Citrus Sinensis ID: 042291

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MQSDQHFHPKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDSDDIDALLSLEEGDEEEEYDEEEVSTARTCGIYGSDSPDSTSTYDSEPQHNKFSSMLKSSGSSSKCHNGKKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGNMKN
Secondary Structure (PSIPRED)
cccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHcccccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEEccccccEEEEcHHHHHHcccccccccccccccccEcccccccccEEEccccccHHHHHHHHccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mqsdqhfhpkrimrpllsqvsgdyvhipvaspfgadlppaanpptpfqgvefhpsevcpknfiifdqtdhrsqimfhpaiahkfmgpsfnfhatyiqdnferhdatnvgremassfkedsdDIDALLsleegdeeeeydeeevstartcgiygsdspdststydsepqhnkfssmlkssgssskchngkkrqKLKKMVNVLRgfvpggnelntvGVLDEAVRHLKSLKVEVQnlgvgnmkn
Flexible Loop (DISEMBL)
mqsdqhfhpkriMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMassfkedsddIDALLSleegdeeeeydeeevstartcgiygsdspdsTSTYDSEPQHNKFSsmlkssgssskchngkkrqklkKMVNVLRGfvpggnelnTVGVLDEAVRHLKSLKvevqnlgvgnmkn
Low Complexity Region (SEG)
MQSDQHFHPKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDSDDIDALLSLeegdeeeeydeeeVSTARTCGIYGsdspdststydsEPQHNkfssmlkssgssskchngkkRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGNMKN
Disordered region (IsUnstruct)
***************LLSQVSGDYVHIPVASPFG************FQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFE**********************************************************************************************KMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQN********
Disordered Region (DISOPRED)
**************PLL******Y**IPVASPFG***********************CPKNFIIFDQTDHRSQIMF*************************************************************************************************************************VNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQ**GV*****
Disordered Region (DISEMBL)
********PKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDSDDIDALLSLEE**************ARTCGIYGS***************************************LKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGNMKN
Disordered Region (DISPRO)
*****HFHPKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHD****GREMASSFKEDSDDIDALLSL*********DEEEVSTAR*C********************************************LKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGN***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSDQHFHPKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDSDDIDALLSLEEGDEEEEYDEEEVSTARTCGIYGSDSPDSTSTYDSEPQHNKFSSMLKSSGSSSKCHNGKKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGNMKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9ASX9	251	Transcription factor bHLH	yes	no	0.892	0.856	0.470	2e-33
Q9FGB0	311	Transcription factor bHLH	no	no	0.796	0.617	0.276	9e-06
O81313	198	Transcription factor IND	no	no	0.190	0.232	0.369	0.0004
Q8S3D2	373	Transcription factor bHLH	no	no	0.190	0.123	0.369	0.0004
Q9FHA2	210	Transcription factor ALC	no	no	0.207	0.238	0.36	0.0005
Q8GZM7	478	Transcription factor PIF1	no	no	0.331	0.167	0.240	0.0006

>sp|Q9ASX9|BH144_ARATH Transcription factor bHLH144 OS=Arabidopsis thaliana GN=BHLH144 PE=1 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/234 (47%), Positives = 145/234 (61%), Gaps = 19/234 (8%)

Query: 25  VHIPVAS--PFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAH 82
           +H P AS   + A  PP A    P+ GVE  PS VCPKNF+IFDQT  RSQ+M+HP + H
Sbjct: 18  MHNPYASGSSYDALFPPCAK--LPYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHPELTH 75

Query: 83  KFMG-PSFNFHATYIQDNFERHDATNVG---REMASSFKEDSDDIDALLSLEE------- 131
           K M  PS N  A+  Q+ +      N G   +E++SS++ED ++IDALLS +E       
Sbjct: 76  KLMNTPSLNNLASTFQNEYVGGSYGNYGNYEQEVSSSYQEDPNEIDALLSADEDYEENDD 135

Query: 132 -GDEEEEYDEEEVSTARTCGI-YGSDSPDST-STYDSEPQHNKFSSMLKSSGSSSKCHN- 187
              EE+  D EEVSTART    YG+ + +S  S+Y     +N  S     SGS+S  +N 
Sbjct: 136 NEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSSYGYNNNNNNNSRKQSLSGSASSSNND 195

Query: 188 GKKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGNMKN 241
           GK R+K+KKM+ VLR  VPGG ++NT  VLDEAV++LKSLK+E Q LGVG+  N
Sbjct: 196 GKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKIEAQKLGVGHFSN 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGB0|BH145_ARATH Transcription factor bHLH145 OS=Arabidopsis thaliana GN=BHLH145 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 43/235 (18%)

Query: 37  LPP----AANPPTPFQGVEFHPSEVCP-KNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNF 91
           LPP        P    GV     E C  K F++FDQ+  ++ ++    I   F   +   
Sbjct: 79  LPPQNQCMKQVPLQVDGVISKAEEQCSQKRFLVFDQSGDQTTLLLASDIRKSF--ETLKQ 136

Query: 92  HAT-YIQDNFERHDA-TNVGREMASS----FKEDSDDIDALLSLEEGDEEEEY--DEEEV 143
           HA   +++  +R +    V   M  +     KEDS++++ALL  E+   E  Y  +E+EV
Sbjct: 137 HACPDMKEELQRSNKDLFVCHGMQGNSEPDLKEDSEELNALLYSED---ESGYCSEEDEV 193

Query: 144 STA-RTCGIYGSDSPDSTSTYDS--EPQHNKFSSMLKSSGSSSK--------CHNGK--- 189
           ++A  +  I  S   D  +   S  +P + K   +L++S  S +        C N +   
Sbjct: 194 TSADHSPSIVVSGREDQKTFLGSYGQPLNAKKRKILETSNESMRDAESSCGSCDNTRISF 253

Query: 190 -KRQKLK----------KMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQN 233
            KR KL           + V++LR  VPG   ++ + V+D A+ +LKSLK+E +N
Sbjct: 254 LKRSKLSSNKIGEEKIFETVSLLRSVVPGEELVDPILVIDRAIDYLKSLKMEAKN 308

Arabidopsis thaliana (taxid: 3702)

>sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 34/46 (73%)

Query: 189 KKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNL 234
           ++R+++ + + +L+  VPGG +++T  +LDEA+R+ K LK +V+ L
Sbjct: 129 RRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRIL 174

Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 33/46 (71%)

Query: 189 KKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNL 234
           ++R+++ + + VL+  VPGG +++T  +LDEA  +LK L+ +V+ L
Sbjct: 286 QRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKAL 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 189 KKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGN 238
           K+R K+ + +  L+  +P  N+ +   +LDEA+ +LK L+++VQ L V N
Sbjct: 104 KRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTLAVMN 153

Required for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 158 DSTSTYDSEPQHNKFSSMLKSSGSSSKCHN---GKKRQKLKKMVNVLRGFVPGGNELNTV 214
           D T +   E +  + S+       +++ HN    K+R ++ + +  L+  +P  N+ +  
Sbjct: 261 DETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKA 320

Query: 215 GVLDEAVRHLKSLKVEVQNLGVG 237
            +LDEA+ ++KSL++++Q + +G
Sbjct: 321 SMLDEAIEYMKSLQLQIQMMSMG 343

Transcription activator. Regulates negatively chlorophyll biosynthesis and seed germination in the dark, and lightinduced degradation of PIF1 relieves this negative regulation to promote photomorphogenesis. Binds to the G-box motif (5'-CACGTG-3') found in many light-regulated promoters. Promotes the expression of SOM, and thus modulates responses to abscisic acid (ABA) and gibberellic acid (GA).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
255557377	239	conserved hypothetical protein [Ricinus	0.991	1.0	0.647	2e-76
268374460	241	bHLH1 transcription factor [Hevea brasil	0.995	0.995	0.611	8e-67
147767796	289	hypothetical protein VITISV_036406 [Viti	0.991	0.826	0.619	2e-65
225463438	244	PREDICTED: transcription factor bHLH144	0.991	0.979	0.619	5e-65
224114345	227	predicted protein [Populus trichocarpa]	0.941	1.0	0.624	3e-63
449433686	249	PREDICTED: transcription factor bHLH144-	1.0	0.967	0.508	3e-49
356512179	237	PREDICTED: transcription factor bHLH144-	0.970	0.987	0.485	1e-46
356524955	239	PREDICTED: transcription factor bHLH144-	0.966	0.974	0.487	2e-44
357476411	238	Transcription factor bHLH144 [Medicago t	0.883	0.894	0.515	3e-44
357476409	262	Transcription factor bHLH144 [Medicago t	0.883	0.812	0.515	4e-44

>gi|255557377|ref|XP_002519719.1| conserved hypothetical protein [Ricinus communis] gi|223541136|gb|EEF42692.1| conserved hypothetical protein [Ricinus communis]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/241 (64%), Positives = 183/241 (75%), Gaps = 2/241 (0%)

Query: 1   MQSDQHFHPKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPK 60
           MQSDQHF  K+ +    +Q   +Y+H+PVAS F A  P AA    P  G+EF PSEVCPK
Sbjct: 1   MQSDQHFRRKKAVPHFANQRGNNYMHVPVASSFPAAPPTAAKHLMPVHGIEFQPSEVCPK 60

Query: 61  NFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDS 120
           NFIIFDQTDHRSQIMFHP +AH+F GP  N HA+Y Q+N+ER    + GREM SS KEDS
Sbjct: 61  NFIIFDQTDHRSQIMFHPTVAHRFNGPGLNMHASYFQENYEREAVDDTGREM-SSLKEDS 119

Query: 121 DDIDALLSLEEGDEEEEYDEEEVSTARTCGIYGSDSPDSTSTYDSEPQHNKFSSMLKSSG 180
           DDIDALLSLEE +E++E DEEEVSTART G YGS SPDS STY S+P+    SS+ KS G
Sbjct: 120 DDIDALLSLEE-EEQDECDEEEVSTARTYGNYGSSSPDSCSTYGSKPRKTGSSSVQKSPG 178

Query: 181 SSSKCHNGKKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGNMK 240
           S S C   +KRQK+KKMV  LRG VPGG+++NTV VLDEAVR+LKSLKVEVQ +GVGN+K
Sbjct: 179 SGSSCSTERKRQKMKKMVKALRGIVPGGDQMNTVTVLDEAVRYLKSLKVEVQKIGVGNLK 238

Query: 241 N 241
           N
Sbjct: 239 N 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268374460|gb|ACZ04445.1| bHLH1 transcription factor [Hevea brasiliensis]

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 148/242 (61%), Positives = 180/242 (74%), Gaps = 2/242 (0%)

Query: 1   MQSDQHFHPKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPK 60
           MQSDQ F P + +    +Q   +Y+HIPVA  F A LPP      P  G+EF PSEVCPK
Sbjct: 1   MQSDQQFQPNKAVPHFANQRGNNYMHIPVAPSFAAALPPTGKHLMPAHGIEFQPSEVCPK 60

Query: 61  NFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREM-ASSFKED 119
           NFIIFDQ DHRSQIMFHPA+AHKF GP  N + +Y  +NF+R +   + RE+ +SS KED
Sbjct: 61  NFIIFDQNDHRSQIMFHPAVAHKFSGPGLNMYGSYNPENFDREEINGIEREVSSSSLKED 120

Query: 120 SDDIDALLSLEEGDEEEEYDEEEVSTARTCGIYGSDSPDSTSTYDSEPQHNKFSSMLKSS 179
           SDDIDALLSLEE DE++EYDEEEVSTART G +GS+SPDS ST  S+P  N  SS+  SS
Sbjct: 121 SDDIDALLSLEE-DEQDEYDEEEVSTARTYGNHGSNSPDSYSTCGSKPWKNGSSSIQNSS 179

Query: 180 GSSSKCHNGKKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGNM 239
           G+ S  ++ +KRQK+KKMV  LRG VPGG+++NTV V+DEAVR+LKSLKVEVQ +G GN 
Sbjct: 180 GNGSSINSERKRQKMKKMVKALRGIVPGGDQMNTVMVIDEAVRYLKSLKVEVQKIGAGNF 239

Query: 240 KN 241
           KN
Sbjct: 240 KN 241

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767796|emb|CAN76054.1| hypothetical protein VITISV_036406 [Vitis vinifera]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 150/242 (61%), Positives = 179/242 (73%), Gaps = 3/242 (1%)

Query: 1   MQSDQHFHPKRIMRPLLSQVSGDYVH-IPVASPFGADLPPAANPPTPFQGVEFHPSEVCP 59
           MQ DQ F P+++M PL ++V  DY++  PV S FGA  PP A    PF GVEF PS+VCP
Sbjct: 46  MQRDQQFCPEKVMLPLANEVGNDYMYNTPVESAFGAVFPPGAKDLGPFHGVEFQPSDVCP 105

Query: 60  KNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKED 119
           KNFIIFDQTDHRSQIMFHPAIA KF  PS N  ATYI +N E+ +      E +S+ KED
Sbjct: 106 KNFIIFDQTDHRSQIMFHPAIAQKFNCPSLNLCATYIHNNLEKREINIDEGEASSALKED 165

Query: 120 SDDIDALLSLEEGDEEEEYDEEEVSTARTCGIYGSDSPDSTSTYDSEPQ-HNKFSSMLKS 178
           S+DIDALLSLEE D+EE  DEEEVSTART G YGS+  D+ S+Y S+P+     SS+LKS
Sbjct: 166 SEDIDALLSLEEEDQEEY-DEEEVSTARTHGNYGSNCEDTCSSYGSKPRKIKLSSSILKS 224

Query: 179 SGSSSKCHNGKKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGN 238
           S S S C++ +KRQK+KKMV  LRG VPG +++NTV VLDEAVR+LKSLKVEVQ LGV N
Sbjct: 225 SSSGSSCNSERKRQKMKKMVKALRGIVPGSSQMNTVAVLDEAVRYLKSLKVEVQKLGVSN 284

Query: 239 MK 240
            K
Sbjct: 285 SK 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463438|ref|XP_002275393.1| PREDICTED: transcription factor bHLH144 isoform 2 [Vitis vinifera] gi|225463440|ref|XP_002275365.1| PREDICTED: transcription factor bHLH144 isoform 1 [Vitis vinifera]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 150/242 (61%), Positives = 181/242 (74%), Gaps = 3/242 (1%)

Query: 1   MQSDQHFHPKRIMRPLLSQVSGDYVH-IPVASPFGADLPPAANPPTPFQGVEFHPSEVCP 59
           MQ DQ F P+++M PL ++V  DY++  PV S FGA  PP A    PF GVEF PS+VCP
Sbjct: 1   MQRDQQFCPEKVMLPLANEVGNDYMYNTPVESAFGAVFPPGAKDLGPFHGVEFQPSDVCP 60

Query: 60  KNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKED 119
           KNFIIFDQTDHRSQIMFHPAIA KF  PS N  ATYI +N E+ +      E +S+ KED
Sbjct: 61  KNFIIFDQTDHRSQIMFHPAIAQKFNCPSLNLCATYIHNNLEKREINIDEGEASSALKED 120

Query: 120 SDDIDALLSLEEGDEEEEYDEEEVSTARTCGIYGSDSPDSTSTYDSEPQ-HNKFSSMLKS 178
           S+DIDALLSLEE +++EEYDEEEVSTART G YGS+  D+ S+Y S+P+     SS+LKS
Sbjct: 121 SEDIDALLSLEE-EDQEEYDEEEVSTARTHGNYGSNCEDTCSSYGSKPRKIKLSSSILKS 179

Query: 179 SGSSSKCHNGKKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGN 238
           S S S C++ +KRQK+KKMV  LRG VPG +++NTV VLDEAVR+LKSLKVEVQ LGV N
Sbjct: 180 SSSGSSCNSERKRQKMKKMVKALRGIVPGSSQMNTVAVLDEAVRYLKSLKVEVQKLGVSN 239

Query: 239 MK 240
            K
Sbjct: 240 SK 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114345|ref|XP_002316733.1| predicted protein [Populus trichocarpa] gi|222859798|gb|EEE97345.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 143/229 (62%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 13  MRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRS 72
           M PL +QV  + +H PVA+ F A  P AA    P  G+EF  SE+CP+NFIIFDQ DHRS
Sbjct: 1   MPPLTNQVDNNNMHFPVATTFAAVQPLAAKHLMPVHGIEFQSSEICPRNFIIFDQADHRS 60

Query: 73  QIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDSDDIDALLSLEEG 132
           Q+M++PA+AH   GP FN HATYIQ+NFER D  NV RE++SS KEDSDDIDAL+SLEE 
Sbjct: 61  QVMYNPAVAHNHGGPDFNIHATYIQENFERTDTYNVEREISSSLKEDSDDIDALMSLEEE 120

Query: 133 DEEEEYDEEEVSTARTCGIYGSDSPDSTSTYDSEPQHNKFSSMLKSSGSSSKCHNGKKRQ 192
           + EE  D EEVSTARTC  YGS SPDS S+Y ++P  N  SS+ K S S S  ++ +KRQ
Sbjct: 121 EPEEC-DGEEVSTARTCRNYGSSSPDSCSSYGAKPMKNG-SSVQKCSSSGSSSNSERKRQ 178

Query: 193 KLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVGNMKN 241
           K+K MV  LRG VPGG+++NTV VLDEAVR+LKSLKVEVQ LGVGN KN
Sbjct: 179 KMKTMVKTLRGIVPGGDQMNTVTVLDEAVRYLKSLKVEVQKLGVGNFKN 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433686|ref|XP_004134628.1| PREDICTED: transcription factor bHLH144-like isoform 1 [Cucumis sativus] gi|449433688|ref|XP_004134629.1| PREDICTED: transcription factor bHLH144-like isoform 2 [Cucumis sativus] gi|449433690|ref|XP_004134630.1| PREDICTED: transcription factor bHLH144-like isoform 3 [Cucumis sativus] gi|449530105|ref|XP_004172037.1| PREDICTED: transcription factor bHLH144-like [Cucumis sativus]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/246 (50%), Positives = 167/246 (67%), Gaps = 5/246 (2%)

Query: 1   MQSDQHFHPKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPK 60
           MQSD +F+ K+   P  +Q   +++ IP++S F + LPP      PF  VEF PSEVCP+
Sbjct: 4   MQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQ 63

Query: 61  NFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDS 120
           NFIIFD TD+RSQIMFHPA+A+K  GP+ N  + YIQ NF  +D  +  RE++S   ED 
Sbjct: 64  NFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLMEDL 123

Query: 121 DDIDALLSLEEGDEE--EEYDEEEVSTARTCGIYGSD--SPDSTSTYDSEPQHN-KFSSM 175
           DDIDALLSLE  + E  +  +++EVSTAR+   YG+      S+STY S+P+ N  F+ +
Sbjct: 124 DDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSFNPV 183

Query: 176 LKSSGSSSKCHNGKKRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLG 235
            KSS S S C++  K+ KLKKMV  LR  +PGG ++ TV VLDEAV++LKSLK EVQ LG
Sbjct: 184 HKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKLG 243

Query: 236 VGNMKN 241
           VG ++N
Sbjct: 244 VGGLEN 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512179|ref|XP_003524798.1| PREDICTED: transcription factor bHLH144-like [Glycine max]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/237 (48%), Positives = 157/237 (66%), Gaps = 3/237 (1%)

Query: 1   MQSDQHFHPKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPK 60
           MQ+ ++F P +++ PL  +    ++  P+AS F A LPP     TPF+     PSE CPK
Sbjct: 1   MQTQEYFLPDKMVLPLADEAIDPHMRAPLASAFDAYLPPGVRQITPFERFNVQPSEACPK 60

Query: 61  NFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDS 120
           NF+IFDQTD RS+IMFHPA+ +KF  P  N HAT  QD FE++ A  + RE++S F+ED 
Sbjct: 61  NFVIFDQTDQRSRIMFHPAMTYKFNSPGLNVHATGSQD-FEKNKANQMEREVSSPFEEDP 119

Query: 121 DDIDALLSLEEGDEEEEYDEEEVSTARTCGIYGSDSPDSTSTYDSEPQHNKFSSMLKSSG 180
           +DIDALLS+   + ++  DEEEVSTART   Y S S   +S      + +  SS+ KSSG
Sbjct: 120 NDIDALLSIGVDELDDF-DEEEVSTARTQENYESLSDTCSSYCSKSRKRSSSSSVQKSSG 178

Query: 181 SSSKCHNGKKRQKLKKMVNVLRGFVP-GGNELNTVGVLDEAVRHLKSLKVEVQNLGV 236
           +   CHN  K  ++K+MV +LR  VP GGN++++V VLDEAV++LKSLKVEV+  GV
Sbjct: 179 AGGFCHNEGKHWEMKRMVRMLRKIVPGGGNQMDSVAVLDEAVKYLKSLKVEVEQFGV 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524955|ref|XP_003531093.1| PREDICTED: transcription factor bHLH144-like [Glycine max]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/240 (48%), Positives = 164/240 (68%), Gaps = 7/240 (2%)

Query: 1   MQSDQHFHPKRIMRPLLSQVSGDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPK 60
           MQ+ ++F P ++  PL  +    ++H P+AS F A LPP     TP +  +  PSE CPK
Sbjct: 1   MQTREYFLPDKMGLPLADETIDPHMHAPLASTFDAYLPPGVRQITPIERFKLLPSEACPK 60

Query: 61  NFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDS 120
           NF+IFDQTD +S+IMFHPA+ +KF  PS + HAT  QD FE++    + RE++S+F+ED 
Sbjct: 61  NFVIFDQTDQQSRIMFHPAMTYKFDSPSLHAHATGSQD-FEKNKVNQMERELSSAFEEDP 119

Query: 121 DDIDALLSLEEGDEEEEYDEEEVSTARTCGIYGSDSPDSTSTY---DSEPQHNKFSSMLK 177
           +DIDALLS+   DE E++DEEEVSTART   Y S S D+ S+Y     + + +  SS+ K
Sbjct: 120 NDIDALLSI-GADELEDFDEEEVSTARTREKYESLS-DTCSSYCSKSRKKRSSSSSSVQK 177

Query: 178 SSGSSSKCHNGKKRQKLKKMVNVLRGFVP-GGNELNTVGVLDEAVRHLKSLKVEVQNLGV 236
           SSG+   CHN  K Q++K+MV +LR  VP GGN++++V VL+EAV++LKSLKVEV+   V
Sbjct: 178 SSGAGGYCHNEGKHQEIKRMVRMLRKIVPDGGNQMDSVAVLNEAVKYLKSLKVEVEQFRV 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476411|ref|XP_003608491.1| Transcription factor bHLH144 [Medicago truncatula] gi|355509546|gb|AES90688.1| Transcription factor bHLH144 [Medicago truncatula]

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 150/219 (68%), Gaps = 6/219 (2%)

Query: 22  GDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIA 81
           G Y+++  AS F A LPP+A   TPF+     PSEVCPKNFI+FDQTD +++I+FHPA  
Sbjct: 22  GTYMNLSHASTFDAVLPPSARQITPFERFNLQPSEVCPKNFIVFDQTDQQNRILFHPATT 81

Query: 82  HKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDSDDIDALLSLEEGDEEEEYDEE 141
           +KF  P FN HAT  QD FE+     +  E++SSF EDS DIDALLSL+  + E+  DEE
Sbjct: 82  YKFNSPGFNSHATCNQD-FEKDKINQMETELSSSFVEDSKDIDALLSLDSDELEDY-DEE 139

Query: 142 EVSTARTCGIYGSDSPDSTSTYDSEPQHNK-FSSMLKSSGSSSKCHNGKKRQ-KLKKMVN 199
           EVSTART     S S D+ S+Y ++ +  +  SS   SSG+   C + KK+  ++K+MV 
Sbjct: 140 EVSTARTHEKDDSTS-DTCSSYCTKSRKKRLLSSAHNSSGTKGYCISEKKQHLEMKRMVK 198

Query: 200 VLRGFVP-GGNELNTVGVLDEAVRHLKSLKVEVQNLGVG 237
           +LR  VP GGN+++TV VLDEAV++LKSLKVEV+  GVG
Sbjct: 199 ILRNIVPGGGNQMDTVTVLDEAVKYLKSLKVEVEQFGVG 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476409|ref|XP_003608490.1| Transcription factor bHLH144 [Medicago truncatula] gi|355509545|gb|AES90687.1| Transcription factor bHLH144 [Medicago truncatula]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 150/219 (68%), Gaps = 6/219 (2%)

Query: 22  GDYVHIPVASPFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIA 81
           G Y+++  AS F A LPP+A   TPF+     PSEVCPKNFI+FDQTD +++I+FHPA  
Sbjct: 46  GTYMNLSHASTFDAVLPPSARQITPFERFNLQPSEVCPKNFIVFDQTDQQNRILFHPATT 105

Query: 82  HKFMGPSFNFHATYIQDNFERHDATNVGREMASSFKEDSDDIDALLSLEEGDEEEEYDEE 141
           +KF  P FN HAT  QD FE+     +  E++SSF EDS DIDALLSL+  + E+  DEE
Sbjct: 106 YKFNSPGFNSHATCNQD-FEKDKINQMETELSSSFVEDSKDIDALLSLDSDELEDY-DEE 163

Query: 142 EVSTARTCGIYGSDSPDSTSTYDSEPQHNK-FSSMLKSSGSSSKCHNGKKRQ-KLKKMVN 199
           EVSTART     S S D+ S+Y ++ +  +  SS   SSG+   C + KK+  ++K+MV 
Sbjct: 164 EVSTARTHEKDDSTS-DTCSSYCTKSRKKRLLSSAHNSSGTKGYCISEKKQHLEMKRMVK 222

Query: 200 VLRGFVP-GGNELNTVGVLDEAVRHLKSLKVEVQNLGVG 237
           +LR  VP GGN+++TV VLDEAV++LKSLKVEV+  GVG
Sbjct: 223 ILRNIVPGGGNQMDTVTVLDEAVKYLKSLKVEVEQFGVG 261

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2198253	251	AT1G29950 [Arabidopsis thalian	0.933	0.896	0.395	2.8e-34
UNIPROTKB|Q6Z861	254	P0572D06.2 "cDNA clone:002-118	0.419	0.397	0.410	1.4e-29
UNIPROTKB|Q75H21	384	OSJNBa0027H16.21 "Putative unc	0.352	0.221	0.406	1.9e-25
UNIPROTKB|Q67TR8	236	B1342C04.6 "Basic helix-loop-h	0.182	0.186	0.386	0.00033
UNIPROTKB|Q8S0N2	393	P0692C11.41-1 "BHLH transcript	0.182	0.111	0.454	0.00052
UNIPROTKB|Q75KP4	315	OSJNBa0065F09.5 "Expressed pro	0.186	0.142	0.444	0.0006
TAIR|locus:2170111	311	AT5G50010 [Arabidopsis thalian	0.174	0.135	0.404	0.00063
UNIPROTKB|Q6Z9R3	246	P0461F06.33 "BHLH protein fami	0.182	0.178	0.386	0.00069

TAIR|locus:2198253 AT1G29950 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 97/245 (39%), Positives = 124/245 (50%)

Query:    15 PLLSQVSGDY-VHIPVAS--PFGADLPPAANPPTPFQGVEFHPSEVCPKNFIIFDQTDHR 71
             P  S   GD  +H P AS   + A  PP A    P+ GVE  PS VCPKNF+IFDQT  R
Sbjct:     7 PHFSDEVGDRNMHNPYASGSSYDALFPPCAK--LPYHGVELQPSAVCPKNFVIFDQTYDR 64

Query:    72 SQIMFHPAIAHKFMG-PSFNFHATYIQDNFERHDATNVG---REMASSFKEDSDDIDALL 127
             SQ+M+HP + HK M  PS N  A+  Q+ +      N G   +E++SS++ED ++IDALL
Sbjct:    65 SQVMYHPELTHKLMNTPSLNNLASTFQNEYVGGSYGNYGNYEQEVSSSYQEDPNEIDALL 124

Query:   128 SLXXXXXXXXXX--------XXXVSTARTCGI-YGXXXXXX--XXXXXXEPQHNXXXXXX 176
             S                      VSTART    YG                 +N      
Sbjct:   125 SADEDYEENDDNEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSSYGYNNNNNNNSRKQS 184

Query:   177 XXXXXXXXXXXXXXRQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGV 236
                           R+K+KKM+ VLR  VPGG ++NT  VLDEAV++LKSLK+E Q LGV
Sbjct:   185 LSGSASSSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKIEAQKLGV 244

Query:   237 GNMKN 241
             G+  N
Sbjct:   245 GHFSN 249

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q6Z861 P0572D06.2 "cDNA clone:002-118-A09, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 182 (69.1 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 48/117 (41%), Positives = 63/117 (53%)

Query:    44 PTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAHKFMGPSFNFHATYIQDNFERH 103
             P P   +EF PS  CPKN++IFDQT  +S++MFHP++AHKF G S + +   +      H
Sbjct:    68 PAPMNELEFQPSATCPKNYVIFDQTCTKSRVMFHPSLAHKFGGGS-SAYDNNVYGGGGAH 126

Query:   104 DAT------NVGREMASSF----KEDSDDIDALLSLXXXXXXXXXXXXXVSTARTCG 150
             DA       +VG +   S     KED+D+IDALLS              VST RT G
Sbjct:   127 DAAKGAYRDSVGYDDDDSCSVRQKEDTDEIDALLS-----SEDGDEDDVVSTGRTPG 178

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q75H21 OSJNBa0027H16.21 "Putative uncharacterized protein OSJNBa0027H16.21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 171 (65.3 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
 Identities = 39/96 (40%), Positives = 55/96 (57%)

Query:    44 PTPFQGVEFHPSEVCPKNFIIFDQTDHRSQIMFHPAIAHKF--MGPSFNFHATYIQDNFE 101
             P P  GVEF PS+ CPKN++IFDQT  RS++MFHP++A+     G  ++ H       FE
Sbjct:    65 PAPLTGVEFQPSDTCPKNYVIFDQTYDRSRVMFHPSLANNLGNSGGGYDHHHHCGYGGFE 124

Query:   102 RHDATNV---------GREMASSFKEDSDDIDALLS 128
             +  A+           G   +   KED+D+IDAL+S
Sbjct:   125 QDYASKSAYYGVEDDGGGGCSIRQKEDTDEIDALMS 160

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q67TR8 B1342C04.6 "Basic helix-loop-helix (BHLH)-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 104 (41.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
 Identities = 17/44 (38%), Positives = 33/44 (75%)

Query:   191 RQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNL 234
             R+++ + + +L+  VPGG +++T  +LDEA+ ++K LK +VQ+L
Sbjct:   160 RERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKSQVQSL 203

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q8S0N2 P0692C11.41-1 "BHLH transcription factor-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 104 (41.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query:   191 RQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNL 234
             R+++   + VL+  VPGGN+++T  +LDEA  +LK LK +VQ L
Sbjct:   294 RERVSDRLRVLQKLVPGGNKMDTASMLDEAASYLKFLKSQVQKL 337

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q75KP4 OSJNBa0065F09.5 "Expressed protein (With alternative splicing)" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 97 (39.2 bits), Expect = 0.00060, Sum P(2) = 0.00060
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query:   191 RQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLG 235
             R+++++ V  LR  VPGG   +   VLDEA+ +LK LK++V+ LG
Sbjct:   267 RERIQETVAALRKIVPGGIAKDATAVLDEAICYLKYLKLKVKTLG 311

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2170111 AT5G50010 [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00063, Sum P(2) = 0.00063
 Identities = 17/42 (40%), Positives = 30/42 (71%)

Query:   192 QKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQN 233
             +K+ + V++LR  VPG   ++ + V+D A+ +LKSLK+E +N
Sbjct:   267 EKIFETVSLLRSVVPGEELVDPILVIDRAIDYLKSLKMEAKN 308

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048446 "petal morphogenesis" evidence=RCA

UNIPROTKB|Q6Z9R3 P0461F06.33 "BHLH protein family-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 106 (42.4 bits), Expect = 0.00069, P = 0.00069
 Identities = 17/44 (38%), Positives = 33/44 (75%)

Query:   191 RQKLKKMVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNL 234
             R+++ + + +L+  VPGG +++T  +LDEA+ ++K LK +VQ+L
Sbjct:   170 RERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSL 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       196   0.00080  111 3  11 22  0.46    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  159 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.44u 0.09s 17.53t   Elapsed:  00:00:01
  Total cpu time:  17.44u 0.09s 17.53t   Elapsed:  00:00:01
  Start:  Mon May 20 23:47:40 2013   End:  Mon May 20 23:47:41 2013

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ASX9	BH144_ARATH	No assigned EC number	0.4700	0.8921	0.8565	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
smart00353	53	smart00353, HLH, helix loop helix domain	0.001
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	0.003

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 189 KKRQKLKKMVNVLRGFVPGGNE---LNTVGVLDEAVRHLKSLKVEVQ 232
           ++R+K+ +  + LR  +P   +   L+   +L  A+ ++KSL+ E+Q
Sbjct: 6   RRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 189 KKRQKLKKMVNVLRGFVPG---GNELNTVGVLDEAVRHLKSLKVEVQ 232
           ++R+++    + LR  +P      +L+   +L +AV ++KSL+  +Q
Sbjct: 14  RRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
smart00353	53	HLH helix loop helix domain.	99.04
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	98.92
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	98.65
KOG1318	411	consensus Helix loop helix transcription factor EB	97.62
KOG4304	250	consensus Transcriptional repressors of the hairy/	97.35
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	96.97
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	96.84
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	95.76
KOG0561	373	consensus bHLH transcription factor [Transcription	95.76
PLN03217	93	transcription factor ATBS1; Provisional	95.53
KOG3960	284	consensus Myogenic helix-loop-helix transcription	93.83
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	92.46
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	91.45

>smart00353 HLH helix loop helix domain

Probab=99.04  E-value=4.3e-10  Score=77.03  Aligned_cols=44  Identities=30%  Similarity=0.565  Sum_probs=41.5

Q ss_pred             hhHHHHHHHHHHhhccCC---CCCCcchhhHHHHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVP---GGNELNTVGVLDEAVRHLKSLKVEVQ  232 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVP---g~~~~D~asvLdEaI~YLKsLk~qV~  232 (241)
                      +||++|++.|..|+.+||   ++.++++++||++||+||+.|+.+++
T Consensus         6 ~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        6 RRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            499999999999999999   57899999999999999999999986

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=98.92  E-value=1.8e-09  Score=74.98  Aligned_cols=44  Identities=27%  Similarity=0.489  Sum_probs=41.5

Q ss_pred             hhHHHHHHHHHHhhccCCCC---CCcchhhHHHHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVPGG---NELNTVGVLDEAVRHLKSLKVEVQ  232 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~---~~~D~asvLdEaI~YLKsLk~qV~  232 (241)
                      +||++|++.|..|+.+||+.   .++|+++||+.||+||+.|+.+++
T Consensus        14 ~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083          14 RRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            49999999999999999998   899999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=98.65  E-value=4.2e-08  Score=68.32  Aligned_cols=40  Identities=23%  Similarity=0.550  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHhhccCCCC-----CCcchhhHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVPGG-----NELNTVGVLDEAVRHLKSLK  228 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~-----~~~D~asvLdEaI~YLKsLk  228 (241)
                      +||++|+..|..|+.+||..     .++++++||..||+||+.||
T Consensus        11 ~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen   11 RRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            48999999999999999987     67899999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=97.62  E-value=6.3e-05  Score=72.89  Aligned_cols=44  Identities=16%  Similarity=0.345  Sum_probs=39.3

Q ss_pred             hhHHHHHHHHHHhhccCCCC----CCcchhhHHHHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVPGG----NELNTVGVLDEAVRHLKSLKVEVQ  232 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~----~~~D~asvLdEaI~YLKsLk~qV~  232 (241)
                      |||++||.+++.|..|||.+    .+.+|-.||.-+++|++.||..-+
T Consensus       243 RRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  243 RRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            58999999999999999997    244689999999999999998766

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=97.35  E-value=6.8e-05  Score=68.20  Aligned_cols=44  Identities=25%  Similarity=0.578  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHHHhhccCCCC--------CCcchhhHHHHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVPGG--------NELNTVGVLDEAVRHLKSLKVEVQ  232 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~--------~~~D~asvLdEaI~YLKsLk~qV~  232 (241)
                      |||+|||+-|..|+.|||..        .+++||-||+=|++|||.|+...+
T Consensus        42 kRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   42 KRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence            69999999999999999973        456899999999999999997643

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=96.97  E-value=0.00076  Score=70.09  Aligned_cols=47  Identities=28%  Similarity=0.461  Sum_probs=42.4

Q ss_pred             cccchh-hHHHHHHHHHHhhccCCCCC----CcchhhHHHHHHHHHHHHHHH
Q 042291          184 KCHNGK-KRQKLKKMVNVLRGFVPGGN----ELNTVGVLDEAVRHLKSLKVE  230 (241)
Q Consensus       184 ~c~~~k-RRekI~e~~~~L~~lVPg~~----~~D~asvLdEaI~YLKsLk~q  230 (241)
                      .|..|| ||+|+|.-|.-|-.|||++.    |+||.+||..||+.||.++..
T Consensus        24 ~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   24 RSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            356675 89999999999999999965    899999999999999999875

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=96.84  E-value=0.0012  Score=59.07  Aligned_cols=52  Identities=19%  Similarity=0.359  Sum_probs=42.1

Q ss_pred             CCccccchhhHHHHHHHHHHhhccCCCCC-------CcchhhHHHHHHHHHHHHHHHHHH
Q 042291          181 SSSKCHNGKKRQKLKKMVNVLRGFVPGGN-------ELNTVGVLDEAVRHLKSLKVEVQN  233 (241)
Q Consensus       181 a~s~c~~~kRRekI~e~~~~L~~lVPg~~-------~~D~asvLdEaI~YLKsLk~qV~~  233 (241)
                      ++..|.. +||+-||.-..-||.|||-+.       +.-+|.||-.||+|+..|+.+...
T Consensus        65 aHtqaEq-kRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~k  123 (229)
T KOG1319|consen   65 AHTQAEQ-KRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKK  123 (229)
T ss_pred             HHHHHHH-HHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444544 799999999999999999754       445899999999999999876543

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=95.76  E-value=0.018  Score=52.34  Aligned_cols=46  Identities=30%  Similarity=0.448  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHHHhhccCCCCCC--c-chhhHHHHHHHHHHHHHHHHHHh
Q 042291          189 KKRQKLKKMVNVLRGFVPGGNE--L-NTVGVLDEAVRHLKSLKVEVQNL  234 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~~~--~-D~asvLdEaI~YLKsLk~qV~~L  234 (241)
                      +||+.|++.+..|+.+||.+..  . +.++||+.|+.|+++|+.+....
T Consensus        69 ~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~  117 (232)
T KOG2483|consen   69 RRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ  117 (232)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence            4999999999999999998532  2 46999999999999998876543

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=95.76  E-value=0.0093  Score=56.72  Aligned_cols=46  Identities=20%  Similarity=0.398  Sum_probs=39.9

Q ss_pred             cchh-hHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHHHHHHHHHH
Q 042291          186 HNGK-KRQKLKKMVNVLRGFVPG--GNELNTVGVLDEAVRHLKSLKVEV  231 (241)
Q Consensus       186 ~~~k-RRekI~e~~~~L~~lVPg--~~~~D~asvLdEaI~YLKsLk~qV  231 (241)
                      +||| |-.-||.-|..||.|+|-  |+|.-||.||..|.+|+-+|+-+-
T Consensus        66 sNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~K  114 (373)
T KOG0561|consen   66 SNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHK  114 (373)
T ss_pred             chHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence            3455 458899999999999998  899999999999999999886543

>PLN03217 transcription factor ATBS1; Provisional

Probab=95.53  E-value=0.021  Score=45.48  Aligned_cols=45  Identities=18%  Similarity=0.431  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhhccCCCC------CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          191 RQKLKKMVNVLRGFVPGG------NELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       191 RekI~e~~~~L~~lVPg~------~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      -+.|++-+..||.|+|..      .+.-.+-||.||-.|+++|..+|..|.
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLS   69 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLS   69 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999973      456678899999999999999998875

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=93.83  E-value=0.14  Score=47.72  Aligned_cols=48  Identities=19%  Similarity=0.316  Sum_probs=39.6

Q ss_pred             hh-hHHHHHHHHHHhhc-cCCCC-CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          188 GK-KRQKLKKMVNVLRG-FVPGG-NELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       188 ~k-RRekI~e~~~~L~~-lVPg~-~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      || |-.||||.|.+|+. -+++- -..=|+-||--||+||..||.-+++++
T Consensus       126 ERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~  176 (284)
T KOG3960|consen  126 ERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQD  176 (284)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55 45899999999975 45663 556899999999999999999888775

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=92.46  E-value=0.13  Score=52.36  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=45.8

Q ss_pred             CCCccccccccccccCCCCCcc-ccchhhHHHHHHHHHHhhccCCC----CCCcchhhHHHHHHHHHHH
Q 042291          163 YDSEPQHNKFSSMLKSSGSSSK-CHNGKKRQKLKKMVNVLRGFVPG----GNELNTVGVLDEAVRHLKS  226 (241)
Q Consensus       163 ~g~kkr~k~~sS~~~ss~a~s~-c~~~kRRekI~e~~~~L~~lVPg----~~~~D~asvLdEaI~YLKs  226 (241)
                      |..|||||.+-+++..-.+..+ +-+-|-|+|+|.-|..|.+|+|=    ..+.|+.|||-=+|.||..
T Consensus         8 YAsrkRrrp~qk~rpp~~a~tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen    8 YASRKRRRPLQKQRPPPKALTKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV   76 (712)
T ss_pred             ehhhhccCCccccCCCccccccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence            5567777754344433333222 22324599999999999999996    5888999999999999863

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=91.45  E-value=0.093  Score=55.77  Aligned_cols=50  Identities=28%  Similarity=0.425  Sum_probs=43.9

Q ss_pred             chhh-HHHHHHHHHHhhccCCC-CCCcchhhHHHHHHHHHHHHHHHHHHhcC
Q 042291          187 NGKK-RQKLKKMVNVLRGFVPG-GNELNTVGVLDEAVRHLKSLKVEVQNLGV  236 (241)
Q Consensus       187 ~~kR-RekI~e~~~~L~~lVPg-~~~~D~asvLdEaI~YLKsLk~qV~~L~~  236 (241)
                      .||| |--||.++.-|+.+||| .-++.+..+|.-||+|++.|+..-+.+..
T Consensus       283 IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~  334 (953)
T KOG2588|consen  283 IEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKL  334 (953)
T ss_pred             HHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccch
Confidence            4776 88999999999999999 57889999999999999999987666643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.21
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.12
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.04
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	98.98
1a0a_A	63	BHLH, protein (phosphate system positive regulator	98.95
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	98.93
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	98.86
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	98.83
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	98.77
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	98.66
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	98.39
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.24
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.03
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	97.93
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	97.85
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	97.67
4ath_A	83	MITF, microphthalmia-associated transcription fact	97.64
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	96.57

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.21  E-value=1.4e-11  Score=92.78  Aligned_cols=48  Identities=25%  Similarity=0.358  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHhhccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHhcC
Q 042291          189 KKRQKLKKMVNVLRGFVPGG-NELNTVGVLDEAVRHLKSLKVEVQNLGV  236 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~-~~~D~asvLdEaI~YLKsLk~qV~~L~~  236 (241)
                      +||++||+.|..|+.|||++ .++|+++||.+||+||+.|+.+++.|..
T Consensus        16 rRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~   64 (82)
T 1am9_A           16 RYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ   64 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999996 8999999999999999999999999864

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.12  E-value=9.3e-11  Score=87.32  Aligned_cols=47  Identities=21%  Similarity=0.434  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHhhccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          189 KKRQKLKKMVNVLRGFVPGG-NELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~-~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      +||++||+.|..|++|||++ .++|+++||..||+|||.||.++.-|+
T Consensus        18 rRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B           18 KRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            58999999999999999984 699999999999999999999998775

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.04  E-value=2.5e-10  Score=91.42  Aligned_cols=47  Identities=21%  Similarity=0.364  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHhhccCCCCC----CcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          189 KKRQKLKKMVNVLRGFVPGGN----ELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~~----~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      +||++||++|..|+.|||++.    ++++++||+.||+||+.||.+++.|.
T Consensus        37 rRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~   87 (118)
T 4ati_A           37 RRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK   87 (118)
T ss_dssp             HHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999874    56899999999999999999999885

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.98  E-value=1.4e-10  Score=86.44  Aligned_cols=41  Identities=32%  Similarity=0.605  Sum_probs=38.3

Q ss_pred             hhHHHHHHHHHHhhccCCCC----CCcchhhHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVPGG----NELNTVGVLDEAVRHLKSLKV  229 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~----~~~D~asvLdEaI~YLKsLk~  229 (241)
                      +||++||+.|..|+.|||++    .++|+++||+.||+|||.|+.
T Consensus        19 rRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           19 RRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            58999999999999999985    799999999999999999974

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=98.95  E-value=1.1e-10  Score=84.54  Aligned_cols=44  Identities=16%  Similarity=0.326  Sum_probs=39.3

Q ss_pred             hhHHHHHHHHHHhhccCCCC-------CCcchhhHHHHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVPGG-------NELNTVGVLDEAVRHLKSLKVEVQ  232 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~-------~~~D~asvLdEaI~YLKsLk~qV~  232 (241)
                      +||++||..|..|++|||++       .+..+|+||+.||+|||.||.+|+
T Consensus        12 ~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A           12 ARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            59999999999999999965       345699999999999999998764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=98.93  E-value=1.7e-10  Score=82.69  Aligned_cols=46  Identities=17%  Similarity=0.351  Sum_probs=41.0

Q ss_pred             ch-hhHHHHHHHHHHhhccCCCCC------CcchhhHHHHHHHHHHHHHHHHH
Q 042291          187 NG-KKRQKLKKMVNVLRGFVPGGN------ELNTVGVLDEAVRHLKSLKVEVQ  232 (241)
Q Consensus       187 ~~-kRRekI~e~~~~L~~lVPg~~------~~D~asvLdEaI~YLKsLk~qV~  232 (241)
                      .| +||++||+.|..|+.|||++.      ++++++||..||+||+.||.+.+
T Consensus        12 ~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A           12 VERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            35 489999999999999999965      68999999999999999998753

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=98.86  E-value=3e-09  Score=79.47  Aligned_cols=47  Identities=23%  Similarity=0.423  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          189 KKRQKLKKMVNVLRGFVPG--GNELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg--~~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      +||++||+.|..|+.+||+  +.++++++||..||+||+.|+.+++.|.
T Consensus        12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~   60 (83)
T 1nkp_B           12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQ   60 (83)
T ss_dssp             HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999998  5889999999999999999999888774

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=98.83  E-value=3.2e-09  Score=79.04  Aligned_cols=48  Identities=21%  Similarity=0.328  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHhhccCCCC--CCcchhhHHHHHHHHHHHHHHHHHHhcC
Q 042291          189 KKRQKLKKMVNVLRGFVPGG--NELNTVGVLDEAVRHLKSLKVEVQNLGV  236 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~--~~~D~asvLdEaI~YLKsLk~qV~~L~~  236 (241)
                      +||.+||..|..|+.+||+.  .++++++||..||+||+.|+.+++.|..
T Consensus        22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~   71 (80)
T 1hlo_A           22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999984  6899999999999999999999999863

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=98.77  E-value=7.6e-09  Score=79.00  Aligned_cols=47  Identities=28%  Similarity=0.340  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHhhccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          189 KKRQKLKKMVNVLRGFVPGG---NELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~---~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      +||++||+.|..|+.+||+.   .++++++||..||+||+.|+.+.+.|.
T Consensus        16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~   65 (88)
T 1nkp_A           16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI   65 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999984   699999999999999999999987753

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=98.66  E-value=2.3e-08  Score=74.92  Aligned_cols=51  Identities=16%  Similarity=0.298  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHhhccCCC---CCCc-chhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 042291          189 KKRQKLKKMVNVLRGFVPG---GNEL-NTVGVLDEAVRHLKSLKVEVQNLGVGNM  239 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg---~~~~-D~asvLdEaI~YLKsLk~qV~~L~~~~~  239 (241)
                      +||++||+.|..|+.+||.   +.+. .++.||..||+||++||.++++++..-+
T Consensus        15 ~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~~~   69 (76)
T 3u5v_A           15 KRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPL   69 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             hhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            4899999999999999994   3444 6889999999999999999999987643

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=98.39  E-value=5.5e-07  Score=67.74  Aligned_cols=47  Identities=28%  Similarity=0.433  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHHhhccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          189 KKRQKLKKMVNVLRGFVPGG---NELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~---~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      +||..||..|..|+.+||.+   .++.+++||..||+||+.|+.+.+.|.
T Consensus        11 ~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~   60 (80)
T 1nlw_A           11 NRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV   60 (80)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            49999999999999999964   677889999999999999999998774

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.24  E-value=1e-06  Score=79.14  Aligned_cols=43  Identities=21%  Similarity=0.499  Sum_probs=39.6

Q ss_pred             hhHHHHHHHHHHhhccCCC-CCCcchhhHHHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVPG-GNELNTVGVLDEAVRHLKSLKVEV  231 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg-~~~~D~asvLdEaI~YLKsLk~qV  231 (241)
                      +||+|||+.|..|++|||+ ..++||++||..||.|||.|+...
T Consensus        22 ~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           22 KRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            5899999999999999994 679999999999999999998654

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.03  E-value=3.3e-06  Score=76.89  Aligned_cols=42  Identities=31%  Similarity=0.591  Sum_probs=38.9

Q ss_pred             hhHHHHHHHHHHhhccCC----CCCCcchhhHHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVP----GGNELNTVGVLDEAVRHLKSLKVE  230 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVP----g~~~~D~asvLdEaI~YLKsLk~q  230 (241)
                      +||+|||+.|..|+.|||    ...++||++||..||.|||.|+..
T Consensus        23 ~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           23 RRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             cchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence            589999999999999999    678999999999999999999843

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=97.93  E-value=9.1e-06  Score=59.62  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=40.2

Q ss_pred             chh-hHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHHHHHHHHHH
Q 042291          187 NGK-KRQKLKKMVNVLRGFVPG--GNELNTVGVLDEAVRHLKSLKVEV  231 (241)
Q Consensus       187 ~~k-RRekI~e~~~~L~~lVPg--~~~~D~asvLdEaI~YLKsLk~qV  231 (241)
                      .|+ |+..||+.|..|+.+||.  ++++.++.+|-.||+||..|+..+
T Consensus        19 rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           19 RERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            354 789999999999999997  578899999999999999999764

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=97.85  E-value=2e-05  Score=56.45  Aligned_cols=45  Identities=20%  Similarity=0.270  Sum_probs=40.2

Q ss_pred             hh-hHHHHHHHHHHhhccCCC---CCCcchhhHHHHHHHHHHHHHHHHH
Q 042291          188 GK-KRQKLKKMVNVLRGFVPG---GNELNTVGVLDEAVRHLKSLKVEVQ  232 (241)
Q Consensus       188 ~k-RRekI~e~~~~L~~lVPg---~~~~D~asvLdEaI~YLKsLk~qV~  232 (241)
                      |+ |+..||+.|..|+.+||.   ++++.++.+|-.||+||+.|+..++
T Consensus        10 ER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B           10 ERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            44 789999999999999996   4688999999999999999998764

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.67  E-value=4.4e-05  Score=56.56  Aligned_cols=45  Identities=24%  Similarity=0.440  Sum_probs=39.2

Q ss_pred             ccchh-hHHHHHHHHHHhhccCCC---CCCcchhhHHHHHHHHHHHHHH
Q 042291          185 CHNGK-KRQKLKKMVNVLRGFVPG---GNELNTVGVLDEAVRHLKSLKV  229 (241)
Q Consensus       185 c~~~k-RRekI~e~~~~L~~lVPg---~~~~D~asvLdEaI~YLKsLk~  229 (241)
                      |..|| |...||..|..||.+||.   .+++.|+.+|--||+||+.||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            44555 678999999999999987   4788999999999999999983

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=97.64  E-value=7.1e-05  Score=57.34  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhhccCCCC----CCcchhhHHHHHHHHHHHHHHHHHHh
Q 042291          191 RQKLKKMVNVLRGFVPGG----NELNTVGVLDEAVRHLKSLKVEVQNL  234 (241)
Q Consensus       191 RekI~e~~~~L~~lVPg~----~~~D~asvLdEaI~YLKsLk~qV~~L  234 (241)
                      |..||.++..|..|||..    .+.++.+||-.||+|++.||..++.+
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~   51 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA   51 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999974    35799999999999999998766654

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=96.57  E-value=0.005  Score=48.26  Aligned_cols=52  Identities=10%  Similarity=0.229  Sum_probs=43.0

Q ss_pred             ccchh-hHHHHHHHHHHhhccCCC---CCCcchhhHHHHHHHHHHHHHHHHHHhcC
Q 042291          185 CHNGK-KRQKLKKMVNVLRGFVPG---GNELNTVGVLDEAVRHLKSLKVEVQNLGV  236 (241)
Q Consensus       185 c~~~k-RRekI~e~~~~L~~lVPg---~~~~D~asvLdEaI~YLKsLk~qV~~L~~  236 (241)
                      |..++ |-..||+.|..||.+||.   .+++-|+.+|--||+|++.|+.-++.-..
T Consensus        30 ~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~   85 (97)
T 4aya_A           30 VDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK   85 (97)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             cccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            44443 667799999999999996   57889999999999999999998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	1e-05
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	9e-04
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	0.001

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 191 RQKLKKMVNVLRGFVPGGN-ELNTVGVLDEAVRHLKSLKVEVQNL 234
           R  +   +  L+  V G + +++  GVL +A+ ++K L+     L
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKL 45

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 9e-04
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 189 KKRQKLKKMVNVLRGFVPGGNE--LNTVGVLDEAVRHLKSLKVEVQNL 234
           K+R  +K   + LR  VP       +   +LD+A  +++ ++ +    
Sbjct: 12  KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 189 KKRQKLKKMVNVLRGFVPGGNE---LNTVGVLDEAVRHLKSLKVEVQNL 234
           ++R +LK+    LR  +P          V +L +A  ++ S++ E Q L
Sbjct: 16  QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKL 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	98.97
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	98.93
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	98.75
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	98.57

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-12  Score=91.62  Aligned_cols=46  Identities=24%  Similarity=0.369  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHhcC
Q 042291          191 RQKLKKMVNVLRGFVPGG-NELNTVGVLDEAVRHLKSLKVEVQNLGV  236 (241)
Q Consensus       191 RekI~e~~~~L~~lVPg~-~~~D~asvLdEaI~YLKsLk~qV~~L~~  236 (241)
                      |++||++|..|+.||||+ .++|+++||.+||+||+.||.+++.|..
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~   47 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ   47 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999996 5899999999999999999999999864

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.7e-10  Score=82.41  Aligned_cols=44  Identities=18%  Similarity=0.364  Sum_probs=40.5

Q ss_pred             hhHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVPG--GNELNTVGVLDEAVRHLKSLKVEVQ  232 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg--~~~~D~asvLdEaI~YLKsLk~qV~  232 (241)
                      +||++||+.|..|++|||+  +.++++++||+.||+||+.|+.+|+
T Consensus        22 ~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          22 RRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            4899999999999999999  4678999999999999999998765

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=1.9e-10  Score=80.76  Aligned_cols=43  Identities=16%  Similarity=0.341  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHHhhccCCC-------CCCcchhhHHHHHHHHHHHHHHHH
Q 042291          189 KKRQKLKKMVNVLRGFVPG-------GNELNTVGVLDEAVRHLKSLKVEV  231 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg-------~~~~D~asvLdEaI~YLKsLk~qV  231 (241)
                      +||++||+.|..|+.|||+       +.++++++||+.||+||+.||.+|
T Consensus        12 ~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_          12 ARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            4999999999999999994       578899999999999999999875

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=6e-10  Score=81.22  Aligned_cols=47  Identities=26%  Similarity=0.376  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHHhhccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          189 KKRQKLKKMVNVLRGFVPGG-NELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~-~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      +||++||+.|..|++|||+. .++++++||..||+||+.|+.+++.|.
T Consensus        16 ~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~   63 (80)
T d1am9a_          16 RYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLK   63 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999995 588999999999999999999999885

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.2e-09  Score=77.58  Aligned_cols=47  Identities=28%  Similarity=0.433  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHhhccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          189 KKRQKLKKMVNVLRGFVPGG---NELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg~---~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      +||++||+.|..|+++||++   .++++++||..||+||+.|+.+++.|.
T Consensus        11 ~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~   60 (79)
T d1nlwa_          11 NRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV   60 (79)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            49999999999999999974   468999999999999999999998874

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.4e-09  Score=78.03  Aligned_cols=47  Identities=23%  Similarity=0.423  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          189 KKRQKLKKMVNVLRGFVPG--GNELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       189 kRRekI~e~~~~L~~lVPg--~~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      +||++||+.|..|+++||+  +.++++++||..||+||+.|+.+++.|.
T Consensus        12 ~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~   60 (83)
T d1nkpb_          12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQ   60 (83)
T ss_dssp             HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4999999999999999997  5789999999999999999999988774

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.7e-09  Score=77.25  Aligned_cols=49  Identities=27%  Similarity=0.308  Sum_probs=44.0

Q ss_pred             chh-hHHHHHHHHHHhhccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291          187 NGK-KRQKLKKMVNVLRGFVPGG---NELNTVGVLDEAVRHLKSLKVEVQNLG  235 (241)
Q Consensus       187 ~~k-RRekI~e~~~~L~~lVPg~---~~~D~asvLdEaI~YLKsLk~qV~~L~  235 (241)
                      .|+ ||++||+.|..|+.+||+.   .++++++||..||+||+.|+.+++.|.
T Consensus        13 ~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~   65 (88)
T d1nkpa_          13 LERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI   65 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            354 8999999999999999974   568999999999999999999998874

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.8e-09  Score=72.72  Aligned_cols=46  Identities=17%  Similarity=0.346  Sum_probs=40.0

Q ss_pred             cchh-hHHHHHHHHHHhhccCCCC------CCcchhhHHHHHHHHHHHHHHHH
Q 042291          186 HNGK-KRQKLKKMVNVLRGFVPGG------NELNTVGVLDEAVRHLKSLKVEV  231 (241)
Q Consensus       186 ~~~k-RRekI~e~~~~L~~lVPg~------~~~D~asvLdEaI~YLKsLk~qV  231 (241)
                      ..|+ ||++||..|..|++|||..      .+++++.||..||+||+.||.+.
T Consensus        11 ~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_          11 EVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            3454 8999999999999999963      38899999999999999998653