Citrus Sinensis ID: 042367

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MAQHSETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEAYGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMGSFDEGSGDGEAAANDSE
ccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEcccccccccEEEEccccccccEEEEEEEccEEEEEEEEcccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccHHHHHHHHHcccccHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHcccccEEEEEccccccEEEEEccccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEccccccHHHHHHccccEEEEEEccccccccccccccccccccccc
cccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHccHHHcHcHHcHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEcccccEEEEEEEEcccccccEEEEEEccccEEcccEEEEEEcccEEEEEEEccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHccccccHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHccccEEEEEEEcccEEEEEEEccccccEEEEEEccccccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHccHHHHHHEEEEcHHHHHHccccccccccccc
maqhsetdsnIEMWKMKKLIKTLSavkgdgtslislvvnprdkipRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLyknvpsnglvlftgtgvtedgeekkfahdlvpfkpinsslyvcdssfhteaYGYIIIDGNGTLIGTLCGSSREVVLKFTVdlpkkhgrggqsalRFSRLRVEKRHNYLREAAELATkcfidpatsqpnvtgLILAGSAEFKtelsqsgmfdpcLMAKILKVLDisyggvsgfnQAIELSSDVIANVNVLKEKRVIGKFFEEigqdtgkfvvgvdDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLnkkqeaepsnfkdsaaasdlkvegKMGLLEWLVDHYKQfgcsleivtdksqegsqfcrgfggiggilryqpdmgsfdegsgdgeaaandse
maqhsetdsnieMWKMKKLIKTLsavkgdgtslislvvnprdkiprvTKMLGEEYQNaskikkrmnrQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEAYGYIIIDGNGTLIGTLCGSSREVVLKFTvdlpkkhgrggqsalrfsrlRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFfeeigqdtgkfvVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHlnkkqeaepsnfkdsaaasDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMgsfdegsgdgeaaandse
MAQHSETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEAYGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMGSFDEGSGDGEAAANDSE
************MWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKM*******************VQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEAYGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHL*********************VEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQ*********************
***************MKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTK**********************AAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEAYGYIIIDGNGTLIGTLCGSSREVVLKFT*******************LRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEA*P*NFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMGSFDEGSG**********
********SNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEAYGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPK********ALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMGSFDE*************
******TDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEAYGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKH*RGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMGSFDEG************
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MAQHSETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEAYGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMGSFDEGSGDGEAAANDSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query428 2.2.26 [Sep-21-2011]
Q39097436 Eukaryotic peptide chain yes no 0.995 0.977 0.664 1e-172
Q9LPV8434 Eukaryotic peptide chain no no 0.962 0.949 0.668 1e-172
P35614435 Eukaryotic peptide chain no no 0.971 0.956 0.667 1e-171
Q9VPH7438 Eukaryotic peptide chain yes no 0.971 0.949 0.568 1e-144
Q9GR88435 Eukaryotic peptide chain N/A no 0.953 0.937 0.581 1e-143
Q5U2Q7437 Eukaryotic peptide chain yes no 0.969 0.949 0.580 1e-141
P62497437 Eukaryotic peptide chain yes no 0.969 0.949 0.580 1e-141
Q8BWY3437 Eukaryotic peptide chain yes no 0.969 0.949 0.580 1e-141
P62496437 Eukaryotic peptide chain N/A no 0.969 0.949 0.580 1e-141
P62495437 Eukaryotic peptide chain yes no 0.969 0.949 0.580 1e-141
>sp|Q39097|ERF1X_ARATH Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  605 bits (1560), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 291/438 (66%), Positives = 356/438 (81%), Gaps = 12/438 (2%)

Query: 1   MAQHSETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASK 60
           M   ++ D NIE+WK+KKLIK+L A +G+GTS+ISL++ PRD++ RVTKMLG+EY  AS 
Sbjct: 1   MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60

Query: 61  IKKRMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPIN 120
           IK R+NRQSV  AIT AQ RLKLY  VP NGLVL+TGT V EDG+EKK   D  PF+PIN
Sbjct: 61  IKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKVTIDFEPFRPIN 120

Query: 121 SSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHG 170
           +SLY+CD+ FHTEA          +G+I++DGNGTL GTL G++REV+ KF+VDLPKKHG
Sbjct: 121 ASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHG 180

Query: 171 RGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQS 230
           RGGQSALRF+RLR+EKRHNY+R+ AELAT+ +I+PATSQPNV+GLILAGSA+FKTELSQS
Sbjct: 181 RGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAGSADFKTELSQS 240

Query: 231 GMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTG 290
            MFDP L AKIL V+D+SYGG +GFNQAIELS++++ANV  ++EKR+IGK+FEEI QDTG
Sbjct: 241 DMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTG 300

Query: 291 KFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKD 350
           K+V GV+D++ ALE GAI TLIVWE+LDINRY +K S T   VIKHLNK+QEA   NFK 
Sbjct: 301 KYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNKEQEANTENFKV 360

Query: 351 SAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDM 410
           + +   L VE K+ LLEWL + Y++FGC+LE VT+KSQEGSQFCRGFGGIGGILRYQ DM
Sbjct: 361 ADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDM 420

Query: 411 GSFDEGSGDGEAAANDSE 428
            +FD  S DGEA  +DSE
Sbjct: 421 TAFD--SEDGEALDDDSE 436
Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LPV8|ERF1Y_ARATH Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1 Back     alignment and function description
>sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9VPH7|ERF1_DROME Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2 Back     alignment and function description
>sp|Q9GR88|ERF1_POLMI Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1 Back     alignment and function description
>sp|Q5U2Q7|ERF1_RAT Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3 Back     alignment and function description
>sp|P62497|ERF1_RABIT Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|Q8BWY3|ERF1_MOUSE Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4 Back     alignment and function description
>sp|P62496|ERF1_MESAU Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3 Back     alignment and function description
>sp|P62495|ERF1_HUMAN Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
225460446437 PREDICTED: eukaryotic peptide chain rele 0.983 0.963 0.689 1e-177
147783001437 hypothetical protein VITISV_020937 [Viti 0.983 0.963 0.686 1e-176
356498653437 PREDICTED: eukaryotic peptide chain rele 0.985 0.965 0.687 1e-176
225458331437 PREDICTED: eukaryotic peptide chain rele 0.997 0.977 0.684 1e-176
449448665436 PREDICTED: eukaryotic peptide chain rele 0.995 0.977 0.684 1e-176
307135817436 eukaryotic peptide chain release factor 0.995 0.977 0.687 1e-176
224131368436 predicted protein [Populus trichocarpa] 0.981 0.963 0.691 1e-176
82623383438 eukaryotic peptide chain release factor 0.983 0.961 0.689 1e-176
449445606436 PREDICTED: eukaryotic peptide chain rele 0.995 0.977 0.684 1e-175
449502581436 PREDICTED: LOW QUALITY PROTEIN: eukaryot 0.995 0.977 0.680 1e-175
>gi|225460446|ref|XP_002271656.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/431 (68%), Positives = 362/431 (83%), Gaps = 10/431 (2%)

Query: 1   MAQHSETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASK 60
           MA   ETD NIE+WK+KKLIK L A +G+GTS+ISL++ PRD+I RVTKMLG+E+  AS 
Sbjct: 1   MADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASN 60

Query: 61  IKKRMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPIN 120
           IK R+NRQSV  AIT AQ RLKLY  VP NGLVL+TGT VTEDG+EKK   D  PF+PIN
Sbjct: 61  IKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPIN 120

Query: 121 SSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHG 170
           +SLY+CD+ FHTEA          +G+I++DGNGTL GTL G++REV+ KFTVDLPKKHG
Sbjct: 121 ASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHG 180

Query: 171 RGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQS 230
           RGGQSALRF+RLR+EKRHNY+R+ AELAT+ FI+PATSQPNV+GLILAGSA+FKTELSQS
Sbjct: 181 RGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQS 240

Query: 231 GMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTG 290
            MFDP L AKIL V+D+SYGG +GFNQAIELSS++++NV  ++EKR+IGK+FEEI QDTG
Sbjct: 241 DMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTG 300

Query: 291 KFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKD 350
           K+V GVDD++KALEMGA+ TLIVWE+LDI+RY LK ++T  IVIKHLNK+QE+  S+F+D
Sbjct: 301 KYVFGVDDTLKALEMGAVETLIVWENLDISRYVLKNNITGEIVIKHLNKEQESNQSHFRD 360

Query: 351 SAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDM 410
           +A +++L+V+ KM LLEW  + YK+FGC+LE VT+KSQEGSQFCRGFGGIGGILRYQ DM
Sbjct: 361 TATSAELEVQEKMSLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM 420

Query: 411 GSFDEGSGDGE 421
            SFDE S DGE
Sbjct: 421 RSFDEVSDDGE 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147783001|emb|CAN63440.1| hypothetical protein VITISV_020937 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356498653|ref|XP_003518164.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max] Back     alignment and taxonomy information
>gi|225458331|ref|XP_002283027.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera] gi|147780810|emb|CAN77215.1| hypothetical protein VITISV_036372 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448665|ref|XP_004142086.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135817|gb|ADN33689.1| eukaryotic peptide chain release factor subunit [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|224131368|ref|XP_002321067.1| predicted protein [Populus trichocarpa] gi|222861840|gb|EEE99382.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|82623383|gb|ABB87106.1| eukaryotic peptide chain release factor subunit 1-3-like [Solanum tuberosum] Back     alignment and taxonomy information
>gi|449445606|ref|XP_004140563.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus] gi|449487371|ref|XP_004157593.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449502581|ref|XP_004161683.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic peptide chain release factor subunit 1-3-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
TAIR|locus:2160972436 ERF1-1 "AT5G47880" [Arabidopsi 0.995 0.977 0.664 3.6e-153
TAIR|locus:2010341434 ERF1-2 "AT1G12920" [Arabidopsi 0.983 0.970 0.660 2e-152
TAIR|locus:2088857435 ERF1-3 "AT3G26618" [Arabidopsi 0.983 0.967 0.662 4.1e-152
FB|FBgn0036974438 eRF1 "eukaryotic release facto 0.971 0.949 0.568 4.5e-130
UNIPROTKB|E1BTM1437 ETF1 "Uncharacterized protein" 0.969 0.949 0.580 9.6e-128
UNIPROTKB|Q0VCX5437 ETF1 "Eukaryotic peptide chain 0.969 0.949 0.580 9.6e-128
UNIPROTKB|E2RBM3437 ETF1 "Uncharacterized protein" 0.969 0.949 0.580 9.6e-128
UNIPROTKB|P62495437 ETF1 "Eukaryotic peptide chain 0.969 0.949 0.580 9.6e-128
UNIPROTKB|F2Z505437 ETF1 "Uncharacterized protein" 0.969 0.949 0.580 9.6e-128
MGI|MGI:2385071437 Etf1 "eukaryotic translation t 0.969 0.949 0.580 9.6e-128
TAIR|locus:2160972 ERF1-1 "AT5G47880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
 Identities = 291/438 (66%), Positives = 356/438 (81%)

Query:     1 MAQHSETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASK 60
             M   ++ D NIE+WK+KKLIK+L A +G+GTS+ISL++ PRD++ RVTKMLG+EY  AS 
Sbjct:     1 MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60

Query:    61 IKKRMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPIN 120
             IK R+NRQSV  AIT AQ RLKLY  VP NGLVL+TGT V EDG+EKK   D  PF+PIN
Sbjct:    61 IKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKVTIDFEPFRPIN 120

Query:   121 SSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHG 170
             +SLY+CD+ FHTEA          +G+I++DGNGTL GTL G++REV+ KF+VDLPKKHG
Sbjct:   121 ASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHG 180

Query:   171 RGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQS 230
             RGGQSALRF+RLR+EKRHNY+R+ AELAT+ +I+PATSQPNV+GLILAGSA+FKTELSQS
Sbjct:   181 RGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAGSADFKTELSQS 240

Query:   231 GMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTG 290
              MFDP L AKIL V+D+SYGG +GFNQAIELS++++ANV  ++EKR+IGK+FEEI QDTG
Sbjct:   241 DMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTG 300

Query:   291 KFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKD 350
             K+V GV+D++ ALE GAI TLIVWE+LDINRY +K S T   VIKHLNK+QEA   NFK 
Sbjct:   301 KYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNKEQEANTENFKV 360

Query:   351 SAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDM 410
             + +   L VE K+ LLEWL + Y++FGC+LE VT+KSQEGSQFCRGFGGIGGILRYQ DM
Sbjct:   361 ADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDM 420

Query:   411 GSFDEGSGDGEAAANDSE 428
              +FD  S DGEA  +DSE
Sbjct:   421 TAFD--SEDGEALDDDSE 436
GO:0003747 "translation release factor activity" evidence=IGI;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006415 "translational termination" evidence=IEA;IGI;ISS
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
TAIR|locus:2010341 ERF1-2 "AT1G12920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088857 ERF1-3 "AT3G26618" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0036974 eRF1 "eukaryotic release factor 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTM1 ETF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCX5 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBM3 ETF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62495 ETF1 "Eukaryotic peptide chain release factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z505 ETF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2385071 Etf1 "eukaryotic translation termination factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5JGK6RF1_PYRKONo assigned EC number0.33000.91350.9421yesno
Q39097ERF1X_ARATHNo assigned EC number0.66430.99530.9770yesno
Q8TS00RF12_METACNo assigned EC number0.31050.91120.9397yesno
C5ZZZ5RF1_THESMNo assigned EC number0.32520.91350.9421yesno
P58227RF1_THEVONo assigned EC number0.30190.90420.9258yesno
Q8BWY3ERF1_MOUSENo assigned EC number0.58070.96960.9496yesno
Q5U2Q7ERF1_RATNo assigned EC number0.58070.96960.9496yesno
Q6KZ24RF1_PICTONo assigned EC number0.31280.90420.9439yesno
Q9BMM3ERF1_BLEAMNo assigned EC number0.50350.95090.9334N/Ano
Q5R4C7ERF1_PONABNo assigned EC number0.58070.96960.9496yesno
A6UPD8RF1_METVSNo assigned EC number0.30660.93690.9570yesno
Q8TXB5RF1_METKANo assigned EC number0.30500.91350.9559yesno
Q9VPH7ERF1_DROMENo assigned EC number0.56840.97190.9497yesno
A6VG76RF1_METM7No assigned EC number0.31260.92520.9451yesno
P79063ERF1_SCHPONo assigned EC number0.50350.95790.9468yesno
O59264RF1_PYRHONo assigned EC number0.32240.87850.9016yesno
Q9BMX0ERF1_DICDINo assigned EC number0.55170.98590.9569yesno
P35615ERF1_XENLANo assigned EC number0.57370.96960.9496N/Ano
Q8U0J4RF1_PYRFUNo assigned EC number0.32130.92520.9428yesno
A5ULL8RF1_METS3No assigned EC number0.31140.92050.9563yesno
Q5CG95ERF1_CRYHONo assigned EC number0.55130.95090.9487N/Ano
Q9V151RF1_PYRABNo assigned EC number0.32990.87850.9082yesno
O59948ERF1_PODASNo assigned EC number0.53910.95560.9402yesno
Q5CD97ERF1_DIDNANo assigned EC number0.51500.97420.9542N/Ano
Q5CD95ERF1_BLEMUNo assigned EC number0.50350.95090.9334N/Ano
Q9GR88ERF1_POLMINo assigned EC number0.58190.95320.9379N/Ano
P62498ERF1_XENTRNo assigned EC number0.57610.96960.9496yesno
Q0VCX5ERF1_BOVINNo assigned EC number0.58070.96960.9496yesno
B6YU52RF1_THEONNo assigned EC number0.32760.91350.9421yesno
P12385ERF1_YEASTNo assigned EC number0.51870.95790.9382yesno
P62495ERF1_HUMANNo assigned EC number0.58070.96960.9496yesno
P62497ERF1_RABITNo assigned EC number0.58070.96960.9496yesno
P62496ERF1_MESAUNo assigned EC number0.58070.96960.9496N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00001852001
SubName- Full=Chromosome chr18 scaffold_122, whole genome shotgun sequence; (437 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015835001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (1267 aa)
    ••• 0.531
GSVIVG00038087001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (276 aa)
  •• •  0.517
GSVIVG00017978001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (264 aa)
  •• •  0.515
GSVIVG00037895001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (267 aa)
  •• •  0.514
GSVIVG00028043001
RecName- Full=Ribosomal protein L19; (208 aa)
  •• •  0.506
GSVIVG00023139001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)
• •• •  0.496
GSVIVG00017864001
RecName- Full=Ribosomal protein L19; (183 aa)
  •• •  0.489
GSVIVG00001176001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)
   ••   0.486
GSVIVG00003445001
SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (156 aa)
  •• •  0.436
GSVIVG00024136001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (265 aa)
  •     0.428

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
COG1503411 COG1503, eRF1, Peptide chain release factor 1 (eRF 1e-127
TIGR03676357 TIGR03676, aRF1/eRF1, peptide chain release factor 1e-113
PRK04011411 PRK04011, PRK04011, peptide chain release factor 1 9e-95
pfam03464129 pfam03464, eRF1_2, eRF1 domain 2 1e-34
pfam03465100 pfam03465, eRF1_3, eRF1 domain 3 3e-30
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 2e-28
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 7e-11
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 1e-08
>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  374 bits (963), Expect = e-127
 Identities = 151/417 (36%), Positives = 232/417 (55%), Gaps = 16/417 (3%)

Query: 4   HSETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKK 63
            SE  S  EM+++KKL++ L   +G GT LISL + P  +I  V   L +EY  AS IK 
Sbjct: 1   MSEV-SMHEMYELKKLLEELKKFRGRGTELISLYIPPDRQISDVVNRLRDEYSTASNIKS 59

Query: 64  RMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSL 123
           ++ R++V +AI  A  RLK Y   P NGLVLF G  +   G+ KK    + P +PIN+ L
Sbjct: 60  KVTRKNVLSAIESAMQRLKDYCKTPENGLVLFVGDVLGGGGKTKKVTVVIEPPEPINTFL 119

Query: 124 YVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGG 173
           Y CDS F+ E           YG I++D     IG L G   EV+ + T D+P KH  GG
Sbjct: 120 YRCDSKFYLEPLEEMLEDKDLYGLIVLDRIEATIGLLKGKRIEVLKELTSDVPGKHRAGG 179

Query: 174 QSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMF 233
           QSA RF RL  E  H + ++  E A++ F+  A  +  + G+IL G    K E  +    
Sbjct: 180 QSARRFERLIEEAAHEFYKKVGEAASEAFLPIA--KKELKGIILGGPGPTKEEFVEGDYL 237

Query: 234 DPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFV 293
              L  K+L ++D+SY G SG  + IE + D + +V+ ++EK+++ +FF+E+ +D+G  V
Sbjct: 238 HHELKKKVLGLVDVSYTGESGLRELIEKAEDALKDVDYVREKKLMEEFFKELAKDSGLAV 297

Query: 294 VGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAA 353
            G ++  +ALEMGA+ TL+V EDL+  R   K   T G       ++ E +   F+    
Sbjct: 298 YGEEEVREALEMGAVDTLLVSEDLEKERVTYKCP-TCGYENLKSKREFEQKR--FRCPEC 354

Query: 354 ASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDM 410
            S+++      L++ L +  ++ G  +EI++D + EG+Q  + FGG+  ILRY+ D+
Sbjct: 355 GSEMEEVEVSDLVDELAELAEESGAKVEIISDDTDEGAQLLKAFGGLAAILRYRTDV 411

Length = 411
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>gnl|CDD|235198 PRK04011, PRK04011, peptide chain release factor 1; Provisional Back     alignment and domain information
>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2 Back     alignment and domain information
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3 Back     alignment and domain information
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 428
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 100.0
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 100.0
PRK04011411 peptide chain release factor 1; Provisional 100.0
COG1503411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 100.0
KOG0688431 consensus Peptide chain release factor 1 (eRF1) [T 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 100.0
COG1537352 PelA Predicted RNA-binding proteins [General funct 100.0
KOG2869379 consensus Meiotic cell division protein Pelota/DOM 100.0
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 99.96
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 99.9
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 99.04
PF10116138 Host_attach: Protein required for attachment to ho 97.36
PRK1360084 putative ribosomal protein L7Ae-like; Provisional 95.23
PRK1360282 putative ribosomal protein L7Ae-like; Provisional 94.89
PRK07714100 hypothetical protein; Provisional 94.58
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 94.42
PRK0728398 hypothetical protein; Provisional 94.27
PRK0668382 hypothetical protein; Provisional 93.45
PRK0101899 50S ribosomal protein L30e; Reviewed 92.68
PTZ00106108 60S ribosomal protein L30; Provisional 92.61
COG1358116 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Tr 92.52
PRK1360182 putative L7Ae-like ribosomal protein; Provisional 91.74
TIGR03677117 rpl7ae 50S ribosomal protein L7Ae. Multifunctional 91.64
PRK04175122 rpl7ae 50S ribosomal protein L7Ae; Validated 91.39
PRK05583104 ribosomal protein L7Ae family protein; Provisional 90.87
PRK09190220 hypothetical protein; Provisional 90.67
PF0124895 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G 90.27
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information 
Probab=100.00  E-value=1.1e-89  Score=695.15  Aligned_cols=393  Identities=36%  Similarity=0.580  Sum_probs=373.8

Q ss_pred             HHHHHHHHHHHHhcccCCCceeEEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhcccCCCCCCe
Q 042367           12 EMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKLYKNVPSNG   91 (428)
Q Consensus        12 ~~~~~~~~l~~L~~~~g~~~~lls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~~~~l~~~G   91 (428)
                      |+|++|++|++|++++|+||+|||+|||||++|+.++.++.+||++|+|||||.+|++|+.||+.+..+|+.|+++|+||
T Consensus         1 ~~~~~k~~~~~l~~~~g~gt~lisl~ipp~~~i~~v~~~l~~e~~~a~niks~~~r~~v~~ai~~~~~rlk~~~~~p~nG   80 (403)
T TIGR03676         1 EKYEFKKLLEELKKKKGRGTELISLYIPPDKQISDVVNQLRDEYSQAANIKSKQTRKNVQSAIESIMQRLKLYKKPPENG   80 (403)
T ss_pred             CcchHHHHHHHHHhCcCCCceEEEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhccCCCCCCe
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecccccCCCceeEEEEeecCCCceeeeeeccCCcccccE----------EEEEEEECCcEEEEEEeCCeEEEEEEE
Q 042367           92 LVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSSREVVLKF  161 (428)
Q Consensus        92 ~v~~a~~~~~~~G~~~~htl~i~p~~~v~~~k~~~w~~~~le~----------~~vVvvd~g~A~i~~v~~~~~~~~~~i  161 (428)
                      +++||+.+...+|+++|||++++||.||++++|.||+.||++|          |++|+||+++|.||++++++++.+.++
T Consensus        81 lv~f~g~~~~~~~~~~~~t~~iep~~pi~~~~y~cd~~f~lepL~e~l~~~~~~g~VvvD~~~A~i~~l~g~~~e~~~~i  160 (403)
T TIGR03676        81 LVLFAGMVPTGGGTEKMETYVIEPPEPINTYLYRCDSKFYLEPLEEMLEEKDVYGLIVLDRREATIGLLKGKRIEVLKEL  160 (403)
T ss_pred             EEEEEeeecCCCCceeEEEEEEeCCCceEEEEecCCChHHHHHHHHHhcCCCCEEEEEEecCceEEEEEcCCEEEEEEEE
Confidence            9999999887678999999999999999999999999999999          999999999999999999999999999


Q ss_pred             EecCCccCCCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCCChhhhcce
Q 042367          162 TVDLPKKHGRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFDPCLMAKI  241 (428)
Q Consensus       162 ~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l~~~l~~~v  241 (428)
                      ++++|+||++||||+.||+|++++.+++||++||+.+.++|++  .+..++++||||||+++|++|.+.++|++++++++
T Consensus       161 ~~~vp~K~~~GGqS~~Rf~R~~e~~~~~f~~~Vae~~~~~f~~--~~~~~v~~lILaGpg~~K~~f~~~~~L~~~l~~kv  238 (403)
T TIGR03676       161 TSGVPGKHRAGGQSARRFERLIEIAAHEFYKRVGEAANEAFLP--LKDKKLKGILIGGPGPTKEEFAEGDYLHHELKKKI  238 (403)
T ss_pred             EeeCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccEEEEeCCHHHHHHHhhhhhhhHHHHhhE
Confidence            9999999999999999999999999999999999999999864  33347999999999999999997668999999998


Q ss_pred             eEEEECCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCcccc
Q 042367          242 LKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINR  321 (428)
Q Consensus       242 i~~v~~~~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~  321 (428)
                      +.++++++++.+|++|+++++.++|++.++++|.++|++|++++++++|++|||+++|++|+++|||+||||+|++...|
T Consensus       239 i~~vd~s~~~~~Gl~Evl~~~~~~L~~~k~~~E~~lle~f~~el~~d~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r  318 (403)
T TIGR03676       239 LGLFDVSYTGESGLRELVEKAEDLLKDLELMKEKKLMERFFKELVKDGGLAAYGEEEVRKALEMGAVDTLLISEDLRKIR  318 (403)
T ss_pred             EEEEecCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHHhCCCcEEEEEcccccee
Confidence            89999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             ceeecCCCCceEEEecccccccCCCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEE
Q 042367          322 YELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIG  401 (428)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIa  401 (428)
                      +.|+|++|+...+.++.|.+....  ..||.||+++.+.++++.+++|++.|+++||+|+|||++|++|.||+++|||||
T Consensus       319 ~~~rc~~c~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ve~L~e~a~~~Ga~V~~iS~~~eeG~ql~~~fGGIa  396 (403)
T TIGR03676       319 VTFKCPNCGYEEEKTVKPEEGDKS--EACPKCGSELEIVEEEDIIEELSELAEESGAKVEIISTDTEEGEQLLKAFGGIA  396 (403)
T ss_pred             EEEEcCCCCcceeeeccccccccc--ccCcccCcccccchhhhHHHHHHHHHHHcCCEEEEECCCChhHHHHHHcCCcEE
Confidence            999999999888888877764322  579999999999889999999999999999999999999999999778999999


Q ss_pred             EEecccC
Q 042367          402 GILRYQP  408 (428)
Q Consensus       402 AiLRf~i  408 (428)
                      ||||||+
T Consensus       397 AiLRy~i  403 (403)
T TIGR03676       397 AILRYRV  403 (403)
T ss_pred             EEEecCC
Confidence            9999996

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ] Back     alignment and domain information
>PRK13600 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK13602 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK07714 hypothetical protein; Provisional Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>PRK07283 hypothetical protein; Provisional Back     alignment and domain information
>PRK06683 hypothetical protein; Provisional Back     alignment and domain information
>PRK01018 50S ribosomal protein L30e; Reviewed Back     alignment and domain information
>PTZ00106 60S ribosomal protein L30; Provisional Back     alignment and domain information
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13601 putative L7Ae-like ribosomal protein; Provisional Back     alignment and domain information
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae Back     alignment and domain information
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>PRK05583 ribosomal protein L7Ae family protein; Provisional Back     alignment and domain information
>PRK09190 hypothetical protein; Provisional Back     alignment and domain information
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
3e1y_A451 Crystal Structure Of Human Erf1ERF3 COMPLEX Length 1e-143
1dt9_A437 The Crystal Structure Of Human Eukaryotic Release F 1e-143
3j2k_6411 Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ 1e-141
3e20_C441 Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Lengt 1e-122
2hst_A143 Solution Structure Of The Middle Domain Of Human Eu 6e-48
2llx_A150 Solution Structure Of The N-Terminal Domain Of Huma 7e-43
2lgt_A144 Backbone 1h, 13c, And 15n Chemical Shift Assignment 2e-41
2ktu_A170 Human Erf1 C-Domain, "closed" Conformer Length = 17 7e-40
3agk_A373 Crystal Structure Of Archaeal Translation Terminati 3e-31
3ir9_A166 C-Terminal Domain Of Peptide Chain Release Factor F 9e-08
3j15_A357 Model Of Ribosome-Bound Archaeal Pelota And Abce1 L 8e-04
>pdb|3E1Y|A Chain A, Crystal Structure Of Human Erf1ERF3 COMPLEX Length = 451 Back     alignment and structure 
Iteration: 1

 Score =  503 bits (1296), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/427 (58%), Positives = 322/427 (75%), Gaps = 12/427 (2%)
Query: 5   SETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKR 64
           S  D N+E+WK+KKLIK+L A +G+GTS+ISL++ P+D+I RV KML +E+  AS IK R
Sbjct: 20  SAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSR 79
Query: 65  MNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLY 124
           +NR SV  AIT  Q RLKLY  VP NGLV++ GT VTE+G+EKK   D  PFKPIN+SLY
Sbjct: 80  VNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLY 139
Query: 125 VCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKHGRGGQ 174
           +CD+ FHTEA          +G+I+IDG+G L GTL G++REV+ KFTVDLPKKHGRGGQ
Sbjct: 140 LCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQ 199
Query: 175 SALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMFD 234
           SALRF+RLR+EKRHNY+R+ AE A + FI  +  + NV GL+LAGSA+FKTELSQS MFD
Sbjct: 200 SALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFD 257
Query: 235 PCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVV 294
             L +K+LK++DISYGG +GFNQAIELS++V++NV  ++EK++IG++F+EI QDTGK+  
Sbjct: 258 QRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCF 317
Query: 295 GVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFKDSAAA 354
           GV+D++KALEMGA+  LIV+E+LDI RY L    T    I +L  +QE + S+F D    
Sbjct: 318 GVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETG 377
Query: 355 SDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMGSFD 414
            + ++   M LLEW  ++YK+FG +LEIVTDKSQEGSQF +GFGGIGGILRY+ D    +
Sbjct: 378 QEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGME 437
Query: 415 EGSGDGE 421
              GD E
Sbjct: 438 YQGGDDE 444
>pdb|1DT9|A Chain A, The Crystal Structure Of Human Eukaryotic Release Factor Erf1-Mechanism Of Stop Codon Recognition And Peptidyl-Trna Hydrolysis Length = 437 Back     alignment and structure
>pdb|3J2K|6 Chain 6, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 411 Back     alignment and structure
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX Length = 441 Back     alignment and structure
>pdb|2HST|A Chain A, Solution Structure Of The Middle Domain Of Human Eukaryotic Translation Termination Factor Erf1 Length = 143 Back     alignment and structure
>pdb|2LLX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Polypeptide Chain Release Factor Erf1 Length = 150 Back     alignment and structure
>pdb|2LGT|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For Qfm(Y)f Length = 144 Back     alignment and structure
>pdb|2KTU|A Chain A, Human Erf1 C-Domain, "closed" Conformer Length = 170 Back     alignment and structure
>pdb|3AGK|A Chain A, Crystal Structure Of Archaeal Translation Termination Factor, Arf1 Length = 373 Back     alignment and structure
>pdb|3IR9|A Chain A, C-Terminal Domain Of Peptide Chain Release Factor From Methanosarcina Mazei. Length = 166 Back     alignment and structure
>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 357 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 1e-123
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 1e-123
3agk_A373 Peptide chain release factor subunit 1; translatio 6e-85
3ir9_A166 Peptide chain release factor subunit 1; structural 7e-51
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 1e-50
2vgn_A386 DOM34; translation termination factor, protein bio 3e-50
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 8e-46
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 1e-43
3agj_B358 Protein pelota homolog; GTP binding, translation-h 4e-41
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 2e-39
2qi2_A347 Pelota, cell division protein pelota related prote 7e-34
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 9e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437 Back     alignment and structure
 Score =  364 bits (935), Expect = e-123
 Identities = 251/437 (57%), Positives = 324/437 (74%), Gaps = 13/437 (2%)

Query: 1   MA-QHSETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNAS 59
           MA   S  D N+E+WK+KKLIK+L A +G+GTS+ISL++ P+D+I RV KML +E+  AS
Sbjct: 1   MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60

Query: 60  KIKKRMNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPI 119
            IK R+NR SV  AIT  Q RLKLY  VP NGLV++ GT VTE+G+EKK   D  PFKPI
Sbjct: 61  NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120

Query: 120 NSSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGSSREVVLKFTVDLPKKH 169
           N+SLY+CD+ FHTEA          +G+I+IDG+G L GTL G++REV+ KFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180

Query: 170 GRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQ 229
           GRGGQSALRF+RLR+EKRHNY+R+ AE A + FI     + NV GL+LAGSA+FKTELSQ
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFIS--GDKVNVAGLVLAGSADFKTELSQ 238

Query: 230 SGMFDPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDT 289
           S MFD  L +K+LK++DISYGG +GFNQAIELS++V++NV  ++EK++IG++F+EI QDT
Sbjct: 239 SDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDT 298

Query: 290 GKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSNFK 349
           GK+  GV+D++KALEMGA+  LIV+E+LDI RY L    T    I +L  +QE + S+F 
Sbjct: 299 GKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFT 358

Query: 350 DSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPD 409
           D     + ++   M LLEW  ++YK+FG +LEIVTDKSQEGSQF +GFGGIGGILRY+ D
Sbjct: 359 DKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVD 418

Query: 410 MGSFDEGSGDGEAAAND 426
               +   GD E    D
Sbjct: 419 FQGMEYQGGDDEFFDLD 435
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Length = 166 Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 100.0
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 100.0
3agk_A373 Peptide chain release factor subunit 1; translatio 100.0
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
2vgn_A386 DOM34; translation termination factor, protein bio 100.0
3agj_B358 Protein pelota homolog; GTP binding, translation-h 100.0
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 100.0
2qi2_A347 Pelota, cell division protein pelota related prote 100.0
3ir9_A166 Peptide chain release factor subunit 1; structural 100.0
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 99.95
3j21_Z99 50S ribosomal protein L30E; archaea, archaeal, KIN 94.87
3v7q_A101 Probable ribosomal protein YLXQ; L7AE superfamily, 94.43
3on1_A101 BH2414 protein; structural genomics, PSI-2, protei 94.39
3iz5_f112 60S ribosomal protein L30 (L30E); eukaryotic ribos 93.86
2lbw_A121 H/ACA ribonucleoprotein complex subunit 2; L7AE, s 93.77
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 93.62
4a18_G104 RPL30; ribosome, eukaryotic initiation factor 6, E 93.35
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 92.88
2xzm_U126 Ribosomal protein L7AE containing protein; ribosom 92.39
1w41_A101 50S ribosomal protein L30E; electrostatic interact 92.29
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 91.91
2ale_A134 SNU13, NHP2/L7AE family protein YEL026W; splicing, 91.86
3cpq_A110 50S ribosomal protein L30E; RNA-protein, elongatio 91.49
3u5e_c105 L32, RP73, YL38, 60S ribosomal protein L30; transl 90.88
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 89.46
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 88.77
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 88.69
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 88.18
3vi6_A125 60S ribosomal protein L30; three-layer alpha/beta/ 83.48
2jnb_A144 NHP2-like protein 1; splicing, KINK-turn RNA-bindi 82.7
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 81.66
3jyw_G113 60S ribosomal protein L8(A); eukaryotic ribosome, 81.34
3u5c_M143 40S ribosomal protein S12, 40S ribosomal protein S 80.87
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=8.1e-89  Score=696.55  Aligned_cols=412  Identities=52%  Similarity=0.906  Sum_probs=238.3

Q ss_pred             Ccch-hhHHHHHHHHHHHHHhcccCCCceeEEEEeCCCCcccccchhhhhhhcccccccccccchhhhhhHHHHHHhhcc
Q 042367            5 SETD-SNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKRMNRQSVQAAITYAQSRLKL   83 (428)
Q Consensus         5 ~~~~-~~~~~~~~~~~l~~L~~~~g~~~~lls~~i~~gd~v~~~t~r~~~e~~~~~~ik~~~~r~~v~~~i~v~~~~~~~   83 (428)
                      +||+ +++|+|++|++|+.|++++|+||+|||+||||+++|+.++.++.+||++|+|||||.+|.+++.+|+.+..+++.
T Consensus        10 ~~~~~~~~~~~~~k~~i~~l~~~~g~gt~lisl~ipp~~~i~~v~~~l~~e~~~asnIksk~~r~~v~~ai~s~~~rlkl   89 (441)
T 3e20_C           10 SETAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKL   89 (441)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhccchhhHHHHHHHHHhh
Confidence            3444 699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCeEEEEecccccCCCceeEEEEeecCCCceeeeeeccCCcccccE----------EEEEEEECCcEEEEEEeCC
Q 042367           84 YKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLYVCDSSFHTEA----------YGYIIIDGNGTLIGTLCGS  153 (428)
Q Consensus        84 ~~~l~~~G~v~~a~~~~~~~G~~~~htl~i~p~~~v~~~k~~~w~~~~le~----------~~vVvvd~g~A~i~~v~~~  153 (428)
                      +.++|.+|+++||+..+...|+.++||++|+||.||+++||.||++|+++|          +++|+||+++|.++++.++
T Consensus        90 ~~~vp~~g~v~~~G~~~~e~~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~~~gvVvvD~~ga~i~~l~g~  169 (441)
T 3e20_C           90 YNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGS  169 (441)
T ss_dssp             CSSCTTSCCEEEEEEECCGGGCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC------------------------
T ss_pred             hccCCCCCEEEEeceeeccCCceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccCcEEEEEEecCCeEEEEEecC
Confidence            999999999999998764344559999999999999999999999999998          9999999999999999999


Q ss_pred             eEEEEEEEEecCCccCCCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcceEEEecChhhHHHHhhcCCC
Q 042367          154 SREVVLKFTVDLPKKHGRGGQSALRFSRLRVEKRHNYLREAAELATKCFIDPATSQPNVTGLILAGSAEFKTELSQSGMF  233 (428)
Q Consensus       154 ~~~~~~~i~~~vp~K~~~gG~s~~Rf~r~~ee~~~~f~~~Vae~l~~~~~~~~~~~~~~~~iVlaGpg~~k~~f~~~~~l  233 (428)
                      +++++.+++.++|+||++||||+.||+|++++++++||++|++.+.++|..  .++.++++|||||||++|++|.++++|
T Consensus       170 ~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~--~~~~~v~~lVlaGPg~~k~~f~~~~~l  247 (441)
T 3e20_C          170 AREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFIT--DDKPNVAGIVLAGSADFKTELGQSDLF  247 (441)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccCcCEEEEECCHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999853  235789999999999999999987789


Q ss_pred             ChhhhcceeEEEECCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEe
Q 042367          234 DPCLMAKILKVLDISYGGVSGFNQAIELSSDVIANVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIV  313 (428)
Q Consensus       234 ~~~l~~~vi~~v~~~~~~~~gl~Evl~~~~~~l~~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv  313 (428)
                      +++|+++++.++++|+++++|++|+++++.++|+++++++|.++|++|++++++++|++|||+++|.+|+++|||+||||
T Consensus       248 ~~~L~~kvv~~vdvs~gg~~Gl~EvL~~~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI  327 (441)
T 3e20_C          248 DQRLQSRIIKTVDVSYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLC  327 (441)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEE
T ss_pred             CHHHHhheEEEEECCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEE
Confidence            99999998788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCccccceeecCCCCceEEEecccccccC---CCCCCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchh
Q 042367          314 WEDLDINRYELKQSVTNGIVIKHLNKKQEAE---PSNFKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEG  390 (428)
Q Consensus       314 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G  390 (428)
                      +|++...|++++|++|.. .+.++.|++..+   .+.+.||.||.+|++++++++++||++.|+++||+|+|||+.|++|
T Consensus       328 sD~l~~~r~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG  406 (441)
T 3e20_C          328 FADLDMIRYEFKNSEGNP-VITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEG  406 (441)
T ss_dssp             ETTCCCEEC-----------CCEECSCTTTCCC-----------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHH
T ss_pred             ecccccceeEEECCCCce-EEEecCccccccccccccccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHH
Confidence            999999999999999863 456788886433   3456899999999999999999999999999999999999999999


Q ss_pred             hhhhcccccEEEEecccCCCCCccCCCCC
Q 042367          391 SQFCRGFGGIGGILRYQPDMGSFDEGSGD  419 (428)
Q Consensus       391 ~q~L~~lgGIaAiLRf~i~~~~~~~~~~~  419 (428)
                      .||+++|||||||||||++++.+.++|||
T Consensus       407 ~ql~~~fgGIaaiLRy~~~~~~~~~~~~~  435 (441)
T 3e20_C          407 MQFVKGFGGIGAVMRYQLDLSMLDPESDE  435 (441)
T ss_dssp             HHHHHTSTTEEEECSSCCCCCSSCSSCCC
T ss_pred             HHHHHcCCcEEEEEeccCChHHhcccccc
Confidence            99889999999999999999888876644
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis} Back     alignment and structure
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Back     alignment and structure
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Back     alignment and structure
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6 Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U Back     alignment and structure
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Back     alignment and structure
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A Back     alignment and structure
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Back     alignment and structure
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Back     alignment and structure
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C Back     alignment and structure
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1 Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G Back     alignment and structure
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 428
d1dt9a3138 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic 2e-58
d1dt9a2146 d.79.3.2 (A:277-422) C-terminal domain of eukaryot 4e-51
d1dt9a1134 c.55.4.2 (A:143-276) Middle domain of eukaryotic p 5e-50
d1x52a1111 d.79.3.2 (A:8-118) Cell division protein pelota {H 3e-25
d2vgna3104 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi 1e-23
d2qi2a395 d.79.3.2 (A:244-338) Cell division protein pelota 3e-20
d2vgna2142 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi 4e-12
d2qi2a2117 c.55.4.2 (A:127-243) Cell division protein pelota 4e-09
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
superfamily: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
family: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
domain: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  185 bits (472), Expect = 2e-58
 Identities = 80/137 (58%), Positives = 103/137 (75%)

Query: 5   SETDSNIEMWKMKKLIKTLSAVKGDGTSLISLVVNPRDKIPRVTKMLGEEYQNASKIKKR 64
           S  D N+E+WK+KKLIK+L A +G+GTS+ISL++ P+D+I RV KML +E+  AS IK R
Sbjct: 2   SAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSR 61

Query: 65  MNRQSVQAAITYAQSRLKLYKNVPSNGLVLFTGTGVTEDGEEKKFAHDLVPFKPINSSLY 124
           +NR SV  AIT  Q RLKLY  VP NGLV++ GT VTE+G+EKK   D  PFKPIN+SLY
Sbjct: 62  VNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLY 121

Query: 125 VCDSSFHTEAYGYIIID 141
           +CD+ FHTEA   ++ D
Sbjct: 122 LCDNKFHTEALTALLSD 138
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104 Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95 Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142 Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 100.0
d1dt9a3138 N-terminal domain of eukaryotic peptide chain rele 99.97
d1dt9a1134 Middle domain of eukaryotic peptide chain release 99.96
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 99.95
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.95
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 99.93
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.85
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 99.74
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 99.23
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.13
d1t0kb_97 Eukaryotic ribosomal protein L30 (L30e) {Baker's y 94.14
d1xbia1115 Ribosomal protein L7ae {Archaeon Methanococcus jan 92.91
d1w3ex198 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 92.84
d1vqof1119 Ribosomal protein L7ae {Archaeon Haloarcula marism 92.27
d2bo1a1100 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 91.81
d2aifa1115 Ribosomal protein L7ae {Cryptosporidium parvum [Ta 91.8
d2fc3a1124 Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5 91.42
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 90.78
d1rlga_113 Ribosomal protein L7ae {Archaeon Archaeoglobus ful 90.53
d2alea1126 Small nuclear ribonucleoprotein-associated protein 89.88
d2ozba1125 Spliceosomal 15.5kd protein {Human (Homo sapiens) 86.86
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-36  Score=260.80  Aligned_cols=146  Identities=53%  Similarity=0.897  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceEecHHHHHHHHHccCccEEEeeccCccccceeecCCCCceEEEecccccccCCCC
Q 042367          268 NVNVLKEKRVIGKFFEEIGQDTGKFVVGVDDSVKALEMGAIHTLIVWEDLDINRYELKQSVTNGIVIKHLNKKQEAEPSN  347 (428)
Q Consensus       268 ~~~~~~e~~ll~~f~~~l~~~~g~a~yG~~~V~~Al~~GaV~tLLv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (428)
                      |+++.+|+++|++|++++.+++|+++||+++|++|+++|||+||||+|++...|+.++|+.|+...+.++.|.+.+.+..
T Consensus         1 d~k~~~Ekklv~~f~~el~~d~g~a~YG~~ev~~ALe~GAVetLLise~L~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~   80 (146)
T d1dt9a2           1 NVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSH   80 (146)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCC
T ss_pred             CchHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEeeeeecccceEEEEcCCCCceEEEEeCccccccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999987888888888777788


Q ss_pred             CCCccccccchhhhhhcHHHHHHHHHHhcCCEEEEECCCCchhhhhhcccccEEEEecccCCCCCc
Q 042367          348 FKDSAAASDLKVEGKMGLLEWLVDHYKQFGCSLEIVTDKSQEGSQFCRGFGGIGGILRYQPDMGSF  413 (428)
Q Consensus       348 ~~c~~~g~~~~~~~~~~~v~~L~~~a~~~ga~V~ivs~~~~~G~q~L~~lgGIaAiLRf~i~~~~~  413 (428)
                      +.||.||.+++.++..+++++|++.|+++|++|+|||++|++|.||+++|||||||||||++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~lie~l~e~a~~~g~~v~iiS~~~eeG~ql~~~fGGiaAiLRy~i~~~~~  146 (146)
T d1dt9a2          81 FTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGM  146 (146)
T ss_dssp             CC-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHHHHHTTTTEEEECSSCCCCCCC
T ss_pred             ccCcccccchhhhhhhhHHHHHHHHHHHcCCeEEEEcCCCHhHHHHHHhCCCEEEEEEcccccccC
Confidence            899999999999999999999999999999999999999999999779999999999999998654
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2alea1 d.79.3.1 (A:1-126) Small nuclear ribonucleoprotein-associated protein 1, Snu13p {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure