Citrus Sinensis ID: 042344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MIGSRPEDAFTTLDGGNSAKVGQNRFTMFFFIFWGSDDEDDDEDDDSSSNPNPGSQSDSLNPRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKTIRQIS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEcHHHHHHHHHcccccccccccccEEEEcHHHHHccHHHHHHHccccccccccEEEcccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccHHHccccccHHccccccccccHHHHHHHccHHHHHHHccccccccccccccccccccccccHcccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
migsrpedafttldggnsakvgqnRFTMFFFIFwgsddedddedddsssnpnpgsqsdslnprsahksskndsrrekSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKthtadtrkpafrwLGVNRLEIgladslnldesrkrtfgtdvtnisfkrkrmdtsingdisQSIKMEKQMKVDDLVRvvdgsnsenyvnqgprsyqfgpfapesvpevntsknnvkgahdwesltskycpqyhnQALRDLFSHYMEAWQSWYTEVAGKTIRQIS
Flexible Loop (DISEMBL)
migsrpedafttldggnsakvgqnRFTMFFFIFWGSDDEDDDEDDDSSSNpnpgsqsdslnprsahksskndsrreksLGLLTQNFVRLFVCSNVDMITLDEVAKLLlgdahntsvmrtkvrRLYDIANVLSSMNLIEKthtadtrkpafrwLGVNRLEIGLadslnldesrkrtfgtdvtnisfkrkrmdtsingdisqsikmekqmkVDDLVRVVDGSnsenyvnqgprsYQFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKTIRQIS
Low Complexity Region (SEG)
MIGSRPEDAFTTLDGGNSAKVGQNRFTMFFFIFWgsddedddedddsssnpnpgsqsdsLNPRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKTIRQIS
Disordered region (IsUnstruct)
********************VGQNRFTMFFFIFWG*******************************************LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIGLADSLNLD*****TFGTDVTNI************************************************************************AHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKT*****
Disordered Region (DISOPRED)
********************************************************************************LLTQNFVRLFVCSNVDMITLDEVAKLLLGDAH******TKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLE******************************************************************************************************LTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVA*K******
Disordered Region (DISEMBL)
********AFTTLDGGNSAKVGQNRFTMFFFIFWGSDD**************************************KSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKTIRQIS
Disordered Region (DISPRO)
******EDAFTTLDGGNSAKVGQNRFTMFFFIFWG**************************************RREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIGL**************GTDVTNISFKR***D****GD*SQSIK**************************************************KGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGK******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGSRPEDAFTTLDGGNSAKVGQNRFTMFFFIFWGSDDEDDDEDDDSSSNPNPGSQSDSLNPRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKTIRQIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q8LSZ4	403	E2F transcription factor-	yes	no	0.794	0.595	0.521	1e-60
Q8RWL0	354	E2F transcription factor-	no	no	0.698	0.596	0.466	2e-46
Q9LFQ9	359	E2F transcription factor-	no	no	0.741	0.623	0.385	2e-36
D4A4D7	902	Transcription factor E2F7	yes	no	0.374	0.125	0.424	3e-19
Q6S7F2	904	Transcription factor E2F7	yes	no	0.294	0.098	0.489	5e-19
Q96AV8	911	Transcription factor E2F7	yes	no	0.288	0.095	0.510	8e-19
F1QZ88	917	Transcription factor E2F8	yes	no	0.291	0.095	0.468	3e-18
F6YVB9	862	Transcription factor E2F7	yes	no	0.288	0.100	0.510	3e-18
E1BE02	911	Transcription factor E2F7	yes	no	0.307	0.102	0.469	4e-18
F1LMN3	860	Transcription factor E2F8	no	no	0.291	0.102	0.457	6e-18

>sp|Q8LSZ4|E2FE_ARATH E2F transcription factor-like E2FE OS=Arabidopsis thaliana GN=E2FE PE=2 SV=1

 Score =  233 bits (595), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/251 (52%), Positives = 172/251 (68%), Gaps = 11/251 (4%)

Query: 51  PNPGSQSDSLNPRSAHKSS---KNDSRREKSLGLLTQNFVRLFVCSN-VDMITLDEVAKL 106
           P+  SQ+DS  P S  +SS   K D+RREKSLGLLTQNF++LF+CS  + +I+LD+ AKL
Sbjct: 143 PHSSSQTDSSKPGSLPQSSDPSKIDNRREKSLGLLTQNFIKLFICSEAIRIISLDDAAKL 202

Query: 107 LLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVN-RLEIGLADS 165
           LLGDAHNTS+MRTKVRRLYDIANVLSSMNLIEKTHT D+RKPAF+WLG N      L+  
Sbjct: 203 LLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTLDSRKPAFKWLGYNGEPTFTLSSD 262

Query: 166 LNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQ-SIKMEKQMKVDDLVRVVDGSNSEN 224
           L   ESRKR FGTD+TN++ KR +  +S   + ++  +KM+K    +         +   
Sbjct: 263 LLQLESRKRAFGTDITNVNVKRSKSSSSSQENATERRLKMKKHSTPESSYNKSFDVHESR 322

Query: 225 YVNQGPRSYQFGPFAP--ESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHY 282
           + ++G   Y FGPFAP   + P     ++N + A D E+L S Y P Y NQ L+DLFSHY
Sbjct: 323 HGSRG--GYHFGPFAPGTGTYPTAGL-EDNSRRAFDVENLDSDYRPSYQNQVLKDLFSHY 379

Query: 283 MEAWQSWYTEV 293
           M+AW++W++EV
Sbjct: 380 MDAWKTWFSEV 390

Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWL0|E2FF_ARATH E2F transcription factor-like E2FF OS=Arabidopsis thaliana GN=E2FF PE=2 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/227 (46%), Positives = 133/227 (58%), Gaps = 16/227 (7%)

Query: 68  SSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDI 127
           SSK D ++EKSL LL QNFV++F+CS+ D+ITLD  AK LL D+ ++  MRTKVRRLYDI
Sbjct: 139 SSKMDQKKEKSLWLLAQNFVKMFLCSDDDLITLDSAAKALLSDSPDSVHMRTKVRRLYDI 198

Query: 128 ANVLSSMNLIEKTHTADTRKPAFRWLGVNRL-EIGLADSLNLDESRKRTFGTDVTNISFK 186
           ANV +SMNLIEKTH   TRKPA+RWLG   + E GL  SL      KR FGT++TN+  K
Sbjct: 199 ANVFASMNLIEKTHIPVTRKPAYRWLGSKSIAERGL--SLFNSGEPKRVFGTEITNLRAK 256

Query: 187 RKRMDTSINGDISQSIKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEV 246
           R +   S    I + I  +K           D  N+E         Y FGPF+P    + 
Sbjct: 257 RNKTYCS---SIRKQIGYKKH----------DEENTEQESKPAASKYVFGPFSPIGASKT 303

Query: 247 NTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEV 293
           N  K       + E+L S Y PQY NQ +  L  H+ EAW+ WY EV
Sbjct: 304 NNDKVGKGRLLEIEALASTYQPQYCNQEITGLLGHFTEAWKKWYAEV 350

Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Does not bind retinoblastoma-related proteins. Acts as a growth regulator but is not associated with changes in the expression of cell cycle marker genes or in nuclear ploidy levels. Has no effect on cell proliferation, but may repress cell wall biosynthesis genes during cell elongation in differentiated cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFQ9|E2FD_ARATH E2F transcription factor-like E2FD OS=Arabidopsis thaliana GN=E2FD PE=1 SV=1

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/254 (38%), Positives = 143/254 (56%), Gaps = 30/254 (11%)

Query: 54  GSQSDSLNP--RSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDA 111
           G +S  L+P  +    S + D+R+E++L LL QNFV+LF+CS+ D++T D   K LL ++
Sbjct: 116 GEESFMLSPDDQEFSPSPRPDNRKERTLWLLAQNFVKLFLCSDDDLVTFDSATKALLNES 175

Query: 112 HNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGV-----NRLEIGLADSL 166
            + + MR KVRRLYDIANV SSM LIEKTH  +T+KPA+RWLG      NR   G A   
Sbjct: 176 QDMN-MRKKVRRLYDIANVFSSMKLIEKTHVPETKKPAYRWLGSKTIFENRFIDGSASLC 234

Query: 167 NLDESRKRTFGTDVTNISFKRKRM-----DTSINGDISQSIKMEKQMKVDDLVRVVDGSN 221
           + +  +KR FGT++TN++ KR +      D+  NG+ + SI + KQ + DD         
Sbjct: 235 DRNVPKKRAFGTELTNVNAKRNKSGCSKEDSKRNGNQNTSIVI-KQEQCDD--------- 284

Query: 222 SENYVNQGPRSYQFGPFAPESVPEVNTSKNNVKGAHDW---ESLTSKYCPQYHNQALRDL 278
               V    +++  G   P    E N   NN++        E+L++ Y P Y N  L  L
Sbjct: 285 ----VKPDVKNFASGSSTPAGTSESNDMGNNIRPRGRLGVIEALSTLYQPSYCNPELLGL 340

Query: 279 FSHYMEAWQSWYTE 292
           F+HY E ++S+  E
Sbjct: 341 FAHYNETFRSYQEE 354

Inhibitor of E2F-dependent regulation of gene expression. Binds specifically the E2 recognition site as a monomer without interacting with DP proteins. May be up-regulating E2FA and down-regulating repressors of cell cycle progression. Promotes cell proliferation and represses cell elongation. Regulated by proteolysis via an ubiquitin-proteasome pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|D4A4D7|E2F7_RAT Transcription factor E2F7 OS=Rattus norvegicus GN=E2f7 PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 83/125 (66%), Gaps = 12/125 (9%)

Query: 64  SAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNT---SVMRTK 120
           S + SS  +SR++KSL +++Q FV LF+ S   ++TLD  AK+L+ ++ +T   S  +TK
Sbjct: 273 SDYPSSSANSRKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDTPDHSKFKTK 332

Query: 121 VRRLYDIANVLSSMNLIEKTHTADT--RKPAFRWLG------VNRLEIGLADSLNLDESR 172
           VRRLYDIANVL+S+ LI+K H  +   RKPAF+W+G      ++   + ++ S+ L E +
Sbjct: 333 VRRLYDIANVLTSLALIKKVHVTEERGRKPAFKWIGPVDFSSIDEELLDVSASV-LPELK 391

Query: 173 KRTFG 177
           K T+G
Sbjct: 392 KETYG 396

Atypical E2F transcription factor that participates to various processes such as angiogenesis, polyploidization of specialized cells and DNA damage response. Mainly acts as a transcription repressor that binds DNA independently of DP proteins and specifically recognizes the E2 recognition site 5'-TTTC[CG]CGC-3'. Directly represses transcription of classical E2F transcription factors such as E2F1. Acts as a regulator of S-phase by recognizing and binding the E2-related site 5'-TTCCCGCC-3' and mediating repression of G1/S-regulated genes. Plays a key role in polyploidization of cells in placenta and liver by regulating the endocycle, probably by repressing genes promoting cytokinesis and antagonizing action of classical E2F proteins (E2F1, E2F2 and/or E2F3). Required for placental development by promoting polyploidization of trophoblast giant cells. Also involved in DNA damage response: up-regulated by p53/TP53 following genotoxic stress and acts as a downstream effector of p53/TP53-dependent repression by mediating repression of indirect p53/TP53 target genes involved in DNA replication. Acts as a promoter of sprouting angiogenesis, possibly by acting as a transcription activator: associates with HIF1A, recognizes and binds the VEGFA promoter, which is different from canonical E2 recognition site, and activates expression of the VEGFA gene. Acts as a negative regulator of keratinocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q6S7F2|E2F7_MOUSE Transcription factor E2F7 OS=Mus musculus GN=E2f7 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 68/94 (72%), Gaps = 5/94 (5%)

Query: 66  HKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNT---SVMRTKVR 122
           + SS  +SR++KSL +++Q FV LF+ S   ++TLD  AK+L+ ++ +T   S  +TKVR
Sbjct: 275 YPSSSANSRKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDTPDHSKFKTKVR 334

Query: 123 RLYDIANVLSSMNLIEKTHTADT--RKPAFRWLG 154
           RLYDIANVL+S+ LI+K H  +   RKPAF+W+G
Sbjct: 335 RLYDIANVLTSLALIKKVHVTEERGRKPAFKWIG 368

Along with E2F8, inhibitor of E2F-dependent transcription that is important for embryonic development and for the control of the E2f1-Tp53 apoptotic pathway. Directly represses E2F1 transcription. Binds DNA independently of DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3'. Appears to regulate a subset of E2F-dependent genes whose products are required for normal cell cycle progession.

Mus musculus (taxid: 10090)

>sp|Q96AV8|E2F7_HUMAN Transcription factor E2F7 OS=Homo sapiens GN=E2F7 PE=1 SV=3

 Score = 94.4 bits (233), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 5/92 (5%)

Query: 68  SSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLL---GDAHNTSVMRTKVRRL 124
           SS  +SR++KSL +++Q FV LF+ S   ++TLD  AK+L+    DA + S  +TKVRRL
Sbjct: 276 SSSANSRKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDAPDHSKFKTKVRRL 335

Query: 125 YDIANVLSSMNLIEKTHTADT--RKPAFRWLG 154
           YDIANVL+S+ LI+K H  +   RKPAF+W+G
Sbjct: 336 YDIANVLTSLALIKKVHVTEERGRKPAFKWIG 367

Along with E2F8, inhibitor of E2F-dependent transcription that is important for the control of the E2F1-TP53 apoptotic pathway. Directly represses E2F1 transcription (By similarity). Binds DNA independently of DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3'. Appears to regulate a subset of E2F-dependent genes whose products are required for normal cell cycle progession.

Homo sapiens (taxid: 9606)

>sp|F1QZ88|E2F8_DANRE Transcription factor E2F8 OS=Danio rerio GN=e2f8 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 68/94 (72%), Gaps = 6/94 (6%)

Query: 67  KSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAH----NTSVMRTKVR 122
           K++  +SR++KSL +++Q FV LF+ S+  +++LD  AK+L+G+ H    + +  +TK+R
Sbjct: 266 KAASANSRKDKSLRVMSQKFVMLFLVSSPPVVSLDVAAKILIGEDHVVDQDKNKFKTKIR 325

Query: 123 RLYDIANVLSSMNLIEKTHTAD--TRKPAFRWLG 154
           RLYDIANVLSS+ LI+K H  +   RKPAF+W G
Sbjct: 326 RLYDIANVLSSLELIKKVHVTEDKGRKPAFKWTG 359

Atypical E2F transcription factor that participates to various processes such as angiogenesis and polyploidization of specialized cells. Mainly acts as a transcription repressor that binds DNA independently of DP proteins and specifically recognizes the E2 recognition site 5'-TTTC[CG]CGC-3'. Directly represses transcription of classical E2F transcription factors such as e2f1. Acts as a regulator of S-phase by recognizing and binding the E2-related site 5'-TTCCCGCC-3' and mediating repression of G1/S-regulated genes (By similarity). Acts as a promoter of sprouting angiogenesis, possibly by acting as a transcription activator and promoting expression of vegfa.

Danio rerio (taxid: 7955)

>sp|F6YVB9|E2F7_XENTR Transcription factor E2F7 OS=Xenopus tropicalis GN=e2f7 PE=3 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 65/92 (70%), Gaps = 5/92 (5%)

Query: 68  SSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLL---GDAHNTSVMRTKVRRL 124
           S  + SR++KSL +++Q FV LF+ S   +ITL+  AK+L+    DA + S  +TKVRRL
Sbjct: 273 SVSSSSRKDKSLRIMSQKFVMLFLVSTTKIITLEIAAKILIEESQDAADHSKFKTKVRRL 332

Query: 125 YDIANVLSSMNLIEKTHTADT--RKPAFRWLG 154
           YDIANVL+S+ LI+K H  D   RKPAF+W+G
Sbjct: 333 YDIANVLTSLGLIKKVHVTDERGRKPAFKWIG 364

Atypical E2F transcription factor that participates to various processes such as angiogenesis and polyploidization of specialized cells. Mainly acts as a transcription repressor that binds DNA independently of DP proteins and specifically recognizes the E2 recognition site 5'-TTTC[CG]CGC-3'. Directly represses transcription of classical E2F transcription factors such as e2f1. Acts as a regulator of S-phase by recognizing and binding the E2-related site 5'-TTCCCGCC-3' and mediating repression of G1/S-regulated genes. Acts as a promoter of sprouting angiogenesis, possibly by acting as a transcription activator.

Xenopus tropicalis (taxid: 8364)

>sp|E1BE02|E2F7_BOVIN Transcription factor E2F7 OS=Bos taurus GN=E2F7 PE=3 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 67/98 (68%), Gaps = 5/98 (5%)

Query: 62  PRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNT---SVMR 118
           P     SS  +SR++KSL +++Q FV LF+ S   ++TLD  AK+L+ ++ +    S  +
Sbjct: 269 PEPDCPSSSANSRKDKSLKIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDIPDHSKFK 328

Query: 119 TKVRRLYDIANVLSSMNLIEKTHTAD--TRKPAFRWLG 154
           TKVRRLYDIANVL+S+ LI+K H  +   RKPAF+W+G
Sbjct: 329 TKVRRLYDIANVLTSLMLIKKVHVTEDRGRKPAFKWIG 366

Atypical E2F transcription factor that participates to various processes such as angiogenesis, polyploidization of specialized cells and DNA damage response. Mainly acts as a transcription repressor that binds DNA independently of DP proteins and specifically recognizes the E2 recognition site 5'-TTTC[CG]CGC-3'. Directly represses transcription of classical E2F transcription factors such as E2F1. Acts as a regulator of S-phase by recognizing and binding the E2-related site 5'-TTCCCGCC-3' and mediating repression of G1/S-regulated genes. Plays a key role in polyploidization of cells in placenta and liver by regulating the endocycle, probably by repressing genes promoting cytokinesis and antagonizing action of classical E2F proteins (E2F1, E2F2 and/or E2F3). Required for placental development by promoting polyploidization of trophoblast giant cells. Also involved in DNA damage response: up-regulated by p53/TP53 following genotoxic stress and acts as a downstream effector of p53/TP53-dependent repression by mediating repression of indirect p53/TP53 target genes involved in DNA replication. Acts as a promoter of sprouting angiogenesis, possibly by acting as a transcription activator: associates with HIF1A, recognizes and binds the VEGFA promoter, which is different from canonical E2 recognition site, and activates expression of the VEGFA gene. Acts as a negative regulator of keratinocyte differentiation.

Bos taurus (taxid: 9913)

>sp|F1LMN3|E2F8_RAT Transcription factor E2F8 OS=Rattus norvegicus GN=E2f8 PE=2 SV=2

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 68/94 (72%), Gaps = 6/94 (6%)

Query: 67  KSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAH----NTSVMRTKVR 122
           +++  +SR++KSL +++Q FV LF+ S   +++L+  AK+L+G+ H    + S  +TK+R
Sbjct: 254 RAASANSRKDKSLRVMSQKFVMLFLVSTPQIVSLEIAAKILIGEDHVEDLDKSKFKTKIR 313

Query: 123 RLYDIANVLSSMNLIEKTHTADT--RKPAFRWLG 154
           RLYDIANVLSS++LI+K H  +   RKPAF+W G
Sbjct: 314 RLYDIANVLSSLDLIKKVHVTEERGRKPAFKWTG 347

Atypical E2F transcription factor that participates to various processes such as angiogenesis and polyploidization of specialized cells. Mainly acts as a transcription repressor that binds DNA independently of DP proteins and specifically recognizes the E2 recognition site 5'-TTTC[CG]CGC-3'. Directly represses transcription of classical E2F transcription factors such as E2F1: component of a feedback loop in S phase by repressing the expression of E2F1, thereby preventing p53/TP53-dependent apoptosis. Plays a key role in polyploidization of cells in placenta and liver by regulating the endocycle, probably by repressing genes promoting cytokinesis and antagonizing action of classical E2F proteins (E2F1, E2F2 and/or E2F3). Required for placental development by promoting polyploidization of trophoblast giant cells. Acts as a promoter of sprouting angiogenesis, possibly by acting as a transcription activator: associates with HIF1A, recognizes and binds the VEGFA promoter, which is different from canonical E2 recognition site, and activates expression of the VEGFA gene.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
225457156	382	PREDICTED: E2F transcription factor-like	0.887	0.701	0.561	4e-84
255540801	389	E2F, putative [Ricinus communis] gi|2235	0.831	0.645	0.620	6e-83
356512910	381	PREDICTED: E2F transcription factor-like	0.867	0.687	0.607	8e-83
224133412	384	repressor, antagonist of e2f-dp complex	0.834	0.656	0.614	2e-82
224119208	385	repressor, antagonist of e2f-dp complex	0.837	0.657	0.610	3e-82
297733848	815	unnamed protein product [Vitis vinifera]	0.884	0.327	0.553	5e-82
356562773	380	PREDICTED: E2F transcription factor-like	0.864	0.686	0.601	1e-80
357477293	385	E2F transcription factor-like protein [M	0.850	0.667	0.564	1e-80
449469501	381	PREDICTED: E2F transcription factor-like	0.864	0.685	0.578	1e-78
449487782	381	PREDICTED: E2F transcription factor-like	0.864	0.685	0.578	1e-78

>gi|225457156|ref|XP_002280411.1| PREDICTED: E2F transcription factor-like E2FE-like [Vitis vinifera]

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 170/303 (56%), Positives = 212/303 (69%), Gaps = 35/303 (11%)

Query: 10  FTTLDGGNSAKVGQNRFTMFFFIFWGSDDEDDDEDDDSSSNPNPGSQSDSLNPRSAHKSS 69
           F T D  NSAK+              SDDED+       SNPN GSQ D  NP S  K S
Sbjct: 105 FHTFDSNNSAKI--------------SDDEDE-----RFSNPNTGSQQDKSNPSSVLKPS 145

Query: 70  K-------NDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVR 122
           K        D+RREKSLGLLTQNFV+LF+CSNVD+I+L+E A++LLGD  N+S+MRTKVR
Sbjct: 146 KLNLNVFFTDNRREKSLGLLTQNFVKLFLCSNVDLISLEEAARILLGDGQNSSIMRTKVR 205

Query: 123 RLYDIANVLSSMNLIEKTHTADTRKPAFRWLGV-NRLEIGLADSLNLDESRKRTFGTDVT 181
           RLYDIANVLSSMNLIEKT+  + RKPAFRWLG+  + E G    LNL+ES+KRTFGT++T
Sbjct: 206 RLYDIANVLSSMNLIEKTNQTENRKPAFRWLGMRGKSENGSLSVLNLNESKKRTFGTEIT 265

Query: 182 NISFKRKRMDTSINGDISQSIKMEKQMKV--DDLVRVVDGSNSENYVNQGPRSYQFGPFA 239
           NISFKR +M +S+ G+ +Q+ KM+ QM+V  ++L   ++ S+ E    Q  +SYQFGPFA
Sbjct: 266 NISFKRNKMASSVEGNSNQNTKMQWQMQVKHENLENGIERSDFEKGPKQSSKSYQFGPFA 325

Query: 240 PESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKTIR 299
           P SV      ++ V+   DWESL S Y PQYH+QALRDLF+HYMEAW++WY+EVAGK   
Sbjct: 326 PVSV------QDTVRQVRDWESLASTYRPQYHSQALRDLFAHYMEAWKTWYSEVAGKEPI 379

Query: 300 QIS 302
           QIS
Sbjct: 380 QIS 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540801|ref|XP_002511465.1| E2F, putative [Ricinus communis] gi|223550580|gb|EEF52067.1| E2F, putative [Ricinus communis]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 162/261 (62%), Positives = 199/261 (76%), Gaps = 10/261 (3%)

Query: 48  SSNPNPGSQSDSLNPRSAHKS---SKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVA 104
            SNPN GSQ+    P    KS   S+ D+R+EKSLGLLTQNFV+LF+CS  D+I+LDE A
Sbjct: 133 DSNPNTGSQNSI--PSGISKSTAASRFDNRKEKSLGLLTQNFVKLFLCSKADLISLDEAA 190

Query: 105 KLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVN-RLEIGLA 163
           KLLLGDAHN+S+MRTKVRRLYDIANVLSS+ LIEKTHTA++RKPAFRWLG+  + E G A
Sbjct: 191 KLLLGDAHNSSIMRTKVRRLYDIANVLSSLKLIEKTHTAESRKPAFRWLGLRVKSESGSA 250

Query: 164 DSLNLDESRKRTFGTDVTNISFKRKRMD-TSINGDISQSIKMEKQMKVDDLVRVVDGSNS 222
           D+L   ESRKR FG DVTNI  KR ++D +S + D S+S+KM  Q+KV+D++ + D S+ 
Sbjct: 251 DALA--ESRKRRFGVDVTNICIKRNKVDGSSADADKSESLKMHGQIKVEDVLTIADRSSV 308

Query: 223 ENYVNQGPRSYQFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHY 282
                QG +SYQFGPFAP +V ++  S+N     HDWESL + Y PQYHNQALR+LF+HY
Sbjct: 309 GQDAQQGSKSYQFGPFAPVTVAKLGDSENKQTPTHDWESLAATYRPQYHNQALRELFAHY 368

Query: 283 MEAWQSWYTEVAGKT-IRQIS 302
           MEAW+SWYTEVAGK  I QIS
Sbjct: 369 MEAWKSWYTEVAGKKPIEQIS 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512910|ref|XP_003525157.1| PREDICTED: E2F transcription factor-like E2FE-like [Glycine max]

 Score =  313 bits (801), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 164/270 (60%), Positives = 201/270 (74%), Gaps = 8/270 (2%)

Query: 36  SDDEDDDEDDDSSSNPNPGSQSDSLNPRSAH--KSSKNDSRREKSLGLLTQNFVRLFVCS 93
           SDDEDD+E   + SNP  GSQSD LNP S+   KS KN++RREKSL LLTQNFV+LFVCS
Sbjct: 115 SDDEDDEE---TLSNPATGSQSDKLNPNSSTLTKSLKNENRREKSLALLTQNFVKLFVCS 171

Query: 94  NVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWL 153
           NV++I+LDE AKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHT DTRKPAFRWL
Sbjct: 172 NVELISLDEAAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWL 231

Query: 154 GV-NRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVDD 212
           G   +         NL+ESRKR FG+D+TNISF+R  ++   NGD + + K + +M+   
Sbjct: 232 GSEGKTWNETLHKSNLNESRKRAFGSDITNISFERNNVELFTNGDSNPNPK-KPRMEYGS 290

Query: 213 LVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEVNTSK-NNVKGAHDWESLTSKYCPQYH 271
            +   D +N +    Q  ++YQFGPFAP  VP+V  S+ NN+K  H W+SL +   PQY 
Sbjct: 291 GLGQADENNLKQGTKQASKNYQFGPFAPACVPKVGASENNNLKQVHGWDSLATANSPQYQ 350

Query: 272 NQALRDLFSHYMEAWQSWYTEVAGKTIRQI 301
           N+ALR+L+SHYMEAW+SWY+E+AGK   QI
Sbjct: 351 NEALRELYSHYMEAWKSWYSEIAGKRSLQI 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133412|ref|XP_002321561.1| repressor, antagonist of e2f-dp complex [Populus trichocarpa] gi|222868557|gb|EEF05688.1| repressor, antagonist of e2f-dp complex [Populus trichocarpa]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/254 (61%), Positives = 192/254 (75%), Gaps = 2/254 (0%)

Query: 50  NPNPGSQSDSLNPRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLG 109
           NPN GSQ+++ +   +   S++D RREKSLGLLTQNFV+LFVCSN ++I+LDE AKLLLG
Sbjct: 132 NPNTGSQNENSSIIKSMAVSRSDHRREKSLGLLTQNFVKLFVCSNANLISLDESAKLLLG 191

Query: 110 DAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGV-NRLEIGLADSLNL 168
           D HN S+MRTKVRRLYDIANVLSS+ LIEKTHTADTRKPAFRWLG   + E G  D L  
Sbjct: 192 DGHNLSIMRTKVRRLYDIANVLSSLKLIEKTHTADTRKPAFRWLGFRGKSENGSGDPLAP 251

Query: 169 DESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVDDLVRVVDGSNSENYVNQ 228
            ESRKRTFG D+TN  FKR +MD+S++GD SQ++KM+ Q+K +++V V +  N    + Q
Sbjct: 252 FESRKRTFGADITNTCFKRNKMDSSVDGDKSQNLKMQ-QIKDENMVTVAERGNFGQDLQQ 310

Query: 229 GPRSYQFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQS 288
              S+QFGPFAP SV +    ++NV   +DWE L+S + PQYHNQALRDLFSHY EAW+ 
Sbjct: 311 KSGSFQFGPFAPVSVAKAGNPEDNVTRIYDWEGLSSTFRPQYHNQALRDLFSHYTEAWKL 370

Query: 289 WYTEVAGKTIRQIS 302
           WYTEVAGK    IS
Sbjct: 371 WYTEVAGKKPLHIS 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119208|ref|XP_002318015.1| repressor, antagonist of e2f-dp complex [Populus trichocarpa] gi|222858688|gb|EEE96235.1| repressor, antagonist of e2f-dp complex [Populus trichocarpa]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/254 (61%), Positives = 190/254 (74%), Gaps = 1/254 (0%)

Query: 50  NPNPGSQSDSLNPRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLG 109
           NPN GSQ+++     +  +S+ D RREKSLGLLTQNFV+LFVC N ++I+LDE AKLLLG
Sbjct: 132 NPNTGSQNENSGIIKSTAASRFDHRREKSLGLLTQNFVKLFVCFNANLISLDESAKLLLG 191

Query: 110 DAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGV-NRLEIGLADSLNL 168
           D H +S+MRTKVRRLYDIANVLSS+ LIEKTHTADTRKPAFRWLG+  + E G  D L  
Sbjct: 192 DGHKSSIMRTKVRRLYDIANVLSSLKLIEKTHTADTRKPAFRWLGLRGKSENGSGDPLAP 251

Query: 169 DESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVDDLVRVVDGSNSENYVNQ 228
            ESRKRTFG DVTNI  KR + D+S++GD S+++KM+KQ+K +++V VV   N +    Q
Sbjct: 252 FESRKRTFGADVTNICSKRNKTDSSVDGDKSKNLKMQKQIKDENIVTVVQRGNFDQDSQQ 311

Query: 229 GPRSYQFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQS 288
              S+QFGPFAP S+  V  S+  V   +DWE L+S + PQYHNQALRDLF HY EAW+S
Sbjct: 312 NSGSFQFGPFAPVSIARVGNSEEKVTQIYDWEGLSSTFRPQYHNQALRDLFFHYTEAWKS 371

Query: 289 WYTEVAGKTIRQIS 302
           WYTEVAGK    IS
Sbjct: 372 WYTEVAGKKPLHIS 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 165/298 (55%), Positives = 209/298 (70%), Gaps = 31/298 (10%)

Query: 10  FTTLDGGNSAKVGQNRFTMFFFIFWGSDDEDDDEDDDSSSNPNPGSQSDSLNPRSAHKSS 69
           F T D  NSAKV                    D++D+  SNPN GSQ D  NP S    +
Sbjct: 544 FHTFDSNNSAKV--------------------DDEDERFSNPNTGSQQDKSNPSSKLNLN 583

Query: 70  K--NDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDI 127
               D+RREKSLGLLTQNFV+LF+CSNVD+I+L+E A++LLGD  N+S+MRTKVRRLYDI
Sbjct: 584 VFFTDNRREKSLGLLTQNFVKLFLCSNVDLISLEEAARILLGDGQNSSIMRTKVRRLYDI 643

Query: 128 ANVLSSMNLIEKTHTADTRKPAFRWLGV-NRLEIGLADSLNLDESRKRTFGTDVTNISFK 186
           ANVLSSMNLIEKT+  + RKPAFRWLG+  + E G    LNL+ES+KRTFGT++TNISFK
Sbjct: 644 ANVLSSMNLIEKTNQTENRKPAFRWLGMRGKSENGSLSVLNLNESKKRTFGTEITNISFK 703

Query: 187 RKRMDTSINGDISQSIKMEKQMKV--DDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVP 244
           R +M +S+ G+ +Q+ KM+ QM+V  ++L   ++ S+ E    Q  +SYQFGPFAP SV 
Sbjct: 704 RNKMASSVEGNSNQNTKMQWQMQVKHENLENGIERSDFEKGPKQSSKSYQFGPFAPVSV- 762

Query: 245 EVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKTIRQIS 302
                ++ V+   DWESL S Y PQYH+QALRDLF+HYMEAW++WY+EVAGK   QIS
Sbjct: 763 -----QDTVRQVRDWESLASTYRPQYHSQALRDLFAHYMEAWKTWYSEVAGKEPIQIS 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562773|ref|XP_003549643.1| PREDICTED: E2F transcription factor-like E2FE-like [Glycine max]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 163/271 (60%), Positives = 203/271 (74%), Gaps = 10/271 (3%)

Query: 36  SDDEDDDEDDDSSSNPNP-GSQSDSLNPRSA-HKSSKNDSRREKSLGLLTQNFVRLFVCS 93
           SDDEDD+E   + SNP   GSQSD LNP S   K  KN++RREKSL LLTQNFV+LFVCS
Sbjct: 114 SDDEDDEE---TQSNPAATGSQSDKLNPNSTLPKPLKNENRREKSLALLTQNFVKLFVCS 170

Query: 94  NVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWL 153
           NV++I+LDE AKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHT DTRKPAFRWL
Sbjct: 171 NVELISLDEAAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTMDTRKPAFRWL 230

Query: 154 GV--NRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVD 211
           G      +  L  S NL++SRKR FG+D+TNISF+R +++   +GD++ + K + +M+  
Sbjct: 231 GSEGKTWDETLHKS-NLNDSRKRAFGSDITNISFERNKVELFTSGDLNPNPK-KPRMENG 288

Query: 212 DLVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEVNTSK-NNVKGAHDWESLTSKYCPQY 270
             +   D +N +  + Q  +SY+FGPFAP  VP+V  S+ NN+K  HDW SL + + PQY
Sbjct: 289 SGLGEADENNLKQGIKQASKSYEFGPFAPACVPKVGASQNNNMKQVHDWGSLATAHSPQY 348

Query: 271 HNQALRDLFSHYMEAWQSWYTEVAGKTIRQI 301
            N+ALR+LFSHYMEAW+ WY+E+A K   QI
Sbjct: 349 QNEALRELFSHYMEAWKLWYSEIARKRPLQI 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477293|ref|XP_003608932.1| E2F transcription factor-like protein [Medicago truncatula] gi|355509987|gb|AES91129.1| E2F transcription factor-like protein [Medicago truncatula]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 157/278 (56%), Positives = 197/278 (70%), Gaps = 21/278 (7%)

Query: 36  SDDEDDDE--------DDDSSSNPNPGSQSDSLNPRSAHKSSKNDSRREKSLGLLTQNFV 87
           SD+ED+DE          +S S P  GSQ+D+LNP SA   S  + RREKSL LLTQNFV
Sbjct: 116 SDEEDEDELLSQTTGSQGESLSQPT-GSQNDNLNPNSAFPRSLKNDRREKSLALLTQNFV 174

Query: 88  RLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRK 147
           +LFVCSN++MI+LD+ A+LLLGDA+N+S MRTKVRRLYDIANVL+SMNLIEKTHT DTRK
Sbjct: 175 KLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRK 234

Query: 148 PAFRWLGVNRLEIGLADSLN--LDESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKME 205
           PAFRWLG+    +  A   N   +ESRKR FG DVTNISF R RMD  + GD  +   ME
Sbjct: 235 PAFRWLGLKGKTLNEASLYNSKQNESRKRAFGNDVTNISFARNRMDLFMGGDFKKQKTME 294

Query: 206 KQ--MKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEVNTSKNNVKGAHDWESLT 263
               +  +D+ + +  +++ N        YQFGPFAP  V +  +S+N VK  HDWESL 
Sbjct: 295 NDSGLCQEDVKQGIKQTSAAN--------YQFGPFAPAFVSKAGSSENKVKQVHDWESLA 346

Query: 264 SKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGKTIRQI 301
           +++CPQY NQAL++L+SHYMEAW+SWY+EVAGK   Q+
Sbjct: 347 TEHCPQYQNQALKELYSHYMEAWKSWYSEVAGKRSTQV 384

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469501|ref|XP_004152458.1| PREDICTED: E2F transcription factor-like E2FE-like [Cucumis sativus]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 155/268 (57%), Positives = 196/268 (73%), Gaps = 7/268 (2%)

Query: 36  SDDEDDDEDDDSSSNPNPGSQSDSLNPRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNV 95
           SDDED+DE     SNP     S +  P+S+  S K D+RREKSL LLTQNFV+LF+CS+V
Sbjct: 120 SDDEDEDE---RFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHV 176

Query: 96  DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGV 155
           +MI+LDE AKLLLGD HN+S+MRTKVRRLYDIANVLSSMNLIEKTHT DTRKPAFRWLGV
Sbjct: 177 NMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGV 236

Query: 156 NRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVDDLVR 215
            R ++    +L L ESRKR FGTDVTN+S+K+ + + S     +  + M+K ++ D+  +
Sbjct: 237 -RGKVKNEPTL-LPESRKRAFGTDVTNVSYKKTKAENSAYQGFNHCLNMQKLVQCDNSSQ 294

Query: 216 VVDGSNSENYVNQGPRSYQFGPFAPESVPEVNT-SKNNVKGAHDWESLTSKYCPQYHNQA 274
               ++ +    +  +SYQFGPFAP SV +V     NNVK  HDWE+L+S + PQYHNQA
Sbjct: 295 EDSQNSQDQECERTSKSYQFGPFAPVSVAKVGVLDNNNVKRTHDWENLSSTFRPQYHNQA 354

Query: 275 LRDLFSHYMEAWQSWYTEVAGKTIRQIS 302
           L++LFSHY+EAW+SWY+E   K I QIS
Sbjct: 355 LKELFSHYVEAWKSWYSEAVKKPI-QIS 381

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487782|ref|XP_004157798.1| PREDICTED: E2F transcription factor-like E2FE-like [Cucumis sativus]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 155/268 (57%), Positives = 196/268 (73%), Gaps = 7/268 (2%)

Query: 36  SDDEDDDEDDDSSSNPNPGSQSDSLNPRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNV 95
           SDDED+DE     SNP     S +  P+S+  S K D+RREKSL LLTQNFV+LF+CS+V
Sbjct: 120 SDDEDEDE---RFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHV 176

Query: 96  DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGV 155
           +MI+LDE AKLLLGD HN+S+MRTKVRRLYDIANVLSSMNLIEKTHT DTRKPAFRWLGV
Sbjct: 177 NMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGV 236

Query: 156 NRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQSIKMEKQMKVDDLVR 215
            R ++    +L L ESRKR FGTDVTN+S+K+ + + S     +  + M+K ++ D+  +
Sbjct: 237 -RGKVKNEPTL-LPESRKRAFGTDVTNVSYKKTKAENSAYQGFNHCLNMQKLVQCDNSSQ 294

Query: 216 VVDGSNSENYVNQGPRSYQFGPFAPESVPEVNT-SKNNVKGAHDWESLTSKYCPQYHNQA 274
               ++ +    +  +SYQFGPFAP SV +V     NNVK  HDWE+L+S + PQYHNQA
Sbjct: 295 EDSQNSQDQECERTSKSYQFGPFAPVSVAKVGVLDNNNVKRTHDWENLSSTFRPQYHNQA 354

Query: 275 LRDLFSHYMEAWQSWYTEVAGKTIRQIS 302
           L++LFSHY+EAW+SWY+E   K I QIS
Sbjct: 355 LKELFSHYVEAWKSWYSEAVKKPI-QIS 381

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2100444	403	DEL1 "DP-E2F-like 1" [Arabidop	0.754	0.565	0.527	8.4e-58
TAIR|locus:2100272	354	DEL3 "DP-E2F-like protein 3" [	0.698	0.596	0.466	1.7e-43
TAIR|locus:2147865	359	DEL2 "DP-E2F-like 2" [Arabidop	0.705	0.593	0.396	8.3e-35
RGD|1310258	902	E2f7 "E2F transcription factor	0.377	0.126	0.443	2.6e-18
UNIPROTKB|A0AVK6	867	E2F8 "Transcription factor E2F	0.307	0.107	0.444	9.6e-18
UNIPROTKB|F6XY29	877	E2F7 "Uncharacterized protein"	0.370	0.127	0.442	1.4e-17
MGI|MGI:1289147	904	E2f7 "E2F transcription factor	0.370	0.123	0.434	1.5e-17
UNIPROTKB|E2R369	907	E2F7 "Uncharacterized protein"	0.370	0.123	0.442	1.5e-17
UNIPROTKB|E9PP48	355	E2F8 "Transcription factor E2F	0.307	0.261	0.444	1.8e-17
UNIPROTKB|F8VSE7	693	E2F7 "Transcription factor E2F	0.364	0.158	0.45	2.6e-17

TAIR|locus:2100444 DEL1 "DP-E2F-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 125/237 (52%), Positives = 164/237 (69%)

Query:    62 PRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSN-VDMITLDEVAKLLLGDAHNTSVMRTK 120
             P+S+  S K D+RREKSLGLLTQNF++LF+CS  + +I+LD+ AKLLLGDAHNTS+MRTK
Sbjct:   158 PQSSDPS-KIDNRREKSLGLLTQNFIKLFICSEAIRIISLDDAAKLLLGDAHNTSIMRTK 216

Query:   121 VRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVN-RLEIGLADSLNLDESRKRTFGTD 179
             VRRLYDIANVLSSMNLIEKTHT D+RKPAF+WLG N      L+  L   ESRKR FGTD
Sbjct:   217 VRRLYDIANVLSSMNLIEKTHTLDSRKPAFKWLGYNGEPTFTLSSDLLQLESRKRAFGTD 276

Query:   180 VTNISFKRKRMDTSINGDISQS-IKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPF 238
             +TN++ KR +  +S   + ++  +KM+K    +         +   + ++G   Y FGPF
Sbjct:   277 ITNVNVKRSKSSSSSQENATERRLKMKKHSTPESSYNKSFDVHESRHGSRG--GYHFGPF 334

Query:   239 APES--VPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEV 293
             AP +   P      N+ + A D E+L S Y P Y NQ L+DLFSHYM+AW++W++EV
Sbjct:   335 APGTGTYPTAGLEDNS-RRAFDVENLDSDYRPSYQNQVLKDLFSHYMDAWKTWFSEV 390

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2100272 DEL3 "DP-E2F-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 106/227 (46%), Positives = 134/227 (59%)

Query:    68 SSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDI 127
             SSK D ++EKSL LL QNFV++F+CS+ D+ITLD  AK LL D+ ++  MRTKVRRLYDI
Sbjct:   139 SSKMDQKKEKSLWLLAQNFVKMFLCSDDDLITLDSAAKALLSDSPDSVHMRTKVRRLYDI 198

Query:   128 ANVLSSMNLIEKTHTADTRKPAFRWLGVNRL-EIGLADSLNLDESRKRTFGTDVTNISFK 186
             ANV +SMNLIEKTH   TRKPA+RWLG   + E GL+   N  E  KR FGT++TN+  K
Sbjct:   199 ANVFASMNLIEKTHIPVTRKPAYRWLGSKSIAERGLS-LFNSGEP-KRVFGTEITNLRAK 256

Query:   187 RKRMDTSINGDISQSIKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEV 246
             R +   S    I + I  +K           D  N+E         Y FGPF+P    + 
Sbjct:   257 RNKTYCS---SIRKQIGYKKH----------DEENTEQESKPAASKYVFGPFSPIGASKT 303

Query:   247 NTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEV 293
             N  K       + E+L S Y PQY NQ +  L  H+ EAW+ WY EV
Sbjct:   304 NNDKVGKGRLLEIEALASTYQPQYCNQEITGLLGHFTEAWKKWYAEV 350

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

TAIR|locus:2147865 DEL2 "DP-E2F-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 96/242 (39%), Positives = 138/242 (57%)

Query:    68 SSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDI 127
             S + D+R+E++L LL QNFV+LF+CS+ D++T D   K LL ++ + + MR KVRRLYDI
Sbjct:   132 SPRPDNRKERTLWLLAQNFVKLFLCSDDDLVTFDSATKALLNESQDMN-MRKKVRRLYDI 190

Query:   128 ANVLSSMNLIEKTHTADTRKPAFRWLGV-----NRLEIGLADSLNLDESRKRTFGTDVTN 182
             ANV SSM LIEKTH  +T+KPA+RWLG      NR   G A   + +  +KR FGT++TN
Sbjct:   191 ANVFSSMKLIEKTHVPETKKPAYRWLGSKTIFENRFIDGSASLCDRNVPKKRAFGTELTN 250

Query:   183 ISFKRKRM-----DTSINGDISQSIKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGP 237
             ++ KR +      D+  NG+ + SI + KQ + DD             V    +++  G 
Sbjct:   251 VNAKRNKSGCSKEDSKRNGNQNTSIVI-KQEQCDD-------------VKPDVKNFASGS 296

Query:   238 FAPESVPEVNTSKNNVKGAHDW---ESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVA 294
               P    E N   NN++        E+L++ Y P Y N  L  LF+HY E ++S Y E  
Sbjct:   297 STPAGTSESNDMGNNIRPRGRLGVIEALSTLYQPSYCNPELLGLFAHYNETFRS-YQEEF 355

Query:   295 GK 296
             G+
Sbjct:   356 GR 357

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

RGD|1310258 E2f7 "E2F transcription factor 7" [Rattus norvegicus (taxid:10116)]

 Score = 233 (87.1 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 55/124 (44%), Positives = 83/124 (66%)

Query:    64 SAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNT---SVMRTK 120
             S + SS  +SR++KSL +++Q FV LF+ S   ++TLD  AK+L+ ++ +T   S  +TK
Sbjct:   273 SDYPSSSANSRKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDTPDHSKFKTK 332

Query:   121 VRRLYDIANVLSSMNLIEKTHTADTR--KPAFRWLG---VNRLEIGLAD-SLN-LDESRK 173
             VRRLYDIANVL+S+ LI+K H  + R  KPAF+W+G    + ++  L D S + L E +K
Sbjct:   333 VRRLYDIANVLTSLALIKKVHVTEERGRKPAFKWIGPVDFSSIDEELLDVSASVLPELKK 392

Query:   174 RTFG 177
              T+G
Sbjct:   393 ETYG 396

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0001047 "core promoter binding" evidence=ISO;ISS

GO:0001890 "placenta development" evidence=ISO;ISS

GO:0002040 "sprouting angiogenesis" evidence=ISO;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;ISS

GO:0003714 "transcription corepressor activity" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;ISS

GO:0030330 "DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0032466 "negative regulation of cytokinesis" evidence=ISO;ISS

GO:0032877 "positive regulation of DNA endoreduplication" evidence=ISO;ISS

GO:0042802 "identical protein binding" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0060707 "trophoblast giant cell differentiation" evidence=ISO;ISS

GO:0060718 "chorionic trophoblast cell differentiation" evidence=ISO;ISS

GO:0070365 "hepatocyte differentiation" evidence=ISO;ISS

GO:0071930 "negative regulation of transcription involved in G1/S phase of mitotic cell cycle" evidence=ISO;ISS

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=ISO;ISS

UNIPROTKB|A0AVK6 E2F8 "Transcription factor E2F8" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
 Identities = 44/99 (44%), Positives = 69/99 (69%)

Query:    62 PRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAH----NTSVM 117
             P    +++  +SR++KSL +++Q FV LF+ S   +++L+  AK+L+G+ H    + S  
Sbjct:   249 PGVEFRAASVNSRKDKSLRVMSQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKF 308

Query:   118 RTKVRRLYDIANVLSSMNLIEKTHTADTR--KPAFRWLG 154
             +TK+RRLYDIANVLSS++LI+K H  + R  KPAF+W G
Sbjct:   309 KTKIRRLYDIANVLSSLDLIKKVHVTEERGRKPAFKWTG 347

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0001047 "core promoter binding" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0002040 "sprouting angiogenesis" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0001890 "placenta development" evidence=ISS

GO:0032466 "negative regulation of cytokinesis" evidence=ISS

GO:0032877 "positive regulation of DNA endoreduplication" evidence=ISS

GO:0033301 "cell cycle comprising mitosis without cytokinesis" evidence=ISS

GO:0060707 "trophoblast giant cell differentiation" evidence=ISS

GO:0060718 "chorionic trophoblast cell differentiation" evidence=ISS

GO:0070365 "hepatocyte differentiation" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

UNIPROTKB|F6XY29 E2F7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 226 (84.6 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 54/122 (44%), Positives = 81/122 (66%)

Query:    66 HKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNT---SVMRTKVR 122
             + SS  +SR++KSL +++Q FV LF+ S   +ITLD  AK+L+ ++ +T   S  +TKVR
Sbjct:   275 YPSSSANSRKDKSLRIMSQKFVMLFLVSKTKIITLDVAAKILIEESQDTPDHSKFKTKVR 334

Query:   123 RLYDIANVLSSMNLIEKTHTADTR--KPAFRWLG---VNRLEIGLAD-SLN-LDESRKRT 175
             RLYDIANVL+S+ LI+K H  + R  KPAF+W+G    +  +  L D S + L E ++ T
Sbjct:   335 RLYDIANVLTSLALIKKVHVTEERGRKPAFKWIGPVDFSSSDEELVDVSASVLPELKRET 394

Query:   176 FG 177
             +G
Sbjct:   395 YG 396

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:1289147 E2f7 "E2F transcription factor 7" [Mus musculus (taxid:10090)]

 Score = 226 (84.6 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 53/122 (43%), Positives = 81/122 (66%)

Query:    66 HKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNT---SVMRTKVR 122
             + SS  +SR++KSL +++Q FV LF+ S   ++TLD  AK+L+ ++ +T   S  +TKVR
Sbjct:   275 YPSSSANSRKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDTPDHSKFKTKVR 334

Query:   123 RLYDIANVLSSMNLIEKTHTADTR--KPAFRWLG---VNRLEIGLAD-SLN-LDESRKRT 175
             RLYDIANVL+S+ LI+K H  + R  KPAF+W+G    + ++  L D S + L E +K  
Sbjct:   335 RLYDIANVLTSLALIKKVHVTEERGRKPAFKWIGPVDFSSIDEELLDVSASILPELKKEA 394

Query:   176 FG 177
             +G
Sbjct:   395 YG 396

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA;IMP

GO:0001047 "core promoter binding" evidence=ISO;IDA

GO:0001890 "placenta development" evidence=IMP

GO:0002040 "sprouting angiogenesis" evidence=ISO;IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;IMP;IDA

GO:0003714 "transcription corepressor activity" evidence=IDA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;IDA

GO:0030330 "DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0032466 "negative regulation of cytokinesis" evidence=IMP

GO:0032877 "positive regulation of DNA endoreduplication" evidence=IMP

GO:0042802 "identical protein binding" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0060707 "trophoblast giant cell differentiation" evidence=IMP

GO:0060718 "chorionic trophoblast cell differentiation" evidence=IMP

GO:0070365 "hepatocyte differentiation" evidence=IMP

GO:0071930 "negative regulation of transcription involved in G1/S phase of mitotic cell cycle" evidence=ISO

GO:2000134 "negative regulation of G1/S transition of mitotic cell cycle" evidence=IDA

UNIPROTKB|E2R369 E2F7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 226 (84.6 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 54/122 (44%), Positives = 81/122 (66%)

Query:    66 HKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNT---SVMRTKVR 122
             + SS  +SR++KSL +++Q FV LF+ S   +ITLD  AK+L+ ++ +T   S  +TKVR
Sbjct:   275 YPSSSANSRKDKSLRIMSQKFVMLFLVSKTKIITLDVAAKILIEESQDTPDHSKFKTKVR 334

Query:   123 RLYDIANVLSSMNLIEKTHTADTR--KPAFRWLG---VNRLEIGLAD-SLN-LDESRKRT 175
             RLYDIANVL+S+ LI+K H  + R  KPAF+W+G    +  +  L D S + L E ++ T
Sbjct:   335 RLYDIANVLTSLALIKKVHVTEERGRKPAFKWIGPVDFSSSDEELVDVSASVLPELKRET 394

Query:   176 FG 177
             +G
Sbjct:   395 YG 396

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E9PP48 E2F8 "Transcription factor E2F8" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 44/99 (44%), Positives = 69/99 (69%)

Query:    62 PRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAH----NTSVM 117
             P    +++  +SR++KSL +++Q FV LF+ S   +++L+  AK+L+G+ H    + S  
Sbjct:   249 PGVEFRAASVNSRKDKSLRVMSQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKF 308

Query:   118 RTKVRRLYDIANVLSSMNLIEKTHTADTR--KPAFRWLG 154
             +TK+RRLYDIANVLSS++LI+K H  + R  KPAF+W G
Sbjct:   309 KTKIRRLYDIANVLSSLDLIKKVHVTEERGRKPAFKWTG 347

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F8VSE7 E2F7 "Transcription factor E2F7" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 54/120 (45%), Positives = 79/120 (65%)

Query:    68 SSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLG---DAHNTSVMRTKVRRL 124
             SS  +SR++KSL +++Q FV LF+ S   ++TLD  AK+L+    DA + S  +TKVRRL
Sbjct:   276 SSSANSRKDKSLRIMSQKFVMLFLVSKTKIVTLDVAAKILIEESQDAPDHSKFKTKVRRL 335

Query:   125 YDIANVLSSMNLIEKTHTADTR--KPAFRWLG---VNRLEIGLAD-SLN-LDESRKRTFG 177
             YDIANVL+S+ LI+K H  + R  KPAF+W+G    +  +  L D S + L E ++ T+G
Sbjct:   336 YDIANVLTSLALIKKVHVTEERGRKPAFKWIGPVDFSSSDEELVDVSASVLPELKRETYG 395

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016169001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (388 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
pfam02319	67	pfam02319, E2F_TDP, E2F/DP family winged-helix DNA	3e-22

>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain

 Score = 87.6 bits (218), Expect = 3e-22
 Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 14/81 (17%)

Query: 74  RREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSS 133
           R+EKSLGLLTQ F++L   S   +  L+E AK L     +      + RR+YDI NVL  
Sbjct: 1   RKEKSLGLLTQKFLKLCEKSPDGITDLNEAAKEL-----DVK----QKRRIYDITNVLEG 51

Query: 134 MNLIEKTHTADTRKPAFRWLG 154
           + LIEK       K   RW+G
Sbjct: 52  IGLIEK-----KSKNEIRWIG 67

This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG2578	388	consensus Transcription factor E2F/dimerization pa	100.0
KOG2577	354	consensus Transcription factor E2F/dimerization pa	99.97
PF02319	71	E2F_TDP: E2F/DP family winged-helix DNA-binding do	99.87
KOG2578	388	consensus Transcription factor E2F/dimerization pa	99.74
KOG2829	326	consensus E2F-like protein [Transcription]	99.52
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	88.62
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	81.65

>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription]

Probab=100.00  E-value=2.5e-46  Score=353.67  Aligned_cols=256  Identities=36%  Similarity=0.508  Sum_probs=203.0

Q ss_pred             CCCCCCCccCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCc-eecHHHHHHHHhcCc
Q 042344           36 SDDEDDDEDDDSSSNPNPGSQSDSLNPRS---AHKSSKNDSRREKSLGLLTQNFVRLFVCSNVD-MITLDEVAKLLLGDA  111 (302)
Q Consensus        36 sd~~~~~~~~d~~~~~~~~sq~~~~~p~s---~~~~~k~~~RkdKSLglLTqkFV~L~l~sp~g-vIdLneAA~~L~g~~  111 (302)
                      .++|+|+|+   .+.|.+.++.+.+.|++   ...+++.+.|+++||++|||+||+||+++++. .|+|+.||+.|+++.
T Consensus       118 ~s~e~~~ee---~~~s~tstptd~s~~g~l~e~S~~~k~DnrkekSL~lL~qnFvklflcs~~~~lvslD~Aak~Ll~ds  194 (388)
T KOG2578|consen  118 VSFEEESEE---RGVSCTSTPTDQSTDGLLEERSRSSKRDNRKEKSLWLLAQNFVKLFLCSDDDILVSLDSAAKALLKDS  194 (388)
T ss_pred             ccccccccc---cCCccccCCCCCCCCCcchhcCCCCcccchhhhHHHHHHHHHHHheeccccceEEeecHHHHHHhcCC
Confidence            455555555   56788888888888887   45567889999999999999999999999987 999999999999999


Q ss_pred             CCccccccchhhhhhHHHHHhhhhhheecccCCCCCCcEEeecccccccc-----cccccCcchHHHhhhHHHHHHHHHH
Q 042344          112 HNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIG-----LADSLNLDESRKRTFGTDVTNISFK  186 (302)
Q Consensus       112 ~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn~iqWiG~~~~~n~-----~~~a~~~~~s~kr~l~~El~nL~~~  186 (302)
                      +++..|++++||||||||||.+||||||+|+..++||+|+|+|..++..+     +...+..+.++.++|++||+|+.++
T Consensus       195 ~~~~~mRtkvRRLYDIANVlssm~LIeKtH~l~trkPafrwlG~~~~~t~sf~~gs~sL~~~n~~K~rafgteItnvnak  274 (388)
T KOG2578|consen  195 EDEPPMRTKVRRLYDIANVLSSMNLIEKTHYLFTRKPAFRWLGSKPIQTGSFFQGSRSLSEQNLPKPRAFGTEITNVNAK  274 (388)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhheeCCCccccccccccchhHhhcCCCCcccCCccccchhhh
Confidence            99999999999999999999999999999999999999999999874332     3445556888889999999999999


Q ss_pred             HHhHHHHhhh-hcchhhhhhhhhccCCceeeecCCCcccccCCCCCCccccCCCc-cCCcccc---CCcCCcccccchhh
Q 042344          187 RKRMDTSING-DISQSIKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAP-ESVPEVN---TSKNNVKGAHDWES  261 (302)
Q Consensus       187 E~~LD~~I~~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpf~p-~~~~~~~---~~~~~~~~~~dwe~  261 (302)
                      +++--+.-.. ...-.++|.+|.......  +.--++-..+++..++|+||||+| ++++...   +...+.++..++|+
T Consensus       275 r~kSs~s~~en~~~~~~~~~k~~~e~~~y--e~~~~l~~~~~p~~~~~~~gp~~P~igt~~t~~~~~~~~~srr~f~ie~  352 (388)
T KOG2578|consen  275 RNKSSCSSMENFMFAEVVTKKHAAEKMRY--EAFAQLSSRLKPLPMAYLFGPFLPEIGTSQTNKQFNFPATSRRLFNIEA  352 (388)
T ss_pred             hccCcchhhhhHHHHHhhhhhccchhhhh--hhhhhhhhccCCcccccccCCCCCCCCCcchhhccCCCCCccccccchh
Confidence            9986443222 222223333332222111  000112345788888999999999 6655444   44668999999999


Q ss_pred             hhhccCcccccHHHHHHHHHHHHHHHHHHHHHhcc
Q 042344          262 LTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGK  296 (302)
Q Consensus       262 la~~~~pqy~nqal~~lf~hy~eawkswy~e~~~~  296 (302)
                      |++.|+|+|||.++..+|.||.+++.+-..+++|.
T Consensus       353 l~sdyqPsy~n~e~~~~~~~~~~~f~v~k~~~~r~  387 (388)
T KOG2578|consen  353 LTSDYQPSYCNSESKKFKQGTNSTFQVVKKGETRP  387 (388)
T ss_pred             cccccCccccChhhhhhhcccceeeeeeccccCCC
Confidence            99999999999999999999999998887777664

>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]

Probab=99.97  E-value=6.9e-32  Score=259.02  Aligned_cols=111  Identities=31%  Similarity=0.499  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecccCCCCCC
Q 042344           69 SKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKP  148 (302)
Q Consensus        69 ~k~~~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn  148 (302)
                      ....+|+++|||+||+|||.|++.+|+|+++|+.||++|          .|+|||||||||||||||||||+     +||
T Consensus        63 ~~~~~R~d~SLglLTkKFv~Llq~s~dGvldLn~aA~~L----------~VqKRRIYDITNVLEGI~LIeKk-----sKN  127 (354)
T KOG2577|consen   63 PSESTRSDTSLGLLTKKFVDLLQESPDGVLDLNKAAEVL----------NVQKRRIYDITNVLEGIGLIEKK-----SKN  127 (354)
T ss_pred             CCCcccchhhHHHHHHHHHHHHHhCCCceeeHHHHHHHh----------ccccceeeehhhhhhcccceeec-----ccc
Confidence            446689999999999999999999999999999999999          89999999999999999999999     899


Q ss_pred             cEEeecccccccccccccCcchHHHhhhHHHHHHHHHHHHhHHHHhhhhcch
Q 042344          149 AFRWLGVNRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDISQ  200 (302)
Q Consensus       149 ~iqWiG~~~~~n~~~~a~~~~~s~kr~l~~El~nL~~~E~~LD~~I~~~~~q  200 (302)
                      +|||+|.+....   .+   ...+.+.|++|++.|+++|+.||++|+.|+.+
T Consensus       128 ~IqW~G~~~~~~---~~---~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~  173 (354)
T KOG2577|consen  128 NIQWIGGDFNST---GG---VPERLNGLEAEVEDLSQEEDDLDQLIRDCQQN  173 (354)
T ss_pred             ceeeecCCCccc---cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999986321   12   34677889999999999999999999999976

>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle

Probab=99.87  E-value=5.3e-23  Score=157.08  Aligned_cols=71  Identities=49%  Similarity=0.838  Sum_probs=63.5

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecccCCCCCCcEEee
Q 042344           74 RREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWL  153 (302)
Q Consensus        74 RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn~iqWi  153 (302)
                      |+++||+.||++||++|...+.+.+++++||+.|+.+     ..++++||||||+|||+|||||+|.     +|+.|+|+
T Consensus         1 r~~~sL~~lt~~fi~~~~~~~~~~i~l~~ia~~l~~~-----~~k~~~RRlYDI~NVLealgli~K~-----~k~~~~W~   70 (71)
T PF02319_consen    1 RKEKSLKLLTQRFIQLFESSPDKSISLNEIADKLISE-----NVKTQRRRLYDIINVLEALGLIEKQ-----SKNSYKWI   70 (71)
T ss_dssp             TTTTHHHHHHHHHHHHHHHCCCTEEEHHHHHHHCHHH-----CCHHHCHHHHHHHHHHHHCTSEEEE-----ETTEEEE-
T ss_pred             CCcCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHccc-----ccccccchhhHHHHHHHHhCceeec-----CCCceEec
Confidence            7899999999999999999888999999999999543     2356999999999999999999998     79999999


Q ss_pred             c
Q 042344          154 G  154 (302)
Q Consensus       154 G  154 (302)
                      |
T Consensus        71 G   71 (71)
T PF02319_consen   71 G   71 (71)
T ss_dssp             -
T ss_pred             C
Confidence            8

Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.

>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription]

Probab=99.74  E-value=2.1e-18  Score=164.56  Aligned_cols=77  Identities=40%  Similarity=0.672  Sum_probs=71.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecccCCCCCC
Q 042344           69 SKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTADTRKP  148 (302)
Q Consensus        69 ~k~~~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~sKn  148 (302)
                      ....+|++||||+||++|+.|+.......+-|++||..|          +|.+||||||+||||+||++.|.     .||
T Consensus        16 lqvysrkekslgvlv~nfl~lynr~dvdlvgLddaA~Kl----------gVErRRIYDiVNvlEsig~var~-----~Kn   80 (388)
T KOG2578|consen   16 LQVYSRKEKSLGVLVQNFLILYNRSDVDLVGLDDAARKL----------GVERRRIYDIVNVLESIGAVARR-----GKN   80 (388)
T ss_pred             chhhccccchhhHHHHHHHHHhcCCCcceechhhHHHhc----------CchHHHHHHHHHHHHHHHHHHhc-----ccC
Confidence            356789999999999999999999888999999999999          89999999999999999999998     899


Q ss_pred             cEEeeccccccc
Q 042344          149 AFRWLGVNRLEI  160 (302)
Q Consensus       149 ~iqWiG~~~~~n  160 (302)
                      .|.|+|...++.
T Consensus        81 qYsWkGf~aiPr   92 (388)
T KOG2578|consen   81 QYSWKGFGAIPR   92 (388)
T ss_pred             cccccchhhhhH
Confidence            999999987653

>KOG2829 consensus E2F-like protein [Transcription]

Probab=99.52  E-value=3.4e-14  Score=134.83  Aligned_cols=166  Identities=20%  Similarity=0.247  Sum_probs=122.7

Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCC------------cccccc
Q 042344           53 PGSQSDSLN-PRSAHKSSKNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHN------------TSVMRT  119 (302)
Q Consensus        53 ~~sq~~~~~-p~s~~~~~k~~~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~------------~s~~kv  119 (302)
                      .+.+++.+. +|+++. .+......+.|.+++.+.++-+..  .|.++.+++|+.|+.+...            ...+++
T Consensus        20 ~~~~~s~~~~~~~a~~-~~ks~k~g~gLRhfs~kVCeKve~--Kg~TtYneVADelVaef~~~n~~~~i~~n~~~yd~KN   96 (326)
T KOG2829|consen   20 LGNQPSDSGSSWSAGR-KRKSDKAGGGLRHFSMKVCEKVER--KGTTTYNEVADELVAEFAGANNYSHICPNEQEYDQKN   96 (326)
T ss_pred             ccCCcCCCCCcccccc-CCCCCCCCcchhhhhHHHHHHHHh--cCCccHHHHHHHHHHHHhccccccccCccccccchHH
Confidence            444444433 565554 334445678899999999998887  5799999999999755321            236899


Q ss_pred             chhhhhhHHHHHhhhhhheecccCCCCCCcEEeecccccccccccccCcchHHHhhhHHHHHHHHHHHHhHHHHhhhhcc
Q 042344          120 KVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVNRLEIGLADSLNLDESRKRTFGTDVTNISFKRKRMDTSINGDIS  199 (302)
Q Consensus       120 kkRRLYDItNVLEgIgLIEK~~~~~~sKn~iqWiG~~~~~n~~~~a~~~~~s~kr~l~~El~nL~~~E~~LD~~I~~~~~  199 (302)
                      .+||+||..|||++|+||.|.      |..|+|+|.+...                 .+|+++|+.++.++-++|+.++.
T Consensus        97 IRRRVYDALNVlmAmnIIsKd------KKEIrW~GLP~~s-----------------s~dv~~le~Er~k~~erI~kK~a  153 (326)
T KOG2829|consen   97 IRRRVYDALNVLMAMNIISKD------KKEIRWIGLPATS-----------------SQDVSELEEERKKRMERIKKKAA  153 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc------cceeeeeccCccc-----------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997      8899999998511                 17899999999999999999988


Q ss_pred             hhhhhhhhhccCCceeeecCCCcccccCCCCCCccccCCCccCCccc
Q 042344          200 QSIKMEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVPEV  246 (302)
Q Consensus       200 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpf~p~~~~~~  246 (302)
                      +...|..|...=-+|+.-++.+..++-.+.. + .+=||-=....+.
T Consensus       154 ~lqEl~~q~~~fknLV~RN~~~e~~~~~P~~-~-i~LPFiiinT~k~  198 (326)
T KOG2829|consen  154 QLQELIEQVSAFKNLVQRNRHAESQGQPPSE-N-IHLPFIIINTSKK  198 (326)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhccCCCCc-c-cccceEEEecCCC
Confidence            8777777665555666555555555222222 3 6678866555444

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=88.62  E-value=1.1  Score=32.99  Aligned_cols=45  Identities=18%  Similarity=0.204  Sum_probs=37.7

Q ss_pred             HHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344           84 QNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT  140 (302)
Q Consensus        84 qkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~  140 (302)
                      .+.+..|+.  .+..+..+.|+.+          +..+..+|++.+-|+..|||++.
T Consensus        11 ~~vy~~Ll~--~~~~t~~eIa~~l----------~i~~~~v~~~L~~L~~~GlV~~~   55 (68)
T PF01978_consen   11 AKVYLALLK--NGPATAEEIAEEL----------GISRSTVYRALKSLEEKGLVERE   55 (68)
T ss_dssp             HHHHHHHHH--HCHEEHHHHHHHH----------TSSHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHH--cCCCCHHHHHHHH----------CcCHHHHHHHHHHHHHCCCEEEE
Confidence            344444443  3679999999999          78999999999999999999998

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=81.65  E-value=4.4  Score=28.44  Aligned_cols=46  Identities=24%  Similarity=0.251  Sum_probs=35.9

Q ss_pred             HHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhh-hheec
Q 042344           84 QNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMN-LIEKT  140 (302)
Q Consensus        84 qkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIg-LIEK~  140 (302)
                      .+.+.+|...... ++..+.|+.|          ++.+|-||--.+.|+..| .|+..
T Consensus         3 ~~il~~L~~~~~~-it~~eLa~~l----------~vS~rTi~~~i~~L~~~~~~I~~~   49 (55)
T PF08279_consen    3 KQILKLLLESKEP-ITAKELAEEL----------GVSRRTIRRDIKELREWGIPIESK   49 (55)
T ss_dssp             HHHHHHHHHTTTS-BEHHHHHHHC----------TS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred             HHHHHHHHHcCCC-cCHHHHHHHh----------CCCHHHHHHHHHHHHHCCCeEEee
Confidence            3567777666544 9999999999          799999999999999998 44433

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
1cf7_A	76	Structural Basis Of Dna Recognition By The Heterodi		1e-05

>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 76

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 73  SRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLS 132
           SR EKSLGLLT  FV L   +       D V  L L  A +T  +R K RR+YDI NVL 
Sbjct: 6   SRHEKSLGLLTTKFVSLLQEAK------DGVLDLKL--AADTLAVRQK-RRIYDITNVLE 56
Query: 133 SMNLIEKTHTADTRKPAFRWLGV 155
            + LIEK       K + +W GV
Sbjct: 57  GIGLIEK-----KSKNSIQWKGV 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
1cf7_A	76	Protein (transcription factor E2F-4); E2F, winged-	7e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 76

 Score = 70.3 bits (172), Expect = 7e-16
 Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 73  SRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLS 132
           SR EKSLGLLT  FV L   +   ++ L   A  L            + RR+YDI NVL 
Sbjct: 6   SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAV---------RQKRRIYDITNVLE 56

Query: 133 SMNLIEKTHTADTRKPAFRWLGV 155
            + LIEK       K + +W GV
Sbjct: 57  GIGLIEK-----KSKNSIQWKGV 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 52/279 (18%), Positives = 88/279 (31%), Gaps = 79/279 (28%)

Query: 5   RPEDAFTTLDG----GNS---AKVGQN---RFTMFFFIFW---GSDDEDDD-----EDDD 46
           RP      +DG    G +     V  +   +  M F IFW    + +  +      +   
Sbjct: 148 RPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 47  SSSNPNPGSQSD-SLNPRSAHKSSKNDSRREKSLGLLTQNFVR-LFVCSNVDMITLDEV- 103
              +PN  S+SD S N +       +  + E    L ++ +   L V        L  V 
Sbjct: 207 YQIDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENCLLV--------LLNVQ 254

Query: 104 -AKLLLGDAHNTSVMRTKV-RRLYDIANVLS-------SMNLIEKTHTADTRKPAF-RWL 153
            AK    +A N S  +  +  R   + + LS       S++    T T D  K    ++L
Sbjct: 255 NAKAW--NAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 154 GVNRLEIGLADSLNLDESRKRTFGTDVTNIS----FKRKRMDTSINGDISQSIKMEKQMK 209
                           +  +    T+   +S      R  + T  N          K + 
Sbjct: 312 DC-----------RPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---------WKHVN 351

Query: 210 VDDLVRVVDGSNSENYVNQGPRSYQ--FGPFA--PESVP 244
            D L  +++ S         P  Y+  F   +  P S  
Sbjct: 352 CDKLTTIIESS----LNVLEPAEYRKMFDRLSVFPPSAH 386

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 30/53 (56%)

Query: 200 QSIK-MEKQMKVDDLVRVVDGSNSENYVNQGPRSYQFGPFAPESVP--EVNTS 249
           Q++K ++  +K                            +A +S P   +  +
Sbjct: 20  QALKKLQASLK---------------------------LYADDSAPALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
1cf7_A	76	Protein (transcription factor E2F-4); E2F, winged-	99.94
1cf7_B	95	Protein (transcription factor DP-2); E2F, winged-h	99.58
2aze_B	106	Transcription factor E2F1; coiled coil, beta sandw	92.85
2kgf_A	140	Capsid protein P27; retrovirus capsid protein, N-t	85.76
2v4x_A	140	JSRV capsid, capsid protein P27; virion, zinc-fing	82.0

>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=99.94  E-value=3.8e-27  Score=182.38  Aligned_cols=72  Identities=44%  Similarity=0.676  Sum_probs=64.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCcccccc-chhhhhhHHHHHhhhhhheecccCCCCCC
Q 042344           70 KNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRT-KVRRLYDIANVLSSMNLIEKTHTADTRKP  148 (302)
Q Consensus        70 k~~~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kv-kkRRLYDItNVLEgIgLIEK~~~~~~sKn  148 (302)
                      ...+|+++||++||++||+||.++++++++|++||+.|          .+ ++||||||+|||||||||+|.     +||
T Consensus         3 ~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L----------~v~~kRRiYDI~NVLe~igli~K~-----~k~   67 (76)
T 1cf7_A            3 GTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTL----------AVRQKRRIYDITNVLEGIGLIEKK-----SKN   67 (76)
T ss_dssp             ---CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHT----------TTCCTHHHHHHHHHHHHHTSEEEE-----ETT
T ss_pred             CCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHh----------CCccceehhhHHHHHhHhcceeec-----CCC
Confidence            45689999999999999999999999999999999999          67 999999999999999999999     899


Q ss_pred             cEEeeccc
Q 042344          149 AFRWLGVN  156 (302)
Q Consensus       149 ~iqWiG~~  156 (302)
                      .|+|+|.+
T Consensus        68 ~~~W~G~~   75 (76)
T 1cf7_A           68 SIQWKGVG   75 (76)
T ss_dssp             EEEEC---
T ss_pred             cEEEeCCC
Confidence            99999976

>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=99.58  E-value=6.3e-16  Score=124.65  Aligned_cols=80  Identities=28%  Similarity=0.441  Sum_probs=64.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCc---------cccccchhhhhhHHHHHhhhhhheec
Q 042344           70 KNDSRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNT---------SVMRTKVRRLYDIANVLSSMNLIEKT  140 (302)
Q Consensus        70 k~~~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~---------s~~kvkkRRLYDItNVLEgIgLIEK~  140 (302)
                      ++..+..++|..++++.++++...  +..+++++|+.|+.++..+         ...++.+||||||+|||++||||+|.
T Consensus         3 ~~~~k~~~GLr~fS~kVcekVk~k--~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K~   80 (95)
T 1cf7_B            3 KKGDKNGKGLRHFSMKVCEKVQRK--GTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKE   80 (95)
T ss_dssp             ------CCHHHHHHHHHHHHHHHH--SEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCCC
T ss_pred             ccccccCccHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceecC
Confidence            566788999999999999999984  6899999999998654321         35678999999999999999999996


Q ss_pred             ccCCCCCCcEEeecccc
Q 042344          141 HTADTRKPAFRWLGVNR  157 (302)
Q Consensus       141 ~~~~~sKn~iqWiG~~~  157 (302)
                            |+.|+|+|.+.
T Consensus        81 ------k~~i~W~g~~~   91 (95)
T 1cf7_B           81 ------KKEIKWIGLPT   91 (95)
T ss_dssp             ------SSCEEBCCCC-
T ss_pred             ------CCEEEEecCCc
Confidence                  88999999875

>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2

Probab=92.85  E-value=0.075  Score=43.04  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=30.2

Q ss_pred             HHHhhhHHHHHHHHHHHHhHHHHhhhhcchhhhh
Q 042344          171 SRKRTFGTDVTNISFKRKRMDTSINGDISQSIKM  204 (302)
Q Consensus       171 s~kr~l~~El~nL~~~E~~LD~~I~~~~~q~~~~  204 (302)
                      .+.+.|+.||+.|..+|+.||++|+.|.++...+
T Consensus         6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l   39 (106)
T 2aze_B            6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL   39 (106)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999875555

>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}

Probab=85.76  E-value=0.081  Score=45.15  Aligned_cols=52  Identities=25%  Similarity=0.453  Sum_probs=37.1

Q ss_pred             cccCCCccCCccccCCcCCcccccchhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHhcc
Q 042344          234 QFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGK  296 (302)
Q Consensus       234 ~~gpf~p~~~~~~~~~~~~~~~~~dwe~la~~~~pqy~nqal~~lf~hy~eawkswy~e~~~~  296 (302)
                      .|||-+|-+..-.+.--+..=.-+||++||..        +|+.  +||+. ||+||.|.++.
T Consensus        33 ~YGp~APyT~~lle~la~~~LtP~DW~~lara--------~Ls~--gqyll-Wkse~~d~~q~   84 (140)
T 2kgf_A           33 QYGATAPYTLAIVESVADNWLTPTDWNTLVRA--------VLSG--GDHLL-WKSEFFENCRD   84 (140)
T ss_dssp             HTCTTSHHHHHHHHHHHTSBCCHHHHHHHHHH--------HCCS--HHHHH-HHHHHHHHHHH
T ss_pred             HhCCCCchHHHHHHHHHhCCCChHHHHHHHHH--------HcCc--chhHH-HHHHHHHHHHH
Confidence            48999997755444433334446899999865        3443  89996 99999998874

>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}

Probab=82.00  E-value=0.17  Score=43.18  Aligned_cols=52  Identities=23%  Similarity=0.536  Sum_probs=35.9

Q ss_pred             cccCCCccCCccccCCcCCcccccchhhhhhccCcccccHHHHHHHHHHHHHHHHHHHHHhcc
Q 042344          234 QFGPFAPESVPEVNTSKNNVKGAHDWESLTSKYCPQYHNQALRDLFSHYMEAWQSWYTEVAGK  296 (302)
Q Consensus       234 ~~gpf~p~~~~~~~~~~~~~~~~~dwe~la~~~~pqy~nqal~~lf~hy~eawkswy~e~~~~  296 (302)
                      .|||-+|-+..-.+.--+.-=--.||++||..        +|..  ++|+. ||+||.|.++.
T Consensus        28 ~YGp~APyT~a~le~La~~~LtP~DW~~lara--------~Ls~--gqyll-Wkse~~d~~q~   79 (140)
T 2v4x_A           28 QYGPTAPFTIAMIENLGTQALPPNDWKQTARA--------CLSG--GDYLL-WKSEFFEQCAR   79 (140)
T ss_dssp             HTCTTSHHHHHHHHHHHTSCCCHHHHHHHHHH--------HSCH--HHHHH-HHHHHHHHHHH
T ss_pred             HhCCCCchHHHHHHHHHhCCCChHHHHHHHHH--------HcCc--chhHH-HHHHHHHHHHH
Confidence            48999998755444432222335799999865        3443  78885 99999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1cf7a_	67	a.4.5.17 (A:) Cell cycle transcription factor E2F-	1e-21

>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (208), Expect = 1e-21
 Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 73  SRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLS 132
           SR EKSLGLLT  FV L   +   ++ L   A  L            + RR+YDI NVL 
Sbjct: 1   SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAV---------RQKRRIYDITNVLE 51

Query: 133 SMNLIEKTHTADTRKPAFRW 152
            + LIEK       K + +W
Sbjct: 52  GIGLIEK-----KSKNSIQW 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1cf7a_	67	Cell cycle transcription factor E2F-4 {Human (Homo	99.94
d1cf7b_	82	Cell cycle transcription factor DP-2 {Human (Homo	99.38
d2azeb1	101	Transcription factor E2F1 {Human (Homo sapiens) [T	94.63
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	83.88
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	81.82

>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-28  Score=184.28  Aligned_cols=66  Identities=45%  Similarity=0.692  Sum_probs=63.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCcccccc-chhhhhhHHHHHhhhhhheecccCCCCCCcEE
Q 042344           73 SRREKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRT-KVRRLYDIANVLSSMNLIEKTHTADTRKPAFR  151 (302)
Q Consensus        73 ~RkdKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kv-kkRRLYDItNVLEgIgLIEK~~~~~~sKn~iq  151 (302)
                      +|+++|||+||++||.||.++|+++++|++||..|          .+ ++||||||||||||||||+|.     +||.|+
T Consensus         1 sR~ekSLglLt~kFl~l~~~~~~~~~~L~~aa~~L----------~v~~kRRiYDI~NVLe~igli~K~-----~Kn~~~   65 (67)
T d1cf7a_           1 SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTL----------AVRQKRRIYDITNVLEGIGLIEKK-----SKNSIQ   65 (67)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHT----------TTCCTHHHHHHHHHHHHHTSEEEE-----ETTEEE
T ss_pred             ChhhhhHHHHHHHHHHHHhhCCCCeeeHHHHHHHh----------cCcchhhHHHHHHHHhhhhhhhcc-----cCCccc
Confidence            59999999999999999999999999999999999          56 799999999999999999999     899999


Q ss_pred             ee
Q 042344          152 WL  153 (302)
Q Consensus       152 Wi  153 (302)
                      |+
T Consensus        66 W~   67 (67)
T d1cf7a_          66 WK   67 (67)
T ss_dssp             EC
T ss_pred             cC
Confidence            95

>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-13  Score=107.00  Aligned_cols=73  Identities=29%  Similarity=0.446  Sum_probs=62.6

Q ss_pred             CCCHHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCC---------ccccccchhhhhhHHHHHhhhhhheecccCCCC
Q 042344           76 EKSLGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHN---------TSVMRTKVRRLYDIANVLSSMNLIEKTHTADTR  146 (302)
Q Consensus        76 dKSLglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~---------~s~~kvkkRRLYDItNVLEgIgLIEK~~~~~~s  146 (302)
                      .++|..++.+.++++...  ++.+.+++|+.|+.+...         ....++.+||+||..|||++||+|+|.      
T Consensus         1 gkgLr~~S~kVcekV~~k--~~TtY~eVAdeLv~e~~~~~~~~~~~~~~d~KNIRRRVYDALNVLmA~~II~K~------   72 (82)
T d1cf7b_           1 GKGLRHFSMKVCEKVQRK--GTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKE------   72 (82)
T ss_dssp             CCHHHHHHHHHHHHHHHH--SEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCCC------
T ss_pred             CccHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhhccCCCcchhhcchhhhHHHHHHHHHHHHHhhhhhc------
Confidence            378999999999999984  689999999999754321         125689999999999999999999997      


Q ss_pred             CCcEEeeccc
Q 042344          147 KPAFRWLGVN  156 (302)
Q Consensus       147 Kn~iqWiG~~  156 (302)
                      |..|+|+|.+
T Consensus        73 kK~I~W~Glp   82 (82)
T d1cf7b_          73 KKEIKWIGLP   82 (82)
T ss_dssp             SSCEEBCCCC
T ss_pred             CceeEeecCC
Confidence            8899999974

>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: E2F dimerization segment
domain: Transcription factor E2F1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.012  Score=45.49  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=29.1

Q ss_pred             HHhhhHHHHHHHHHHHHhHHHHhhhhcchhhhh
Q 042344          172 RKRTFGTDVTNISFKRKRMDTSINGDISQSIKM  204 (302)
Q Consensus       172 ~kr~l~~El~nL~~~E~~LD~~I~~~~~q~~~~  204 (302)
                      +.+.|++||++|+++|+.||++|+.|+++...+
T Consensus         2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~l   34 (101)
T d2azeb1           2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL   34 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457899999999999999999999999875444

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.88  E-value=0.4  Score=35.54  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=32.7

Q ss_pred             ceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheec
Q 042344           96 DMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKT  140 (302)
Q Consensus        96 gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~  140 (302)
                      +.++..+.|+.+          ++.+..+|++.+-|+.-|||+|.
T Consensus        33 g~~t~~eia~~~----------~i~~~~v~~~l~~L~~~GlV~r~   67 (109)
T d1sfxa_          33 GGMRVSEIAREL----------DLSARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             CCBCHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCCHHHHHHHh----------CCCcchHHHHHHHHHhCCCEEEE
Confidence            568999999999          78999999999999999999987

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.82  E-value=1.5  Score=32.91  Aligned_cols=52  Identities=12%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhhCCCceecHHHHHHHHhcCcCCccccccchhhhhhHHHHHhhhhhheecc
Q 042344           79 LGLLTQNFVRLFVCSNVDMITLDEVAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTH  141 (302)
Q Consensus        79 LglLTqkFV~L~l~sp~gvIdLneAA~~L~g~~~~~s~~kvkkRRLYDItNVLEgIgLIEK~~  141 (302)
                      |....-+.+.++..++ +.+++.+.|+.+          ++.+=.+|=+.+.|+..|||.+..
T Consensus        24 l~~~~~~i~~~L~~~~-~plt~~ela~~l----------~vsk~~vs~~l~~L~~~GlV~r~~   75 (151)
T d1ku9a_          24 LNKSVGAVYAILYLSD-KPLTISDIMEEL----------KISKGNVSMSLKKLEELGFVRKVW   75 (151)
T ss_dssp             CCHHHHHHHHHHHHCS-SCEEHHHHHHHH----------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             CCHHHHHHHHHHHhCC-CCcCHHHHHHHh----------CCCcchHHHHHHHHHHCCCEEEEE
Confidence            3344455666666664 459999999999          788889999999999999999884