886  7789999999999999999999999999999999987788899999


Q ss_pred             HHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHH
Q 042244          131 PVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLL  182 (368)
Q Consensus       131 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll  182 (368)
                      |||.|+..|+.++.+.|++.|..... .|.-|+|+-..|+--|+.+++..+-
T Consensus        82 pLmFAALSGn~dvcrllldaGa~~~~-vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   82 PLMFAALSGNQDVCRLLLDAGARMYL-VNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHHHHHHcCCchHHHHHHhccCcccc-ccchhhhHHHHHHHhcchHHHHHHh
Confidence            99999999999999999999998876 9999999999999999999887543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.09  E-value=5.8e-10  Score=105.45  Aligned_cols=123  Identities=20%  Similarity=0.180  Sum_probs=109.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHH
Q 042244           19 PLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTAL   98 (368)
Q Consensus        19 ~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpL   98 (368)
                      .+..|+..+|.-.+++.-..+.+++  ..+.+..|.||+|+..|+        -|+|++||+++.++.++..|..|.|+|
T Consensus       869 eil~av~~~D~~klqE~h~~gg~ll--~~~~~~~sllh~a~~tg~--------~eivkyildh~p~elld~~de~get~l  938 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSLL--IQGPDHCSLLHYAAKTGN--------GEIVKYILDHGPSELLDMADETGETAL  938 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCceE--eeCcchhhHHHHHHhcCC--------hHHHHHHHhcCCHHHHHHHhhhhhHHH
Confidence            3788999999988888887777765  337888999999999999        999999999997888999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCC
Q 042244           99 YQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTH  152 (368)
Q Consensus        99 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~  152 (368)
                      |-|+..++..++++|++.+..+ ...|.+|.||-.-|-+.|..+...||-.+..
T Consensus       939 hkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  939 HKAACQRNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             HHHHHhcchHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            9999999999999999999765 7889999999999999999999999876543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=1e-08  Score=101.17  Aligned_cols=86  Identities=21%  Similarity=0.202  Sum_probs=62.8

Q ss_pred             chhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC-CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCC
Q 042244           84 PQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT-LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDG  162 (368)
Q Consensus        84 p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  162 (368)
                      ....+++|..|+|+||+|+..|+.+++++|+++|.++ ..+|. .|.||||-|..+|+.|++..|++++..-.. +|++|
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i-~Dkeg  119 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRI-KDKEG  119 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCceEE-ecccC
Confidence            3457777777888888887777777888887777665 44544 577888888778887877777777766555 77777


Q ss_pred             chHHHHHHH
Q 042244          163 ANMLSRLID  171 (368)
Q Consensus       163 ~t~Lh~a~~  171 (368)
                      ..||....+
T Consensus       120 lsplq~~~r  128 (1267)
T KOG0783|consen  120 LSPLQFLSR  128 (1267)
T ss_pred             CCHHHHHhh
Confidence            777776554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.67  E-value=2.4e-08  Score=93.03  Aligned_cols=94  Identities=21%  Similarity=0.194  Sum_probs=80.2

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCC
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTL  127 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  127 (368)
                      +.++..++.+|++.|.        ...++.+.-.+  .+++.+|.+.+|+||+||..|+.+++++|++.+....+.+|..
T Consensus       503 ~~~~~i~~~~aa~~GD--------~~alrRf~l~g--~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw  572 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGD--------LSALRRFALQG--MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRW  572 (622)
T ss_pred             cccchhhhhhhhhcCC--------HHHHHHHHHhc--ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhcc
Confidence            4456678899999999        88888877777  7788999999999999999999999999999876666888999


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhhC
Q 042244          128 DSLPVIQAAYHGHKDTFQYLREVT  151 (368)
Q Consensus       128 G~tpLh~Aa~~g~~~~v~~Ll~~~  151 (368)
                      |+|||--|...+|.+++++|-+.-
T Consensus       573 ~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  573 GRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             CCCcchHhHhcCcHHHHHHHHHHh
Confidence            999999999999999998887653

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.66  E-value=8.7e-08  Score=91.04  Aligned_cols=111  Identities=18%  Similarity=0.113  Sum_probs=92.6

Q ss_pred             HHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCC-CccccCCCCCcHHHHHHhhCCHHHHHHHHhh
Q 042244           72 TCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPD-LTNKRDTLDSLPVIQAAYHGHKDTFQYLREV  150 (368)
Q Consensus        72 ~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~  150 (368)
                      .--+++.-..+  ..+..++.+..+.||+|++.|+-++|+++++++|. +++..|..|.|.||-|+..++..+.++|.+.
T Consensus       879 ~~klqE~h~~g--g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda  956 (1004)
T KOG0782|consen  879 LMKLQETHLNG--GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA  956 (1004)
T ss_pred             HHHHHHHHhcC--CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc
Confidence            33344444444  45677888889999999999999999999999764 5678889999999999999999999999999


Q ss_pred             CCCCccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          151 THGVDIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       151 ~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      ++.... .|..|.||-..|-+.|..+.+.+|-.+.
T Consensus       957 gasl~k-td~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  957 GASLRK-TDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             chhhee-cccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            887765 8899999999999999999988876653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.60  E-value=8e-08  Score=90.96  Aligned_cols=90  Identities=14%  Similarity=0.154  Sum_probs=77.2

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcH
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTA   97 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tp   97 (368)
                      -|||.++...+++.....+..+........|..|+||||+|+..|+        .+.++.|+..+  +++..+|.+|++|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~--------~~~a~~Ll~a~--Adv~~kN~~gWs~   91 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGH--------VEAARILLSAG--ADVSIKNNEGWSP   91 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcC--------HHHHHHHHhcC--CCccccccccccH
Confidence            4599999999998888876655333336678899999999999999        99999999998  7789999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhC
Q 042244           98 LYQCAVKGNLRALKVLVKYN  117 (368)
Q Consensus        98 Lh~A~~~g~~~~v~~Ll~~~  117 (368)
                      ||.|+..|+.+++..++.+.
T Consensus        92 L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   92 LHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHHHHHcCCHHHHHHHHHHh
Confidence            99999999999888888764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.57  E-value=7e-08  Score=95.46  Aligned_cols=94  Identities=19%  Similarity=0.063  Sum_probs=84.0

Q ss_pred             HHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccc
Q 042244          111 KVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGR  190 (368)
Q Consensus       111 ~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~  190 (368)
                      -++-+.+...++..|..|+|+||+|+..++.+++++|+++|.+.....-..|.||||.|+..|+.+++..||+++ ....
T Consensus        35 ~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~  113 (1267)
T KOG0783|consen   35 GFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLR  113 (1267)
T ss_pred             HHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC-CceE
Confidence            344455667789999999999999999999999999999999988744468999999999999999999999987 8888


Q ss_pred             cCCCCCCcHHHHHhc
Q 042244          191 DNIDSRRIVLNALAE  205 (368)
Q Consensus       191 ~~~~~g~Tpl~l~~~  205 (368)
                      .+|++|..||+...+
T Consensus       114 i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EecccCCCHHHHHhh
Confidence            999999999999877

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.54  E-value=1.9e-07  Score=88.43  Aligned_cols=89  Identities=19%  Similarity=0.246  Sum_probs=74.1

Q ss_pred             cHHHHHHHcCCcccccCChHHHHHH-HHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcH
Q 042244           53 MTIFHAIVELWVDVESDDATCLLDK-LASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLP  131 (368)
Q Consensus        53 tpLh~A~~~g~~~~~~~~~~~~v~~-Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tp  131 (368)
                      -|+|+++....        .+-... +... ....++.+|..|+||||+|+..|+.+.++.|+..+.+. ..+|++|++|
T Consensus        22 ~~lh~~~~~~~--------~~sl~~el~~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~   91 (560)
T KOG0522|consen   22 KPLHWAVVTTD--------SDSLEQELLAK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSP   91 (560)
T ss_pred             cccchhhhccc--------hhhHHHHHhhh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccH
Confidence            45999998888        554444 4444 24568899999999999999999999999999998765 7899999999


Q ss_pred             HHHHHhhCCHHHHHHHHhhC
Q 042244          132 VIQAAYHGHKDTFQYLREVT  151 (368)
Q Consensus       132 Lh~Aa~~g~~~~v~~Ll~~~  151 (368)
                      ||.|+..|+.+++..++.+.
T Consensus        92 L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   92 LHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHHHHHcCCHHHHHHHHHHh
Confidence            99999999999888887654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.51  E-value=1.2e-07  Score=88.40  Aligned_cols=94  Identities=13%  Similarity=0.058  Sum_probs=84.2

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      +...+..++.+|++.||...++.+.-...+.  .+.|.+.+|+||+||..|+        .+++|.|++.+ ..+++.+|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~--~~~DyD~RTaLHvAAaEG~--------v~v~kfl~~~~-kv~~~~kD  570 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDL--ETKDYDDRTALHVAAAEGH--------VEVVKFLLNAC-KVDPDPKD  570 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccc--cccccccchhheeecccCc--------eeHHHHHHHHH-cCCCChhh
Confidence            3455677899999999999999998776665  4558999999999999999        99999999998 67889999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhh
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKY  116 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~  116 (368)
                      +.|+|||--|...+|.+++++|-+.
T Consensus       571 Rw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  571 RWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             ccCCCcchHhHhcCcHHHHHHHHHH
Confidence            9999999999999999999999875

>PF13606 Ank_3: Ankyrin repeat

Probab=98.49  E-value=1.7e-07  Score=54.74  Aligned_cols=28  Identities=29%  Similarity=0.342  Sum_probs=17.3

Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCC
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGV  154 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~  154 (368)
                      +|+||||+||++|+.|++++|++.+++.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            3566666666666666666666665543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.44  E-value=2.5e-07  Score=94.28  Aligned_cols=128  Identities=13%  Similarity=-0.008  Sum_probs=105.3

Q ss_pred             ccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhc-CCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCcccc
Q 042244           46 KTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASK-VDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKR  124 (368)
Q Consensus        46 ~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~-~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  124 (368)
                      .....|.+.+|+++..++        ...++.+++. +  ......|.+|...+|+ |..++.++.-++.......++.+
T Consensus       569 ~~~~r~~lllhL~a~~ly--------awLie~~~e~~~--~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~  637 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLY--------AWLIEKVIEWAG--SGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIR  637 (975)
T ss_pred             cCCCcchHHHHHHHHHhH--------HHHHHHHhcccc--cCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccc
Confidence            335679999999999999        9999999997 5  4556778888889999 55677788877777766777999


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc-----ccCCCCchHHHHHHHhCchHHHHHHHHh
Q 042244          125 DTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI-----YSGNDGANMLSRLIDATLYDVALDLLKL  184 (368)
Q Consensus       125 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~  184 (368)
                      |.+|+||||||+.+|+..++..|.+.+++...     ..+.+|.|+-.+|-.+|+.++.-+|-+.
T Consensus       638 D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  638 DRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999999999988876654     2445688899999999988877766544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.42  E-value=4.2e-07  Score=54.44  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=18.7

Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCcc
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDI  156 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~  156 (368)
                      +|+||||+|+.+|+.+++++|++++++.+.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            366666666666666666666666655543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.40  E-value=9.7e-07  Score=82.86  Aligned_cols=88  Identities=14%  Similarity=0.015  Sum_probs=76.5

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCc
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYT   96 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~t   96 (368)
                      ..-||-.++.|+.|....||..+.+.. ..-...|.||||+|++.|+        ..-+++|+-.+  +++...|.+|.|
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N-~~hpekg~TpLHvAAk~Gq--------~~Q~ElL~vYG--AD~~a~d~~Gmt  202 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQAN-FFHPEKGNTPLHVAAKAGQ--------ILQAELLAVYG--ADPGAQDSSGMT  202 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccC-CCCcccCCchhHHHHhccc--------hhhhhHHhhcc--CCCCCCCCCCCc
Confidence            356999999999999999998865543 3335579999999999999        88899999888  899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHh
Q 042244           97 ALYQCAVKGNLRALKVLVK  115 (368)
Q Consensus        97 pLh~A~~~g~~~~v~~Ll~  115 (368)
                      |+-+|-..||.++.+.|++
T Consensus       203 P~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  203 PVDYARQGGHHELAERLVE  221 (669)
T ss_pred             HHHHHHhcCchHHHHHHHH
Confidence            9999999999888887776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.35  E-value=6.1e-07  Score=52.33  Aligned_cols=28  Identities=32%  Similarity=0.439  Sum_probs=25.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCC
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDL  120 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~  120 (368)
                      +|+||||+||+.|+.+++++|+++++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5899999999999999999999998654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.33  E-value=2.3e-06  Score=80.37  Aligned_cols=95  Identities=18%  Similarity=0.112  Sum_probs=81.8

Q ss_pred             hchhcCCCc------HHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCC
Q 042244           88 EQRDDIGYT------ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGND  161 (368)
Q Consensus        88 ~~~d~~G~t------pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~  161 (368)
                      ..+|++|.+      -||-.++.|+.+.+-.|+..|.+.-..--..|.||||.|++.|+..-++.|+-+|++... .|.+
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a-~d~~  199 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA-QDSS  199 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC-CCCC
Confidence            456666665      589999999999988888888776444455799999999999999999999999999997 9999


Q ss_pred             CchHHHHHHHhCchHHHHHHHH
Q 042244          162 GANMLSRLIDATLYDVALDLLK  183 (368)
Q Consensus       162 g~t~Lh~a~~~~~~~~~~~Ll~  183 (368)
                      |.||+.+|-..|+.++.+.|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999888877664

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.31  E-value=1.6e-06  Score=82.85  Aligned_cols=92  Identities=20%  Similarity=0.159  Sum_probs=64.3

Q ss_pred             HHHHHHHcCCcccccCChHHHHHHHHhcCCchhh--hchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcH
Q 042244           54 TIFHAIVELWVDVESDDATCLLDKLASKVDPQTL--EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLP  131 (368)
Q Consensus        54 pLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~--~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tp  131 (368)
                      -|.-|+...+        ...+-.||.++..+-+  ...+.+|+|+||+||+.|+..+.++|+..+.++ ..+|.+|+|+
T Consensus       627 qLl~A~~~~D--------l~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~  697 (749)
T KOG0705|consen  627 QLLRAVAAED--------LQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTA  697 (749)
T ss_pred             HHHHHHHHHH--------HHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchh
Confidence            3455566656        6667777777632222  223456778888888888888888888777665 6778888888


Q ss_pred             HHHHHhhCCHHHHHHHHhhCCCC
Q 042244          132 VIQAAYHGHKDTFQYLREVTHGV  154 (368)
Q Consensus       132 Lh~Aa~~g~~~~v~~Ll~~~~~~  154 (368)
                      |.+|-+.|..+++..|++++...
T Consensus       698 l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  698 LFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hhhHhhcccHHHHHHHHHcCCCc
Confidence            88888888888888888876543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.29  E-value=8.2e-07  Score=53.15  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=29.2

Q ss_pred             CCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           50 PGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        50 ~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      +|.||||+|+..|+        .++++.|++++  .+++.+|+
T Consensus         1 dG~TpLh~A~~~~~--------~~~v~~Ll~~g--a~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGH--------PDIVKLLLKHG--ADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTC--------HHHHHHHHHTT--SCTTCBCT
T ss_pred             CcccHHHHHHHHHH--------HHHHHHHHHCc--CCCCCCCC
Confidence            58999999999999        99999999988  76776653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.24  E-value=3.2e-06  Score=80.86  Aligned_cols=88  Identities=16%  Similarity=0.033  Sum_probs=74.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCC--Cc-cccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhC
Q 042244           97 ALYQCAVKGNLRALKVLVKYNPD--LT-NKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDAT  173 (368)
Q Consensus        97 pLh~A~~~g~~~~v~~Ll~~~~~--~~-~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~  173 (368)
                      -|.-|+...+...+-+|+.++..  +. ...+.+|+|+||+||+.|+..+.+.|+-++.+... +|.+|+|+|.+|-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~-rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMA-RDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcccee-cccCCchhhhhHhhcc
Confidence            45566777777788888887532  21 23566789999999999999999999999999987 9999999999999999


Q ss_pred             chHHHHHHHHhC
Q 042244          174 LYDVALDLLKLY  185 (368)
Q Consensus       174 ~~~~~~~Ll~~~  185 (368)
                      .-|++..|++.+
T Consensus       706 sqec~d~llq~g  717 (749)
T KOG0705|consen  706 SQECIDVLLQYG  717 (749)
T ss_pred             cHHHHHHHHHcC
Confidence            999999999886

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.04  E-value=1.9e-05  Score=79.29  Aligned_cols=125  Identities=17%  Similarity=0.045  Sum_probs=98.3

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCc--ccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPD--ALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~--~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ...+......|+..||.-.|+..++....  ...+..|.-|+++||+|+.+.+        .|+++.|+++.  ..  . 
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nen--------le~~eLLl~~~--~~--~-   88 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNEN--------LELQELLLDTS--SE--E-   88 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccccc--------HHHHHHHhcCc--cc--c-
Confidence            33455667899999999999999987433  3335568899999999999999        99999999986  21  2 


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCc---------cccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCC
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLT---------NKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGV  154 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~---------~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~  154 (368)
                          ..+|.+|++.|..++|+.++.+.....         ...=..+.|||.+||..++.|+++.|+.++...
T Consensus        89 ----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   89 ----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence                358889999999999999998732110         011223689999999999999999999988654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.97  E-value=4.5e-05  Score=76.68  Aligned_cols=124  Identities=15%  Similarity=0.022  Sum_probs=100.7

Q ss_pred             CCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCc--hhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           49 APGSMTIFHAIVELWVDVESDDATCLLDKLASKVDP--QTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        49 ~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p--~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      ..++--...||..|+        ...|+..++....  -+++.+|.-|+++||.|..+.+.++.++|++.....      
T Consensus        23 ~~~e~~fL~a~E~gd--------~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~------   88 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGD--------VPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE------   88 (822)
T ss_pred             chhhHHHHHHHHcCC--------hHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc------
Confidence            345556778999999        9999999987632  347889999999999999999999999999976432      


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCcc---------ccCCCCchHHHHHHHhCchHHHHHHHHhCCcc
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDI---------YSGNDGANMLSRLIDATLYDVALDLLKLYPTI  188 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~---------~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~  188 (368)
                        .-+|-.|+..|..++++.++.+......         ..-..+-||+-+|+..+++|+++.|+.++...
T Consensus        89 --gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   89 --GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             --chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence              2378889999999999999987554311         23345789999999999999999999987433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.94  E-value=1.1e-05  Score=82.71  Aligned_cols=86  Identities=23%  Similarity=0.259  Sum_probs=66.3

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      ..|.|+||.|+..|....+++|++.+.+ ++..|..|+||+|.+...|+...+..+++++++... .+.+|.+++++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a-~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA-FDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccccccccc-cCccCcchhhHHhh
Confidence            3577888888888888888888888766 488888888888888888888888888887777776 77888888888766


Q ss_pred             hCchHHHH
Q 042244          172 ATLYDVAL  179 (368)
Q Consensus       172 ~~~~~~~~  179 (368)
                      ..+.+++.
T Consensus       732 ~~~~d~~~  739 (785)
T KOG0521|consen  732 AANADIVL  739 (785)
T ss_pred             hccccHHH
Confidence            65555543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.94  E-value=8.4e-06  Score=83.42  Aligned_cols=127  Identities=18%  Similarity=0.077  Sum_probs=99.5

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHc-CCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTN-DPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~-~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ....|++.+|.++..|..-.++.+++. +-..  ...|.+|.-.+|. |..++        .+..-++.... ...++.+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~--~eld~d~qgV~hf-ca~lg--------~ewA~ll~~~~-~~ai~i~  637 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD--LELDRDGQGVIHF-CAALG--------YEWAFLPISAD-GVAIDIR  637 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCc--hhhcccCCChhhH-hhhcC--------CceeEEEEeec-ccccccc
Confidence            456689999999999999999999986 2221  3347788888888 55666        67777777665 5779999


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCC--c---cccCCCCCcHHHHHHhhCCHHHHHHHHhh
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDL--T---NKRDTLDSLPVIQAAYHGHKDTFQYLREV  150 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~--~---~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~  150 (368)
                      |..|+||||+|+.+|+.+++..|.+.+.+.  .   ...+..|.|+--+|..+|+..+..+|-+.
T Consensus       638 D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  638 DRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999999999999654331  1   23444699999999999998888777665

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.89  E-value=1.2e-05  Score=82.67  Aligned_cols=81  Identities=21%  Similarity=0.167  Sum_probs=42.8

Q ss_pred             CCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCc
Q 042244           51 GSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL  130 (368)
Q Consensus        51 g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t  130 (368)
                      |.|+||.|+..|.        ..+++.|++.+  ++++..|..|++|+|.+...|+...+..+++++.+. +..|.+|++
T Consensus       656 ~~s~lh~a~~~~~--------~~~~e~ll~~g--a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~  724 (785)
T KOG0521|consen  656 GCSLLHVAVGTGD--------SGAVELLLQNG--ADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKL  724 (785)
T ss_pred             ccchhhhhhccch--------HHHHHHHHhcC--CcchhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcc
Confidence            4555555555555        55555555555  445555555555555555555555555555544332 455555555


Q ss_pred             HHHHHHhhCCHH
Q 042244          131 PVIQAAYHGHKD  142 (368)
Q Consensus       131 pLh~Aa~~g~~~  142 (368)
                      |+++|....+.+
T Consensus       725 ~l~~a~~~~~~d  736 (785)
T KOG0521|consen  725 PLDIAMEAANAD  736 (785)
T ss_pred             hhhHHhhhcccc
Confidence            555554443333

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.62  E-value=0.00017  Score=60.12  Aligned_cols=70  Identities=21%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             hhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCC
Q 042244           85 QTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGV  154 (368)
Q Consensus        85 ~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~  154 (368)
                      ..++.+|..|+|++..|+..|+.+.+.+|+.++..-+...|..|.+.+.+|-+.|+.+++..|.+...+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4578899999999999999999999999999996666899999999999999999999999998875443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.55  E-value=0.00014  Score=66.66  Aligned_cols=123  Identities=14%  Similarity=0.060  Sum_probs=80.6

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCc
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYT   96 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~t   96 (368)
                      +-.|++|++.|+.+.|+.|++.+.++  +..|.-..+||++|+..||        .++||.||++|  +.+..-.-+|.-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV--N~vD~fD~spL~lAsLcGH--------e~vvklLLenG--AiC~rdtf~G~R  104 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV--NAVDRFDSSPLYLASLCGH--------EDVVKLLLENG--AICSRDTFDGDR  104 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc--chhhcccccHHHHHHHcCc--------HHHHHHHHHcC--CcccccccCcch
Confidence            45699999999999999999986655  4558888999999999999        99999999998  655544455654


Q ss_pred             HHHHHHHcCCH-------HHHHHHHhhCCCCccccCCCCCcHHH------HHHhhCC-HHHHHHHHhhCC
Q 042244           97 ALYQCAVKGNL-------RALKVLVKYNPDLTNKRDTLDSLPVI------QAAYHGH-KDTFQYLREVTH  152 (368)
Q Consensus        97 pLh~A~~~g~~-------~~v~~Ll~~~~~~~~~~d~~G~tpLh------~Aa~~g~-~~~v~~Ll~~~~  152 (368)
                       -|+++-+.++       ++.|..=.+.|-....+..-..|.||      .+.++|. .+.-+++++.+.
T Consensus       105 -C~YgaLnd~IR~mllsydi~KA~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arS  173 (516)
T KOG0511|consen  105 -CHYGALNDRIRRMLLSYDILKAFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARS  173 (516)
T ss_pred             -hhhhhhhHHHHHHHHHHHHHHHhhccCCcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhh
Confidence             4566554432       23333333333333333333334443      3444553 346666666544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.43  E-value=0.00038  Score=58.04  Aligned_cols=66  Identities=15%  Similarity=0.124  Sum_probs=59.8

Q ss_pred             CccccCCCCCcHHHHHHhhCCHHHHHHHHhhC-CCCccccCCCCchHHHHHHHhCchHHHHHHHHhCC
Q 042244          120 LTNKRDTLDSLPVIQAAYHGHKDTFQYLREVT-HGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYP  186 (368)
Q Consensus       120 ~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~  186 (368)
                      .++.+|..|+||++.|+..|+.+.+.||+.++ +.... .|..|.+++.+|-+.|..+.+..|.+...
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv-~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGV-TDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccc-cccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            35889999999999999999999999999999 56655 99999999999999999999998887753

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.40  E-value=0.00038  Score=63.89  Aligned_cols=72  Identities=24%  Similarity=0.321  Sum_probs=60.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHH
Q 042244           95 YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSR  168 (368)
Q Consensus        95 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  168 (368)
                      +--|..||+.|..+.++.|++.+..+ |.+|.....||.+|+.-||.+++++|+++|+.... ..-+|..++.-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r-dtf~G~RC~Yg  108 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR-DTFDGDRCHYG  108 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc-cccCcchhhhh
Confidence            44688999999999999999987654 99999999999999999999999999999987754 44567665443

>smart00248 ANK ankyrin repeats

Probab=96.20  E-value=0.0087  Score=32.95  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=10.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhh
Q 042244           94 GYTALYQCAVKGNLRALKVLVKY  116 (368)
Q Consensus        94 G~tpLh~A~~~g~~~~v~~Ll~~  116 (368)
                      |.||+|+|+..++.++++.|++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            34444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.05  E-value=0.011  Score=32.42  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=24.8

Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCC
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGV  154 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~  154 (368)
                      +|.||+|+|+..++.++++.+++.+.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4789999999999999999999887643

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.07  E-value=0.075  Score=50.97  Aligned_cols=63  Identities=17%  Similarity=0.101  Sum_probs=44.5

Q ss_pred             HHHHHHHHhhCCCC-----ccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244          107 LRALKVLVKYNPDL-----TNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus       107 ~~~v~~Ll~~~~~~-----~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      ...+++|.++..+.     ....+..--|+||+|+.+|..+++.++|+.++++.. +|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~-kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST-KDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh-cccCCCCcccccc
Confidence            34555665553322     112233356889999999999999999998888876 8899999988765

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.05  E-value=0.057  Score=51.73  Aligned_cols=50  Identities=20%  Similarity=0.204  Sum_probs=41.6

Q ss_pred             chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhC
Q 042244           89 QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHG  139 (368)
Q Consensus        89 ~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g  139 (368)
                      ..|..-.|+||+|+..|..+++.++++.+.+. ...|..|+||..++....
T Consensus       425 ~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~nkd  474 (591)
T KOG2505|consen  425 ANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSANKD  474 (591)
T ss_pred             ccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccccHH
Confidence            33444679999999999999999999998554 789999999999987433

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.94  E-value=0.94  Score=39.38  Aligned_cols=89  Identities=12%  Similarity=0.017  Sum_probs=64.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCC----CCccccCCCCCcHHHHHHh--hCCHHHHHHHHhhCCCCcc---ccCCCCchH
Q 042244           95 YTALYQCAVKGNLRALKVLVKYNP----DLTNKRDTLDSLPVIQAAY--HGHKDTFQYLREVTHGVDI---YSGNDGANM  165 (368)
Q Consensus        95 ~tpLh~A~~~g~~~~v~~Ll~~~~----~~~~~~d~~G~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~---~~~~~g~t~  165 (368)
                      .+++-+|...+..+++-+|+.+-.    +++...  .+..-+-++-.  .....+.++.+++|-....   .+-++|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~--~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME--KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcC--cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            468888888888999999998732    221111  12223444332  2367888999988743322   577899999


Q ss_pred             HHHHHHhCchHHHHHHHHhC
Q 042244          166 LSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       166 Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      |+-|++.++.+++..|++.|
T Consensus       258 LDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcC
Confidence            99999999999999999887

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=86.50  E-value=5.9  Score=34.59  Aligned_cols=116  Identities=9%  Similarity=0.084  Sum_probs=80.5

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh----cC
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD----DI   93 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d----~~   93 (368)
                      -.|-.|+..-+++.+..++....         +-.+++-+|..++.        .+++-.|+....   ...+|    ..
T Consensus       155 isledAV~AsN~~~i~~~VtdKk---------dA~~Am~~si~~~K--------~dva~~lls~f~---ft~~dv~~~~~  214 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKK---------DAHQAMWLSIGNAK--------EDVALYLLSKFN---FTKQDVASMEK  214 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchH---------HHHHHHHHHhcccH--------HHHHHHHHhhcc---eecchhhhcCc
Confidence            45677888888887777765422         23578888888888        899999998751   11111    11


Q ss_pred             CCcHHHHHHHc--CCHHHHHHHHhhCCCC---ccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCC
Q 042244           94 GYTALYQCAVK--GNLRALKVLVKYNPDL---TNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG  153 (368)
Q Consensus        94 G~tpLh~A~~~--g~~~~v~~Ll~~~~~~---~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~  153 (368)
                      +..-+-++-+.  .+..++++.+.+|-.-   .-.+-+.|.|-|--|..+++.+++..|++.|+.
T Consensus       215 ~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  215 ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            33334444432  3577888888886322   234566799999999999999999999999874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=85.22  E-value=10  Score=32.10  Aligned_cols=138  Identities=12%  Similarity=0.006  Sum_probs=83.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCc
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYT   96 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~t   96 (368)
                      .-.+..|++.+..+++++.-+.-.+.     -...++.+-.||+..+        .|+|+.+-+.-  .   .  .+-.+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qk--------ydiV~WI~qnL--~---i--~~~~~  106 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQK--------YDIVKWIGQNL--H---I--YNPED  106 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHcc--------ccHHHHHhhcc--C---C--CCchh
Confidence            34577888888888877765541110     1235677788888888        88888875543  1   1  11234


Q ss_pred             HHHHHHHcCCHHHH----HHHHhhCCCCccccCCC--CCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244           97 ALYQCAVKGNLRAL----KVLVKYNPDLTNKRDTL--DSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus        97 pLh~A~~~g~~~~v----~~Ll~~~~~~~~~~d~~--G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      .+-.|...++.+..    +++.++.... ...|..  -.--|.+|+.+|-.+-+...++++.+.+       +++|..|+
T Consensus       107 iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~Av  178 (192)
T PF03158_consen  107 IFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAV  178 (192)
T ss_pred             hhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHH
Confidence            55667777765542    2233331111 011111  0123677888888888888887776543       27888888


Q ss_pred             HhCchHHHHHHH
Q 042244          171 DATLYDVALDLL  182 (368)
Q Consensus       171 ~~~~~~~~~~Ll  182 (368)
                      +.++..+..+++
T Consensus       179 ~ynhRkIL~yfi  190 (192)
T PF03158_consen  179 KYNHRKILDYFI  190 (192)
T ss_pred             HhhHHHHHHHhh
Confidence            888888877665

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=80.95  E-value=3.5  Score=29.42  Aligned_cols=47  Identities=19%  Similarity=0.190  Sum_probs=35.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhh
Q 042244           96 TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV  150 (368)
Q Consensus        96 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~  150 (368)
                      ..+..|...|+.|+++.+++... .    +   ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-~----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-P----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-c----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            45778888888988888886541 1    1   3468888888888888888876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-05
2rfa_A	232	Transient receptor potential cation channel subfa	1e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-05

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKY--NPDLTNKRDTLDSLPVIQAAYHGHKDTFQ 145
              D  G+T L+  A   N++  K LV+           D   +    +    G+    Q
Sbjct: 97  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156

Query: 146 YLREVTHGVDIYSGNDG 162
           +L        +   N G
Sbjct: 157 FL--YGVQEKMGIMNKG 171

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
              +D G TAL+     G+   +K LV++  ++ N  D+    P+  AA   +    ++L
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 148 REVTHGVDI----YSGNDGANML 166
             V  G  +    YS    A   
Sbjct: 123 --VESGAAVFAMTYSDMQTAADK 143

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 91  DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
           +  G  +L         +     + +   +  K + L    ++ ++  G  D  Q +  +
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRI--I 57

Query: 151 THGVDIYSGND 161
               D    ND
Sbjct: 58  YEVDDPSLPND 68

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           +   DD     + +    G     + LV+   D+  + D  +   +  AA +   D  +Y
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKY 60

Query: 147 LREVTHGVDI 156
              ++ G  +
Sbjct: 61  Y--ISKGAIV 68

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 88  EQRDDIGYTALYQCAVKGN-LRALKVLVKYNPDLTNKRDTLDSL-PVIQAAYHGHKDTFQ 145
           +  D  G T L   A + + +   ++L+ +N  + N  D       +  A   G+     
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVIS 194

Query: 146 YLREVTHGVDIYSGND 161
            L  +  G ++ + N 
Sbjct: 195 LL--LEAGANVDAQNI 208

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           +   D+  T L+    +G+L  +  L+KY  D  +  D      +  AA  GH     YL
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYL 128

Query: 148 REVTHGVDI 156
             +  G D+
Sbjct: 129 --IAKGQDV 135

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
            Q D    T L+  A+   +  +K  +     +      L+S P+  A   GH      L
Sbjct: 36  RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95

Query: 148 REVTHGVDI 156
             + +G D 
Sbjct: 96  --MKYGADP 102

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
             TAL+   + GN   + +L++   ++ + ++      +  A    +     +L+E    
Sbjct: 177 KNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQE--AR 233

Query: 154 VDI 156
              
Sbjct: 234 QAK 236

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 71  ATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL 130
              L     +      L+  +  G+T L+  ++ G L  +++LV    D+ N ++  +  
Sbjct: 94  VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGR 152

Query: 131 -PVIQAAYHGHKDTFQYLREVTHGVDI 156
             +  A    + D    L  +  G D+
Sbjct: 153 TALHLAVDLQNPDLVSLL--LKCGADV 177

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLT-----NKRDTLDSLPVIQAAYHGHKDTF 144
           RD  G T L+    +G L ++ VL +              +      +  A+ HG+    
Sbjct: 74  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133

Query: 145 QYLREVTHGVDI 156
           + L  V+ G D+
Sbjct: 134 ELL--VSLGADV 143

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKY--NPDLTNKR-DTLDSLPVIQAAYHGHKDT 143
           L  ++++  T L+   +       + L+    +P+L + R +T    P+  A   G   +
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNT----PLHLACEQGCLAS 93

Query: 144 FQYLREVTHGVDIYSGND 161
              L         +  + 
Sbjct: 94  VGVL--TQSCTTPHLHSI 109

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKY---NPDLTNKRDTLDSLPVIQAAYHGHKDTF 144
           +Q  + G + L+   +         +++    +    N ++ L   P+  A      +  
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 145 QYLREVTHGVDI 156
           + L  +  G D 
Sbjct: 62  EAL--LGAGCDP 71

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
              +  G TAL+Q  +  N+  +K LV+   ++ N+ D    +P+  AA  G+ D  +YL
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYL 125

Query: 148 REVTHGVDIYSGN-DG 162
             ++ G  + + N +G
Sbjct: 126 --ISQGAHVGAVNSEG 139

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
            +    G TAL+  A KG    LK+L++   D+ N +D     P+  AA+ G ++  + L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 148 REVTHGVDIYSG-NDG 162
             V +  D+ +    G
Sbjct: 252 --VENLCDMEAVNKVG 265

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDS-LPVIQAAYHGHKDTFQY 146
              +  G   +    + G+ +  ++L+ +  +  N  D      PV  AA  G  DT   
Sbjct: 39  NALNRFGRRPIQ-VMMMGSAQVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVV 96

Query: 147 LREVTHGVDI 156
           L     G  +
Sbjct: 97  L--HRAGARL 104

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 88  EQRDDIGYT-ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
              D    T  ++  A +G L  L VL +    L +  D    LPV  A   GH+D  +Y
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARY 129

Query: 147 LREVTHGVD 155
           L       D
Sbjct: 130 LHA--ATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
                     L   A +G +  ++ L++   D  N  +     P+      G     + L
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELL 63

Query: 148 REVTHGVDI 156
             + HG + 
Sbjct: 64  --LLHGAEP 70

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
              +++Q A +G L  LK  ++   +L NK D     P+I A+  G  +T ++L  +  G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL--LEWG 59

Query: 154 VDIYSGND 161
            D +    
Sbjct: 60  ADPHILAK 67

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.8 bits (115), Expect = 6e-07
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 74  LLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI 133
            L K  + V+     + D+ G+T L   +  G +  ++ L+++  D  +         + 
Sbjct: 21  HLRKGDNLVN-----KPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALS 74

Query: 134 QAAYHGHKDTFQYLREVTHGVDI 156
            A+  G+ D    L  +   VDI
Sbjct: 75  LASTGGYTDIVGLL--LERDVDI 95

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           +   D  G T L       +++ ++ L+    DL          P+  A   G++   Q 
Sbjct: 95  INIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQV 153

Query: 147 LREVTHGVDIYSGN 160
           +    H + ++  N
Sbjct: 154 I--ENHILKLFQSN 165

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           L Q++ +G TAL+  A KG    +++L+       + R+    L    A         + 
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKK 191

Query: 147 LREVTHGVDIYSGNDGAN 164
                        N    
Sbjct: 192 K--QGTDAVRTLSNAEDY 207

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
           + +     L++ A +GNL  L+  +     + N  D   S  +  A + GHKD  + L  
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEML-- 125

Query: 150 VTH-GVDI 156
            T   +++
Sbjct: 126 FTQPNIEL 133

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           +    D+  T  ++   KG       L+  N     ++      P+ +AA  G+    + 
Sbjct: 38  IIYITDMSDTNWWKGTSKGRTG----LIPSN--YVAEQAESIDNPLHEAAKRGNLSWLRE 91

Query: 147 LREVTHGVDI 156
              + + V +
Sbjct: 92  C--LDNRVGV 99

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 74  LLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI 133
            LD   + ++     Q DD G++ L+    +G    +++L+     + N  +  D  P+ 
Sbjct: 24  WLDNTENDLN-----QGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLH 77

Query: 134 QAAYHGHKDTFQYLREVTHGVDI 156
            AA HGH+D  Q L  + +  DI
Sbjct: 78  LAASHGHRDIVQKL--LQYKADI 98

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 91  DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
                  ++    +GN  A+++ +    +  N+ D     P+  A   G     + L  +
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML--I 59

Query: 151 THGVDIYSGNDG 162
             G  I   N G
Sbjct: 60  MRGARINVMNRG 71

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.4 bits (101), Expect = 6e-05
 Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
            ++ G   L+     G  +  + LV     + +  +    +PV +A     +   +    
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERA-- 157

Query: 150 VTHGVDI 156
              G ++
Sbjct: 158 EKMGQNL 164

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.3 bits (114), Expect = 4e-07
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +D  G T L+  A  G+L  +K+L++   D+ N +D     P+  AA +GH +  + L
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 148 REVTHGVDI 156
             +  G D+
Sbjct: 88  --LEAGADV 94

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 42.3 bits (101), Expect = 3e-05
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +D  G T L+  A  G+L  +K+L++   D+ N +D     P+  AA +GH +  + L
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL 120

Query: 148 REVTHG 153
             +  G
Sbjct: 121 --LEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.9 bits (100), Expect = 3e-05
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
           G T L+  A  G+L  +K+L++   D+ N +D     P+  AA +GH +  + L  +  G
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL--LEAG 58

Query: 154 VDI 156
            D+
Sbjct: 59  ADV 61

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           ++    +GYT L+  +  GN++ +K L+++  D+ N +  L   P+ QAA  GH D    
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTL 362

Query: 147 LREVTHGVDIYSG-NDGANML 166
           L  + +G       +DG   L
Sbjct: 363 L--LKNGASPNEVSSDGTTPL 381

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 74  LLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI 133
           LL+  A+             G+T L+  A +G++  +  L++               P+ 
Sbjct: 99  LLENNAN------PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLH 151

Query: 134 QAAYHGHKDTFQYLREVTHGVDIYS-GNDG 162
            AA +G     + L  +       + G +G
Sbjct: 152 VAAKYGKVRVAELL--LERDAHPNAAGKNG 179

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
              +    T L+  A  G+    K L++    + N +   D  P+  AA  GH +  + L
Sbjct: 41  NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLL 99

Query: 148 REVTHGVDI 156
             + +  + 
Sbjct: 100 --LENNANP 106

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
              +  G T L+  A +G++    VL+K+   + +    +   P+  A+++G+    ++L
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFL 330

Query: 148 REVTHGVDI 156
             + H  D+
Sbjct: 331 --LQHQADV 337

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +     T L+  A  G+   +K+L++ N +  N   T    P+  AA  GH +T   L
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLAL 132

Query: 148 REVTHGVDIYSGND 161
             +           
Sbjct: 133 --LEKEASQACMTK 144

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +  +GY+ L+Q A +G+   + +L+K      N+  +  + P+  A   G+      L
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVL 396

Query: 148 REVT-HGVDIYSGND 161
           + VT     +   + 
Sbjct: 397 KVVTDETSFVLVSDK 411

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
                 G T L+  A +G+   + +L+    +  N  +     P+   A  GH      L
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 148 REVTHGVDI 156
             + HGV +
Sbjct: 298 --IKHGVMV 304

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
               + G T L+  +  G+L  +K L++      N  +     P+  AA  GH +  +YL
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYL 66

Query: 148 REVTHGVDI 156
             + +   +
Sbjct: 67  --LQNKAKV 73

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
                  G T L+      NL  +K+L+       +        P+  AA     +  + 
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARS 230

Query: 147 LREVTHGVDIYSGND 161
           L  + +G    + + 
Sbjct: 231 L--LQYGGSANAESV 243

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
            Q ++ G TAL+      N   +  L+    ++ N  D+    P+  AA          L
Sbjct: 48  SQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMAL 106

Query: 148 REVTHGVDIY--SGNDG 162
             V HG  I+  + +DG
Sbjct: 107 --VQHGAAIFATTLSDG 121

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
              +  G   +    + G+ R  ++L+ +  +         + PV  AA  G  DT   L
Sbjct: 39  NAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97

Query: 148 REVTHGVDI 156
                G  +
Sbjct: 98  --HRAGARL 104

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 88  EQRDDIGYT-ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
              D    T  ++  A +G L  L VL +    L + RD    LPV  A   GH+D  +Y
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARY 129

Query: 147 LREVTHGVDI 156
           LR        
Sbjct: 130 LRA--AAGGT 137

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.2 bits (111), Expect = 9e-07
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             R   G T L+  A  G+   +K+L+    D+ N R    + P   A  +GH +  + L
Sbjct: 36  NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLL 94

Query: 148 REVTHGVDI 156
                G D+
Sbjct: 95  --DAKGADV 101

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 91  DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
              G T L+  A  G+   +K L+    D+ N R    + P+  AA +GH +  + L  +
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLL--L 62

Query: 151 THGVDI 156
             G D+
Sbjct: 63  AKGADV 68

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.6 bits (117), Expect = 9e-07
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           + +D  G T L+  A KG+   ++ L+       N +D     P+I A  + H D  + L
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

Query: 148 REVTHGVDI 156
             ++ G DI
Sbjct: 131 --LSKGSDI 137

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.0 bits (113), Expect = 3e-06
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           +       + L+  A  G++    +LV+   ++ +        P+++AA + H +  +YL
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 148 REVTHGVDIYSGND 161
             +  G  +   + 
Sbjct: 64  --IKAGALVDPKDA 75

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 46.6 bits (112), Expect = 3e-06
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 73  CLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPV 132
            LL      V+      +DD G+T +       ++  +K+L+    D+ N RD  +++ +
Sbjct: 95  YLLSNGQMDVN-----CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICL 148

Query: 133 IQAAYHGHKDTFQYLREVTHGVDIYSGND 161
             AA+ G  D  + L  +    D+++ N 
Sbjct: 149 HWAAFSGCVDIAEIL--LAAKCDLHAVNI 175

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             RD+     L+  A  G +   ++L+    DL +  +     P+  AA     D     
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLF 196

Query: 148 REVTHGVDIYSGND 161
             ++   D+   N 
Sbjct: 197 --LSRDSDVTLKNK 208

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           +   +   T L + A   +L A+K L+K    + + +D   S  +  AA  GH +  QYL
Sbjct: 38  DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYL 96

Query: 148 REVTHG-VDI 156
             +++G +D+
Sbjct: 97  --LSNGQMDV 104

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           L   +  G + L+  A +     + + +  + D+   ++     P+  A+ +    +   
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASLNSQVWSALQ 228

Query: 147 LREVTHGVD 155
           +       D
Sbjct: 229 M--SKALQD 235

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.0 bits (110), Expect = 9e-07
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
               L + A  G    +++L+    D+   +D   S P+  AA +GH +  + L  +  G
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLL--LEAG 80

Query: 154 VDIYSGND 161
            D+ + + 
Sbjct: 81  ADVXAQDK 88

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +D  G T L+  A  G+L  +K+L++   D+   +D         +  +G++D  + L
Sbjct: 51  AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNGNEDLAEIL 109

Query: 148 R 148
           +
Sbjct: 110 Q 110

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.4 bits (114), Expect = 9e-07
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
              D  G+T L+  A  G+L  ++VL+K   D+ N  D     P+  AA  GH +  + L
Sbjct: 41  NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVL 99

Query: 148 REVTHGVDI 156
             + +G D+
Sbjct: 100 --LKNGADV 106

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
              D  G T L   A+ G+L  ++VL+K   D+ N  D     P+  AA  GH +  + L
Sbjct: 74  NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 148 REVTHGVDI 156
             + +G D+
Sbjct: 133 --LKNGADV 139

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.3 bits (101), Expect = 5e-05
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
               L + A  G    +++L+    D+ N  D     P+  AA++GH +  + L  + +G
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVL--LKNG 70

Query: 154 VDIYSG-NDG 162
            D+ +  + G
Sbjct: 71  ADVNAVDHAG 80

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
              D  G+T L+  A+ G+L  ++VL+K   D+ N +D         +  +G++D  + L
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
            +  G T L+  ++KG++ +++ L++   D  N +D     P+ +A  HGH    + L  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELL-- 62

Query: 150 VTHGVDIYS-GNDG 162
           + H   + + G   
Sbjct: 63  LQHKALVNTTGYQN 76

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 44.7 bits (107), Expect = 5e-06
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +D  G+T L++    G+L+ +++L+++   + N     +  P+  AA +GH D  + L
Sbjct: 37  NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVKLL 95

Query: 148 REVTHGVDIYSGND 161
             +++G    + N 
Sbjct: 96  --LSYGASRNAVNI 107

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
            +  + G   L+  A  G L  L+ L+    D+ N  D     P++ A Y GH    + L
Sbjct: 34  NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLL 92

Query: 148 REVTHGVDIYSG-NDG 162
             ++ G D      DG
Sbjct: 93  --LSKGADKTVKGPDG 106

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 41.2 bits (98), Expect = 6e-05
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
                      G+L  +K  V    D+ N+       P+  AA  G  +  ++L  +  G
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFL--LLKG 63

Query: 154 VDI 156
            DI
Sbjct: 64  ADI 66

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 74  LLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI 133
           + D    K++     + DD     ++  A KG    ++ L++        ++      + 
Sbjct: 5   MTDF--PKLNR---IKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALH 58

Query: 134 QAAYHGHKDTFQYLREVTHGVDI 156
            A   G  DT +YL   + G   
Sbjct: 59  LACKFGCVDTAKYL--ASVGEVH 79

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           L+  +  G + L+   +          V+   D+ N  D   ++P+  +         + 
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKE 262

Query: 147 LREVTHGVDI----YSGNDGANMLSRLID 171
           L  +             ++G  +L   + 
Sbjct: 263 L--LQKTDVFLIQACPYHNGTTVLPDRVV 289

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 5/83 (6%), Positives = 21/83 (25%), Gaps = 4/83 (4%)

Query: 86  TLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQ 145
           T+     +    +   A       L++L +   ++  +     +   ++          +
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV-VRSLNTGAGGAVKRKKKAAPAVKR 340

Query: 146 YLREVTHGVDI-YSGNDGANMLS 167
               +     +       A   +
Sbjct: 341 MK--LAPSAPVRTRSRSRARSSA 361

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDL----TNKRDTLDSLPVIQAAYHGHKDT 143
             +D    T L +     N  AL +++   P       +  +   +  +  A     +D 
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226

Query: 144 FQYLREVTHGVDI 156
                 V  G+D+
Sbjct: 227 AMRF--VEMGIDV 237

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 10/81 (12%), Positives = 19/81 (23%), Gaps = 14/81 (17%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLT------------NKRDTLDSLPVIQA 135
              D+     LY       +   K L++                       +    V  A
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297

Query: 136 AYHGHKDTFQYLREVTHGVDI 156
           A    ++  Q L       ++
Sbjct: 298 ADPSKQEVLQLL--QEKLDEV 316

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 7/68 (10%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNK-RDTLDSLPVIQAAYHGHKDTFQYLR 148
           ++  G TAL+     G +   K L       +          P+  A      D    L 
Sbjct: 49  QNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK----PIHLAVMANKTDLVVAL- 103

Query: 149 EVTHGVDI 156
            V    + 
Sbjct: 104 -VEGAKER 110

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           +++D+ G T +   A +G +  +  L++    +    D  D      A  + H +     
Sbjct: 307 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIF 365

Query: 148 REVTHGVDI 156
                  + 
Sbjct: 366 --DRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           +   D    T L    +    R +  L+K   D     +  +   + QAA +       Y
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVY 217

Query: 147 L-REVTHGVDI 156
           +        DI
Sbjct: 218 MLNSTKLKGDI 228

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           +     G TAL+  A   N+  +K LV       +K+D     P++ AA  G  +   YL
Sbjct: 273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 332

Query: 148 REVTHGVDIYSG-NDG 162
             +  G  + +     
Sbjct: 333 --IQQGASVEAVDATD 346

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
            + +      L+     G+    + + + + ++ + R   +   +   A +   +  + L
Sbjct: 88  TEPEPESPIKLH-TEAAGSYAITEPITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDL 144

Query: 148 REVTHGVDIYSGNDGAN 164
             + H         GA+
Sbjct: 145 --IVHEAK-ECIAAGAD 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           +       +AL     KG    +K+L+    D+ N+ D     P++ A +  H    + L
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 148 REVTHGVDIYSG-NDG 162
             +  G D     + G
Sbjct: 122 --LESGADPTIETDSG 135

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.8 bits (110), Expect = 4e-06
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           +   D+ G+T L   A  G +  ++ L++   D            +  A   G+ D  + 
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKM 87

Query: 147 LREVTHGVDI 156
           L  +  GVD+
Sbjct: 88  L--LDCGVDV 95

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.1 bits (108), Expect = 5e-06
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
            + D  G T L       +++ +K+L++   D            +  A   G++   Q +
Sbjct: 96  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVI 154

Query: 148 REVTHGVDI 156
              +H + +
Sbjct: 155 --ESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
              +++Q A +G +  L   ++    + N  D     P++ AA HG     ++L  + +G
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFL--LQNG 59

Query: 154 VDIYS-GNDG 162
            D    G   
Sbjct: 60  ADPQLLGKGR 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 42/255 (16%), Positives = 84/255 (32%), Gaps = 61/255 (23%)

Query: 17  YWPLYRMIEKNDWRGVEDFVTN-DPDALTAK----TIAPGSMTI-FHAIVELWVDVESDD 70
            W      +      +E  +   +P          ++ P S  I    +  +W DV   D
Sbjct: 346 NWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 71  ATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVK-----GNLRAL--KVLVKYNPDLTNK 123
              +++KL        +E++      ++    ++      N  AL   ++  YN  +   
Sbjct: 404 VMVVVNKLHKY---SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN--IPKT 458

Query: 124 RDTLDSLPVIQ-------AAYH------GHK-DTFQ--YL------REVTHGVDIYSGND 161
            D+ D +P            +H        +   F+  +L      +++ H  D  + N 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH--DSTAWNA 516

Query: 162 GANMLSRLIDATLYD------------VALDLLKLYPTIGRDNIDSR--RIVLNAL-AEK 206
             ++L+ L     Y             +   +L   P I  + I S+   ++  AL AE 
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576

Query: 207 PYAFASGSRLGHLQR 221
              F    +   +QR
Sbjct: 577 EAIFEEAHK--QVQR 589

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKY--NPDLTNKRDTLDSLPVIQAAYHGHKDTFQ 145
                  +T L+   V G+   + +L+++  +    +   +    P+ +AA  GH +   
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS----PIHEAARRGHVECVN 174

Query: 146 YLREVTHGVDI 156
            L  + +G +I
Sbjct: 175 SL--IAYGGNI 183

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.9 bits (110), Expect = 8e-06
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
                   + L++  + G+L  +K+L+K+   + N        P+  A   G  D    L
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLL 144

Query: 148 REVTHGVDIYSGNDGA 163
             + HG  +   +D A
Sbjct: 145 --LQHGASVQPESDLA 158

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.9 bits (110), Expect = 8e-06
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           ++ +     T LY          +K L++   D+ N+    DS P+        ++    
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDS-PLHAVVRTASEELACL 240

Query: 147 LREVTHGVDIYSGND 161
           L  +  G D  + N 
Sbjct: 241 L--MDFGADTQAKNA 253

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.2 bits (103), Expect = 7e-05
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
            ++ +++ A+ G+  +L+ L+     + N        P+ +A   GH    + L  + HG
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKIL--LKHG 115

Query: 154 VDI 156
             +
Sbjct: 116 AQV 118

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +D  G + ++  A  G L  LKVLV++  D+ N  D   +LP+  A   GH     +L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFL 120

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
            +++    T L+  A + +   ++VL K+   + N  D+L    + +AA  GH  T + L
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLL 299

Query: 148 REVTHGVDI 156
             +++G D 
Sbjct: 300 --LSYGSDP 306

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.3 bits (111), Expect = 7e-06
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
           +D  G   L+     G+    ++L+K+   + N  D     P+ +AA     +    L  
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLL-- 143

Query: 150 VTHGVDI 156
           ++HG D 
Sbjct: 144 LSHGADP 150

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 90  RDDIGYTALYQCAVKGNL-RALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR 148
             +     L + A  GN  + + +L   N +  +  D   S P+  AA +      Q L 
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLL- 77

Query: 149 EVTHGVDI 156
            + HG D+
Sbjct: 78  -LQHGADV 84

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
            D    T L+  A    +R +++L+++  D+ + +D    +P+  A  +GH +  + L  
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELL-- 110

Query: 150 VTHGVDI 156
           + HG  +
Sbjct: 111 LKHGACV 117

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 90  RDDIGYTALYQCAVKG---NLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           +     TAL+           +  ++L++   ++ N+++     P+  AA   H D  + 
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEV 265

Query: 147 LREVTHGVDI 156
           L    HG  +
Sbjct: 266 L--HKHGAKM 273

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 43.9 bits (105), Expect = 4e-06
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +D  G T L+  A  G+L  +K+L++   D+ N +D     P+  AA +GH +  + L
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 148 REVTHG 153
             +  G
Sbjct: 88  --LEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
           G T L+  A  G+L  +K+L++   D+ N +D     P+  AA +GH +  + L  +  G
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL--LEAG 58

Query: 154 VDIYSG-NDG 162
            D+ +   +G
Sbjct: 59  ADVNAKDKNG 68

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL-PVIQAAYHGHKDTFQY 146
            Q DD G TALY     GN++ +K+ VK N  L               A          Y
Sbjct: 89  SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 147 LREVTHGVDIYSGNDG 162
              ++     +     
Sbjct: 148 F--LSEIPSTFDLAIL 161

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
            D  G++A Y      N+R +  L+       N  +  +  P+ QAA        + L  
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLLE--NEFPLHQAATLEDTKIVKIL-- 81

Query: 150 VTHGVDIYSGND 161
           +  G+D    +D
Sbjct: 82  LFSGLDDSQFDD 93

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQ-AAYHGHKDTFQYLR 148
              I  + ++     G++  + +L+ Y     N  ++L  +P I+ A  +   +  Q L 
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQAL- 214

Query: 149 EVTHGVDIYSGN 160
              + ++IYS N
Sbjct: 215 -FKYDINIYSAN 225

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 10/90 (11%), Positives = 24/90 (26%), Gaps = 11/90 (12%)

Query: 73  CLLDKLASKVDPQTLEQRDDIGY-TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLP 131
             + K                G+ T+ Y   +  ++  +   +   P        +    
Sbjct: 113 LFVKKNWRL------MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSC 164

Query: 132 VIQAAYHGHKDTFQYLREVTHGVDIYSGND 161
           +     +GH D    L  + +     + N 
Sbjct: 165 IHITIKNGHVDMMILL--LDYMTSTNTNNS 192

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 71  ATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL 130
              LLD  A       LE R+  G TAL+          +++L++   D+ +  D     
Sbjct: 95  LRALLDSAAPG--TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGR 151

Query: 131 -PVIQAAYHGHKDTFQYLREVTHGVDI 156
            P+I A  +      Q L  + HG ++
Sbjct: 152 SPLIHAVENNSLSMVQLL--LQHGANV 176

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLT---NKRDTLDSLPVIQAAYHGHKDTFQY 146
            D  G TA +      +   L+ L+      T     R+      +  A     ++T Q 
Sbjct: 75  LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL 134

Query: 147 LREVTHGVDI 156
           L  +  G DI
Sbjct: 135 L--LERGADI 142

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 91  DDIGYTALYQCAVKGNLRALKVLVKYNPDL---TNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           D+ G T L+   V+GNL A+  LV          +  + L   P+  A         + L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 148 REVTHGVDI 156
             VT G   
Sbjct: 66  --VTAGASP 72

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.4 bits (101), Expect = 8e-05
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
           G + L       +L  +++L+++  ++ N +    S  +  A+  G     + L  V  G
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTL--VRSG 206

Query: 154 VDI 156
            D 
Sbjct: 207 ADS 209

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +   G +AL+  + +G L  ++ LV+   D  + ++  +  P++ A      D  +  
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILRGK 235

Query: 148 REVTHG 153
              T  
Sbjct: 236 --ATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           L+  +++  T L+   +      +++LV          D         A  H      + 
Sbjct: 39  LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRA 97

Query: 147 LREVTHG 153
           L  +   
Sbjct: 98  L--LDSA 102

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.6 bits (109), Expect = 5e-06
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL-PVIQAAYHGHKDTFQY 146
           +  D+ G TAL   A  G+ + +++L +   DL + RD    L  +  AA +   +  + 
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 147 LREVTHGVDI 156
           L  V  G DI
Sbjct: 129 L--VELGADI 136

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 7/66 (10%)

Query: 91  DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
              G          G+  +         D+ ++ +T    P   AA    +     L   
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET----PWWTAARKADEQALSQL--- 63

Query: 151 THGVDI 156
               D+
Sbjct: 64  LEDRDV 69

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 74  LLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI 133
           LL   A     + L+ ++D+G TAL+  A+ G    ++ L      +    +      + 
Sbjct: 28  LLGFSA---GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALH 83

Query: 134 QAAYHGHKDTFQYLREVTHGVDI 156
            A           L  +      
Sbjct: 84  LACRVRAHTCACVL--LQPRPSH 104

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKY--NPDLTNKRDTLDSLPVIQAAYHGHKDTF 144
                + G TAL+   +  +   L  L+ +    +  + ++ L    +  AA  G   T 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 145 QYLREVTHGVDI 156
           + L     G  +
Sbjct: 62  EKL--YAAGAGV 71

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           LE  +  G+T L+   +  +   +++L     DL     T    P+  A         + 
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 147 LREVTHGVDIYSG-NDG 162
           L  +  G D  +    G
Sbjct: 211 L--LKAGADPTARMYGG 225

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           +     G T L+          L++L+K   D    R      P+  A    +    + L
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLL 244

Query: 148 REVTHGVDIYS-GNDG 162
           R   HG      G D 
Sbjct: 245 RA--HGAPEPEDGGDK 258

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL-PVIQAAYHGHKDTFQY 146
           +  D+ G TAL   A  G+ + +++L +   DL + RD    L  +  AA +   +  + 
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 147 LREVTHGVDI 156
           L  V  G DI
Sbjct: 130 L--VELGADI 137

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 7/66 (10%)

Query: 91  DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
              G          G+  +         D+ ++ +T    P   AA    +     L   
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET----PWWTAARKADEQALSQL--- 64

Query: 151 THGVDI 156
               D+
Sbjct: 65  LEDRDV 70

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.1 bits (108), Expect = 9e-06
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
              RD    T L    + G   A+  LV+    L   +D   S  +I A  +      + 
Sbjct: 28  RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEK 86

Query: 147 LREVTHGVDI 156
           L  ++ G ++
Sbjct: 87  L--LSKGSNV 94

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +D  G T L    + G       L+++  ++ N R+     P+I A+ +G  +  + L
Sbjct: 95  NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKL 153

Query: 148 REVTHGVDI 156
             +  G DI
Sbjct: 154 --LELGADI 160

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.9 bits (92), Expect = 9e-04
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             R+  G T L   +  G    +K L++   D+ + RD         A   G ++  +  
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIF 186

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.1 bits (108), Expect = 9e-06
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
           +       L     +   +  ++L      + ++ DT  + P+  A ++   +  + L  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKAL-- 58

Query: 150 VTHGVDI 156
           +  G DI
Sbjct: 59  IDRGADI 65

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           ++ D  G T L       ++   K L+    D+ N ++++   P + A   G  +   Y+
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYM 91

Query: 148 REVTHG-VDIYSGND 161
             + H   D+   N 
Sbjct: 92  --LKHATPDLNKHNR 104

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             ++ I  +       +G    L  ++K+     NK +      +I AA  GH D  + L
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125

Query: 148 REVTHG-VDIYSGND 161
             +  G  DI   ND
Sbjct: 126 --LEDGREDIDFQND 138

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 91  DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV 150
           D +G + L+  A  G+    +VL++      + R  +D  P+  AA  GH +  + L  +
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVL--L 87

Query: 151 THGVDI 156
            HG D+
Sbjct: 88  KHGADV 93

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
           R  +  T L+  A +G+   ++VL+K+  D+ N +D L    +  A  H H++  + L  
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELL-- 119

Query: 150 VTHGVDI 156
           + +G D+
Sbjct: 120 IKYGADV 126

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +D +  TAL+      +   +++L+KY  D+ + +          +  +G++D  + L
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

Query: 148 R 148
           +
Sbjct: 153 Q 153

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 89  QRDDIGYTALYQCAVKGNLRALKVLVKYNPDL----TNKRDTLDSLPVIQAAYHGHKDTF 144
           QR  +G TAL+  A+  NL A  VL++  P+L               +  A  + + +  
Sbjct: 32  QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91

Query: 145 QYLREVTHGVDIYSGNDGANMLSRLIDATLY 175
           + L  +  G  + +   G+    R  +   Y
Sbjct: 92  RAL--LARGASVSARATGSVFHYRPHNLIYY 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
           +D+ G T LY     G+L  ++VL+K   D+ N  D +   P+  AA+ GH +  + L  
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVL-- 99

Query: 150 VTHGVDI 156
           + HG D+
Sbjct: 100 LKHGADV 106

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
            D IG+T L+  A  G+L   +VL+K+  D+ N +D         +  +G++D  + L
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEIL 132

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
           +D  G   L+     G+    ++LVK+   + N  D     P+ +AA  G  +  + L  
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLL-- 127

Query: 150 VTHGVDI 156
           + HG D 
Sbjct: 128 LQHGADP 134

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.6 bits (99), Expect = 9e-05
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
               L + A  G++  +K L           +   S P+  AA +      +YL  + HG
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL--LQHG 65

Query: 154 VDI 156
            D+
Sbjct: 66  ADV 68

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
            +    T L+  A    +  ++ L+++  D+ + +D    +P+  A  +GH +  + L  
Sbjct: 38  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELL-- 94

Query: 150 VTHGVDI 156
           V HG  +
Sbjct: 95  VKHGAVV 101

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
            Q ++ G+T L+          +++L+++  D    R    + P + AA  G     +  
Sbjct: 33  FQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLF 91

Query: 148 REVTHGVDI 156
             ++ G D+
Sbjct: 92  --LSKGADV 98

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.8 bits (102), Expect = 9e-05
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLV-KYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
             R + G T L     K +L  ++ L+ + + ++ N  D+     ++ A     K   + 
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAEL 271

Query: 147 LREVTHGVDI 156
           L     G   
Sbjct: 272 L--CKRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 94  GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG 153
               L +     ++  ++ L++   ++  + +     P+  A     +D  + L  + HG
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL--LRHG 62

Query: 154 VDIYSGND 161
            D      
Sbjct: 63  ADPVLRKK 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL---------PVIQAAYH 138
            + D  G+TA  + AV G ++ALK L K   ++  +R T +            ++ AA  
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 139 GHKDTFQYLREVTH-GVDIYSGND 161
           GH +  + L  +   G D+ + ++
Sbjct: 159 GHVEVLKIL--LDEMGADVNACDN 180

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +D      L++ A  G+L+ +++L        N +D     P+  A   GH D    L
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

Query: 148 REVTHGVDI 156
            E  +G + 
Sbjct: 194 VE-KYGAEY 201

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL---PVIQAAYHGHKDTF 144
            Q+D  G   L+             L+    ++ N  D  D     P   A   G+ +  
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-NLDDYPDDSGWTPFHIACSVGNLEVV 88

Query: 145 QYLREVTHGVDIYSG-NDG 162
           + L +     D+    N G
Sbjct: 89  KSLYDRPLKPDLNKITNQG 107

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           L +  + G T L+    K      + L++    +   +D  + +P+ +AA  G     + 
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIEL 158

Query: 147 LREVTHG 153
           L     G
Sbjct: 159 L--CGLG 163

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 83  DPQTLEQRDDIGYTALYQCAVKGNLRALKVLV--KYNPDLTNKRDTLDSLPVIQAAYHGH 140
           +    +  DD G+T  +     GNL  +K L      PDL NK        +  A     
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKW 119

Query: 141 KDTFQYLREVTHGVDI 156
            +  Q+L  + +G  +
Sbjct: 120 FEVSQFL--IENGASV 133

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
            DD+G +AL+  A   N+ A  VL+K   +  + ++  +  P+  AA  G  +T + L  
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVL-- 209

Query: 150 VTHGVDI 156
           + H  + 
Sbjct: 210 LDHFANR 216

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
           L+ R   G T L   A       L+ L+  + D+ N  D L    +  AA   + D    
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVV 175

Query: 147 LREVTHGVDI 156
           L  + +G + 
Sbjct: 176 L--LKNGANK 183

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
           +++   T L+  A +G+    KVL+ +  +  +  D +D LP   A    H D  + L  
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLL-- 242

Query: 150 VTHGVDI 156
                  
Sbjct: 243 DLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 89  QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR 148
           Q D  G TAL+  A      A K L++ + D  N +D +   P+  A     +  FQ L 
Sbjct: 52  QTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQIL- 109

Query: 149 EVTHG-VDI 156
            + +   D+
Sbjct: 110 -IRNRATDL 117

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 15/82 (18%)

Query: 88  EQRDDIGYTALY-------------QCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQ 134
             R   G+T L                  +     +   +     L N+ D      +  
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 135 AAYHGHKDTFQYLREVTHGVDI 156
           AA +   D  + L  +    D 
Sbjct: 64  AARYSRSDAAKRL--LEASADA 83

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           + +D  G+  ++  A  G L  L+ L+++  D+ N  D   +LP+  AA  GH    ++L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 148 REVTHG 153
             V H 
Sbjct: 123 --VKHT 126

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.6 bits (99), Expect = 8e-05
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
              D+ G   L+  A +G+LR ++ LVK+       R+         A  +G  +    +
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

Query: 148 REVTHG 153
               +G
Sbjct: 157 --QANG 160

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
           +++   T L+  A +G+    KVL+ +  +  +  D +D LP   A    H D  + L E
Sbjct: 154 QNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDE 212

Query: 150 VTHGVDI 156
             + +  
Sbjct: 213 --YNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
            DD+G +AL+  A   N+ A  VL+K   +  + ++  +  P+  AA  G  +T + L  
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVL-- 177

Query: 150 VTHGVDI 156
           + H  + 
Sbjct: 178 LDHFANR 184

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 90  RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
           +D++G T L+           ++L++      + R    + P+I AA    +   + L  
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL-- 111

Query: 150 VTHGVDI 156
           +    D+
Sbjct: 112 INSHADV 118

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 89  QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR 148
           Q D  G TAL+  A      A K L++ + D  N +D +   P+  A     +  FQ L 
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQIL- 77

Query: 149 EVTHG-VDI 156
            + +   D+
Sbjct: 78  -IRNRATDL 85

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +DD G++ L+  A  G    +K L+     + N  +     P+  AA     +    L
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 148 REVTHGVDIYSGND 161
             +  G +  + + 
Sbjct: 126 --LEGGANPDAKDH 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.98
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.6e-32  Score=242.19  Aligned_cols=182  Identities=17%  Similarity=0.071  Sum_probs=168.9

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      .+..|.||||.|++.|+.++++.|++.+.+.  ...|..|+||||+|+..|+        .++++.|++.+ +..++.+|
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~~-~~~~~~~~  121 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADA--------QGVFQILIRNR-ATDLDARM  121 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTC--------HHHHHHHHHST-TSCTTCCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCC--------HHHHHHHHHcC-CCCccccC
Confidence            3678999999999999999999999986554  3448899999999999999        99999999998 55788999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      ..|.||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||.|+.
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~  199 (253)
T 1yyh_A          122 HDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAR  199 (253)
T ss_dssp             TTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             CCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHH
Confidence            99999999999999999999999998765 88999999999999999999999999999999886 99999999999999


Q ss_pred             hCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          172 ATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      .|+.++++.|++.+ .+.+.+|..|+||+|+|+++.
T Consensus       200 ~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g  234 (253)
T 1yyh_A          200 EGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERM  234 (253)
T ss_dssp             HTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcC
Confidence            99999999999987 888999999999999998874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.9e-31  Score=234.27  Aligned_cols=182  Identities=17%  Similarity=0.071  Sum_probs=168.3

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      .+..|.||||.|++.|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+ +..++.+|
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~~-~~~~~~~~   89 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADA--------QGVFQILIRNR-ATDLDARM   89 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHBT-TSCTTCCC
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCC--------HHHHHHHHHcC-CCCcccCC
Confidence            3678999999999999999999999986554  3458899999999999999        99999999998 55788999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      ..|.||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+..|+.+++++|++.+.+.+. +|.+|+||||.|+.
T Consensus        90 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~  167 (223)
T 2f8y_A           90 HDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAR  167 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHH
T ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCcCHHHHHHH
Confidence            99999999999999999999999998765 88999999999999999999999999999988886 99999999999999


Q ss_pred             hCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          172 ATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      .++.++++.|++.+ ...+.+|.+|.||+|+|+++.
T Consensus       168 ~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~  202 (223)
T 2f8y_A          168 EGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERM  202 (223)
T ss_dssp             HTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhc
Confidence            99999999999987 788899999999999998864

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.6e-31  Score=235.45  Aligned_cols=180  Identities=19%  Similarity=0.155  Sum_probs=98.5

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc-hhcCC
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ-RDDIG   94 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~-~d~~G   94 (368)
                      |+||||.|++.|+.+.++.|++..++.. ...|..|+||||+|+..|+        .++++.|++.+....+.. +|..|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~~~~~~~~~~~~~~g   72 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQA--------HEITSFLLSKMENVNLDDYPDDSG   72 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTCTTCCGGGCCCTTS
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcccc-ccCCCCCCCHHHHHHHcCC--------HHHHHHHHhccccccccccCCCCC
Confidence            4555555555555555555555555443 3335555555555555555        555555555542222233 45555


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhC--CCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh
Q 042244           95 YTALYQCAVKGNLRALKVLVKYN--PDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus        95 ~tpLh~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      +||||+|+..|+.+++++|++++  ++ .+.+|.+|+||||+|+..|+.+++++|++.+.+.+. +|.+|+||||.|+..
T Consensus        73 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~  150 (228)
T 2dzn_A           73 WTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASV  150 (228)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc-cCCCCCCHHHHHHHc
Confidence            55555555555555555555554  22 244555555555555555555555555555555444 555555555555555


Q ss_pred             CchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          173 TLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       173 ~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      |+.++++.|++.++...+.+|.+|+||+|+|++.
T Consensus       151 ~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~  184 (228)
T 2dzn_A          151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  184 (228)
T ss_dssp             TCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHc
Confidence            5555555555555455555555555555555544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.98  E-value=1.5e-31  Score=243.03  Aligned_cols=183  Identities=15%  Similarity=0.045  Sum_probs=153.9

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCc--ccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPD--ALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~--~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      .+..|.||||.|++.|+.++++.|++..++  .. ...|..|+||||+||..|+        .++++.|++++  ..++.
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--a~~~~   73 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL-DLQNDLGQTALHLAAILGE--------ASTVEKLYAAG--AGVLV   73 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG-GCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--CCSSC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-cccCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCCCC
Confidence            456789999999999999999999986443  34 4558889999999999999        99999999988  77888


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhhCCC----------------------------------------------Cccc
Q 042244           90 RDDIGYTALYQCAVKGNLRALKVLVKYNPD----------------------------------------------LTNK  123 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~----------------------------------------------~~~~  123 (368)
                      +|..|+||||+|+..|+.+++++|++.++.                                              .++.
T Consensus        74 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (282)
T 1oy3_D           74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA  153 (282)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC
T ss_pred             CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCC
Confidence            888999999999999999999999887543                                              1356


Q ss_pred             cCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccC-CCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHH
Q 042244          124 RDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSG-NDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNA  202 (368)
Q Consensus       124 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l  202 (368)
                      +|..|+||||+|+.+|+.+++++|++.+.+... ++ ..|+||||+|+..|+.++++.|++.+ .+.+.+|.+|+||||+
T Consensus       154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~  231 (282)
T 1oy3_D          154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-PEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGS  231 (282)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHH
Confidence            788899999999999999999999998888776 55 45999999999999999999999886 7888889999999999


Q ss_pred             HhcCC
Q 042244          203 LAEKP  207 (368)
Q Consensus       203 ~~~~~  207 (368)
                      |+++.
T Consensus       232 A~~~~  236 (282)
T 1oy3_D          232 ALLRP  236 (282)
T ss_dssp             HHTSS
T ss_pred             HHHcC
Confidence            88764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=2.8e-31  Score=234.84  Aligned_cols=181  Identities=17%  Similarity=0.083  Sum_probs=158.1

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhh----hch
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTL----EQR   90 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~----~~~   90 (368)
                      .|.||||.|++.|+.+.++.|++..+... ...|..|+||||+|+..|+        .++++.|++.+ +...    +.+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~~~-~~~~~~~~~~~   71 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDN--------LEAAMVLMEAA-PELVFEPMTSE   71 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHHC-GGGGGCCCCST
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCC--------HHHHHHHHHcC-chhcccccccc
Confidence            48899999999999999999999844334 4558999999999999999        99999999998 3321    567


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC-------------CCCcHHHHHHhhCCHHHHHHHHhhCCCCccc
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT-------------LDSLPVIQAAYHGHKDTFQYLREVTHGVDIY  157 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-------------~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~  157 (368)
                      |..|+||||+|+..|+.+++++|++++.+. +.++.             +|+||||+|+.+|+.+++++|++.+.+.+. 
T Consensus        72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-  149 (232)
T 2rfa_A           72 LYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA-  149 (232)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC-
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-
Confidence            789999999999999999999999998765 44443             799999999999999999999999998886 


Q ss_pred             cCCCCchHHHHHHHhCchHHH----HHHHHhCCccc-----ccCCCCCCcHHHHHhcCC
Q 042244          158 SGNDGANMLSRLIDATLYDVA----LDLLKLYPTIG-----RDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       158 ~~~~g~t~Lh~a~~~~~~~~~----~~Ll~~~~~~~-----~~~~~~g~Tpl~l~~~~~  207 (368)
                      +|.+|+||||+|+..++.+++    +.|++.+....     +.+|.+|+||+|+|+++.
T Consensus       150 ~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g  208 (232)
T 2rfa_A          150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG  208 (232)
T ss_dssp             CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence            999999999999999999988    88888874322     688999999999998864

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.98  E-value=1.4e-31  Score=235.87  Aligned_cols=184  Identities=13%  Similarity=0.044  Sum_probs=166.2

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcC--CcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTND--PDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~--p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      .+..|.||||.|+..|+.++++.|++..  ++.. ...+..|.||||+|+..|+        .++++.|++.+.+..++.
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~~~g~t~L~~A~~~~~--------~~~~~~Ll~~g~~~~~~~  102 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD-DYPDDSGWTPFHIACSVGN--------LEVVKSLYDRPLKPDLNK  102 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGG-GCCCTTSCCHHHHHHHHCC--------HHHHHHHHSSSSCCCTTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc-ccCCCCCCCHHHHHHHcCC--------HHHHHHHHhCCCCccccc
Confidence            5678999999999999999999999987  5443 3268899999999999999        999999999874466888


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhC-CCCccccCCCCchHHHH
Q 042244           90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVT-HGVDIYSGNDGANMLSR  168 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~  168 (368)
                      +|..|.||||+|+..|+.+++++|++++.+. +.+|..|+||||+|+.+|+.+++++|++.+ .+.+. +|.+|+||||.
T Consensus       103 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~d~~g~t~L~~  180 (228)
T 2dzn_A          103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW-QDKQGWTPLFH  180 (228)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCC-CCTTSCCHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccC-cCCCCCCHHHH
Confidence            9999999999999999999999999998765 889999999999999999999999999999 66665 89999999999


Q ss_pred             HHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          169 LIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       169 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      |+..|+.++++.|++..+.+.+.+|.+|+||+|+|.++
T Consensus       181 A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             HHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            99999999999999444489999999999999998654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.98  E-value=4.7e-32  Score=243.57  Aligned_cols=185  Identities=16%  Similarity=0.088  Sum_probs=141.2

Q ss_pred             hhhhccCChHHHHHHHhC-------------CHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHH
Q 042244           10 EDEYCARYWPLYRMIEKN-------------DWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLD   76 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G-------------~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~   76 (368)
                      +..+..|+||||.|+..|             +.++++.|++.+++.. ...|..|+||||+|+..|+        .++++
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~--------~~~v~   74 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSR--------SDAAK   74 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTC--------HHHHH
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-cccCCCCCcHHHHHHHcCC--------HHHHH
Confidence            345678999999999988             8999999999988765 5558899999999999999        99999


Q ss_pred             HHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc
Q 042244           77 KLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI  156 (368)
Q Consensus        77 ~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~  156 (368)
                      .|++.+  ..++.+|..|+||||+|+..|+.+++++|++.++...+.+|.+|+||||+|+..|+.+++++|++.+.+.+.
T Consensus        75 ~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  152 (253)
T 1yyh_A           75 RLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA  152 (253)
T ss_dssp             HHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC
T ss_pred             HHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC
Confidence            999998  778999999999999999999999999999998766689999999999999999999999999999998886


Q ss_pred             ccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          157 YSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       157 ~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                       +|.+|+||||.|+..|+.++++.|++.+ ...+.+|.+|+||+|+|+++.
T Consensus       153 -~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~  201 (253)
T 1yyh_A          153 -VDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREG  201 (253)
T ss_dssp             -BCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred             -cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCC
Confidence             9999999999999999999999999986 888999999999999998754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=3.1e-31  Score=229.21  Aligned_cols=181  Identities=15%  Similarity=0.145  Sum_probs=165.7

Q ss_pred             ccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcC
Q 042244           14 CARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDI   93 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~   93 (368)
                      ..+.||||.|+..|+.+.++.+++..+... ...|.+|.||||+|+..|+        .++++.|++.+  .+++.+|..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~~~   71 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNND--------IEIAKALIDRG--ADINLQNSI   71 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCTT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCCCCCCCC
Confidence            468899999999999999999999877444 5558899999999999999        99999999998  778999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhC-CCCccccCCCCchHHHHHHHh
Q 042244           94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVT-HGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus        94 G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      |+||||+|+..|+.+++++|++.+....+..|..|+||||+|+.+|+.+++++|++.+ .+.+. +|.+|+||||.|+..
T Consensus        72 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~  150 (201)
T 3hra_A           72 SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEAVGL  150 (201)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC-CCTTSCCHHHHHHHS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCCCHHHHHHHh
Confidence            9999999999999999999997776666899999999999999999999999999998 66665 999999999999999


Q ss_pred             Cc-----hHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          173 TL-----YDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       173 ~~-----~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ++     .++++.|++.+ .+.+.+|.+|+||+|+|+++.
T Consensus       151 ~~~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~  189 (201)
T 3hra_A          151 REGNQLYQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKG  189 (201)
T ss_dssp             SCCSHHHHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred             ccchhhHHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcC
Confidence            88     89999999987 888999999999999998753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.98  E-value=3.9e-31  Score=233.63  Aligned_cols=178  Identities=15%  Similarity=0.032  Sum_probs=119.3

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      +..|.||||.|+..|+.++++.|++.+.+.  ...|..|+||||+|+..|+        .++++.|++.+  ..++.+|.
T Consensus        37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~~  104 (231)
T 3aji_A           37 DQDSRTALHWACSAGHTEIVEFLLQLGVPV--NDKDDAGWSPLHIAASAGX--------DEIVKALLVKG--AHVNAVNQ  104 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCCC--CCcCCCCCCHHHHHHHcCH--------HHHHHHHHHcC--CCCCCCCC
Confidence            455667777777777777777776664433  2335666777777777777        77777777766  55666666


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      .|.||||+|+..|+.+++++|++++.+. +.+|..|+||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||.|+..
T Consensus       105 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~  182 (231)
T 3aji_A          105 NGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-QDTEGNTPLHLACDE  182 (231)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-cCCCCCCHHHHHHHC
Confidence            6777777777777777777777666543 56666677777777777777777777776666654 666777777777777


Q ss_pred             CchHHHHHHHHhCCcccccCCCCCCcHHHHHhc
Q 042244          173 TLYDVALDLLKLYPTIGRDNIDSRRIVLNALAE  205 (368)
Q Consensus       173 ~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~  205 (368)
                      ++.+++++|++.+ .+.+.+|.+|+||+|+|.+
T Consensus       183 ~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          183 ERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             TCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCH
T ss_pred             CCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHh
Confidence            7777777777664 5666667777777776644

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=2.9e-31  Score=235.40  Aligned_cols=181  Identities=18%  Similarity=0.065  Sum_probs=110.7

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      ++..|.||||.|+..|+.++++.|++.+.+.  ...+.+|.||||+|+..|+        .++++.|++.+  ..++.+|
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~   74 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPLMEAAENNH--------LEAVKYLIKAG--ALVDPKD   74 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTC--------HHHHHHHHTTT--CCCCCCC
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc--CccCCCCCCHHHHHHHhCC--------HHHHHHHHhCC--CCCCCCC
Confidence            3456777777777777777777777765443  3336667777777777777        66666666655  4455555


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      ..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+.+... +|.+|+||||.|+.
T Consensus        75 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~  153 (237)
T 3b7b_A           75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAF  153 (237)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHH
Confidence            56666666666666666666666655444455555666666666666666666666665555544 55556666666666


Q ss_pred             hCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          172 ATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      .|+.++++.|++.+ ...+.+|.+|.||+|+|++.
T Consensus       154 ~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~  187 (237)
T 3b7b_A          154 SGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAARE  187 (237)
T ss_dssp             HCCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHh
Confidence            66666666555554 45555555566666655554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=7.1e-31  Score=231.92  Aligned_cols=181  Identities=14%  Similarity=0.102  Sum_probs=168.5

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      ...+.+|||.|++.|+.+.++++++.++... ...|..|.||||+|+..|+        .++++.|++.+  ..++.+|.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--~~~~~~~~   71 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGH--------TEIVEFLLQLG--VPVNDKDD   71 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--CCSCCCCT
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCCHHHHHHHcCc--------HHHHHHHHHhC--CCCCCcCC
Confidence            3468899999999999999999999988776 6668999999999999999        99999999998  67889999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      .|+||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+..|+.+++++|++.+.+... .|..|.||||.|+..
T Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~  149 (231)
T 3aji_A           72 AGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAK  149 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHc
Confidence            9999999999999999999999998765 88899999999999999999999999999988876 899999999999999


Q ss_pred             CchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          173 TLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       173 ~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |+.++++.|++.+ ...+.+|.+|+||+|+|++..
T Consensus       150 ~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~  183 (231)
T 3aji_A          150 GNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEE  183 (231)
T ss_dssp             TCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCC
Confidence            9999999999976 888899999999999998864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=5.2e-31  Score=222.49  Aligned_cols=154  Identities=25%  Similarity=0.274  Sum_probs=144.4

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcH
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTA   97 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tp   97 (368)
                      ++|+.|++.|+.++|+.|++.+.+.  ...|.+|+||||+|+..++        .++++.|++.+  .+++.+|.+|+||
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv--n~~d~~g~t~l~~a~~~~~--------~~~~~~ll~~g--ad~~~~d~~g~Tp   73 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV--NASDSDGRTPLHHAAENGH--------KEVVKLLISKG--ADVNAKDSDGRTP   73 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCC--------HHHHHHHHhcc--cchhhhccCCCCH
Confidence            5799999999999999999986654  3458999999999999999        99999999998  7899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHH
Q 042244           98 LYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDV  177 (368)
Q Consensus        98 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~  177 (368)
                      ||+|+..|+.+++++|++++.++ +.+|.+|+||||+|+++|+.+++++|++.+.+.+. +|.+|+||||+|++.|+.++
T Consensus        74 Lh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~g~~~i  151 (169)
T 4gpm_A           74 LHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT-SDSDGRTPLDLAREHGNEEV  151 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999999775 89999999999999999999999999999999887 99999999999999999999


Q ss_pred             HHHHHHhC
Q 042244          178 ALDLLKLY  185 (368)
Q Consensus       178 ~~~Ll~~~  185 (368)
                      ++.|++.|
T Consensus       152 v~~Ll~~G  159 (169)
T 4gpm_A          152 VKLLEKQG  159 (169)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHHHCC
Confidence            99999987

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=243.71  Aligned_cols=183  Identities=18%  Similarity=0.155  Sum_probs=160.3

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcc-----------------------------------------cccccCC
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDA-----------------------------------------LTAKTIA   49 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~-----------------------------------------~~~~~~~   49 (368)
                      .+++.+.++|+.|++.|+.++|+.|++...+.                                         + ...|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC
Confidence            44556778888888888888888888642210                                         1 23467


Q ss_pred             CCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCC
Q 042244           50 PGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDS  129 (368)
Q Consensus        50 ~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~  129 (368)
                      +|+||||+||..|+        .++++.|++.+  ..++.++.+|.||+|.|+..++.++++.|++.+.++ +.+|.+|+
T Consensus        85 ~G~TpLh~A~~~g~--------~~~v~~Ll~~~--a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~  153 (269)
T 4b93_B           85 DGSSPLHVAALHGR--------ADLIPLLLKHG--ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGN  153 (269)
T ss_dssp             TSCCHHHHHHHTTC--------TTHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCC
T ss_pred             CCCCHHHHHHHcCc--------HHHHHHHHhcC--CCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCC
Confidence            89999999999999        99999999998  778899999999999999999999999999998765 88999999


Q ss_pred             cHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          130 LPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       130 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||+|+..|+.++++.|++.+ .+++.+|++|+||||+|+++.
T Consensus       154 TpL~~A~~~g~~~~v~~Ll~~gadvn~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          154 TPLIYACSGGHHELVALLLQHGASINA-SNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTC
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCCc-cccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCC
Confidence            999999999999999999999999886 9999999999999999999999999986 889999999999999997764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=9.4e-31  Score=232.05  Aligned_cols=184  Identities=17%  Similarity=0.141  Sum_probs=169.3

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      ...+..|.||||.|+..|+.++++.|++.+.+.  ...+..|.||||+|+..|+        .++++.|++.+ +..++.
T Consensus        38 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~~~~Ll~~~-~~~~~~  106 (237)
T 3b7b_A           38 DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV--DPKDAEGSTCLHLAAKKGH--------YEVVQYLLSNG-QMDVNC  106 (237)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC--CCCCTTSCCHHHHHHHTTC--------HHHHHHHHTTT-CCCTTC
T ss_pred             CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC--CCCCCCCCcHHHHHHHcCC--------HHHHHHHHhCC-CCCccc
Confidence            345667999999999999999999999986554  3458899999999999999        99999999998 777889


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH
Q 042244           90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL  169 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a  169 (368)
                      +|..|.||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+..|+.+++++|++.+.+.+. +|.+|+||||.|
T Consensus       107 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A  184 (237)
T 3b7b_A          107 QDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA-VNIHGDSPLHIA  184 (237)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTC-CCTTCCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHH
Confidence            9999999999999999999999999998775 88999999999999999999999999999998886 899999999999


Q ss_pred             HHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          170 IDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       170 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ++.++.++++.|++.+ .+.+.+|++|+||+|+|+++.
T Consensus       185 ~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          185 ARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             HHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTC
T ss_pred             HHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHH
Confidence            9999999999999986 888999999999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=6.5e-31  Score=238.74  Aligned_cols=185  Identities=12%  Similarity=-0.013  Sum_probs=152.9

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCc-----
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDP-----   84 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p-----   84 (368)
                      ...+..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+..     
T Consensus        39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~tpL~~A~~~~~--------~~~v~~Ll~~~~~~~~~~  108 (282)
T 1oy3_D           39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTALHLACRVRA--------HTCACVLLQPRPSHPRDA  108 (282)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTSCCHHHHHTTTTC--------HHHHHHHSSSCCSSCCCC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCC--------cchhHhhhccCCCCchhh
Confidence            345678999999999999999999999987654  3458899999999999999        9999999987611     


Q ss_pred             ----------------------------------------hhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCcccc
Q 042244           85 ----------------------------------------QTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKR  124 (368)
Q Consensus        85 ----------------------------------------~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  124 (368)
                                                              ..++.+|..|+||||+|+..|+.+++++|++++.++ +.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~  187 (282)
T 1oy3_D          109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKP  187 (282)
T ss_dssp             -----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCC
T ss_pred             HHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCC
Confidence                                                    125677889999999999999999999999999876 566


Q ss_pred             CC-CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHH
Q 042244          125 DT-LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNAL  203 (368)
Q Consensus       125 d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~  203 (368)
                      +. .|+||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||+|+..++.++++.|++.+ ...+.+|.+|.||++.+
T Consensus       188 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTA-RMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHTSSCHHHHHHHHHTT-CCCCCCC----------
T ss_pred             CCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc-cccCCCCHHHHHHHcCCcHHHHHHHHcC-CCcCcCCCccccccccc
Confidence            64 599999999999999999999999999887 9999999999999999999999999987 88999999999999998


Q ss_pred             hcCC
Q 042244          204 AEKP  207 (368)
Q Consensus       204 ~~~~  207 (368)
                      ....
T Consensus       266 ~~~~  269 (282)
T 1oy3_D          266 GSDS  269 (282)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            7754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=2.2e-30  Score=230.00  Aligned_cols=184  Identities=14%  Similarity=0.064  Sum_probs=157.3

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHc---CCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhh
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTN---DPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTL   87 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~---~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~   87 (368)
                      ..+..|.||||.|++.|+.++++.|++.   .+... ...|..|.||||+|+..|+        .++++.|++.+  ..+
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~   72 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTL--------PSVVRLLVTAG--ASP   72 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTT--CCT
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCC--------HHHHHHHHHcC--CCc
Confidence            4567899999999999999999999972   33333 4458889999999999999        99999999987  778


Q ss_pred             hchhcCCCcHHHHHHHcCCHHHHHHHHhhCCC---CccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccC-CCCc
Q 042244           88 EQRDDIGYTALYQCAVKGNLRALKVLVKYNPD---LTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSG-NDGA  163 (368)
Q Consensus        88 ~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~---~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-~~g~  163 (368)
                      +.+|..|+||||+|+..|+.+++++|++.++.   ..+..|..|+||||+|+..|+.+++++|++.+.+... .+ .+|.
T Consensus        73 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~g~  151 (241)
T 1k1a_A           73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA-VDIKSGR  151 (241)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTTCC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccccCCC
Confidence            88899999999999999999999999998762   3477888999999999999999999999999888776 55 7899


Q ss_pred             hHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          164 NMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       164 t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ||||.|+..|+.++++.|++.+ .+.+.+|.+|+||+|+|++..
T Consensus       152 t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~  194 (241)
T 1k1a_A          152 SPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRG  194 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999999999886 788888999999999987753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1.4e-30  Score=231.14  Aligned_cols=184  Identities=17%  Similarity=0.087  Sum_probs=165.6

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCc--hhh
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDP--QTL   87 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p--~~~   87 (368)
                      ...+..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+.+  ..+
T Consensus        40 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~--------~~~~~~Ll~~~~~~~~~~  109 (241)
T 1k1a_A           40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQTAAHLACEHRS--------PTCLRALLDSAAPGTLDL  109 (241)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHHSCTTSCCT
T ss_pred             CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHHHHHHcCC--------HHHHHHHHHcCCCccccc
Confidence            344567999999999999999999999986554  3448899999999999999        9999999999821  167


Q ss_pred             hchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccC-CCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHH
Q 042244           88 EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRD-TLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANML  166 (368)
Q Consensus        88 ~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  166 (368)
                      +.+|..|.||||+|+..|+.+++++|++.+.+. +..| ..|+||||+|+.+|+.+++++|++.+.+.+. +|.+|+|||
T Consensus       110 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L  187 (241)
T 1k1a_A          110 EARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-QMYSGSSAL  187 (241)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-BCTTSCBHH
T ss_pred             cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHH
Confidence            888999999999999999999999999998776 5566 7899999999999999999999999998886 999999999


Q ss_pred             HHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          167 SRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       167 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      |.|+..|+.++++.|++.+ .+.+.+|.+|+||+|+|+++
T Consensus       188 ~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~  226 (241)
T 1k1a_A          188 HSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSR  226 (241)
T ss_dssp             HHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSH
T ss_pred             HHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhc
Confidence            9999999999999999986 88899999999999998764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=9.9e-32  Score=238.61  Aligned_cols=184  Identities=15%  Similarity=0.020  Sum_probs=161.0

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCc---ccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhh
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPD---ALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTL   87 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~---~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~   87 (368)
                      ..+..|.||||.|+..|+.++++.|++..+.   .+ ...|..|.||||+|+..|+        .++++.|++.+  ..+
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~   71 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQ--------PEIAEALLGAG--CDP   71 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTC--------HHHHHCCCSCC--CCS
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHh-hccCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCC
Confidence            4567899999999999999999999987543   23 4558899999999999999        99999999998  778


Q ss_pred             hchhcCCCcHHHHHHHcCCHHHHHHHHhhCCC-----CccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCC-C
Q 042244           88 EQRDDIGYTALYQCAVKGNLRALKVLVKYNPD-----LTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGN-D  161 (368)
Q Consensus        88 ~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~-----~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~  161 (368)
                      +.+|..|+||||+|+..|+.+++++|++.+.+     ..+..|..|+||||+|+.+|+.+++++|++.+.+... ++. +
T Consensus        72 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~  150 (236)
T 1ikn_D           72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCN  150 (236)
T ss_dssp             CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTT
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCC
Confidence            89999999999999999999999999998753     3577888999999999999999999999999998886 776 9


Q ss_pred             CchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          162 GANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       162 g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |+||||+|+..|+.+++++|++.+ ...+.+|.+|+||+|+|+++.
T Consensus       151 g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~  195 (236)
T 1ikn_D          151 GRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRP  195 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccC
Confidence            999999999999999999999986 889999999999999988764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.9e-30  Score=218.95  Aligned_cols=170  Identities=10%  Similarity=-0.005  Sum_probs=151.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCC
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGY   95 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~   95 (368)
                      +.||||.|++.|+.+.++.+++..+... ...|..|.||||+|+..|+        .++++.|++.+  ..++.+|..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~~~g~   70 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLV-NKPDERGFTPLIWASAFGE--------IETVRFLLEWG--ADPHILAKERE   70 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGG-GCCCTTSCCHHHHHHHTTC--------HHHHHHHHHHT--CCTTCCCTTCC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccc-cCCCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCchhhcccCC
Confidence            4689999999999999999999988766 5668999999999999999        99999999998  77899999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCch
Q 042244           96 TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLY  175 (368)
Q Consensus        96 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~  175 (368)
                      ||||+|+..|+.+++++|++++.++ +.+|.+|+||||+|+..|+.+++++|++.+.+... +|.+|+||||+|+..++.
T Consensus        71 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~  148 (172)
T 3v30_A           71 SALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-EADSGYTPMDLAVALGYR  148 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHhCcH
Confidence            9999999999999999999998765 88999999999999999999999999999998886 999999999999999999


Q ss_pred             HHHHHHHHhCCcccccCCCCCCcH
Q 042244          176 DVALDLLKLYPTIGRDNIDSRRIV  199 (368)
Q Consensus       176 ~~~~~Ll~~~~~~~~~~~~~g~Tp  199 (368)
                      ++++.|++.+ .....+|..|.||
T Consensus       149 ~~~~~L~~~~-~~~~~~~~~~~~p  171 (172)
T 3v30_A          149 KVQQVIENHI-LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHH-HHHSCC-------
T ss_pred             HHHHHHHHHH-HHHhcccCCCCCC
Confidence            9999999987 6667777778776

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=8.7e-30  Score=233.03  Aligned_cols=181  Identities=12%  Similarity=0.074  Sum_probs=161.3

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      ...+..|+||||.|+..|+.++++.|++.+.+.  ...|.+|+||||+|+..|+        .++++.|++.+  ..++.
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--a~~~~  120 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV--NIITADHVSPLHEACLGGH--------LSCVKILLKHG--AQVNG  120 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS--CEECTTCCCHHHHHHHTTC--------HHHHHHHHHTT--CCSSC
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHCCc--------HHHHHHHHHCC--CCCCC
Confidence            346778999999999999999999999986654  4458899999999999999        99999999998  77889


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH
Q 042244           90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL  169 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a  169 (368)
                      +|..|+||||+|+..|+.+++++|++.+.+. + .+.+|.||||+|+..|+.+++++|++.+.+.+. +|.+|+||||.|
T Consensus       121 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A  197 (285)
T 3d9h_A          121 VTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDH-KISHLGTPLYLA  197 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTC-CBTTTBCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHH
Confidence            9999999999999999999999999998765 3 345699999999999999999999999988876 899999999999


Q ss_pred             HHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          170 IDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       170 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      +..|+.++++.|++.+ ...+ .|.+|+||||+|++..
T Consensus       198 ~~~~~~~~v~~Ll~~g-a~~~-~~~~g~t~L~~A~~~~  233 (285)
T 3d9h_A          198 CENQQRACVKKLLESG-ADVN-QGKGQDSPLHAVVRTA  233 (285)
T ss_dssp             HHTTCHHHHHHHHHTT-CCTT-CCBTTBCHHHHHHHTT
T ss_pred             HHcCcHHHHHHHHHCC-CCCC-CCCCCCCHHHHHHHcC
Confidence            9999999999999886 5555 4888999999998864

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=2.7e-30  Score=237.06  Aligned_cols=179  Identities=14%  Similarity=0.088  Sum_probs=154.7

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      .+..|.||||.|+..|+.+.++.|++.+.+.  ...|.+|.||||+||..|+        .++++.|++.+  ..++.+|
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--a~~~~~~  103 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQACIDDN--------VDMVKFLVENG--ANINQPD  103 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCT--TCBCTTCCBHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCC
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCC--------HHHHHHHHHCC--CCCCCCC
Confidence            4567889999999999999999999987664  4458899999999999999        99999999988  7788999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccc------------------------------------------------
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNK------------------------------------------------  123 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------------------------------------------------  123 (368)
                      ..|+||||+|+..|+.+++++|++++.+. +.                                                
T Consensus       104 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  182 (299)
T 1s70_B          104 NEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR  182 (299)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHH
Confidence            99999999999999999999999987543 22                                                


Q ss_pred             ------------cCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCccccc
Q 042244          124 ------------RDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRD  191 (368)
Q Consensus       124 ------------~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~  191 (368)
                                  .+..|.||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||+|+..|+.++++.|++.+ .+.+.
T Consensus       183 ~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~  260 (299)
T 1s70_B          183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAAAHWGKEEACRILVENL-CDMEA  260 (299)
T ss_dssp             HHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred             HHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCC
Confidence                        234678888889999999999999988888776 8888999999999999999999888886 77888


Q ss_pred             CCCCCCcHHHHHhc
Q 042244          192 NIDSRRIVLNALAE  205 (368)
Q Consensus       192 ~~~~g~Tpl~l~~~  205 (368)
                      +|..|+||+|+|.+
T Consensus       261 ~d~~g~t~l~~A~~  274 (299)
T 1s70_B          261 VNKVGQTAFDVADE  274 (299)
T ss_dssp             CCTTSCCTTTSCCS
T ss_pred             cCCCCCCHHHHHHH
Confidence            88999999998755

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=3.9e-30  Score=235.34  Aligned_cols=179  Identities=12%  Similarity=0.109  Sum_probs=161.8

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ..+..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+  ..++. 
T Consensus        87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~-  153 (285)
T 3d9h_A           87 IITADHVSPLHEACLGGHLSCVKILLKHGAQV--NGVTADWHTPLFNACVSGS--------WDCVNLLLQHG--ASVQP-  153 (285)
T ss_dssp             EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS--SCCCTTCCCHHHHHHHHTC--------HHHHHHHHHTT--CCSSC-
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCH--------HHHHHHHHHCC--CCCCC-
Confidence            45667999999999999999999999986554  3458899999999999999        99999999998  44443 


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      +.+|.||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+.+|+.+++++|++.+.+.+  .|.+|+||||+|+
T Consensus       154 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~  230 (285)
T 3d9h_A          154 ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVV  230 (285)
T ss_dssp             SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHH
Confidence            455999999999999999999999998765 8899999999999999999999999999988875  5889999999999


Q ss_pred             HhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          171 DATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       171 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      ..++.+++++|++.+ .+.+.+|.+|+||+|+|+++
T Consensus       231 ~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          231 RTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSCTT
T ss_pred             HcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHhcCc
Confidence            999999999999986 88999999999999999854

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.3e-29  Score=236.97  Aligned_cols=183  Identities=16%  Similarity=0.030  Sum_probs=124.6

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      ...+..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+  ..++.
T Consensus        52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~--------~~iv~~Ll~~g--~~~~~  119 (351)
T 3utm_A           52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPLHNACSYGH--------YEVTELLLKHG--ACVNA  119 (351)
T ss_dssp             CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTC
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHCCC--------HHHHHHHHHCC--CCCCC
Confidence            344567899999999999999999999886554  3448889999999999999        88889888887  66788


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCc------------------------------------------------
Q 042244           90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLT------------------------------------------------  121 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~------------------------------------------------  121 (368)
                      +|..|.||||+|+..|+.+++++|++++.+..                                                
T Consensus       120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  199 (351)
T 3utm_A          120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA  199 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHH
Confidence            88888888888888888888888888754320                                                


Q ss_pred             -----cccCCCCCcHHHHHHhh---CCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCC
Q 042244          122 -----NKRDTLDSLPVIQAAYH---GHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNI  193 (368)
Q Consensus       122 -----~~~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~  193 (368)
                           ...+..|+||||+|+..   +..+++++|++.+.+.+. +|.+|+||||.|+..|+.++++.|++.+ .+.+.+|
T Consensus       200 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d  277 (351)
T 3utm_A          200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALD  277 (351)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             hhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcC
Confidence                 01223445555555555   234555555555555443 5555555555555555555555555544 5555555


Q ss_pred             CCCCcHHHHHhcC
Q 042244          194 DSRRIVLNALAEK  206 (368)
Q Consensus       194 ~~g~Tpl~l~~~~  206 (368)
                      ..|+||||+|++.
T Consensus       278 ~~g~t~L~~A~~~  290 (351)
T 3utm_A          278 SLGQTALHRAALA  290 (351)
T ss_dssp             TTSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHc
Confidence            5555555555443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=6.7e-30  Score=241.45  Aligned_cols=190  Identities=17%  Similarity=0.164  Sum_probs=152.3

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCccccc----------------------
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVES----------------------   68 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~----------------------   68 (368)
                      ..+..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+||..|+.++++                      
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~   92 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAV   92 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHH
Confidence            34455677777777777777777777764433  233666777777777777744430                      


Q ss_pred             -CChHHHHHHHHhc----CCchhhhc-----------------hhcCCCcHHHHHHHcC--CHHHHHHHHhhCCCCcccc
Q 042244           69 -DDATCLLDKLASK----VDPQTLEQ-----------------RDDIGYTALYQCAVKG--NLRALKVLVKYNPDLTNKR  124 (368)
Q Consensus        69 -~~~~~~v~~Ll~~----~~p~~~~~-----------------~d~~G~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~  124 (368)
                       .|+.++++.|++.    +  ..++.                 +|..|.||||+|+..|  +.+++++|++.+.++ +.+
T Consensus        93 ~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~  169 (364)
T 3ljn_A           93 MANKTDLVVALVEGAKERG--QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAK  169 (364)
T ss_dssp             HTTCHHHHHHHHHHHHHHT--CCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCC
T ss_pred             HcCCHHHHHHHHHhccccC--CCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-ccc
Confidence             1336777777766    3  22333                 8889999999999999  999999999998765 889


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhhCCC-----CccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcH
Q 042244          125 DTLDSLPVIQAAYHGHKDTFQYLREVTHG-----VDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIV  199 (368)
Q Consensus       125 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tp  199 (368)
                      |.+|+||||+|+.+|+.+++++|++.+.+     .+. .|.+|+||||+|+..|+.++++.|++.+ .+.+.+|.+|.||
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tp  247 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY-ANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVP  247 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC-CCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCH
Confidence            99999999999999999999999999887     555 8999999999999999999999999986 8889999999999


Q ss_pred             HHHHhcCC
Q 042244          200 LNALAEKP  207 (368)
Q Consensus       200 l~l~~~~~  207 (368)
                      ||+|++..
T Consensus       248 L~~A~~~g  255 (364)
T 3ljn_A          248 LYLSVRAA  255 (364)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99998874

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4.9e-30  Score=230.47  Aligned_cols=179  Identities=17%  Similarity=0.110  Sum_probs=153.7

Q ss_pred             cCChHHHHHHHhCCHHHHH----HHHHcCCccccc---ccCCCCCcHHHHHHHc---CCcccccCChHHHHHHHHhcCCc
Q 042244           15 ARYWPLYRMIEKNDWRGVE----DFVTNDPDALTA---KTIAPGSMTIFHAIVE---LWVDVESDDATCLLDKLASKVDP   84 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~----~Ll~~~p~~~~~---~~~~~g~tpLh~A~~~---g~~~~~~~~~~~~v~~Ll~~~~p   84 (368)
                      .|.||||.|++.|+.+.++    .+++.+.+.. .   ..|..|+||||+|+..   |+        .++++.|++.+  
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~-~~~~~~d~~g~t~L~~A~~~~~~g~--------~~~v~~Ll~~g--   69 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLT-DSAYTEGSTGKTCLMKAVLNLQDGV--------NACIMPLLQID--   69 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTT-SGGGSBTTTTBCHHHHHHHTCBTTB--------CTTHHHHHHHH--
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCHHHHHHHccccch--------HHHHHHHHhcC--
Confidence            4789999999999998554    4444554432 2   2588999999999999   99        99999999987  


Q ss_pred             hhhh-----------chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCC-------------CCcHHHHHHhhCC
Q 042244           85 QTLE-----------QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTL-------------DSLPVIQAAYHGH  140 (368)
Q Consensus        85 ~~~~-----------~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------G~tpLh~Aa~~g~  140 (368)
                      ...+           .+|..|+||||+|+..|+.+++++|++++.++ +.+|..             |+||||+|+..|+
T Consensus        70 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~  148 (256)
T 2etb_A           70 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQ  148 (256)
T ss_dssp             HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred             CcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCC
Confidence            4433           23478999999999999999999999998775 677765             9999999999999


Q ss_pred             HHHHHHHHh---hCCCCccccCCCCchHHHHHHH--hCchH-------HHHHHHHhCCccc-------ccCCCCCCcHHH
Q 042244          141 KDTFQYLRE---VTHGVDIYSGNDGANMLSRLID--ATLYD-------VALDLLKLYPTIG-------RDNIDSRRIVLN  201 (368)
Q Consensus       141 ~~~v~~Ll~---~~~~~~~~~~~~g~t~Lh~a~~--~~~~~-------~~~~Ll~~~~~~~-------~~~~~~g~Tpl~  201 (368)
                      .+++++|++   .+.+.+. +|.+|+||||+|+.  .++.+       +++.|++.+ .+.       +.+|.+|+||+|
T Consensus       149 ~~~v~~Ll~~~~~ga~~n~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          149 WDVVTYLLENPHQPASLEA-TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             HHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHHHHhccccCCCcCc-cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHH
Confidence            999999999   8888876 99999999999999  77888       999999987 666       889999999999


Q ss_pred             HHhcCC
Q 042244          202 ALAEKP  207 (368)
Q Consensus       202 l~~~~~  207 (368)
                      +|+++.
T Consensus       227 ~A~~~g  232 (256)
T 2etb_A          227 LAAKEG  232 (256)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            998874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=3.1e-30  Score=236.06  Aligned_cols=180  Identities=18%  Similarity=0.062  Sum_probs=162.6

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      ...+..|.||||.|+..|+.++++.|++.+.+..    ..+|+||||+|+..|+        .++++.|++.+  ..++.
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----~~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--a~~~~   90 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKN----LLENEFPLHQAATLED--------TKIVKILLFSG--LDDSQ   90 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS----CCTTCCHHHHHTTSSS--------CHHHHHHHHTT--CCTTC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC----CCCCCCHHHHHHHcCC--------HHHHHHHHHCC--CCCCC
Confidence            4556789999999999999999999999976653    2259999999999999        99999999998  77889


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCC-CcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHH
Q 042244           90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLD-SLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSR  168 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  168 (368)
                      +|..|+||||+|+..|+.+++++|++++.+. +.+|..| +||||+|+..|+.+++++|++.+++..  ...+|+||||.
T Consensus        91 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~  167 (285)
T 3kea_A           91 FDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHI  167 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cccCCccHHHH
Confidence            9999999999999999999999999998765 8899999 899999999999999999999987762  22399999999


Q ss_pred             HHHhCchHHHHHHHHhCCcccccCCCCCCcH-HHHHhcCC
Q 042244          169 LIDATLYDVALDLLKLYPTIGRDNIDSRRIV-LNALAEKP  207 (368)
Q Consensus       169 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tp-l~l~~~~~  207 (368)
                      |+..|+.++++.|++.+ .+.+.+|.+|+|| +|+|++..
T Consensus       168 A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~  206 (285)
T 3kea_A          168 TIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNK  206 (285)
T ss_dssp             HHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHT
T ss_pred             HHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcC
Confidence            99999999999999986 8899999999998 99998754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=4.8e-29  Score=226.16  Aligned_cols=181  Identities=18%  Similarity=0.129  Sum_probs=143.0

Q ss_pred             ccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch---
Q 042244           14 CARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR---   90 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~---   90 (368)
                      ..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+  ..++..   
T Consensus        70 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~~~~Ll~~g--~~~~~~~~~  137 (285)
T 1wdy_A           70 KNGATPFLLAAIAGSVKLLKLFLSKGADV--NECDFYGFTAFMEAAVYGK--------VKALKFLYKRG--ANVNLRRKT  137 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCT--TCBCTTCCBHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCcccCCHHHHHHHhCC--------HHHHHHHHHhC--CCccccccc
Confidence            34445555555555555555555543332  2224455555555555555        88888888887  444444   


Q ss_pred             -------hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCC----HHHHHHHHhhCCCCccccC
Q 042244           91 -------DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGH----KDTFQYLREVTHGVDIYSG  159 (368)
Q Consensus        91 -------d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~~  159 (368)
                             |..|.||||+|+..|+.+++++|++.....++.+|..|+||||+|+..++    .+++++|++.+.+.+. +|
T Consensus       138 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~-~~  216 (285)
T 1wdy_A          138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RG  216 (285)
T ss_dssp             CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC-CC
T ss_pred             HHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC-cC
Confidence                   78899999999999999999999998444558899999999999999999    8999999999998886 99


Q ss_pred             CCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          160 NDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       160 ~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      .+|+||||.|++.|+.++++.|++..+...+.+|.+|+||+|+|++..
T Consensus       217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            999999999999999999999999666899999999999999998864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=6.2e-29  Score=225.44  Aligned_cols=182  Identities=16%  Similarity=0.145  Sum_probs=161.0

Q ss_pred             ccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcC
Q 042244           14 CARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDI   93 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~   93 (368)
                      .+|.||||.|++.|+.+.++.|++.+++.. ...+..|+||||+|+..|+        .++++.|++.+  ..++.+|..
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--~~~~~~~~~   71 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSR--------EDIVELLLRHG--ADPVLRKKN   71 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCCTT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCcHHHHHHHcCC--------HHHHHHHHHcC--CCCcccCCC
Confidence            457899999999999999999999877664 4447789999999999999        99999999998  678888999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcccc----------CCCCc
Q 042244           94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYS----------GNDGA  163 (368)
Q Consensus        94 G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~----------~~~g~  163 (368)
                      |.||||+|+..|+.+++++|++++.+. +.+|..|+||||+|+..|+.+++++|++.+.+... .          +..|.
T Consensus        72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~~~~~~~~~g~  149 (285)
T 1wdy_A           72 GATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL-RRKTKEDQERLRKGGA  149 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCCCHHHHHTTCCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccc-ccccHHHHHhhccCCC
Confidence            999999999999999999999998765 78899999999999999999999999999887665 3          78899


Q ss_pred             hHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCCC
Q 042244          164 NMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPY  208 (368)
Q Consensus       164 t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~~  208 (368)
                      ||||.|+..|+.+++++|++..+...+.+|..|.||+|.++....
T Consensus       150 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  194 (285)
T 1wdy_A          150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD  194 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC
T ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc
Confidence            999999999999999999988668888999999999999887643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=4.9e-29  Score=220.56  Aligned_cols=183  Identities=15%  Similarity=0.043  Sum_probs=157.6

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ..+..|.||||.|++.|+.++++.|++..++.. ...+..|.||||+|+..|+        .++++.|++.+  ..++.+
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~  105 (240)
T 3eu9_A           37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQGH--------LSMVVQLMKYG--ADPSLI  105 (240)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTTBCHHHHHHHHTC--------HHHHHHHHHTT--CCTTCC
T ss_pred             CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch-hhcCCcCCChhHHHHHcCC--------HHHHHHHHHcC--CCCccc
Confidence            345678899999999999999999998877654 4445668899999999999        99999999987  677888


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCC-HHHHHHHHhhCCCCccccCC-CCchHHHH
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGH-KDTFQYLREVTHGVDIYSGN-DGANMLSR  168 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~-~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~  168 (368)
                      |..|.||||+|+..|+.+++++|++++.+. +.+|.+|.||||+|+.+++ .+++++|++.+.+... .+. +|+||||.
T Consensus       106 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~-~~~~~g~t~L~~  183 (240)
T 3eu9_A          106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKNTALHW  183 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTC-CCTTTCCCHHHH
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcch-hhccCCCcHHHH
Confidence            899999999999999999999999988664 7888899999999997776 7889999998888776 555 89999999


Q ss_pred             HHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          169 LIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       169 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |+..|+.+++++|++.+ ...+.+|.+|+||+|+|++..
T Consensus       184 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          184 AVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             HHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999987 888899999999999998864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=6.2e-30  Score=232.13  Aligned_cols=186  Identities=14%  Similarity=0.145  Sum_probs=155.3

Q ss_pred             chhhhccCChHHHHHHHhCCHHHHHHHHHc----CCccc--ccccCCCCCcHHHHHHHc---CCcccccCChHHHHHHHH
Q 042244            9 EEDEYCARYWPLYRMIEKNDWRGVEDFVTN----DPDAL--TAKTIAPGSMTIFHAIVE---LWVDVESDDATCLLDKLA   79 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~----~p~~~--~~~~~~~g~tpLh~A~~~---g~~~~~~~~~~~~v~~Ll   79 (368)
                      .++.+..|.||||.|++.|+.+.++.|++.    +.+..  ....|..|+||||+|+..   |+        .++++.|+
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~--------~~~v~~Ll   77 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ--------NDTIALLL   77 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTB--------CHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCC--------hHHHHHHH
Confidence            345678899999999999999999999974    22211  113478999999999987   88        99999999


Q ss_pred             hcCCchh-------hh----chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC--------------CCCcHHHH
Q 042244           80 SKVDPQT-------LE----QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT--------------LDSLPVIQ  134 (368)
Q Consensus        80 ~~~~p~~-------~~----~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------------~G~tpLh~  134 (368)
                      +.+  ..       ++    .+|..|+||||+|+..|+.+++++|++++.++ +.+|.              .|+||||+
T Consensus        78 ~~g--a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~  154 (273)
T 2pnn_A           78 DVA--RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSL  154 (273)
T ss_dssp             HHH--HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHH
T ss_pred             Hhh--ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHH
Confidence            987  32       22    26678999999999999999999999998765 66665              79999999


Q ss_pred             HHhhCCHHHHHHHHh---hCCCCccccCCCCchHHHHHHHhCc---------hHHHHHHHHhCCcccc-------cCCCC
Q 042244          135 AAYHGHKDTFQYLRE---VTHGVDIYSGNDGANMLSRLIDATL---------YDVALDLLKLYPTIGR-------DNIDS  195 (368)
Q Consensus       135 Aa~~g~~~~v~~Ll~---~~~~~~~~~~~~g~t~Lh~a~~~~~---------~~~~~~Ll~~~~~~~~-------~~~~~  195 (368)
                      |+.+|+.+++++|++   .+.+.+. +|.+|+||||+|+..++         .++++.|++.+ ...+       .+|.+
T Consensus       155 A~~~g~~~~v~~Ll~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~  232 (273)
T 2pnn_A          155 AACTNQLAIVKFLLQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRK  232 (273)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTT
T ss_pred             HHHcCCHHHHHHHHhcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCC
Confidence            999999999999999   8888876 99999999999999888         78999999886 5553       58999


Q ss_pred             CCcHHHHHhcCC
Q 042244          196 RRIVLNALAEKP  207 (368)
Q Consensus       196 g~Tpl~l~~~~~  207 (368)
                      |+||||+|++..
T Consensus       233 g~TpL~~A~~~g  244 (273)
T 2pnn_A          233 GLTPLALAASSG  244 (273)
T ss_dssp             SCCHHHHHHHTT
T ss_pred             CCCHHHHHHHhC
Confidence            999999998874

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=5.6e-29  Score=240.74  Aligned_cols=179  Identities=17%  Similarity=0.124  Sum_probs=128.5

Q ss_pred             ccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcC
Q 042244           14 CARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDI   93 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~   93 (368)
                      ..|.||||.|+..|+.++++.|++.+.+.  ...+..|.||||+|+..|+        .++++.|++.+  ..++.+|..
T Consensus       210 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~~~--~~~~~~~~~  277 (437)
T 1n11_A          210 WNGYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAAQEGH--------AEMVALLLSKQ--ANGNLGNKS  277 (437)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTC--------HHHHHHHHTTT--CCTTCCCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHCCC--------HHHHHHHHhcC--CCCCCCCCC
Confidence            34556666666666666666666554332  2235566666666666666        77777777776  556777777


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhC
Q 042244           94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDAT  173 (368)
Q Consensus        94 G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~  173 (368)
                      |.||||+|+..|+.+++++|++++.++ +.+|..|+||||+|+.+|+.+++++|++.+.+.+. +|..|+||||.|+..|
T Consensus       278 g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~L~~A~~~g  355 (437)
T 1n11_A          278 GLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQAAQQG  355 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHCC
Confidence            778888888778888888887776554 67777788888888888888888888887777765 7777888888888888


Q ss_pred             chHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          174 LYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       174 ~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      +.+++++|++.+ ...+.+|.+|+||+++|.+..
T Consensus       356 ~~~iv~~Ll~~g-a~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          356 HTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             CHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTT
T ss_pred             hHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcC
Confidence            888888888765 777777888888888876653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=3.7e-29  Score=237.59  Aligned_cols=185  Identities=14%  Similarity=0.093  Sum_probs=165.0

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCc--hhh
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDP--QTL   87 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p--~~~   87 (368)
                      +..+..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+ +  ..+
T Consensus       160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~--~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~~~-~~~~~~  228 (373)
T 2fo1_E          160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP--TIYNKSERSALHQAAANRD--------FGMMVYMLNST-KLKGDI  228 (373)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTCCCHHHHHHHTTC--------HHHHHHHTTSH-HHHHTT
T ss_pred             cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC--cccCCCCCCHHHHHHHCCC--------HHHHHHHHhcC-ccccCh
Confidence            345678999999999999999999999986654  3458899999999999999        99999999986 3  467


Q ss_pred             hchhcCCCcHHHHHHHcC---CHHHHHHHHhhCCCCc-------cccCCCCCcHHHHHHhhCCHHHHHHHHhhC-CCCcc
Q 042244           88 EQRDDIGYTALYQCAVKG---NLRALKVLVKYNPDLT-------NKRDTLDSLPVIQAAYHGHKDTFQYLREVT-HGVDI  156 (368)
Q Consensus        88 ~~~d~~G~tpLh~A~~~g---~~~~v~~Ll~~~~~~~-------~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~  156 (368)
                      +.+|..|.||||+|+..|   +.+++++|++.+.+..       +..|..|+||||+|+.+|+.+++++|++.+ .+.+.
T Consensus       229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~  308 (373)
T 2fo1_E          229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  308 (373)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence            889999999999999998   8999999999987652       236779999999999999999999999987 66665


Q ss_pred             ccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          157 YSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       157 ~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                       +|.+|+||||+|+..|+.++++.|++.+ .+.+.+|.+|+||+|+|+++.
T Consensus       309 -~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g  357 (373)
T 2fo1_E          309 -QDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANN  357 (373)
T ss_dssp             -CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTT
T ss_pred             -cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcC
Confidence             9999999999999999999999999986 889999999999999998864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=4.4e-29  Score=209.59  Aligned_cols=157  Identities=15%  Similarity=0.101  Sum_probs=146.8

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCC
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIG   94 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G   94 (368)
                      .|.||||.|++.|+.+.++.|++..++.  ...|..|.||||+|+..|+        .++++.|++.+  ..++.+|..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~~~g   69 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI--NHTDEEGFTPLMWAAAHGQ--------IAVVEFLLQNG--ADPQLLGKGR   69 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCCTTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc--CCCCCCCCCHHHHHHHCCC--------HHHHHHHHHcC--CCCCCcCCCC
Confidence            5789999999999999999999987554  4558899999999999999        99999999998  7788999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCc
Q 042244           95 YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATL  174 (368)
Q Consensus        95 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~  174 (368)
                      .||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+..|+.+++++|++.+.+... +|.+|+||||+|+..|+
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           70 ESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCc
Confidence            99999999999999999999998765 88999999999999999999999999999998886 99999999999999999


Q ss_pred             hHHHHHHHHhC
Q 042244          175 YDVALDLLKLY  185 (368)
Q Consensus       175 ~~~~~~Ll~~~  185 (368)
                      .++++.|++++
T Consensus       148 ~~~~~~L~~~~  158 (167)
T 3v31_A          148 RSVQQVIESHL  158 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=3.5e-29  Score=215.16  Aligned_cols=160  Identities=17%  Similarity=0.117  Sum_probs=145.1

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      .+..|.||||.|+..|+.++++.|++..++.  ...|..|.||||+|+..|+        .++++.|++.+  ..++.+|
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~   98 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDKL--EDKDIEGSTALIWAVKNNR--------LGIAEKLLSKG--SNVNTKD   98 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHHT--CCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhcccc--ccccccCccHHHHHHHcCC--------HHHHHHHHHCC--CCCCCCC
Confidence            4667999999999999999999999986554  3448889999999999999        99999999998  6788999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      ..|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++.+.+... +|.+|.||||+|+.
T Consensus        99 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~  176 (192)
T 2rfm_A           99 FSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISA-RDLTGLTAEASARI  176 (192)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHH
Confidence            99999999999999999999999998765 88999999999999999999999999999988876 89999999999999


Q ss_pred             hCchHHHHHHHHhC
Q 042244          172 ATLYDVALDLLKLY  185 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~  185 (368)
                      .|+.+++++|++.+
T Consensus       177 ~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          177 FGRQEVIKIFTEVR  190 (192)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHhcc
Confidence            99999999998764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=1.4e-28  Score=237.90  Aligned_cols=183  Identities=16%  Similarity=0.038  Sum_probs=159.7

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      ...+.+|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+  ..++.
T Consensus         8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~~~~~~t~L~~A~~~g~--------~~~v~~Ll~~g--~~~~~   75 (437)
T 1n11_A            8 GGGGESGLTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGH--------TEVAKYLLQNK--AKVNA   75 (437)
T ss_dssp             -------CCHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTC--------HHHHHHHHHHT--CCSSC
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCC--------HHHHHHHHhCC--CCCCC
Confidence            345678999999999999999999999985544  3347889999999999999        99999999998  77888


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH
Q 042244           90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL  169 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a  169 (368)
                      +|.+|+||||+|+..|+.+++++|++++.+. +..|..|+||||+|+..|+.+++++|++.+.+... .+.+|.||||.|
T Consensus        76 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A  153 (437)
T 1n11_A           76 KAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVA  153 (437)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCCHHHHH
Confidence            9999999999999999999999999998765 78899999999999999999999999999887765 888999999999


Q ss_pred             HHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          170 IDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       170 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      +..|+.+++++|++.+ ...+..+.+|.||+|.|+...
T Consensus       154 ~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~  190 (437)
T 1n11_A          154 AKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHN  190 (437)
T ss_dssp             HHTTCHHHHHHHHHTT-CCTTCCCSSCCCHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcC
Confidence            9999999999999886 778888999999999998764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.9e-28  Score=206.43  Aligned_cols=160  Identities=23%  Similarity=0.187  Sum_probs=145.4

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      ....+.++||.|++.|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+  ..++.+|
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~   77 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPLHLAAFNGH--------LEIVEVLLKNG--ADVNAVD   77 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCC
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCCCccC
Confidence            4556789999999999999999999987665  3458899999999999999        99999999998  7788999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      ..|+||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+..|+.+++++|++++.+... +|.+|+||||+|+.
T Consensus        78 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~  155 (169)
T 2y1l_E           78 HAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA-QDKFGKTAFDISID  155 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHH
Confidence            99999999999999999999999998765 88999999999999999999999999999998876 99999999999999


Q ss_pred             hCchHHHHHHHHhC
Q 042244          172 ATLYDVALDLLKLY  185 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~  185 (368)
                      .++.++++.|++.+
T Consensus       156 ~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          156 NGNEDLAEILQKLN  169 (169)
T ss_dssp             TTCHHHHHHHHTC-
T ss_pred             hCCHHHHHHHHHcC
Confidence            99999999998753

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=2e-28  Score=211.51  Aligned_cols=165  Identities=16%  Similarity=0.154  Sum_probs=150.3

Q ss_pred             chhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhh
Q 042244            9 EEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLE   88 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~   88 (368)
                      ....+..|.||||.|++.|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+ +..++
T Consensus        32 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~--------~~~~~~Ll~~~-~~~~~  100 (201)
T 3hra_A           32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI--NLQNSISDSPYLYAGAQGR--------TEILAYMLKHA-TPDLN  100 (201)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHHS-CCCTT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCC--------HHHHHHHHhcc-Ccccc
Confidence            3445678999999999999999999999986654  3458899999999999999        99999999776 57789


Q ss_pred             chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCC-----HHHHHHHHhhCCCCccccCCCCc
Q 042244           89 QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGH-----KDTFQYLREVTHGVDIYSGNDGA  163 (368)
Q Consensus        89 ~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~-----~~~v~~Ll~~~~~~~~~~~~~g~  163 (368)
                      .+|..|.||||+|+..|+.+++++|+++++..++.+|..|+||||+|+..++     .+++++|++.+.+.+. +|.+|+
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~-~~~~g~  179 (201)
T 3hra_A          101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI-KDNSGR  179 (201)
T ss_dssp             CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC-CCTTSC
T ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc-cCCCCC
Confidence            9999999999999999999999999999966668999999999999999998     9999999999999887 999999


Q ss_pred             hHHHHHHHhCchHHHHHHHHhC
Q 042244          164 NMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       164 t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      ||||+|++.|+.++++.|++.+
T Consensus       180 t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          180 TAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999999999998764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=1.5e-28  Score=229.82  Aligned_cols=183  Identities=14%  Similarity=0.035  Sum_probs=162.7

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      .+..+.|+||.|++.|+.+.++.++...+... ...|..|.||||+|+..|+        .++++.|++.+  ..++.+|
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~d~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--~~~~~~~   88 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNR--------VRIVQLLLQHG--ADVHAKD   88 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCSSTTCCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCC
T ss_pred             eccccchhHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCCCccC
Confidence            45678899999999999999999998755444 4558899999999999999        99999999998  7789999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc---------------
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI---------------  156 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~---------------  156 (368)
                      ..|+||||+|+..|+.+++++|++++.+. +..|..|+||||+|+.+|+.+++++|++.+.+...               
T Consensus        89 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~  167 (351)
T 3utm_A           89 KGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP  167 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSH
T ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhh
Confidence            99999999999999999999999998765 88999999999999999999999999999876543               


Q ss_pred             --------------------------------------ccCCCCchHHHHHHHh---CchHHHHHHHHhCCcccccCCCC
Q 042244          157 --------------------------------------YSGNDGANMLSRLIDA---TLYDVALDLLKLYPTIGRDNIDS  195 (368)
Q Consensus       157 --------------------------------------~~~~~g~t~Lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~  195 (368)
                                                            ..+..|+||||.|+..   +..++++.|++.+ ...+.+|.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~  246 (351)
T 3utm_A          168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKD  246 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTT
T ss_pred             hhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCcCCC
Confidence                                                  1346788999999998   5578999999886 888999999


Q ss_pred             CCcHHHHHhcCC
Q 042244          196 RRIVLNALAEKP  207 (368)
Q Consensus       196 g~Tpl~l~~~~~  207 (368)
                      |+||||+|++..
T Consensus       247 g~t~L~~A~~~g  258 (351)
T 3utm_A          247 FMTPLHVAAERA  258 (351)
T ss_dssp             CCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcC
Confidence            999999998875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.1e-29  Score=225.61  Aligned_cols=182  Identities=15%  Similarity=0.098  Sum_probs=153.8

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHH----cCCccc--ccccCCCCCcHHHHHH---HcCCcccccCChHHHHHHHHhcCC
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVT----NDPDAL--TAKTIAPGSMTIFHAI---VELWVDVESDDATCLLDKLASKVD   83 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~----~~p~~~--~~~~~~~g~tpLh~A~---~~g~~~~~~~~~~~~v~~Ll~~~~   83 (368)
                      +..+.|+||.|++.|+.+.++.+++    ...+..  ....|..|+||||+|+   ..|+        .++++.|++.+ 
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~--------~~~v~~Ll~~g-   72 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR--------NDTIPILLDIA-   72 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTB--------CTHHHHHHHHH-
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCC--------HHHHHHHHHhc-
Confidence            3568899999999999998777776    443332  1122477999999999   7799        99999999986 


Q ss_pred             chh-----------hhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccC--------------CCCCcHHHHHHhh
Q 042244           84 PQT-----------LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRD--------------TLDSLPVIQAAYH  138 (368)
Q Consensus        84 p~~-----------~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~G~tpLh~Aa~~  138 (368)
                       ..           .+.+|..|+||||+|+..|+.+++++|++++.++ +.+|              .+|+||||+|+.+
T Consensus        73 -~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  150 (260)
T 3jxi_A           73 -EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACT  150 (260)
T ss_dssp             -HHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHT
T ss_pred             -ccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHc
Confidence             22           3445568999999999999999999999998765 6676              6899999999999


Q ss_pred             CCHHHHHHHHh---hCCCCccccCCCCchHHHHHHHhCc---------hHHHHHHHHhCCccc-------ccCCCCCCcH
Q 042244          139 GHKDTFQYLRE---VTHGVDIYSGNDGANMLSRLIDATL---------YDVALDLLKLYPTIG-------RDNIDSRRIV  199 (368)
Q Consensus       139 g~~~~v~~Ll~---~~~~~~~~~~~~g~t~Lh~a~~~~~---------~~~~~~Ll~~~~~~~-------~~~~~~g~Tp  199 (368)
                      |+.+++++|++   .+.+.+. +|.+|+||||+|+..++         .++++.|++.+ ...       +.+|.+|+||
T Consensus       151 g~~~~v~~Ll~~~~~ga~~~~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tp  228 (260)
T 3jxi_A          151 NQPHIVHYLTENGHKQADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSP  228 (260)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCH
T ss_pred             CCHHHHHHHHhccccCCCCcc-cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCH
Confidence            99999999999   8888876 99999999999998877         68999999886 555       7799999999


Q ss_pred             HHHHhcCC
Q 042244          200 LNALAEKP  207 (368)
Q Consensus       200 l~l~~~~~  207 (368)
                      ||+|++..
T Consensus       229 L~~A~~~g  236 (260)
T 3jxi_A          229 LMMAAKTG  236 (260)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            99998874

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=8.6e-29  Score=233.85  Aligned_cols=151  Identities=12%  Similarity=-0.021  Sum_probs=105.3

Q ss_pred             cccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCcc--
Q 042244           45 AKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTN--  122 (368)
Q Consensus        45 ~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~--  122 (368)
                      ...|.+|.||||+||..|+        .++++.|++.+  ..++.+|..|+||||+|+..|+.+++++|++.+.+...  
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~--------~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   83 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQ--------TDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH   83 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBT
T ss_pred             cccCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC
Confidence            4458889999999999999        99999999998  77889999999999999999999999999998763211  


Q ss_pred             -------------------------------------------------ccCCCCCcHHHHHHhhC--CHHHHHHHHhhC
Q 042244          123 -------------------------------------------------KRDTLDSLPVIQAAYHG--HKDTFQYLREVT  151 (368)
Q Consensus       123 -------------------------------------------------~~d~~G~tpLh~Aa~~g--~~~~v~~Ll~~~  151 (368)
                                                                       ..|.+|.||||+|+..|  +.+++++|++.+
T Consensus        84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g  163 (364)
T 3ljn_A           84 GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG  163 (364)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence                                                             04445556666666666  556666666665


Q ss_pred             CCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCc----ccccCCCCCCcHHHHHhcC
Q 042244          152 HGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPT----IGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       152 ~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~----~~~~~~~~g~Tpl~l~~~~  206 (368)
                      .+.+. +|.+|+||||.|+..|+.++++.|++.+..    ..+.+|.+|.||||+|+..
T Consensus       164 a~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~  221 (364)
T 3ljn_A          164 ASPTA-KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI  221 (364)
T ss_dssp             CCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT
T ss_pred             CCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHc
Confidence            55554 555666666666666666666666655421    1555556666666665554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.3e-28  Score=205.39  Aligned_cols=157  Identities=16%  Similarity=0.137  Sum_probs=143.7

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCC
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIG   94 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G   94 (368)
                      ...||||.|++.|+.+.++.|++.+++.  ...|..|+||||+|+. |+        .++++.|++.+  ..++.+|..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~-~~--------~~~v~~Ll~~g--~~~~~~~~~g   70 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMKL-GN--------PEIARRLLLRG--ANPDLKDRTG   70 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCCS-SC--------HHHHHHHHHTT--CCTTCCCTTS
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc--cccCccCccHHHHHHc-Cc--------HHHHHHHHHcC--CCCCCCCCCC
Confidence            4569999999999999999999987665  4458899999999999 99        99999999998  7788999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCc
Q 042244           95 YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATL  174 (368)
Q Consensus        95 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~  174 (368)
                      +||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+.+|+.+++++|++.+.+....+|.+|+||||+|+..|+
T Consensus        71 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           71 FAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  149 (162)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence            99999999999999999999998765 88999999999999999999999999999987533499999999999999999


Q ss_pred             hHHHHHHHHhC
Q 042244          175 YDVALDLLKLY  185 (368)
Q Consensus       175 ~~~~~~Ll~~~  185 (368)
                      .++++.|++++
T Consensus       150 ~~~~~~Ll~~G  160 (162)
T 1ihb_A          150 NEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999999886

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.3e-28  Score=209.19  Aligned_cols=168  Identities=14%  Similarity=0.078  Sum_probs=150.7

Q ss_pred             ccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcC
Q 042244           14 CARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDI   93 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~   93 (368)
                      ..+.++||.|++.|+.+.++.|++..+... ...|..|.||||+|+..|+        .++++.|++.+  ..++.+|..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~~~   71 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGR--------SAVVEMLIMRG--ARINVMNRG   71 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCT-TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccc-cccCCCCCCHHHHHHHcCc--------HHHHHHHHHcC--CCCCCcCCC
Confidence            457899999999999999999999877655 5568999999999999999        99999999998  778999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhC
Q 042244           94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDAT  173 (368)
Q Consensus        94 G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~  173 (368)
                      |+||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+..|+.+++++|++.+.+... +|.+|+||||+|+..+
T Consensus        72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~  149 (179)
T 3f6q_A           72 DDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPVDKAKAPL  149 (179)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB-CCTTSCCGGGGSCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch-hccCCCCcHHHHHHHH
Confidence            999999999999999999999998765 88999999999999999999999999999999886 9999999999999999


Q ss_pred             chHHHHHHHHhCCcccccCCCC
Q 042244          174 LYDVALDLLKLYPTIGRDNIDS  195 (368)
Q Consensus       174 ~~~~~~~Ll~~~~~~~~~~~~~  195 (368)
                      +.++++.|++.+ ...+..+.+
T Consensus       150 ~~~~~~~L~~~g-~~~~~~~~~  170 (179)
T 3f6q_A          150 RELLRERAEKMG-QNLNRIPYK  170 (179)
T ss_dssp             HHHHHHHHHHTT-CCCSCBCCC
T ss_pred             HHHHHHHHHHhh-cCcccCCcc
Confidence            999999999887 555544443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=7.3e-29  Score=207.78  Aligned_cols=159  Identities=17%  Similarity=0.105  Sum_probs=144.2

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      +..|.|+||.|++.|+.+.++.|++..+... ...+..|.||||+|+..|+        .++++.|++.+  ..++.+|.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~~   73 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNC-RDIEGRQSTPLHFAAGYNR--------VSVVEYLLQHG--ADVHAKDK   73 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCTTTTCCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCCT
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCc-cccccCCCCHHHHHHHcCh--------HHHHHHHHhcC--CCCCccCC
Confidence            4567899999999999999999999766554 4558889999999999999        99999999998  77899999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      .|+||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+.+|+.+++++|++.+.+... +|.+|+||||+|.. 
T Consensus        74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~a~~-  150 (165)
T 3twr_A           74 GGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK-KNRDGNTPLDLVKD-  150 (165)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCTGGGSCT-
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCChhHhHhc-
Confidence            9999999999999999999999998765 88999999999999999999999999999998886 99999999999776 


Q ss_pred             CchHHHHHHHHhC
Q 042244          173 TLYDVALDLLKLY  185 (368)
Q Consensus       173 ~~~~~~~~Ll~~~  185 (368)
                      ++.+++++|++++
T Consensus       151 ~~~~i~~~L~~~g  163 (165)
T 3twr_A          151 GDTDIQDLLRGDA  163 (165)
T ss_dssp             TCHHHHHHHHTC-
T ss_pred             CChHHHHHHhhcc
Confidence            8899999998765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=4.5e-29  Score=221.42  Aligned_cols=184  Identities=14%  Similarity=0.059  Sum_probs=160.5

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCC----ch
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVD----PQ   85 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~----p~   85 (368)
                      ...+..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+.    +.
T Consensus        39 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~~~~~~~~~  108 (236)
T 1ikn_D           39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPLHLACEQGC--------LASVGVLTQSCTTPHLHS  108 (236)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS--CCCCTTCCCHHHHHHHHTC--------HHHHHHHHHSTTTTSSSC
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCC--------HHHHHHHHhcccchhHHH
Confidence            345667999999999999999999999986554  3458899999999999999        999999999872    12


Q ss_pred             hhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC-CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCch
Q 042244           86 TLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT-LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGAN  164 (368)
Q Consensus        86 ~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  164 (368)
                      ..+..|..|.||||+|+..|+.+++++|++++.+. +.+|. +|+||||+|+..|+.+++++|++.+.+... +|.+|+|
T Consensus       109 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t  186 (236)
T 1ikn_D          109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR-VTYQGYS  186 (236)
T ss_dssp             GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCC-CCTTCCC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-ccCCCCC
Confidence            36788889999999999999999999999999776 77777 999999999999999999999999998886 9999999


Q ss_pred             HHHHHHHhCchHHHHHHHHhCCc-ccccCCCCCCcHHHHHhc
Q 042244          165 MLSRLIDATLYDVALDLLKLYPT-IGRDNIDSRRIVLNALAE  205 (368)
Q Consensus       165 ~Lh~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~Tpl~l~~~  205 (368)
                      |||+|+..++.+++++|++.+.. ....++.+|.||.+...+
T Consensus       187 pl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          187 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             GGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             HHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            99999999999999999998843 345788889998875443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=4.3e-28  Score=200.70  Aligned_cols=151  Identities=19%  Similarity=0.114  Sum_probs=140.3

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCC
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGY   95 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~   95 (368)
                      ..|+||.|++.|+.+.++.|++.+++..   .|..|.||||+|+..|+        .++++.|++.+  ..++.+|..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~~~g~   68 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGH--------FSTTEVLLRAG--VSRDARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTC--------HHHHHHHHTTT--CCTTCCCTTCC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCCCCCCCCCC
Confidence            4589999999999999999999977542   48889999999999999        99999999998  67889999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCch
Q 042244           96 TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLY  175 (368)
Q Consensus        96 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~  175 (368)
                      ||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+.+|+.+++++|++.+.+... +|.+|+||||+|+..|+.
T Consensus        69 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B           69 TPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999998765 88999999999999999999999999999998886 999999999999999999


Q ss_pred             HHHHHH
Q 042244          176 DVALDL  181 (368)
Q Consensus       176 ~~~~~L  181 (368)
                      +++++|
T Consensus       147 ~i~~~L  152 (153)
T 1awc_B          147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999865

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=3e-28  Score=215.26  Aligned_cols=166  Identities=13%  Similarity=0.111  Sum_probs=146.6

Q ss_pred             chhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccc---cccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCch
Q 042244            9 EEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALT---AKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~---~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      ....+..|.||||.|+..|+.++++.|++.+++...   ...|..|.||||+|+..|+        .++++.|++.+  .
T Consensus        30 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~   99 (232)
T 2rfa_A           30 VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQN--------VNLVRALLARG--A   99 (232)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTC--------HHHHHHHHHTT--C
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCC--------HHHHHHHHhCC--C
Confidence            344567899999999999999999999999776431   2336789999999999999        99999999998  5


Q ss_pred             hhhchhc-------------CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHH----HHHH
Q 042244           86 TLEQRDD-------------IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTF----QYLR  148 (368)
Q Consensus        86 ~~~~~d~-------------~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v----~~Ll  148 (368)
                      .++.++.             .|+||||+|+..|+.+++++|++++.++ +.+|.+|+||||+|+.+|+.+++    ++|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll  178 (232)
T 2rfa_A          100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLL  178 (232)
T ss_dssp             CTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             CCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHH
Confidence            5555554             7999999999999999999999998765 88999999999999999999988    9999


Q ss_pred             hhCCCCc-----cccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          149 EVTHGVD-----IYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       149 ~~~~~~~-----~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      +.+.+..     ..+|.+|+||||+|++.|+.++++.|++++
T Consensus       179 ~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          179 SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             HTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9998763     248999999999999999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=3.5e-28  Score=201.56  Aligned_cols=154  Identities=19%  Similarity=0.147  Sum_probs=140.6

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCC
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGY   95 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~   95 (368)
                      +.||||.|++.|+.+.++.|++..+... ...|..|+||||+ +..|+        .++++.|++.+  ..++.+|..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~--------~~~v~~Ll~~g--~~~~~~~~~g~   69 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGS--------TAIALELLKQG--ASPNVQDTSGT   69 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTC--------HHHHHHHHHTT--CCTTCCCTTSC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCC--------HHHHHHHHHCC--CCCCCcCCCCC
Confidence            5699999999999999999999833233 4558899999999 99999        99999999998  77899999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCch
Q 042244           96 TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLY  175 (368)
Q Consensus        96 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~  175 (368)
                      ||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+.+|+.+++++|++. .+... +|.+|+||||+|+..|+.
T Consensus        70 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A           70 SPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR-RDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSCCHHHHHHHSCCH
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC-cCCCCCCHHHHHHHcCcH
Confidence            9999999999999999999998765 88999999999999999999999999998 76665 999999999999999999


Q ss_pred             HHHHHHHHh
Q 042244          176 DVALDLLKL  184 (368)
Q Consensus       176 ~~~~~Ll~~  184 (368)
                      ++++.|+++
T Consensus       147 ~~v~~Ll~~  155 (156)
T 1bd8_A          147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999999864

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=8.7e-28  Score=210.88  Aligned_cols=162  Identities=18%  Similarity=0.146  Sum_probs=150.4

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ..+..|.||||.|+..|+.++++.|++..+... ...+..|.||||+|+..|+        .++++.|++.+  ..++.+
T Consensus        53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~--------~~~~~~Ll~~g--~~~~~~  121 (223)
T 2f8y_A           53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDL-DARMHDGTTPLILAARLAV--------EGMLEDLINSH--ADVNAV  121 (223)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCT-TCCCTTCCCHHHHHHHHTC--------HHHHHHHHHTT--CCTTCB
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCcHHHHHHHhCc--------HHHHHHHHHcC--CCCcCc
Confidence            456789999999999999999999999877554 5558899999999999999        99999999988  778899


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHH
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLI  170 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~  170 (368)
                      |..|+||||+|+..|+.+++++|++++.+. +.+|..|+||||+|+.+|+.+++++|++++.+... +|..|.||+|+|+
T Consensus       122 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~  199 (223)
T 2f8y_A          122 DDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRLPRDIAQ  199 (223)
T ss_dssp             CTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc-ccccCCCHHHHHH
Confidence            999999999999999999999999998765 88999999999999999999999999999998886 9999999999999


Q ss_pred             HhCchHHHHHHHHhC
Q 042244          171 DATLYDVALDLLKLY  185 (368)
Q Consensus       171 ~~~~~~~~~~Ll~~~  185 (368)
                      +.++.+++++|++.+
T Consensus       200 ~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          200 ERMHHDIVRLLDEYN  214 (223)
T ss_dssp             HTTCHHHHHHHHHTT
T ss_pred             HhcchHHHHHHHHcC
Confidence            999999999999887

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=6.9e-29  Score=225.26  Aligned_cols=151  Identities=11%  Similarity=0.043  Sum_probs=139.3

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      +..+.+|.||||.|+..|+.++++.|++.+.+.  ...+.+|.||+|.|+..++        .++++.|++.+  .+++.
T Consensus        80 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~--~~~~~~g~t~l~~a~~~~~--------~~~~~~Ll~~g--~~~n~  147 (269)
T 4b93_B           80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANA--GARNADQAVPLHLACQQGH--------FQVVKCLLDSN--AKPNK  147 (269)
T ss_dssp             TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTC--------HHHHHHHHHTT--CCSCC
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc--CccCCCCCCccccccccCh--------HHHHHHHHHCC--CCCCC
Confidence            345678999999999999999999999987665  3448899999999999999        99999999998  77899


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH
Q 042244           90 RDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL  169 (368)
Q Consensus        90 ~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a  169 (368)
                      +|..|+||||+|+..|+.+++++|++++.++ +.+|.+|+||||+|+.+|+.+++++|++.+++.+. +|.+|+||||+|
T Consensus       148 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~-~d~~G~TpL~~A  225 (269)
T 4b93_B          148 KDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV-LNKRQRTAVDCA  225 (269)
T ss_dssp             CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCSGGGS
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHH
Confidence            9999999999999999999999999998775 89999999999999999999999999999999887 999999999999


Q ss_pred             HHhCc
Q 042244          170 IDATL  174 (368)
Q Consensus       170 ~~~~~  174 (368)
                      +++++
T Consensus       226 ~~~~~  230 (269)
T 4b93_B          226 EQNSK  230 (269)
T ss_dssp             CTTCH
T ss_pred             HhCCc
Confidence            87765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=2.4e-28  Score=227.92  Aligned_cols=177  Identities=12%  Similarity=0.027  Sum_probs=142.9

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      .+..|.||||.|+..|+.++++.|++.+.+.  ...|.+|+||||+|+..|+.     ...++++.|++.+ ...++.+|
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~--n~~d~~g~TpLh~A~~~g~~-----~~~~~~~~ll~~~-~~~~~~~d  198 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNR--LYGDNMGESCLVKAVKSVNN-----YDSGTFEALLDYL-YPCLILED  198 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TBCCTTCCCHHHHHHHSSHH-----HHTTCHHHHHHHH-GGGGGEEC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHhccc-----ccHHHHHHHHHhh-hccccCCC
Confidence            5778999999999999999999999987655  34588999999999998870     0025677888876 56789999


Q ss_pred             cCCCcHHHHHHH----cCCHHHHHHHHhhC-------------------CCCccccCCCCCcHHHHHHhhCCHHHHHHHH
Q 042244           92 DIGYTALYQCAV----KGNLRALKVLVKYN-------------------PDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR  148 (368)
Q Consensus        92 ~~G~tpLh~A~~----~g~~~~v~~Ll~~~-------------------~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll  148 (368)
                      ..|+||||+|+.    .|+.++++.|++.+                   ...++.+|..|+||||.|+.      +++|+
T Consensus       199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll  272 (327)
T 1sw6_A          199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWII  272 (327)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHH
T ss_pred             CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHH
Confidence            999999999999    89999999999872                   23347889999999999986      88999


Q ss_pred             hhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          149 EVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       149 ~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      +..  .+. +|.+|+||||+|+..|+.++++.|++.+ .+.+.+|.+|+||||+|+++
T Consensus       273 ~~~--~n~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          273 ANM--LNA-QDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHT--TTC-CCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC-
T ss_pred             HhC--CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhc
Confidence            883  443 8999999999999999999999999886 88999999999999998764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=1.5e-28  Score=233.34  Aligned_cols=182  Identities=12%  Similarity=0.040  Sum_probs=161.6

Q ss_pred             ccCChHHHHHHHhCCHHHHHHHH--------HcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCch
Q 042244           14 CARYWPLYRMIEKNDWRGVEDFV--------TNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~Ll--------~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      ..|.||||.|+..|+.++++.|+        +.+.+.  ...|.+|.||||+|+..|+        .++++.|++.+  .
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v--n~~d~~g~TpL~~A~~~g~--------~~iv~~Ll~~g--a  190 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV--NAMDCDENTPLMLAVLARR--------RRLVAYLMKAG--A  190 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT--TCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--C
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC--cCCCCCCCCHHHHHHHcCh--------HHHHHHHHHCC--C
Confidence            67999999999999999888877        443333  4458899999999999999        99999999998  7


Q ss_pred             hhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCC--CCccccCCCCCcHHHHHHhhC---CHHHHHHHHhhCCCCcc----
Q 042244           86 TLEQRDDIGYTALYQCAVKGNLRALKVLVKYNP--DLTNKRDTLDSLPVIQAAYHG---HKDTFQYLREVTHGVDI----  156 (368)
Q Consensus        86 ~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~--~~~~~~d~~G~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~----  156 (368)
                      .++.+|..|.||||+|+..|+.+++++|++.+.  ..++..|.+|+||||+|+..+   +.+++++|++.+.+...    
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  270 (373)
T 2fo1_E          191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  270 (373)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc
Confidence            788999999999999999999999999999762  234788999999999999998   89999999999887653    


Q ss_pred             ---ccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          157 ---YSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       157 ---~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                         ..|.+|.||||.|+..|+.+++++|++.++.+.+.+|.+|+||||+|++..
T Consensus       271 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g  324 (373)
T 2fo1_E          271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG  324 (373)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence               257799999999999999999999999988999999999999999998864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=224.70  Aligned_cols=183  Identities=12%  Similarity=0.092  Sum_probs=159.0

Q ss_pred             ccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcC
Q 042244           14 CARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDI   93 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~   93 (368)
                      ....+++|.|+..|+.+.++.+++...+......|.+|+||||+||..|+        .++++.|++.+ ...++.+|..
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~--------~~~v~~Ll~~g-~~~~~~~~~~  144 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN--------FPVVQQLLDSG-VCKVDKQNRA  144 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTS-CCCTTCCCTT
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCC--------HHHHHHHHHCC-CCcCCCCCCC
Confidence            34668889999999999999998764443225558899999999999999        99999999998 4478899999


Q ss_pred             CCcHHHHHH-----HcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHH
Q 042244           94 GYTALYQCA-----VKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSR  168 (368)
Q Consensus        94 G~tpLh~A~-----~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  168 (368)
                      |.||||+|+     ..++.++++.|++.+.. .+..|..|+||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||+
T Consensus       145 g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~-~d~~G~TpLh~  222 (276)
T 4hbd_A          145 GYSPIMLTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV-QDDDGSTALMC  222 (276)
T ss_dssp             SCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHH
T ss_pred             CCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHH
Confidence            999999999     66889999999999854 377888899999999999999999999999998886 89999999999


Q ss_pred             HHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          169 LIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       169 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |+..|+.++++.|++..+.+.+.+|.+|+||+|+|++..
T Consensus       223 A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g  261 (276)
T 4hbd_A          223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAG  261 (276)
T ss_dssp             HHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcC
Confidence            999999999999998555889999999999999998753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=1.3e-27  Score=201.66  Aligned_cols=142  Identities=20%  Similarity=0.204  Sum_probs=135.0

Q ss_pred             cHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHH
Q 042244           53 MTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPV  132 (368)
Q Consensus        53 tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpL  132 (368)
                      ++|+.||+.|+        .++|+.|++.+  .+++.+|.+|+||||+|+..++.++++.|++.+.++ +.+|.+|+|||
T Consensus         6 ~~L~~Aa~~G~--------~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpL   74 (169)
T 4gpm_A            6 KRLIEAAENGN--------KDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPL   74 (169)
T ss_dssp             HHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHH
Confidence            47999999999        99999999998  789999999999999999999999999999998775 88999999999


Q ss_pred             HHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          133 IQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       133 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |+|+.+|+.+++++|++.+.+.+. +|.+|+||||+|+..|+.++++.|++.+ .+.+.+|++|+||||+|+++.
T Consensus        75 h~A~~~g~~~~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g  147 (169)
T 4gpm_A           75 HHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHG  147 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcC
Confidence            999999999999999999999887 9999999999999999999999999987 889999999999999998864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=218.36  Aligned_cols=162  Identities=19%  Similarity=0.175  Sum_probs=148.6

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHH-----HcCCcccccCChHHHHHHHHhcCCch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAI-----VELWVDVESDDATCLLDKLASKVDPQ   85 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~-----~~g~~~~~~~~~~~~v~~Ll~~~~p~   85 (368)
                      ..+..|.||||.|+..|+.++++.|++.++... ...|..|.||||+|+     ..++        .++++.|++.+  .
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~a~~~~~~~~~~--------~~~v~~Ll~~g--~  174 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIMLTALATLKTQDD--------IETVLQLFRLG--N  174 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHGGGCCCCSHHH--------HHHHHHHHHHS--C
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHHHHHHHhhhhhh--------HHHHHHHHHcC--C
Confidence            346789999999999999999999999987444 556899999999999     5677        99999999998  7


Q ss_pred             hhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHh-hCCCCccccCCCCch
Q 042244           86 TLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE-VTHGVDIYSGNDGAN  164 (368)
Q Consensus        86 ~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t  164 (368)
                      .....|..|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+.+|+.+++++|++ .+.+.+. +|.+|+|
T Consensus       175 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~-~d~~g~T  252 (276)
T 4hbd_A          175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL-TDRDGST  252 (276)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTC-CCTTSCC
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcC-cCCCCCC
Confidence            77888999999999999999999999999998775 8899999999999999999999999999 7888776 9999999


Q ss_pred             HHHHHHHhCchHHHHHHHHhC
Q 042244          165 MLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       165 ~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      |||+|+..|+.++++.|+++.
T Consensus       253 pL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          253 ALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999886

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=3e-27  Score=209.01  Aligned_cols=181  Identities=18%  Similarity=0.120  Sum_probs=159.1

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      +..|.|+||.|++.|+.+.++.|++.+.+.  ...+..|.||||+|+..|+        .++++.|++.+ +......+.
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~~-~~~~~~~~~   74 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYDV--RQPDKENVTLLHWAAINNR--------IDLVKYYISKG-AIVDQLGGD   74 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTT-CCTTCCBTT
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCCc--CCCCCCCCCHHHHHHHhCC--------HHHHHHHHHcC-CcchhhcCC
Confidence            456889999999999999999999987654  4458899999999999999        99999999998 444445556


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      .|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|++.+.+... .+.+|.||||.|+..
T Consensus        75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~g~t~l~~a~~~  152 (240)
T 3eu9_A           75 LNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-MDQNGMTPLMWAAYR  152 (240)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHH
T ss_pred             cCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc-cCCCCCcHHHHHHHh
Confidence            6999999999999999999999998765 78899999999999999999999999999988876 899999999999977


Q ss_pred             Cc-hHHHHHHHHhCCcccccCCC-CCCcHHHHHhcCC
Q 042244          173 TL-YDVALDLLKLYPTIGRDNID-SRRIVLNALAEKP  207 (368)
Q Consensus       173 ~~-~~~~~~Ll~~~~~~~~~~~~-~g~Tpl~l~~~~~  207 (368)
                      ++ .++++.|++.+ ...+..+. +|.||||+|++..
T Consensus       153 ~~~~~~~~~L~~~~-~~~~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          153 THSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             CCSSTTHHHHHHTT-CCTTCCCTTTCCCHHHHHHHHT
T ss_pred             CChHHHHHHHHhcC-CCcchhhccCCCcHHHHHHHcC
Confidence            76 77888888776 77777776 8999999998754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=6.4e-27  Score=218.68  Aligned_cols=151  Identities=20%  Similarity=0.133  Sum_probs=123.1

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCc--------hhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCC
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDP--------QTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPD  119 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p--------~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~  119 (368)
                      |..|.||||+|+..|+        .++++.|++.+..        ......+..|.||||+|+..|+.+++++|+++...
T Consensus       122 d~~g~t~l~~A~~~~~--------~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ga  193 (337)
T 4g8k_A          122 DFYGFTAFMEAAVYGK--------VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  193 (337)
T ss_dssp             CTTCCBHHHHHHHTTC--------HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred             ccCCCCHHHHHHHcCc--------HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCC
Confidence            4445555555555555        8999999998721        11334566799999999999999999999986444


Q ss_pred             CccccCCCCCcHHHHHHhhCC----HHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCC
Q 042244          120 LTNKRDTLDSLPVIQAAYHGH----KDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDS  195 (368)
Q Consensus       120 ~~~~~d~~G~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  195 (368)
                      .++.+|..|+||+|.++..++    .+++++|++.+.+.+. +|.+|+||||.|+..|+.++++.|++..+...+.+|.+
T Consensus       194 d~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~-~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~  272 (337)
T 4g8k_A          194 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD  272 (337)
T ss_dssp             CTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC-CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT
T ss_pred             CcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC
Confidence            458999999999999887654    4688999999999886 99999999999999999999999998877899999999


Q ss_pred             CCcHHHHHhcCC
Q 042244          196 RRIVLNALAEKP  207 (368)
Q Consensus       196 g~Tpl~l~~~~~  207 (368)
                      |+||||+|++..
T Consensus       273 G~TpL~~A~~~g  284 (337)
T 4g8k_A          273 GKTALLLAVELK  284 (337)
T ss_dssp             SCBHHHHHHHTT
T ss_pred             CCCHHHHHHHcC
Confidence            999999998864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=8.8e-28  Score=217.89  Aligned_cols=179  Identities=11%  Similarity=0.060  Sum_probs=144.3

Q ss_pred             hhccCChHHHHHHHh---CCHHHHHHHHHcCCcc------cc---cccCCCCCcHHHHHHHcCCcccccCChHHHHHHHH
Q 042244           12 EYCARYWPLYRMIEK---NDWRGVEDFVTNDPDA------LT---AKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLA   79 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~---G~~~~v~~Ll~~~p~~------~~---~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll   79 (368)
                      .+..|.||||.|+..   |+.++++.|++...+.      ++   ...|..|.||||+|+..|+        .++++.|+
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~--------~~~v~~Ll  121 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN--------MTLVTLLV  121 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTC--------HHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCC--------HHHHHHHH
Confidence            367899999999987   9999999999974221      10   1236689999999999999        99999999


Q ss_pred             hcCCchhhhchhc--------------CCCcHHHHHHHcCCHHHHHHHHh---hCCCCccccCCCCCcHHHHHHhhCC--
Q 042244           80 SKVDPQTLEQRDD--------------IGYTALYQCAVKGNLRALKVLVK---YNPDLTNKRDTLDSLPVIQAAYHGH--  140 (368)
Q Consensus        80 ~~~~p~~~~~~d~--------------~G~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~G~tpLh~Aa~~g~--  140 (368)
                      +.+  .+++.+|.              .|.||||+|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..|+  
T Consensus       122 ~~g--a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~  198 (273)
T 2pnn_A          122 ENG--ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNT  198 (273)
T ss_dssp             HTT--CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSC
T ss_pred             HCC--CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcc
Confidence            998  77788886              79999999999999999999999   66654 8899999999999999998  


Q ss_pred             -------HHHHHHHHhhCCCCcc------ccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHH
Q 042244          141 -------KDTFQYLREVTHGVDI------YSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLN  201 (368)
Q Consensus       141 -------~~~v~~Ll~~~~~~~~------~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~  201 (368)
                             .+++++|++.+.+.+.      .+|.+|+||||+|++.|+.++++.|++++..+.......+.+|-|
T Consensus       199 ~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          199 VDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence                   7999999999877641      389999999999999999999999999985577766666666543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=3.5e-27  Score=202.64  Aligned_cols=150  Identities=17%  Similarity=0.082  Sum_probs=140.2

Q ss_pred             cccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCcccc
Q 042244           45 AKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKR  124 (368)
Q Consensus        45 ~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  124 (368)
                      ...|..|+||||+|+..|+        .++++.|++.+  ..++.+|..|+||||+|+..|+.+++++|++.+.+. +.+
T Consensus        29 n~~d~~g~t~L~~A~~~g~--------~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~   97 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGM--------ENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTK   97 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTC--------GGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCC
T ss_pred             hCcCCCCCCHHHHHHHcCC--------HHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCC
Confidence            3448899999999999999        99999999998  678899999999999999999999999999998765 889


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHh
Q 042244          125 DTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALA  204 (368)
Q Consensus       125 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~  204 (368)
                      |..|+||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||.|+..|+.++++.|++.+ ...+.+|.+|.||+|+|+
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~  175 (192)
T 2rfm_A           98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASAR  175 (192)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999998886 9999999999999999999999999986 888999999999999998


Q ss_pred             cCC
Q 042244          205 EKP  207 (368)
Q Consensus       205 ~~~  207 (368)
                      +..
T Consensus       176 ~~~  178 (192)
T 2rfm_A          176 IFG  178 (192)
T ss_dssp             HTT
T ss_pred             HhC
Confidence            764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=4.6e-28  Score=217.54  Aligned_cols=162  Identities=14%  Similarity=0.088  Sum_probs=143.6

Q ss_pred             hhccCChHHHHHHHh---CCHHHHHHHHHcCCccc--c-------cccCCCCCcHHHHHHHcCCcccccCChHHHHHHHH
Q 042244           12 EYCARYWPLYRMIEK---NDWRGVEDFVTNDPDAL--T-------AKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLA   79 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~---G~~~~v~~Ll~~~p~~~--~-------~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll   79 (368)
                      .+..|.||||.|+..   |+.++++.|++.+.+..  .       ...|..|.||||+|+..|+        .++++.|+
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~--------~~~v~~Ll  110 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS--------LQCVKLLV  110 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTC--------HHHHHHHH
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCC--------HHHHHHHH
Confidence            567899999999999   99999999998743321  0       1124679999999999999        99999999


Q ss_pred             hcCCchhhhchhcC-------------CCcHHHHHHHcCCHHHHHHHHh---hCCCCccccCCCCCcHHHHHHh--hCCH
Q 042244           80 SKVDPQTLEQRDDI-------------GYTALYQCAVKGNLRALKVLVK---YNPDLTNKRDTLDSLPVIQAAY--HGHK  141 (368)
Q Consensus        80 ~~~~p~~~~~~d~~-------------G~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~G~tpLh~Aa~--~g~~  141 (368)
                      +.+  .+++.+|..             |.||||+|+..|+.+++++|++   .+.+. +.+|.+|+||||+|+.  .++.
T Consensus       111 ~~g--a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~  187 (256)
T 2etb_A          111 ENG--ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSP  187 (256)
T ss_dssp             HTT--CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCH
T ss_pred             HcC--CCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCc
Confidence            998  778888876             9999999999999999999999   66654 8999999999999999  7788


Q ss_pred             H-------HHHHHHhhCCCC-------ccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          142 D-------TFQYLREVTHGV-------DIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       142 ~-------~v~~Ll~~~~~~-------~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      +       ++++|++.+.+.       +. +|.+|+||||+|++.|+.++++.|++++
T Consensus       188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~-~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          188 ENSALVIHMYDGLLQMGARLCPTVQLEEI-SNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCGGGC-CCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHcCCCcccccccccc-cCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            8       999999998887       55 9999999999999999999999999986

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=2e-27  Score=213.73  Aligned_cols=161  Identities=11%  Similarity=0.069  Sum_probs=141.5

Q ss_pred             ccCChHHHHHH---HhCCHHHHHHHHHcCCc---------ccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhc
Q 042244           14 CARYWPLYRMI---EKNDWRGVEDFVTNDPD---------ALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASK   81 (368)
Q Consensus        14 ~~g~t~Lh~A~---~~G~~~~v~~Ll~~~p~---------~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~   81 (368)
                      ..|.||||.|+   +.|+.++++.|++...+         ......|..|+||||+||..|+        .++++.|++.
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~--------~~~v~~Ll~~  115 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC--------KHYVELLVEK  115 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTC--------HHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCC--------HHHHHHHHhC
Confidence            66999999999   78999999999997321         1112335589999999999999        9999999999


Q ss_pred             CCchhhhchh--------------cCCCcHHHHHHHcCCHHHHHHHHh---hCCCCccccCCCCCcHHHHHHhhCC----
Q 042244           82 VDPQTLEQRD--------------DIGYTALYQCAVKGNLRALKVLVK---YNPDLTNKRDTLDSLPVIQAAYHGH----  140 (368)
Q Consensus        82 ~~p~~~~~~d--------------~~G~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~G~tpLh~Aa~~g~----  140 (368)
                      +  ..++.+|              ..|+||||+|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..++    
T Consensus       116 g--a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~  192 (260)
T 3jxi_A          116 G--ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRE  192 (260)
T ss_dssp             T--CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHH
T ss_pred             C--CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchh
Confidence            8  7788888              589999999999999999999999   66654 8999999999999999887    


Q ss_pred             -----HHHHHHHHhhCCCC-------ccccCCCCchHHHHHHHhCchHHHHHHHHhCC
Q 042244          141 -----KDTFQYLREVTHGV-------DIYSGNDGANMLSRLIDATLYDVALDLLKLYP  186 (368)
Q Consensus       141 -----~~~v~~Ll~~~~~~-------~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~  186 (368)
                           .+++++|++.+.+.       .. +|.+|+||||+|++.|+.++++.|+++++
T Consensus       193 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~-~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          193 NTKFVTKMYDLLLIKCAKLFPDTNLEAL-LNNDGLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCCGGGC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcccccccchhhc-ccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence                 69999999998876       43 89999999999999999999999999873

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=2.4e-26  Score=214.77  Aligned_cols=179  Identities=16%  Similarity=0.149  Sum_probs=106.6

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      ....|.|+||.|++.|+.++|+.||+.+.+.- ...+..|+||||+||..|+        .++|+.|++++  ..++.+|
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn-~~~~~~g~TpLh~A~~~g~--------~~iv~~Ll~~g--a~~~~~~   89 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSR--------EDIVELLLRHG--ADPVLRK   89 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCC
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCcCHHHHHHHcCC--------HHHHHHHHHcC--Cchhhhc
Confidence            34568899999999999999999999876553 3334569999999999999        99999999987  4455545


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc---------ccCCCC
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI---------YSGNDG  162 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~---------~~~~~g  162 (368)
                      ..+.+|+|.++..+..++.+.+++.+.++ +..|..|+||||+|+..|+.++++++++.+.+...         ..+..|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g  168 (337)
T 4g8k_A           90 KNGATPFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG  168 (337)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCS
T ss_pred             cCCCchhHHHHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCC
Confidence            44444444444444444444444444332 44444444444444444444444444444433221         123334


Q ss_pred             chHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHH
Q 042244          163 ANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNA  202 (368)
Q Consensus       163 ~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l  202 (368)
                      .||||.|++.|+.++++.|+++.+.+.+.+|..|.||++.
T Consensus       169 ~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~  208 (337)
T 4g8k_A          169 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH  208 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHH
Confidence            4444444444444444444443334444444444444443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=2.1e-26  Score=193.12  Aligned_cols=145  Identities=14%  Similarity=0.114  Sum_probs=136.1

Q ss_pred             CCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCC
Q 042244           50 PGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDS  129 (368)
Q Consensus        50 ~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~  129 (368)
                      +|.||||.|+..|+        .++++.|++.+  ..++.+|..|+||||+|+..|+.+++++|++.+.+. +.+|..|+
T Consensus         2 ~~~t~L~~A~~~g~--------~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   70 (167)
T 3v31_A            2 ANSLSVHQLAAQGE--------MLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRE   70 (167)
T ss_dssp             TTCCCHHHHHHTTC--------HHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCC
T ss_pred             CCcchHHHHHHCCC--------HHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCC
Confidence            58999999999999        99999999998  678999999999999999999999999999998665 88899999


Q ss_pred             cHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          130 LPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       130 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||.|+..|+.++++.|++.+ .+.+.+|.+|.||+|+|++..
T Consensus        71 t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A           71 SALSLACSKGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcC
Confidence            999999999999999999999998886 9999999999999999999999999976 888899999999999998753

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.1e-27  Score=213.45  Aligned_cols=180  Identities=13%  Similarity=0.004  Sum_probs=128.5

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      +..|.||||.|++.|+.+.++.|++.+.+..   .+..|.||||.|+..|+        .++++.|++.+  .+++.+|.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~~~~~~t~L~~A~~~g~--------~~~v~~Ll~~g--~~~~~~d~   68 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---FNPLPLALLLDSSLEGE--------FDLVQRIIYEV--DDPSLPND   68 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTC--------HHHHHHHTSTT--SSCCCCCT
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc---cCchhhHHHHHHHHcCC--------HHHHHHHHHcC--CCCCCcCC
Confidence            3568999999999999999999999865542   35788999999999999        99999999998  68899999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCc-hHHHHH--
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGA-NMLSRL--  169 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~a--  169 (368)
                      .|+||||+|+..|+.+++++|++++.++ +.+|.+|+||||+|+.+|+.+++++|++++.+.+. ++.+|. ||||+|  
T Consensus        69 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~~t~l~~a~~  146 (239)
T 1ycs_B           69 EGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA-MTYSDMQTAADKCEE  146 (239)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHCCS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce-ecCCCCcchHHHHHH
Confidence            9999999999999999999999998775 89999999999999999999999999999999886 776666 999999  


Q ss_pred             HHhCchHHHHHHHHhCCcccccC---------CCCCCcHHHHHhcCCC
Q 042244          170 IDATLYDVALDLLKLYPTIGRDN---------IDSRRIVLNALAEKPY  208 (368)
Q Consensus       170 ~~~~~~~~~~~Ll~~~~~~~~~~---------~~~g~Tpl~l~~~~~~  208 (368)
                      +..|+.++++.|++.+ ...+..         +..+.++.+++.++.+
T Consensus       147 ~~~g~~~~~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          147 MEEGYTQCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             SSTTCCCHHHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhhccHHHHHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence            7889999999999876 443333         6668888887766543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=8.7e-29  Score=219.27  Aligned_cols=181  Identities=13%  Similarity=0.016  Sum_probs=156.3

Q ss_pred             chhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhh
Q 042244            9 EEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLE   88 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~   88 (368)
                      .+..+..+.||||.|+..|+.++++.|++.+.+.  ...|..|+||||+||..|+        .++++.|++.+  .+++
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~d~~g~tpLh~A~~~g~--------~~~v~~Ll~~g--a~~n   81 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP--SQPNEEGITALHNAICGAN--------YSIVDFLITAG--ANVN   81 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTT--CCTT
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC--CCCCCCCCCHHHHHHHcCC--------HHHHHHHHHCC--CCCC
Confidence            3455677889999999999999999999986654  3458899999999999999        99999999998  7889


Q ss_pred             chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccC-CCCCcHHHHH--HhhCCHHHHHHHHhhCCCCccccCCCCchH
Q 042244           89 QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRD-TLDSLPVIQA--AYHGHKDTFQYLREVTHGVDIYSGNDGANM  165 (368)
Q Consensus        89 ~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~tpLh~A--a~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  165 (368)
                      .+|..|+||||+|+..|+.+++++|++.+.+. +.+| .+|+||||+|  +..|+.+++++|++.+.+.+. +|..|.|+
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~-~~~~~~~~  159 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL-MNSGAVYA  159 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT-SGGGEEEE
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc-ccCCchHH
Confidence            99999999999999999999999999998876 5554 6999999999  999999999999999988876 88899999


Q ss_pred             HHHHHHhCchHHHHHHHHhCCcc--cccCCCCCCcHHHHHhcCC
Q 042244          166 LSRLIDATLYDVALDLLKLYPTI--GRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       166 Lh~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ++.+...+..   +.|++.+ ..  .+.+|.+|+||||+|+++.
T Consensus       160 l~~~~~~~~~---~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          160 LWDYSAEFGD---ELSFREG-ESVTVLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             SSCBCCSSTT---BCCBCTT-CEEEEEESSCTTCSSEEEEEETT
T ss_pred             HHHHhhcccc---ccCcccc-ccccccccCCCcccHHHHHHHcC
Confidence            9865544433   3455554 44  6788999999999998864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=4.9e-26  Score=191.85  Aligned_cols=145  Identities=16%  Similarity=0.122  Sum_probs=134.9

Q ss_pred             CCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCc
Q 042244           51 GSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL  130 (368)
Q Consensus        51 g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t  130 (368)
                      +.||||.|+..|+        .++++.|++.+ +..++.+|..|+||||+|+..|+.+++++|++++.+. +.+|.+|+|
T Consensus         2 ~~~~L~~A~~~g~--------~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t   71 (172)
T 3v30_A            2 DSLSIHQLAAQGE--------LDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERES   71 (172)
T ss_dssp             --CCHHHHHHTTC--------HHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCC
T ss_pred             chhhHHHHHHcCC--------HHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCC
Confidence            5789999999999        99999999998 6668999999999999999999999999999998765 889999999


Q ss_pred             HHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          131 PVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       131 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |||+|+..|+.+++++|++.+.+.+. +|.+|+||||.|+..++.++++.|++.+ ...+.+|.+|+||+|+|++..
T Consensus        72 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~  146 (172)
T 3v30_A           72 ALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALG  146 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhC
Confidence            99999999999999999999998886 8999999999999999999999999986 888999999999999998764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.5e-26  Score=193.60  Aligned_cols=148  Identities=14%  Similarity=0.069  Sum_probs=136.8

Q ss_pred             cCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           47 TIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        47 ~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      .|.+|.||||.|+..|+        .++++.|++.. +...+..|..|+||||+|+..|+.+++++|++++.+. +.+|.
T Consensus         4 ~~~~~~~~l~~A~~~g~--------~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~   73 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGD--------VETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK   73 (165)
T ss_dssp             --CHHHHHHHHHHHHTC--------HHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             CcchhhHHHHHHHHhCC--------HHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCC
Confidence            37789999999999999        99999999987 6778888999999999999999999999999998765 88999


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      +|+||||+|+..|+.+++++|++.+.+.+. +|.+|+||||.|+..|+.++++.|++.+ .+.+.+|.+|+||+|+|.+.
T Consensus        74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~~  151 (165)
T 3twr_A           74 GGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKDG  151 (165)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhcC
Confidence            999999999999999999999999998886 9999999999999999999999999986 88999999999999997653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=1.3e-26  Score=212.06  Aligned_cols=163  Identities=13%  Similarity=0.064  Sum_probs=148.6

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCC
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIG   94 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G   94 (368)
                      +|.||||.|+..|+.++++.|++.+.+.  ...|..|+||||+|+..|+        .++++.|++.+  ..++.+|..|
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~d~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--a~~~~~~~~g  128 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLDD--SQFDDKGNTALYYAVDSGN--------MQTVKLFVKKN--WRLMFYGKTG  128 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHHHC--GGGGGCSSSG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCcCCCCCcHHHHHHHcCC--------HHHHHHHHhcC--CCCCccCCCC
Confidence            4899999999999999999999987664  3458899999999999999        99999999998  7889999999


Q ss_pred             -CcHHHHHHHcCCHHHHHHHHhhCCCCccccCC-CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchH-HHHHHH
Q 042244           95 -YTALYQCAVKGNLRALKVLVKYNPDLTNKRDT-LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANM-LSRLID  171 (368)
Q Consensus        95 -~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~-Lh~a~~  171 (368)
                       .||||+|+..|+.+++++|++++++.   .|. .|+||||+|+.+|+.+++++|++++.+.+. +|.+|+|| ||+|+.
T Consensus       129 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~  204 (285)
T 3kea_A          129 WKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAID  204 (285)
T ss_dssp             GGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHH
Confidence             79999999999999999999998765   333 899999999999999999999999988886 99999998 999999


Q ss_pred             hCchHHHHHHHHhCCcccccCCC
Q 042244          172 ATLYDVALDLLKLYPTIGRDNID  194 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~~~~~~~~~~  194 (368)
                      .++.++++.|++.+ .+.+.+|.
T Consensus       205 ~~~~~~v~~Ll~~g-ad~~~~~~  226 (285)
T 3kea_A          205 NKDIEMLQALFKYD-INIYSANL  226 (285)
T ss_dssp             HTCHHHHHHHTTSC-BCSTTTTG
T ss_pred             cCCHHHHHHHHHcC-CCCCCCCh
Confidence            99999999999886 77776664

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=4.3e-27  Score=201.61  Aligned_cols=162  Identities=8%  Similarity=-0.020  Sum_probs=140.9

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      ..+++++||.|++.|+.+.++.+++.+++..   .+..|+||||+|+..|+.    +++.++++.|++.+  .+++.+|.
T Consensus         3 ~~~~~~~l~~Aa~~g~~~~~~~l~~~~~~~~---~~~~g~T~Lh~A~~~~~~----~~~~~iv~~Ll~~G--advn~~d~   73 (186)
T 3t8k_A            3 AMSEYRTVSAAAMLGTYEDFLELFEKGYEDK---ESVLKSNILYDVLRNNND----EARYKISMFLINKG--ADIKSRTK   73 (186)
T ss_dssp             HHHHCSSHHHHHHHSCHHHHHHHHHHSSSCH---HHHHTTTHHHHHTTCSCH----HHHHHHHHHHHHTT--CCSSCCCT
T ss_pred             ccccccHHHHHHHcCCHHHHHHHHhcCcccc---cccCCCCHHHHHHHcCCc----chHHHHHHHHHHCC--CCCCCCCC
Confidence            3457899999999999999999999886643   136799999999999981    00135999999998  88999999


Q ss_pred             CCCcHHHHHHHcCC------HHHHHHHHhhCCCCccccCCCCC-cHHHHHHhhC-----CHHHHHHHHh-hCCCCccccC
Q 042244           93 IGYTALYQCAVKGN------LRALKVLVKYNPDLTNKRDTLDS-LPVIQAAYHG-----HKDTFQYLRE-VTHGVDIYSG  159 (368)
Q Consensus        93 ~G~tpLh~A~~~g~------~~~v~~Ll~~~~~~~~~~d~~G~-tpLh~Aa~~g-----~~~~v~~Ll~-~~~~~~~~~~  159 (368)
                      +|+||||+|+..|+      .+++++|++++.++ +.+|.+|+ ||||+|+..+     +.+++++|++ .+.+.+. +|
T Consensus        74 ~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~-~d  151 (186)
T 3t8k_A           74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI-KD  151 (186)
T ss_dssp             TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC-CC
T ss_pred             CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc-cC
Confidence            99999999999987      68899999999776 99999999 9999999954     4569999999 8999887 99


Q ss_pred             CCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          160 NDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       160 ~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      .+|+||||+|++.++.++++.|....
T Consensus       152 ~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          152 KWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             TTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999888654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=4.9e-26  Score=189.69  Aligned_cols=146  Identities=19%  Similarity=0.100  Sum_probs=134.9

Q ss_pred             CCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCC
Q 042244           49 APGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLD  128 (368)
Q Consensus        49 ~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G  128 (368)
                      +...||||.|+..|+        .++++.|++.+  ..++.+|..|+||||+|+. |+.+++++|++.+.+. +.+|..|
T Consensus         3 ~~~~~~L~~A~~~g~--------~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g   70 (162)
T 1ihb_A            3 EPWGNELASAAARGD--------LEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTG   70 (162)
T ss_dssp             --CHHHHHHHHHHTC--------HHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             chHhhHHHHHHHcCC--------HHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCC
Confidence            456899999999999        99999999987  6788999999999999999 9999999999998765 8899999


Q ss_pred             CcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          129 SLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       129 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      +||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||.|+..|+.+++++|++.+....+.+|.+|+||+|+|++..
T Consensus        71 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  148 (162)
T 1ihb_A           71 FAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG  148 (162)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcC
Confidence            9999999999999999999999988876 99999999999999999999999999986667899999999999998864

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=9.3e-26  Score=189.82  Aligned_cols=148  Identities=18%  Similarity=0.141  Sum_probs=136.5

Q ss_pred             cCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           47 TIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        47 ~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      ....+.+|||.||..|+        .++++.|++.+  ..++.+|..|+||||+|+..|+.+++++|++++.+. +.+|.
T Consensus        10 ~~~~~~~~l~~A~~~g~--------~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~   78 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGR--------DDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDH   78 (169)
T ss_dssp             ---CHHHHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             CCCcccchHHHHHHcCC--------HHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC
Confidence            35667899999999999        99999999998  778899999999999999999999999999998765 88999


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      +|+||||+|+..|+.+++++|++.+.+.+. +|.+|+||||.|+..++.+++++|++.+ .+.+.+|.+|.||+|+|+++
T Consensus        79 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~  156 (169)
T 2y1l_E           79 AGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDN  156 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHh
Confidence            999999999999999999999999998876 8999999999999999999999999986 78889999999999999876


Q ss_pred             C
Q 042244          207 P  207 (368)
Q Consensus       207 ~  207 (368)
                      .
T Consensus       157 ~  157 (169)
T 2y1l_E          157 G  157 (169)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=1.1e-25  Score=186.21  Aligned_cols=143  Identities=15%  Similarity=0.104  Sum_probs=131.9

Q ss_pred             CCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCc
Q 042244           51 GSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL  130 (368)
Q Consensus        51 g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t  130 (368)
                      ..||||.|+..|+        .++++.|++.+  ...+ .|..|.||||+|+..|+.+++++|++.+.+. +.+|..|+|
T Consensus         2 ~~~~L~~A~~~g~--------~~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t   69 (153)
T 1awc_B            2 LGKKLLEAARAGQ--------DDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRT   69 (153)
T ss_dssp             HHHHHHHHHHHTC--------HHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCC
T ss_pred             ccHHHHHHHHcCC--------HHHHHHHHHcC--CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            4689999999999        99999999998  3333 6889999999999999999999999998765 889999999


Q ss_pred             HHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          131 PVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       131 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |||+|+..|+.+++++|++.+.+.+. +|.+|+||||.|+..|+.+++++|++.+ ...+.+|.+|+||+|+|+++.
T Consensus        70 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~  144 (153)
T 1awc_B           70 PLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHcChHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcC
Confidence            99999999999999999999988886 9999999999999999999999999986 888999999999999998864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=9.1e-26  Score=191.63  Aligned_cols=147  Identities=19%  Similarity=0.143  Sum_probs=134.0

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCC
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTL  127 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  127 (368)
                      ++++.+|||.||..|+        .++++.|++.+ +..++.+|..|+||||+|+..|+.+++++|++.+.+. +.+|.+
T Consensus         2 ~~~~~~~l~~A~~~g~--------~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~   71 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGN--------AVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRG   71 (179)
T ss_dssp             -----CCHHHHHHHTC--------HHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             CHHHHHHHHHHHHcCC--------HHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCC
Confidence            3468899999999999        99999999997 6778999999999999999999999999999998765 889999


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          128 DSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       128 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      |+||||+|+..|+.+++++|++.+.+.+. +|.+|+||||.|+..++.++++.|++.+ .+.+.+|.+|+||+|+|.+.
T Consensus        72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A           72 DDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHH
Confidence            99999999999999999999999998886 9999999999999999999999999986 88999999999999988653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.5e-25  Score=185.65  Aligned_cols=143  Identities=19%  Similarity=0.081  Sum_probs=133.6

Q ss_pred             CCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCc
Q 042244           51 GSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSL  130 (368)
Q Consensus        51 g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t  130 (368)
                      |.||||.|+..|+        .++++.|++.. +..++.+|..|+||||+ +..|+.+++++|++.+.+. +.+|..|+|
T Consensus         2 ~~~~L~~A~~~g~--------~~~v~~ll~~~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t   70 (156)
T 1bd8_A            2 AGDRLSGAAARGD--------VQEVRRLLHRE-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTS   70 (156)
T ss_dssp             HHHHHHHHHHHTC--------HHHHHHHHHTT-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             cchHHHHHHHhCC--------HHHHHHHHHhh-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCC
Confidence            5799999999999        99999999994 67789999999999999 9999999999999998765 889999999


Q ss_pred             HHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          131 PVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       131 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |||+|+.+|+.+++++|++.+.+.+. +|.+|+||||.|+..|+.+++++|++.  ...+.+|.+|.||+|+|++..
T Consensus        71 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~  144 (156)
T 1bd8_A           71 PVHDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSC
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999999999988876 899999999999999999999999987  788889999999999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.92  E-value=8.4e-25  Score=200.42  Aligned_cols=174  Identities=18%  Similarity=0.108  Sum_probs=148.9

Q ss_pred             HHHHhCCHHHHHHHHHcCCccc-------ccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCC
Q 042244           22 RMIEKNDWRGVEDFVTNDPDAL-------TAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIG   94 (368)
Q Consensus        22 ~A~~~G~~~~v~~Ll~~~p~~~-------~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G   94 (368)
                      .+++.|+.+.++.++...++..       ....+.+|.||||.||..|+        .++++.|++.+  ..++.+|.+|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~--------~~~v~~Ll~~g--~~~~~~~~~g   73 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGD--------TEEVLRLLERG--ADINYANVDG   73 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTC--------HHHHHHHHHHC--CCTTCBCTTC
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCC--------HHHHHHHHHcC--CCCcccCCCC
Confidence            4788888999999998744321       12224468899999999999        99999999998  6789999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc------------------
Q 042244           95 YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI------------------  156 (368)
Q Consensus        95 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~------------------  156 (368)
                      .||||+|+..|+.+++++|++++.++ +.+|..|+||||+|+..|+.+++++|++.+.+...                  
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  152 (299)
T 1s70_B           74 LTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME  152 (299)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchH
Confidence            99999999999999999999998765 88999999999999999999999999999876543                  


Q ss_pred             -----------------------------------------ccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCC
Q 042244          157 -----------------------------------------YSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDS  195 (368)
Q Consensus       157 -----------------------------------------~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  195 (368)
                                                               ..+.+|.||||.|+..|+.++++.|++.+ .+.+.+|.+
T Consensus       153 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~  231 (299)
T 1s70_B          153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYD  231 (299)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTT
T ss_pred             HHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCC
Confidence                                                     02356788899999999999999999876 888889999


Q ss_pred             CCcHHHHHhcCC
Q 042244          196 RRIVLNALAEKP  207 (368)
Q Consensus       196 g~Tpl~l~~~~~  207 (368)
                      |+||||+|++..
T Consensus       232 g~tpL~~A~~~~  243 (299)
T 1s70_B          232 GWTPLHAAAHWG  243 (299)
T ss_dssp             CCCHHHHHHHTT
T ss_pred             CCcHHHHHHhcC
Confidence            999999998864

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.5e-25  Score=186.12  Aligned_cols=143  Identities=17%  Similarity=0.087  Sum_probs=117.3

Q ss_pred             cCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           47 TIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        47 ~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      .+..|.||||+|+..|+        .++++.|++.+  ..++.+|..|+||||+|+ .|+.+++++|++++.++ +.+|.
T Consensus         8 ~~~~~~t~L~~A~~~g~--------~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~   75 (156)
T 1bi7_B            8 SMEPSADWLATAAARGR--------VEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADP   75 (156)
T ss_dssp             --CCSTTHHHHHHHHTC--------HHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCT
T ss_pred             CCccchHHHHHHHHcCC--------HHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCC
Confidence            37789999999999999        99999999998  778999999999999985 89999999999998765 88999


Q ss_pred             CCCc-HHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHH
Q 042244          127 LDSL-PVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNAL  203 (368)
Q Consensus       127 ~G~t-pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~  203 (368)
                      .|+| |||+|+.+|+.+++++|++.+.+.+. +|.+|+||||+|+..|+.+++++|++.+ ...+.+|..|.||.+-.
T Consensus        76 ~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence            9999 99999999999999999999998886 9999999999999999999999999886 88999999999998743

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.6e-25  Score=184.65  Aligned_cols=143  Identities=20%  Similarity=0.146  Sum_probs=115.3

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ..+..|.||||.|++.|+.++++.|++.+.+.  ...|..|+||||+|+ .|+        .++++.|++.+  ..++.+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~-~~~--------~~~v~~Ll~~g--~~~~~~   73 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPIQVMM-MGS--------ARVAELLLLHG--AEPNCA   73 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCT--TCCCSSSCCTTTSSC-TTC--------HHHHHHHHTTT--CCCCCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHH-cCC--------HHHHHHHHHcC--CCCCCc
Confidence            45677999999999999999999999986554  445889999999985 899        99999999998  778999


Q ss_pred             hcCCCc-HHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHH
Q 042244           91 DDIGYT-ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSR  168 (368)
Q Consensus        91 d~~G~t-pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  168 (368)
                      |..|+| |||+|+..|+.+++++|++++.++ +.+|.+|+||||+|+.+|+.+++++|++++.+... +|..|.|+.+.
T Consensus        74 d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~~~~  150 (156)
T 1bi7_B           74 DPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG-SNHARIDAAEG  150 (156)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc-cCcCcCccccc
Confidence            999999 999999999999999999998765 88999999999999999999999999999999886 89999998764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=8.1e-25  Score=177.37  Aligned_cols=125  Identities=16%  Similarity=0.089  Sum_probs=80.1

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCC
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTL  127 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  127 (368)
                      |..|.||||+|+..|+        .++++.|++.+  ..++.+|..|+||||+|+. |+.+++++|++++.+. +.+|..
T Consensus         9 ~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~   76 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQ--------VETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPA   76 (136)
T ss_dssp             CCCCSCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTT
T ss_pred             CCCCccHHHHHHHcCC--------HHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCC
Confidence            5566666666666666        66666666665  4556666666666666666 6666666666665543 556666


Q ss_pred             -CCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          128 -DSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       128 -G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                       |+||||+|+.+|+.+++++|++.+.+... +|.+|+||||+|+..++.+++++|++.+
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVLHRAGARLDV-CDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTCCCCCC-CSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence             66666666666666666666666665554 6666666666666666666666666554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=1.4e-24  Score=175.90  Aligned_cols=119  Identities=11%  Similarity=0.058  Sum_probs=102.3

Q ss_pred             hhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCC-Cc
Q 042244           85 QTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGND-GA  163 (368)
Q Consensus        85 ~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~-g~  163 (368)
                      ..++.+|..|.||||+|+..|+.+++++|++++.+. +.+|..|+||||+|+. |+.+++++|++.+.+.+. +|.+ |+
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~~g~   79 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC-ADPATLT   79 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC-CBTTTTB
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC-cCCCCCC
Confidence            356778888999999999999999999999887654 7888899999999999 999999999998888776 7888 89


Q ss_pred             hHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          164 NMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       164 t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ||||+|+..|+.++++.|++.+ ...+.+|.+|+||+|+|+++.
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~  122 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQG  122 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcC
Confidence            9999999999999999998876 778888889999999987653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=4.4e-24  Score=173.01  Aligned_cols=125  Identities=19%  Similarity=0.198  Sum_probs=72.5

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      ...+.||||.|++.|+.++++.|++.+.+.  ...|..|.||||+|+..|+        .++++.|++.+  .+++.+|.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~d~   78 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPLYLATAHGH--------LEIVEVLLKNG--ADVNAVDA   78 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCT
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCCCcCCC
Confidence            344556666666666666666666654433  2335556666666666666        66666666655  44555566


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhh
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREV  150 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~  150 (368)
                      .|+||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+.+|+.+++++|++.
T Consensus        79 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           79 IGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            6666666666666666666666655443 55555666666666666666666666554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=4.4e-25  Score=195.35  Aligned_cols=161  Identities=14%  Similarity=0.079  Sum_probs=137.8

Q ss_pred             HHHHHc--CCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHH
Q 042244           33 EDFVTN--DPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRAL  110 (368)
Q Consensus        33 ~~Ll~~--~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v  110 (368)
                      +.|++.  +|+.. ...+.+|.||||.|+..|+        .++++.|++.+  .+++.+|..|+||||+|+..|+.+++
T Consensus         2 ~~ll~~~~~~~~~-~~~~~~~~t~L~~A~~~g~--------~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v   70 (229)
T 2vge_A            2 RSVLRKAGSPRKA-RRARLNPLVLLLDAALTGE--------LEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIV   70 (229)
T ss_dssp             --------CCCCC-CCTTSCHHHHHHHHHHHTC--------HHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             eehhccCCCCccc-cccccchhHHHHHHHHcCC--------HHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            456665  34444 4457788899999999999        99999999998  67899999999999999999999999


Q ss_pred             HHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH--HHhCchHHHHHHHHhCCcc
Q 042244          111 KVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL--IDATLYDVALDLLKLYPTI  188 (368)
Q Consensus       111 ~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a--~~~~~~~~~~~Ll~~~~~~  188 (368)
                      ++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++.+.+.....+.+|+||||+|  +..++.+++++|++.+ ..
T Consensus        71 ~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~  148 (229)
T 2vge_A           71 DFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE-QS  148 (229)
T ss_dssp             HHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HH
T ss_pred             HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CC
Confidence            9999998765 889999999999999999999999999999988762347999999999  9999999999999987 78


Q ss_pred             cccCCCCCCcHHHHHhcC
Q 042244          189 GRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       189 ~~~~~~~g~Tpl~l~~~~  206 (368)
                      .+.+|..|.||++.++..
T Consensus       149 ~~~~~~~~~~~l~~~~~~  166 (229)
T 2vge_A          149 MGLMNSGAVYALWDYSAE  166 (229)
T ss_dssp             TTTSGGGEEEESSCBCCS
T ss_pred             cccccCCchHHHHHHhhc
Confidence            888899999998854443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.4e-23  Score=166.76  Aligned_cols=125  Identities=21%  Similarity=0.222  Sum_probs=86.0

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCC
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIG   94 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G   94 (368)
                      +|.||||.|++.|+.++++.|++.+++.  ...|..|.||||+|+..|+        .++++.|++.+  ..++.+|..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~--------~~~~~~Ll~~g--~~~~~~~~~g   68 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGH--------LEVVKLLLEAG--ADVNAKDKNG   68 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCTTS
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHcCc--------HHHHHHHHHcC--CCCcccCCCC
Confidence            3667777777777777777777765443  2336667777777777777        77777777766  5566667777


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCC
Q 042244           95 YTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTH  152 (368)
Q Consensus        95 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~  152 (368)
                      +||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+..|+.+++++|+++++
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           69 RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             CcHHHHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            77777777777777777777766553 5666677777777777777777777776654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=5e-24  Score=172.69  Aligned_cols=127  Identities=23%  Similarity=0.240  Sum_probs=117.2

Q ss_pred             cCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           47 TIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        47 ~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      ....|.||||+||..|+        .++++.|++.+  .+++.+|..|+||||+|+..|+.+++++|++.+.+. +.+|.
T Consensus        10 ~~~~~~t~l~~A~~~g~--------~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~   78 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQ--------DDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDA   78 (136)
T ss_dssp             --CHHHHHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             ccccccHHHHHHHHhCC--------HHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC
Confidence            35678999999999999        99999999998  778999999999999999999999999999998765 88999


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      +|+||||+|+.+|+.+++++|++.+.+... +|.+|+||||+|+..++.++++.|++.+
T Consensus        79 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNA-QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcC-cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999988876 9999999999999999999999998753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=3e-23  Score=164.78  Aligned_cols=124  Identities=23%  Similarity=0.252  Sum_probs=117.2

Q ss_pred             CCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCC
Q 042244           50 PGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDS  129 (368)
Q Consensus        50 ~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~  129 (368)
                      +|+||||+|+..|+        .++++.|++.+  ..++.+|..|.||||+|+..|+.+++++|++.+.+. +.+|..|+
T Consensus         1 ~g~t~L~~A~~~~~--------~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~   69 (126)
T 1n0r_A            1 NGRTPLHLAARNGH--------LEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGR   69 (126)
T ss_dssp             CCCCHHHHHHHHTC--------HHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             CCccHHHHHHHcCc--------HHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCC
Confidence            58999999999999        99999999998  668889999999999999999999999999998765 88999999


Q ss_pred             cHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          130 LPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       130 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      ||||+|+..|+.+++++|++.+.+... +|.+|+||||.|+..++.+++++|++.+
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           70 TPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            999999999999999999999988876 8999999999999999999999999886

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=2.4e-24  Score=200.82  Aligned_cols=169  Identities=10%  Similarity=0.026  Sum_probs=132.2

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcH
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTA   97 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tp   97 (368)
                      +.+|.|+..+..++++.|++...+.- ...|.+|+||||+||..|+        .++++.|++++  .+++.+|.+|+||
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn-~~~d~~g~TpLh~Aa~~g~--------~~~v~~Ll~~G--ad~n~~d~~g~Tp  167 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLN-IPVDEHGNTPLHWLTSIAN--------LELVKHLVKHG--SNRLYGDNMGESC  167 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSC-SCCSTTCCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTBCCTTCCCH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcc-cccCCCCCcHHHHHHHcCC--------HHHHHHHHHcC--CCCCCcCCCCCCH
Confidence            34577787777788888877654442 3258999999999999999        99999999998  8899999999999


Q ss_pred             HHHHHHcCC---HHHHHHHHhhCCCCccccCCCCCcHHHHHHh----hCCHHHHHHHHhh--------------------
Q 042244           98 LYQCAVKGN---LRALKVLVKYNPDLTNKRDTLDSLPVIQAAY----HGHKDTFQYLREV--------------------  150 (368)
Q Consensus        98 Lh~A~~~g~---~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~----~g~~~~v~~Ll~~--------------------  150 (368)
                      ||+|+..|+   .++++.|++.+...++.+|.+|+||||+|+.    .|+.+++++|++.                    
T Consensus       168 Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~  247 (327)
T 1sw6_A          168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK  247 (327)
T ss_dssp             HHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----
T ss_pred             HHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcc
Confidence            999999998   6788888887655568999999999999999    8999999999987                    


Q ss_pred             CCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          151 THGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       151 ~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      +.+.+. +|.+|.||||.|+.      ++.|++.   ..+.+|.+|+||||+|++..
T Consensus       248 g~~~~~-~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g  294 (327)
T 1sw6_A          248 ESKPND-KNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLG  294 (327)
T ss_dssp             -------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHC
T ss_pred             cCCccc-ccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcC
Confidence            555555 89999999999885      7788877   48889999999999998864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=1.5e-23  Score=186.48  Aligned_cols=142  Identities=11%  Similarity=0.048  Sum_probs=100.4

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCC
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTL  127 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  127 (368)
                      +..|.||||.|+..|+        .+.++.|++++  ..++. +..|.||||.|+..|+.++++.|++.+.+. +.+|.+
T Consensus         2 ~~~g~t~L~~a~~~~~--------~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~   69 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNL--------RKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDE   69 (239)
T ss_dssp             ----------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTT
T ss_pred             CccccccCchhhhhhh--------HHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            3469999999999999        99999999998  55654 467899999999999999999999998754 889999


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCC-cHHHHH
Q 042244          128 DSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRR-IVLNAL  203 (368)
Q Consensus       128 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-Tpl~l~  203 (368)
                      |+||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||.|+..|+.++++.|++.+ .+.+.+|.+|. ||+|++
T Consensus        70 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           70 GITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHH
Confidence            99999999999999999999999998886 9999999999999999999999999987 77888887776 999988

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=2.8e-23  Score=177.04  Aligned_cols=142  Identities=18%  Similarity=0.066  Sum_probs=124.6

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      +.+..|.||||.|++.|+.+.++.|++ +.+.  ...|..|+||||+|+..|+        .++++.|++.+  ..++.+
T Consensus        39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~--~~~d~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--a~~~~~  105 (183)
T 3deo_A           39 DVVSEYETPWWTAARKADEQALSQLLE-DRDV--DAVDENGRTALLFVAGLGS--------DKCVRLLAEAG--ADLDHR  105 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT--TCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--CCTTCC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC--CCcCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCCCcC
Confidence            446789999999999999999999998 4333  4458899999999999999        99999999998  778888


Q ss_pred             h-cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH
Q 042244           91 D-DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL  169 (368)
Q Consensus        91 d-~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a  169 (368)
                      | ..|+||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|++.++                  ...+.++|+.+
T Consensus       106 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a  166 (183)
T 3deo_A          106 DMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFG  166 (183)
T ss_dssp             CSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHH
T ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHH
Confidence            8 88999999999999999999999998765 8899999999999997542                  24568999999


Q ss_pred             HHhCchHHHHHHHHh
Q 042244          170 IDATLYDVALDLLKL  184 (368)
Q Consensus       170 ~~~~~~~~~~~Ll~~  184 (368)
                      +..|+.++++.|.++
T Consensus       167 ~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          167 RRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHcCHHHHHHHHHHh
Confidence            999999999988654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=5.8e-23  Score=183.42  Aligned_cols=143  Identities=18%  Similarity=0.065  Sum_probs=126.7

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ   89 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~   89 (368)
                      .+.+..|.||||.|++.|+.++++.|++ ..+.  ...|..|+||||+||..|+        .++++.|++.+  ..++.
T Consensus        39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~--~~~d~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--a~~~~  105 (244)
T 3ui2_A           39 ADVVSEYETPWWTAARKADEQALSQLLE-DRDV--DAVDENGRTALLFVAGLGS--------DKCVRLLAEAG--ADLDH  105 (244)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT--TCBCTTSCBHHHHHHHHTC--------HHHHHHHHHTT--CCTTC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC--CCcCCCCCCHHHHHHHCCC--------HHHHHHHHHcC--CCCCc
Confidence            3456689999999999999999999998 4333  4458899999999999999        99999999998  77888


Q ss_pred             hh-cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHH
Q 042244           90 RD-DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSR  168 (368)
Q Consensus        90 ~d-~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  168 (368)
                      +| ..|+||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+..+                  .+..+.||||+
T Consensus       106 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~  166 (244)
T 3ui2_A          106 RDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL------------------KTTPKGNPMQF  166 (244)
T ss_dssp             CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH------------------hccCCCCHHHH
Confidence            88 78999999999999999999999998765 889999999999998632                  34678999999


Q ss_pred             HHHhCchHHHHHHHHh
Q 042244          169 LIDATLYDVALDLLKL  184 (368)
Q Consensus       169 a~~~~~~~~~~~Ll~~  184 (368)
                      |+..|+.++++.|++.
T Consensus       167 a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          167 GRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHh
Confidence            9999999999999875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.7e-23  Score=169.67  Aligned_cols=125  Identities=18%  Similarity=0.176  Sum_probs=113.0

Q ss_pred             cCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           47 TIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        47 ~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      .|.+|+||||+|+..|+        .++++.|++.+  ..++.+|..|+||||+|+..|+.+++++|++++.+. +.+|.
T Consensus         6 ~~~~g~t~L~~A~~~~~--------~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~   74 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGD--------IPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGY   74 (137)
T ss_dssp             CCTTCCCHHHHHHHHTC--------HHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCG
T ss_pred             cCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCC
Confidence            47899999999999999        99999999998  778899999999999999999999999999998765 88999


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHH
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLK  183 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~  183 (368)
                      +|+||||+|+.+|+.+++++|++.+.+... +|.+|+||||+|+..+..++++.+.+
T Consensus        75 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           75 QNDSPLHDAAKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             GGCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhhccHHHHHhhccc
Confidence            999999999999999999999999998886 99999999999998888777765544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=4.7e-23  Score=176.37  Aligned_cols=143  Identities=10%  Similarity=-0.047  Sum_probs=125.2

Q ss_pred             CCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh-cCCCcHHHHHHHcCCH----HHHHHHHhhCCCCccccC
Q 042244           51 GSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD-DIGYTALYQCAVKGNL----RALKVLVKYNPDLTNKRD  125 (368)
Q Consensus        51 g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d-~~G~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~d  125 (368)
                      +.++||.|++.|+        .+.++.+++.+ +   +.+| ..|+||||+|+..|+.    +++++|++++.++ +.+|
T Consensus         6 ~~~~l~~Aa~~g~--------~~~~~~l~~~~-~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d   72 (186)
T 3t8k_A            6 EYRTVSAAAMLGT--------YEDFLELFEKG-Y---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRT   72 (186)
T ss_dssp             HCSSHHHHHHHSC--------HHHHHHHHHHS-S---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCC
T ss_pred             cccHHHHHHHcCC--------HHHHHHHHhcC-c---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCC
Confidence            5689999999999        99999999876 2   3445 7899999999999975    5999999999776 8999


Q ss_pred             CCCCcHHHHHHhhCC------HHHHHHHHhhCCCCccccCCCCc-hHHHHHHHhC-----chHHHHHHHHhCCcccccCC
Q 042244          126 TLDSLPVIQAAYHGH------KDTFQYLREVTHGVDIYSGNDGA-NMLSRLIDAT-----LYDVALDLLKLYPTIGRDNI  193 (368)
Q Consensus       126 ~~G~tpLh~Aa~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~a~~~~-----~~~~~~~Ll~~~~~~~~~~~  193 (368)
                      .+|+||||+|+..++      .+++++|++.+++.+. +|.+|+ ||||+|+..+     +.++++.|++..+.+.+.+|
T Consensus        73 ~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~-~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d  151 (186)
T 3t8k_A           73 KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA-LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD  151 (186)
T ss_dssp             TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS-CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred             CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc-cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence            999999999999987      5789999999999987 999999 9999999843     45688999983349999999


Q ss_pred             CCCCcHHHHHhcCC
Q 042244          194 DSRRIVLNALAEKP  207 (368)
Q Consensus       194 ~~g~Tpl~l~~~~~  207 (368)
                      ++|+||||+|++..
T Consensus       152 ~~G~TpL~~A~~~~  165 (186)
T 3t8k_A          152 KWGLTALEFVKRCQ  165 (186)
T ss_dssp             TTSCCHHHHHHTTT
T ss_pred             CCCCCHHHHHHHcC
Confidence            99999999998864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=3.4e-23  Score=167.81  Aligned_cols=128  Identities=16%  Similarity=0.074  Sum_probs=113.3

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ..+..|.||||.|+..|+.++++.|++.+.+.  ...|..|+||||+|+..|+        .++++.|++.+  ..++.+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~~~~Ll~~g--~~~~~~   72 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP--NVKDHAGWTPLHEACNHGH--------LKVVELLLQHK--ALVNTT   72 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CcccCc
Confidence            34678999999999999999999999986654  3458899999999999999        99999999998  778999


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhC
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVT  151 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~  151 (368)
                      |..|+||||+|+..|+.+++++|++.+.+. +.+|.+|+||||+|+..+..++++++.+..
T Consensus        73 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            999999999999999999999999998765 889999999999999999988888776554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=9.8e-23  Score=162.01  Aligned_cols=115  Identities=18%  Similarity=0.201  Sum_probs=100.4

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCC
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTL  127 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  127 (368)
                      +..|.||||+|+..|+        .++++.|++.+  ..++.+|..|+||||+|+..|+.+++++|++.+.+. +.+|.+
T Consensus         4 ~~~~~~~l~~A~~~~~--------~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~   72 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGD--------LDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKH   72 (123)
T ss_dssp             ---CHHHHHHHHHTTC--------HHHHHHHHHTT--CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTT
T ss_pred             ccccchHHHHHHHcCC--------HHHHHHHHHcC--CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCC
Confidence            5678899999999999        99999999988  668889999999999999999999999999988764 888999


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCc
Q 042244          128 DSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATL  174 (368)
Q Consensus       128 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~  174 (368)
                      |+||||+|+..|+.+++++|++.+.+... +|.+|+||||+|...+.
T Consensus        73 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           73 HITPLLSAVYEGHVSCVKLLLSKGADKTV-KGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHhCCHHH
Confidence            99999999999999999999999888876 89999999999854433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=6.2e-23  Score=180.20  Aligned_cols=137  Identities=15%  Similarity=0.070  Sum_probs=113.3

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCC
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTL  127 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  127 (368)
                      +.+|.||||+||..|+        .++++.|++.+  ..++.+|..|+||||+|+..|+.+++++|++.....++.+|.+
T Consensus        70 ~~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~  139 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGN--------LSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL  139 (222)
T ss_dssp             EEEESCHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTT
T ss_pred             ccccccccccccccCc--------HHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCC
Confidence            5678999999999999        99999999988  7789999999999999999999999999999833445899999


Q ss_pred             CCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCC
Q 042244          128 DSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSR  196 (368)
Q Consensus       128 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  196 (368)
                      |+||||+|+..|+.+++++|++.+.+... +|.+|+||||+|+..++.++++.+++.+ .....+|.+|
T Consensus       140 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~  206 (222)
T 3ehr_A          140 GDTALHAAAWKGYADIVQLLLAKGARTDL-RNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED  206 (222)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCSCC-CCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCcc-ccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence            99999999999999999999999999887 9999999999999999999999988876 5555555443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=186.33  Aligned_cols=141  Identities=20%  Similarity=0.117  Sum_probs=119.8

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCcccccc-----cCCCCCcHHHHHHHc---CCcccccCChHHHHHHHHhcCCchhh
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDALTAK-----TIAPGSMTIFHAIVE---LWVDVESDDATCLLDKLASKVDPQTL   87 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~-----~~~~g~tpLh~A~~~---g~~~~~~~~~~~~v~~Ll~~~~p~~~   87 (368)
                      +.++||.|++.|+.+.++.+++.+++.. ..     .+..|+||||+|+..   |+        .++++.|++.+  .++
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~--------~~iv~~Ll~~g--adv  219 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFG-QPLPGPDAQAPEELVLHLAVKVANQAS--------LPLVDFIIQNG--GHL  219 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCEECSSSCSCEECHHHHHHHTCCTTT--------HHHHHHHHHHS--SCT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCccc-ccCCCcccCCCCccHHHHHHHhcccCc--------HHHHHHHHhcC--CCC
Confidence            3467999999999999999999876653 21     478899999999997   78        99999999998  788


Q ss_pred             hchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHH
Q 042244           88 EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLS  167 (368)
Q Consensus        88 ~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  167 (368)
                      +.+|.+|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++.+++       .|.||||
T Consensus       220 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh  291 (301)
T 2b0o_E          220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLH  291 (301)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhH
Confidence            999999999999999999999999999998775 89999999999999999999999999987654       5789999


Q ss_pred             HHHHhCch
Q 042244          168 RLIDATLY  175 (368)
Q Consensus       168 ~a~~~~~~  175 (368)
                      +|+..|+.
T Consensus       292 ~A~~~g~~  299 (301)
T 2b0o_E          292 VDYSWVIS  299 (301)
T ss_dssp             --------
T ss_pred             HHHhcCCc
Confidence            99988763

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=4.1e-24  Score=202.44  Aligned_cols=161  Identities=13%  Similarity=0.027  Sum_probs=128.4

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCC-cccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCch--hhh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDP-DALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQ--TLE   88 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p-~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~--~~~   88 (368)
                      ...++.||||.|++.|+.++++.|++... +......+..|.||||+||..|+        .++|+.|++++ ++  ..+
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~--------~eiv~~Ll~~g-ad~~~~~  158 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH--------LHVLNRLCELA-PTEIMAM  158 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC--------HHHHHHHHHSC-TTTHHHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC--------HHHHHHHHhCC-CCccccc
Confidence            34456799999999999999999998854 21112346678999999999999        99999999998 32  123


Q ss_pred             chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccc--cCCCCCcHHHHHH-hhCCHHHHHHHHhhCCCCccccCCCCchH
Q 042244           89 QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNK--RDTLDSLPVIQAA-YHGHKDTFQYLREVTHGVDIYSGNDGANM  165 (368)
Q Consensus        89 ~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~--~d~~G~tpLh~Aa-~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  165 (368)
                      ..+.+ +||||+|+..|+.+++++|++++++. +.  .|.+|+||||+|+ .+|+.+++++|++.+.        +|.||
T Consensus       159 i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~ta  228 (376)
T 2aja_A          159 IQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYA  228 (376)
T ss_dssp             HSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHH
T ss_pred             cCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchH
Confidence            33333 89999999999999999999998765 44  7888999999999 9999999999998542        38899


Q ss_pred             HHHHHHhCchHHHHHHHHhCCcccccC
Q 042244          166 LSRLIDATLYDVALDLLKLYPTIGRDN  192 (368)
Q Consensus       166 Lh~a~~~~~~~~~~~Ll~~~~~~~~~~  192 (368)
                      ||.|+..|+.+++++|++.+ ...+.+
T Consensus       229 L~~Aa~~g~~evv~lL~~~g-a~~~~~  254 (376)
T 2aja_A          229 EIHEFEYGEKYVNPFIARHV-NRLKEM  254 (376)
T ss_dssp             HHCTTTTTTTTHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhcC-cccccc
Confidence            99999999999999999876 444433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=1.1e-22  Score=178.60  Aligned_cols=139  Identities=15%  Similarity=0.141  Sum_probs=112.7

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      ..+..|.||||.|+..|+.++++.|++.+.+.  ...|..|+||||+||..|+        .++++.|++.. ...++.+
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~~-g~~~~~~  136 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV--NGLDKAGSTALYWACHGGH--------KDIVEMLFTQP-NIELNQQ  136 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHTTST-TCCCCCC
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCc--cccCCCCCCHHHHHHHcCC--------HHHHHHHHcCC-CCCcccc
Confidence            45667899999999999999999999986654  4458899999999999999        99999999983 3778999


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCC
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDG  162 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g  162 (368)
                      |..|+||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+..++.++++.+++.+..... .|.+|
T Consensus       137 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~-~~~~~  206 (222)
T 3ehr_A          137 NKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL-SNAED  206 (222)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc-cchhh
Confidence            999999999999999999999999998765 88999999999999999999999999998887654 44433

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=2.1e-22  Score=160.07  Aligned_cols=117  Identities=16%  Similarity=0.148  Sum_probs=103.7

Q ss_pred             ccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcC
Q 042244           14 CARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDI   93 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~   93 (368)
                      ..|.||||.|++.|+.+.++.|++.+++.  ...|..|+||||+|+..|+        .++++.|++.+  ..++.+|..
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~--~~~~~~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~~~~d~~   72 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQ--------LEILEFLLLKG--ADINAPDKH   72 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCT--TSCCTTSSCHHHHHHHTTC--------HHHHHHHHTTT--CCTTCCCTT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCc--CccCCCCCcHHHHHHHcCC--------HHHHHHHHHcC--CCCCcCCCC
Confidence            46789999999999999999999987664  4458899999999999999        99999999998  778999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHH
Q 042244           94 GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDT  143 (368)
Q Consensus        94 G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~  143 (368)
                      |+||||+|+..|+.+++++|++++.+. +.+|.+|+||||+|+..+..++
T Consensus        73 g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           73 HITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHHHHHH
Confidence            999999999999999999999998775 8899999999999965544443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=5.6e-22  Score=168.94  Aligned_cols=128  Identities=16%  Similarity=0.127  Sum_probs=114.2

Q ss_pred             CCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccC-C
Q 042244           48 IAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRD-T  126 (368)
Q Consensus        48 ~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~  126 (368)
                      +.+|+||||+|+..|+        .++++.|++ +  ..++.+|..|+||||+|+..|+.+++++|++++.+. +.+| .
T Consensus        41 ~~~g~t~L~~A~~~g~--------~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~  108 (183)
T 3deo_A           41 VSEYETPWWTAARKAD--------EQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMR  108 (183)
T ss_dssp             HHHHHHHHHHHHHTTC--------HHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSS
T ss_pred             CCCCCCHHHHHHHcCC--------HHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCC
Confidence            5689999999999999        999999999 6  678899999999999999999999999999998776 6666 8


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      +|+||||+|+.+|+.+++++|++++.+.+. +|.+|+||||+|++.++.                  ..+.+|++.+++.
T Consensus       109 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~  169 (183)
T 3deo_A          109 GGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAREILKT------------------TPKGNPMQFGRRI  169 (183)
T ss_dssp             SSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHH
T ss_pred             CCCCHHHHHHhcCcHHHHHHHHHcCCCCcC-CCCCCCCHHHHHHHhccC------------------cccccHHHHHHHc
Confidence            899999999999999999999999998886 999999999999875433                  3467888887664

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=179.21  Aligned_cols=137  Identities=12%  Similarity=0.008  Sum_probs=120.3

Q ss_pred             CCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc------hhcCCCcHHHHHHHc---CCHHHHHHHHhhCCCCc
Q 042244           51 GSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ------RDDIGYTALYQCAVK---GNLRALKVLVKYNPDLT  121 (368)
Q Consensus        51 g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~------~d~~G~tpLh~A~~~---g~~~~v~~Ll~~~~~~~  121 (368)
                      +.++||.|+..|+        .+.++.|++.+  .+++.      .|..|+||||+|+..   |+.+++++|++++.++ 
T Consensus       151 ~~~~L~~A~~~g~--------~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-  219 (301)
T 2b0o_E          151 EPQRLWTAICNRD--------LLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-  219 (301)
T ss_dssp             CHHHHHHHHHTTC--------HHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-
T ss_pred             hHHHHhhhhhccC--------HHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-
Confidence            4567999999999        99999999988  55555      688999999999997   8999999999998765 


Q ss_pred             cccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHH
Q 042244          122 NKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLN  201 (368)
Q Consensus       122 ~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~  201 (368)
                      +.+|.+|+||||+|+.+|+.+++++|++.+++.+. +|.+|+||||+|+..++.++++.|++.+ .      ..|.||+|
T Consensus       220 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a------~~g~tpLh  291 (301)
T 2b0o_E          220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKECEELLEQAQ-A------GTFAFPLH  291 (301)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSC-CCTTSCCHHHHHHHHTCHHHHHHHHHHH-H------HTTSSCCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhc-C------CCCCChhH
Confidence            88999999999999999999999999999999886 9999999999999999999999999876 2      26899999


Q ss_pred             HHhcC
Q 042244          202 ALAEK  206 (368)
Q Consensus       202 l~~~~  206 (368)
                      +|++.
T Consensus       292 ~A~~~  296 (301)
T 2b0o_E          292 VDYSW  296 (301)
T ss_dssp             -----
T ss_pred             HHHhc
Confidence            99875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=1.1e-21  Score=175.21  Aligned_cols=155  Identities=14%  Similarity=0.059  Sum_probs=125.7

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCC
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGY   95 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~   95 (368)
                      +.+++..+...|+.+.+..+....     ...+.+|.||||+|+..|+        .++++.|++ +  ..++.+|..|+
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~-----~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~-~--~~~~~~d~~g~   78 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIA-----ADVVSEYETPWWTAARKAD--------EQALSQLLE-D--RDVDAVDENGR   78 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSC-----HHHHHHHHHHHHHHHTTTC--------HHHHHHTTT-T--CCTTCBCTTSC
T ss_pred             CccHHHHHHHcCCCcccccccccc-----cccccCCCCHHHHHHHcCC--------HHHHHHHHc-C--CCCCCcCCCCC
Confidence            344455555555544433322221     2235679999999999999        999999999 6  67899999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCCCCccccC-CCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCc
Q 042244           96 TALYQCAVKGNLRALKVLVKYNPDLTNKRD-TLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATL  174 (368)
Q Consensus        96 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~  174 (368)
                      ||||+|+..|+.+++++|++++.++ +.+| ..|+||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||+|+..++
T Consensus        79 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~~  156 (244)
T 3ui2_A           79 TALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAREILK  156 (244)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHHT
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHHHh
Confidence            9999999999999999999998776 6666 7899999999999999999999999998886 99999999999986322


Q ss_pred             hHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          175 YDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       175 ~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                                        +..+.||+|++++.
T Consensus       157 ------------------~~~~~~~l~~a~~~  170 (244)
T 3ui2_A          157 ------------------TTPKGNPMQFGRRI  170 (244)
T ss_dssp             ------------------TCCCSSHHHHHHHH
T ss_pred             ------------------ccCCCCHHHHHHHc
Confidence                              25678999998764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.84  E-value=1.3e-22  Score=192.07  Aligned_cols=124  Identities=14%  Similarity=0.094  Sum_probs=103.5

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhc--
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQ--   89 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~--   89 (368)
                      .+..|.||||.|++.|+.++|+.|++.+++......+..+.||||+||..|+        .++++.|++++  ..++.  
T Consensus       124 ~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~--------~eiv~~Ll~~g--a~~~~~~  193 (376)
T 2aja_A          124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH--------LHVLNRLCELA--PTEATAM  193 (376)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTC--------HHHHHHHHHSC--GGGHHHH
T ss_pred             hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCC--------HHHHHHHHHcC--Cccchhc
Confidence            3446778999999999999999999998642101112222999999999999        99999999998  55565  


Q ss_pred             hhcCCCcHHHHHH-HcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCC
Q 042244           90 RDDIGYTALYQCA-VKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHG  153 (368)
Q Consensus        90 ~d~~G~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~  153 (368)
                      +|.+|.||||+|+ ..|+.+++++|++.+.        .|.||||+|+.+|+.+++++|++.+.+
T Consensus       194 ~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~  250 (376)
T 2aja_A          194 IQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNR  250 (376)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcc
Confidence            8999999999999 9999999999998542        389999999999999999999987653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=2.2e-20  Score=169.97  Aligned_cols=128  Identities=19%  Similarity=0.247  Sum_probs=116.0

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHcCCccc----ccccCCCCCcHHHHHHHc---CCcccccCChHHHHHHHHhcCCchhhh
Q 042244           16 RYWPLYRMIEKNDWRGVEDFVTNDPDAL----TAKTIAPGSMTIFHAIVE---LWVDVESDDATCLLDKLASKVDPQTLE   88 (368)
Q Consensus        16 g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~----~~~~~~~g~tpLh~A~~~---g~~~~~~~~~~~~v~~Ll~~~~p~~~~   88 (368)
                      ..++|+.|+..|+.+.++.+++.+++..    ....|..|+||||+|+..   |+        .++++.|++.+  .+++
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~--------~~~v~~Ll~~g--a~in  199 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS--------LHIVDFLVQNS--GNLD  199 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT--------HHHHHHHHHHC--SCTT
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccch--------HHHHHHHHHCC--CCcc
Confidence            4579999999999999999999877643    133478899999999999   88        99999999998  7899


Q ss_pred             chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCC
Q 042244           89 QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGV  154 (368)
Q Consensus        89 ~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~  154 (368)
                      .+|..|+||||+|+..|+.+++++|++++.++ +.+|.+|+||||+|+..|+.+++++|++.+++.
T Consensus       200 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999998775 899999999999999999999999999987764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=1.4e-20  Score=177.53  Aligned_cols=144  Identities=13%  Similarity=0.106  Sum_probs=79.3

Q ss_pred             CCCcHHHHHHHc-CCcccccCChHHHHHHHHhcCCchhhhchh--cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           50 PGSMTIFHAIVE-LWVDVESDDATCLLDKLASKVDPQTLEQRD--DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        50 ~g~tpLh~A~~~-g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d--~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      .+.|+||.|+.. |+        .++++.|++.+  .+++..|  ..|.||||+|+..|+.+++++|++++.++ +.+|.
T Consensus       198 ~~~t~L~~Aa~~~g~--------~~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~  266 (368)
T 3jue_A          198 HPGALLFRASGHPPS--------LPTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADS  266 (368)
T ss_dssp             CHHHHHHHHTSSSCC--------HHHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             CCCcHHHHHHHccCC--------HHHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCC
Confidence            445666666666 66        66666666665  4455555  56666666666666666666666665543 56666


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCc--ccccCCCCCCcHHHHHh
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPT--IGRDNIDSRRIVLNALA  204 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~Tpl~l~~  204 (368)
                      +|+||||+|+..|+.+++++|++.+++.+. +|.+|.||||+|+..++.+++++|++.+..  .....+..+.|+++++.
T Consensus       267 ~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~-~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          267 AGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHCcCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            666666666666666666666666666554 666666666666666666666666654321  22234455666666554


Q ss_pred             c
Q 042244          205 E  205 (368)
Q Consensus       205 ~  205 (368)
                      .
T Consensus       346 ~  346 (368)
T 3jue_A          346 D  346 (368)
T ss_dssp             -
T ss_pred             H
Confidence            4

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=2.3e-20  Score=140.70  Aligned_cols=92  Identities=24%  Similarity=0.294  Sum_probs=75.9

Q ss_pred             CCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCC
Q 042244           50 PGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDS  129 (368)
Q Consensus        50 ~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~  129 (368)
                      +|+||||+|+..|+        .++++.|++.+  .+++.+|..|+||||+|+..|+.+++++|++++.+. +.+|.+|+
T Consensus         1 ~g~t~L~~A~~~~~--------~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~   69 (93)
T 1n0q_A            1 NGRTPLHLAARNGH--------LEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGR   69 (93)
T ss_dssp             --CCHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             CCCcHHHHHHHcCC--------HHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCC
Confidence            47888888888888        88888888887  667888888888888888888888888888887664 77888888


Q ss_pred             cHHHHHHhhCCHHHHHHHHhhCC
Q 042244          130 LPVIQAAYHGHKDTFQYLREVTH  152 (368)
Q Consensus       130 tpLh~Aa~~g~~~~v~~Ll~~~~  152 (368)
                      ||||+|+..|+.+++++|++.++
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           70 TPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC
Confidence            88888888888888888887765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=2.2e-20  Score=176.25  Aligned_cols=117  Identities=15%  Similarity=0.050  Sum_probs=99.9

Q ss_pred             hchhcCCCcHHHHHHHc-CCHHHHHHHHhhCCCCccccC--CCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCch
Q 042244           88 EQRDDIGYTALYQCAVK-GNLRALKVLVKYNPDLTNKRD--TLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGAN  164 (368)
Q Consensus        88 ~~~d~~G~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  164 (368)
                      +..+..+.|+||.|+.. |+.++++.|++.+.++ +..|  .+|.||||+|+..|+.+++++|++.+.+.+. +|.+|+|
T Consensus       193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~-~d~~G~T  270 (368)
T 3jue_A          193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRG  270 (368)
T ss_dssp             ----CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCC
T ss_pred             ccccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCCCC
Confidence            44455677899999998 9999999999988765 6666  7899999999999999999999999888886 8999999


Q ss_pred             HHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          165 MLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       165 ~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |||+|+..|+.+++++|++.+ .+.+.+|.+|.||||+|+...
T Consensus       271 pLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g  312 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETA  312 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCC
Confidence            999999999999999999886 888889999999999988764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=3.4e-19  Score=162.06  Aligned_cols=123  Identities=14%  Similarity=0.071  Sum_probs=112.8

Q ss_pred             CcHHHHHHHcCCcccccCChHHHHHHHHhcCCchh-----hhchhcCCCcHHHHHHHc---CCHHHHHHHHhhCCCCccc
Q 042244           52 SMTIFHAIVELWVDVESDDATCLLDKLASKVDPQT-----LEQRDDIGYTALYQCAVK---GNLRALKVLVKYNPDLTNK  123 (368)
Q Consensus        52 ~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~-----~~~~d~~G~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~  123 (368)
                      .++||.|+..|+        .+.++.+++.+ .+.     ++..|..|+||||+|+..   |+.+++++|++++.++ +.
T Consensus       131 l~~l~~a~~~~d--------~~~~~~ll~~g-~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~  200 (278)
T 1dcq_A          131 LHSLCEAVKTRD--------IFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DK  200 (278)
T ss_dssp             HHHHHHHHHTTC--------HHHHHHHHHTT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TC
T ss_pred             hhhhhhHhhhcc--------cHHHHHHHHhh-cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cc
Confidence            368999999999        99999999988 332     445588999999999999   8999999999998775 89


Q ss_pred             cCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          124 RDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       124 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      +|.+|+||||+|+.+|+.+++++|++.+++.+. +|.+|+||||+|+..|+.++++.|++.+
T Consensus       201 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          201 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-ccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999999999999887 9999999999999999999999999886

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=7.9e-20  Score=143.21  Aligned_cols=107  Identities=21%  Similarity=0.229  Sum_probs=76.8

Q ss_pred             cCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCC
Q 042244           47 TIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        47 ~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      .|.+|+||||+||..|+        .++++.|++.+  ..++.+|..|+||||+|+..|+.+++++|++.+.+. +.+|.
T Consensus         5 ~d~~g~t~L~~A~~~~~--------~~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~   73 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGH--------AEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSK   73 (115)
T ss_dssp             CSCSSCCHHHHHHHHTC--------HHHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCT
T ss_pred             cCCCCCCHHHHHHHcCC--------HHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCC
Confidence            36677777777777777        77777777776  556677777777777777777777777777776554 66777


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchH
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANM  165 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  165 (368)
                      +|+||||+|+.+++.+++++|++++++.+. ++..|.+|
T Consensus        74 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~-~~~~~~~~  111 (115)
T 2l6b_A           74 DGNTPEHLAKKNGHHEIVKLLDAKGADVNA-RSWGSSHH  111 (115)
T ss_dssp             TCCCTTHHHHTTTCHHHHHHHHTTSSSHHH-HSCCCC--
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCc-CCcccccc
Confidence            777777777777777777777777776665 66666665

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=3.7e-19  Score=134.00  Aligned_cols=91  Identities=26%  Similarity=0.312  Sum_probs=85.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHh
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDA  172 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~  172 (368)
                      +|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+.+|+.+++++|++.+.+.+. +|.+|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHc
Confidence            4899999999999999999999998765 88999999999999999999999999999998886 999999999999999


Q ss_pred             CchHHHHHHHHhC
Q 042244          173 TLYDVALDLLKLY  185 (368)
Q Consensus       173 ~~~~~~~~Ll~~~  185 (368)
                      |+.++++.|++.+
T Consensus        79 ~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           79 GHLEVVKLLLEAG   91 (93)
T ss_dssp             TCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcC
Confidence            9999999999876

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.8e-19  Score=141.11  Aligned_cols=109  Identities=18%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHH
Q 042244           89 QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSR  168 (368)
Q Consensus        89 ~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  168 (368)
                      .+|.+|+||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+..++.+++++|++.+.+... +|.+|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-CCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHH
Confidence            57899999999999999999999999998764 88999999999999999999999999999998876 89999999999


Q ss_pred             HHHhCchHHHHHHHHhCCcccccCCCCCCcHH
Q 042244          169 LIDATLYDVALDLLKLYPTIGRDNIDSRRIVL  200 (368)
Q Consensus       169 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl  200 (368)
                      |+..++.++++.|++.+ .+.+.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence            99999999999999887 88999999998874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=1.1e-17  Score=130.02  Aligned_cols=92  Identities=17%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             cccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCcccc
Q 042244           45 AKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKR  124 (368)
Q Consensus        45 ~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  124 (368)
                      ...|.+|.||||+|+..|+        .++++.|++.+  .+++.+|..|+||||+|+..|+.+++++|++++.+. +.+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~--------~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~   86 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQ--------DDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQ   86 (110)
T ss_dssp             ----CCHHHHHHHHHHHTC--------HHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             cccCCccchHHHHHHHcCC--------HHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccc
Confidence            3447777888888888888        88888888776  567777777888888888888888888888776554 677


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHH
Q 042244          125 DTLDSLPVIQAAYHGHKDTFQYL  147 (368)
Q Consensus       125 d~~G~tpLh~Aa~~g~~~~v~~L  147 (368)
                      |.+|+||||+|+.+|+.+++++|
T Consensus        87 d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           87 DKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHh
Confidence            77788888888888887777765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=3.4e-17  Score=127.32  Aligned_cols=96  Identities=22%  Similarity=0.188  Sum_probs=83.0

Q ss_pred             chhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCc
Q 042244           84 PQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGA  163 (368)
Q Consensus        84 p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~  163 (368)
                      |......|.+|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+.+|+.+++++|++.+.+.+. +|.+|+
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~   91 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGK   91 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSC
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCC
Confidence            4557788999999999999999999999999998765 88999999999999999999999999999988876 999999


Q ss_pred             hHHHHHHHhCchHHHHHH
Q 042244          164 NMLSRLIDATLYDVALDL  181 (368)
Q Consensus       164 t~Lh~a~~~~~~~~~~~L  181 (368)
                      ||||+|+..|+.++++.|
T Consensus        92 tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           92 TAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHh
Confidence            999999999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
             +  +GY+ L+Q A +G+   + +L+K      N+  +  + P+  A   G+      L
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVL 382

Query: 148 REVT 151
           + VT
Sbjct: 383 KVVT 386

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 7e-06
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 87  LEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQY 146
               +    T L+  A  G+    K L++    + N +   D  P+  AA  GH +  + 
Sbjct: 26  PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKL 84

Query: 147 L 147
           L
Sbjct: 85  L 85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 96  TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVD 155
           T L+  +  G+L  +K L++      N  +     P+  AA  GH +  +YL  + +   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYL--LQNKAK 58

Query: 156 I-YSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNA 202
           +     D    L         ++   LL+               +  A
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 106

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 9/138 (6%)

Query: 19  PLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKL 78
            L    EK     ++  +      + A      +  I   +     DVE      LLD  
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE-AITHLLLDHG 209

Query: 79  ASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYH 138
           A       +  R + G T L     K +L  ++ L++      N  D+     ++ A   
Sbjct: 210 AD------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263

Query: 139 GHKDTFQYLREVTHGVDI 156
             K   + L     G   
Sbjct: 264 KLKKIAELL--CKRGAST 279

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 89  QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR 148
           ++D+ G T +   A +G +  +  L++    +    D  D      A  + H +      
Sbjct: 216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFD 274

Query: 149 E 149
            
Sbjct: 275 R 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           +     G TAL+  A   N+  +K LV       +K+D     P++ AA  G  +   YL
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 148 REVTHGVDIYSGND 161
             +  G  + + + 
Sbjct: 241 --IQQGASVEAVDA 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 91  DDIGYTALYQCAVKGNLRALKVLVKY--NPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLR 148
            + G TAL+   +  +   L  L+ +    +  + ++ L    +  AA  G   T + L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 149 EVTH 152
               
Sbjct: 66  AAGA 69

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 8/54 (14%), Positives = 21/54 (38%)

Query: 96  TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE 149
             L+Q  ++     ++ L+   P L  ++D    +P+  +      +   +L  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 16/161 (9%), Positives = 44/161 (27%), Gaps = 5/161 (3%)

Query: 3   INSDDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVEL 62
               D   +    +        +   +  + D++        +         I  + +  
Sbjct: 133 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 192

Query: 63  WVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLV--KYNPDL 120
                      L+  +  K   + ++   +   +       +     L+ L       ++
Sbjct: 193 CSAAAKYYLDILMGWIV-KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 251

Query: 121 TNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGND 161
            N +D+     +  AA  G+      L  + +G D +  N 
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDAL--LDYGADPFIANK 290

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 88  EQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYL 147
           + +DD   T L+  A +G+  A K L+    +     D +D LP   A+   H D  + L
Sbjct: 150 DAQDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.68

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=234.65  Aligned_cols=183  Identities=13%  Similarity=0.090  Sum_probs=152.4

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCccccc-------------------------CCh
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVES-------------------------DDA   71 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~-------------------------~~~   71 (368)
                      ++.||.++..|+.+.++.+++.+|... ...|.+|+||||+||..|+.++++                         .++
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~-~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcC-cCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            455666666666666666666655555 444666666666666666655551                         134


Q ss_pred             HHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhC
Q 042244           72 TCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVT  151 (368)
Q Consensus        72 ~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~  151 (368)
                      .++++.|++++  .+++.+|.+|+||||+|+..|+.+++++|++++.+. +.+|.+|.||||+|+..++.+++++|.+.+
T Consensus        83 ~~i~~~Ll~~~--~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~  159 (223)
T d1uoha_          83 DEIVKALLGKG--AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYK  159 (223)
T ss_dssp             HHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cchhHHHhccC--ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhcccc
Confidence            89999999988  678899999999999999999999999999998765 889999999999999999999999999999


Q ss_pred             CCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhc
Q 042244          152 HGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAE  205 (368)
Q Consensus       152 ~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~  205 (368)
                      .+.+. +|.+|+||||.|+..|+.++++.|++.+ .+.+.+|++|+||+|+|+.
T Consensus       160 ~~i~~-~d~~g~TpL~~Aa~~g~~~~v~~LL~~G-ad~~~~d~~g~tpl~~A~~  211 (223)
T d1uoha_         160 ASTNI-QDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVAKG  211 (223)
T ss_dssp             CCSCC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHCCT
T ss_pred             ceeee-ccCCCCceeccccccCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHC
Confidence            88876 9999999999999999999999999886 8999999999999998844

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.4e-31  Score=237.85  Aligned_cols=184  Identities=15%  Similarity=0.031  Sum_probs=163.6

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHc--CCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhch
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTN--DPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQR   90 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~--~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~   90 (368)
                      +.+|.||||.|++.|+.++++.|++.  ++..+ ...|..|+||||+||..|+        .++++.|++.+  ..++.+
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i-~~~~~~g~TpL~~A~~~g~--------~~iv~~Ll~~g--a~i~~~   74 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL-DLQNDLGQTALHLAAILGE--------ASTVEKLYAAG--AGVLVA   74 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG-GCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--CCSSCC
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-cCcCCCCCCccchHHhhcc--------ccccccccccc--cccccc
Confidence            35799999999999999999999987  45555 5568899999999999999        99999999998  788999


Q ss_pred             hcCCCcHHHHHHHcCCHHHHHHHHhhCC----------------------------------------------CCcccc
Q 042244           91 DDIGYTALYQCAVKGNLRALKVLVKYNP----------------------------------------------DLTNKR  124 (368)
Q Consensus        91 d~~G~tpLh~A~~~g~~~~v~~Ll~~~~----------------------------------------------~~~~~~  124 (368)
                      |.+|+||||+|+..|+.++++.|++...                                              ..++.+
T Consensus        75 d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~  154 (255)
T d1oy3d_          75 ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE  154 (255)
T ss_dssp             CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC
T ss_pred             ccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccc
Confidence            9999999999999999999999976321                                              113567


Q ss_pred             CCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHh
Q 042244          125 DTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALA  204 (368)
Q Consensus       125 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~  204 (368)
                      |.+|+||||+|+++++.+++++|++.+.+....++..|.||||.|++.++.++++.|++.+ .+++.+|++|+||||+|+
T Consensus       155 d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g-adin~~d~~g~t~L~~A~  233 (255)
T d1oy3d_         155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSAL  233 (255)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH
T ss_pred             cccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH
Confidence            8899999999999999999999999988877656789999999999999999999999876 889999999999999998


Q ss_pred             cCCC
Q 042244          205 EKPY  208 (368)
Q Consensus       205 ~~~~  208 (368)
                      ++.+
T Consensus       234 ~~~~  237 (255)
T d1oy3d_         234 LRPN  237 (255)
T ss_dssp             TSSC
T ss_pred             HCCC
Confidence            8743

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.2e-29  Score=218.09  Aligned_cols=179  Identities=16%  Similarity=0.170  Sum_probs=138.6

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCC-chhhhchhcC--
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVD-PQTLEQRDDI--   93 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~-p~~~~~~d~~--   93 (368)
                      ++|||.||+.|+.+.++.|++..|... ...|.+|+||||+|+..|+        .++++.|++.+. +...+..|..  
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~G~TpL~~A~~~g~--------~~iv~~Ll~~ga~~~~~~~~~~~~~   71 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQA--------HEITSFLLSKMENVNLDDYPDDSGW   71 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTC--------HHHHHHHHTTCTTCCGGGCCCTTSC
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHHcCC--------ccccchhhhhhcccccccccccccc
Confidence            478888888888888888888877766 5668888888888888888        888888887651 1112233334  


Q ss_pred             ---------------------------------CCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCC
Q 042244           94 ---------------------------------GYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGH  140 (368)
Q Consensus        94 ---------------------------------G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~  140 (368)
                                                       +.++++.++..++.++++.|++.+.. .+.+|.+|+||||+|+.+|+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~  150 (229)
T d1ixva_          72 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGS  150 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhccc
Confidence                                             44555555555555556666655544 36688899999999999999


Q ss_pred             HHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhc
Q 042244          141 KDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAE  205 (368)
Q Consensus       141 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~  205 (368)
                      .+++++|++.+......+|.+|+||||+|+..|+.+++++|+++.+.+++.+|++|+||+|+|.+
T Consensus       151 ~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         151 LKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             ccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence            99999999987544334889999999999999999999999987568999999999999998764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.4e-29  Score=217.47  Aligned_cols=181  Identities=16%  Similarity=0.037  Sum_probs=156.6

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHc---CCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTN---DPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~---~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      +|.||||.|+..|+.+.++.+++.   ++..+ ...|.+|+||||+||..|+        .++++.|++.+  .+++.+|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~--------~~iv~~L~~~g--~d~~~~d   69 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQ--------PEIAEALLGAG--CDPELRD   69 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTC--------HHHHHCCCSCC--CCSCCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccc--------ccccccccccc--ccccccc
Confidence            589999999999998777766543   23334 4458899999999999999        99999999998  7789999


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCC-----CCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNP-----DLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANML  166 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~-----~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  166 (368)
                      ..|.||||.|+..|+.++++.|++.+.     ........+|.||||.|+..++.++++++++.+.......+.+|.|||
T Consensus        70 ~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L  149 (221)
T d1iknd_          70 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL  149 (221)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH
T ss_pred             cccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcc
Confidence            999999999999999999999998743     233455667899999999999999999999998887665667899999


Q ss_pred             HHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          167 SRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       167 h~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      |.|++.|+.++++.|++.+ .+.+.+|.+|+||+|+|++..
T Consensus       150 ~~A~~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~A~~~~  189 (221)
T d1iknd_         150 HLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRP  189 (221)
T ss_dssp             HHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSS
T ss_pred             ccccccccHHHHHHHHhcC-CcccccCCCCCCHHHHHHHCC
Confidence            9999999999999999886 889999999999999988765

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.4e-27  Score=211.79  Aligned_cols=167  Identities=13%  Similarity=-0.022  Sum_probs=145.4

Q ss_pred             chhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCC-----
Q 042244            9 EEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVD-----   83 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~-----   83 (368)
                      .+..+..|.||||.|+..|+.++++.|++.+.+.  ...|.+|.||||+|+..|+        .++++.|++...     
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i--~~~d~~g~tpL~~A~~~~~--------~~~~~~Ll~~~~~~~~~  107 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV--LVAERGGHTALHLACRVRA--------HTCACVLLQPRPSHPRD  107 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--SCCCTTSCCHHHHHTTTTC--------HHHHHHHSSSCCSSCCC
T ss_pred             ccCcCCCCCCccchHHhhcccccccccccccccc--cccccccchhhhhhhccCc--------hHHHHHHHhhccchhcc
Confidence            3445678999999999999999999999986554  3458899999999999999        777776654321     


Q ss_pred             ----------------------------------------chhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccc
Q 042244           84 ----------------------------------------PQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNK  123 (368)
Q Consensus        84 ----------------------------------------p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~  123 (368)
                                                              ...++.+|.+|.||||+|+..|+.+++++|++.+.+....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~  187 (255)
T d1oy3d_         108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP  187 (255)
T ss_dssp             C-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             cchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccc
Confidence                                                    1234667889999999999999999999999998887667


Q ss_pred             cCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCC
Q 042244          124 RDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYP  186 (368)
Q Consensus       124 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~  186 (368)
                      .+..|.||||+|++.|+.+++++|++++.+.+. +|.+|+||||+|++.++.++++.|++.|.
T Consensus       188 ~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~-~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTA-RMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             ccccccccccccccccHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            788999999999999999999999999988886 99999999999999999999999999873

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=2e-27  Score=214.96  Aligned_cols=179  Identities=14%  Similarity=0.084  Sum_probs=156.5

Q ss_pred             hccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           13 YCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        13 ~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      ++.+.|+|+.||..|+.+.|+.|++.+.+.  ...|.+|+||||+|+..|+        .++++.|++.+  ......+.
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv--n~~d~~G~T~L~~A~~~g~--------~eiv~~Ll~~~--~~~~~~~~  104 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADI--NYANVDGLTALHQACIDDN--------VDMVKFLVENG--ANINQPDN  104 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT--TCBCTTCCBHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCCT
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCcHHHHHHhcCC--------ceeeeeecccc--cccccccc
Confidence            355679999999999999999999986654  3458999999999999999        99999999998  55677788


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCC-----------------------------------------------------
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPD-----------------------------------------------------  119 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~-----------------------------------------------------  119 (368)
                      .+.+|||.|+..|+.++++.|++.+..                                                     
T Consensus       105 ~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  184 (291)
T d1s70b_         105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW  184 (291)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhh
Confidence            889999999999999999888865321                                                     


Q ss_pred             ------CccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCC
Q 042244          120 ------LTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNI  193 (368)
Q Consensus       120 ------~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~  193 (368)
                            .....+..|.||||.|+..|+.++++.|++.+.+.+. ++.+|+||||+|++.|+.++++.|++.+ .+++.+|
T Consensus       185 ~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~-~~~~g~TpL~~A~~~g~~~iv~lLl~~G-adv~~~d  262 (291)
T d1s70b_         185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVN  262 (291)
T ss_dssp             HHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             hcccccccccccCCCCChhhHHHHcCChhhhcccccceecccc-cccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcC
Confidence                  1234567889999999999999999999999998876 8999999999999999999999999887 7889999


Q ss_pred             CCCCcHHHHHhc
Q 042244          194 DSRRIVLNALAE  205 (368)
Q Consensus       194 ~~g~Tpl~l~~~  205 (368)
                      ++|+||||+|++
T Consensus       263 ~~G~TaL~~A~e  274 (291)
T d1s70b_         263 KVGQTAFDVADE  274 (291)
T ss_dssp             TTSCCTTTSCCS
T ss_pred             CCCCCHHHHHHH
Confidence            999999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.8e-27  Score=213.29  Aligned_cols=182  Identities=10%  Similarity=0.027  Sum_probs=153.7

Q ss_pred             ccCChHHHHHHHhCCHHHHHHHHHcCCc-------ccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchh
Q 042244           14 CARYWPLYRMIEKNDWRGVEDFVTNDPD-------ALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQT   86 (368)
Q Consensus        14 ~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~-------~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~   86 (368)
                      ..|.||||.|+..|+.++++.|+...+.       .+ ...|.+|+||||+|+..|+        .++++.|++++  .+
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~--------~~iv~~Ll~~G--ad   99 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARR--------RRLVAYLMKAG--AD   99 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTT--CC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeecccccccc--------ccccccccccc--cc
Confidence            4599999999999999999888754221       12 3348899999999999999        99999999998  77


Q ss_pred             hhchhcCCCcHHHHHHHcCCHHHHHHHHhhC----------------------------------------------CCC
Q 042244           87 LEQRDDIGYTALYQCAVKGNLRALKVLVKYN----------------------------------------------PDL  120 (368)
Q Consensus        87 ~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~----------------------------------------------~~~  120 (368)
                      ++.+|.+|+||+|+|+..++.++++.+....                                              ...
T Consensus       100 ~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (277)
T d2fo1e1         100 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR  179 (277)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred             cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccc
Confidence            8999999999999999999988888776420                                              011


Q ss_pred             ccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHH
Q 042244          121 TNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVL  200 (368)
Q Consensus       121 ~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl  200 (368)
                      .+..+..|+||||+++..++.+++++++.........+|..|+||||+|++.|+.+++++|++.+ .+++.+|.+|+|||
T Consensus       180 ~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g-adin~~d~~G~T~L  258 (277)
T d2fo1e1         180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTAR  258 (277)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHH
T ss_pred             ccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCcCCCCCCHH
Confidence            24466689999999999999999998776654443348999999999999999999999999986 88999999999999


Q ss_pred             HHHhcCC
Q 042244          201 NALAEKP  207 (368)
Q Consensus       201 ~l~~~~~  207 (368)
                      |+|+++.
T Consensus       259 ~~A~~~~  265 (277)
T d2fo1e1         259 QLAQANN  265 (277)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            9999875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5e-27  Score=204.76  Aligned_cols=162  Identities=15%  Similarity=0.090  Sum_probs=142.1

Q ss_pred             chhhhccCChHHHHHHHhCCHHHHHHHHHcCCccc-------------------------------ccccCCCCCcHHHH
Q 042244            9 EEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDAL-------------------------------TAKTIAPGSMTIFH   57 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~-------------------------------~~~~~~~g~tpLh~   57 (368)
                      ....|..|+||||.|+..|+.|+++.+++......                               ....|.+|.||||+
T Consensus        30 ~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~  109 (223)
T d1uoha_          30 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY  109 (223)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhH
Confidence            33457789999999999999998888877632110                               02457889999999


Q ss_pred             HHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHh
Q 042244           58 AIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAY  137 (368)
Q Consensus        58 A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~  137 (368)
                      |+..|+        .++++.|++.+  .+++.+|..|.||||+|+..++.+++++|.+.+.+. +.+|.+|+||||+|+.
T Consensus       110 A~~~~~--------~e~~~~Ll~~g--~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~  178 (223)
T d1uoha_         110 AASKNR--------HEIAVMLLEGG--ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACD  178 (223)
T ss_dssp             HHHHTC--------HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHH
T ss_pred             HHHcCC--------HHHHHHHHHCC--CCCCCcCCCCCccchhhhhcCCcchhhhhcccccee-eeccCCCCceeccccc
Confidence            999999        99999999998  778999999999999999999999999999988764 8999999999999999


Q ss_pred             hCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHH
Q 042244          138 HGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLK  183 (368)
Q Consensus       138 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~  183 (368)
                      +|+.+++++|++.+.+.+. +|.+|+||||+| +.|+.++++.|++
T Consensus       179 ~g~~~~v~~LL~~Gad~~~-~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         179 EERVEEAKLLVSQGASIYI-ENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHCCCCCCC-CCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999999999999999887 999999999998 5789999988874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.3e-26  Score=186.98  Aligned_cols=152  Identities=19%  Similarity=0.158  Sum_probs=136.6

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcH
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTA   97 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tp   97 (368)
                      +.||.||..|+.+.|+.|++.++... ...|..|+||||+|+ .|+        .++++.|++.+  ..++.++..|.+|
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~~g~t~L~~A~-~~~--------~~~v~~Ll~~~--~~~~~~~~~~~~~   71 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMM-FGS--------TAIALELLKQG--ASPNVQDTSGTSP   71 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHHSC-TTC--------HHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC-CccCCCCCccccccc-ccc--------ccccccccccc--ccccccccccccc
Confidence            45999999999999999999865555 455899999999987 488        99999999998  6788999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHH
Q 042244           98 LYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDV  177 (368)
Q Consensus        98 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~  177 (368)
                      ++.++..++.++++.++++++++ +.+|.+|+||||+|++.|+.+++++|+ .+.+... +|.+|+||||+|++.|+.++
T Consensus        72 l~~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~-~d~~G~TpL~~A~~~g~~~i  148 (156)
T d1bd8a_          72 VHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR-RDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC-CCTTSCCHHHHHHHSCCHHH
T ss_pred             ccccccccccccccccccccccc-ccccCCCCeeecccccccccccccccc-ccccccc-cCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999998765 889999999999999999999999887 5666665 99999999999999999999


Q ss_pred             HHHHHHh
Q 042244          178 ALDLLKL  184 (368)
Q Consensus       178 ~~~Ll~~  184 (368)
                      ++.|++.
T Consensus       149 v~~Ll~h  155 (156)
T d1bd8a_         149 VDILQGH  155 (156)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9998864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.3e-26  Score=193.88  Aligned_cols=179  Identities=14%  Similarity=0.071  Sum_probs=150.7

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHc---CCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTN---DPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~---~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      +|+||||.|++.|+.++++.|++.   ....+ ...|.+|+||||+|+..|+        .++++.|++.+  ...+..+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~--------~~iv~~Ll~~g--a~~~~~~   70 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTL--------PSVVRLLVTAG--ASPMALD   70 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTCCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccc--------ccccccccccc--ccccccc
Confidence            599999999999999999999863   22222 4458899999999999999        99999999987  5666777


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhh-------------------------------------CCCCccccCCCCCcHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKY-------------------------------------NPDLTNKRDTLDSLPVIQ  134 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~-------------------------------------~~~~~~~~d~~G~tpLh~  134 (368)
                      ..|.++++.|...++.++++.....                                     ..+.....+..|.+|+|.
T Consensus        71 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  150 (228)
T d1k1aa_          71 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH  150 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             cccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHH
Confidence            7788888888887777776665542                                     223334566678999999


Q ss_pred             HHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcC
Q 042244          135 AAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEK  206 (368)
Q Consensus       135 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~  206 (368)
                      |+..+..++.+.+++.+..... +|.+|+||||.|+..|+.++++.|++.+ .+.+.+|.+|+||||+|+++
T Consensus       151 a~~~~~~~~~~~~~~~~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         151 AVENNSLSMVQLLLQHGANVNA-QMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSH
T ss_pred             HHHhhhhhhhhhhhhhcccccc-ccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhC
Confidence            9999999999999999888776 9999999999999999999999999886 78999999999999998764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.5e-26  Score=185.97  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=140.2

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcH
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTA   97 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tp   97 (368)
                      ++||.||..|+.|+|+.|++.+.+.  ...|.+|.||||+|+ .|+        .++++.|++.+  .+++.++..|.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~--n~~d~~g~TpL~~A~-~~~--------~ei~~~Ll~~~--a~~~~~~~~~~~~   69 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMK-LGN--------PEIARRLLLRG--ANPDLKDRTGFAV   69 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCC-SSC--------HHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc--CccCCcccccccccc-ccc--------ccccccccccc--cccccccccCccc
Confidence            7999999999999999999997664  445899999999886 789        99999999998  7789999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHH
Q 042244           98 LYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDV  177 (368)
Q Consensus        98 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~  177 (368)
                      ++.++..++.+.++.+++.+.+. +..|..|.+|+|+|+..++.+++++|+++++.....+|.+|+||||+|++.++.++
T Consensus        70 l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~i  148 (156)
T d1ihba_          70 IHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV  148 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999988765 88899999999999999999999999999874433499999999999999999999


Q ss_pred             HHHHHHhC
Q 042244          178 ALDLLKLY  185 (368)
Q Consensus       178 ~~~Ll~~~  185 (368)
                      +++|+++|
T Consensus       149 v~~Ll~~G  156 (156)
T d1ihba_         149 VSLMQANG  156 (156)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhcC
Confidence            99998865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.7e-25  Score=181.65  Aligned_cols=150  Identities=19%  Similarity=0.120  Sum_probs=136.7

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCc
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYT   96 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~t   96 (368)
                      .||||.|++.|+.++|+.||+.+++..   .|..|+||||+|+..++        .++++.++...  ......+..+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~   69 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGH--------FSTTEVLLRAG--VSRDARTKVDRT   69 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTC--------HHHHHHHHTTT--CCTTCCCTTCCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc---cccCCCccccccccccc--------ccccccccccc--cccccccccccc
Confidence            499999999999999999999977542   48899999999999999        99999999887  445677788899


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchH
Q 042244           97 ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYD  176 (368)
Q Consensus        97 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~  176 (368)
                      ++|.++...+.+.++.+...+.+. +.+|.+|+||||+|+..|+.+++++|++.+.+.+. +|++|.||||+|+..|+.+
T Consensus        70 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~-~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          70 PLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcc-cCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999988765 78999999999999999999999999999998886 9999999999999999999


Q ss_pred             HHHHH
Q 042244          177 VALDL  181 (368)
Q Consensus       177 ~~~~L  181 (368)
                      +++.|
T Consensus       148 iv~lL  152 (153)
T d1awcb_         148 LAEIL  152 (153)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.5e-25  Score=193.78  Aligned_cols=171  Identities=16%  Similarity=0.076  Sum_probs=147.8

Q ss_pred             cchhhhccCChHHHHHHHhCCHHHHHHHHHcC--CcccccccCCCCCcHHHHHHHcCCccccc-----------------
Q 042244            8 QEEDEYCARYWPLYRMIEKNDWRGVEDFVTND--PDALTAKTIAPGSMTIFHAIVELWVDVES-----------------   68 (368)
Q Consensus         8 ~~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~--p~~~~~~~~~~g~tpLh~A~~~g~~~~~~-----------------   68 (368)
                      .....+.+|.||||.|+..|+.++++.|++..  ++.. ...+..|.+|+|+++..+..++++                 
T Consensus        26 ~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (229)
T d1ixva_          26 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD-DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ  104 (229)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTT
T ss_pred             cccccCCCCCCHHHHHHHcCCccccchhhhhhcccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            34456788999999999999999999999984  4444 455788999999999999877661                 


Q ss_pred             ----------CChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhh
Q 042244           69 ----------DDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYH  138 (368)
Q Consensus        69 ----------~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~  138 (368)
                                .++.++++.|++.+  .....+|..|+||||+|+..|+.++++.|++.++..++.+|.+|+||||+|+.+
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~  182 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENG--ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  182 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccchhhhhhhhhhhc--ccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccc
Confidence                      24578888888887  667788999999999999999999999999998877899999999999999999


Q ss_pred             CCHHHHHHHHhh-CCCCccccCCCCchHHHHHHHhCchHHHHHHHHhC
Q 042244          139 GHKDTFQYLREV-THGVDIYSGNDGANMLSRLIDATLYDVALDLLKLY  185 (368)
Q Consensus       139 g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~  185 (368)
                      |+.+++++|+++ +.+... +|++|+||||+|+.   .++++.|++++
T Consensus       183 ~~~~~v~~Ll~~~gad~~~-~d~~g~t~l~~A~~---~~~~~~Ll~~g  226 (229)
T d1ixva_         183 GHGDAAVLLVEKYGAEYDL-VDNKGAKAEDVALN---EQVKKFFLNNV  226 (229)
T ss_dssp             TCHHHHHHHHHHHCCCSCC-CCTTSCCTGGGCSC---HHHHHHHHHHC
T ss_pred             ccHHHHHHHHHhcCCCCCC-cCCCCCCHHHHHhh---HHHHHHHHHcC
Confidence            999999999975 778876 99999999999874   57889999887

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.9e-24  Score=192.86  Aligned_cols=191  Identities=17%  Similarity=0.142  Sum_probs=141.2

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCccccc--------------------------
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVES--------------------------   68 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~--------------------------   68 (368)
                      .+.|+||.|++.|+.|+|+.|++.+++.- ...+..|+||||+|+..|+.++++                          
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din-~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            35699999999999999999999987754 455678999999999999944440                          


Q ss_pred             --------------------------------CChHHHHHHHHhcCC--------chhhhchhcCCCcHHHHHHHcCCHH
Q 042244           69 --------------------------------DDATCLLDKLASKVD--------PQTLEQRDDIGYTALYQCAVKGNLR  108 (368)
Q Consensus        69 --------------------------------~~~~~~v~~Ll~~~~--------p~~~~~~d~~G~tpLh~A~~~g~~~  108 (368)
                                                      .++.+.++.+++...        .......+..|.||||+|+++|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                                            011222222222110        0112334455778888888888888


Q ss_pred             HHHHHHhhCCCCccccCCCCCcHHHHHHhhC----CHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHh
Q 042244          109 ALKVLVKYNPDLTNKRDTLDSLPVIQAAYHG----HKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKL  184 (368)
Q Consensus       109 ~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g----~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~  184 (368)
                      ++++|++.....++..|..|.++++.+...+    ..+++++|++++.+.+. +|.+|.||||.|++.|+.++++.|++.
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~-~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC-CCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCc-cCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            8888877644445777777777777654433    34677888888777765 889999999999999999999999998


Q ss_pred             CCcccccCCCCCCcHHHHHhcCC
Q 042244          185 YPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       185 ~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      .+.+.+.+|.+|+||||+|++..
T Consensus       242 ~g~din~~d~~G~TpL~~A~~~~  264 (285)
T d1wdya_         242 EHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCcCCCCCCCCHHHHHHHcC
Confidence            77899999999999999999874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-24  Score=202.96  Aligned_cols=177  Identities=15%  Similarity=0.053  Sum_probs=158.4

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCc
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYT   96 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~t   96 (368)
                      .||||.||..|+.++|+.|++.+.+.  ...|..|+||||+||..|+        .++++.|++++  ..++.+|.+|+|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~i--n~~d~~g~TpL~~A~~~g~--------~~iv~~Ll~~g--adi~~~~~~g~t   68 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGH--------TEVAKYLLQNK--AKVNAKAKDDQT   68 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTC--------HHHHHHHHHHT--CCSSCCCTTSCC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCC--------HHHHHHHHHCc--CCCCCCCCCCCC
Confidence            49999999999999999999986554  4458999999999999999        99999999998  778999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCC--------------------------------CccccCCCCCcHHHHHHhhCCHHHH
Q 042244           97 ALYQCAVKGNLRALKVLVKYNPD--------------------------------LTNKRDTLDSLPVIQAAYHGHKDTF  144 (368)
Q Consensus        97 pLh~A~~~g~~~~v~~Ll~~~~~--------------------------------~~~~~d~~G~tpLh~Aa~~g~~~~v  144 (368)
                      |||+|+..|+.++++.|++..++                                .....|.+|.++++.|+..++.+++
T Consensus        69 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v  148 (408)
T d1n11a_          69 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA  148 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHH
Confidence            99999999999999999875332                                2345677899999999999999999


Q ss_pred             HHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          145 QYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       145 ~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ++|++.+.+... .+.+|.+|||.|+..++.++++.|+..+ ...+..+..|.||+|.+....
T Consensus       149 ~~ll~~~~~~~~-~~~~~~~~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~~~~~~  209 (408)
T d1n11a_         149 ELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQN  209 (408)
T ss_dssp             HHHHHTTCCTTC-CCSSCCCHHHHHHHTTCHHHHHHHGGGT-CCSCCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCCCCc-CCCcCchHHHHHHHcCCHHHHHHHHhcC-CcccccCCCCCCcchhhhccc
Confidence            999999988876 8899999999999999999999999886 678888999999999887754

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=189.51  Aligned_cols=167  Identities=14%  Similarity=0.057  Sum_probs=146.5

Q ss_pred             chhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCC----c
Q 042244            9 EEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVD----P   84 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~----p   84 (368)
                      .+..+..|.||||.|++.|+.++++.|++.+.+.  ...|..|.||||.|+..|+        .++++.|++.+.    .
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~--~~~d~~g~t~l~~~~~~~~--------~~~~~~l~~~~~~~~~~  101 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP--ELRDFRGNTPLHLACEQGC--------LASVGVLTQSCTTPHLH  101 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS--CCCCTTCCCHHHHHHHHTC--------HHHHHHHHHSTTTTSSS
T ss_pred             cccCCCCCCccccccccccccccccccccccccc--ccccccccccccccccccc--------ccccchhhhhccccccc
Confidence            3345678999999999999999999999986654  3458899999999999999        999999998752    1


Q ss_pred             hhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCch
Q 042244           85 QTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGAN  164 (368)
Q Consensus        85 ~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  164 (368)
                      ........+|.||||.|+..|+.+.+++|+..+.......+.+|+||||+|++.|+.+++++|++.+.+.+. +|.+|+|
T Consensus       102 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~-~~~~G~t  180 (221)
T d1iknd_         102 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR-VTYQGYS  180 (221)
T ss_dssp             CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCC-CCTTCCC
T ss_pred             ccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccc-cCCCCCC
Confidence            234455567999999999999999999999998877566677899999999999999999999999999886 9999999


Q ss_pred             HHHHHHHhCchHHHHHHHHhCC
Q 042244          165 MLSRLIDATLYDVALDLLKLYP  186 (368)
Q Consensus       165 ~Lh~a~~~~~~~~~~~Ll~~~~  186 (368)
                      |||+|++.++.+++++|++...
T Consensus       181 pl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         181 PYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             GGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCC
Confidence            9999999999999999998754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=1.5e-23  Score=179.78  Aligned_cols=182  Identities=14%  Similarity=0.062  Sum_probs=154.7

Q ss_pred             hhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchh
Q 042244           12 EYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRD   91 (368)
Q Consensus        12 ~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d   91 (368)
                      .+.+|.||||.||+.|+.|+++.|++.+++.  ...+..+.++++.++..++        .+......... .......+
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~--n~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~   87 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADA--NSQDNTGRTPLHAAVAADA--------MGVFQILLRNR-ATNLNARM   87 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTC--------HHHHHHHHTCT-TCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhcccc--ccccccccccccccccccc--------ccccccccccc-cccccccc
Confidence            4678999999999999999999999986654  3448889999999999999        77776666655 44455666


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244           92 DIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus        92 ~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      ..|.++.+.+.........+.|.+.+.+. +.+|..|+||||.++.++..++++.+++.+.+.+. .|.+|.||||.|+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~-~d~~g~TpL~~A~~  165 (209)
T d1ot8a_          88 HDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA-QDDKDETPLFLAAR  165 (209)
T ss_dssp             TTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeeccccccccc-cccccccccchhcc
Confidence            77888999888888888888888877654 77888999999999999999999999999888776 88999999999999


Q ss_pred             hCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          172 ATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       172 ~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      .|+.++++.|++.+ .+++.+|.+|+||+|+|+++.
T Consensus       166 ~g~~~~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~  200 (209)
T d1ot8a_         166 EGSYEASKALLDNF-ANREITDHMDRLPRDVASERL  200 (209)
T ss_dssp             TTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999876 778889999999999998864

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.1e-23  Score=196.58  Aligned_cols=185  Identities=16%  Similarity=0.100  Sum_probs=155.5

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCccc-------------------------------ccccCCCCCcHHHHH
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDAL-------------------------------TAKTIAPGSMTIFHA   58 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~-------------------------------~~~~~~~g~tpLh~A   58 (368)
                      ...+.+|.+|||.|+..|+.++++.|++.+.+..                               ....+..|.||||+|
T Consensus       159 ~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  238 (408)
T d1n11a_         159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA  238 (408)
T ss_dssp             TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHH
Confidence            3445678899999999999999999988744321                               011234455666666


Q ss_pred             HHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhh
Q 042244           59 IVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYH  138 (368)
Q Consensus        59 ~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~  138 (368)
                      +..++        .++++.+++..  ...+..|..|.||+|.|+..++.+++++|++++.+. +..+..+.||||.++..
T Consensus       239 ~~~~~--------~~~~~~~~~~~--~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~  307 (408)
T d1n11a_         239 AQEGH--------AEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHY  307 (408)
T ss_dssp             HHTTC--------HHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHS
T ss_pred             HHhCc--------HhHhhhhhccc--cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhccc
Confidence            66666        78888888776  567788899999999999999999999999988765 78888999999999999


Q ss_pred             CCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          139 GHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       139 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      ++.++++++++.+.+.+. +|.+|+||||.|++.|+.++++.|++.| ++.+.+|++|+||+|+|+++.
T Consensus       308 ~~~~~~~~ll~~g~~in~-~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G-Ad~n~~d~~G~t~L~~A~~~~  374 (408)
T d1n11a_         308 GNIKLVKFLLQHQADVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLG  374 (408)
T ss_dssp             SCSHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTT
T ss_pred             Ccceeeeeeccccccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999988876 9999999999999999999999999987 889999999999999998874

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=1.9e-23  Score=186.62  Aligned_cols=170  Identities=16%  Similarity=0.108  Sum_probs=138.3

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCccccc----------------------
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVES----------------------   68 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~----------------------   68 (368)
                      ..+..|.||||.|++.|+.++++.|++.+.+.  ...|.+|.||||+|+..++.+++.                      
T Consensus        69 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~--n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  146 (277)
T d2fo1e1          69 AMDCDENTPLMLAVLARRRRLVAYLMKAGADP--TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA  146 (277)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred             ccCCCCCeeecccccccccccccccccccccc--ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchh
Confidence            35678999999999999999999999986554  344889999999999999954430                      


Q ss_pred             ---------CChHHHHHHHHhcCC------chhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHH
Q 042244           69 ---------DDATCLLDKLASKVD------PQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVI  133 (368)
Q Consensus        69 ---------~~~~~~v~~Ll~~~~------p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh  133 (368)
                               .+....++.+.+...      ....+..+..|+||||.++..++.++++.++...+...+.+|..|+||||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~  226 (277)
T d2fo1e1         147 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  226 (277)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHH
Confidence                     011222222222210      11234566789999999999999999999887766667889999999999


Q ss_pred             HHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHH
Q 042244          134 QAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLK  183 (368)
Q Consensus       134 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~  183 (368)
                      +|+++|+.+++++|++.+++.+. +|.+|+||||+|++.|+.++++.|++
T Consensus       227 ~A~~~g~~~iv~~Ll~~gadin~-~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         227 LAAQEGRIEVVMYLIQQGASVEA-VDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSC-CCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999886 99999999999999999999998875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=171.73  Aligned_cols=142  Identities=19%  Similarity=0.084  Sum_probs=133.1

Q ss_pred             cHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHH
Q 042244           53 MTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPV  132 (368)
Q Consensus        53 tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpL  132 (368)
                      +|||+||..|+        .++|+.|++++  .+++.+|.+|+||||+|+ .|+.+++++|++++.+. +.++.+|.+|+
T Consensus         3 ~~Lh~Aa~~g~--------~~~v~~Ll~~g--~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l   70 (156)
T d1ihba_           3 NELASAAARGD--------LEQLTSLLQNN--VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVI   70 (156)
T ss_dssp             HHHHHHHHHTC--------HHHHHHHTTSC--CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHCC--CCcCccCCcccccccccc-ccccccccccccccccc-ccccccCcccc
Confidence            89999999999        99999999998  778999999999999886 79999999999998775 88999999999


Q ss_pred             HHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCC
Q 042244          133 IQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       133 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~  207 (368)
                      +.++..++.+.++.+++.+.+... .|..|.+|+|.|++.++.++++.|+++++.+.+.+|++|+||+|+|++..
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          71 HDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcC
Confidence            999999999999999999888776 89999999999999999999999999998889999999999999998864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=8.8e-25  Score=203.11  Aligned_cols=185  Identities=16%  Similarity=0.027  Sum_probs=140.3

Q ss_pred             hhhccCChHHHHHHHhCCHHHHHH---HHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhh
Q 042244           11 DEYCARYWPLYRMIEKNDWRGVED---FVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTL   87 (368)
Q Consensus        11 ~~~~~g~t~Lh~A~~~G~~~~v~~---Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~   87 (368)
                      .++..|.||||.|+++|+.++++.   |++.+.+.  ...|.+|+||||+||+.||        .++|+.|++.+  ..+
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i--n~~~~~g~taL~~Aa~~G~--------~~~v~~Ll~~g--~~~  152 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV--KVIQAENYQAFRLAAENGH--------LHVLNRLCELA--PTE  152 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC--C--CHHHHHHHHHHHHTTC--------HHHHHHHHHSC--TTT
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc--cccCCCCCCHHHHHHHCCC--------HHHHHHHHHcC--CCc
Confidence            456678999999999999988765   55555443  4458899999999999999        99999999998  455


Q ss_pred             hchh--cCCCcHHHHHHHcCCHHHHHHHHhhCCCC--ccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCcc-------
Q 042244           88 EQRD--DIGYTALYQCAVKGNLRALKVLVKYNPDL--TNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDI-------  156 (368)
Q Consensus        88 ~~~d--~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-------  156 (368)
                      +..|  .+|+||||+|+..|+.+++++|++.++..  .+..+.+|.||+|.|+++|+.+++++|++.+++...       
T Consensus       153 ~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~  232 (346)
T d2ajaa1         153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE  232 (346)
T ss_dssp             HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTT
T ss_pred             cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHH
Confidence            5555  46999999999999999999999987653  234556778899999999999999999986532110       


Q ss_pred             -------------------------ccCCC----------------CchHHHHHHHhCchHHHHHHHHhCCc----cccc
Q 042244          157 -------------------------YSGND----------------GANMLSRLIDATLYDVALDLLKLYPT----IGRD  191 (368)
Q Consensus       157 -------------------------~~~~~----------------g~t~Lh~a~~~~~~~~~~~Ll~~~~~----~~~~  191 (368)
                                               ..+.+                +.++++.+...++.+++++|++.+..    ....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~  312 (346)
T d2ajaa1         233 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT  312 (346)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCS
T ss_pred             cCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhccccc
Confidence                                     01111                13567777778888999999987632    2234


Q ss_pred             CCCCCCcHHHHHhcCC
Q 042244          192 NIDSRRIVLNALAEKP  207 (368)
Q Consensus       192 ~~~~g~Tpl~l~~~~~  207 (368)
                      .+.+|+||||+|+++.
T Consensus       313 ~~~~g~T~LhlA~~~G  328 (346)
T d2ajaa1         313 IPGDANELLRLALRLG  328 (346)
T ss_dssp             STTCCCHHHHHHHHHT
T ss_pred             CCCCCCcHHHHHHHcC
Confidence            4567999999998864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.2e-23  Score=167.95  Aligned_cols=142  Identities=19%  Similarity=0.067  Sum_probs=129.0

Q ss_pred             cHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHH
Q 042244           53 MTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPV  132 (368)
Q Consensus        53 tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpL  132 (368)
                      ..||.||..|+        .++|+.|++.+ +.+++.+|..|+||||+|+ .|+.+++++|++++.+. +..+.+|.+|+
T Consensus         4 ~~L~~Aa~~g~--------~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l   72 (156)
T d1bd8a_           4 DRLSGAAARGD--------VQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHHHTC--------HHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHhC-CCCCCccCCCCCccccccc-ccccccccccccccccc-ccccccccccc
Confidence            45999999999        99999999987 6789999999999999987 58999999999998775 88899999999


Q ss_pred             HHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCCC
Q 042244          133 IQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPY  208 (368)
Q Consensus       133 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~~  208 (368)
                      +.++..++.++++++++++.+.+. +|++|+||||.|++.|+.+++++|+ .+ .+.+.+|.+|+||+|+|++...
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~~n~-~~~~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          73 HDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             cccccccccccccccccccccccc-ccCCCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHHHcCC
Confidence            999999999999999999988776 8999999999999999999998776 44 6788999999999999988643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.2e-22  Score=165.55  Aligned_cols=143  Identities=15%  Similarity=0.111  Sum_probs=129.8

Q ss_pred             CcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcH
Q 042244           52 SMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLP  131 (368)
Q Consensus        52 ~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tp  131 (368)
                      .||||.||+.|+        .++++.|++.+  +... .|..|+||||+|+..++.++++.++...... ...+..+.++
T Consensus         3 ~t~L~~Aa~~g~--------~~~v~~LL~~g--a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   70 (153)
T d1awcb_           3 GKKLLEAARAGQ--------DDEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTP   70 (153)
T ss_dssp             HHHHHHHHHHTC--------HHHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCH
T ss_pred             CHHHHHHHHCCC--------HHHHHHHHHcC--CCcc-cccCCCccccccccccccccccccccccccc-cccccccccc
Confidence            499999999999        99999999998  3343 6899999999999999999999999887654 5677788999


Q ss_pred             HHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHhcCCC
Q 042244          132 VIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALAEKPY  208 (368)
Q Consensus       132 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~~~~~  208 (368)
                      +|.++...+.+.++++++.+.+... +|.+|.||||.|+..|+.+++++|++.+ .+.+.+|++|.||+|+|+++..
T Consensus        71 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          71 LHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccceeeecccccCCcccc-ccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999988876 9999999999999999999999999886 8889999999999999998753

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.1e-22  Score=178.64  Aligned_cols=133  Identities=20%  Similarity=0.167  Sum_probs=116.1

Q ss_pred             CCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcC----CHHHHHHHHhhCCCCccccC
Q 042244           50 PGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKG----NLRALKVLVKYNPDLTNKRD  125 (368)
Q Consensus        50 ~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g----~~~~v~~Ll~~~~~~~~~~d  125 (368)
                      .|.||||+|+..|+        .++++.|+++. +..++.+|..|.++.+.+...+    ..++++.|++++.+. +.+|
T Consensus       147 ~g~t~L~~A~~~~~--------~~~~~~Ll~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~  216 (285)
T d1wdya_         147 GGATALMDAAEKGH--------VEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRG  216 (285)
T ss_dssp             CCCCHHHHHHHHTC--------HHHHHHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCC
T ss_pred             cCchHHHHHHHcCC--------HHHHHHHHhcc-CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccC
Confidence            57888888888888        99999999876 5778999999999888776544    357999999998775 8899


Q ss_pred             CCCCcHHHHHHhhCCHHHHHHHHhh-CCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCC
Q 042244          126 TLDSLPVIQAAYHGHKDTFQYLREV-THGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNID  194 (368)
Q Consensus       126 ~~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~  194 (368)
                      .+|+||||+|++.|+.+++++|++. +.+.+. +|.+|+||||+|++.|+.+++++|++.| ++++++|.
T Consensus       217 ~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~-~d~~G~TpL~~A~~~~~~eiv~~Ll~~G-Ad~n~~d~  284 (285)
T d1wdya_         217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEIND-TDSDGKTALLLAVELKLKKIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred             CCCCCccchhhhcCcHHHHHHHHHcCCCCCcC-CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcccC
Confidence            9999999999999999999999986 556665 9999999999999999999999999998 88888773

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-23  Score=163.88  Aligned_cols=121  Identities=19%  Similarity=0.114  Sum_probs=110.6

Q ss_pred             CCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCC
Q 042244           50 PGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDS  129 (368)
Q Consensus        50 ~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~  129 (368)
                      .+.++||+||..|+        .++++.|++++  .+++.+|..|.||+|.|+ .|+.+++++|++++.++ +.+|..|.
T Consensus         2 p~~~~L~~Aa~~G~--------~~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~   69 (125)
T d1bi7b_           2 PSADWLATAAARGR--------VEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATL   69 (125)
T ss_dssp             CSTTHHHHHHHHTC--------HHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTC
T ss_pred             CChhHHHHHHHCCC--------HHHHHHHHHcC--Cccccccccccccccccc-ccccccccccccccccc-cccccccc
Confidence            35789999999999        99999999998  778999999999999775 79999999999998776 77777765


Q ss_pred             -cHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHH
Q 042244          130 -LPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLK  183 (368)
Q Consensus       130 -tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~  183 (368)
                       ||||+|+++|+.+++++|++.+.+.+. +|.+|+||||+|++.|+.+++++|++
T Consensus        70 ~~~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          70 TRPVHDAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccc-ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence             799999999999999999999998886 99999999999999999999998874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-23  Score=163.82  Aligned_cols=121  Identities=21%  Similarity=0.165  Sum_probs=107.9

Q ss_pred             cCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCC
Q 042244           15 ARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIG   94 (368)
Q Consensus        15 ~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G   94 (368)
                      .+.++||.|++.|+.|+++.|++.+.+.  ...|.+|.||||.|+ .|+        .++++.|++.+  .+++.+|..|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~--n~~~~~g~t~l~~a~-~g~--------~~~v~~Ll~~g--a~~~~~~~~~   68 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP--NAPNSYGRRPIQVMM-MGS--------ARVAELLLLHG--AEPNCADPAT   68 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT--TCCCSSSCCTTTSSC-TTC--------HHHHHHHHTTT--CCCCCCCTTT
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc--ccccccccccccccc-ccc--------ccccccccccc--cccccccccc
Confidence            4568999999999999999999985543  345889999999775 799        99999999998  6788888887


Q ss_pred             C-cHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHh
Q 042244           95 Y-TALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLRE  149 (368)
Q Consensus        95 ~-tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~  149 (368)
                      . ||||+|++.|+.+++++|++++.+. +.+|.+|+||||+|+++|+.+++++|++
T Consensus        69 ~~~~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          69 LTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            6 6999999999999999999998765 8999999999999999999999999974

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=6.6e-23  Score=186.62  Aligned_cols=46  Identities=13%  Similarity=-0.088  Sum_probs=43.4

Q ss_pred             cCCCCchHHHHHHHhCchHHHHHHHHhCCcccccCCCCCCcHHHHHh
Q 042244          158 SGNDGANMLSRLIDATLYDVALDLLKLYPTIGRDNIDSRRIVLNALA  204 (368)
Q Consensus       158 ~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~Tpl~l~~  204 (368)
                      +|.+|+||||+|++.|+.+++++|++.+ ++++.+|++|+||+|+|+
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            7999999999999999999999999986 889999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=7.3e-24  Score=165.81  Aligned_cols=106  Identities=21%  Similarity=0.243  Sum_probs=83.6

Q ss_pred             CcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcH
Q 042244           52 SMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLP  131 (368)
Q Consensus        52 ~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tp  131 (368)
                      +|||++|++.|+        .++++.|++.+  .+++.+|.+|+||||+|+..|+.+++++|++++.++ +.+|.+|+||
T Consensus         3 ~tpL~~A~~~g~--------~~~v~~Ll~~g--~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tp   71 (118)
T d1myoa_           3 DKEFMWALKNGD--------LDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITP   71 (118)
T ss_dssp             HHHHHHHHHTTC--------HHHHHHHHTTT--CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCH
T ss_pred             ChHHHHHHHCCC--------HHHHHHHHHhh--hcccccccccccccccccccccccccccccccccee-eecccccccc
Confidence            478888888888        88888888877  667777888888888888888888888888877664 6777788888


Q ss_pred             HHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH
Q 042244          132 VIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL  169 (368)
Q Consensus       132 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a  169 (368)
                      ||+|+.+|+.+++++|++++.+.+. +|++|+||||+|
T Consensus        72 Lh~A~~~~~~~~v~~Ll~~Gad~~~-~d~~G~t~l~~a  108 (118)
T d1myoa_          72 LLSAVYEGHVSCVKLLLSKGADKTV-KGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHTTTCCHHHHHHHTTCCCSSS-SSSSTCCCCCTC
T ss_pred             hhhhhhcCchhhhhhhhccccccee-eCCCCCCHHHHH
Confidence            8888888888888888888777765 778888888776

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=1.6e-22  Score=182.22  Aligned_cols=150  Identities=19%  Similarity=0.131  Sum_probs=126.4

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCc-----
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDP-----   84 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p-----   84 (368)
                      +..+.+|.||||.|++.|+.|+++.|++.+.+.  ...+..+.+|||.|+..|+        .++++.|++.+..     
T Consensus        67 n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~--~~~~~~~~~~L~~a~~~~~--------~~~~~~l~~~~~~~~~~~  136 (291)
T d1s70b_          67 NYANVDGLTALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAASCGY--------LDIAEYLISQGAHVGAVN  136 (291)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTC--------HHHHHHHHHTTCCTTCCC
T ss_pred             CccCCCCCcHHHHHHhcCCceeeeeeccccccc--ccccccccccccccccccc--------cchhhcccccCccccccc
Confidence            345778999999999999999999999997664  3447789999999999999        5555555443210     


Q ss_pred             -----------------------------------------------------hhhhchhcCCCcHHHHHHHcCCHHHHH
Q 042244           85 -----------------------------------------------------QTLEQRDDIGYTALYQCAVKGNLRALK  111 (368)
Q Consensus        85 -----------------------------------------------------~~~~~~d~~G~tpLh~A~~~g~~~~v~  111 (368)
                                                                           ......+..|.||||.|+..|+.++++
T Consensus       137 ~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  216 (291)
T d1s70b_         137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK  216 (291)
T ss_dssp             TTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhc
Confidence                                                                 012335677999999999999999999


Q ss_pred             HHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHH
Q 042244          112 VLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLID  171 (368)
Q Consensus       112 ~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~  171 (368)
                      .|++.+.++ +.+|.+|+||||+|+.+|+.+++++|++++++.+. +|.+|+||||+|++
T Consensus       217 ~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~-~d~~G~TaL~~A~e  274 (291)
T d1s70b_         217 LLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA-VNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCTTTSCCS
T ss_pred             ccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHH
Confidence            999998765 88999999999999999999999999999999886 89999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-22  Score=159.45  Aligned_cols=121  Identities=18%  Similarity=0.186  Sum_probs=109.2

Q ss_pred             cHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHH
Q 042244           53 MTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPV  132 (368)
Q Consensus        53 tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpL  132 (368)
                      ++||.||..|+        .++++.|++++  .+++.+|.+|+||||+|+..|+.+++++|++.+.+. +.+|.+|+|||
T Consensus         3 ~lL~~A~~~G~--------~~~v~~Ll~~g--~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpL   71 (130)
T d1ycsb1           3 ALLLDSSLEGE--------FDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPL   71 (130)
T ss_dssp             HHHHHHHHHTC--------HHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHH
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHcC--CCcccccccccccccccccccccccccccccccccc-ccccccCcccc
Confidence            68999999999        99999999998  778999999999999999999999999999998765 88999999999


Q ss_pred             HHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHH--HHhCchHHHHHHHHh
Q 042244          133 IQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRL--IDATLYDVALDLLKL  184 (368)
Q Consensus       133 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a--~~~~~~~~~~~Ll~~  184 (368)
                      |+|+.+|+.+++++|++++++.+...+.+|+|+++++  .+.|+.+++++|+..
T Consensus        72 h~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          72 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999999999887763445688888775  567889999999865

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.7e-23  Score=162.54  Aligned_cols=107  Identities=17%  Similarity=0.176  Sum_probs=98.7

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCc
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYT   96 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~t   96 (368)
                      .|||+.|++.|+.++++.|++.+.+.  ...|.+|+||||+|+..|+        .++++.|++.+  .+++.+|.+|+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~--n~~~~~g~t~lh~A~~~~~--------~~~~~~ll~~g--~din~~d~~g~t   70 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQ--------LEILEFLLLKG--ADINAPDKHHIT   70 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC--CCCSSSSCCTTHHHHHHST--------TTHHHHHHHSS--CTTTCCSSSCSC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc--ccccccccccccccccccc--------ccccccccccc--ceeeeccccccc
Confidence            48999999999999999999986654  4458899999999999999        99999999998  778999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHH
Q 042244           97 ALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAA  136 (368)
Q Consensus        97 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa  136 (368)
                      |||+|+..|+.+++++|++++.++ +.+|.+|+||||+|.
T Consensus        71 pLh~A~~~~~~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          71 PLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTTCCHHHHHHHTTCCCS-SSSSSSTCCCCCTCS
T ss_pred             chhhhhhcCchhhhhhhhcccccc-eeeCCCCCCHHHHHh
Confidence            999999999999999999999775 899999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=7.2e-23  Score=190.04  Aligned_cols=174  Identities=13%  Similarity=0.071  Sum_probs=132.2

Q ss_pred             CCCCccchhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcC
Q 042244            3 INSDDQEEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKV   82 (368)
Q Consensus         3 i~~~~~~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~   82 (368)
                      +..+-..+..+..|+||||.|++.|+.++|+.|++.+++......+.+|+||||+||..||        .++|+.|++.+
T Consensus       113 ~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~--------~~iv~~Ll~~~  184 (346)
T d2ajaa1         113 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH--------LHVLNRLCELA  184 (346)
T ss_dssp             --CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTC--------HHHHHHHHHSC
T ss_pred             HhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhh--------HHHHHHHHHcC
Confidence            4444445556778999999999999999999999998775422234579999999999999        99999999987


Q ss_pred             Cc-hhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCC--------------------------------ccccCCC--
Q 042244           83 DP-QTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDL--------------------------------TNKRDTL--  127 (368)
Q Consensus        83 ~p-~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~--------------------------------~~~~d~~--  127 (368)
                      .+ ...+..+.+|.||+|.|+..|+.+++++|++.+.+.                                ....+.+  
T Consensus       185 ~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~  264 (346)
T d2ajaa1         185 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV  264 (346)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSC
T ss_pred             CcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhccccc
Confidence            21 234556667888899999999999999998753110                                0011111  


Q ss_pred             --------------CCcHHHHHHhhCCHHHHHHHHhhCCCCcc----ccCCCCchHHHHHHHhCchHHHHHHHHh
Q 042244          128 --------------DSLPVIQAAYHGHKDTFQYLREVTHGVDI----YSGNDGANMLSRLIDATLYDVALDLLKL  184 (368)
Q Consensus       128 --------------G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~----~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~  184 (368)
                                    +.++++.|+..++.+++++|++.+.....    ..+.+|+||||+|++.|+.++++.|++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence                          23678888889999999999987664332    2456899999999999999999999864

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.6e-22  Score=157.65  Aligned_cols=120  Identities=17%  Similarity=0.110  Sum_probs=106.0

Q ss_pred             hHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcH
Q 042244           18 WPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTA   97 (368)
Q Consensus        18 t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tp   97 (368)
                      ++|+.|++.|+.++++.|++.+.+.  ...|.+|+||||+||..|+        .++++.|++.+  .+++.+|.+|+||
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~--n~~d~~g~t~Lh~A~~~~~--------~~~~~~ll~~g--~~~~~~d~~g~tp   70 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGH--------TEIVKFLVQFG--VNVNAADSDGWTP   70 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC--CCCCTTSCCHHHHHHHHTC--------HHHHHHHHHHT--CCTTCCCTTCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc--ccccccccccccccccccc--------ccccccccccc--cccccccccCccc
Confidence            6799999999999999999986654  3458899999999999999        99999999998  7789999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCccccC-CCCCcHHHHH--HhhCCHHHHHHHHhh
Q 042244           98 LYQCAVKGNLRALKVLVKYNPDLTNKRD-TLDSLPVIQA--AYHGHKDTFQYLREV  150 (368)
Q Consensus        98 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~tpLh~A--a~~g~~~~v~~Ll~~  150 (368)
                      ||+|+..|+.+++++|++++.++ +..+ .+|+||++++  +++|+.+++++|++.
T Consensus        71 Lh~A~~~g~~~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          71 LHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999999999999998776 4444 4688887765  678899999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.5e-21  Score=159.56  Aligned_cols=130  Identities=18%  Similarity=0.241  Sum_probs=110.3

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHcCCccc----ccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhc
Q 042244           17 YWPLYRMIEKNDWRGVEDFVTNDPDAL----TAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDD   92 (368)
Q Consensus        17 ~t~Lh~A~~~G~~~~v~~Ll~~~p~~~----~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~   92 (368)
                      ...|+.|++.++.+.+++++..+.+..    ....+..|+||||+|++.++     .++.++++.|++.+  .+++.+|.
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~~~iv~~Ll~~g--adin~~d~   79 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD-----RTSLHIVDFLVQNS--GNLDKQTG   79 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC-----TTTHHHHHHHHHHC--SCTTCCCT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcC-----CCCHHHHHHHHHcC--CChhhhhh
Confidence            356789999999999999998754322    12336779999999998643     12289999999998  77899999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCC
Q 042244           93 IGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGV  154 (368)
Q Consensus        93 ~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~  154 (368)
                      +|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+++|+.+++++|++.+...
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             hhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999999998876 889999999999999999999999999876543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.6e-21  Score=163.05  Aligned_cols=165  Identities=12%  Similarity=0.007  Sum_probs=133.4

Q ss_pred             hhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCccccc---------------------
Q 042244           10 EDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVES---------------------   68 (368)
Q Consensus        10 ~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~---------------------   68 (368)
                      +..+..|+||||.|+..|+.++++.|++.+.+.  ...+..|.++++.|...++.++++                     
T Consensus        34 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (228)
T d1k1aa_          34 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP--MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL  111 (228)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSC
T ss_pred             CccCCCCCccceehhcccccccccccccccccc--cccccccccccccccccccccchhhhhhccccccccccccccccc
Confidence            345678999999999999999999999986544  334778899999999999944430                     


Q ss_pred             --------CChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCC
Q 042244           69 --------DDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGH  140 (368)
Q Consensus        69 --------~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~  140 (368)
                              .......+.|.... +......+..|.+|+|.|+..+..++++.+++.+... +.+|.+|+||||+|+.+|+
T Consensus       112 ~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~  189 (228)
T d1k1aa_         112 TALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGL  189 (228)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTC
T ss_pred             cccccccccccchhhhhhhccc-cccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc-ccccccCcchHHHHHHcCC
Confidence                    01123333333333 2334456667999999999999999999999987654 7899999999999999999


Q ss_pred             HHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHH
Q 042244          141 KDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVAL  179 (368)
Q Consensus       141 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~  179 (368)
                      .+++++|++++++.+. +|.+|+||||+|++.|+.++++
T Consensus       190 ~~~v~~Ll~~Gad~n~-~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         190 LPLVRTLVRSGADSSL-KNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHHHTTCCTTC-CCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCC-CCCCCCCHHHHHHhCCCccccC
Confidence            9999999999998886 9999999999999999988774

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=6.4e-20  Score=149.78  Aligned_cols=126  Identities=13%  Similarity=0.048  Sum_probs=106.7

Q ss_pred             HHHHHHHcCCcccccCChHHHHHHHHhcCC----chhhhchhcCCCcHHHHHHHc---CCHHHHHHHHhhCCCCccccCC
Q 042244           54 TIFHAIVELWVDVESDDATCLLDKLASKVD----PQTLEQRDDIGYTALYQCAVK---GNLRALKVLVKYNPDLTNKRDT  126 (368)
Q Consensus        54 pLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~----p~~~~~~d~~G~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~  126 (368)
                      .|+.|++.++        .+.+..++..+.    +......+..|+||||+|++.   |+.+++++|++.+.++ +.+|.
T Consensus         9 ~L~~Av~~~d--------l~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~   79 (154)
T d1dcqa1           9 SLCEAVKTRD--------IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTG   79 (154)
T ss_dssp             HHHHHHHTTC--------HHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCT
T ss_pred             HHHHHHHhCC--------HHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhh
Confidence            4557788998        888888887761    111223467899999999974   6789999999999775 89999


Q ss_pred             CCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHHhCCccc
Q 042244          127 LDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLKLYPTIG  189 (368)
Q Consensus       127 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~~~~~~~  189 (368)
                      +|+||||+|+..|+.+++++|++++++... +|.+|+||||+|++.|+.++++.|++.+....
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             hhccccccccccccccccccccccCccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            999999999999999999999999998886 99999999999999999999999998764333

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=1.4e-19  Score=154.62  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=141.5

Q ss_pred             chhhhccCChHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhh
Q 042244            9 EEDEYCARYWPLYRMIEKNDWRGVEDFVTNDPDALTAKTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLE   88 (368)
Q Consensus         9 ~~~~~~~g~t~Lh~A~~~G~~~~v~~Ll~~~p~~~~~~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~   88 (368)
                      ....+..+.++++.++..++.+............. ......|.++.+.+.....        ....+.|.+.+  ..++
T Consensus        49 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~L~~~~--~~~~  117 (209)
T d1ot8a_          49 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNL-NARMHDGTTPLILAARLAI--------EGMVEDLITAD--ADIN  117 (209)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTCCCHHHHHHHTTC--------TTHHHHHHHTT--CCTT
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--------hhhhhhhhhhc--cccc
Confidence            34456778999999999999998888777655544 4557788999999999999        88888888887  6788


Q ss_pred             chhcCCCcHHHHHHHcCCHHHHHHHHhhCCCCccccCCCCCcHHHHHHhhCCHHHHHHHHhhCCCCccccCCCCchHHHH
Q 042244           89 QRDDIGYTALYQCAVKGNLRALKVLVKYNPDLTNKRDTLDSLPVIQAAYHGHKDTFQYLREVTHGVDIYSGNDGANMLSR  168 (368)
Q Consensus        89 ~~d~~G~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  168 (368)
                      .+|..|+||||.++..|..++++.+++.+.+. +.+|.+|.||||.|+.+|+.+++++|++.+++.+. +|.+|+||||+
T Consensus       118 ~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~-~d~~g~Tpl~~  195 (209)
T d1ot8a_         118 AADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFANREI-TDHMDRLPRDV  195 (209)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHH
T ss_pred             ccCCCCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccHHHHHHHHHHCCCCCCC-cCCCCCCHHHH
Confidence            89999999999999999999999999998765 88999999999999999999999999999999886 99999999999


Q ss_pred             HHHhCchHHHHHH
Q 042244          169 LIDATLYDVALDL  181 (368)
Q Consensus       169 a~~~~~~~~~~~L  181 (368)
                      |++.|+.+++++|
T Consensus       196 A~~~~~~~iv~lL  208 (209)
T d1ot8a_         196 ASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHhhc
Confidence            9999999999864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=9.2e-18  Score=152.11  Aligned_cols=152  Identities=10%  Similarity=0.005  Sum_probs=95.7

Q ss_pred             ccCCCCCcHHHHHHHcCCcccccCChHHHHHHHHhcCCchhhhchhcCCCcHHHHHHHcCCH---HHHHHHHhhCCCCcc
Q 042244           46 KTIAPGSMTIFHAIVELWVDVESDDATCLLDKLASKVDPQTLEQRDDIGYTALYQCAVKGNL---RALKVLVKYNPDLTN  122 (368)
Q Consensus        46 ~~~~~g~tpLh~A~~~g~~~~~~~~~~~~v~~Ll~~~~p~~~~~~d~~G~tpLh~A~~~g~~---~~v~~Ll~~~~~~~~  122 (368)
                      ..|.+|+||||+||..|+        .++|+.|++++  ++++.+|..|+||||.|+..++.   +.++.+++.......
T Consensus       102 ~~D~~G~T~LH~Aa~~g~--------~~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~  171 (301)
T d1sw6a_         102 PVDEHGNTPLHWLTSIAN--------LELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  171 (301)
T ss_dssp             CCSTTCCCHHHHHHHTTC--------HHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             CcCCCCCCHHHHHHHcCC--------HHHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhh
Confidence            348899999999999999        99999999998  88999999999999999987752   222233333223346


Q ss_pred             ccCCCCCcHHHHHHhhCCH----H--------HHHHHHhhCCCCccccCCCCchHHHHHHHhCchHHHHHHHH--hCCcc
Q 042244          123 KRDTLDSLPVIQAAYHGHK----D--------TFQYLREVTHGVDIYSGNDGANMLSRLIDATLYDVALDLLK--LYPTI  188 (368)
Q Consensus       123 ~~d~~G~tpLh~Aa~~g~~----~--------~v~~Ll~~~~~~~~~~~~~g~t~Lh~a~~~~~~~~~~~Ll~--~~~~~  188 (368)
                      .+|..|+||||.++..+..    .        +++++.+.+..........+.++++.+........+..+..  .....
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            7899999999998875542    2        33455555544433355566666666555444433332111  01133


Q ss_pred             cccCCCCCCcHHHHHhcCC
Q 042244          189 GRDNIDSRRIVLNALAEKP  207 (368)
Q Consensus       189 ~~~~~~~g~Tpl~l~~~~~  207 (368)
                      .+.+|.+|+||||+|+++.
T Consensus       252 in~~D~~G~TpLh~A~~~g  270 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLG  270 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHC
T ss_pred             ccCCCCCCCCHHHHHHHcC
Confidence            6889999999999998864