Citrus Sinensis ID: 042357

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
MFEGKLNLPEKACRAFPDRLGSLAAGFDIKDDRSGKSDSAFESGEELEILKPNGPGSAPESEDDYVEMMEEHFESRVRRNPKKYGSRLVSVKEVIAADDKRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDLSPDTSSCSLSP
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHcccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHccccccccHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccc
mfegklnlpekacrafpdrlgslaagfdikddrsgksdsafesgeeleilkpngpgsapesedDYVEMMEEHFESRvrrnpkkygsRLVSVKEVIaaddkrsdleYEKEINLEKLQRIadtglpdggglRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEElllrpseitrikdevsnyndqnadndvdgplrrqeisqedhplssgkasvWHQYFQHIEIAEQIDRDlqrthpdmkffsgdaafSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMyyvfstdpdeqnaenaeadSFSCFVRLLSDSVDHFCQqldnssggiLSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTllsnpfgiQHMLLRVCCAMLLCMKNRLLSGDFVANLQllqhypdvnIEHLLQVARdlspdtsscslsp
mfegklnlpekaCRAFPDRLGSLAagfdikddrsGKSDSafesgeeleilkpngpgsaPESEDDYVEMMEEHFesrvrrnpkkygsrlvsvkeviaaddkrsdleYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLklkeelllrpseitrikdevsnyndqnadndvdgplRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDlspdtsscslsp
MFEGKLNLPEKACRAFPDRLGSLAAGFDIKDDRSGKSDSAFESGEELEILKPNGPGSAPESEDDYVEMMEEHFESRVRRNPKKYGSRLVSVKEVIAADDKRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYlklkeelllRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDLSPDTSSCSLSP
******************************************************************************************VKEVI**********YEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLR********************************************SVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFST*************SFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVA**************
***************************************************************************************************KRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQE**************YFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLD****GILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDLSPDTS******
MFEGKLNLPEKACRAFPDRLGSLAAGFDIKD************GEELEILKP***********DYVEMMEEHFESRVRRNPKKYGSRLVSVKEVIAADDKRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQNADNDVDGPLRRQE************ASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARD************
****KLNLPEKACRAFPDRL*******************************************************************LVSVKEVIAADDKRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRP************************************PL*SGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDLSPDTSSC****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFEGKLNLPEKACRAFPDRLGSLAAGFDIKDDRSGKSDSAFESGEELEILKPNGPGSAPESEDDYVEMMEEHFESRVRRNPKKYGSRLVSVKEVIAADDKRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCxxxxxxxxxxxxxxxxxxxxxLLLRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDLSPDTSSCSLSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query455 2.2.26 [Sep-21-2011]
Q8R3D1400 TBC1 domain family member yes no 0.747 0.85 0.348 8e-54
Q9NVG8400 TBC1 domain family member yes no 0.413 0.47 0.478 2e-46
Q9URY3 619 TBC domain-containing pro yes no 0.419 0.308 0.378 1e-34
Q92609 795 TBC1 domain family member no no 0.615 0.352 0.277 6e-31
Q80XQ2 815 TBC1 domain family member no no 0.615 0.343 0.277 3e-30
Q9NU19505 TBC1 domain family member no no 0.635 0.572 0.264 5e-23
Q95LL3505 TBC1 domain family member N/A no 0.580 0.522 0.270 5e-23
Q8WUA7517 TBC1 domain family member no no 0.613 0.539 0.269 3e-22
Q95KI1497 TBC1 domain family member N/A no 0.604 0.553 0.271 8e-22
Q54TA5 1016 TBC1 domain family member no no 0.386 0.173 0.327 1e-21
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1 Back     alignment and function desciption
 Score =  211 bits (537), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 134/385 (34%), Positives = 207/385 (53%), Gaps = 45/385 (11%)

Query: 103 DLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKL 162
           D+  E  I LEKL+ ++ +G+P  GGLR   WK+LL YLP  R  W   L + R  Y + 
Sbjct: 14  DVLKEPSIVLEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRGLYSQF 73

Query: 163 KEELLLRP----SEITRIKDEV------------SNYNDQNADNDV----DGPLRR---- 198
             E++++P    + +   +++V            S +N    DN+V    D  +RR    
Sbjct: 74  LREMIIQPGIAKANMGVFREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPD 133

Query: 199 ----QEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSG---DAAFSR 251
               Q  ++    L     + +    + +E      + + R    +   S    ++A S 
Sbjct: 134 ISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNSAPSA 193

Query: 252 KNR------------EAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAEN 299
            N             E +  IL ++AKLNP I YVQGMNE++ P+YY F+TDP+ +  E+
Sbjct: 194 LNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEH 253

Query: 300 AEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIK 359
           AEAD+F CF  L+++  D+F + LD+S  GI   +  +   LK  D EL+  L+    IK
Sbjct: 254 AEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQ-EQSIK 312

Query: 360 PQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDF 419
           PQF+AFRW+TLLL+QEF L  ++RIWD+L ++      +LL VCCAML+ ++ +LL GDF
Sbjct: 313 PQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADGNRFDFLLL-VCCAMLILIREQLLEGDF 371

Query: 420 VANLQLLQHYPDVNIEHLLQVARDL 444
             N++LLQ YP  ++  +LQ A++L
Sbjct: 372 TVNMRLLQDYPITDVCQILQKAKEL 396
May act as a GTPase-activating protein for Rab family protein(s).
Mus musculus (taxid: 10090)
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3 Back     alignment and function description
>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4 SV=4 Back     alignment and function description
>sp|Q92609|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1 Back     alignment and function description
>sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2 Back     alignment and function description
>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3 Back     alignment and function description
>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1 Back     alignment and function description
>sp|Q8WUA7|TB22A_HUMAN TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2 Back     alignment and function description
>sp|Q95KI1|TB22A_MACFA TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis GN=TBC1D22A PE=2 SV=2 Back     alignment and function description
>sp|Q54TA5|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum GN=tbc1d5B PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
225445513487 PREDICTED: TBC1 domain family member 13 0.997 0.932 0.746 0.0
255567037464 conserved hypothetical protein [Ricinus 1.0 0.980 0.713 0.0
297738958434 unnamed protein product [Vitis vinifera] 0.942 0.988 0.747 0.0
224144227457 predicted protein [Populus trichocarpa] 0.964 0.960 0.727 0.0
356546162503 PREDICTED: TBC1 domain family member 13- 0.982 0.888 0.650 1e-170
224090441339 predicted protein [Populus trichocarpa] 0.742 0.997 0.786 1e-158
357478105517 TBC1 domain family member [Medicago trun 0.997 0.878 0.594 1e-153
449442333446 PREDICTED: TBC1 domain family member 13- 0.736 0.751 0.621 1e-123
168001162401 predicted protein [Physcomitrella patens 0.738 0.837 0.614 1e-122
168025163378 predicted protein [Physcomitrella patens 0.813 0.978 0.553 1e-121
>gi|225445513|ref|XP_002282179.1| PREDICTED: TBC1 domain family member 13 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/457 (74%), Positives = 380/457 (83%), Gaps = 3/457 (0%)

Query: 1   MFEGKLNLPEKACRAFPDRLGSLAAGFDIKDDRSGKSDSAFESGEELEILKPNGPGSAPE 60
           M +GKL LPE A RAFPDRLGSL  GFD KDD +G SD  F SGEELE  +PNG G   E
Sbjct: 30  MLKGKLKLPEAARRAFPDRLGSLVMGFDDKDDENGGSDLVFGSGEELETFQPNGFGLDRE 89

Query: 61  SEDDYVEMMEEHFESRVRRNPKKYGSRLVSVKEVIAADDKRSDLEYE---KEINLEKLQR 117
           S++D      +  + R+R+   K G+  VSV E+IAAD+KRSD+ +E   KEINLEKLQR
Sbjct: 90  SDEDEEHKPSDDSDLRIRQRSDKDGASSVSVSEIIAADEKRSDIAFELSQKEINLEKLQR 149

Query: 118 IADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIK 177
           +A  GLPDGGGLRATAWKLLLGYLP+ RDLWEKELTENR KY KLKEELLL P+E TR K
Sbjct: 150 LASLGLPDGGGLRATAWKLLLGYLPASRDLWEKELTENRLKYAKLKEELLLSPAEYTRRK 209

Query: 178 DEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTH 237
            E  +  +Q+ D+  DGPL RQEISQEDHPLS GKAS WH+YFQ  EIAEQIDRDLQRTH
Sbjct: 210 TEALDAMEQDVDSPADGPLTRQEISQEDHPLSLGKASAWHKYFQDTEIAEQIDRDLQRTH 269

Query: 238 PDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNA 297
           PD+KFFSGD++ SRKNREAMR+ILLLFAKLNP IRYVQGMNEVLAP+YY+FSTD DEQNA
Sbjct: 270 PDLKFFSGDSSLSRKNREAMRSILLLFAKLNPAIRYVQGMNEVLAPIYYIFSTDTDEQNA 329

Query: 298 ENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNE 357
           ENAEADSF CFVRLLSDSVDHFCQQLDNSS GI STLS L ELLKANDEELWRHLE+T +
Sbjct: 330 ENAEADSFCCFVRLLSDSVDHFCQQLDNSSVGIHSTLSRLVELLKANDEELWRHLEFTTK 389

Query: 358 IKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSG 417
           + PQFYAFRWITLLLTQEFN   I+RIWDTLLSN FG+Q MLLRVCCAMLLC+K+RLLSG
Sbjct: 390 VNPQFYAFRWITLLLTQEFNFHSIMRIWDTLLSNTFGVQEMLLRVCCAMLLCIKSRLLSG 449

Query: 418 DFVANLQLLQHYPDVNIEHLLQVARDLSPDTSSCSLS 454
           DF ANL+LLQHYP++NIEHLLQVA+DLSPDTSS  LS
Sbjct: 450 DFAANLKLLQHYPEINIEHLLQVAQDLSPDTSSFRLS 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255567037|ref|XP_002524501.1| conserved hypothetical protein [Ricinus communis] gi|223536289|gb|EEF37941.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297738958|emb|CBI28203.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224144227|ref|XP_002325226.1| predicted protein [Populus trichocarpa] gi|222866660|gb|EEF03791.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356546162|ref|XP_003541500.1| PREDICTED: TBC1 domain family member 13-like [Glycine max] Back     alignment and taxonomy information
>gi|224090441|ref|XP_002308987.1| predicted protein [Populus trichocarpa] gi|222854963|gb|EEE92510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357478105|ref|XP_003609338.1| TBC1 domain family member [Medicago truncatula] gi|355510393|gb|AES91535.1| TBC1 domain family member [Medicago truncatula] Back     alignment and taxonomy information
>gi|449442333|ref|XP_004138936.1| PREDICTED: TBC1 domain family member 13-like [Cucumis sativus] gi|449505611|ref|XP_004162521.1| PREDICTED: TBC1 domain family member 13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|168001162|ref|XP_001753284.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695570|gb|EDQ81913.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|168025163|ref|XP_001765104.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683691|gb|EDQ70099.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
TAIR|locus:2119435449 AT4G13730 [Arabidopsis thalian 0.773 0.783 0.549 3.8e-101
DICTYBASE|DDB_G0269052 604 DDB_G0269052 [Dictyostelium di 0.553 0.417 0.453 1.6e-67
UNIPROTKB|Q9NVG8400 TBC1D13 "TBC1 domain family me 0.413 0.47 0.478 9.3e-67
RGD|1591937400 Tbc1d13 "TBC1 domain family, m 0.413 0.47 0.473 1.2e-66
UNIPROTKB|F1MXD4399 TBC1D13 "Uncharacterized prote 0.413 0.471 0.478 1.5e-66
UNIPROTKB|F1RR65400 TBC1D13 "Uncharacterized prote 0.413 0.47 0.478 1.9e-66
UNIPROTKB|E1BXI8399 TBC1D13 "Uncharacterized prote 0.413 0.471 0.473 1.9e-66
ZFIN|ZDB-GENE-080204-86414 tbc1d13 "TBC1 domain family, m 0.382 0.420 0.494 3.9e-66
MGI|MGI:2385326400 Tbc1d13 "TBC1 domain family, m 0.413 0.47 0.473 1e-65
UNIPROTKB|J9NWF3403 TBC1D13 "Uncharacterized prote 0.413 0.466 0.478 9.9e-62
TAIR|locus:2119435 AT4G13730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 196/357 (54%), Positives = 254/357 (71%)

Query:    90 SVKEVIAADDKRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWE 149
             SV++V       ++L  +K I+L++L++IA  GLPD  G+R+  WKLLL YL   R LW 
Sbjct:    93 SVEDVSRKAQVVAELS-KKVIDLKELRKIASQGLPDDAGIRSIVWKLLLDYLSPDRSLWS 151

Query:   150 KELTENRQKYXXXXXXXXXRPSEITRIKDEVSNYNDQNADNDVDGP--LRRQEISQEDHP 207
              EL + R +Y          PSE+TR  D+ S   D N D  ++ P  L R EI+ EDHP
Sbjct:   152 SELAKKRSQYKQFKEELLMNPSEVTRKMDK-SKGGDSN-DPKIESPGALSRSEITHEDHP 209

Query:   208 LSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKL 267
             LS G  S+W+ +F+  E+ EQI+RD+ RTHPDM FFSGD+A ++ N++A++NIL +FAKL
Sbjct:   210 LSLGTTSLWNNFFKDTEVLEQIERDVMRTHPDMHFFSGDSAVAKSNQDALKNILTIFAKL 269

Query:   268 NPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSS 327
             NP IRYVQGMNE+LAP++Y+F  DPD+ NA  AE+D+F CFV L+S   D+FCQQLDNS 
Sbjct:   270 NPGIRYVQGMNEILAPIFYIFKNDPDKGNAAYAESDAFFCFVELMSGFRDNFCQQLDNSV 329

Query:   328 GGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDT 387
              GI  T++ L+ LLK +DEELWRHLE T +I PQFYAFRWITLLLTQEFN    L IWDT
Sbjct:   330 VGIRYTITRLSLLLKHHDEELWRHLEVTTKINPQFYAFRWITLLLTQEFNFVESLHIWDT 389

Query:   388 LLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDL 444
             LLS+P G Q  LLR+CCAML+ ++ RLL+GDF +NL+LLQ+YP  NI H+L VA  L
Sbjct:   390 LLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQNYPPTNISHMLYVADKL 446
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
DICTYBASE|DDB_G0269052 DDB_G0269052 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVG8 TBC1D13 "TBC1 domain family member 13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1591937 Tbc1d13 "TBC1 domain family, member 13" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXD4 TBC1D13 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR65 TBC1D13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXI8 TBC1D13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-86 tbc1d13 "TBC1 domain family, member 13" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2385326 Tbc1d13 "TBC1 domain family, member 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWF3 TBC1D13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016903001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (487 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 4e-39
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 4e-34
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 3e-22
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  139 bits (353), Expect = 4e-39
 Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 22/192 (11%)

Query: 224 EIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAP 283
              EQI++D+ RT P   FF      + + ++ +R IL  ++  NP + Y QGMN + AP
Sbjct: 37  PDEEQIEKDVPRTFPHHFFFK-----NGEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAP 91

Query: 284 MYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKA 343
           +  V             E ++F CFV LL   +  F      S  G+   L    ELLK 
Sbjct: 92  LLLVVLD----------EEEAFWCFVSLLEYLLRDFFLP---SFPGLQRDLYVFEELLKK 138

Query: 344 NDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVC 403
           +D EL++HL+    + P  +A +W   L  +E  L+ +LR+WD  L    G +  L RV 
Sbjct: 139 HDPELYKHLQ-KLGLDPSLFASKWFLTLFARELPLETVLRLWDLFL---EGGKFFLFRVA 194

Query: 404 CAMLLCMKNRLL 415
            A+L   +  LL
Sbjct: 195 LAILKRFRKELL 206

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 455
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG1093 725 consensus Predicted protein kinase (contains TBC a 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.98
KOG2224781 consensus Uncharacterized conserved protein, conta 99.96
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.96
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.95
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.94
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 99.92
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.92
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.81
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.67
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.65
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.97
KOG1648813 consensus Uncharacterized conserved protein, conta 98.46
PF149611296 BROMI: Broad-minded protein 96.73
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-62  Score=455.18  Aligned_cols=321  Identities=49%  Similarity=0.888  Sum_probs=291.4

Q ss_pred             ccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccCCCC
Q 042357          108 KEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDEVSNYNDQN  187 (455)
Q Consensus       108 ~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~  187 (455)
                      ..+|.++||++|..|+|+..++|+.+|+++||++|++.+.|...+.++|..|.++.++....|......       .+. 
T Consensus        21 ~~id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~-------~~v-   92 (370)
T KOG4567|consen   21 DTIDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNS-------KKV-   92 (370)
T ss_pred             chhhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccc-------ccc-
Confidence            359999999999999998767999999999999999999999999999999999999987766532110       000 


Q ss_pred             CCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhh----------------
Q 042357          188 ADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSR----------------  251 (455)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~----------------  251 (455)
                                .+..+..+||++.+..|.|+++|++.+.+.||++||.||+|+..+|+...+.++                
T Consensus        93 ----------~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~  162 (370)
T KOG4567|consen   93 ----------DSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEA  162 (370)
T ss_pred             ----------ccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHh
Confidence                      011246799999999999999999999999999999999999999998765431                


Q ss_pred             ------HHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHcCCcccccccccC
Q 042357          252 ------KNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAENAEADSFSCFVRLLSDSVDHFCQQLDN  325 (455)
Q Consensus       252 ------~~~~~L~rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~~~~~~~E~daF~~f~~l~~~~~~~~~~~~~~  325 (455)
                            -......|||++||+.||.+|||||||+|+||+++|+..|++.++..++|+|||.||..||..++++|+..+|.
T Consensus       163 ~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDd  242 (370)
T KOG4567|consen  163 GRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDD  242 (370)
T ss_pred             hhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccc
Confidence                  12234589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 042357          326 SSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCA  405 (455)
Q Consensus       326 ~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g~~~~~~l~~i~lA  405 (455)
                      +..||...+..+..+|+.+|-+||+||+.. ++.|++|++||+.+|++.+||+++++||||.++++..+ ..+++++|+|
T Consensus       243 S~~GI~~~Msr~~~~lk~~D~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcs  320 (370)
T KOG4567|consen  243 SVGGIHFLMSRLSELLKKHDEELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCS  320 (370)
T ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHH
Confidence            999999999999999999999999999986 99999999999999999999999999999999998765 4999999999


Q ss_pred             HHHHhhHhhhcCCHHHHHHHHhCCCCCCHHHHHHHHhhcCccc
Q 042357          406 MLLCMKNRLLSGDFVANLQLLQHYPDVNIEHLLQVARDLSPDT  448 (455)
Q Consensus       406 iL~~~~~~Ll~~d~~~il~~L~~~p~~d~~~Ll~~A~~l~~~~  448 (455)
                      ||...|+.|++.||...+++||++|++|+.+++..|.+|+...
T Consensus       321 mlil~Re~il~~DF~~nmkLLQ~yp~tdi~~~l~~A~~Lr~~k  363 (370)
T KOG4567|consen  321 MLILVRERILEGDFTVNMKLLQNYPTTDISKMLAVADSLRDKK  363 (370)
T ss_pred             HHHHHHHHHHhcchHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999998643

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 3e-23
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 5e-23
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 5e-20
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 1e-18
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 3e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 6e-04
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 156/364 (42%), Gaps = 85/364 (23%)
Query: 85  GSRLVSVKEVIAADDKRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSC 144
            SRL   K+++A  +           +LE+L+R++ +G+P    +R   WKLL GYLP+ 
Sbjct: 23  ASRLDKFKQLLAGPNT----------DLEELRRLSWSGIPKP--VRPMTWKLLSGYLPAN 70
Query: 145 RDLWEKELTENRQKYXXXXXXXXXRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQE 204
            D                      RP+ + R + E   + +   D+      R  E+ Q+
Sbjct: 71  VD---------------------RRPATLQRKQKEYFAFIEHYYDS------RNDEVHQD 103
Query: 205 DHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLF 264
            +                     QI  D+ R  P+            K  E    IL ++
Sbjct: 104 TY--------------------RQIHIDIPRMSPEALILQP------KVTEIFERILFIW 137
Query: 265 AKLNPVIRYVQGMNEVLAPMYYVF-----------STDPDEQNAE---NAEADSFSCFVR 310
           A  +P   YVQG+N+++ P + VF           + D     AE   N EAD++ C  +
Sbjct: 138 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSK 197
Query: 311 LLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITL 370
           LL    D++      +  GI   +  L EL+   DE++ RHL+  +E++   +AFRW+  
Sbjct: 198 LLDGIQDNYT----FAQPGIQMKVKMLEELVSRIDEQVHRHLD-QHEVRYLQFAFRWMNN 252
Query: 371 LLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLL-SGDFVANLQLLQHY 429
           LL +E  L+  +R+WDT  S P G  H  L VC A L+  +  +L   DF   L  LQ+ 
Sbjct: 253 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312
Query: 430 PDVN 433
           P  +
Sbjct: 313 PTAH 316
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 4e-75
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 4e-71
2qq8_A334 TBC1 domain family member 14; structural genomics 1e-28
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 5e-28
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 4e-24
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
 Score =  237 bits (607), Expect = 4e-75
 Identities = 93/358 (25%), Positives = 143/358 (39%), Gaps = 80/358 (22%)

Query: 108 KEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELL 167
              +LE+L+R++ +G+P    +R   WKLL GYLP+  D     L   +++Y    E   
Sbjct: 36  PNTDLEELRRLSWSGIPKP--VRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYY 93

Query: 168 LRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAE 227
              ++                                                 H +   
Sbjct: 94  DSRNDEV-----------------------------------------------HQDTYR 106

Query: 228 QIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYV 287
           QI  D+ R  P+            K  E    IL ++A  +P   YVQG+N+++ P + V
Sbjct: 107 QIHIDIPRMSPEALILQ------PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVV 160

Query: 288 FSTDPDEQNA--------------ENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILST 333
           F  +  E                  N EAD++ C  +LL    D++         GI   
Sbjct: 161 FICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQP----GIQMK 216

Query: 334 LSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPF 393
           +  L EL+   DE++ RHL+  +E++   +AFRW+  LL +E  L+  +R+WDT  S P 
Sbjct: 217 VKMLEELVSRIDEQVHRHLD-QHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD 275

Query: 394 GIQHMLLRVCCAMLLCMKNRLL-SGDFVANLQLLQHYP-----DVNIEHLLQVARDLS 445
           G  H  L VC A L+  +  +L   DF   L  LQ+ P     D +I  LL  A  L 
Sbjct: 276 GFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLK 333
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=4.4e-54  Score=436.50  Aligned_cols=289  Identities=30%  Similarity=0.533  Sum_probs=252.6

Q ss_pred             ccccccccccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhcc
Q 042357          100 KRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKDE  179 (455)
Q Consensus       100 ~~~~~~~~~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~  179 (455)
                      |...+.....+|.++||+++++|||+.  +|+.||++++|++|.+.+.|+..++++++.|.++++++.....        
T Consensus        11 w~~lL~~~~~~d~~~Lr~l~~~GIP~~--lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~--------   80 (396)
T 1fkm_A           11 FDNILKDKTIINQQDLRQISWNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQH--------   80 (396)
T ss_dssp             HHHHHSSCSBCCHHHHHHHHTTCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSC--------
T ss_pred             HHHHHcCCCCCCHHHHHHHHHcCCCHH--HHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccC--------
Confidence            444333333489999999999999999  9999999999999999999999999999999999987643100        


Q ss_pred             ccccCCCCCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHHH
Q 042357          180 VSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRN  259 (455)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~r  259 (455)
                                                              ..+.+..+||++||+||+|++++|+.+     .+++.|+|
T Consensus        81 ----------------------------------------~~~~~~~~qI~~Dv~RT~p~~~~F~~~-----~~~~~L~r  115 (396)
T 1fkm_A           81 ----------------------------------------SRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQR  115 (396)
T ss_dssp             ----------------------------------------STHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHH
T ss_pred             ----------------------------------------cccHHHHHHHHHHhhhhCCCcccccCc-----hHHHHHHH
Confidence                                                    124677899999999999999999987     89999999


Q ss_pred             HHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCC------------------chhhhhhhhHHHHHHHHHHHcCCcccccc
Q 042357          260 ILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDP------------------DEQNAENAEADSFSCFVRLLSDSVDHFCQ  321 (455)
Q Consensus       260 IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~------------------~~~~~~~~E~daF~~f~~l~~~~~~~~~~  321 (455)
                      ||.+|+.+||++|||||||+|+++|++++..+.                  ..+...++|++|||||+++|+.+.++|..
T Consensus       116 IL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~  195 (396)
T 1fkm_A          116 ILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH  195 (396)
T ss_dssp             HHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST
T ss_pred             HHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999875321                  11233456999999999999998777754


Q ss_pred             cccCChhhHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCchhhhHHHHHHHhcccCChHHHHHHHHHHhcCC---------
Q 042357          322 QLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNP---------  392 (455)
Q Consensus       322 ~~~~~~~~i~~~~~~~~~lL~~~dP~L~~hL~~~~~i~~~~f~~~W~~tlF~~~l~~~~~~riWD~~l~~g---------  392 (455)
                          +++++...+..+..+|+.++|+||+||.+. ++++.+|+++||+|+|+++||++.++||||.||++|         
T Consensus       196 ----~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~-~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~  270 (396)
T 1fkm_A          196 ----GQPGILRQVKNLSQLVKRIDADLYNHFQNE-HVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYS  270 (396)
T ss_dssp             ----TCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-TCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC--------
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhh
Confidence                678999999999999999999999999997 999999999999999999999999999999999987         


Q ss_pred             ------------------------------------------C---------CchhHHHHHHHHHHHHhhHhhhcCCHHH
Q 042357          393 ------------------------------------------F---------GIQHMLLRVCCAMLLCMKNRLLSGDFVA  421 (455)
Q Consensus       393 ------------------------------------------~---------~~~~~l~~i~lAiL~~~~~~Ll~~d~~~  421 (455)
                                                                .         +...+++|+|+|+|..+|++|+++||++
T Consensus       271 ~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~  350 (396)
T 1fkm_A          271 MSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQE  350 (396)
T ss_dssp             ----------------------------------------------------CHHHHHHHHHHHHHHHTHHHHTTCCHHH
T ss_pred             hhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence                                                      1         2247999999999999999999999999


Q ss_pred             HHHHHhCCCCC-----CHHHHHHHHhhcCccc
Q 042357          422 NLQLLQHYPDV-----NIEHLLQVARDLSPDT  448 (455)
Q Consensus       422 il~~L~~~p~~-----d~~~Ll~~A~~l~~~~  448 (455)
                      ++++|+++|..     |++.|++.|..++..+
T Consensus       351 ~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~  382 (396)
T 1fkm_A          351 TITFLQNPPTKDWTETDIEMLLSEAFIWQSLY  382 (396)
T ss_dssp             HHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCcccccHHHHHHHHHHHHHHH
Confidence            99999999973     7999999999876554
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 455
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 4e-24
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 2e-12
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 2e-08
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.3 bits (241), Expect = 4e-24
 Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 73/234 (31%)

Query: 104 LEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLK 163
           L+ +  IN + L++I+  G+P     R   WKLL+GYLP      E  L   R++Y    
Sbjct: 14  LKDKTIINQQDLRQISWNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSL 71

Query: 164 EELLLRPSEITRIKDEVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHI 223
           +                                                 +   Q+ + I
Sbjct: 72  KH------------------------------------------------TFSDQHSRDI 83

Query: 224 EIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMRNILLLFAKLNPVIRYVQGMNEVLAP 283
               QI+ D+ RT+P +  +       +  + +++ IL L+A  +P   YVQG+N+++ P
Sbjct: 84  PTWHQIEIDIPRTNPHIPLY-----QFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTP 138

Query: 284 MYYVFSTDPD------------------EQNAENAEADSFSCFVRLLSDSVDHF 319
            +  F T+                    ++   + EAD+F C  +LL    D++
Sbjct: 139 FFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.85
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-34  Score=262.29  Aligned_cols=167  Identities=29%  Similarity=0.487  Sum_probs=142.9

Q ss_pred             hccccccccccCCHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhc
Q 042357           99 DKRSDLEYEKEINLEKLQRIADTGLPDGGGLRATAWKLLLGYLPSCRDLWEKELTENRQKYLKLKEELLLRPSEITRIKD  178 (455)
Q Consensus        99 ~~~~~~~~~~~i~~~~Lr~l~~~GiP~~~~~R~~vW~~LLg~l~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~  178 (455)
                      +|...+.+.+.++.++||+++++|||+.  +|+.||++++|++|.+.+.|+..+.++++.|..+........        
T Consensus         9 ~~~~~l~~~~~i~~~~lr~l~~~Gip~~--lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--------   78 (194)
T d1fkma1           9 KFDNILKDKTIINQQDLRQISWNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQ--------   78 (194)
T ss_dssp             HHHHHHSSCSBCCHHHHHHHHTTCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSS--------
T ss_pred             HHHHHhcccCCCCHHHHHHHHHcCCChH--HHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcc--------
Confidence            3555555567899999999999999999  999999999999999999999999999999998877643211        


Q ss_pred             cccccCCCCCCCCCCCcccccccccCCCCCCCCCCcchhhccchHHHHHHHHHhhcccCCCCcCCCCcchhhhHHHHHHH
Q 042357          179 EVSNYNDQNADNDVDGPLRRQEISQEDHPLSSGKASVWHQYFQHIEIAEQIDRDLQRTHPDMKFFSGDAAFSRKNREAMR  258 (455)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~~~s~w~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~~~~~~L~  258 (455)
                                                              ...+.+..++|++||+||+|++++|+.+     .+++.|+
T Consensus        79 ----------------------------------------~~~~~~~~~~I~~Dv~RT~~~~~~f~~~-----~~~~~L~  113 (194)
T d1fkma1          79 ----------------------------------------HSRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQ  113 (194)
T ss_dssp             ----------------------------------------CSTHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHH
T ss_pred             ----------------------------------------cccchHHHHHHHHHHHhcCCcccccccc-----hhHHHHH
Confidence                                                    1135677899999999999999999987     8899999


Q ss_pred             HHHHHHHHhCCCCCCCCCchhhHHHHHHHhcCCCch------------------hhhhhhhHHHHHHHHHHHcCCccccc
Q 042357          259 NILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDE------------------QNAENAEADSFSCFVRLLSDSVDHFC  320 (455)
Q Consensus       259 rIL~~y~~~~p~igY~QGm~~i~a~ll~~~~~d~~~------------------~~~~~~E~daF~~f~~l~~~~~~~~~  320 (455)
                      |||.+||.+||++|||||||+|||+|++++..+...                  .....+|+||||||+++|+.+.++|.
T Consensus       114 rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         114 RILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             HHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             HHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence            999999999999999999999999999998653211                  12357899999999999999888774
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure