Citrus Sinensis ID: 042279

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEcHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHccc
Coil and Loop (DISEMBL)
MAIRFLRIVNSKQALRRALmvpeastvpkghfaVYVGetersrfvvpvsypkhpsfqkllspaeeefgfhhpmggltipcseeLFMDLTCRL
Flexible Loop (DISEMBL)
mairflrivnskqALRRAlmvpeastvpkgHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL
Low Complexity Region (SEG)
MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL
Disordered region (IsUnstruct)
***RFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLT***
Disordered Region (DISOPRED)
*A****************************HFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL
Disordered Region (DISEMBL)
MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL
Disordered Region (DISPRO)
*AIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
P33082	82	Auxin-induced protein X15	no	no	0.75	0.841	0.657	3e-20
P33083	90	Auxin-induced protein 6B	no	no	0.75	0.766	0.657	3e-19
P33081	82	Auxin-induced protein 15A	no	no	0.717	0.804	0.656	3e-19
P33079	93	Auxin-induced protein 10A	no	no	0.706	0.698	0.666	4e-19
P33080	92	Auxin-induced protein X10	no	no	0.706	0.706	0.621	5e-18
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.706	0.706	0.651	5e-18

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 23 EASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSE 82
           A   PKG+ AVYVGE  + RFV+PVSY   PSFQ LL+ AEEEFG+ HPMGGLTIPCSE
Sbjct: 13 NAVDAPKGYLAVYVGEKMK-RFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSE 71

Query: 83 ELFMDLTCRL 92
          E+F  +TC L
Sbjct: 72 EVFQRITCCL 81

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 23 EASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSE 82
          +A  V KG+ AVYVGE  R RFV+PVSY   PSFQ LLS AEEEFG+HHP GGLTIPCSE
Sbjct: 21 KAVDVEKGYLAVYVGEKMR-RFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSE 79

Query: 83 ELFMDLTCRL 92
          ++F  +T  L
Sbjct: 80 DVFQHITSFL 89

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 23 EASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSE 82
          +A+  PKG+ AVYVGE  + RFV+PVSY   PSFQ LLS AEEEFG+ HPMGGLTIPCSE
Sbjct: 13 KAADAPKGYLAVYVGEKLK-RFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSE 71

Query: 83 ELFMDLT 89
          ++F  +T
Sbjct: 72 DVFQCIT 78

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 52/66 (78%), Gaps = 1/66 (1%)

Query: 27 VPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFM 86
          VPKG+ AVYVG+  R RF +PVSY   PSFQ+LLS AEEEFG+ HPMGGLTIPC EE F+
Sbjct: 26 VPKGYAAVYVGDKMR-RFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFL 84

Query: 87 DLTCRL 92
          ++T  L
Sbjct: 85 NVTAHL 90

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 27 VPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFM 86
          VPKG+  VYVG+  R RF++PVSY   PSFQ LL+ AEEEFG+ HPMGGLTIPC E+ F+
Sbjct: 25 VPKGYLVVYVGDKMR-RFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFL 83

Query: 87 DLTCRL 92
           +T  L
Sbjct: 84 TVTSHL 89

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 27 VPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFM 86
           PKG+ AVYVGE  + RFV+PVS+   P FQ LLS AEEEFG+ HPMGGLTIPCSE+LF 
Sbjct: 25 APKGYLAVYVGENMK-RFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQ 83

Query: 87 DLTCRL 92
           +T  L
Sbjct: 84 HITSCL 89

Vigna radiata var. radiata (taxid: 3916)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
297744698	107	unnamed protein product [Vitis vinifera]	1.0	0.859	0.706	7e-32
359474902	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.968	0.717	8e-32
225427862	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.968	0.706	2e-31
225427834	95	PREDICTED: auxin-induced protein X15 [Vi	1.0	0.968	0.695	5e-31
297744700	136	unnamed protein product [Vitis vinifera]	0.978	0.661	0.7	7e-31
359474898	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.968	0.695	2e-30
225427846	95	PREDICTED: auxin-induced protein 10A5 [V	1.0	0.968	0.684	2e-30
359475065	95	PREDICTED: auxin-induced protein X15 [Vi	1.0	0.968	0.684	5e-30
225427854	95	PREDICTED: auxin-induced protein 10A5 [V	1.0	0.968	0.684	7e-30
225427840	95	PREDICTED: auxin-induced protein 10A5 [V	1.0	0.968	0.684	2e-29

>gi|297744698|emb|CBI37960.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 76/92 (82%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAIRF RI+ +KQ LRR L  PE++ VPKGH  VYVGETE+ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETEKKRFVIPISYLKHPSFQNLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          S AEEEFGF HP+GGLTIPC EE F+DLTC++
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCKI 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474902|ref|XP_002276058.2| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|147776039|emb|CAN65270.1| hypothetical protein VITISV_040137 [Vitis vinifera]

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 75/92 (81%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAIRF RI+ +KQ LRR L  PE++ VPKGH  VYVGETE+ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETEKKRFVIPISYLKHPSFQNLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          S AEEEFGF HP+GGLTIPC EE F+DLTC L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427862|ref|XP_002272231.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|359474896|ref|XP_003631552.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|147804680|emb|CAN62608.1| hypothetical protein VITISV_016869 [Vitis vinifera]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 75/92 (81%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAIRF RI+ +KQ LRR L  PE++ VPKGH  VYVGET++ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          S AEEEFGF HP+GGLTIPC EE F+DLTC L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427834|ref|XP_002271501.1| PREDICTED: auxin-induced protein X15 [Vitis vinifera]

 Score =  137 bits (346), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 74/92 (80%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAIRF RI+ +KQ LRR L  PE++ VPKGH  VYVGE ++ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGEAQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          S AEEEFGF HP+GGLTIPC EE F+DLTC L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744700|emb|CBI37962.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 73/90 (81%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAIRF RI+ +KQ LRR L  PE++ VPKGH  VYVGE ++ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGEAQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTC 90
          S AEEEFGF HP+GGLTIPC EE F+DLTC
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTC 90

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474898|ref|XP_003631553.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 74/92 (80%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAIRF RI+ +KQ LRR L   E++ VPKGH  VYVGET++ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSLESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          S AEEEFGF HP+GGLTIPC EE F+DLTC L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427846|ref|XP_002271793.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera] gi|147776034|emb|CAN65265.1| hypothetical protein VITISV_040132 [Vitis vinifera]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 76/92 (82%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAIRF RI+ +KQ LRR L  PE+++VPKG+  VYVGET++ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTSVPKGYVPVYVGETQKKRFVIPISYLKHPSFQSLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          S AEEEFGF HP+GGLTIPC EE F++LTC L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFINLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475065|ref|XP_003631579.1| PREDICTED: auxin-induced protein X15 [Vitis vinifera]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 73/92 (79%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAI F RI+ +KQ LRR L   E++ VPKGH  VYVGET++ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIHFQRIIPAKQILRRILPSAESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          S A EEFGF HP+GGLTIPC EE F+DLTCRL
Sbjct: 61 SQAAEEFGFDHPLGGLTIPCREEAFIDLTCRL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427854|ref|XP_002276250.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera] gi|147804682|emb|CAN62610.1| hypothetical protein VITISV_016871 [Vitis vinifera]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 74/92 (80%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAIRF RI+ +KQ LRR L  PE + VPKG+  VYVGET++ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPEPTNVPKGYVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          S AEEEFGF HP+GGLTIPC EE F++LTC L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFINLTCGL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427840|ref|XP_002271620.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera] gi|147776038|emb|CAN65269.1| hypothetical protein VITISV_040136 [Vitis vinifera]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 72/92 (78%)

Query: 1  MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLL 60
          MAIRF RI+ +KQ LRR L  PE++ VPKGH  VYVGETE+ RFV+P+SY KHPSFQ LL
Sbjct: 1  MAIRFQRIIPTKQILRRILPSPESTNVPKGHVPVYVGETEKKRFVIPISYLKHPSFQNLL 60

Query: 61 SPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          S AEEEFGF HP+G LTIPC EE F+DL   L
Sbjct: 61 SQAEEEFGFDHPLGALTIPCREEAFIDLAFSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.989	0.919	0.618	9.7e-25
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	1.0	0.938	0.585	2.6e-24
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.891	0.872	0.633	1.8e-23
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.945	0.988	0.540	3e-21
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	0.956	0.846	0.556	3e-21
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.923	0.934	0.545	3.9e-21
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.934	0.955	0.550	3.9e-21
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.673	0.590	0.707	8e-21
TAIR|locus:2161538	90	SAUR19 "AT5G18010" [Arabidopsi	0.934	0.955	0.539	8e-21
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.902	0.922	0.529	2.7e-20

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 60/97 (61%), Positives = 71/97 (73%)

Query:     1 MAIRFLRIV-NSKQALRRALMVPEAST-----VPKGHFAVYVGETERSRFVVPVSYPKHP 54
             MAIR  R++ +SKQ LR+A ++  +S+     VPKG+ AVYVGE    RFVVPVSY   P
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    55 SFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCR 91
             SFQ LL  AEEEFGF HPMGGLTIPCSEE+F+DL  R
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 55/94 (58%), Positives = 69/94 (73%)

Query:     1 MAIRFLRIVNSKQALRRALMVPEAST-VPKGHFAVYVGET-ERSRFVVPVSYPKHPSFQK 58
             MAIR  R++ S + L ++L     +  +PKGH AVYVGE  ++ RFVVPV+Y  HP FQK
Sbjct:     1 MAIRISRVLQSSKQLLKSLSHSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQK 60

Query:    59 LLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
             LL  AEEEFGF HPMGGLTIPC+E++F+DL  RL
Sbjct:    61 LLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 57/90 (63%), Positives = 66/90 (73%)

Query:     1 MAIRFLRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERS--RFVVPVSYPKHPSFQK 58
             MAIR  R++NSKQ+ +      + S VPKGH AVYVGE   S  RFVVP+SY  HPSFQ 
Sbjct:     1 MAIRLSRVINSKQSQK------QQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQG 54

Query:    59 LLSPAEEEFGFHHPMGGLTIPCSEELFMDL 88
             LLS AEEEFGF+HP+GGLTIPC EE F+ L
Sbjct:    55 LLSRAEEEFGFNHPIGGLTIPCREETFVGL 84

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 47/87 (54%), Positives = 62/87 (71%)

Query:     6 LRIVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEE 65
             + +V S    ++ L    AS  PKG  AVYVGE+++ R++VP+SY   PSFQ LLS +EE
Sbjct:     1 MALVRSLLGAKKILSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEE 60

Query:    66 EFGFHHPMGGLTIPCSEELFMDLTCRL 92
             EFGF HPMGGLTIPC E+ F+++T RL
Sbjct:    61 EFGFDHPMGGLTIPCPEDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 54/97 (55%), Positives = 65/97 (67%)

Query:     1 MAIRFLRIVNSKQALRRALMVPEAS--------TVPKGHFAVYVGET-ERSRFVVPVSYP 51
             M I+ + +  +KQ L+R+L    AS         VPKGH AVYVGET  R RFV+P+SY 
Sbjct:     1 MGIQLIGLSQAKQKLQRSLSARIASLLATSGTNNVPKGHVAVYVGETYHRKRFVIPISYL 60

Query:    52 KHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDL 88
              HP FQ LL+ AEEEFGF HPMGGLTIPC+E+ F  L
Sbjct:    61 NHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYFTAL 97

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 48/88 (54%), Positives = 65/88 (73%)

Query:     5 FLR-IVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPA 63
             F+R ++ +K+ L R+     AS  PKG  AVYVGE+++ R++VP+SY   PSFQ LLS +
Sbjct:     3 FVRSLLGAKKILSRSTTA--ASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKS 60

Query:    64 EEEFGFHHPMGGLTIPCSEELFMDLTCR 91
             EEEFGF HPMGGLTIPC E+ F+++T R
Sbjct:    61 EEEFGFDHPMGGLTIPCPEDTFINVTSR 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 49/89 (55%), Positives = 65/89 (73%)

Query:     5 FLR-IVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPA 63
             F+R ++ +K+ L R+      S  PKG  AVYVGE+++ R++VPVSY   PSFQ LLS +
Sbjct:     3 FVRSLLGAKKILSRS--TGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKS 60

Query:    64 EEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
             EEEFGF HPMGGLTIPC E+ F+++T RL
Sbjct:    61 EEEFGFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 46/65 (70%), Positives = 54/65 (83%)

Query:    27 VPKGHFAVYVGET---ERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEE 83
             VPKGH AVYVGE    E+ RFVVP+S+  HPSF++ LS AEEEFGF+HPMGGLTIPC EE
Sbjct:    35 VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREE 94

Query:    84 LFMDL 88
             +F+DL
Sbjct:    95 VFLDL 99

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161538 SAUR19 "AT5G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/89 (53%), Positives = 65/89 (73%)

Query:     5 FLR-IVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPA 63
             F+R ++ +K+ L R+      S  PKG  AVYVGE+++ R++VP+SY   PSFQ LLS +
Sbjct:     3 FVRSLLGAKKILSRSTAA--GSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKS 60

Query:    64 EEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
             EEEFGF HPMGGLTIPC E+ F+++T RL
Sbjct:    61 EEEFGFAHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query:     8 IVNSKQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEF 67
             ++ +K+ L R+      S  PKG  AVYVGE+++ R++VP+SY   PSFQ LLS +E+EF
Sbjct:     7 LLGAKKILSRSTAA--VSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEF 64

Query:    68 GFHHPMGGLTIPCSEELFMDLTCRL 92
             GF HPMGGLTIPC E+ F+++T RL
Sbjct:    65 GFDHPMGGLTIPCHEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	3e-32
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	7e-28
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-27
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	3e-23

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  107 bits (269), Expect = 3e-32
 Identities = 48/100 (48%), Positives = 58/100 (58%), Gaps = 10/100 (10%)

Query: 1  MAIRFLRIVNSKQALRRA--------LMVPEASTVPKGHFAVYVGETERSRFVVPVSYPK 52
          MA R  +  ++K+ +  A             ++ VPKGHFAVYVGE E  RFVVP+SY  
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGE-ETRRFVVPISYLN 59

Query: 53 HPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCRL 92
          HP FQ+LL  AEEEFGF    GGLTIPC   +F  L   L
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 96.7 bits (240), Expect = 7e-28
 Identities = 46/65 (70%), Positives = 54/65 (83%), Gaps = 3/65 (4%)

Query: 27 VPKGHFAVYVGE---TERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEE 83
          VPKGH AVYVGE    E+ RFVVP+S+  HPSF++ LS AEEEFGF+HPMGGLTIPC EE
Sbjct: 35 VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREE 94

Query: 84 LFMDL 88
          +F+DL
Sbjct: 95 VFLDL 99

Length = 105

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 95.6 bits (238), Expect = 2e-27
 Identities = 42/66 (63%), Positives = 48/66 (72%), Gaps = 2/66 (3%)

Query: 27  VPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFM 86
           VPKGHF VYVGE  RSR++VP+S+  HP FQ LL  AEEEFGF H M GLTIPC E +F 
Sbjct: 40  VPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDM-GLTIPCEEVVFR 97

Query: 87  DLTCRL 92
            LT  +
Sbjct: 98  SLTSMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 85.2 bits (210), Expect = 3e-23
 Identities = 43/63 (68%), Positives = 49/63 (77%), Gaps = 1/63 (1%)

Query: 27  VPKGHFAVYVGET-ERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELF 85
           VPKGH AVYVGE  E+ RFVVP+SY  HP F++ L+ AEEE GFHH MGGLTIPC EE F
Sbjct: 39  VPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESF 98

Query: 86  MDL 88
           + L
Sbjct: 99  LHL 101

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	84.45
PRK02899	197	adaptor protein; Provisional	82.14

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=4.9e-41  Score=229.05  Aligned_cols=90  Identities=53%  Similarity=0.872  Sum_probs=82.5

Q ss_pred             Ccccchh----hHhHHHHHHhhhcCCCc---------cCCCCceEEEeecCCCceEEEEecCCCCchhHHHhhhhhHHhc
Q 042279            1 MAIRFLR----IVNSKQALRRALMVPEA---------STVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEF   67 (92)
Q Consensus         1 m~~~~~~----~~~~k~~l~r~~~~~~~---------~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEf   67 (92)
                      |||+..+    ++++||+|+||.|.++.         .+|||||||||||+ +++||+||++|||||.|++||++|||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            7887554    56899999999998643         47899999999998 8999999999999999999999999999


Q ss_pred             CCccCCCceeeeCCHHHHHHHHhcC
Q 042279           68 GFHHPMGGLTIPCSEELFMDLTCRL   92 (92)
Q Consensus        68 G~~~~~G~L~IPC~~~~F~~vl~~L   92 (92)
                      ||+|+ |+|+|||+++.|++++|+|
T Consensus        80 Gf~~~-G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         80 GFDHD-MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCC-CcEEEeCCHHHHHHHHHHh
Confidence            99998 8999999999999999986

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=6e-40  Score=223.87  Aligned_cols=90  Identities=58%  Similarity=1.021  Sum_probs=81.3

Q ss_pred             CcccchhhHhH-HHHHHhhhcCCC--------ccCCCCceEEEeecCC---CceEEEEecCCCCchhHHHhhhhhHHhcC
Q 042279            1 MAIRFLRIVNS-KQALRRALMVPE--------ASTVPKGHFAVYVGET---ERSRFVVPVSYPKHPSFQKLLSPAEEEFG   68 (92)
Q Consensus         1 m~~~~~~~~~~-k~~l~r~~~~~~--------~~~vpkG~~aVyVG~~---~~~RfvVp~~~L~hP~F~~LL~~aeeEfG   68 (92)
                      ||+++++|... ||+|+|++ .++        ..+|||||||||||++   +++||+||++|||||.|++||++||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfG   79 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNS-LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG   79 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHh-hcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence            99999999955 99999988 332        2589999999999972   58999999999999999999999999999


Q ss_pred             CccCCCceeeeCCHHHHHHHHhc
Q 042279           69 FHHPMGGLTIPCSEELFMDLTCR   91 (92)
Q Consensus        69 ~~~~~G~L~IPC~~~~F~~vl~~   91 (92)
                      |+|++|+|+|||+++.|++++++
T Consensus        80 f~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         80 FNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCCEEeeCCHHHHHHHHHh
Confidence            99966999999999999999874

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=1.2e-36  Score=205.17  Aligned_cols=90  Identities=58%  Similarity=0.869  Sum_probs=76.6

Q ss_pred             CcccchhhHhHHHHHHhhhcCC------C---ccCCCCceEEEeecCCCceEEEEecCCCCchhHHHhhhhhHHhcCCcc
Q 042279            1 MAIRFLRIVNSKQALRRALMVP------E---ASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHH   71 (92)
Q Consensus         1 m~~~~~~~~~~k~~l~r~~~~~------~---~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~   71 (92)
                      |.-++.++..+++...++.+..      +   ..++|+||+|||||+ +++||+||++|||||.|++||++|||||||+|
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~   79 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQ   79 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence            6666766666665555444321      1   277899999999998 99999999999999999999999999999999


Q ss_pred             CCCceeeeCCHHHHHHHHhcC
Q 042279           72 PMGGLTIPCSEELFMDLTCRL   92 (92)
Q Consensus        72 ~~G~L~IPC~~~~F~~vl~~L   92 (92)
                      + |+|+|||+++.|++++|+|
T Consensus        80 ~-G~l~iPC~~~~Fe~~l~~l   99 (100)
T PF02519_consen   80 D-GPLTIPCDVVLFEHLLWLL   99 (100)
T ss_pred             C-CcEEeeCCHHHHHHHHHHh
Confidence            7 9999999999999999986

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=207.70  Aligned_cols=91  Identities=53%  Similarity=0.888  Sum_probs=75.2

Q ss_pred             CcccchhhHhHHHHHHhhhcC------------CCccCCCCceEEEeecC-CCceEEEEecCCCCchhHHHhhhhhHHhc
Q 042279            1 MAIRFLRIVNSKQALRRALMV------------PEASTVPKGHFAVYVGE-TERSRFVVPVSYPKHPSFQKLLSPAEEEF   67 (92)
Q Consensus         1 m~~~~~~~~~~k~~l~r~~~~------------~~~~~vpkG~~aVyVG~-~~~~RfvVp~~~L~hP~F~~LL~~aeeEf   67 (92)
                      ||.-..-...+||++|-.+-.            +...+|||||+|||||+ ++++||+||++|||||.|++||++|||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf   80 (108)
T PLN03219          1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC   80 (108)
T ss_pred             CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence            555555555777776622211            12367999999999998 46999999999999999999999999999


Q ss_pred             CCccCCCceeeeCCHHHHHHHHhc
Q 042279           68 GFHHPMGGLTIPCSEELFMDLTCR   91 (92)
Q Consensus        68 G~~~~~G~L~IPC~~~~F~~vl~~   91 (92)
                      ||+|++|+|+|||+++.|++++++
T Consensus        81 Gf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         81 GFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCEEEeCCHHHHHHHHHh
Confidence            999866999999999999999975

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=84.45  E-value=0.69  Score=29.27  Aligned_cols=55  Identities=22%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             EEeecCCCceEEEEecCCCC-ch--hHHHhhhhhHHhcCCccCCCceeeeCCHHHHHHHHhc
Q 042279           33 AVYVGETERSRFVVPVSYPK-HP--SFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCR   91 (92)
Q Consensus        33 aVyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~   91 (92)
                      .+=||.   ++|.++.+.|. +|  .|..+++...... ++.++|.+-|-++...|++|+.-
T Consensus         2 ~lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~-~~~~~~~~fiDRdp~~F~~IL~y   59 (94)
T PF02214_consen    2 RLNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDD-YDDDDGEYFIDRDPELFEYILNY   59 (94)
T ss_dssp             EEEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGG-EETTTTEEEESS-HHHHHHHHHH
T ss_pred             EEEECC---EEEEEcHHHHhhCCCChhhhHHhhccccc-cCCccceEEeccChhhhhHHHHH
Confidence            345775   99999998887 54  6778877652222 22234899999999999999864

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=82.14  E-value=1.1  Score=33.24  Aligned_cols=23  Identities=26%  Similarity=0.671  Sum_probs=20.1

Q ss_pred             hHHHhhhhhHHhcCCccCCCceee
Q 042279           55 SFQKLLSPAEEEFGFHHPMGGLTI   78 (92)
Q Consensus        55 ~F~~LL~~aeeEfG~~~~~G~L~I   78 (92)
                      .|.++|++|..|+||.-+ |||+|
T Consensus        40 lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         40 LFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHhhhccCcccC-CeEEE
Confidence            477789999999999976 99986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00