Citrus Sinensis ID: 042372

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
Protein Sequence
DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEELSGEDKEIAAVTNGIATNGKHEHEDSQMV
Secondary Structure (PSIPRED)
ccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHEEEEEHHHHcccHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFlhvynapafnrnhvlsaqpqgDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTdinvatsaypapvspeastyglfSKEFVQKHglhllgttstwFLLDIAFYTInltqkdiypatgIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARydslrgkkcdakkdplheycdgnhAWFMILYGLTLFfanfgpnsttfivpaelfparLRSTCHGISAAAGKAGAIVGAFGVQyytqkgdkQIKQSIIALAVVNFLGFLCSfmvpetnglsleelsgedkEIAAVTNGiatngkhehedsqmv
Flexible Loop (DISEMBL)
DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEELSGEDKEIAAVTNGIatngkhehedsqmv
Low Complexity Region (SEG)
DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHgisaaagkagaivgafgvQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEELSGEDKEIAAVTNGIATNGKHEHEDSQMV
Disordered region (IsUnstruct)
******VIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGL*********************************
Disordered Region (DISOPRED)
DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKV************************LFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEEL****************************
Disordered Region (DISEMBL)
DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEELSGEDKEIAAVTNGIATNG**********
Disordered Region (DISPRO)
DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKK**AK*DPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNG**********************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEELSGEDKEIAAVTNGIATNGKHEHEDSQMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	402	2.2.26 [Sep-21-2011]
Q8VYM2	524	Inorganic phosphate trans	yes	no	0.900	0.690	0.603	1e-126
Q94DB8	555	Inorganic phosphate trans	yes	no	0.895	0.648	0.594	1e-125
O48639	521	Probable inorganic phosph	no	no	0.900	0.694	0.592	1e-125
Q8GYF4	542	Probable inorganic phosph	no	no	0.910	0.675	0.586	1e-125
Q7XDZ7	526	Probable inorganic phosph	no	no	0.905	0.692	0.574	1e-121
Q8GSD9	528	Inorganic phosphate trans	no	no	0.902	0.687	0.560	1e-121
Q8H6H2	538	Probable inorganic phosph	no	no	0.930	0.695	0.563	1e-120
Q01MW8	538	Probable inorganic phosph	N/A	no	0.905	0.676	0.570	1e-120
Q7X7V2	548	Probable inorganic phosph	no	no	0.925	0.678	0.565	1e-119
Q8H6H0	534	Inorganic phosphate trans	no	no	0.885	0.666	0.555	1e-116

>sp|Q8VYM2|PHT11_ARATH Inorganic phosphate transporter 1-1 OS=Arabidopsis thaliana GN=PHT1-1 PE=1 SV=2

 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/388 (60%), Positives = 275/388 (70%), Gaps = 26/388 (6%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYANK+TRGAFIAAVFAMQG+GIL  G ++L  S IF   + AP +  N 
Sbjct: 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGGFVALAVSSIFDKKFPAPTYAVNR 203

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
            LS  PQ DY+WRI++MFGA+PAALTYYWRMKMPETARYTALV  N K+A  DM+KVL T
Sbjct: 204 ALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPETARYTALVAKNIKQATADMSKVLQT 263

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           DI +          P+   YGLFSKEF+++HGLHLLGTTSTWFLLDIAFY+ NL QKDI+
Sbjct: 264 DIELEERVEDDVKDPK-QNYGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIF 322

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
            A G + KAA M+A  EVFRI++A  L+AL +TVPGYWFTV  ID IGRF IQL GF +M
Sbjct: 323 SAIGWIPKAATMNATHEVFRIARAQTLIALCSTVPGYWFTVAFIDTIGRFKIQLNGFFMM 382

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           ++ M  +   Y+              H     N   F+++Y LT FFANFGPN+TTFIVP
Sbjct: 383 TVFMFAIAFPYN--------------HWIKPENRIGFVVMYSLTFFFANFGPNATTFIVP 428

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-----------IKQSIIAL 349
           AE+FPARLRSTCHGISAAAGKAGAIVGAFG  Y  Q  DK            +K S+I L
Sbjct: 429 AEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDKAKVDAGYPPGIGVKNSLIML 488

Query: 350 AVVNFLGFLCSFMVPETNGLSLEELSGE 377
            V+NF+G L +F+VPE  G SLEELSGE
Sbjct: 489 GVLNFIGMLFTFLVPEPKGKSLEELSGE 516

High-affinity transporter for external inorganic phosphate. Acts as a H(+):phosphate symporter in both low- and high-Pi conditions. Confers sensitivity to arsenate.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94DB8|PT111_ORYSJ Inorganic phosphate transporter 1-11 OS=Oryza sativa subsp. japonica GN=PHT1-11 PE=2 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/380 (59%), Positives = 277/380 (72%), Gaps = 20/380 (5%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEY+NK+TRGAFIAAVFAMQG+GI+FAG++S+I S IFL    AP++  NH
Sbjct: 150 DYPLSATIMSEYSNKKTRGAFIAAVFAMQGVGIIFAGLVSMIVSSIFLTYNKAPSYKGNH 209

Query: 61  VLSAQ-PQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLD 119
            LS Q P  DY+WRIVLM GA PA  T+YWRMKMPETARYTA+++GN K+AA DM KVL 
Sbjct: 210 DLSRQMPAADYVWRIVLMIGAFPALATFYWRMKMPETARYTAIIDGNAKQAANDMQKVLS 269

Query: 120 TDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDI 179
            +I              A+ Y L S EF ++HGLHL+GTT+TWFLLDIAFY+ NLTQKDI
Sbjct: 270 IEIEAEQEKLAK--FNAANNYPLLSMEFARRHGLHLIGTTTTWFLLDIAFYSQNLTQKDI 327

Query: 180 YPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239
           +PA G++  AA ++A+ E+F+ISKA FLVAL  T PGYW TV LID++GR++IQL GF +
Sbjct: 328 FPAMGLISGAAEVNALTEMFQISKASFLVALLGTFPGYWVTVALIDKMGRYMIQLIGFFM 387

Query: 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299
           MS+ M  +G  YD                Y   +H  F +LY LT FFANFGPNSTTF++
Sbjct: 388 MSMFMLAMGILYD----------------YLKTHHFLFGLLYALTFFFANFGPNSTTFVL 431

Query: 300 PAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD-KQIKQSIIALAVVNFLGFL 358
           PAELFP R+RSTCH ISAAAGKAGAIV AFG+Q  T     K IK+++I L++ N LGF 
Sbjct: 432 PAELFPTRVRSTCHAISAAAGKAGAIVAAFGIQKLTYNSQVKSIKKALIILSITNMLGFF 491

Query: 359 CSFMVPETNGLSLEELSGED 378
            +F+VPET G SLEE+SGED
Sbjct: 492 FTFLVPETMGRSLEEISGED 511

Symbiosis-specific regulated inorganic phosphate (Pi) transporter. Probably involved in symbiosis-mediated Pi uptake in roots colonized by myccorhizal fungi.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O48639|PHT13_ARATH Probable inorganic phosphate transporter 1-3 OS=Arabidopsis thaliana GN=PHT1-3 PE=2 SV=1

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/388 (59%), Positives = 277/388 (71%), Gaps = 26/388 (6%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYANK+TRGAFIAAVFAMQG+GIL  G ++L  S IF   + +P + ++ 
Sbjct: 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGGFVALAVSSIFDKKFPSPTYEQDR 203

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
            LS  PQ DY+WRI++MFGA+PAALTYYWRMKMPETARYTALV  N K+A  DM+KVL T
Sbjct: 204 FLSTPPQADYIWRIIVMFGALPAALTYYWRMKMPETARYTALVAKNIKQATADMSKVLQT 263

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           D+ +          P+ + YGLFSKEF+++HGLHLLGTTSTWFLLDIAFY+ NL QKDI+
Sbjct: 264 DLELEERVEDDVKDPKKN-YGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIF 322

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
            A G + KAA M+AI EVF+I++A  L+AL +TVPGYWFTV  ID IGRF IQL GF +M
Sbjct: 323 SAIGWIPKAATMNAIHEVFKIARAQTLIALCSTVPGYWFTVAFIDIIGRFAIQLMGFFMM 382

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           ++ M  +   Y+              H     N   F+++Y LT FFANFGPN+TTFIVP
Sbjct: 383 TVFMFAIAFPYN--------------HWILPDNRIGFVVMYSLTFFFANFGPNATTFIVP 428

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-----------IKQSIIAL 349
           AE+FPARLRSTCHGISAA GKAGAIVGAFG  Y  Q  DK            +K S+I L
Sbjct: 429 AEIFPARLRSTCHGISAATGKAGAIVGAFGFLYAAQPQDKTKTDAGYPPGIGVKNSLIML 488

Query: 350 AVVNFLGFLCSFMVPETNGLSLEELSGE 377
            V+NF+G L +F+VPE  G SLEELSGE
Sbjct: 489 GVINFVGMLFTFLVPEPKGKSLEELSGE 516

High-affinity transporter for external inorganic phosphate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYF4|PHT15_ARATH Probable inorganic phosphate transporter 1-5 OS=Arabidopsis thaliana GN=PHT1-5 PE=2 SV=2

 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/392 (58%), Positives = 277/392 (70%), Gaps = 26/392 (6%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYANK+TRGAFIAAVFAMQG GIL  G++SLI S  F H + AP +  + 
Sbjct: 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVSLIVSSTFDHAFKAPTYEVDP 203

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           V S  PQ DY+WRIVLMFGA+PA LTYYWRMKMPETARYTALV  N K+AA DM+KVL  
Sbjct: 204 VGSTVPQADYVWRIVLMFGAIPALLTYYWRMKMPETARYTALVARNTKQAASDMSKVLQV 263

Query: 121 DINVATSAYPAPVSPEAS-TYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDI 179
           D+     A     S   + T+GLF++EF ++HGLHLLGTT+TWFLLDIA+Y+ NL QKDI
Sbjct: 264 DLIAEEEAQSNSNSSNPNFTFGLFTREFARRHGLHLLGTTTTWFLLDIAYYSSNLFQKDI 323

Query: 180 YPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239
           Y A G +  A  M+AI EVF +SKA  L+AL  TVPGYWFTV  ID +GRF IQL GF+ 
Sbjct: 324 YTAIGWIPAAETMNAIHEVFTVSKAQTLIALCGTVPGYWFTVAFIDILGRFFIQLMGFIF 383

Query: 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299
           M+I M  L   YD  R ++              N   F+I+Y LT+FFANFGPN+TTF+V
Sbjct: 384 MTIFMFALAIPYDHWRHRE--------------NRIGFLIMYSLTMFFANFGPNATTFVV 429

Query: 300 PAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-----------IKQSIIA 348
           PAE+FPARLRSTCHGISAA+GKAGAIVGAFG  Y  Q  D +           ++ S++ 
Sbjct: 430 PAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYAAQSSDSEKTDAGYPPGIGVRNSLLM 489

Query: 349 LAVVNFLGFLCSFMVPETNGLSLEELSGEDKE 380
           LA VNFLG + + +VPE+ G SLEE+S ED+E
Sbjct: 490 LACVNFLGIVFTLLVPESKGKSLEEISREDEE 521

High-affinity transporter for external inorganic phosphate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XDZ7|PHT13_ORYSJ Probable inorganic phosphate transporter 1-3 OS=Oryza sativa subsp. japonica GN=PHT1-3 PE=2 SV=1

 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/388 (57%), Positives = 272/388 (70%), Gaps = 24/388 (6%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYANKRTRGAFIAAVFAMQG GILF  +++L+ S  F + Y AP++    
Sbjct: 144 DYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILFGAIVALVVSAGFRNAYPAPSYADGR 203

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
             S  P+ DY+WRI+LMFG VPAALTYYWRMKMPETARYTAL+  N K+AA DM+KVLDT
Sbjct: 204 AASLVPEADYVWRIILMFGTVPAALTYYWRMKMPETARYTALIARNAKQAAADMSKVLDT 263

Query: 121 DINV-ATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDI 179
           +I   A  A         + +GLFS++FV++HG+HL+ TTSTWFLLDIAFY+ NL QKDI
Sbjct: 264 EIQEDADRAEAVAAGGAGNEWGLFSRQFVRRHGVHLVATTSTWFLLDIAFYSQNLFQKDI 323

Query: 180 YPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239
           +   G +  A  M+A+EEVFRI++A  L+AL  T+PGYWFTV  ID  GRF IQL GF +
Sbjct: 324 FSKVGWIPPARTMNAVEEVFRIARAQALIALCGTIPGYWFTVAFIDVAGRFAIQLMGFAM 383

Query: 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299
           M++ M  L A Y               H    GNH  F+++YG T FFANFGPN+TTFIV
Sbjct: 384 MTVFMLGLAAPYH--------------HWTTPGNHTGFVVMYGFTFFFANFGPNATTFIV 429

Query: 300 PAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ---------IKQSIIALA 350
           PAE++PARLRSTCHGISAAAGKAGAIVGAFG  Y  Q   K          I+ ++  LA
Sbjct: 430 PAEIYPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQDPHKPEAGYKPGIGIRNALFVLA 489

Query: 351 VVNFLGFLCSFMVPETNGLSLEELSGED 378
             NFLG L + +VPE+ G+SLEE+S E+
Sbjct: 490 GTNFLGMLMTLLVPESKGMSLEEVSKEN 517

High-affinity transporter for external inorganic phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GSD9|PHT12_ORYSJ Inorganic phosphate transporter 1-2 OS=Oryza sativa subsp. japonica GN=PTH1-2 PE=2 SV=1

 Score =  433 bits (1114), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/387 (56%), Positives = 270/387 (69%), Gaps = 24/387 (6%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYA+K+TRGAFIAAVFAMQG GILF  +++L+ S  F H Y AP++ +N 
Sbjct: 144 DYPLSATIMSEYASKKTRGAFIAAVFAMQGFGILFGAIVALVVSAGFRHAYPAPSYAQNP 203

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
             S  PQ DY WR++LMFG +PA LTYYWRMKMPETARYTALV  N K+AA DM+KVL  
Sbjct: 204 AASLAPQADYTWRLILMFGTIPAGLTYYWRMKMPETARYTALVARNAKQAAADMSKVLHA 263

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           +I        + V     T+GLFS++F+++HG+HLL TTSTWFLLDIAFY+ NL QKDI+
Sbjct: 264 EIEERPEVVESQVV-AGETWGLFSRQFMKRHGMHLLATTSTWFLLDIAFYSQNLFQKDIF 322

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
              G +  A  M+A+EE++RIS+A  L+AL  T+PGYWFTV  ID +GRF IQ+ GF +M
Sbjct: 323 SKVGWIPPAKTMNALEELYRISRAQALIALCGTIPGYWFTVAFIDIVGRFWIQIMGFFMM 382

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           ++ M  LG  YD              H     +H  F++LY LT FFANFGPNSTTFIVP
Sbjct: 383 TVFMLALGVPYD--------------HWTHPAHHTGFVVLYALTFFFANFGPNSTTFIVP 428

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ---------IKQSIIALAV 351
           AE+FPARLRSTCHGISAA+GKAGAI+GAFG  Y  Q              I+ ++  LA 
Sbjct: 429 AEIFPARLRSTCHGISAASGKAGAIIGAFGFLYAAQDQHNPDAGYSRGIGIRNALFVLAG 488

Query: 352 VNFLGFLCSFMVPETNGLSLEELSGED 378
            NFLG L + +VPE+ GLSLEE+S ++
Sbjct: 489 TNFLGMLMTLLVPESKGLSLEEMSKDN 515

Low-affinity transporter for inorganic phosphate (Pi). Probably involved in internal Pi transport from root to shoot. Acts as a H(+):phosphate symporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H6H2|PHT14_ORYSJ Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. japonica GN=PHT1-4 PE=2 SV=1

 Score =  433 bits (1113), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/401 (56%), Positives = 270/401 (67%), Gaps = 27/401 (6%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYANKRTRGAFIAAVFAMQG G L  G++++I S  F   ++APA+  + 
Sbjct: 143 DYPLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIVAIIVSAAFKSRFDAPAYRDDR 202

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
             S  PQ DY WRIVLMFGA+PA LTYYWRMKMPETARYTALV  N K+AA DM +VL+ 
Sbjct: 203 TGSTVPQADYAWRIVLMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMTQVLNV 262

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           +I        A        +GLFS++F+++HG HLLGTT  WF+LDIAFY+ NL QKDIY
Sbjct: 263 EI--VEEQEKADEVARREQFGLFSRQFLRRHGRHLLGTTVCWFVLDIAFYSSNLFQKDIY 320

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
            A   + KA  M A+EE+F+IS+A  LVAL  T+PGYWFTVF ID IGRF+IQLGGF  M
Sbjct: 321 TAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTVFFIDIIGRFVIQLGGFFFM 380

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           +  M  L   Y               H    GNH  F+++Y  T FFANFGPNSTTFIVP
Sbjct: 381 TAFMLGLAVPYH--------------HWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVP 426

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-----------IKQSIIAL 349
           AE+FPARLRSTCHGISAAAGKAGAIVG+FG  Y  Q  D             ++ S+  L
Sbjct: 427 AEIFPARLRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRNSLFFL 486

Query: 350 AVVNFLGFLCSFMVPETNGLSLEELSGEDKEIAAVTNGIAT 390
           A  N +GF  +F+VPE+ G SLEELSGE+++   V    AT
Sbjct: 487 AGCNVIGFFFTFLVPESKGKSLEELSGENEDDDDVPEAPAT 527

High-affinity transporter for external inorganic phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01MW8|PHT14_ORYSI Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. indica GN=PHT1-4 PE=2 SV=2

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/391 (57%), Positives = 267/391 (68%), Gaps = 27/391 (6%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYANKRTRGAFIAAVFAMQG G L  G++++I S  F   ++APA+  + 
Sbjct: 143 DYPLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIVAIIVSAAFKARFDAPAYRDDR 202

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
             S  PQ DY WRIVLMFGA+PA LTYYWRMKMPETARYTALV  N K+AA DM +VL+ 
Sbjct: 203 AGSTVPQADYAWRIVLMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMTQVLNV 262

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           +I        A        +GLFS++F+++HG HLLGTT  WF+LDIAFY+ NL QKDIY
Sbjct: 263 EI--VEEQEKADEVARREQFGLFSRQFLRRHGRHLLGTTVCWFVLDIAFYSSNLFQKDIY 320

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
            A   + KA  M A+EE+F+IS+A  LVAL  T+PGYWFTVF ID IGRF+IQLGGF  M
Sbjct: 321 TAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTVFFIDIIGRFVIQLGGFFFM 380

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           +  M  L   Y               H    GNH  F+++Y  T FFANFGPNSTTFIVP
Sbjct: 381 TAFMLGLAVPYH--------------HWTTPGNHIGFVVMYAFTFFFANFGPNSTTFIVP 426

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-----------IKQSIIAL 349
           AE+FPARLRSTCHGISAAAGKAGAIVG+FG  Y  Q  D             ++ S+  L
Sbjct: 427 AEIFPARLRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRNSLFFL 486

Query: 350 AVVNFLGFLCSFMVPETNGLSLEELSGEDKE 380
           A  N +GF  +F+VPE+ G SLEELSGE+++
Sbjct: 487 AGCNVIGFFFTFLVPESKGKSLEELSGENED 517

High-affinity transporter for external inorganic phosphate.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7X7V2|PHT15_ORYSJ Probable inorganic phosphate transporter 1-5 OS=Oryza sativa subsp. japonica GN=PHT1-5 PE=2 SV=2

 Score =  429 bits (1104), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/407 (56%), Positives = 274/407 (67%), Gaps = 35/407 (8%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYANKRTRGAFIAAVFAMQG G L  G++++I S  F   ++APA+  + 
Sbjct: 143 DYPLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIVAIIVSAAFKLRFDAPAYRDDR 202

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
             S  PQ DY WRIVLMFGA+PA LTYYWRMKMPETARYTALV  N KKAA DMA+VL+ 
Sbjct: 203 AGSTVPQADYAWRIVLMFGAIPALLTYYWRMKMPETARYTALVAKNDKKAAADMARVLNV 262

Query: 121 DI-------NVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTIN 173
           ++         AT+A     +     YGLFS+EF ++HG HLLGTT  WF+LDIA+Y+ N
Sbjct: 263 ELVDEQEKAAAATAAAAEEEAARREQYGLFSREFARRHGHHLLGTTVCWFVLDIAYYSQN 322

Query: 174 LTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ 233
           L QKDIY A   + KA  M A+EE+F+IS+A  LVAL  T+PGYWFTV  ID +GRF IQ
Sbjct: 323 LFQKDIYTAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTVLFIDIVGRFAIQ 382

Query: 234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPN 293
           LGGF LM+  M  L   Y               H    GNH  F+++Y  T FFANFGPN
Sbjct: 383 LGGFFLMTAFMLGLAVPYH--------------HWTTPGNHVGFVVMYAFTFFFANFGPN 428

Query: 294 STTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-----------I 342
           STTFIVPAE+FPARLRSTCHGIS+AAGK GAIVG+FG  Y  Q  D             +
Sbjct: 429 STTFIVPAEIFPARLRSTCHGISSAAGKMGAIVGSFGFLYAAQSTDPSKTDAGYPRGIGV 488

Query: 343 KQSIIALAVVNFLGFLCSFMVPETNGLSLEELSGEDK---EIAAVTN 386
           + S+  LA  N +GFL +F+VPE+ G SLEELSGE++   E AA TN
Sbjct: 489 RNSLFLLAGCNVVGFLFTFLVPESKGKSLEELSGENEMEAEPAAATN 535

High-affinity transporter for external inorganic phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H6H0|PHT16_ORYSJ Inorganic phosphate transporter 1-6 OS=Oryza sativa subsp. japonica GN=PHT1-6 PE=1 SV=1

 Score =  419 bits (1078), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/396 (55%), Positives = 271/396 (68%), Gaps = 40/396 (10%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYANK+TRGAFIAAVFAMQG GI+  G+++++ S  F   + AP +  + 
Sbjct: 149 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIITGGLVAILVSASFRAAFPAPPYGEDP 208

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           V S  PQ D++WRI+LM GA+PAALTYYWR KMPETARYTALV  N K+AA DM+KVL  
Sbjct: 209 VASTPPQADFVWRIILMLGALPAALTYYWRTKMPETARYTALVANNAKQAAADMSKVLQV 268

Query: 121 ----DI-NVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLT 175
               +I N   S  P         +GLFS EFV++HGLHL+GT++TW LLDIAFY+ NL 
Sbjct: 269 VEMRNIGNNGGSRRP---------FGLFSGEFVRRHGLHLVGTSATWLLLDIAFYSQNLF 319

Query: 176 QKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLG 235
           QKDI+ A G + KAA M A+EE+FRI++A  L+AL  TVPGYWFTV LID +GRF IQ  
Sbjct: 320 QKDIFSAVGWIPKAATMSALEELFRIARAQTLIALCGTVPGYWFTVALIDVVGRFKIQAV 379

Query: 236 GFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDG-NHAWFMILYGLTLFFANFGPNS 294
           GF +M++ M  L   Y               H    G NH  F++LYGLT FFANFGPNS
Sbjct: 380 GFFMMTLFMLTLALPYH--------------HWTAPGKNHVGFLLLYGLTFFFANFGPNS 425

Query: 295 TTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-----------IK 343
           TTFIVPAE+FPARLR+TCHGISAA+GK GAIVG+FG  Y  Q  D+            ++
Sbjct: 426 TTFIVPAEIFPARLRATCHGISAASGKLGAIVGSFGFLYLAQSPDRSKTEHGYPPGIGVR 485

Query: 344 QSIIALAVVNFLGFLCSFMVPETNGLSLEELSGEDK 379
            S+  LA  N LG L +F+VPE+ G SLEE+SG+ +
Sbjct: 486 NSLFLLAACNLLGLLFTFLVPESKGKSLEEMSGDAE 521

High-affinity transporter for external inorganic phosphate (Pi). Probably involved in Pi uptake, translocation and internal transport throughout the plant.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
425872914	402	phosphate transporter, partial [Citrus t	1.0	1.0	0.987	0.0
225448735	535	PREDICTED: probable inorganic phosphate	0.970	0.728	0.718	1e-151
255559745	545	inorganic phosphate transporter, putativ	0.992	0.732	0.687	1e-151
357490315	557	Inorganic phosphate transporter 1-1 [Med	1.0	0.721	0.648	1e-150
407911904	559	phosphate transporter 1 [Astragalus sini	0.985	0.708	0.650	1e-149
224127872	531	high affinity inorganic phosphate transp	0.952	0.721	0.651	1e-148
297736464	542	unnamed protein product [Vitis vinifera]	0.932	0.691	0.700	1e-144
356553011	557	PREDICTED: probable inorganic phosphate	0.982	0.709	0.657	1e-140
227121310	529	phosphate transporter 10 [Glycine max]	0.982	0.746	0.657	1e-139
205277480	528	AM-induced phosphate transporter [Lotus	0.915	0.696	0.606	1e-134

>gi|425872914|gb|AFY06661.1| phosphate transporter, partial [Citrus trifoliata]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/402 (98%), Positives = 397/402 (98%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH
Sbjct: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGN KKAAVDMAKVLDT
Sbjct: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNHKKAAVDMAKVLDT 120

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           DINV TSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY
Sbjct: 121 DINVVTSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
           PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM
Sbjct: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNH WFMILYGLTLFFANFGPNSTTFIVP
Sbjct: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHTWFMILYGLTLFFANFGPNSTTFIVP 300

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS 360
           AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSII LAVVNFLGFLCS
Sbjct: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIITLAVVNFLGFLCS 360

Query: 361 FMVPETNGLSLEELSGEDKEIAAVTNGIATNGKHEHEDSQMV 402
           FMVPETNGLSLEELSGEDKEIA VTNGIATNGKHEHEDSQMV
Sbjct: 361 FMVPETNGLSLEELSGEDKEIAPVTNGIATNGKHEHEDSQMV 402

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448735|ref|XP_002275526.1| PREDICTED: probable inorganic phosphate transporter 1-3 [Vitis vinifera] gi|147794581|emb|CAN78030.1| hypothetical protein VITISV_017530 [Vitis vinifera]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/394 (71%), Positives = 327/394 (82%), Gaps = 4/394 (1%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSAVIMSEYAN++TRGAFIAAVFAMQG+GIL AG +S+I S  FL  Y A  F++NH
Sbjct: 144 DYPLSAVIMSEYANQKTRGAFIAAVFAMQGIGILVAGAVSMIVSKAFLVAYKAEVFSQNH 203

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           VLS QPQGD++WRIVLMFGAVPA LTYYWRMKMPETAR+TALV+GN +KAAVDMAKVL+ 
Sbjct: 204 VLSTQPQGDFVWRIVLMFGAVPAMLTYYWRMKMPETARFTALVKGNHEKAAVDMAKVLEQ 263

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           DI V  S    PV+P  S YGL S+EFV++HGL LLGTTSTWFLLDIAFY++ LTQKDIY
Sbjct: 264 DIVVEESKPKIPVTPSPS-YGLLSREFVKRHGLQLLGTTSTWFLLDIAFYSLQLTQKDIY 322

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
           PA G+V KA+ M+AIEEV++ISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM
Sbjct: 323 PAIGLVPKASTMNAIEEVYKISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 382

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           SI MA++G  YD LRG K    K+  +E+C+G    F +LYGLTLFFANFGPNSTTFIVP
Sbjct: 383 SIFMAVIGFLYDDLRGDKKKCPKESTNEFCEGKPYLFAVLYGLTLFFANFGPNSTTFIVP 442

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK-GDKQIKQSIIALAVVNFLGFLC 359
           AELFPAR RSTCHGISAAAGKAGAI+GAF VQ YTQ  GD  IK++I+AL++VN +GF  
Sbjct: 443 AELFPARFRSTCHGISAAAGKAGAIIGAFLVQSYTQNVGD--IKRAIVALSMVNLIGFFL 500

Query: 360 SFMVPETNGLSLEELSGEDKEIAAVTNGIATNGK 393
           SF++PET G SLE+LSGED+       G+ T+ K
Sbjct: 501 SFLIPETKGKSLEQLSGEDQNGGDGEGGVKTDEK 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559745|ref|XP_002520892.1| inorganic phosphate transporter, putative [Ricinus communis] gi|223540023|gb|EEF41601.1| inorganic phosphate transporter, putative [Ricinus communis]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/403 (68%), Positives = 332/403 (82%), Gaps = 4/403 (0%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSAVIMSEYAN++TRGAFIAAVFAMQGMGILFAG +S I S  F++ ++AP+F+ NH
Sbjct: 146 DYPLSAVIMSEYANQKTRGAFIAAVFAMQGMGILFAGAVSTIVSKAFMNAFDAPSFSDNH 205

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           +LS QP+ D+ WRIVLM GAVPAALT+YWRMKMPETARYTALVEGN KKAA DMA+VL+ 
Sbjct: 206 ILSTQPEADFAWRIVLMLGAVPAALTFYWRMKMPETARYTALVEGNHKKAAADMARVLEY 265

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           DI+V  +   A  +P  S+YGLFS EF ++HG+HLLGTTSTWFLLDIAFY++ LTQKDIY
Sbjct: 266 DIHVEETGSKAAANP-TSSYGLFSAEFFRRHGIHLLGTTSTWFLLDIAFYSLQLTQKDIY 324

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
           PA+G+V KA+ M+A+EE++ +SKAM ++AL ATVPGYWFTVFLIDRIGR++IQLGGFLLM
Sbjct: 325 PASGLVHKASTMNALEEMYHLSKAMTIIALVATVPGYWFTVFLIDRIGRYLIQLGGFLLM 384

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           SICMAILG +Y +LRG+K         EYCDGN   F++L+GL LFFANFGPNSTTFIVP
Sbjct: 385 SICMAILGIQYGNLRGEKSKCGPTDKTEYCDGNPILFVVLFGLALFFANFGPNSTTFIVP 444

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD-KQIKQSIIALAVVNFLGFLC 359
           AELFPAR RSTCHGISAAAGKAGAI+GAF VQ YT  G+ K I+++IIALA VN +GF  
Sbjct: 445 AELFPARFRSTCHGISAAAGKAGAIIGAFVVQTYTLDGNAKNIRKAIIALAAVNLVGFFF 504

Query: 360 SFMVPETNGLSLEELSGEDKEIAAVTNGIATNGKHEHEDSQMV 402
           SF+VPET G SLEE+SGEDKEI A       NG++ H  ++ +
Sbjct: 505 SFLVPETKGRSLEEISGEDKEIEAGRPN--ENGRNYHGSAETI 545

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490315|ref|XP_003615445.1| Inorganic phosphate transporter 1-1 [Medicago truncatula] gi|355516780|gb|AES98403.1| Inorganic phosphate transporter 1-1 [Medicago truncatula]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/415 (64%), Positives = 320/415 (77%), Gaps = 13/415 (3%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSAVIMSEYAN++TRG+FIAAVFAMQG+GIL AG +++  S +FL  + AP F  + 
Sbjct: 143 DYPLSAVIMSEYANQKTRGSFIAAVFAMQGVGILVAGGVAMFVSKLFLLYFPAPDFETDA 202

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           VLS QP+GD++WRIVLMFGAVPAALTYYWRMKMPETARYTALVEG+ KKA  DMAKVLD 
Sbjct: 203 VLSTQPEGDFVWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGDHKKAVEDMAKVLDR 262

Query: 121 DINVATSAYPAPVSP-EASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDI 179
           +I    S     + P E+ +YGLFS EF+ +HGLHLLGTTSTWFLLDIAFY++ LTQKDI
Sbjct: 263 NILSEESNTRIAIRPLESHSYGLFSSEFLNRHGLHLLGTTSTWFLLDIAFYSLQLTQKDI 322

Query: 180 YPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239
           YP +G+V KA+ M+AIEEVF++S+AMF VAL ATVPGYW TVFLI++IGRF IQL GFL+
Sbjct: 323 YPTSGLVYKASKMNAIEEVFQLSRAMFAVALIATVPGYWCTVFLIEKIGRFRIQLIGFLV 382

Query: 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299
           MS+CM  LG  Y S RG++   K    + +C+GN   F IL+GLTLFFANFGPNSTTFIV
Sbjct: 383 MSVCMWFLGHNYRSFRGEESACKNGSKYSFCNGNPVMFAILFGLTLFFANFGPNSTTFIV 442

Query: 300 PAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYY---TQKGDKQIKQSIIALAVVNFLG 356
           PAELFPARLRSTCHGISAAAGK+GAIVGAFGVQ Y   +    K  KQ+I+ALAVVN LG
Sbjct: 443 PAELFPARLRSTCHGISAAAGKSGAIVGAFGVQSYIGNSHDKSKGTKQAIMALAVVNLLG 502

Query: 357 FLCSFMVPETNGLSLEELSGE---------DKEIAAVTNGIATNGKHEHEDSQMV 402
           F  +F+VPET G SLEE+SGE         D+EI+   NG       +  ++ MV
Sbjct: 503 FFFTFLVPETQGRSLEEISGEEKDFQGNNADEEISGERNGTRNASVDKSPETSMV 557

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407911904|gb|AFU50500.1| phosphate transporter 1 [Astragalus sinicus]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/404 (65%), Positives = 318/404 (78%), Gaps = 8/404 (1%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSAVIMSEYAN++TRG FIAAVFAMQG+GIL AG ++++ S +FL  Y AP F  + 
Sbjct: 143 DYPLSAVIMSEYANQKTRGGFIAAVFAMQGVGILVAGAVAMLVSNLFLTAYPAPDFETDP 202

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           VLS QP+GD++WRIVLMFGAVPA LTYYWRMKMPETARYTALVEG+ KKA+ DMAKVL+ 
Sbjct: 203 VLSTQPEGDFVWRIVLMFGAVPAGLTYYWRMKMPETARYTALVEGDHKKASEDMAKVLEK 262

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           +I +  S      +    +YGLFS EF  +HGLHLLGTTSTWFLLDIAFY++ LTQKDIY
Sbjct: 263 EIPLEESNIRITTAISGPSYGLFSSEFFHRHGLHLLGTTSTWFLLDIAFYSLQLTQKDIY 322

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
           PA+G+V K + M+A++EV+++SKAMF+VALFATVPGYWFTVFLID+IGRF IQL GFL+M
Sbjct: 323 PASGLVYKDSKMNAVDEVYQLSKAMFVVALFATVPGYWFTVFLIDKIGRFRIQLVGFLVM 382

Query: 241 SICMAILGARYDSLRGKK-CDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299
           S+CM  LG +Y   RG   C +     ++YC+GN   F+IL+GLTLFFANFGPNSTTFIV
Sbjct: 383 SLCMWFLGHKYADYRGHSGCSSGYS--YDYCNGNRPMFVILFGLTLFFANFGPNSTTFIV 440

Query: 300 PAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG---DKQIKQSIIALAVVNFLG 356
           PAELFPARLRSTCHGISAAAGK+GAI+GAF VQ YT       K  K++I+ L+VVN LG
Sbjct: 441 PAELFPARLRSTCHGISAAAGKSGAIIGAFVVQSYTDNAHDKTKGTKKAIMVLSVVNLLG 500

Query: 357 FLCSFMVPETNGLSLEELSGEDKEIAAVTNGIATNGKHEHEDSQ 400
           F  +F+VPET G SLEE+SGEDK+    T  IA N +    D++
Sbjct: 501 FFFTFLVPETQGRSLEEISGEDKDFQGDT--IANNAEETISDAK 542

Source: Astragalus sinicus

Species: Astragalus sinicus

Genus: Astragalus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127872|ref|XP_002329198.1| high affinity inorganic phosphate transporter [Populus trichocarpa] gi|222870979|gb|EEF08110.1| high affinity inorganic phosphate transporter [Populus trichocarpa]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 265/407 (65%), Positives = 316/407 (77%), Gaps = 24/407 (5%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSAVIMSEYAN++TRGAFIAAVFAMQG+GILFAG +S I S  FL  + +  F++ +
Sbjct: 144 DYPLSAVIMSEYANQKTRGAFIAAVFAMQGVGILFAGAVSTIVSKAFLSAFPSQPFSKVN 203

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           VLS QP+ D++WRIVLMFGAVPAALTYYWRMKMPETARYTALVEGN KKAA DMAKVL+ 
Sbjct: 204 VLSTQPEADFVWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNHKKAANDMAKVLEK 263

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           DI +  ++  AP++P  S+YG FSKEFV KHG  LLGT STWFLLDIAFYT+NLTQKD+Y
Sbjct: 264 DITIDEASSKAPINPN-SSYGFFSKEFVYKHGTQLLGTASTWFLLDIAFYTLNLTQKDVY 322

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
           PA G++ KA++M+A+EE++ +SKAM L+AL A VPGYWFTVFL+DRIGRFIIQLGGFL++
Sbjct: 323 PAAGLLNKASSMNALEEMYHLSKAMSLIALVAIVPGYWFTVFLVDRIGRFIIQLGGFLMI 382

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
                          G+K     D   ++C G+   F +LYGLT FFANFGPNSTTFIVP
Sbjct: 383 ---------------GEKNACGPDSKKDFCGGHPIMFTVLYGLTFFFANFGPNSTTFIVP 427

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-IKQSIIALAVVNFLGFLC 359
           AELFPAR RSTCHGISAA+GKAGAI+GAF VQYYTQ GD   IK++II L+VVN +GF  
Sbjct: 428 AELFPARFRSTCHGISAASGKAGAIIGAFVVQYYTQDGDSNGIKKAIIGLSVVNLIGFFF 487

Query: 360 SFMVPETNGLSLEELSGEDKEIAAVTNGIATNGKHEHED----SQMV 402
           +F+VPET G SLEELSGED++I         NGK+   D    S+MV
Sbjct: 488 TFLVPETKGKSLEELSGEDQDIG---KNAEANGKNYRTDVGPESEMV 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736464|emb|CBI25335.3| unnamed protein product [Vitis vinifera]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/394 (70%), Positives = 318/394 (80%), Gaps = 19/394 (4%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSAVIMSEYAN++TRGAFIAAVFAMQG+GIL AG +S+I S  FL  Y A  F++NH
Sbjct: 166 DYPLSAVIMSEYANQKTRGAFIAAVFAMQGIGILVAGAVSMIVSKAFLVAYKAEVFSQNH 225

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           VLS QPQGD++WRIVLMFGAVPA LTYYWRMKMPETAR+TALV+GN +KAAVDMAKVL+ 
Sbjct: 226 VLSTQPQGDFVWRIVLMFGAVPAMLTYYWRMKMPETARFTALVKGNHEKAAVDMAKVLEQ 285

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           DI V  S    PV+P  S YGL S+EFV++HGL LLGTTSTWFLLDIAFY++ LTQKDIY
Sbjct: 286 DIVVEESKPKIPVTPSPS-YGLLSREFVKRHGLQLLGTTSTWFLLDIAFYSLQLTQKDIY 344

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
           PA G+V KA+ M+AIEEV++ISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM
Sbjct: 345 PAIGLVPKASTMNAIEEVYKISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 404

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           SI MA                 K+  +E+C+G    F +LYGLTLFFANFGPNSTTFIVP
Sbjct: 405 SIFMA---------------CPKESTNEFCEGKPYLFAVLYGLTLFFANFGPNSTTFIVP 449

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK-GDKQIKQSIIALAVVNFLGFLC 359
           AELFPAR RSTCHGISAAAGKAGAI+GAF VQ YTQ  GD  IK++I+AL++VN +GF  
Sbjct: 450 AELFPARFRSTCHGISAAAGKAGAIIGAFLVQSYTQNVGD--IKRAIVALSMVNLIGFFL 507

Query: 360 SFMVPETNGLSLEELSGEDKEIAAVTNGIATNGK 393
           SF++PET G SLE+LSGED+       G+ T+ K
Sbjct: 508 SFLIPETKGKSLEQLSGEDQNGGDGEGGVKTDEK 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553011|ref|XP_003544852.1| PREDICTED: probable inorganic phosphate transporter 1-3-like [Glycine max] gi|265144571|gb|ACY74622.1| phosphate transporter1-11 [Glycine max]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/403 (65%), Positives = 312/403 (77%), Gaps = 8/403 (1%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSAVIMSEYAN++TRGAF+AAVFAMQG+GIL AG ++++ S +FL  Y A  F  + 
Sbjct: 143 DYPLSAVIMSEYANQKTRGAFVAAVFAMQGVGILVAGGVAMLVSKLFLFAYPARIFAEDA 202

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           V S QP+ D++WRIVLMFGA PAALTYYWRMKMPETARYTALVEG+ KKA  DMAKVLD 
Sbjct: 203 VQSTQPEADFVWRIVLMFGAFPAALTYYWRMKMPETARYTALVEGDHKKAVEDMAKVLDN 262

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           DI +  S      +P  S YG FS +F++KHGLHLLGTTSTWFLLDIAFY++ LTQKD Y
Sbjct: 263 DIPLEESNARVAATPGPS-YGFFSSKFLEKHGLHLLGTTSTWFLLDIAFYSLQLTQKDFY 321

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
           PA+G+V K + M+AIEEVF +SKAMF VALFATVPGYW TV+ ID+IGR+ IQL GF +M
Sbjct: 322 PASGLVPKDSRMNAIEEVFLLSKAMFTVALFATVPGYWCTVYFIDKIGRYKIQLVGFFVM 381

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           S+CM ILG +Y   RG  C +  D   EYCDGN   F+IL+GLTLFFANFGPNSTTFIVP
Sbjct: 382 SVCMWILGRKYGEYRGVDCSS--DDRLEYCDGNLPMFIILFGLTLFFANFGPNSTTFIVP 439

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQI---KQSIIALAVVNFLGF 357
           AELFPAR RSTCHGISAAAGKAGAI+GAF VQ YT   + +I   K++++ L+VVNFLGF
Sbjct: 440 AELFPARFRSTCHGISAAAGKAGAIIGAFVVQSYTDNAEDKIKGMKKALMTLSVVNFLGF 499

Query: 358 LCSFMVPETNGLSLEELSGEDKEIAAVTNGIATNGKHEHEDSQ 400
            C+F+VPET G SLEE+SGEDKE+    N    N      D Q
Sbjct: 500 FCTFLVPETRGRSLEEISGEDKELPG--NITQDNANETTTDKQ 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227121310|gb|ACP19345.1| phosphate transporter 10 [Glycine max]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/403 (65%), Positives = 312/403 (77%), Gaps = 8/403 (1%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSAVIMSEYAN++TRGAF+AAVFAMQG+GIL AG ++++ S +FL  Y A  F  + 
Sbjct: 115 DYPLSAVIMSEYANQKTRGAFVAAVFAMQGVGILVAGGVAMLVSKLFLFAYPARIFAEDA 174

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           V S QP+ D++WRIVLMFGA PAALTYYWRMKMPETARYTALVEG+ KKA  DMAKVLD 
Sbjct: 175 VQSTQPEADFVWRIVLMFGAFPAALTYYWRMKMPETARYTALVEGDHKKAVEDMAKVLDN 234

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           DI +  S      +P  S YG FS +F++KHGLHLLGTTSTWFLLDIAFY++ LTQKD Y
Sbjct: 235 DIPLEESNARVAATPGPS-YGFFSSKFLEKHGLHLLGTTSTWFLLDIAFYSLQLTQKDFY 293

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
           PA+G+V K + M+AIEEVF +SKAMF VALFATVPGYW TV+ ID+IGR+ IQL GF +M
Sbjct: 294 PASGLVPKDSRMNAIEEVFLLSKAMFTVALFATVPGYWCTVYFIDKIGRYKIQLVGFFVM 353

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           S+CM ILG +Y   RG  C +  D   EYCDGN   F+IL+GLTLFFANFGPNSTTFIVP
Sbjct: 354 SVCMWILGRKYGEYRGVDCSS--DDRLEYCDGNLPMFIILFGLTLFFANFGPNSTTFIVP 411

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQI---KQSIIALAVVNFLGF 357
           AELFPAR RSTCHGISAAAGKAGAI+GAF VQ YT   + +I   K++++ L+VVNFLGF
Sbjct: 412 AELFPARFRSTCHGISAAAGKAGAIIGAFVVQSYTDNAEDKIKGMKKALMTLSVVNFLGF 471

Query: 358 LCSFMVPETNGLSLEELSGEDKEIAAVTNGIATNGKHEHEDSQ 400
            C+F+VPET G SLEE+SGEDKE+    N    N      D Q
Sbjct: 472 FCTFLVPETRGRSLEEISGEDKELPG--NITQDNANETTTDKQ 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|205277480|dbj|BAG71408.1| AM-induced phosphate transporter [Lotus japonicus]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/386 (60%), Positives = 293/386 (75%), Gaps = 18/386 (4%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA IMSEYANKRTRGAFIAAVFAMQG+GI+FAG++S+  S  F   Y+AP+F+ + 
Sbjct: 141 DYPLSATIMSEYANKRTRGAFIAAVFAMQGVGIIFAGLVSMCLSAGFKASYHAPSFHDDP 200

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
           ++S QPQGD +WR+VLM GAVPAA+TYYWRMKMPET RYTA++EGN K+AA DMA+VLD 
Sbjct: 201 IMSTQPQGDLMWRLVLMIGAVPAAMTYYWRMKMPETGRYTAIIEGNAKQAAADMARVLDI 260

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
           +I              A+ Y L+S EF  +HG HL+GT ++WFLLDIAFY+ NLTQKDI+
Sbjct: 261 EIQAEQDKLAE--FKAANDYPLWSNEFFTRHGRHLIGTMTSWFLLDIAFYSQNLTQKDIF 318

Query: 181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
           PA G++ K   M+AI+EVF  S+AMF++ALF T PGYWFTVF I+++GR+ IQL GF +M
Sbjct: 319 PAMGLIDKDFEMNAIQEVFETSRAMFVIALFGTFPGYWFTVFFIEKLGRYKIQLIGFFMM 378

Query: 241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
           S+ M I+G +YD LR +               N   F +LYGLT FFANFGPNSTTF++P
Sbjct: 379 SVFMFIIGVKYDYLRNE---------------NSHMFALLYGLTFFFANFGPNSTTFVLP 423

Query: 301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD-KQIKQSIIALAVVNFLGFLC 359
           AELFP R+RSTCH +SAAAGKAGA+VGAFG+Q YTQKG+ KQIK +++ LAV N +GF C
Sbjct: 424 AELFPTRVRSTCHALSAAAGKAGAMVGAFGIQNYTQKGEQKQIKHAMMILAVTNLIGFFC 483

Query: 360 SFMVPETNGLSLEELSGEDKEIAAVT 385
           SF+V ET G SLEE+SGED   + +T
Sbjct: 484 SFLVTETKGRSLEEISGEDGRESELT 509

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
TAIR|locus:2176471	521	PHT1;3 "phosphate transporter	0.900	0.694	0.551	2.5e-104
TAIR|locus:2176481	524	PHT1;2 "phosphate transporter	0.900	0.690	0.559	2.5e-104
TAIR|locus:2176461	524	PHT1;1 "AT5G43350" [Arabidopsi	0.900	0.690	0.559	2.5e-104
TAIR|locus:2046432	542	PHT1;5 "phosphate transporter	0.910	0.675	0.545	4.1e-104
TAIR|locus:2064895	534	PHT1;4 "phosphate transporter	0.910	0.685	0.511	8.4e-97
TAIR|locus:2176451	516	PHT1;6 "phosphate transporter	0.741	0.577	0.552	8e-85
TAIR|locus:2102450	535	PHT1;7 "AT3G54700" [Arabidopsi	0.616	0.463	0.583	5.9e-73
TAIR|locus:2011681	532	PHT1;9 "AT1G76430" [Arabidopsi	0.920	0.695	0.416	2.5e-72
TAIR|locus:2037390	534	PHT1;8 "phosphate transporter	0.883	0.664	0.419	2.1e-68
SGD|S000004592	587	PHO84 "High-affinity inorganic	0.880	0.603	0.301	6.1e-39

TAIR|locus:2176471 PHT1;3 "phosphate transporter 1;3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 214/388 (55%), Positives = 261/388 (67%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLSA IMSEYANK+TRGAFIAAVFAMQG+GIL  G ++L  S IF   + +P + ++ 
Sbjct:   144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGGFVALAVSSIFDKKFPSPTYEQDR 203

Query:    61 VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
              LS  PQ DY+WRI++MFGA+PAALTYYWRMKMPETARYTALV  N K+A  DM+KVL T
Sbjct:   204 FLSTPPQADYIWRIIVMFGALPAALTYYWRMKMPETARYTALVAKNIKQATADMSKVLQT 263

Query:   121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
             D+ +          P+ + YGLFSKEF+++HGLHLLGTTSTWFLLDIAFY+ NL QKDI+
Sbjct:   264 DLELEERVEDDVKDPKKN-YGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIF 322

Query:   181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
              A G + KAA M+AI EVF+I++A  L+AL +TVPGYWFTV  ID IGRF IQL GF +M
Sbjct:   323 SAIGWIPKAATMNAIHEVFKIARAQTLIALCSTVPGYWFTVAFIDIIGRFAIQLMGFFMM 382

Query:   241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
             ++ M  +   Y+              H     N   F+++Y LT FFANFGPN+TTFIVP
Sbjct:   383 TVFMFAIAFPYN--------------HWILPDNRIGFVVMYSLTFFFANFGPNATTFIVP 428

Query:   301 AELFPARLRSTCHXXXXXXXXXXXXXXXXXXQYYTQKGDKQ-----------IKQSIIAL 349
             AE+FPARLRSTCH                   Y  Q  DK            +K S+I L
Sbjct:   429 AEIFPARLRSTCHGISAATGKAGAIVGAFGFLYAAQPQDKTKTDAGYPPGIGVKNSLIML 488

Query:   350 AVVNFLGFLCSFMVPETNGLSLEELSGE 377
              V+NF+G L +F+VPE  G SLEELSGE
Sbjct:   489 GVINFVGMLFTFLVPEPKGKSLEELSGE 516

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006817 "phosphate ion transport" evidence=IEA

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176481 PHT1;2 "phosphate transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 217/388 (55%), Positives = 258/388 (66%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLSA IMSEYANK+TRGAFIAAVFAMQG+GIL  G ++L  S IF   + AP +  N 
Sbjct:   144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGGFVALAVSSIFDKKFPAPTYAVNR 203

Query:    61 VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
              LS  PQ DY+WRI++MFGA+PAALTYYWRMKMPETARYTALV  N K+A  DM+KVL T
Sbjct:   204 ALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPETARYTALVAKNIKQATADMSKVLQT 263

Query:   121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
             DI +          P  + YGLFSKEF+++HGLHLLGTTSTWFLLDIAFY+ NL QKDI+
Sbjct:   264 DIELEERVEDDVKDPRQN-YGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIF 322

Query:   181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
              A G + KAA M+A  EVFRI++A  L+AL +TVPGYWFTV  ID IGRF IQL GF +M
Sbjct:   323 SAIGWIPKAATMNATHEVFRIARAQTLIALCSTVPGYWFTVAFIDTIGRFKIQLNGFFMM 382

Query:   241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
             ++ M  +   Y+              H     N   F+++Y LT FFANFGPN+TTFIVP
Sbjct:   383 TVFMFAIAFPYN--------------HWIKPENRIGFVVMYSLTFFFANFGPNATTFIVP 428

Query:   301 AELFPARLRSTCHXXXXXXXXXXXXXXXXXXQYYTQKGDKQ-----------IKQSIIAL 349
             AE+FPARLRSTCH                   Y  Q  DK            +K S+I L
Sbjct:   429 AEIFPARLRSTCHGISAAAGKAGAIIGAFGFLYAAQNQDKAKVDAGYPPGIGVKNSLIVL 488

Query:   350 AVVNFLGFLCSFMVPETNGLSLEELSGE 377
              V+NF+G L +F+VPE  G SLEELSGE
Sbjct:   489 GVLNFIGMLFTFLVPEPKGKSLEELSGE 516

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006817 "phosphate ion transport" evidence=IEA;TAS

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

TAIR|locus:2176461 PHT1;1 "AT5G43350" [Arabidopsis thaliana (taxid:3702)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 217/388 (55%), Positives = 259/388 (66%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLSA IMSEYANK+TRGAFIAAVFAMQG+GIL  G ++L  S IF   + AP +  N 
Sbjct:   144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGGFVALAVSSIFDKKFPAPTYAVNR 203

Query:    61 VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
              LS  PQ DY+WRI++MFGA+PAALTYYWRMKMPETARYTALV  N K+A  DM+KVL T
Sbjct:   204 ALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPETARYTALVAKNIKQATADMSKVLQT 263

Query:   121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
             DI +          P+ + YGLFSKEF+++HGLHLLGTTSTWFLLDIAFY+ NL QKDI+
Sbjct:   264 DIELEERVEDDVKDPKQN-YGLFSKEFLRRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIF 322

Query:   181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
              A G + KAA M+A  EVFRI++A  L+AL +TVPGYWFTV  ID IGRF IQL GF +M
Sbjct:   323 SAIGWIPKAATMNATHEVFRIARAQTLIALCSTVPGYWFTVAFIDTIGRFKIQLNGFFMM 382

Query:   241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
             ++ M  +   Y+              H     N   F+++Y LT FFANFGPN+TTFIVP
Sbjct:   383 TVFMFAIAFPYN--------------HWIKPENRIGFVVMYSLTFFFANFGPNATTFIVP 428

Query:   301 AELFPARLRSTCHXXXXXXXXXXXXXXXXXXQYYTQKGDKQ-----------IKQSIIAL 349
             AE+FPARLRSTCH                   Y  Q  DK            +K S+I L
Sbjct:   429 AEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDKAKVDAGYPPGIGVKNSLIML 488

Query:   350 AVVNFLGFLCSFMVPETNGLSLEELSGE 377
              V+NF+G L +F+VPE  G SLEELSGE
Sbjct:   489 GVLNFIGMLFTFLVPEPKGKSLEELSGE 516

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS;IMP

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:1901683 "arsenate ion transmembrane transporter activity" evidence=IMP

GO:1901684 "arsenate ion transmembrane transport" evidence=IMP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0006817 "phosphate ion transport" evidence=IDA

TAIR|locus:2046432 PHT1;5 "phosphate transporter 1;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 214/392 (54%), Positives = 260/392 (66%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLSA IMSEYANK+TRGAFIAAVFAMQG GIL  G++SLI S  F H + AP +  + 
Sbjct:   144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVSLIVSSTFDHAFKAPTYEVDP 203

Query:    61 VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
             V S  PQ DY+WRIVLMFGA+PA LTYYWRMKMPETARYTALV  N K+AA DM+KVL  
Sbjct:   204 VGSTVPQADYVWRIVLMFGAIPALLTYYWRMKMPETARYTALVARNTKQAASDMSKVLQV 263

Query:   121 DINVATSAYPAPVSPEAS-TYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDI 179
             D+     A     S   + T+GLF++EF ++HGLHLLGTT+TWFLLDIA+Y+ NL QKDI
Sbjct:   264 DLIAEEEAQSNSNSSNPNFTFGLFTREFARRHGLHLLGTTTTWFLLDIAYYSSNLFQKDI 323

Query:   180 YPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239
             Y A G +  A  M+AI EVF +SKA  L+AL  TVPGYWFTV  ID +GRF IQL GF+ 
Sbjct:   324 YTAIGWIPAAETMNAIHEVFTVSKAQTLIALCGTVPGYWFTVAFIDILGRFFIQLMGFIF 383

Query:   240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299
             M+I M  L   YD  R ++              N   F+I+Y LT+FFANFGPN+TTF+V
Sbjct:   384 MTIFMFALAIPYDHWRHRE--------------NRIGFLIMYSLTMFFANFGPNATTFVV 429

Query:   300 PAELFPARLRSTCHXXXXXXXXXXXXXXXXXXQYYTQKGDKQ-----------IKQSIIA 348
             PAE+FPARLRSTCH                   Y  Q  D +           ++ S++ 
Sbjct:   430 PAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYAAQSSDSEKTDAGYPPGIGVRNSLLM 489

Query:   349 LAVVNFLGFLCSFMVPETNGLSLEELSGEDKE 380
             LA VNFLG + + +VPE+ G SLEE+S ED+E
Sbjct:   490 LACVNFLGIVFTLLVPESKGKSLEEISREDEE 521

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006817 "phosphate ion transport" evidence=IEA;IMP

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2064895 PHT1;4 "phosphate transporter 1;4" [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 200/391 (51%), Positives = 256/391 (65%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLSA IMSEYANK+TRGAF++AVFAMQG GI+  G+ ++I S  F   + +PA+  + 
Sbjct:   144 DYPLSATIMSEYANKKTRGAFVSAVFAMQGFGIMAGGIFAIIISSAFEAKFPSPAYADDA 203

Query:    61 VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
             + S  PQ D +WRI+LM GA+PAA+TYY R KMPETARYTALV  + K+AA DM+KVL  
Sbjct:   204 LGSTIPQADLVWRIILMAGAIPAAMTYYSRSKMPETARYTALVAKDAKQAASDMSKVLQV 263

Query:   121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
             +I             ++  +GLFSKEF+ +HGLHLLGTTSTWFLLDIAFY+ NL QKDI+
Sbjct:   264 EIEPEQQKLEEISKEKSKAFGLFSKEFMSRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIF 323

Query:   181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
              A G +  A +M+AI+EVF+I++A  L+AL +TVPGYWFTV  ID IGRF IQ+ GF  M
Sbjct:   324 SAIGWIPPAQSMNAIQEVFKIARAQTLIALCSTVPGYWFTVAFIDVIGRFAIQMMGFFFM 383

Query:   241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
             ++ M  L   Y+    K+              N   F+I+Y LT FFANFGPN+TTF+VP
Sbjct:   384 TVFMFALAIPYNHWTHKE--------------NRIGFVIMYSLTFFFANFGPNATTFVVP 429

Query:   301 AELFPARLRSTCHXXXXXXXXXXXXXXXXXXQYYTQKGDKQ-----------IKQSIIAL 349
             AE+FPAR RSTCH                   Y  Q  DK            ++ S+I L
Sbjct:   430 AEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQNPDKDKTDAGYPPGIGVRNSLIVL 489

Query:   350 AVVNFLGFLCSFMVPETNGLSLEELSGEDKE 380
              VVNFLG L +F+VPE+ G SLEE+SGE+++
Sbjct:   490 GVVNFLGILFTFLVPESKGKSLEEMSGENED 520

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006817 "phosphate ion transport" evidence=IEA

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2176451 PHT1;6 "phosphate transporter 1;6" [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 173/313 (55%), Positives = 219/313 (69%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLSA IMSEY+NKRTRGAFIAAVF MQG+GIL AG +SL+ S +F   + + A+  + 
Sbjct:   145 DYPLSATIMSEYSNKRTRGAFIAAVFGMQGIGILAAGAVSLLVSAVFESKFPSRAYILDG 204

Query:    61 VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
               S  PQ DY+WRI+LM GA+PA LTYYWRMKMPETARYTALV  N ++AA+DM KVL+ 
Sbjct:   205 AASTVPQADYVWRIILMVGALPALLTYYWRMKMPETARYTALVSKNAEQAALDMTKVLNV 264

Query:   121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
             DI  A++A        +  +GLFS +F+++HGLHLLGT STWFLLDIAFY+ NL QKDI+
Sbjct:   265 DIE-ASAAKNDQARVSSDEFGLFSMKFLRRHGLHLLGTASTWFLLDIAFYSQNLFQKDIF 323

Query:   181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
                G +  A  M+AI+E++ I+KA  ++A  +TVPGY+FTV  ID +GR  IQ+ GF +M
Sbjct:   324 TTIGWLPSAKTMNAIQELYMIAKAQTIIACCSTVPGYFFTVGFIDYMGRKKIQIMGFAMM 383

Query:   241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVP 300
             +I M  L   Y               H     N   F++LY  T FF+NFGPN+TTFIVP
Sbjct:   384 TIFMLSLAIPYH--------------HWTLPANRIGFVVLYSFTFFFSNFGPNATTFIVP 429

Query:   301 AELFPARLRSTCH 313
             AE+FPAR+RSTCH
Sbjct:   430 AEIFPARIRSTCH 442

GO:0005215 "transporter activity" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0006817 "phosphate ion transport" evidence=IEA

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2102450 PHT1;7 "AT3G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 147/252 (58%), Positives = 184/252 (73%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLSA IMSEYANK+TRGAFIAAVFAMQG GIL  G+ ++I S  F   + AP +  + 
Sbjct:   144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILTGGIFAIIVSAAFEAKFPAPTYQIDA 203

Query:    61 VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
             + S  PQ DY+WRI+LM GA+PAA+TYY R KMPETARYTALV  + K AA +M+KVL  
Sbjct:   204 LASTVPQADYVWRIILMVGALPAAMTYYSRSKMPETARYTALVAKDAKLAASNMSKVLQV 263

Query:   121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIY 180
             +I             +++++GLFSKEF+++HGLHLLGTTSTWFLLDIAFY+ NL QKDI+
Sbjct:   264 EIEAEQQG----TEDKSNSFGLFSKEFMKRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIF 319

Query:   181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM 240
              A G +  A  M+AI+EVF+I++A  L+AL +TVPGYWFTV  ID IGRF IQ+ GF  M
Sbjct:   320 SAIGWIPPAQTMNAIQEVFKIARAQTLIALCSTVPGYWFTVAFIDVIGRFAIQMMGFFFM 379

Query:   241 SICMAILGARYD 252
             ++ M  L   YD
Sbjct:   380 TVFMFALAIPYD 391

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:1901683 "arsenate ion transmembrane transporter activity" evidence=IMP

GO:1901684 "arsenate ion transmembrane transport" evidence=IMP

TAIR|locus:2011681 PHT1;9 "AT1G76430" [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 167/401 (41%), Positives = 231/401 (57%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLSA IMSE+ANKRTRGAFIAAVF+MQG+GIL +  ++++    F +     +   N 
Sbjct:   137 DYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILMSSAVTMVVCLAFKNAGEGSSEKTNV 196

Query:    61 V-LS--AQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKV 117
               L   A P+ D  WR++LM GA+PAALT+YWRM MPETARYTALVE N  +AA DM +V
Sbjct:   197 AGLETLAPPESDIAWRLILMIGALPAALTFYWRMLMPETARYTALVENNVVQAAKDMQRV 256

Query:   118 LDTD-INVAT--SAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINL 174
             +    I+  T  S+      P +S+Y LFS+ F+  HG  L   ++ WFL+D+ FYT NL
Sbjct:   257 MSVSMISQITEDSSSELEQPPSSSSYKLFSRRFLSLHGRDLFAASANWFLVDVVFYTSNL 316

Query:   175 TQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234
                 I+  +   +   + +  +  F ++K   +VA  +T+PGYWFTV+ ID+IGR  IQ+
Sbjct:   317 LLSQIFNFSN--KPLNSTNVYDSAFEVAKLAAIVAACSTIPGYWFTVYFIDKIGRVKIQM 374

Query:   235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNS 294
              GF LM++   + G  Y     K         HE  +     FM+LYGL  FF+NFGPN+
Sbjct:   375 MGFFLMAVVYLVAGIPYSWYWSK---------HEKTNKG---FMVLYGLIFFFSNFGPNT 422

Query:   295 TTFIVPAELFPARLRSTCHXXXXXXXXXXXXXXXX----XXQYYTQKGDKQIKQSIIALA 350
             TTFI+PAELFPAR RSTCH                      +++ + G   +K+  IA  
Sbjct:   423 TTFIIPAELFPARFRSTCHGISGAAGKFGAIVGTVGFLWATRHHEEDGFPDVKRVRIAFL 482

Query:   351 VVN---FLGFLCSFMVP-ETNGLSLEELSGEDKEIAAVTNG 387
             ++      G + +++   ET G SLEE   ED EI + + G
Sbjct:   483 ILGGVCIAGMIVTYLFTRETMGRSLEE--NED-EIVSTSAG 520

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=IGI;ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006817 "phosphate ion transport" evidence=IMP

GO:0015415 "phosphate ion transmembrane-transporting ATPase activity" evidence=IDA

GO:1901684 "arsenate ion transmembrane transport" evidence=IMP

TAIR|locus:2037390 PHT1;8 "phosphate transporter 1;8" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 162/386 (41%), Positives = 215/386 (55%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLSA IMSE+ANKRTRGAFIAAVF+MQG+GIL +  +++     F         +   
Sbjct:   136 DYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILVSSAVTMAVCVAFKRSGGGLEVDA-- 193

Query:    61 VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLD- 119
               +A  + D  WR++LM GA+PAALT+YWRM MPETARYTALVE N  +AA DM +V+  
Sbjct:   194 --AAPTEADLAWRLILMIGALPAALTFYWRMLMPETARYTALVENNIVQAAKDMQRVMSR 251

Query:   120 TDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDI 179
             + I+   +  P P  P  S Y LFS+ F + HG  L   +  WFL+DI FYT NL    I
Sbjct:   252 SHISDEATTDPPPPPPPPS-YKLFSRCFFRLHGRDLFAASFNWFLVDIVFYTSNLLLSHI 310

Query:   180 YPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239
             +      + + A +  +  F +++   ++A  +T+PGYWFTV+ ID+IGR  IQ+ GF  
Sbjct:   311 FSHYS-KKPSTAENVYDAAFEVAELGAIIAACSTIPGYWFTVYFIDKIGRVKIQIMGFFF 369

Query:   240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299
             M++   + G  Y     K         HE+   N+  FM+LYGL  FF NFGPN+TTFI+
Sbjct:   370 MAVIYLVAGIPYSWYWSK---------HEH---NNKGFMVLYGLVFFFCNFGPNTTTFII 417

Query:   300 PAELFPARLRSTCHXXXXXXXXXXXXXXXXXXQYYTQKGDKQIKQSI--------IALAV 351
             PAE FPAR RSTCH                   + T+K +   K  I        IA  +
Sbjct:   418 PAEHFPARFRSTCHGISGAAGKLGAIVGTVGFLWATKKMESDDKNQIYPEVNRMRIAFLI 477

Query:   352 VN---FLGFLCS-FMVPETNGLSLEE 373
             +      G L + F   ET G SLEE
Sbjct:   478 LGGVCIAGILVTYFFTKETMGRSLEE 503

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015114 "phosphate ion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

SGD|S000004592 PHO84 "High-affinity inorganic phosphate (Pi) transporter and low-affinity m" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 120/398 (30%), Positives = 181/398 (45%)

Query:     1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
             DYPLS++I SE+A  + RGA + AVFA Q  G +  G+I+LI    +             
Sbjct:   178 DYPLSSIITSEFATTKWRGAIMGAVFANQAWGQISGGIIALILVAAYKGELEYANSGAEC 237

Query:    61 VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMA----- 115
                 Q   D +WRI++  G V      Y+R+ +PE+ RY   V    + AA         
Sbjct:   238 DARCQKACDQMWRILIGLGTVLGLACLYFRLTIPESPRYQLDVNAKLELAAAAQEQDGEK 297

Query:   116 KVLDTD-----INVATSAYPAPVS----PEASTYGLFSKEFVQ-KHGLHLLGTTSTWFLL 165
             K+ DT      IN    A  A  S    P  +++  F + F Q K+G  LLGT  +WF L
Sbjct:   298 KIHDTSDEDMAINGLERASTAVESLDNHPPKASFKDFCRHFGQWKYGKILLGTAGSWFTL 357

Query:   166 DIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID 225
             D+AFY ++L    I    G    A + +  ++++  +    ++    ++PGYW +VF +D
Sbjct:   358 DVAFYGLSLNSAVILQTIGY---AGSKNVYKKLYDTAVGNLILICAGSLPGYWVSVFTVD 414

Query:   226 RIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTL 285
              IGR  IQL GF++++    ++G  Y  L                 G+H   + LY +  
Sbjct:   415 IIGRKPIQLAGFIILTALFCVIGFAYHKL-----------------GDHG-LLALYVICQ 456

Query:   286 FFANFGPNSTTFIVPAELFPARLRSTCHXXXXXX----XXXXXXXXXXXXQYYTQKGDKQ 341
             FF NFGPN+TTFIVP E FP R RST H                       +   +  K 
Sbjct:   457 FFQNFGPNTTTFIVPGECFPTRYRSTAHGISAASGKVGAIIAQTALGTLIDHNCARDGKP 516

Query:   342 ----IKQSIIALAVVNFLGFLCSFMVPETNGLSLEELS 375
                 +   +   A+   LG   + ++PET   +LEE++
Sbjct:   517 TNCWLPHVMEIFALFMLLGIFTTLLIPETKRKTLEEIN 554

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006797 "polyphosphate metabolic process" evidence=IMP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IEA;ISS;IDA;IMP

GO:0006817 "phosphate ion transport" evidence=IEA;ISS;IDA;IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISS;IDA

GO:0005384 "manganese ion transmembrane transporter activity" evidence=IMP

GO:0006828 "manganese ion transport" evidence=IMP

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96243	PHT12_ARATH	No assigned EC number	0.6005	0.9004	0.6908	yes	no
Q8VYM2	PHT11_ARATH	No assigned EC number	0.6030	0.9004	0.6908	yes	no
Q94DB8	PT111_ORYSJ	No assigned EC number	0.5947	0.8955	0.6486	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PtrPHT1-8	high affinity inorganic phosphate transporter (531 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.1304.1	hypothetical protein (502 aa)			•						0.415

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	402
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	1e-153
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-20
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	6e-12
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	5e-08
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-07
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-05

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score =  441 bits (1137), Expect = e-153
 Identities = 183/389 (47%), Positives = 232/389 (59%), Gaps = 30/389 (7%)

Query: 1   DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNH 60
           DYPLSA+I SE+A K+ RGA +AAVFAMQG GIL   +++LI    F H   A A   + 
Sbjct: 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASC 191

Query: 61  VLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
             S  P  DY+WRI++ FGAVPA L  Y+R+ +PET RYTA V  + ++AA DM+ VL  
Sbjct: 192 TGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV 251

Query: 121 DINV----ATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQ 176
            I         A  A   P+AS    F+  F  +HG HLLGT  +WFLLDIAFY +NL Q
Sbjct: 252 KIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQ 311

Query: 177 KDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG 236
           K I  A G    AA  +A EE+++ +    ++AL  TVPGYW TVFL+D IGR  IQL G
Sbjct: 312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMG 371

Query: 237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTT 296
           F ++++   +LG  Y+ L                   H  F+ +Y L  FFANFGPN+TT
Sbjct: 372 FFILTVLFFVLGFAYNHL-----------------STHG-FLAIYVLAQFFANFGPNATT 413

Query: 297 FIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ--------IKQSIIA 348
           FIVP E+FP R RST HGISAA+GKAGAI+G FG  Y  Q GD          +   +  
Sbjct: 414 FIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEI 473

Query: 349 LAVVNFLGFLCSFMVPETNGLSLEELSGE 377
            A+  FLG L + ++PET G SLEELSGE
Sbjct: 474 FALFMFLGILFTLLIPETKGKSLEELSGE 502

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 92.7 bits (231), Expect = 1e-20
 Identities = 77/378 (20%), Positives = 126/378 (33%), Gaps = 54/378 (14%)

Query: 2   YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHV 61
             L  + +SE A K+ RGA  +        GIL A +I L  +                 
Sbjct: 119 SVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYS-------------- 164

Query: 62  LSAQPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTD 121
                     WRI L    VPA L     + +PE+ R+  L    ++  AV       +D
Sbjct: 165 ------NSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSD 218

Query: 122 INVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIA--FYTINLTQKDI 179
           ++         +            E  +   +          +L I      IN      
Sbjct: 219 VDQEIQEEKDSLERSVEAEKASWLELFRGKTV--RQRLLMGVMLQIFQQLTGINAI---F 273

Query: 180 YPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239
           Y +  I       D++     ++  + +V    T       +FL+DR GR  + L G   
Sbjct: 274 YYSPTIFETLGLSDSLL----VTIIVGVVNFVFTFIA----IFLVDRFGRRPLLLLGAAG 325

Query: 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANF--GPNSTTF 297
           M+IC  +LG     +   K                   + +  + LF A F  G     +
Sbjct: 326 MAICFLVLGVALLGVAKSKGAG---------------IVAIVFILLFIAFFALGWGPVPW 370

Query: 298 IVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGF 357
           ++ +ELFP  +R     I+ AA      +  F     T      +   ++   ++     
Sbjct: 371 VIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVF--LVFAGLLVLFIL 428

Query: 358 LCSFMVPETNGLSLEELS 375
              F VPET G +LEE+ 
Sbjct: 429 FVFFFVPETKGRTLEEID 446

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 221 VFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMIL 280
           +FL+DR GR  + L G   M+IC+ +LG            A          GN A   IL
Sbjct: 340 IFLVDRFGRRPLLLIGAAGMAICLFVLGI---------LGASFVTGSSKSSGNVAIVFIL 390

Query: 281 YGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK 340
             L + F   G     +++ +E+FP  LR     I+ AA      +  F V +      +
Sbjct: 391 --LFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA----NWLANFIVGFLFPTMLE 444

Query: 341 QIKQSIIAL--AVVNFLGF-LCSFMVPETNGLSLEEL 374
            I    + +    +N LG     F +PET G +LEE+
Sbjct: 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 70/331 (21%), Positives = 116/331 (35%), Gaps = 87/331 (26%)

Query: 5   SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSA 64
           +A+ ++EYA    RG + +       +G+L A   +L    +            +++L  
Sbjct: 117 AALYLAEYAPPGKRGFYGSFQQVGAPVGLLLA---ALTVLLL------------SYLLGD 161

Query: 65  QPQGDYLWRIVLMFGAVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINV 124
               ++ WRI  +  AV   +  Y R  + ET  +    E ++KK               
Sbjct: 162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRG------------- 208

Query: 125 ATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATG 184
                     P A T     K F+   GL +  TT         FY I       Y  T 
Sbjct: 209 ----------PIAETLTKHRKPFLLGLGLVIATTT--------TFYLIT-----TYLPT- 244

Query: 185 IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSIC- 243
            + +   + A   +  +  ++ L  +   + G      L DRIGR  + +   +L ++  
Sbjct: 245 YLTQTLGLSANSALLVLMLSLILFFITIPLSGA-----LSDRIGRRPVLIIFTVLAALLA 299

Query: 244 ----MAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299
               MA+L +   +L                     +F++L    +     GP  +    
Sbjct: 300 VPLLMALLDSGSFTL--------------------FFFLVLGMALIGGMYTGPMGSFL-- 337

Query: 300 PAELFPARLRSTCHGISAAAGKAGAIVGAFG 330
             ELFP  +R T  G S A   AGAI G F 
Sbjct: 338 -PELFPTEVRYT--GASLAYNLAGAIFGGFA 365

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 64/329 (19%), Positives = 108/329 (32%), Gaps = 62/329 (18%)

Query: 2   YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHV 61
            P    ++SEYA KR RG  +  +F    +G    G ++             P F     
Sbjct: 123 MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL---------IPVFG---- 169

Query: 62  LSAQPQGDYLWRIVLMFGAV-PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDT 120
                     WR +   G + P  L       +PE+  +  LV    +     +  +   
Sbjct: 170 ----------WRSLFYVGGIAPLLLLLLLMRFLPESIDF--LVSKRPETVRRIVNAIAPQ 217

Query: 121 DINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTI-NLTQKDI 179
               A SA P   + + +   +F   F  K     +     +F+L +  Y + N   K +
Sbjct: 218 MQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM 277

Query: 180 YPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL 239
                 +  AA                L   F  V G     +L DR+G  +      LL
Sbjct: 278 VELGFSLSLAATG------------GALFN-FGGVIGSIIFGWLADRLGPRVT-ALLLLL 323

Query: 240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV 299
            ++   ++G+   S                        ++L G    F   G  S  + +
Sbjct: 324 GAVFAVLVGSTLFSPTL---------------------LLLLGAIAGFFVNGGQSGLYAL 362

Query: 300 PAELFPARLRSTCHGISAAAGKAGAIVGA 328
            A  +P  +R+T  G +   G+ GAI+G 
Sbjct: 363 MALFYPTAIRATGVGWAIGIGRLGAIIGP 391

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 24/160 (15%)

Query: 214 VPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGN 273
           +P    T+ LIDR+GR        LL  + + +L      L                   
Sbjct: 369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL------------------- 409

Query: 274 HAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY 333
           +     L  L  F          ++  AEL+P  +R+   G+ +   + G+I+  F V  
Sbjct: 410 YFLRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYL 468

Query: 334 YTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEE 373
               G+K +   ++    +  L  + +  +PET G+ L E
Sbjct: 469 ----GEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 205 MFLVALFATVPGYWFTVFLIDRIGR-FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKK 263
           +  +     + G      L DR+GR  ++ L G LL ++ + +L                
Sbjct: 216 LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL-------------- 261

Query: 264 DPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAG 323
                         +++  L L F           + +EL P   R T  G+    G  G
Sbjct: 262 --------APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLG 313

Query: 324 AIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP 364
             +G          G        + LA +  L  L   ++P
Sbjct: 314 GALGPLLAGLLLDTGGYGG--VFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	402
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
KOG0254	513	consensus Predicted transporter (major facilitator	99.95
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
TIGR00898	505	2A0119 cation transport protein.	99.95
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.94
PRK09952	438	shikimate transporter; Provisional	99.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
PRK11663	434	regulatory protein UhpC; Provisional	99.91
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.9
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.9
PRK12307	426	putative sialic acid transporter; Provisional	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.89
PRK10489	417	enterobactin exporter EntS; Provisional	99.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.88
TIGR00893	399	2A0114 d-galactonate transporter.	99.88
TIGR00895	398	2A0115 benzoate transport.	99.88
TIGR00891	405	2A0112 putative sialic acid transporter.	99.87
PRK03893	496	putative sialic acid transporter; Provisional	99.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.87
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.87
PRK03545	390	putative arabinose transporter; Provisional	99.87
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.86
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.86
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.85
PRK11010	491	ampG muropeptide transporter; Validated	99.85
KOG2532	466	consensus Permease of the major facilitator superf	99.85
PRK15011	393	sugar efflux transporter B; Provisional	99.84
PRK05122	399	major facilitator superfamily transporter; Provisi	99.84
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.84
PRK09705	393	cynX putative cyanate transporter; Provisional	99.84
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.84
PLN00028	476	nitrate transmembrane transporter; Provisional	99.83
PRK03699	394	putative transporter; Provisional	99.83
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.83
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.82
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.82
PRK09874	408	drug efflux system protein MdtG; Provisional	99.81
TIGR00900	365	2A0121 H+ Antiporter protein.	99.81
PRK12382	392	putative transporter; Provisional	99.81
KOG2533	495	consensus Permease of the major facilitator superf	99.8
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.8
PRK11902	402	ampG muropeptide transporter; Reviewed	99.8
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.8
PRK10504	471	putative transporter; Provisional	99.8
PRK10091	382	MFS transport protein AraJ; Provisional	99.8
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.79
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.77
TIGR00901	356	2A0125 AmpG-related permease.	99.76
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.76
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.76
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.75
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.75
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.75
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.75
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.75
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.74
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.74
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.74
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.73
PRK11043	401	putative transporter; Provisional	99.73
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.72
PRK03633	381	putative MFS family transporter protein; Provision	99.72
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.72
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.72
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.71
PRK09528	420	lacY galactoside permease; Reviewed	99.71
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.71
PRK10054	395	putative transporter; Provisional	99.71
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.71
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.7
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.69
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.67
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.67
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.65
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.65
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.64
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.63
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.61
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.61
PRK10133	438	L-fucose transporter; Provisional	99.59
TIGR00895	398	2A0115 benzoate transport.	99.59
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.59
COG2211	467	MelB Na+/melibiose symporter and related transport	99.59
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.59
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.58
PRK10429	473	melibiose:sodium symporter; Provisional	99.58
PRK11663	434	regulatory protein UhpC; Provisional	99.57
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.57
TIGR00891	405	2A0112 putative sialic acid transporter.	99.57
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.57
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.54
TIGR00805	633	oat sodium-independent organic anion transporter.	99.54
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.54
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.53
TIGR00893	399	2A0114 d-galactonate transporter.	99.52
PRK03545	390	putative arabinose transporter; Provisional	99.52
PF13347	428	MFS_2: MFS/sugar transport protein	99.51
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.51
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.51
PRK10054	395	putative transporter; Provisional	99.51
PRK09669	444	putative symporter YagG; Provisional	99.51
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.49
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.49
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.49
PRK12307	426	putative sialic acid transporter; Provisional	99.49
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.49
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.48
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.48
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.48
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.48
KOG2615	451	consensus Permease of the major facilitator superf	99.48
PLN00028	476	nitrate transmembrane transporter; Provisional	99.48
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.47
PRK03699	394	putative transporter; Provisional	99.47
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.47
PRK10504	471	putative transporter; Provisional	99.47
PRK11462	460	putative transporter; Provisional	99.47
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.47
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.47
TIGR00900	365	2A0121 H+ Antiporter protein.	99.46
PRK03893	496	putative sialic acid transporter; Provisional	99.46
KOG3626	735	consensus Organic anion transporter [Secondary met	99.45
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.45
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.45
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.44
PRK10091	382	MFS transport protein AraJ; Provisional	99.43
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.42
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.41
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.41
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.4
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.4
PRK05122	399	major facilitator superfamily transporter; Provisi	99.4
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.4
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.39
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.38
PRK09874	408	drug efflux system protein MdtG; Provisional	99.38
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.38
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.38
PRK12382	392	putative transporter; Provisional	99.38
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.38
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.37
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.36
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.36
PRK10642	490	proline/glycine betaine transporter; Provisional	99.36
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.35
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.35
PRK10489	417	enterobactin exporter EntS; Provisional	99.34
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.34
PRK11043	401	putative transporter; Provisional	99.34
PRK09848	448	glucuronide transporter; Provisional	99.34
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.34
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.33
PRK15075	434	citrate-proton symporter; Provisional	99.32
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.32
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.32
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.32
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.31
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.31
PRK09952	438	shikimate transporter; Provisional	99.31
TIGR00898	505	2A0119 cation transport protein.	99.3
KOG2563	480	consensus Permease of the major facilitator superf	99.29
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.27
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.27
PRK03633	381	putative MFS family transporter protein; Provision	99.27
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.27
PRK11010	491	ampG muropeptide transporter; Validated	99.26
PRK09705	393	cynX putative cyanate transporter; Provisional	99.26
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.26
KOG2615	451	consensus Permease of the major facilitator superf	99.24
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.23
PRK11902	402	ampG muropeptide transporter; Reviewed	99.23
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.22
KOG0569	485	consensus Permease of the major facilitator superf	99.22
PRK10133	438	L-fucose transporter; Provisional	99.21
TIGR00805	633	oat sodium-independent organic anion transporter.	99.21
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.2
PRK09528	420	lacY galactoside permease; Reviewed	99.18
PTZ00207	591	hypothetical protein; Provisional	99.17
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.17
PTZ00207	591	hypothetical protein; Provisional	99.16
TIGR00901	356	2A0125 AmpG-related permease.	99.15
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.14
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.14
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.14
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.13
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.13
PRK15011	393	sugar efflux transporter B; Provisional	99.1
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.09
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.08
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.07
KOG2532	466	consensus Permease of the major facilitator superf	99.06
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.06
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.05
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.05
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.05
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.05
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.02
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.02
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.98
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.94
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.93
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.93
KOG0254	513	consensus Predicted transporter (major facilitator	98.93
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.9
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.86
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.86
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.85
PRK09669	444	putative symporter YagG; Provisional	98.78
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.72
KOG2533	495	consensus Permease of the major facilitator superf	98.7
PRK10429	473	melibiose:sodium symporter; Provisional	98.65
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.64
PF13347	428	MFS_2: MFS/sugar transport protein	98.64
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.6
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.6
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.53
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.52
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.5
PRK11462	460	putative transporter; Provisional	98.47
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.46
KOG3762	618	consensus Predicted transporter [General function	98.42
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.38
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.38
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.34
COG2211	467	MelB Na+/melibiose symporter and related transport	98.29
PRK09848	448	glucuronide transporter; Provisional	98.21
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.19
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.17
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.16
KOG2563	480	consensus Permease of the major facilitator superf	98.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.07
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.06
KOG3810	433	consensus Micronutrient transporters (folate trans	97.93
PF12832	77	MFS_1_like: MFS_1 like family	97.82
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.76
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.75
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.71
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.68
KOG3626	735	consensus Organic anion transporter [Secondary met	97.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.66
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.65
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.49
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.48
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.15
COG0477	338	ProP Permeases of the major facilitator superfamil	97.04
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.04
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.02
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.97
COG3202	509	ATP/ADP translocase [Energy production and convers	96.9
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.88
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.77
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.74
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.59
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.26
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.24
KOG0637	498	consensus Sucrose transporter and related proteins	96.01
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.99
COG3202	509	ATP/ADP translocase [Energy production and convers	95.95
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.95
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.92
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.89
KOG0637	498	consensus Sucrose transporter and related proteins	95.46
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.42
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.23
COG2270	438	Permeases of the major facilitator superfamily [Ge	94.78
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.7
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.58
PRK03612	521	spermidine synthase; Provisional	94.2
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	93.94
KOG3762	618	consensus Predicted transporter [General function	93.84
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.83
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	92.16
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	92.0
KOG3098	461	consensus Uncharacterized conserved protein [Funct	91.44
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.96
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	89.4
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	89.3
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	87.72
KOG2881	294	consensus Predicted membrane protein [Function unk	86.28
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	83.63
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	81.5

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.6e-34  Score=275.56  Aligned_cols=357  Identities=50%  Similarity=0.823  Sum_probs=231.0

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++...+|++|++|+++||+++++.+.+..+|.++++.++..+...+.+.....+..-++.........++||++|.++++
T Consensus       133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~i  212 (502)
T TIGR00887       133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAV  212 (502)
T ss_pred             hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHH
Confidence            46788999999999999999999999999999999999887653221100000000000000000123589999999999


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCC---CC-CCcccccchhhHHhhhhhHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAP---VS-PEASTYGLFSKEFVQKHGLHLLG  157 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~  157 (402)
                      ++++.++.++++||||+|+..++++++++.+.+.+..+.+.+++.++.++.   ++ .+.+.++++++...+++.+..+.
T Consensus       213 p~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  292 (502)
T TIGR00887       213 PALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLG  292 (502)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHH
Confidence            999888888899999999866444444455556555443222221111111   11 11233444443333333344555


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHH
Q 042372          158 TTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGF  237 (402)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~  237 (402)
                      ....+++..+.+|+...+.|.++++.|++....+...+............+..++.+++.+++++++||+|||++++++.
T Consensus       293 ~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~  372 (502)
T TIGR00887       293 TAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGF  372 (502)
T ss_pred             HHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Confidence            55556666677888888899999888886543221111111112222344455667778889999999999999998888


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH
Q 042372          238 LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA  317 (402)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  317 (402)
                      .+++++++++.......  .              ..  .......+...++..+..+..+.+.+|++|++.|+++.|+.+
T Consensus       373 ~~~~~~~~~l~~~~~~~--~--------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~  434 (502)
T TIGR00887       373 FILTVLFFVLGFAYNHL--S--------------TH--GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISA  434 (502)
T ss_pred             HHHHHHHHHHHHHHHhc--c--------------hh--HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHH
Confidence            77777766665432100  0              11  112222222333345566678888999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHhhhcC--------CCchhhhHHHHHHHHHHHHHHhhcccCCCCCcccccc
Q 042372          318 AAGKAGAIVGAFGVQYYTQKGD--------KQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEELSG  376 (402)
Q Consensus       318 ~~~~~g~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~~~~~~  376 (402)
                      .+++++++++|.+.+.+.+..+        .++...|++++++.+++.+..+++|||++++++|+++
T Consensus       435 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       435 ASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEELSG  501 (502)
T ss_pred             HHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhhhC
Confidence            9999999999999999887421        1345678888888887777666669999998877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.5e-34  Score=262.14  Aligned_cols=328  Identities=19%  Similarity=0.220  Sum_probs=258.0

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      ...+.|+.|.+|++.||....+.+.+..+|.+++..++.--.                     ......|++.+.+..++
T Consensus       135 ~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i---------------------lGt~~~W~~l~~~~~i~  193 (485)
T KOG0569|consen  135 GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL---------------------LGTEDLWPYLLAFPLIP  193 (485)
T ss_pred             HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHh---------------------cCCCcchHHHHHHHHHH
Confidence            356789999999999999999999999999999988776544                     23566799999999999


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccC--------CCCCCCCCCcccccchhhHHhhhhhHH
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATS--------AYPAPVSPEASTYGLFSKEFVQKHGLH  154 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (402)
                      +++.++..+++||||+|+..++++++|+++.++..++.+.+++..        +.+..++++.+.++.++++..|+.  .
T Consensus       194 ~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~--~  271 (485)
T KOG0569|consen  194 ALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRP--L  271 (485)
T ss_pred             HHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHH--H
Confidence            999999999999999999887888899999999888775322211        111222245567788888777663  4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      .+.+.+....+..+.+....|...++.+.|++..++..            ......+..++.++++.++.||+|||++++
T Consensus       272 ~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~------------an~~~g~v~~~~t~~~~~lid~~gRRpLll  339 (485)
T KOG0569|consen  272 LIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQY------------ANLGIGIVNLLSTLVSPFLIDRLGRRPLLL  339 (485)
T ss_pred             HHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            45555555566678889999999999999999886554            666777778888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      .+..++.++.+++..........+            +.-.+..+....++...+..|+.|+.|.+.+|++|++.|+.+.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s  407 (485)
T KOG0569|consen  340 ISLSLMAVALLLMSIALFLSNSFG------------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS  407 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence            999998888877766543222110            01112233444555666788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCCCCcccccchhhh
Q 042372          315 ISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNGLSLEELSGEDKE  380 (402)
Q Consensus       315 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~~~~~~~~~~~~~  380 (402)
                      +...++++..++..+.++.+.+..+  - ..|+++.+.+++..+..+ ++||||+|+..|+.++.++
T Consensus       408 ~~~~~~w~~~fiv~~~fp~l~~~~g--~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~  471 (485)
T KOG0569|consen  408 VATAVNWLSNFIVGFAFPPLQNVIG--P-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK  471 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--c-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence            9999999999999999999999873  3 778888888888777777 4599999999888776443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.5e-33  Score=244.23  Aligned_cols=347  Identities=56%  Similarity=0.952  Sum_probs=276.7

Q ss_pred             CCCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         1 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      |||.+.+..+|.+..++||..++.+.+.+++|.+.|.+++..+...+..-++..        +-...-+.=||..|.+++
T Consensus       161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~--------~~~~~ld~vWRl~~glg~  232 (538)
T KOG0252|consen  161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGP--------STYPHLDGVWRIIFGLGA  232 (538)
T ss_pred             CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCC--------CCchHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999888876554322211        000112345999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      +|++..+..++.+|||++|.....++.+.+.++..+....+++++.+.. ...+.++....+|.....+++-+..+..+.
T Consensus       233 vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~-~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~  311 (538)
T KOG0252|consen  233 VPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAE-SDVPPPSNSFGLFSRLFLRWHGKHLLGTAG  311 (538)
T ss_pred             HHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccc-cCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999766565555555555544444333333331 122223344456666666667788999999


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .||...+.+|....+...+++++|+.+.....   ...+..+-....+...+.++|..+...++|++|||+..+.+++++
T Consensus       312 ~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~  388 (538)
T KOG0252|consen  312 TWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIM  388 (538)
T ss_pred             HHHhhhhhhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHH
Confidence            99999999999999999999999888776443   333445555677777888899999999999999999999999998


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      ++..+.++..+...                 .+...+.+++.+..+++.+|++.+...+.+|.+|++.|+++.|+....+
T Consensus       389 ~i~~~~~~~~y~~~-----------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~G  451 (538)
T KOG0252|consen  389 TIFFFVIAGPYNQL-----------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASG  451 (538)
T ss_pred             HHHHHHHcCCcccc-----------------cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhc
Confidence            88888777764421                 1223567777888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhh-----hcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCCcccccchh
Q 042372          321 KAGAIVGAFGVQYYTQ-----KGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEELSGED  378 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~~~~~~~~  378 (402)
                      .+|++++...+.++.+     ..  +.+.++++++.+++++.++.+++|||++++++|++.+.
T Consensus       452 K~GAivg~~~F~~~t~~~yp~~~--g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  452 KAGAIVGAFGFLYLTDHNYPPNI--GVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEE  512 (538)
T ss_pred             cchHHHHHHHhhHhhhccCCccc--cchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChh
Confidence            9999999999999988     44  78899999999999999999999999999999886553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=2.5e-29  Score=243.93  Aligned_cols=334  Identities=18%  Similarity=0.280  Sum_probs=226.3

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      +|++.++++|++|+++||+.++++.++..+|.++++.++..+....+..+.          .+......+||+++++.++
T Consensus       273 ~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~----------~g~~~~~~gWR~l~~i~~l  342 (742)
T TIGR01299       273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ----------MGSAYQFHSWRVFVIVCAF  342 (742)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhc----------cccccccccHHHHHHHHHH
Confidence            356789999999999999999999999999999999988877632211000          0001134579999999999


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccc-------------cC-CCC---CCCCCCcc------
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVA-------------TS-AYP---APVSPEAS------  138 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~---~~~~~~~~------  138 (402)
                      ++++.+++.+++||||+|+.. +++.+++.+.+.++.+.+....             .. ..+   +.+++...      
T Consensus       343 p~ll~ll~~~~lPESPrwL~~-~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (742)
T TIGR01299       343 PCVFAIGALTFMPESPRFFLE-NGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCF  421 (742)
T ss_pred             HHHHHHHHHHHcCCCHHHHHH-CCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcch
Confidence            998888888899999999854 5667788887777665432100             00 000   00000000      


Q ss_pred             ---------cccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc----------------------CCch
Q 042372          139 ---------TYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPAT----------------------GIVR  187 (402)
Q Consensus       139 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------g~~~  187 (402)
                               .+..++....+++++..+.+++.+++..+.+|++..|+|.++.+.                      +++.
T Consensus       422 ~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (742)
T TIGR01299       422 VRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTL  501 (742)
T ss_pred             hhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccch
Confidence                     001111111223445678888899999999999999999876432                      0000


Q ss_pred             hh-------------hhh-----------------------hHH------------------------------------
Q 042372          188 KA-------------AAM-----------------------DAI------------------------------------  195 (402)
Q Consensus       188 ~~-------------~~~-----------------------~~~------------------------------------  195 (402)
                      ..             .++                       +.+                                    
T Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (742)
T TIGR01299       502 ENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKE  581 (742)
T ss_pred             hhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCC
Confidence            00             000                       000                                    


Q ss_pred             ---------HHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 042372          196 ---------EEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPL  266 (402)
Q Consensus       196 ---------~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (402)
                               ...........++..++.++|.+++|+++||+|||++++++.++.+++++++.+.                
T Consensus       582 ~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~----------------  645 (742)
T TIGR01299       582 GCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG----------------  645 (742)
T ss_pred             ccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence                     0000122334566778889999999999999999999999888888877766653                


Q ss_pred             CccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhh
Q 042372          267 HEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSI  346 (402)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~  346 (402)
                           .+....+++..+ ..++..+..+...++++|++|++.|++++|+.+...++|++++|++.+.+...   +...+|
T Consensus       646 -----~s~~~ll~~~~l-~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~---~~~~pf  716 (742)
T TIGR01299       646 -----NSESAMIALLCL-FGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI---TKAAPI  716 (742)
T ss_pred             -----ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHH
Confidence                 111222222222 22323344567778899999999999999999999999999999999988764   556788


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCCc
Q 042372          347 IALAVVNFLGFLCSFMVPETNGLSL  371 (402)
Q Consensus       347 ~~~~~~~~~~~~~~~~l~et~~~~~  371 (402)
                      ++.+++.+++.++.+++|||+++.+
T Consensus       717 ~i~a~~lll~~ll~~~LPET~~~~l  741 (742)
T TIGR01299       717 LFASAALACGGLLALKLPDTRGQVL  741 (742)
T ss_pred             HHHHHHHHHHHHHHHhCCCCccccc
Confidence            8888888888888778899988753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.96  E-value=3.9e-27  Score=224.06  Aligned_cols=303  Identities=14%  Similarity=0.145  Sum_probs=190.2

Q ss_pred             CCCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         1 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      +++.+.++++|++|+++||++.++.+.+..+|.++++.+...+.....+.               ....+|||++|++++
T Consensus       135 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~---------------~~~~~gWR~~f~i~~  199 (490)
T PRK10642        135 EYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEA---------------NFLDWGWRIPFFIAL  199 (490)
T ss_pred             hHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------------HhcCccHHHHHHHHH
Confidence            45778899999999999999999999999999998887776654322110               114689999999988


Q ss_pred             HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      +++++.++++.++||||+|...+++ .++..       .       +...  ++++.+..+.+     +++++.+.....
T Consensus       200 ~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~-------~-------~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~  257 (490)
T PRK10642        200 PLGIIGLYLRHALEETPAFQQHVDK-LEQGD-------R-------EGLQ--DGPKVSFKEIA-----TKHWRSLLTCIG  257 (490)
T ss_pred             HHHHHHHHHHHcCCCChhHHHHHHh-hhhhc-------c-------cccc--ccccCCHHHHH-----HHhHHHHHHHHH
Confidence            8777777777789999998432111 00000       0       0000  00111112222     222233333334


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      ..++....+|....|.|.++++ .|++......            ......++.+++.++.|+++||+|||+.++.+.++
T Consensus       258 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~  325 (490)
T PRK10642        258 LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVL------------IIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVA  325 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4445556788888899999865 6777654322            45556677778888999999999999988877654


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ..++...+.....  .                ...........+...+ ..........+..|.+|++.|+++.|+.+..
T Consensus       326 ~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~~g~~-~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~  386 (490)
T PRK10642        326 LFVLAIPAFILIN--S----------------NVIGLIFAGLLMLAVI-LNCFTGVMASTLPAMFPTHIRYSALAAAFNI  386 (490)
T ss_pred             HHHHHHHHHHHHh--C----------------CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCccchHHHHHHHHH
Confidence            3332222111110  0                1111111111111111 1111223445567999999999999987777


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCCcc
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLE  372 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~~  372 (402)
                      ..+++.++|.+.+++.+..+ +|..++++..+..+++.+..+++||++++..+
T Consensus       387 ~~~~g~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~  438 (490)
T PRK10642        387 SVLVAGLTPTLAAWLVESTQ-NLMMPAYYLMVVAVIGLITGVTMKETANRPLK  438 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence            88888899999998887543 46666666666777777776777998776543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=1.9e-26  Score=196.97  Aligned_cols=315  Identities=17%  Similarity=0.264  Sum_probs=222.1

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      +|...++-.|..|..+|+.-+... ..+.+|.++...++..+.                       .+.||||.....+.
T Consensus       183 ~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm-----------------------~~~gwr~~l~~~~~  238 (528)
T KOG0253|consen  183 LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM-----------------------SNFGWRYLLFTSST  238 (528)
T ss_pred             ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH-----------------------HhhhHHHHHHHHHh
Confidence            466677888999999999988888 899999999999999988                       77899999999888


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhcccccc-------------ccCC---CCCC-----CCCCcccc
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINV-------------ATSA---YPAP-----VSPEASTY  140 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---~~~~-----~~~~~~~~  140 (402)
                      |..+.....+++|||||+... +++++++.+.+.++.+.|-.+             +.++   .++.     ++...+..
T Consensus       239 pl~~~a~f~~w~~ESpRf~~~-~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~  317 (528)
T KOG0253|consen  239 PLMFAARFLVWVYESPRFYLA-KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTT  317 (528)
T ss_pred             HHHHHHHHHhhcccCcchhhh-cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchH
Confidence            888888888999999999866 778888888888877654110             0000   0111     11112223


Q ss_pred             cchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcC---Cchh----hhhhhHH-HHHHHHHHHHHHHHHhh
Q 042372          141 GLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATG---IVRK----AAAMDAI-EEVFRISKAMFLVALFA  212 (402)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~----~~~~~~~-~~~~~~~~~~~~~~~i~  212 (402)
                      +++.. .+|+   ..+..+..++...+.||+.......+++...   ....    +...... .........-..+..++
T Consensus       318 nLlsp-~lrk---ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitsla  393 (528)
T KOG0253|consen  318 NLLSP-KLRK---TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLA  393 (528)
T ss_pred             hhcCh-HHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHh
Confidence            33333 3333   5677778888888899988877766665421   1111    1000000 00001112245667788


Q ss_pred             hcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCC
Q 042372          213 TVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGP  292 (402)
Q Consensus       213 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (402)
                      .++|.++.++++||+|||+.+...+++.+++.+.+.....                   .+  ....+.+..-.+ ..+.
T Consensus       394 efPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~-------------------rn--~~tvllf~araf-isg~  451 (528)
T KOG0253|consen  394 EFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT-------------------RN--AYTVLLFTARAF-ISGA  451 (528)
T ss_pred             hCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC-------------------cc--hhHHHHHHHHHH-Hhch
Confidence            9999999999999999999999998888887776665421                   11  222222223333 3444


Q ss_pred             cccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCCCCc
Q 042372          293 NSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNGLSL  371 (402)
Q Consensus       293 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~~~~  371 (402)
                      +.+.++|+.|++|+..|+++.|.+...+++|+++.|++. ...+.   +-..+..+++++.+++.+...++ -||++|+.
T Consensus       452 fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~---s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  452 FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL---STSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc---ceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            568999999999999999999999999999999999988 33333   45577788888888888888877 58998864

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=6e-27  Score=223.02  Aligned_cols=320  Identities=18%  Similarity=0.199  Sum_probs=204.7

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      +|.+.++++|++|+++||+++++.+.+..+|.++++.+++.+......               ......+||++|++.++
T Consensus       138 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~---------------~~~~~~gWr~~f~~~~~  202 (479)
T PRK10077        138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA---------------SWLNTDGWRYMFASEAI  202 (479)
T ss_pred             hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---------------cccccCChHHHHHHHHH
Confidence            467889999999999999999999999999999998887766521100               01245799999999888


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhH------Hhhhhh-HH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKE------FVQKHG-LH  154 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~  154 (402)
                      +.++..+..+++||+|+|+.. +++.+++.+...+..+.+..++  ..       ...++..+.+      ...... ..
T Consensus       203 ~~~~~~~~~~~l~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  272 (479)
T PRK10077        203 PALLFLMLLYFVPETPRYLMS-RGKQEQAEGILRKIMGNTLATQ--AL-------QEIKHSLDHGRKTGGKLLMFGVGVI  272 (479)
T ss_pred             HHHHHHHHHHcCCCCcHHHHH-cCCHHHHHHHHHHHcCChhHHH--HH-------HHHHHHHHHhhhhhhhhcchhHHHH
Confidence            888777777889999998644 3444444433333221110000  00       0000000000      000000 01


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      ........+....+++...++.|.+.++.|.+......            ......+..+++.+++++++||+|||++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~------------~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i  340 (479)
T PRK10077        273 VIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALL------------QTIIVGVINLTFTVLAIMTVDKFGRKPLQI  340 (479)
T ss_pred             HHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHH------------HHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            11111222223334555667788888888877653322            444556677788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      .+.++++++.+++......  +               ......................+..+.+++|.+|++.|+++.|
T Consensus       341 ~~~~~~~v~~~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g  403 (479)
T PRK10077        341 IGALGMAIGMFSLGTAFYT--Q---------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALA  403 (479)
T ss_pred             HhHHHHHHHHHHHHHHHhc--C---------------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHH
Confidence            9988888877766543221  0               1111122222222222333444667888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHh------hhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCCCCcccccch
Q 042372          315 ISAAAGKAGAIVGAFGVQYYT------QKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNGLSLEELSGE  377 (402)
Q Consensus       315 ~~~~~~~~g~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~~~~~~~~~~  377 (402)
                      +.+..++++.++++.+++.+.      +..  ++...|++++++.+++.++.++ .||+++++.+|.++.
T Consensus       404 ~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        404 IAVAAQWIANYFVSWTFPMMDKNSWLVAHF--HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL  471 (479)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhccchhhhc--cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence            999999999999988877655      233  6777888888777777776664 499998877665443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=3e-26  Score=218.80  Aligned_cols=325  Identities=23%  Similarity=0.278  Sum_probs=231.5

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA   83 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~   83 (402)
                      +++.|++|++|++.||...+..+....+|..++..++....+                      ..++||+.+.+..+++
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~----------------------~~~~Wr~~~~~~~i~~  219 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK----------------------VYAGWRIPLGLALIPA  219 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc----------------------CCccHHHHHHHHHHHH
Confidence            578999999999999999999999999999999666665531                      1168999999999999


Q ss_pred             HHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccc---cccCCCC------CCCCCCc-ccccchhhHHhhhhhH
Q 042372           84 ALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDIN---VATSAYP------APVSPEA-STYGLFSKEFVQKHGL  153 (402)
Q Consensus        84 ~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~  153 (402)
                      ++..+..+++||||+|+.. +++.+++++.+.+..+.+.+   .+.++..      ....+.+ ...+++.+..   .++
T Consensus       220 ~~~~~~~~~~pesp~~L~~-~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~  295 (513)
T KOG0254|consen  220 VILALGMLFLPESPRWLIE-KGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKV---RKR  295 (513)
T ss_pred             HHHHHHHHhCCCChHHHHH-cCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcch---HHH
Confidence            9987778889999999854 67778888888877763211   1111100      0000111 1222333111   223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .++...+..+.+..+++...+|.+.+++..|..... ..            ...+..+..+++..++.++.||+|||+++
T Consensus       296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~------------~~~~~~~v~~~~t~~~~~lvd~~gRr~ll  362 (513)
T KOG0254|consen  296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FL------------ASIILGVVNFLGTLVATYLVDRFGRRKLL  362 (513)
T ss_pred             HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            566677777777788888999999999998877542 11            44444555566666779999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      +.+...+.+++++++............         .....+..+....+....+..+..++.|.+.+|.+|.+.|+.+.
T Consensus       363 l~s~~~m~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~  433 (513)
T KOG0254|consen  363 LFGAAGMSICLVILAVVGVFALYYPNS---------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGA  433 (513)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhccCCCc---------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhH
Confidence            999999999998887765432221000         00223344445555566667888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHH-HHh-hcccCCCCCcccccchh
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFL-CSF-MVPETNGLSLEELSGED  378 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~et~~~~~~~~~~~~  378 (402)
                      ++...++++.+++....+.......  +....|..++....+... +.+ ++|||++++++|+++..
T Consensus       434 s~~~~~n~~~~~~v~~~~~~~~~~~--~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~  498 (513)
T KOG0254|consen  434 SLAVAVNWLWNFLISFFFPFITEAL--GIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF  498 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence            9999999999988777777776654  335666666666666665 444 55999999999887753

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.95  E-value=1.2e-31  Score=253.18  Aligned_cols=325  Identities=27%  Similarity=0.409  Sum_probs=221.9

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++.+.+|+.|.+|+++|++..++.+.+..+|.+++..++..+..                    ..+.++||+.++++++
T Consensus       120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~--------------------~~~~~~Wr~~~~~~~~  179 (451)
T PF00083_consen  120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY--------------------YSDNWGWRILLIFGAI  179 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc--------------------cccccccccccccccc
Confidence            56788999999999999999999999999999999888766531                    1124679999999999


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhcccccccc-CC----CCCCCCCCcccccchhhHHhhhhhHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVAT-SA----YPAPVSPEASTYGLFSKEFVQKHGLHLL  156 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (402)
                      ++++.++..+++||||+|+.. +++.+|+++.+++..+.+.+++. ++    .++.++++.+..++++++..++  +..+
T Consensus       180 ~~l~~~~~~~~~pESP~wL~~-~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~  256 (451)
T PF00083_consen  180 PSLLVLLLRFFLPESPRWLLS-KGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRK--RLLI  256 (451)
T ss_pred             ccccccccccccccccceecc-cccccccccccccccccccccccccccccccccccccceeeeeccccccccc--cccc
Confidence            998888888899999999955 55666777777775444322211 11    1111111223444444433222  2333


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372          157 GTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG  236 (402)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~  236 (402)
                      ...+..+....+++....|.+.++++.+.+...  .            ......+..+++.+++.+++||+|||++++.+
T Consensus       257 ~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~  322 (451)
T PF00083_consen  257 ALLLQFFQQFSGINFIFYYSPSIFENAGISNSF--L------------ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIG  322 (451)
T ss_pred             ccccccccccccccccccccccccccccccccc--c------------cccccccccccccccccccccccccccccccc
Confidence            333333343445566677778888877766551  1            34445566777777888999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372          237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS  316 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  316 (402)
                      ..+++++.+.++.... ....+.           +......+....+.......+..+..+.+++|++|++.|+++.++.
T Consensus       323 ~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~  390 (451)
T PF00083_consen  323 LLLMAICSLILGIIFF-LGVSSS-----------SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLS  390 (451)
T ss_pred             cccccccccccccccc-cccccc-----------cccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence            8887777766651111 111100           0011222233333334445677788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCCCCcccccch
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNGLSLEELSGE  377 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~~~~~~~~~~  377 (402)
                      ...+++++++++.+.+.+.+..  +....+.+++++.++..++.+ ++|||++++++|+++.
T Consensus       391 ~~~~~i~~~i~~~~~~~~~~~~--~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  391 YAVGRIGGFIIPFLFPYLFNNL--GGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             cccccccccccccccccccccc--cccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            9999999999999988888765  434667777777776666655 5699999999988653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00898 2A0119 cation transport protein

Probab=99.95  E-value=6.2e-26  Score=217.37  Aligned_cols=299  Identities=18%  Similarity=0.300  Sum_probs=199.3

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++...+++.|++|+++|+++.++.+.+..+|.++++.+++.+.                          +||+.|++.++
T Consensus       198 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------------~wr~~~~~~~i  251 (505)
T TIGR00898       198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--------------------------DWRWLQLAVSL  251 (505)
T ss_pred             HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------HHHHHHHHHHH
Confidence            3567789999999999999999999999999999999887663                          29999999998


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccC---CC--CC---CCCCCcccccchhhHHhhhhhH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATS---AY--PA---PVSPEASTYGLFSKEFVQKHGL  153 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~---~~~~~~~~~~~~~~~~~~~~~~  153 (402)
                      +.++..+..+++||||+|+.. +++.+++.+.+.+..+.+.....+   +.  ++   .+.++.+.+++++++..++   
T Consensus       252 ~~~~~~~~~~~~~esp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  327 (505)
T TIGR00898       252 PTFLFFLLSWFVPESPRWLIS-QGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRK---  327 (505)
T ss_pred             HHHHHHHHHHhcCCChHHHHH-CCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHH---
Confidence            888877777889999999854 555566666555544322111000   00  00   0011123334444433322   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      ..+.....++.....++....+.+.    .+.+...               ......+..+++.++.+++.||+|||+.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~~~~~~~~i~~~~~~~~l~dr~grr~~~  388 (505)
T TIGR00898       328 TTLCLMMLWFTTAFSYYGLVLDLGN----LGGNIYL---------------DLFISGLVELPAKLITLLLIDRLGRRYTM  388 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccc----cCCChHH---------------HHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            3444444555555555555444433    3333211               33344566777888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      .++.++.+++++++.....                   ...+...... +...++..+..+..+++.+|.+|++.|+++.
T Consensus       389 ~~~~~~~~~~~l~~~~~~~-------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  448 (505)
T TIGR00898       389 AASLLLAGVALLLLLFVPV-------------------DLYFLRTALA-VLGKFGITSAFQMVYLYTAELYPTVVRNLGV  448 (505)
T ss_pred             HHHHHHHHHHHHHHHHcCC-------------------CchHHHHHHH-HHHHHHHHHHHHHHHHHhcccccHHHHhhhH
Confidence            9888777777665544311                   1111222222 2222222333456677889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCCccc
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLSLEE  373 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~~~  373 (402)
                      |+.+...++|++++|.+.+ +.+.   ++..++.+++++.+++.++.+++|||+++++++
T Consensus       449 g~~~~~~~ig~~i~p~i~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       449 GVCSTMARVGSIISPFLVY-LGEK---WLFLPLVLFGGLALLAGILTLFLPETKGVPLPE  504 (505)
T ss_pred             hHHHHHHHHHHHHHhHHHH-HHHH---HHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence            9999999999999999988 4433   566788888888888888888889999877654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.94  E-value=5.4e-25  Score=209.50  Aligned_cols=320  Identities=24%  Similarity=0.313  Sum_probs=207.4

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVIS---LIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG   79 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~   79 (402)
                      +...+++.|++|+++|++++++.+.+..+|.++++.++   ....                       ...+||+.|++.
T Consensus       146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----------------------~~~~w~~~f~~~  202 (481)
T TIGR00879       146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN-----------------------NTLGWRIPLGLQ  202 (481)
T ss_pred             hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC-----------------------CCccHHHHHHHH
Confidence            55678999999999999999999999999999999998   3322                       567899999998


Q ss_pred             hHHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccC-C---------CCCCCCCCcccccchhhHHhh
Q 042372           80 AVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATS-A---------YPAPVSPEASTYGLFSKEFVQ  149 (402)
Q Consensus        80 ~i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~  149 (402)
                      ++..++.++..+++||+|+++.. +++.+++.+...+..+.+.++... +         ..+.+..+....+.++. ..+
T Consensus       203 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  280 (481)
T TIGR00879       203 LIPAGLLFLGLFFLPESPRWLVG-KGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSS-TRR  280 (481)
T ss_pred             HHHHHHHHHHHhcCCCChHHHHH-cCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhc-Cch
Confidence            77777777777889999987543 333333333222221111000000 0         00000000001111110 000


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch
Q 042372          150 KHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR  229 (402)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr  229 (402)
                      ..++.++...+..+...........+.|.+.++.|++....+.            ......++.+++.++.++++||+||
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~~~  348 (481)
T TIGR00879       281 IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFL------------VSIIVGAVNFAFTFVAIFLVDRFGR  348 (481)
T ss_pred             hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            0122344444444444444455667788888888887754332            6666777788888899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhh
Q 042372          230 FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLR  309 (402)
Q Consensus       230 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  309 (402)
                      |+.+.++..+.+++.+++........... + +         ...........+...+...+..+....++.|.+|++.|
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  417 (481)
T TIGR00879       349 RPLLLIGAAGMAICLFVLGILGASFVTGS-S-K---------SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR  417 (481)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccCCc-c-c---------chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHH
Confidence            99998887777777666653322111100 0 0         01222233333333444455556777788999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCCCCcc
Q 042372          310 STCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNGLSLE  372 (402)
Q Consensus       310 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~~~~~  372 (402)
                      +++.++.+...+++++++|.+.+.+.+..  +|...|++.+++++++.++.++ .||+++++.+
T Consensus       418 ~~~~~~~~~~~~lg~~i~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       418 PKGISIAVAANWLANFIVGFLFPTMLESI--GVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            99999999999999999999999988876  8888999988888887777664 4888766543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=99.94  E-value=1.1e-24  Score=204.33  Aligned_cols=293  Identities=15%  Similarity=0.148  Sum_probs=185.5

Q ss_pred             CCCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         1 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      ++|.+..++.|++|+++|++..+..+.+..+|.+++..+...+.....+.               ....+|||++|++++
T Consensus       142 ~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~---------------~~~~~gWr~~f~~~~  206 (438)
T PRK09952        142 EWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDE---------------QFLSWGWRIPFLFSI  206 (438)
T ss_pred             cHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---------------HhhccChHHHHHHHH
Confidence            45677889999999999999999999999999999988777665322210               113579999999998


Q ss_pred             HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      ++.++.++++..+||+|+|...+.+. ++.                       +++...    .+. .+++++.......
T Consensus       207 ~~~l~~~~l~~~~~es~~~~~~~~~~-~~~-----------------------~~~~~~----~~~-l~~~~~~~~~~~~  257 (438)
T PRK09952        207 VLVLIALWVRNGMEESAEFEQQQHEQ-AAA-----------------------KKRIPV----IEA-LLRHPGAFLKIIA  257 (438)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHhhc-ccc-----------------------cccCCH----HHH-HHHchHHHHHHHH
Confidence            88777666677789999873221010 000                       000000    111 1122223333333


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      ..++....+|....|.|.++++ .|++......            ......+..+++.++.|+++||+|||+.++.+.++
T Consensus       258 ~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~------------~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~  325 (438)
T PRK09952        258 LRLCELLTMYIVTAFALNYSTQNLGLPRELFLN------------IGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALI  325 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            4445555677777788888754 6766543111            23334455666777899999999999988877665


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ..++...+.....  .                .+....++...+..++......+..+++.+|.+|++.|+++.++.+..
T Consensus       326 ~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~  387 (438)
T PRK09952        326 GTLSAFPFFMALE--A----------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQV  387 (438)
T ss_pred             HHHHHHHHHHHHH--c----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHH
Confidence            5444332222111  0                111122222222222222222345667889999999999999997776


Q ss_pred             HH-HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          320 GK-AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       320 ~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      +. +++.++|.+.+++.+..+.+|...+.+.+++.+++.+..+.++|++
T Consensus       388 ~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        388 ASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ  436 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence            55 7889999999999885532577778877788888877777667643

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.3e-24  Score=190.34  Aligned_cols=291  Identities=16%  Similarity=0.203  Sum_probs=210.4

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVIS--LIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG   79 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~   79 (402)
                      +|.+...++.|+|+++||+..++++++.++|..+.+++.  +.+.                       .+.+||..|++.
T Consensus       135 wpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~-----------------------~~~~w~~~f~~p  191 (448)
T COG2271         135 WPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA-----------------------FHGGWRAAFYFP  191 (448)
T ss_pred             CcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH-----------------------hccchhHHHHHH
Confidence            678889999999999999999999999999999999988  6665                       566899999998


Q ss_pred             hHHHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCC-CcccccchhhHHhhhhhHHHHH
Q 042372           80 AVPAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSP-EASTYGLFSKEFVQKHGLHLLG  157 (402)
Q Consensus        80 ~i~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  157 (402)
                      ++.+++ .+++++.++|+|+-.-.  ...+|.       .++..+.+    ++++++ ..+.++.+.+-.+++  +.++.
T Consensus       192 giiaiival~~~~~~rd~Pqs~GL--P~ie~~-------~~d~~e~~----~~~~~~~~ls~~~i~~~YVL~N--k~iW~  256 (448)
T COG2271         192 GIIAIIVALILLFLLRDRPQSEGL--PPIEEY-------RGDPLEIY----EEEKENEGLTAWQIFVKYVLKN--KLIWL  256 (448)
T ss_pred             HHHHHHHHHHHHHHhCCCccccCC--CCHHHh-------hcCchhhh----hhhccCCCccHHHHHHHHHHcC--hHHHH
Confidence            888776 56666778999864211  111111       11111111    111111 245566666666655  36778


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chhHHHH
Q 042372          158 TTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRFIIQL  234 (402)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~  234 (402)
                      +.+..+.....-|++..|.|.|+.+ .|++..++..            ..+..=.+.++|++++|+++||+  |||....
T Consensus       257 la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~------------a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~  324 (448)
T COG2271         257 LALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANW------------AISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA  324 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHH------------HHHHHHHHhhHHHHHHHHHHHHhcccccchHH
Confidence            8888888888999999999999987 7788776554            77778889999999999999997  6776655


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      +.+.+....+++...    ...               +.+..+..++....++...++.-+.-..+.|..|++..|++.|
T Consensus       325 ~i~~~~i~~~~~~~w----~~~---------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~G  385 (448)
T COG2271         325 LIFMLLITASLVLYW----LAP---------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATG  385 (448)
T ss_pred             HHHHHHHHHHHHHHH----cCC---------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhc
Confidence            443322222222211    111               2233444445555555567776566667799999999999999


Q ss_pred             HHHHHHHH-HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          315 ISAAAGKA-GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       315 ~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +...++++ |...+....+++.+..  +|...|+++.+.++++.++...+
T Consensus       386 f~Glf~Yl~Ga~~a~~~~g~i~d~~--gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         386 FVGLFAYLIGAALAGLPLGYIADTW--GWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hhhhHHHHhhHHhcCCcceeeEecC--CCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999 8888889999998886  99999999988888887776644

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=1.3e-22  Score=190.27  Aligned_cols=287  Identities=21%  Similarity=0.207  Sum_probs=171.6

Q ss_pred             CCCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            1 DYPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         1 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      ++|.+.++++|++|+++||++.++.+.+...|.++++.+...+.....+.               ....+|||++|++++
T Consensus       141 ~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~---------------~~~~~gWr~~F~i~~  205 (432)
T PRK10406        141 EYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA---------------ELREWGWRIPFALGA  205 (432)
T ss_pred             hHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---------------HHhccchHHHHHHHH
Confidence            46888999999999999999999999999999988888766654322110               113579999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      +++++.++++..+||+|++..  ++  .+                         ++.+.++.++      +++..+....
T Consensus       206 ~~~ll~~~~~~~~~e~~~~~~--~~--~~-------------------------~~~~~~~l~~------~~~~~~~~~~  250 (432)
T PRK10406        206 VLAVVALWLRRQLDETSQQET--RA--LK-------------------------EAGSLKGLWR------NRRAFIMVLG  250 (432)
T ss_pred             HHHHHHHHHHhcCCCCchHHH--hh--hc-------------------------ccccHHHHHh------hHHHHHHHHH
Confidence            988887777777899876411  00  00                         0111112221      1122222222


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      ..+.....+|....|.|.++++ .|++..+.+.            ...+..++..++.++.|+++||+|||+.++++..+
T Consensus       251 ~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~------------~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~  318 (432)
T PRK10406        251 FTAAGSLCFYTFTTYMQKYLVNTAGMHANVASG------------IMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSL  318 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            2333355677788889998865 6877654332            44444555566677889999999999987766554


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      .++....+.....  ..               ........+..+..+... ...+..+.+.+|.+|++.|+++.|+.+..
T Consensus       319 ~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        319 AALFTVPILSALQ--NV---------------SSPYAAFGLVMCALLIVS-FYTSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             HHHHHHHHHHHHH--cC---------------CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            3333221211110  00               111111111111111111 11224556779999999999999999988


Q ss_pred             HHH-HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCC
Q 042372          320 GKA-GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLS  370 (402)
Q Consensus       320 ~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~  370 (402)
                      +++ .+...|.+.+.+ +..+ .+...+++.++..+++.+..+++ ++++|+
T Consensus       381 g~~~~g~~~p~~~~~l-~~~g-~~~~~~~~~~~~~~i~~~~~~~l-~~~~~~  429 (432)
T PRK10406        381 ANALFGGSAEYVALSL-KSIG-METAFFWYVTLMAVVAFLVSLML-HRKGKG  429 (432)
T ss_pred             HHHHHHhHHHHHHHHH-HHhC-CCcHHHHHHHHHHHHHHHHHHHh-hhcccc
Confidence            775 344577777755 4332 35555666566666666655554 333443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.91  E-value=2.5e-22  Score=188.41  Aligned_cols=294  Identities=13%  Similarity=0.090  Sum_probs=180.7

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++...+++.|++|+++|++++++.+.+..+|.++++.+++.+.                       +.++||+.|++.++
T Consensus       129 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~gw~~~f~~~~i  185 (434)
T PRK11663        129 WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA-----------------------LHYGWRYGMMIAGI  185 (434)
T ss_pred             chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HcccHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999887                       56789999998877


Q ss_pred             HHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 PAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      +.++ .++..+++||+|++...  ...++..+        +   ..+..++.+.++.+..+.++....++  +.++....
T Consensus       186 ~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  250 (434)
T PRK11663        186 IAIVVGLFLCWRLRDKPQAMGL--PSVGEWRH--------D---ALELAQQQEGAGLSRKEILTKYVLLN--PYIWLLSF  250 (434)
T ss_pred             HHHHHHHHHHHHcCCCHhhcCC--CCcccccc--------c---ccccchhccccCCChhhhHHHHHhcC--hHHHHHHH
Confidence            6654 34455668998764211  10000000        0   00000000000111112222112221  23444444


Q ss_pred             HHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chh-HHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRF-IIQLGG  236 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr-~~~~~~  236 (402)
                      ..+.....++....|.|.++. +.|++..+.+.            ......++.+++.++.|+++||+  ++| ......
T Consensus       251 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~------------~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~  318 (434)
T PRK11663        251 SYVLVYVVRAAINDWGNLYMSETLGVDLVTANS------------AVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF  318 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH------------HHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence            444455556677778888885 47888775443            66667788889999999999998  333 322222


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372          237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS  316 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  316 (402)
                      .+...+....+....    .               .+... .....+..+++..++......+..|.+|++.|+++.|+.
T Consensus       319 ~~~~~~~~~~~~~~~----~---------------~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  378 (434)
T PRK11663        319 AAGILLSVGSLWLMP----F---------------ASYVM-QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFV  378 (434)
T ss_pred             HHHHHHHHHHHHHcc----c---------------ccHHH-HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHH
Confidence            111121111111110    0               11111 111122222222222223334568999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETN  367 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~  367 (402)
                      ++..++|.+++|.+.+++.+..  +|...|.+.+++.+++.+..+.. ++.+
T Consensus       379 ~~~~~~g~~~~p~~~g~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~  428 (434)
T PRK11663        379 GLFAYLGAALSGYPLAKVLEIW--HWTGFFVVISIAAGISALLLLPFLNAQA  428 (434)
T ss_pred             HHHHHHHHHHhcccHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999987  89999999888888777666544 4433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.90  E-value=3.9e-22  Score=185.87  Aligned_cols=273  Identities=21%  Similarity=0.265  Sum_probs=181.2

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|++|+++|++++++.+.+..+|.++++.++..+.                       ...+||+.|++.++.
T Consensus       122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~  178 (406)
T PRK11551        122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA-----------------------GDAAWRHIFYVGGVG  178 (406)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------------cccCHHHHHHHHHHH
Confidence            456788999999999999999999999999999999987765                       667899999987765


Q ss_pred             HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++ .++...++||+|++..  ++.+++..                        +......++....    +........
T Consensus       179 ~~~~~~~~~~~l~~~~~~~~--~~~~~~~~------------------------~~~~~~~~~~~~~----~~~~~~~~~  228 (406)
T PRK11551        179 PLLLVPLLMRWLPESRAFAQ--AAGAGKQR------------------------APVLRALFGEGRA----TATLLLWIS  228 (406)
T ss_pred             HHHHHHHHHHhCCCChhHHh--ccCcchhh------------------------hhhHHHHhhhhhh----hHHHHHHHH
Confidence            554 3445556899886532  11110000                        0000001111111    112222233


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  241 (402)
                      .+......+....+.|.++++.|++..+.+.            ......++.+++.++.|++.||+|||+.+..+.....
T Consensus       229 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  296 (406)
T PRK11551        229 YFFTLIVLYFLLNWLPSLLVGQGLSRSQAGL------------VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL  296 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3333445566677889998888888775444            6666778888999999999999999998887655554


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK  321 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  321 (402)
                      ++...+...                     .+.+. ..+..+..++...+..+..+++..|.+|++.|+++.|+.+....
T Consensus       297 ~~~~~~~~~---------------------~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  354 (406)
T PRK11551        297 ASLAALAAA---------------------PSFAG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR  354 (406)
T ss_pred             HHHHHHHhc---------------------CcHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhh
Confidence            444433321                     11112 22222223333334455667788999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +|..++|.+.+.+.+..+ ++...+.......+++.++.+++
T Consensus       355 ~g~~~g~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        355 LGSMAGPLLAGQLLALGR-STVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHhhhHhhhhccCC-chHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988643 45566666666666666655544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.90  E-value=5.4e-22  Score=181.02  Aligned_cols=263  Identities=13%  Similarity=0.062  Sum_probs=170.7

Q ss_pred             hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      ....++|++|+++|++++++.+.+..+|.++++.++..+.                       ..+|||+.|++.+++++
T Consensus        99 ~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~-----------------------~~~gWr~~f~~~~~l~~  155 (368)
T TIGR00903        99 AFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY-----------------------TAGGLQLLIIPIAAVAA  155 (368)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HccchHHHHHHHHHHHH
Confidence            4566799999999999999999999999999999999987                       56899999999666655


Q ss_pred             H-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           85 L-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        85 ~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      + .++.++++||+|++.   ++..+. .+.                      .+..    + +.+++  +.++......+
T Consensus       156 ~~~~~~~~~lp~~p~~~---~~~~~~-~~~----------------------~~~~----~-~ll~~--~~~~~~~~~~~  202 (368)
T TIGR00903       156 AGIILVLAALPALPFQA---AEGFGF-KDA----------------------VKEF----G-ALAGR--KDLWIIGAILG  202 (368)
T ss_pred             HHHHHHHHHcCCCCCCC---CCCcch-HHH----------------------HHHH----H-HHHcC--hhHHHHHHHHH
Confidence            5 455667799998762   111000 000                      0001    1 12222  24566666777


Q ss_pred             HHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh---HHHHH-HHHH
Q 042372          164 LLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF---IIQLG-GFLL  239 (402)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr---~~~~~-~~~~  239 (402)
                      +....++++..|+|.++++.|++.. .+.            ...+..+...+   ..++++||..||   +.... ..++
T Consensus       203 ~~~~~~~~~~~wlp~~L~~~g~s~~-~~~------------~~~l~~~~g~~---g~~~~~d~~~r~~~r~~~~~~~~~~  266 (368)
T TIGR00903       203 FGVALFDNLAIWLEAALRPAGLEDI-AGD------------AVALAILAGLI---GVAVIPDRVARAGLRSIYIRAAALL  266 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCChH-HHH------------HHHHHHHHHHH---HHHHhhHHhhhhhhHHHHHHHHHHH
Confidence            7778888999999999988777643 222            22233333333   357788887543   33222 2222


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      .++....+...                     .+.... .......+++..+..+..+++.+|.+|++.|+++.|+.+..
T Consensus       267 ~a~~~~~~~~~---------------------~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~  324 (368)
T TIGR00903       267 IAAFFLALAFE---------------------LNRLAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFT  324 (368)
T ss_pred             HHHHHHHHHHc---------------------cccHHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHH
Confidence            22222222211                     111122 22222222334444455778889999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhccc
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPE  365 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  365 (402)
                      ++++++++|.+.+.+..    +....|.++++..+++.+..+.+++
T Consensus       325 g~~~~~~~~~~~~~~~~----~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       325 SRAISVALALAAMLFIS----SAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999998887773    6667788888888887777654443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.90  E-value=9.3e-22  Score=183.06  Aligned_cols=292  Identities=11%  Similarity=0.130  Sum_probs=176.0

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      +|....++.|++|+++|++++++++.+.++|.++++.+++.+.....                 ..+..|||+.|++.++
T Consensus       114 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----------------~~~~~gwr~~f~~~~~  176 (412)
T TIGR02332       114 LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG-----------------LMALKGWQWLFLLEGF  176 (412)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCccchhHHHHHHHH
Confidence            35566789999999999999999999999999999999988762100                 0134689999999887


Q ss_pred             HHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccc-cccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372           82 PAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTD-INVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT  159 (402)
Q Consensus        82 ~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (402)
                      ++++ .++..+++||+|+.  .+.-.++ +.+...+..+.+ .+.+..+ ...++++....+.++ ..++   +.++...
T Consensus       177 ~~l~~~~~~~~~~~~~p~~--~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~---~~~~~~~  248 (412)
T TIGR02332       177 PSVILGVMTWFWLDDSPDK--AKWLDEE-DKKALKEMIDNDQLTLEQPE-GAFAHAAMPQRSMLR-EIFT---PAIMLYT  248 (412)
T ss_pred             HHHHHHHHHhhccCCCccc--CCCCCHH-HHHHHHHHHHhccccccccc-cccccccccHHHHHH-HhcC---hHHHHHH
Confidence            7765 44556678999853  1000111 111111111111 0000000 000000000011111 1111   2345555


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhc--CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH-HHH
Q 042372          160 STWFLLDIAFYTINLTQKDIYPAT--GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ-LGG  236 (402)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~-~~~  236 (402)
                      ...++....++.+..|.|.++++.  +.+..+.+.            ......++.++|.++.|+++||++||+.. ...
T Consensus       249 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~------------~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~  316 (412)
T TIGR02332       249 LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGL------------LAAIPQFCTIFGMIWWSRHSDRLKERKHHTALP  316 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHH------------HhhHHHHHHHHHHHHHHHHhcccCccHHHHHHH
Confidence            666666677888889999999874  455543333            67777888889999999999999977643 333


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372          237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS  316 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  316 (402)
                      .++..+.. .+...    .                ............ ...+.....+..+....|.+|++.|+++.|+.
T Consensus       317 ~~~~~~~~-~~~~~----~----------------~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~  374 (412)
T TIGR02332       317 YLFAAAGW-LLASA----T----------------DHNLIQLLGIIM-ASMGSFSAMAIFWTTPDQSISLQARAIAIAVI  374 (412)
T ss_pred             HHHHHHHH-HHHHh----c----------------CCHHHHHHHHHH-HHHHhhhhhhHHHhhcccccchHHHHHHHHHH
Confidence            33333322 21111    0                111111111111 11222222334445567889999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN  353 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (402)
                      +...++|++++|.+.+.+.+..+ +|...+.+.+++.
T Consensus       375 ~~~~~~g~~~~p~~~g~i~~~~g-~~~~~~~~~~~~~  410 (412)
T TIGR02332       375 NATGNIGSALSPFLIGILKDATG-SFNSGLWFVAALL  410 (412)
T ss_pred             HHhhhhhhhhhhhhcccccccCC-CCchhHHHHHHHH
Confidence            99999999999999999998764 5888777665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.89  E-value=3.1e-21  Score=180.99  Aligned_cols=265  Identities=18%  Similarity=0.160  Sum_probs=164.1

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++....++.|++|+++|+++.++...+..+|.++++.+...+.                       +..+||+.|++..+
T Consensus       124 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~-----------------------~~~~w~~~f~i~~~  180 (426)
T PRK12307        124 YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA-----------------------EAYGWRAAFFVGLL  180 (426)
T ss_pred             HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc-----------------------ccCCHHHHHHHHHH
Confidence            3556788999999999999999999999999999998887775                       56789999998766


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      +.++.+......||++++..  ++.+++              .+ +.....+..+...++.++++    ..+..+.....
T Consensus       181 ~~~~~~~~~~~~p~~~~~~~--~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  239 (426)
T PRK12307        181 PVLLVIYIRARAPESKEWEE--AKLSGK--------------GK-HSQSAWSVFSLSMKGLFNRA----QFPLTLCVFIV  239 (426)
T ss_pred             HHHHHHHHHHHCCCChHHHH--hhhhcc--------------cc-ccccchhhhhHHHHHHHhhc----hHHHHHHHHHH
Confidence            55554444445677765421  100000              00 00000000000111222211    11112222222


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  241 (402)
                      .+......+....+.|.++++.|++....+.            ......++.+++.++.|++.||+|||+.+..+.++..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~  307 (426)
T PRK12307        240 LFSIFGANWPIFGLLPTYLAGEGFDTGVVSN------------LMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSF  307 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            2333333444566788888888877664333            5566777888899999999999999998887776655


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK  321 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  321 (402)
                      +..+.+....                    ...........+...+...+..+....++.|.+|++.|+++.|+.+....
T Consensus       308 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  367 (426)
T PRK12307        308 LFIFPLFRIP--------------------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAA  367 (426)
T ss_pred             HHHHHHHHHc--------------------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHh
Confidence            4443332211                    11111111112222222223333445667899999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhcCCCchh
Q 042372          322 AGAIVGAFGVQYYTQKGDKQIKQ  344 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~~~~~~  344 (402)
                      +++.++|.+.+++.+..  ++..
T Consensus       368 ~~~~~gp~~~g~l~~~~--g~~~  388 (426)
T PRK12307        368 TSGTFNSMAATWLGITM--GLGA  388 (426)
T ss_pred             HHHHHHHHHHHHHHHcc--cHHH
Confidence            99999999999998876  5443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.89  E-value=4.2e-21  Score=180.16  Aligned_cols=259  Identities=15%  Similarity=0.158  Sum_probs=156.7

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++...++++|++|+++|++++++...+..+|..+++.++..+...+.+.               ....+|||++|+++.+
T Consensus       135 ~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~---------------~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        135 LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPA---------------QMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---------------HHhccchHHHHHHHHH
Confidence            4566789999999999999999999999999988888888775322110               0145789999998765


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      ..++.++.....||++++..  ++++                             .+..+.++.  .+++++..+.....
T Consensus       200 ~~~~~~~~~~~~~e~~~~~~--~~~~-----------------------------~~~~~~~~~--~~~~~~~~~~~~~~  246 (434)
T PRK15075        200 IVPFIFLIRRSLEETEEFLA--RKHR-----------------------------PSMREIFRS--LAANWRIVLAGMLM  246 (434)
T ss_pred             HHHHHHHHHHhcCCCHHHHH--hhhc-----------------------------cccccHHHH--HHHhHHHHHHHHHH
Confidence            54444444444566543210  0000                             000011111  11122223232333


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .+.....++....|.|.++++ .|++..+.+.            ...+..++.+++.++.|+++||+|||+.++.+..+.
T Consensus       247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~  314 (434)
T PRK15075        247 VAMTTVSFYLITVYTPTFGKTVLHLSAADSLL------------VTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLA  314 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            344455677788889999886 7887765433            556667778888889999999999999887765443


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .+..........  . .              ...........+...+ .....+..+.+..|.+|++.|+++.++.+..+
T Consensus       315 ~~~~~~~~~~~~--~-~--------------~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~  376 (434)
T PRK15075        315 ILTAYPALSWLV--A-A--------------PSFARMLAVELWLSFL-YGSYNGAMVVALTEVMPAEVRTAGFSLAYSLA  376 (434)
T ss_pred             HHHHHHHHHHHH--c-C--------------CchHHHHHHHHHHHHH-HHHHHhhHHHHHHHHCCCCccchheeHHHHHH
Confidence            322211111100  0 0              1111111111111111 11222334466799999999999999976666


Q ss_pred             HH-HHHHHHHhHHHHhhhc
Q 042372          321 KA-GAIVGAFGVQYYTQKG  338 (402)
Q Consensus       321 ~~-g~~i~~~~~~~~~~~~  338 (402)
                      .. ++.++|.+.+++.+..
T Consensus       377 ~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        377 TAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             HHHHhhhHHHHHHHHHHhc
Confidence            65 5788999999999887

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.89  E-value=2.7e-21  Score=180.72  Aligned_cols=282  Identities=9%  Similarity=-0.008  Sum_probs=183.4

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA   83 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~   83 (402)
                      ...+++.|+.|+++|+++.++......+|.++++.+++.+.                       +..+||+.|++.++..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~-----------------------~~~~~~~~~~~~~~~~  186 (417)
T PRK10489        130 ALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI-----------------------AAGGVAWNYGLAAAGT  186 (417)
T ss_pred             HHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH-----------------------HHHhhHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999887                       4567999999888777


Q ss_pred             HHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           84 ALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        84 ~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      ++..+..+.+||+++.    ++++++..+..                         .+.++. .++++  .+.......+
T Consensus       187 ~~~~~~~~~l~~~~~~----~~~~~~~~~~~-------------------------~~~~~~-~~~~~--~~~~~~~~~~  234 (417)
T PRK10489        187 FITLLPLLRLPALPPP----PQPREHPLRSL-------------------------LAGFRF-LLASP--VVGGIALLGG  234 (417)
T ss_pred             HHHHHHHHhCCCCCCC----CcccccchHHH-------------------------HHHHHH-HHcCh--HHHHHHHHHH
Confidence            7766666778876532    11000000000                         000011 11111  1111111111


Q ss_pred             HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372          164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI  242 (402)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  242 (402)
                      +.. .......+.|.+.++ .|.++...+.            ......++.+++.++.+++.||.++++.+..+..+.++
T Consensus       235 ~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~------------~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~  301 (417)
T PRK10489        235 LLT-MASAVRVLYPALADEVWQMGAAQIGL------------LYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFL  301 (417)
T ss_pred             HHH-HHHhHHHhhHHHHHhccCCChhHhHH------------HHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHH
Confidence            111 123455567888887 7887765443            66667788888899999999998877777777666555


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA  322 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  322 (402)
                      +.+++...                     .+. ....+..+..+.+.....+...+++.|..|++.|+++.|+.+....+
T Consensus       302 ~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  359 (417)
T PRK10489        302 AVGLFGLM---------------------PMW-ILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVT  359 (417)
T ss_pred             HHHHHHcc---------------------chH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh
Confidence            55443321                     111 12222222222222222334556778999999999999999999999


Q ss_pred             HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHH-HHHhhcccCCCCCcccccch
Q 042372          323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGF-LCSFMVPETNGLSLEELSGE  377 (402)
Q Consensus       323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~et~~~~~~~~~~~  377 (402)
                      |..+++.+.+.+.+..  ++...+.+.+++.++.. +....++++++++.+|++++
T Consensus       360 g~~~g~~l~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        360 GDAIGAALLGGLGAMM--TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             hHhHHHHHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            9999999999999987  67777776666655544 44445698888877776554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=8.3e-22  Score=186.61  Aligned_cols=294  Identities=14%  Similarity=0.098  Sum_probs=182.9

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      +|....+++|++|+++||+++++++.+.++|.++++.+...+....                    ...+||..|.+.++
T Consensus       140 ~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~--------------------~~~~~~~~f~~~g~  199 (467)
T PRK09556        140 GPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF--------------------FDGHVIGMFIFPSI  199 (467)
T ss_pred             chHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh--------------------ccCcchhHHHHHHH
Confidence            4667789999999999999999999999999999998887665210                    11259999988776


Q ss_pred             HHHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 PAALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      ++++. ++..++++++|+..  +..+.++   ..    +....++.+   ..++++.+..+.+.+..+++  +.++...+
T Consensus       200 ~~~~~~i~~~~~~~~~p~~~--~~~~~~~---~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~--~~~~~~~~  265 (467)
T PRK09556        200 IALIIGFIGLRYGSDSPEEL--GWGKAEE---IF----GEPISEEDK---ETESTDMTKWQIFVEYVLKN--PVIWLLCF  265 (467)
T ss_pred             HHHHHHHHHHHhCCCChhhc--CCCChhh---cc----cCccchhhh---ccccccCcHHHHHHHHHHcC--hHHHHHHH
Confidence            66554 44455567776431  1111111   00    000000000   00000111111122212222  24555666


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      ..++....+++...|.|.|+++ +|++..+.+.            ......++.+++.++.|+++||+|||+.++....+
T Consensus       266 ~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~------------~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~  333 (467)
T PRK09556        266 ANIFLYIVRIGIDNWSPVYAFQELGFSKEDAIN------------TFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL  333 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            6666666677788899988865 7888776444            56666778889999999999999998876655433


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ..++...+....    .               .+... ..+..+..+....+..........|.+|++.|+++.|+.+..
T Consensus       334 ~~~~~~~~~~~~----~---------------~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~  393 (467)
T PRK09556        334 ALIIFTLGVYQH----A---------------TSEYM-YLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTF  393 (467)
T ss_pred             HHHHHHHHHHHh----c---------------CcHHH-HHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence            333222222211    0               11112 212222222222232222234567999999999999999999


Q ss_pred             HHH-HHHHHHHhHHHHhh------------hcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          320 GKA-GAIVGAFGVQYYTQ------------KGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       320 ~~~-g~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +++ |.+++|.+.|.+.+            ..  +|+..|.++.++.+++.+..+++
T Consensus       394 g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        394 AYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT--GWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHhHHHHhhhHHHHhccccccccccccccc--ChHHHHHHHHHHHHHHHHHHHHH
Confidence            997 77899999999998            33  79999999888888887776655

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.88  E-value=6.3e-21  Score=179.85  Aligned_cols=289  Identities=15%  Similarity=0.120  Sum_probs=171.5

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGIL-FAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      |.....+.|++|+++|++++++++.+..+|.. .+++++..+.                       ...+||+.|++.++
T Consensus       139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~-----------------------~~~gw~~~f~i~~~  195 (452)
T PRK11273        139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA-----------------------WFNDWHAALYMPAF  195 (452)
T ss_pred             hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----------------------HhccHHHHHHHHHH
Confidence            45567889999999999999999999998864 4555443332                       22479999999777


Q ss_pred             HHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 PAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      +.++ .++..+++||+|+...  .+++++..+        +..++.+   +.++++.+..+.+.+...++  +.++...+
T Consensus       196 ~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~l  260 (452)
T PRK11273        196 AAILVALFAFAMMRDTPQSCG--LPPIEEYKN--------DYPDDYN---EKHEQELTAKQIFMQYVLPN--KLLWYIAI  260 (452)
T ss_pred             HHHHHHHHHHHHccCCHhhcC--CCChhhhhh--------ccccccc---cccCCCccHHHHHHHHHHcC--hHHHHHHH
Confidence            6555 4556667899876411  111111100        0000000   00001111122222222222  23444555


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chhHHHHH-H
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRFIIQLG-G  236 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~-~  236 (402)
                      ..++.....+....|.|.++++ .|++..+.+.            ......++.+++.++.|+++||+  +||....+ .
T Consensus       261 ~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~------------~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~  328 (452)
T PRK11273        261 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW------------AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  328 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence            5555555667778899999987 6787665433            55566777788888999999999  55543222 2


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372          237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS  316 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  316 (402)
                      ..+..++.+.+....     .              .+...... .....+....+.......+..|.+|++.|+++.|+.
T Consensus       329 ~~l~~~~~~~~~~~~-----~--------------~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  388 (452)
T PRK11273        329 MTLVTIATIVYWLNP-----A--------------GNPTVDMA-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT  388 (452)
T ss_pred             HHHHHHHHHHHHHhc-----c--------------cChHHHHH-HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHH
Confidence            122222222111110     0              11111111 111112212222222334567999999999999999


Q ss_pred             HHHHHHHHHH-HHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          317 AAAGKAGAIV-GAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       317 ~~~~~~g~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +....+|+.+ +|.+.+.+.+..  +|+..|++.+++++++++...++
T Consensus       389 ~~~~~~g~~~~g~~v~g~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        389 GLFGYLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHH
Confidence            9999888765 799999999988  89999998888888887776655

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.88  E-value=7.3e-21  Score=176.49  Aligned_cols=293  Identities=14%  Similarity=0.134  Sum_probs=180.0

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      .+....++.|++|+++|++.+++.+....+|.++++.+++.+.                       ...+||+.|++.++
T Consensus       100 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~~~~~~~~~~~  156 (399)
T TIGR00893       100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL-----------------------IHFSWQWAFIIEGV  156 (399)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH-----------------------HhCCchHHHHHHHH
Confidence            3566789999999999999999999999999999999999876                       56789999998877


Q ss_pred             HHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 PAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      ..++..+ ..+++||+|+.  .+...+++. +...+...    .+.++.++.+.++...++.+++       +.++....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  222 (399)
T TIGR00893       157 LGIIWGVLWLKFIPDPPQK--AKWLTEEEK-YIVVGGLL----AEQQGKGPSTPKKYQIKELLKD-------RRVWGLAL  222 (399)
T ss_pred             HHHHHHHHhhheecCCCCc--cccCCHHHH-hhcchhhc----cccccccccCCCccchHHHhcC-------HHHHHHHH
Confidence            7666444 44456776542  111111111 11000000    0000000101111111111111       23444445


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHH-HHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLG-GFL  238 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~-~~~  238 (402)
                      ..+...........+.|.++++ .|.+..+.+.            ......++.+++.++.++++||++||+..+. ...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  290 (399)
T TIGR00893       223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGF------------MASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK  290 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhH------------HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHH
Confidence            5555555666777788888765 6777665443            6666777888899999999999999962111 111


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      ...++.+............              ... ....... .......+..+..+++..|.+|++.|+++.|+.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  354 (399)
T TIGR00893       291 TAIIAGLVLSLLMFATNYV--------------NIP-YAALALV-ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINS  354 (399)
T ss_pred             HHHHHHHHHHHHHHHhccc--------------hhH-HHHHHHH-HHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHH
Confidence            1111111111110000000              111 1222222 22222333567788889999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCC-chhhhHHHHHHHHHHHHHHh
Q 042372          319 AGKAGAIVGAFGVQYYTQKGDKQ-IKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  361 (402)
                      +..+|..++|.+.+.+.+..  + +...+.+.+++.+++.+..+
T Consensus       355 ~~~~g~~~~~~i~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       355 LGNLGGIVGPIVIGAIAATT--GSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHhhhhhhHHhhhhccCC--CchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877  5 88888888877777666554

>TIGR00895 2A0115 benzoate transport

Probab=99.88  E-value=1e-20  Score=175.74  Aligned_cols=274  Identities=21%  Similarity=0.271  Sum_probs=169.5

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++...+++.|++|+++|+++.++...+..+|.++++.+++.+.                       +..+||+.|++.++
T Consensus       123 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~g~~~~~~~~~~  179 (398)
T TIGR00895       123 MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI-----------------------PVFGWRSLFYVGGI  179 (398)
T ss_pred             hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh-----------------------hcccceeehhhhhh
Confidence            3567789999999999999999999999999999999998886                       66789999998764


Q ss_pred             HHH-HHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 PAA-LTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~~~-~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      ..+ ..++...++||+|++...  +++++..+...+....+.+++.++.++.++++....+..+....++..+..+....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (398)
T TIGR00895       180 APLLLLLLLMRFLPESIDFLVS--KRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWL  257 (398)
T ss_pred             HHHHHHHHHHHhCCCCChHHHh--cCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHH
Confidence            444 455556678999876432  23333333222222211111111111111111111111111111111223333444


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      ..+.....++....+.|.+.++.|++....+.            ......++.+++.++.++++||+|||+..... .+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~  324 (398)
T TIGR00895       258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAAT------------GGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLG  324 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHH
Confidence            44455556667777888777778888765443            66677788889999999999999999544433 333


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .+...++....                    .+..... ...+..+.+.....+...++..|.+|++.|+++.|+.+...
T Consensus       325 ~~~~~~~~~~~--------------------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  383 (398)
T TIGR00895       325 AVFAVLVGSTL--------------------FSPTLLL-LLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIG  383 (398)
T ss_pred             HHHHHHHHHHh--------------------hCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence            33322222211                    1111222 22222222233344566788899999999999999999999


Q ss_pred             HHHHHHHHHhHHHH
Q 042372          321 KAGAIVGAFGVQYY  334 (402)
Q Consensus       321 ~~g~~i~~~~~~~~  334 (402)
                      .+|.+++|.+.+++
T Consensus       384 ~~g~~~g~~~~G~l  397 (398)
T TIGR00895       384 RLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHhHHhc
Confidence            99999999988865

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.87  E-value=1.3e-20  Score=175.54  Aligned_cols=282  Identities=14%  Similarity=0.103  Sum_probs=172.3

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++...+++.|++|+++|+++.++.+.+..+|.++++.+++.+...                     ...+||+.|++.++
T Consensus       118 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~---------------------~~~~w~~~f~~~~~  176 (405)
T TIGR00891       118 YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV---------------------WGDGWRALFFISIL  176 (405)
T ss_pred             hHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCccHHHHHHHHHH
Confidence            355678899999999999999999999999999999999888621                     12359999999887


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      +.++.++....+||+|++... ++++++..+...+..+.+..     .   +...+......+. ..++++..+......
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  246 (405)
T TIGR00891       177 PIIFALWLRKNIPEAEDWKEK-HAGKALVRTMVDILYGGEHR-----I---ANIVMTLAAAMVQ-SAGKRWPTFVYLVVL  246 (405)
T ss_pred             HHHHHHHHHHhCCCChhHHHH-hhhhhhhhhHHHHHhccchh-----h---hhhhhhhhHHhhh-hhhhhhHHHHHHHHH
Confidence            777777777778998776322 11111111111111110000     0   0000000000111 111222222222333


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .............+.|.++.+ .|++..+.+.            ......++.+++.++.+++.||+|||+.+..+....
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~  314 (405)
T TIGR00891       247 VLFANLYSHPIQDLLPTYLKADLGLSPHTVAN------------IVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG  314 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence            333333344555566777654 7888775444            666777888899999999999999999888776544


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .+........    .                .+. ....+.....++...+..+....++.|.+|++.|+++.|+.+...
T Consensus       315 ~~~~~~~~~~----~----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  373 (405)
T TIGR00891       315 QLLIIPVFAI----G----------------ANV-AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLG  373 (405)
T ss_pred             HHHHHHHHHh----C----------------Cch-HHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHH
Confidence            3222221111    0                111 122222122222233444556677899999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHH
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIA  348 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~  348 (402)
                      .++..++|.+.+.+.+..+ .|...+..
T Consensus       374 ~~g~~~g~~~~g~l~~~~g-~~~~~~~~  400 (405)
T TIGR00891       374 NLGGALAPIIGALLAQRLD-EYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccchhHHh
Confidence            9999999999999999873 26554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.87  E-value=1.7e-20  Score=179.59  Aligned_cols=291  Identities=13%  Similarity=0.138  Sum_probs=170.1

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +....++.|++|+++|+++.++...+..+|.++++.+++.+.                       +..+||+.|++.+++
T Consensus       127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~w~~~f~~~~~~  183 (496)
T PRK03893        127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV-----------------------PVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------ccCCHHHHHHHHHHH
Confidence            445678999999999999999999999999999999999886                       677999999987766


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhh-----------------
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSK-----------------  145 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  145 (402)
                      .++.++....+||++++...+ +++++..+........+ ......... ..........+..                 
T Consensus       184 ~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (496)
T PRK03893        184 IIFALWLRKNLPEAEDWKEKH-AGKAPVRTMVDILYRGE-HRIINILLT-LAAAAALWFCFAGNLQNAAIVAVLGLLCAA  260 (496)
T ss_pred             HHHHHHHHHhCCCchhhhhhc-cccccchhHHHHHhcch-hHHHHHHHH-HHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence            666666666788887652211 11110000000000000 000000000 0000000000000                 


Q ss_pred             -------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 042372          146 -------EFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGY  217 (402)
Q Consensus       146 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~  217 (402)
                             +...+.+..........+......+....+.|.+++ +.|++..+.+.            ......++.+++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~------------~~~~~~~~~~~g~  328 (496)
T PRK03893        261 IFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVAN------------VLFFSGFGAAVGC  328 (496)
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHH------------HHHHHHHHHHHHH
Confidence                   000000001111111111111111234567788885 68888776554            6677788888999


Q ss_pred             hhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccce
Q 042372          218 WFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTF  297 (402)
Q Consensus       218 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (402)
                      ++.|+++||+|||+.++.+..+..+..+.+....                    ...............+...+..+...
T Consensus       329 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (496)
T PRK03893        329 CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG--------------------GANVWVLGLLLFFQQMLGQGISGLLP  388 (496)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--------------------ccHHHHHHHHHHHHHHHhcccchhhH
Confidence            9999999999999988877655444433222210                    11112222222222222333344555


Q ss_pred             eeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372          298 IVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN  353 (402)
Q Consensus       298 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (402)
                      .++.|.+|++.|++++++.+....+|+.++|.+.+.+.+..  +++..+...++..
T Consensus       389 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~--g~~~~~~~~~~~~  442 (496)
T PRK03893        389 KLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL--DLGTALASLSFSL  442 (496)
T ss_pred             HHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC--ChHHHHHHHHHHH
Confidence            67789999999999999999999999999999999999877  7777665554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.87  E-value=3.2e-20  Score=176.01  Aligned_cols=290  Identities=11%  Similarity=0.088  Sum_probs=179.1

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCC-cchhHHHHHhh
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGD-YLWRIVLMFGA   80 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Wr~~f~~~~   80 (402)
                      +|....++.|++|+++|++++++...+..+|.++++.+++.+.                       .. .+||+.|++.+
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~-----------------------~~~~gw~~~f~i~~  205 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC-----------------------ESWGGWPMIFYVFG  205 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccCCCCeehhhhh
Confidence            4677889999999999999999999999999999999999886                       45 48999999988


Q ss_pred             HHHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372           81 VPAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT  159 (402)
Q Consensus        81 i~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (402)
                      +++++..+ ...+.+|+|+.  . ++..+++.+...+.    .+++.    +..+.+..    ++. ..++  +.++...
T Consensus       206 ~~~~~~~~~~~~~~~~~p~~--~-~~~~~~~~~~i~~~----~~~~~----~~~~~~~~----~~~-~~~~--~~~~~~~  267 (465)
T TIGR00894       206 IVGCAWSLLWFVFPADDPSI--H-PCISKFEKKYINSS----LQGQK----GSTRQSLP----IKA-IPKS--LPVWAIW  267 (465)
T ss_pred             HHHHHHHHHHHHHhcCCccc--C-CCCCHHHHHHHHhh----ccccc----CCCCCCCC----HHH-HhcC--HHHHHHH
Confidence            88776544 44456777753  1 11112211211110    00000    00000111    122 2221  2455666


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH------
Q 042372          160 STWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII------  232 (402)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~------  232 (402)
                      ...++....++....|+|.++++ +|++..+.+.            ...+..++.+++.+++|+++||+++|+.      
T Consensus       268 ~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~  335 (465)
T TIGR00894       268 FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGL------------LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAA  335 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            66777777788888899999876 7887775544            6667778888899999999999865421      


Q ss_pred             --HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372          233 --QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS  310 (402)
Q Consensus       233 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  310 (402)
                        +..+..........+.....  .                ......+..+.+. +.+..+..+..+....|..|. .+|
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~g  395 (465)
T TIGR00894       336 RKIFNGIGGLGPGIFAYALPYL--S----------------AAFYLTIIILTLA-NAVSSGPLAGVLINSLDLAPR-FLG  395 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc--C----------------CchHHHHHHHHHH-HHHhhhhhhhhhhchhhcChh-HHH
Confidence              11111111111111111110  0                1111222222222 222222233344455677665 899


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhhcC-CCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          311 TCHGISAAAGKAGAIVGAFGVQYYTQKGD-KQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                      .+.++.+..+.++++++|.+.+.+.+... .+|...|.+.+++.+++.++..+++
T Consensus       396 ~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       396 FIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            99999999999999999999998776431 1477888888888888777666553

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.87  E-value=5.9e-20  Score=163.31  Aligned_cols=265  Identities=15%  Similarity=0.125  Sum_probs=182.8

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      |+.+.++..+..||++|++++++...+..++.++|.+++.++.                       +.+|||..|++.++
T Consensus       119 ~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig-----------------------~~~GWR~~F~~ia~  175 (394)
T COG2814         119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG-----------------------QLFGWRATFLAIAV  175 (394)
T ss_pred             HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH-----------------------HHhhHHHHHHHHHH
Confidence            3567788999999999999999999999999999999999997                       78899999999888


Q ss_pred             HHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 PAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      .+++.++ .+..+|  |+.  ..+....+.                          .+..+.++++       ..+....
T Consensus       176 l~ll~~~~~~~~lP--~~~--~~~~~~~~~--------------------------~~~~~~l~~p-------~v~~~l~  218 (394)
T COG2814         176 LALLALLLLWKLLP--PSE--ISGSLPGPL--------------------------RTLLRLLRRP-------GVLLGLL  218 (394)
T ss_pred             HHHHHHHHHHHhCC--Ccc--CCCCCCcch--------------------------hHHHHHhcCc-------hHHHHHH
Confidence            8887554 455688  221  101110100                          0011111222       3333444


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      ..++...+.|....|...++++ .|++....+.            ....++++.++|+.++|++.|| +.|+.+.....+
T Consensus       219 ~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~------------~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l  285 (394)
T COG2814         219 ATFLFMTGHFALYTYIRPFLESVAGFSVSAVSL------------VLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLL  285 (394)
T ss_pred             HHHHHHcchhhhHHhHHHHHHHccCCCHhHHHH------------HHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHH
Confidence            4444445556666666555554 7888876555            7888899999999999999999 888888877777


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ..+....+.+..                     ++...........++.............++ .-++.++.+.+++...
T Consensus       286 ~a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa  343 (394)
T COG2814         286 LALALLALTFTG---------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAA  343 (394)
T ss_pred             HHHHHHHHHHhc---------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHH
Confidence            776666655532                     112222222222222222222233333444 3357789999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .++|..+|..+.+.+.++.  ++....++.++..+++.++.+..
T Consensus       344 ~nlgia~GA~lGG~v~~~~--g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         344 FNLGIALGAALGGLVLDAL--GYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997  89999999888888888777654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.87  E-value=7.5e-20  Score=169.47  Aligned_cols=262  Identities=12%  Similarity=0.081  Sum_probs=169.0

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |...+++.|++|+++|++++++...+..+|.++++.+++.+.                       +..|||+.|++.++.
T Consensus       116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~-----------------------~~~gw~~~f~~~~~~  172 (390)
T PRK03545        116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG-----------------------QYLGWRTTFLAIGGG  172 (390)
T ss_pred             HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH-----------------------HHhcHHHHHHHHHHH
Confidence            456688999999999999999999999999999999999886                       567899999998877


Q ss_pred             HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      +++..+ ...++||.|+.    +++..+                            ...+.++++       .++.....
T Consensus       173 ~~l~~~~~~~~~~~~~~~----~~~~~~----------------------------~~~~~~~~~-------~~~~~~~~  213 (390)
T PRK03545        173 ALITLLLLIKLLPLLPSE----HSGSLK----------------------------SLPLLFRRP-------ALVSLYLL  213 (390)
T ss_pred             HHHHHHHHHHhCCCCCCC----CcchHH----------------------------HHHHHHhCc-------HHHHHHHH
Confidence            666443 34456765421    110000                            000111111       12222222


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .++.....+....+.+.++++ .|.+....+.            ......++.+++.++.++++||++||.... +..+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~------------~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~  280 (390)
T PRK03545        214 TVVVVTAHFTAYSYIEPFVQQVAGLSENFATL------------LLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALL  280 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHH------------HHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHH
Confidence            222233334444555556555 6777665443            566667788889999999999999886544 33333


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .++...+....                    .+.+... ...+..+.+.....+.......+..| +.|+++.|+.+...
T Consensus       281 ~~~~~~l~~~~--------------------~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~  338 (390)
T PRK03545        281 LVCLLLLLPAA--------------------NSEWHLS-VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIF  338 (390)
T ss_pred             HHHHHHHHHHh--------------------chHHHHH-HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence            33332222110                    1122222 22222222233333344455667766 57899999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .+|..+||.+.+.+.+..  +++..+.+.+++.+++.++.+..
T Consensus       339 ~~g~~~G~~~~G~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        339 NIGIGAGALLGNQVSLHL--GLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988  89999999888888887776654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.86  E-value=3e-20  Score=172.31  Aligned_cols=275  Identities=18%  Similarity=0.166  Sum_probs=172.7

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++...+++.|++|+++|++..++.+.+..+|.++++.++..+.....+.               ....++||+.|++.++
T Consensus       114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~---------------~~~~~~w~~~~~~~~~  178 (394)
T TIGR00883       114 WGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD---------------ALLEWGWRIPFLVSAV  178 (394)
T ss_pred             ccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------------HhhccchHHHHHHHHH
Confidence            4667889999999999999999999999999999999887765322110               1145789999999887


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      ..++..+....+||+|++...  ++++                        ++.+...++     ..+++++.++.....
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~--~~~~------------------------~~~~~~~~~-----~~~~~~~~~~~~~~~  227 (394)
T TIGR00883       179 LVLIGLYLRRNLEETPVFEKA--QEKH------------------------KKKRGPIRE-----TLTKHRKPFLLGLGL  227 (394)
T ss_pred             HHHHHHHHHHhcCCChhHHHH--Hhcc------------------------ccccCCHHH-----HHHhchHHHHHHHHH
Confidence            777766666677887654211  0000                        000111111     112222234444445


Q ss_pred             HHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .+.....++....+.|.+.+ +.|.+..+.+.            ......++.+++.++.|+++||+|||+.+.....+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  295 (394)
T TIGR00883       228 VIATTTTFYLITTYLPTYLTQTLGLSANSALL------------VLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            55555566677778888884 47777665433            556667777888889999999999999877554443


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH-HH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA-AA  319 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~  319 (402)
                      .+..........  . .              ... ..........+++.....+...++..|.+|++.|+++.++.+ ..
T Consensus       296 ~~~~~~~~~~~~--~-~--------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  357 (394)
T TIGR00883       296 ALLAVPLLMALL--D-S--------------GSF-TLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLA  357 (394)
T ss_pred             HHHHHHHHHHHh--c-C--------------Cch-HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhH
Confidence            333221111110  0 0              111 222222222222233334556778899999999999999854 44


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN  353 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (402)
                      ..+|..++|.+.+.+.+..+ .|+..++...+..
T Consensus       358 ~~~g~~~~p~~~g~l~~~~g-~~~~~~~~~~~~~  390 (394)
T TIGR00883       358 GAIFGGFAPYIAAALVAMTG-DWYAIGYYLAALA  390 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHcC-cchhHHHHHHHHH
Confidence            56788899999999998873 2666555544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.86  E-value=7.7e-20  Score=175.71  Aligned_cols=304  Identities=21%  Similarity=0.261  Sum_probs=199.4

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      .++..+++|+.++++|+.++.+ ......|..+++..++++.                       .  +||+.+++..++
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-----------------------~--~Wr~~~~~~~~~  243 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-----------------------R--DWRWLFWIISIP  243 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-----------------------h--hHHHHHHHHHHH
Confidence            4567889999999999999999 6666666666777776665                       2  699999999999


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccc---ccc--ccC---CCCC----CCCCCcccccchhhHHhhh
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTD---INV--ATS---AYPA----PVSPEASTYGLFSKEFVQK  150 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~---~~~--~~~---~~~~----~~~~~~~~~~~~~~~~~~~  150 (402)
                      +++.++.+++.||||||+.. +++.+++.+.+++..+.|   ...  ..+   ..++    ..+++....++++.+..++
T Consensus       244 ~~~~~~~~~l~~Es~rwl~~-~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  322 (521)
T KOG0255|consen  244 SGLFLLLWFLPPESPRWLLS-KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRY  322 (521)
T ss_pred             HHHHHHHHHccCcChHHHHH-cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHH
Confidence            99877777777899999865 566677777777654332   100  000   0000    0112234455555554433


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh
Q 042372          151 HGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF  230 (402)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr  230 (402)
                         ..+...+.++.....+|+.......    +|.+...               ..........++....+...|++|||
T Consensus       323 ---~~~~~~~~~~~~~~~y~gl~~~~~~----lg~~~~~---------------~~~~~~~~~~p~~~~~~~~~~~~gR~  380 (521)
T KOG0255|consen  323 ---RTLYLLFIWFVFSLVYYGLSLNVSG----LGGNIYL---------------NFTLSGLVELPAYFRNGLLLPEFGRR  380 (521)
T ss_pred             ---HHHHHHHHHHHHhHHHHhhhhhhhh----cCchHHH---------------HHHHHHHHHhhHHHHHHHHHHHhCcH
Confidence               4566666666666677766554433    3333221               23333336666777778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372          231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS  310 (402)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  310 (402)
                      .....+..+..++++..++....                  ........+..+..++...+.. ..+.+.+|++|+..|.
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~  441 (521)
T KOG0255|consen  381 PPLFLSLFLAGIGLLLFGWLPDD------------------LGGWLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRN  441 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc------------------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHH
Confidence            99999998888888877775331                  1101223333333333334444 4478899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH-hhcccCCCCCcccccch
Q 042372          311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS-FMVPETNGLSLEELSGE  377 (402)
Q Consensus       311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~et~~~~~~~~~~~  377 (402)
                      .+.+......+++++++|.+.......   .....+.+++....+..++. .++|||+++.+.+..++
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~  506 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQM---FPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD  506 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh---cccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence            999999999999999999888666553   22233333455555555555 67799999988654443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.85  E-value=8.7e-20  Score=171.47  Aligned_cols=297  Identities=14%  Similarity=0.144  Sum_probs=175.2

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +....++.|++|+++|++++++.+.+..+|..+++.+.+....                      ...+||..|++.+++
T Consensus       137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~----------------------~~~~w~~~f~~~~~~  194 (438)
T TIGR00712       137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA----------------------WFNDWHAALYFPAIC  194 (438)
T ss_pred             HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH----------------------HhhhhHHHHHHHHHH
Confidence            4556788999999999999999999999999998877665431                      345899999998777


Q ss_pred             HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++ .++..+++||+|+..   +.++.+..       +.+..++..+  + .+++.+..+.+.+...++  +.++.....
T Consensus       195 ~~i~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~  259 (438)
T TIGR00712       195 AIIVALFAFAMMRDTPQSC---GLPPIEEY-------RNDYPDDYNE--K-AEQELTAKEIFMQYVLPN--KLLWYIAIA  259 (438)
T ss_pred             HHHHHHHHHHhccCCHHhc---CCCCchhc-------cccccccccc--c-cccccchHHHHHHHHccC--chHHHHHHH
Confidence            665 445566788887541   11111100       0000000000  0 000111112222222222  234444444


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .++.....++...|.|.++++ .|+++...+.            ...+..++.+++.+++|+++||+++++....+....
T Consensus       260 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~  327 (438)
T TIGR00712       260 NVFVYLLRYGVLDWSPTYLKEVKHFALDKSSW------------AYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFM  327 (438)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHccCCChhhHHH------------HHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHH
Confidence            444455567777889999887 6877765443            566677778888899999999996443222232222


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .+..+......  ....              .+.+.... ..+..+....+..........|.+|++.|+++.|+.+...
T Consensus       328 ~~~~~~~~~~~--~~~~--------------~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  390 (438)
T TIGR00712       328 TLVTIAVIVYW--MNPA--------------GNPLVDMI-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG  390 (438)
T ss_pred             HHHHHHHHHHH--hcCC--------------CchHHHHH-HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHH
Confidence            21111111110  0000              11111111 1111122222222222234679999999999999999998


Q ss_pred             HHHH-HHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372          321 KAGA-IVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETN  367 (402)
Q Consensus       321 ~~g~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~  367 (402)
                      ++++ +++|.+.+.+.+..  +|...+.+.++..+++.+..+++ ||.|
T Consensus       391 ~~gg~~~gp~l~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       391 YLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HhhhhhhcchhHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8875 68999999999987  78888888888777777776655 6654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.85  E-value=2.3e-19  Score=170.22  Aligned_cols=276  Identities=12%  Similarity=0.052  Sum_probs=174.6

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCC-CcchhHHHHHhhHH
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQG-DYLWRIVLMFGAVP   82 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Wr~~f~~~~i~   82 (402)
                      ...+++.|++|+++|+++.++...+..+|.++++.++..+.                       + ..|||..|++.++.
T Consensus       127 ~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~-----------------------~~~~GWr~~f~i~a~l  183 (491)
T PRK11010        127 VFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA-----------------------DRYLGWQGMYWLMAAL  183 (491)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hcccCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998886                       4 46899999998887


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      .++..+..+++||+++.  . ++++... +                         ...+.+++ .++++.  .+......
T Consensus       184 ~ll~~l~~~~~~e~~~~--~-~~~~~~~-~-------------------------~~~~~l~~-~~~~~~--~~~~ll~~  231 (491)
T PRK11010        184 LIPCIIATLLAPEPTDT--I-PVPKTLE-Q-------------------------AVVAPLRD-FFGRNN--AWLILLLI  231 (491)
T ss_pred             HHHHHHHHHhcCCCccc--c-ccccchh-h-------------------------hHHHHHHH-HHcCcC--HHHHHHHH
Confidence            77766666678887542  1 1000000 0                         00000111 111111  11111111


Q ss_pred             HHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHH-HHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMF-LVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      +......+....+.+.++ ++.|++..+.+.            .. ....++.++|.+++|+++||+|+|+.+.++.++.
T Consensus       232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~------------~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~  299 (491)
T PRK11010        232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGL------------VNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ  299 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            222222333334445554 458888876443            43 4556788889999999999999988877665544


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      ++....+.....  ..               .+.........+.....+.+. +..+++..+..|++.+++..++.+...
T Consensus       300 ~l~~l~~~~l~~--~~---------------~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~  361 (491)
T PRK11010        300 GVSNAGYWLLSI--TD---------------KNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALS  361 (491)
T ss_pred             HHHHHHHHHHHh--cc---------------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            444333222111  00               111111111111111111111 234566678889889999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPET  366 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et  366 (402)
                      .+|..+++.+.|.+.+..  ||+..|.+.+++.+++.+..++++++
T Consensus       362 ~lg~~~~~~~~G~l~~~~--G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        362 AVGRVYVGPVAGWFVEAH--GWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998888999999987  89999999999988888877776554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4.3e-20  Score=171.06  Aligned_cols=289  Identities=13%  Similarity=0.155  Sum_probs=195.5

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      +|+...+.+.|+|++||++..++..++..+|.+++.++++.+..                      ...||+.+|++.++
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~----------------------s~~GW~sifY~~g~  203 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE----------------------SSLGWPSIFYVFGI  203 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc----------------------cCCCCchHHHHHHH
Confidence            67888999999999999999999999999999999999999971                      34899999999888


Q ss_pred             HHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 PAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      .+++..+ +.++..|+|..   ++.-.+++++.+.+...        +.+..+..+.+.+++++.       +.++.+.+
T Consensus       204 ~g~i~~~~w~~~~~d~P~~---h~~is~~El~~I~~~k~--------~~~~~~~~~vP~~~i~ts-------~~vwai~~  265 (466)
T KOG2532|consen  204 VGLIWFILWFLFYSDSPSK---HPNISEKELKYIEKGKS--------EAHVKKKPPVPYKAILTS-------PPVWAIWI  265 (466)
T ss_pred             HHHHHHHHHHHHhcCCccc---CCCCCHHHHHHHHhccc--------ccccCCCCCCCHHHHHcC-------HHHHHHHH
Confidence            8887554 45557788864   12222333333322110        000000012233333333       37888999


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch---------h
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR---------F  230 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr---------r  230 (402)
                      ..++...+++.+..|+|.|+++ ++++..+.+.            ..++..+...+..+++|.++||+.+         |
T Consensus       266 ~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~------------~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk  333 (466)
T KOG2532|consen  266 SAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGF------------LSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK  333 (466)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence            9999999999999999999998 8898887666            8888888899999999999998854         3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372          231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS  310 (402)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  310 (402)
                      ..-.++..+.+++++.+++...                   ...+..++++.+...+.+. ..+..+.-..+. .+++-+
T Consensus       334 ifn~i~~~~~ai~l~~l~~~~~-------------------~~~~~a~~~l~~~~~~~g~-~~~Gf~~~~~~~-apq~a~  392 (466)
T KOG2532|consen  334 IFNTIAFGGPAVFLLVLAFTSD-------------------EHRLLAVILLTIAIGLSGF-NISGFYKNHQDI-APQHAG  392 (466)
T ss_pred             HHHhHHHHHHHHHHHeeeecCC-------------------CcchHHHHHHHHHHHHccc-chhhhHhhhhhc-cchHHH
Confidence            3334444444444444444311                   1111222222222222111 111122122233 456779


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhh-hcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          311 TCHGISAAAGKAGAIVGAFGVQYYTQ-KGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       311 ~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      ..+|+.+.+..+.++++|.+.+.+.. .....|+.+|++.+++.+++.++..++
T Consensus       393 ~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  393 FVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            99999999999999999999998884 211289999999999999888766655

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.84  E-value=2.7e-19  Score=165.82  Aligned_cols=266  Identities=11%  Similarity=0.079  Sum_probs=162.0

Q ss_pred             CchhHHhhhhccccch--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            3 PLSAVIMSEYANKRTR--GAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~r--g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      |....++.|+.+++.|  +...++.+.+.++|.++++.+++.+.                       +..|||..|++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~-----------------------~~~gw~~~f~~~~  180 (393)
T PRK15011        124 PQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA-----------------------MGFSFTVMYLSAA  180 (393)
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------------HhcChHHHHHHHH
Confidence            3455667777766655  45567888899999999999999987                       5678999999988


Q ss_pred             HHHHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372           81 VPAALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT  159 (402)
Q Consensus        81 i~~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (402)
                      +..++. ++..+++||.|+.    ++..++                  +.+.    .       ++  .++   ..+...
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~~----~-------~~--~~~---~~~~~~  222 (393)
T PRK15011        181 VAFIVCGVMVWLFLPSMRKE----LPLATG------------------TLEA----P-------RR--NRR---DTLLLF  222 (393)
T ss_pred             HHHHHHHHHHHhhcCccCCC----Cccccc------------------cccc----c-------cc--ccc---cHHHHH
Confidence            776654 4445567886531    110000                  0000    0       00  001   011111


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372          160 STWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  238 (402)
                      ...+.....++....+.|.++++ +++++.+.+.            ......++.+++.++.|+++||+|||+.+..+..
T Consensus       223 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~------------~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~  290 (393)
T PRK15011        223 VICTLMWGTNSLYIINMPLFIINELHLPEKLAGV------------MMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAV  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            11122222333444567777754 7777765443            4444455667788899999999999998776654


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      ...+........                     .+.+.......+....... ..+....+..|.+|++ |+++.++.+.
T Consensus       291 ~~~~~~~~~~~~---------------------~~~~~~l~~~~l~~~~~g~-~~~~~~~~~~~~~p~~-~g~~~~~~~~  347 (393)
T PRK15011        291 AGVCFYAGMLMA---------------------HSPAILLGLQLLNAIYIGI-LGGIGMLYFQDLMPGQ-AGSATTLYTN  347 (393)
T ss_pred             HHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCC-cchHHHHHHH
Confidence            443332222111                     1111222111111111111 1112234557888864 8999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372          319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPET  366 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et  366 (402)
                      ...+|..+++.+.+.+.+..  +|+..+.+.+++.+++.+..+++||+
T Consensus       348 ~~~lg~~~g~~l~G~i~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~  393 (393)
T PRK15011        348 TSRVGWIIAGSLAGIVAEIW--NYHAVFWFALVMIIATLFCLLRIKDV  393 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999877  88888888888888888777776653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.84  E-value=6.2e-19  Score=163.97  Aligned_cols=265  Identities=12%  Similarity=-0.025  Sum_probs=169.3

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|+.|+++|++++++.+.+..+|.++++.+++.+.                       ...|||+.+++.++.
T Consensus       131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~-----------------------~~~g~~~~~~~~~~~  187 (399)
T PRK05122        131 TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY-----------------------HWGGLAGLGLLIMLL  187 (399)
T ss_pred             chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH-----------------------HcccHHHHHHHHHHH
Confidence            455677899999999999999999999999999999999887                       667899998887666


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      .++.++.....|+++.     ++++                            +.+..+.     .++.+....    ..
T Consensus       188 ~~~~~~~~~~~~~~~~-----~~~~----------------------------~~~~~~~-----~~~~~~~~~----~~  225 (399)
T PRK05122        188 ALLGLLLARPRPAVPP-----VKGE----------------------------RLPFRRV-----LGRVWPYGM----GL  225 (399)
T ss_pred             HHHHHHHHhcCCCCCC-----CCcc----------------------------chhHHHH-----HHHHHHHHH----HH
Confidence            5554443333333221     0000                            0000001     111111111    11


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI  242 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  242 (402)
                      ......+.....+.+.+..+.+++..  +.            ......++.+++.++.+++.||+|||+.+..+..+..+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~  291 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAARGWDGA--AL------------ALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEIL  291 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccc--hH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            11222333444556666666555221  11            33445566777888899999999999988877766666


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA  322 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  322 (402)
                      +.+++...                     .+.+.... ..+..+++.....+.......|.+|++.|+++.++.+....+
T Consensus       292 ~~~~~~~~---------------------~~~~~~~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  349 (399)
T PRK05122        292 GLLLLWLA---------------------PSPWMALI-GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDL  349 (399)
T ss_pred             HHHHHHHh---------------------ccHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            65544432                     12222222 222222222223334445567889999999999999999999


Q ss_pred             HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCC
Q 042372          323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLS  370 (402)
Q Consensus       323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~  370 (402)
                      |..+++.+.+.+.+..  +|+..+++.+++.+++.++.+++++.++++
T Consensus       350 g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (399)
T PRK05122        350 SLGITGPLAGLVASWF--GYPSIFLAAALAALLGLALTWLLYRRAPRA  395 (399)
T ss_pred             HHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            9999999999998877  889999988888888877777665544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.84  E-value=8.8e-20  Score=171.87  Aligned_cols=285  Identities=12%  Similarity=0.051  Sum_probs=168.5

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA   83 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~   83 (402)
                      ...+++.++++ ++|+++.++.+.+..+|..+++.+++.+.                       +.+|||+.|++.+++.
T Consensus       128 ~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~-----------------------~~~gwr~~f~~~~~~~  183 (455)
T TIGR00892       128 PSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF-----------------------ESFGWRGSFLILGGLL  183 (455)
T ss_pred             HHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH-----------------------HHhChHHHHHHHHHHH
Confidence            44567788885 78999999999999999999999998887                       5678999999988776


Q ss_pred             HHHHHHHhhc-CCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           84 ALTYYWRMKM-PETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        84 ~~~~~~~~~l-pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      ++..+..+++ ++.+..    +..+++..+   .......   .++.+. ....+...+....+.+++  +.++......
T Consensus       184 ~~~~v~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  250 (455)
T TIGR00892       184 LHCCVCGALMRPVGPSQ----RVSKSKSKE---GLPPDGS---TKKLSK-KSTAEKINRFLDFSLFTH--RGFLVYLSGN  250 (455)
T ss_pred             HHHHHHHHHhCCCCccc----ccccccccc---cCCCCCc---cccccc-cchhhhhhhhcchHHhcC--chHHHHHHHH
Confidence            6554444343 322211    000000000   0000000   000000 000000011111112222  2333443444


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chhHHHHHHH--H
Q 042372          163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRFIIQLGGF--L  238 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~--~  238 (402)
                      +.....++....++|.+.++.|++....+.            ...+..++.+++.++.++++||.  ++|+....+.  +
T Consensus       251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  318 (455)
T TIGR00892       251 VIMFLGFFAPIIFLVPYAKDKGVDEYEAAF------------LLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL  318 (455)
T ss_pred             HHHHHHccchHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence            444555666667788888888888775544            66667777888888899999973  3443333322  2


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      ..+++.++....                     .+.+.+ .+..+..+.......+...++..|.+|++.++++.|+.+.
T Consensus       319 ~~~l~~ll~~~~---------------------~~~~~~-~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~  376 (455)
T TIGR00892       319 FNGLTHLLCALA---------------------GDYTGL-VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTI  376 (455)
T ss_pred             HHHHHHHHHHHh---------------------chHHHH-HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHH
Confidence            222222222111                     222222 2223333333334445566778899999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372          319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS  360 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (402)
                      ...+|.+++|.+.+.+.+..+ +|+..|++.+++.+++.+..
T Consensus       377 ~~~lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~li~~~~~  417 (455)
T TIGR00892       377 VECCAVLIGPPLAGRLVDATK-NYKYIFYASGSIVVSAGLFL  417 (455)
T ss_pred             HHHHHHHccccceeeeehhcC-CcchHHHHhhHHHHHHHHHH
Confidence            999999999999999888764 58888888877776665543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.84  E-value=1.2e-18  Score=161.45  Aligned_cols=270  Identities=7%  Similarity=-0.017  Sum_probs=175.5

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCC-cchhHHHHHhhH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGD-YLWRIVLMFGAV   81 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Wr~~f~~~~i   81 (402)
                      +....++.|++| ++|+++++.+..+..+|..+++.++..+.                       +. .+||..+.+.++
T Consensus       116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~-----------------------~~~~~w~~~~~~~~~  171 (393)
T PRK09705        116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV-----------------------QHSETWYQTLAWWAL  171 (393)
T ss_pred             hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhcCCHHHHHHHHHH
Confidence            456678899986 78999999999999999999999988876                       33 479998877665


Q ss_pred             HHHHHHHHHhhcC-CCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 PAALTYYWRMKMP-ETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~~~~~~~~~~~lp-esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      ..++.++..+... +.|+       ++++                  +       +....+.+++    +   ..+....
T Consensus       172 ~~~~~~~~~~~~~~~~~~-------~~~~------------------~-------~~~~~~~l~~----~---~~~~l~~  212 (393)
T PRK09705        172 PAVVALFAWWWQSAREVA-------SSHK------------------T-------TTTPVRVVFT----P---RAWTLGV  212 (393)
T ss_pred             HHHHHHHHHHHHhcCCCc-------cccC------------------C-------CcCCcccccC----H---hHHHHHH
Confidence            5554433332221 1110       0000                  0       0000111111    1   1223333


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      ..+.....++....+.|.++++.|++..+.+.            ...+..++.+++.++.+++.||++||+.+.++..+.
T Consensus       213 ~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~------------~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~  280 (393)
T PRK09705        213 YFGLINGGYASLIAWLPAFYIEIGASAQYSGS------------LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ  280 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhH------------HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            34444556677888889998888888775544            677788889999999999999999999888876665


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhhhHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRSTCHGISAAA  319 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~  319 (402)
                      .++..++....                    .+.... ... + .+.+.....+.......+.. |++.|++..++.+..
T Consensus       281 ~~~~~~~~~~~--------------------~~~~~~-~~~-l-~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  337 (393)
T PRK09705        281 LVGFCGFIWLP--------------------LQLPVL-WAM-V-CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGI  337 (393)
T ss_pred             HHHHHHHHHcc--------------------chHHHH-HHH-H-HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            55544333211                    111111 111 1 12222233344444455666 467899999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCCCCc
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNGLSL  371 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~~~~  371 (402)
                      ..++..++|.+.+++.+..+ ++...|.+.+++.++..+..+.+ ||++++..
T Consensus       338 ~~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        338 GFIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            99999999999999999875 57777888777777666665544 88876654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.84  E-value=4.7e-19  Score=163.31  Aligned_cols=264  Identities=12%  Similarity=0.040  Sum_probs=165.6

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA   83 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~   83 (402)
                      ....++.|++| ++|+++.++...+.++|.++++.+...+.                       +..+||+.|++.++..
T Consensus       111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~f~~~~~~~  166 (377)
T TIGR00890       111 IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI-----------------------NLEGVPAAFIYMGIIF  166 (377)
T ss_pred             hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH-----------------------hcccHHHHHHHHHHHH
Confidence            44566788886 67999999999999999887766666554                       5568999999988777


Q ss_pred             HHHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           84 ALTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        84 ~~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      ++..+. .++++|+|+.  . ++++++                   .   ++++...++.+++    +   ..+......
T Consensus       167 ~~~~~~~~~~~~~~~~~--~-~~~~~~-------------------~---~~~~~~~~~~~~~----~---~~~~~~~~~  214 (377)
T TIGR00890       167 LLVIVLGAFLIGYPPGQ--L-IKTNIE-------------------V---SVKDYTVWEMLRT----P---QFWVLYLSF  214 (377)
T ss_pred             HHHHHHHHHheecCchh--c-cccCcc-------------------c---chhhhhHHHHHcC----c---cHHHHHHHH
Confidence            665443 4445554321  0 000000                   0   0000011111111    1   122222222


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI  242 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  242 (402)
                      +...........+.+.+.++.+.+..+.+.            ......++.+++.++.|++.||+|||+.+..+..+..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       215 FLNAVSGLLLIGLYKPYGQSLGLSDGFLVL------------AVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAV  282 (377)
T ss_pred             HHHhHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            222223333334455566677776654333            66677788888999999999999999998888777666


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA  322 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  322 (402)
                      +.+.+.....                   ... ..........+.......+....+..|.+|++.|+++.|+.+....+
T Consensus       283 ~~~~~~~~~~-------------------~~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  342 (377)
T TIGR00890       283 GMAAMLFIPM-------------------LND-VLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAV  342 (377)
T ss_pred             HHHHHHHccc-------------------chh-HHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHH
Confidence            6555443210                   111 11111112222222233344456778999999999999999999999


Q ss_pred             HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHH
Q 042372          323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGF  357 (402)
Q Consensus       323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (402)
                      |..++|.+.+.+.+..  +|+..|.+.+++.+++.
T Consensus       343 g~~~~~~~~g~l~~~~--g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       343 AGIFGGLIASHALTEI--GFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHhhh--chhhHHHHHHHHHHHhc
Confidence            9999999999998877  88888888877776654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.83  E-value=6.6e-19  Score=166.83  Aligned_cols=281  Identities=12%  Similarity=0.029  Sum_probs=155.6

Q ss_pred             hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      ...+++|++|+++||+++++......+|..+++.+...+.......              ...+..|||+.|++.+++++
T Consensus       144 ~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~--------------~~~~~~gWr~~f~i~g~l~l  209 (476)
T PLN00028        144 CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA--------------GAPSFTAWRIAFFVPGLLHI  209 (476)
T ss_pred             HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCcchhhhHHHHHHHHHHHH
Confidence            3457899999999999999998877788877776665543221110              00023589999999888776


Q ss_pred             HHHHHHhhcC-CCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           85 LTYYWRMKMP-ETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        85 ~~~~~~~~lp-esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      +..+..++++ +.|+.      +.++.    .+           +.   +.++....+.++.. .+.  +.++...+.++
T Consensus       210 ~~~l~~~~~~~~~p~~------~~~~~----~~-----------~~---~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~  262 (476)
T PLN00028        210 IMGILVLTLGQDLPDG------NYREL----KK-----------SG---TMPKDSFSKVLRYG-VTN--YRTWILALTYG  262 (476)
T ss_pred             HHHHHHHHHcCcCCCC------chhhH----Hh-----------cC---ccccccHHHHHHHH-HcC--chhHHHHHHHH
Confidence            6554444444 43421      10000    00           00   00000111111111 111  12333333333


Q ss_pred             HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH-------HHHH
Q 042372          164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI-------IQLG  235 (402)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-------~~~~  235 (402)
                      ......+....+.|.++.+ .|++....+.            ...+..++.+++.+++|+++||++||+       ...+
T Consensus       263 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~------------~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~  330 (476)
T PLN00028        263 YSFGVELTMDNIIAEYFYDRFGLSLETAGA------------IAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWI  330 (476)
T ss_pred             HHHHHHHHHHhHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHH
Confidence            3334445556677777654 6888775444            677778888899999999999998762       2222


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHH
Q 042372          236 GFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGI  315 (402)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  315 (402)
                      ..++.+++.+++...                     .+.......+.+. .++.....+..+.+..++.| +.|++..|+
T Consensus       331 ~~~l~~i~~~~~~~~---------------------~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~  387 (476)
T PLN00028        331 VQTLGGVFCIWLGRA---------------------NSLGAAIVVMILF-SIFVQAACGATFGIVPFVSR-RSLGVISGL  387 (476)
T ss_pred             HHHHHHHHHHHhccc---------------------chHHHHHHHHHHH-HHHHHHhhhhhcccCcccCh-hhchhhhhh
Confidence            222211211111110                     1111111111111 11111222345555667655 689999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          316 SAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       316 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                      .+..+.+|+++++.+.+. .+..  +|...|.+.+++.+++.++.++++
T Consensus       388 ~~~~g~lg~~i~~~l~~~-~~~~--~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        388 TGAGGNVGAVLTQLLFFT-GSSY--STETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhccccHHHHHHHHHHHh-cCCc--cHhhHHHHHHHHHHHHHHHHHhee
Confidence            988887777777766541 1111  688899998888888888777663

>PRK03699 putative transporter; Provisional

Probab=99.83  E-value=4.8e-19  Score=164.23  Aligned_cols=270  Identities=10%  Similarity=0.053  Sum_probs=174.0

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++....++.|++|+++|++.++..+....+|..+++.+.+.+..                      ...+||+.|.+.++
T Consensus       113 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------------------~~~gw~~~f~~~~~  170 (394)
T PRK03699        113 MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA----------------------RSIEWYWVYACIGL  170 (394)
T ss_pred             ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------ccccHHHHHHHHHH
Confidence            35567889999999999999999988889999999988777641                      34689999998777


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      +.++..++.++ .+.|+.  . ++++++                  +. +   ..       +.. .+   +.++.....
T Consensus       171 ~~~~~~~~~~~-~~~p~~--~-~~~~~~------------------~~-~---~~-------~~~-~~---~~~~~~~~~  213 (394)
T PRK03699        171 VYVAIFILTLF-SEFPAL--G-KHAPKA------------------DK-P---VA-------KEK-WG---IGVLFLAIA  213 (394)
T ss_pred             HHHHHHHHHHh-cCCccc--c-ccCccc------------------cC-c---cc-------ccc-CC---hHHHHHHHH
Confidence            76655443332 222221  0 000000                  00 0   00       000 01   123334444


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .++....++....|.|.++++ .|++..+.+.            ......++.+++.++.++++||++||+.+.....+.
T Consensus       214 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~  281 (394)
T PRK03699        214 ALLYILAQLTFISWVPEYAQKKFGMSLEDAGN------------LVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLA  281 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHhhH------------HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence            445555667778899999965 7888775544            566667778889999999999999999888766555


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .+...++...                     .+...... ..+..++...+..+...++..|..|. .++...+......
T Consensus       282 ~~~~~~~~~~---------------------~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~  338 (394)
T PRK03699        282 LVLMYLFVNT---------------------DDPSHLLY-AILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCG  338 (394)
T ss_pred             HHHHHHHHHc---------------------CCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhh
Confidence            4443333221                     11112222 22222222333344444555666664 3567788888899


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      .+|..++|.+.+++.+..  +++..+++.+++.+++.+....++++.
T Consensus       339 ~~g~~i~p~~~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (394)
T PRK03699        339 TIGTMLTFVVTSPIVAHF--GLQAALLTANGLYAVVFVMCILLGFVS  383 (394)
T ss_pred             hHHHHHHHHHHHHHHHHh--CchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987  888888888888877777666665443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.83  E-value=8.1e-19  Score=161.81  Aligned_cols=265  Identities=15%  Similarity=0.132  Sum_probs=163.2

Q ss_pred             CchhHHhhhhccccchhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            3 PLSAVIMSEYANKRTRGAF--IAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~--~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      |...+++.|+.|+++|++.  .+....+.++|.++++.+++.+.                       +..+||+.|++.+
T Consensus       106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~-----------------------~~~~~~~~f~~~~  162 (375)
T TIGR00899       106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA-----------------------LGFGFTVMFLTAA  162 (375)
T ss_pred             HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH-----------------------HhcccHHHHHHHH
Confidence            4456677888888777754  57778888999999999999887                       5678999999988


Q ss_pred             HHHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372           81 VPAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT  159 (402)
Q Consensus        81 i~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (402)
                      +..++..+ ..+++||+|+..   +++ ++                          +...++.++++    ..+......
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~--------------------------~~~~~~~~~~~----~~~~~~~~~  208 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGA---PGA-LT--------------------------RLEVRGLLASR----DTRLLFVAC  208 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCc---ccc-cC--------------------------cchhhhhhcCc----chHHHHHHH
Confidence            87665544 445589876531   100 00                          00000011111    111111111


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372          160 STWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  238 (402)
                         +...........+.|.+++ +.|.++.+.+.            ......+..+++.++.|++.||+|||+.+.++.+
T Consensus       209 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~  273 (375)
T TIGR00899       209 ---TLMWGCNILYIINMPLLIIHELGLPDKLAGL------------MMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAAL  273 (375)
T ss_pred             ---HHHHHHHHHHHhhhHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHH
Confidence               1111122233344566654 46777665433            3344445556677789999999999998877765


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      +..+....+...                     ++.+..... ....+++.....+....+..|..|++ |+++.++.+.
T Consensus       274 ~~~~~~~~~~~~---------------------~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~  330 (375)
T TIGR00899       274 AGVAFYTGLAAD---------------------NSLWALLML-QLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTN  330 (375)
T ss_pred             HHHHHHHHHHHH---------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHH
Confidence            544433322221                     112222222 22212211222344556678888865 5699999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                      ..++|..++|.+.+.+.+..  +|+..+++.+++.+++.++..+++
T Consensus       331 ~~~~g~~~g~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       331 TGRVGWIIAGSVGGILAERW--SYHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHheec
Confidence            99999999999999998877  888999988888888777766554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.82  E-value=1.3e-18  Score=153.05  Aligned_cols=274  Identities=15%  Similarity=0.197  Sum_probs=198.7

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcc---hhHHHHH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYL---WRIVLMF   78 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Wr~~f~~   78 (402)
                      ++++..++++++||+++|.++|+.. ..++|..+...++..+.                       ...+   ||....+
T Consensus       122 Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~-----------------------~~~g~~~w~~~~~i  177 (417)
T COG2223         122 FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA-----------------------VAFGFLAWRNVAGI  177 (417)
T ss_pred             ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH-----------------------HHHhhHHHHHHHHH
Confidence            5678899999999999999999999 88999999999998887                       4445   9999888


Q ss_pred             hhHHHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHH
Q 042372           79 GAVPAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLG  157 (402)
Q Consensus        79 ~~i~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (402)
                      -.++.++ .+..++.+.|.|...  ...++.+. .                             -++....+   +..|.
T Consensus       178 ~~~~l~v~~v~~~~~~~d~p~~r--~~~~~~~~-~-----------------------------~~~~v~~~---~~~W~  222 (417)
T COG2223         178 YVVALAIAAVLAWLGMNDVPEHR--ASVKPQLP-A-----------------------------QLKAVFSN---KDTWL  222 (417)
T ss_pred             HHHHHHHHHHHHHHHhCCChhhh--ccccccch-h-----------------------------HHHHHhcC---cchHH
Confidence            7776666 455566677776531  01111100 0                             00111111   25666


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372          158 TTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG  236 (402)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~  236 (402)
                      +++.++.....+.++..++|.|+++ +|.++.+++.            ......+...+..+.+|+++||+|.++.+.+.
T Consensus       223 lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~------------~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~  290 (417)
T COG2223         223 LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGL------------IAFLFPLIGALARPLGGWLSDRIGGRRVTLAV  290 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHH------------HHHHHHHHHHHHHhccchhhhhccchhHHHHH
Confidence            7777777777888889999999886 8998887654            66666677777788999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372          237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS  316 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  316 (402)
                      +.+++++..++........+.              .+.......+.....+.+.+ ....+.++..++|.+ -|...|+.
T Consensus       291 f~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~l~l~~~~G~G-nGsvfk~Ip~if~~~-~G~v~G~v  354 (417)
T COG2223         291 FVGMALAAALLSLFLTGFGHG--------------GSFVVFVAVFLALFVFAGLG-NGSVFKMIPVIFPKE-TGAVTGIV  354 (417)
T ss_pred             HHHHHHHHHHHHccccccccC--------------cchHHHHHHHHHHHHHhccC-cchheeechHHHHhh-hhHHHHHH
Confidence            888888887776653221111              22223333333333333334 346677888888864 58889999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      ..++.+|++.-|...+...+.++ .+...|+++..+.+++.+..+.+
T Consensus       355 ga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         355 GAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999886 68899999999999988887755

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.82  E-value=3.4e-18  Score=155.94  Aligned_cols=245  Identities=20%  Similarity=0.298  Sum_probs=187.2

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      .+...+++.|++|+++|++..++...+..+|..+++.+++.+.                       +..+||+.+++.++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~  161 (352)
T cd06174         105 YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA-----------------------ESLGWRWLFLILAI  161 (352)
T ss_pred             cHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhHHHHHHHHHH
Confidence            3567789999999999999999999999999999999999887                       45579999999887


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      ..++..+...+++                                                          +.++.....
T Consensus       162 ~~~~~~~~~~~~~----------------------------------------------------------~~~~~~~~~  183 (352)
T cd06174         162 LGLLLALLLLFLL----------------------------------------------------------RLLLLLALA  183 (352)
T ss_pred             HHHHHHHHHHHHH----------------------------------------------------------HHHHHHHHH
Confidence            7776655543332                                                          012333344


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhc-CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH-HHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPAT-GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI-IQLGGFLL  239 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-~~~~~~~~  239 (402)
                      .+...........+.|.+.++. +.+..+.+.            ......++.+++.++.+++.||+|||+ .+..+..+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  251 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGL------------LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLL  251 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4444555666677778887774 777765444            777778888899999999999999999 88888877


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ..++.+.....                     .+. ..........+.+.....+....+..|..|++.|++..++.+..
T Consensus       252 ~~i~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (352)
T cd06174         252 AALGLLLLALA---------------------PSL-ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTF  309 (352)
T ss_pred             HHHHHHHHHHh---------------------ccH-HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            77776666553                     122 22333333344444555667888899999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      ..++..+++.+.+.+.+..  +++..+.+.+++.+++.+..+++
T Consensus       310 ~~~~~~i~~~i~g~l~~~~--~~~~~~~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         310 GSLGGALGPLLAGLLLDTG--GYGGVFLILAALALLAALLLLLL  351 (352)
T ss_pred             HHHHHHHHHHHHHHHhccc--CcchHHHHHHHHHHHHHHHheec
Confidence            9999999999999998766  88999999988888877766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.81  E-value=2.6e-18  Score=160.33  Aligned_cols=272  Identities=12%  Similarity=0.038  Sum_probs=167.8

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +....++.|+.|+++|+++.++...+..+|.++++.+++.+.                       +..+||+.|++.++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~~~~~~~~~~~~  181 (408)
T PRK09874        125 PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA-----------------------DSYGLRPVFFITASV  181 (408)
T ss_pred             HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhCHHHHHHHHHHH
Confidence            345667889999999999999999999999999999999886                       556899999988777


Q ss_pred             HHHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++.. +..+++||.++.  .+++++.+. ++.                         .+.++++   +   ........
T Consensus       182 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~-------------------------~~~~~~~---~---~~~~~~~~  227 (408)
T PRK09874        182 LFLCFLVTLFCIRENFQP--VSKKEMLHM-REV-------------------------VTSLKNP---K---LVLSLFVT  227 (408)
T ss_pred             HHHHHHHHHHHhccCccc--ccchhhhHH-HHH-------------------------HHhCcCC---c---hHHHHHHH
Confidence            66544 344556765421  101110000 000                         0000111   1   11111111


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  241 (402)
                      .+...........+.+.+..+.+.+......        ..+....+..++.+++.+..|+++||+|||+.+..+..+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  299 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAF--------ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSV  299 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence            1111122222333445555553322221111        22224445566677777888999999999999888776655


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK  321 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  321 (402)
                      ++.+.....                     .+. ....+..+..+.+.....+...++..+..|++.|++..++.+....
T Consensus       300 ~~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  357 (408)
T PRK09874        300 LLLIPMSFV---------------------QTP-LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRD  357 (408)
T ss_pred             HHHHHHHHh---------------------ccH-HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHH
Confidence            554443332                     111 1222222222222333344455556778898999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +|..++|.+.+.+.+..  +|+..|++.+++.+++.+..++.
T Consensus       358 ~g~~~gp~~~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        358 IGNVTGPLMGAAISANY--GFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHhhHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998877  89999999988888877776654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.81  E-value=4.7e-18  Score=155.96  Aligned_cols=250  Identities=10%  Similarity=0.045  Sum_probs=161.2

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |...+++.|++|+++|+++.++.+.+..+|.++++.+++.+.                       +..+||+.|++.++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------------------~~~g~~~~~~~~~~~  167 (365)
T TIGR00900       111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY-----------------------ATLGIKWAIWVDAVG  167 (365)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999887                       557899999987776


Q ss_pred             HHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           83 AALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        83 ~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      .++..+..+.  .||.++.  .+++.+++..+..                         .+.++. .+++  +.++....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------------------~~~~~~-~~~~--~~~~~~~~  217 (365)
T TIGR00900       168 FAISALLIVSVRIPELAAS--EIQALSNAVLRDT-------------------------REGIKF-VLKN--PLLRTLLL  217 (365)
T ss_pred             HHHHHHHHHhcccccCCCc--cccccchhHHHHH-------------------------HhHHHH-HHcC--cHHHHHHH
Confidence            6655444333  3433221  0000000000000                         000111 1111  12222222


Q ss_pred             HHHHHHHHHHHHH-HhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372          161 TWFLLDIAFYTIN-LTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       161 ~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  238 (402)
                      ..+.......... .+.|.+.++ ++.+..+.+.            ......++.+++.++.+++.||++||+.+..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  285 (365)
T TIGR00900       218 LALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGW------------VLAAFGLGALLGALLLGLLGRYFKRMALMTGAIF  285 (365)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence            2333333333333 566777776 6777765443            6666777888888899999999999998887766


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      +.+++...+...                     ........+..+..+++.....+...++..|.+|++.|+++.|+.+.
T Consensus       286 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (365)
T TIGR00900       286 VIGLAILVVGLT---------------------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFS  344 (365)
T ss_pred             HHHHHHHHHHhh---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            555555544432                     11112222222333333333455667788999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhc
Q 042372          319 AGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~  338 (402)
                      ...++..++|.+.+.+.+..
T Consensus       345 ~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       345 LSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999988753

>PRK12382 putative transporter; Provisional

Probab=99.81  E-value=5.6e-18  Score=157.16  Aligned_cols=258  Identities=12%  Similarity=0.020  Sum_probs=165.0

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|+.|+++|++++++.+.+..+|.++++.+++.+.                       ...|||+.+.+..+.
T Consensus       131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~g~~~~~~~~~~~  187 (392)
T PRK12382        131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH-----------------------SHFGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH-----------------------hccChHHHHHHHHHH
Confidence            345567889999999999999999999999999999998886                       567899987766555


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      .++.+......||.+..    +++                             +.+.++.+     +..++..+.    .
T Consensus       188 ~~~~~~~~~~~~~~~~~----~~~-----------------------------~~~~~~~~-----~~~~~~~~~----~  225 (392)
T PRK12382        188 PLLAWAFNGTVRKVPAH----AGE-----------------------------RPSLWSVV-----GLIWKPGLG----L  225 (392)
T ss_pred             HHHHHHHHHhccCCCCC----ccc-----------------------------CchHHHHH-----HHHHHhHHH----H
Confidence            44433332233432210    000                             00001111     111111111    1


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI  242 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  242 (402)
                      ......+.....+.+.++++.+++..  +.            ......++.+++.++.|++.||+|||+.+..+..+..+
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  291 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFASKGWAMA--GF------------TLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETV  291 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCCchh--HH------------HHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHH
Confidence            11222333445566666666655422  11            33345566677888999999999999988888776666


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA  322 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  322 (402)
                      +.+++...                     .+.+.... .....+.+.....+...+...|.+|++.|+++.|+.+....+
T Consensus       292 ~~~~~~~~---------------------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  349 (392)
T PRK12382        292 GLLLLWLA---------------------PTAWVALA-GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDI  349 (392)
T ss_pred             HHHHHHHc---------------------ccHHHHHH-HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            65544432                     11222222 222222222223344555668889999999999999999999


Q ss_pred             HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      |..++|.+.+.+.+..  +|+..|.+.+++.+++.++.++.
T Consensus       350 g~~ig~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        350 AYGVSGPLAGMLATSF--GYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999987  89999999888888877766543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.80  E-value=3.3e-19  Score=165.56  Aligned_cols=195  Identities=14%  Similarity=0.174  Sum_probs=133.9

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ||....+++.|+.+++||+.++++.++.++|.++|++++..+.+..+                 .....||||.|++.++
T Consensus       152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~-----------------~~~~~gW~~~FiI~G~  214 (495)
T KOG2533|consen  152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG-----------------SGGLAGWRWLFIIEGV  214 (495)
T ss_pred             chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC-----------------CCCcCCceeehhHHHH
Confidence            68889999999999999999999999999999999999999765222                 1267899999999887


Q ss_pred             HHHH-HHHHHhhcCCCch--hHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHH
Q 042372           82 PAAL-TYYWRMKMPETAR--YTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGT  158 (402)
Q Consensus        82 ~~~~-~~~~~~~lpesp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (402)
                      +.++ +++..+++|+.|.  |..    .++|..-..++..+.+     .+..+.+.+....++.++.       ..++..
T Consensus       215 i~~~~gi~~f~~lp~~P~~~~fl----~~~ek~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~d-------p~vw~~  278 (495)
T KOG2533|consen  215 ITLVLGIVVFFFLPDNPSKAWFL----TDEEKELVVERLRESP-----SGGIENKFKWKGFKEALKD-------PGVWPF  278 (495)
T ss_pred             HHHHHHheEEEEecCChhhcccc----chHHHHHHHHHHHhcc-----CCCcccccCHHHHHHHHhc-------hhHHHH
Confidence            7776 5566677999997  321    1111111111111000     0000000011111111111       357778


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhHHH
Q 042372          159 TSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFIIQ  233 (402)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~~~  233 (402)
                      .++.++.....+++..|+|.++.+ .|++..+++.            +.....++.+++.+++|+++||    ..+|...
T Consensus       279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~------------ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~  346 (495)
T KOG2533|consen  279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANL------------LSTPYDVGGIVGLILAGYLSDRLKTIFARRLLF  346 (495)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhcc------------ccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            888888888899999999999998 5688776655            8888889999999999999999    5566655


Q ss_pred             HHHHHHHH
Q 042372          234 LGGFLLMS  241 (402)
Q Consensus       234 ~~~~~~~~  241 (402)
                      .....+..
T Consensus       347 ~~~~~~~~  354 (495)
T KOG2533|consen  347 IVFLCLYA  354 (495)
T ss_pred             HHHHHHHH
Confidence            55544333

>TIGR00897 2A0118 polyol permease family

Probab=99.80  E-value=1.4e-17  Score=154.90  Aligned_cols=273  Identities=10%  Similarity=-0.030  Sum_probs=163.2

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGI-LFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      ...+++.|+.|+++|++++++.+.+.++|. ++++.+++.+.                       +..||+..++.....
T Consensus       125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~-----------------------~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI-----------------------PAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------cccchHHHHHHHHHH
Confidence            345677899999999999999999999997 57888887775                       455655544443322


Q ss_pred             HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++ .++..++.+|.++.  .+++++++                          ..+..+.++ ..+++  +.++.....
T Consensus       182 ~~~~~~~~~~~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~-~~~~~--~~~~~~~~~  230 (402)
T TIGR00897       182 VLTGGVIALFSNKDIFTP--QHMQTREK--------------------------FSELGKAAT-ILFTN--PNVLLGGMV  230 (402)
T ss_pred             HHHHHHHHHhccCCCCCc--ccccCCcc--------------------------hhhHHHHHH-HHHcC--hhHHHHHHH
Confidence            222 22223334443210  00000000                          000000011 11111  233444444


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH-HHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL-GGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-~~~~~~  240 (402)
                      .++....++....+.|.+.++.|++..+.+.            ......++.+++.++.|+++||+|||+.+. .+.+..
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~  298 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVAELGFSTSEWLQ------------IWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGC  298 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence            5555666778888999999888888775433            555667788899999999999999888664 222223


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .++.+.+........                .+.+.... ..+..+.+..+..+ ......|..| +.|+++.|+.+...
T Consensus       299 ~~~~~~l~~~~~~~~----------------~~~~~~~~-~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~  359 (402)
T TIGR00897       299 GIFTLALYYIPQHFG----------------HSFAVALI-IAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSA  359 (402)
T ss_pred             HHHHHHHHHHHHccC----------------CcHHHHHH-HHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHH
Confidence            332222222111000                11112212 22222221222222 2234466655 58999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .+++.++|.+.+.+.+..  ++...+++.+++.+++.++..|+
T Consensus       360 ~lg~~~gp~i~g~l~~~~--g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       360 GLSAFLAPAIAVLFIGFF--GAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999987  88899999888888877777665

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.80  E-value=3.3e-17  Score=152.34  Aligned_cols=273  Identities=13%  Similarity=0.056  Sum_probs=160.6

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCC-CcchhHHHHHhhH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQG-DYLWRIVLMFGAV   81 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Wr~~f~~~~i   81 (402)
                      |...+++.|+.|+++|+++.++...+..+|.++++.++..+.                       + ..|||..|++.++
T Consensus       113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~-----------------------~~~~gw~~~f~i~a~  169 (402)
T PRK11902        113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA-----------------------DRVLGWGNTYLLMAG  169 (402)
T ss_pred             HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH-----------------------hcccCHHHHHHHHHH
Confidence            455678999999999999999999999999999999988886                       3 3589999999887


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhh-hHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKH-GLHLLGTTS  160 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (402)
                      ..++..+..+++||+++.    ++++++..+..                         .+.++ ..++++ .+..+....
T Consensus       170 ~~l~~~l~~~~~~e~~~~----~~~~~~~~~~~-------------------------~~~~~-~l~~~~~~~~~l~~~~  219 (402)
T PRK11902        170 LMLAGALTTLWAPEPEVP----ARPPRSLGEAV-------------------------VGPLR-DFFSRRGAWALLLLIV  219 (402)
T ss_pred             HHHHHHHHHHhcCCCccc----ccccchhHHHH-------------------------HHHHH-HHHhCcCHHHHHHHHH
Confidence            766665556678886542    11111000000                         00111 112221 111121111


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHH-HHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMF-LVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      .........+  ....+.+.++.|+++.+.+.            .. ....++.+++.++++++.||+|||+.+..+..+
T Consensus       220 l~~~~~~~~~--~~~~~~l~~~~G~~~~~~g~------------~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~  285 (402)
T PRK11902        220 LYKLGDAFAG--SLSTTFLIRGAGFSAGEVGI------------VNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVL  285 (402)
T ss_pred             HHHhHHHHHH--HHHHHHHHHhcCCCHHHHHH------------HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            1111111111  12223344557888775433            33 333456778888999999999999887766655


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH---HHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG---LTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS  316 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  316 (402)
                      ..+..+.+...... .                .+.+.......   +..+............++.+.+|.+.+    ++.
T Consensus       286 ~~l~~l~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~  344 (402)
T PRK11902        286 QAVSNLGYWVLAVT-P----------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALL  344 (402)
T ss_pred             HHHHHHHHHHHHhc-C----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHH
Confidence            54443333221110 0                11112221111   122222233344555677777776554    445


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhccc
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPE  365 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  365 (402)
                      +....++..+++.+.+.+.+..  ||+..|.+.+++.+++.++.+..+.
T Consensus       345 ~~~~~l~~~~~~~~~G~l~~~~--G~~~~f~~~~~~~~~~~~~~~~~~~  391 (402)
T PRK11902        345 SALASVGRVYVGPTSGYLVEAY--GWPGFYLMTVVIALPGLALLWLMRG  391 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555667766667888999888  8999999988888888777665543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.80  E-value=1.7e-18  Score=159.62  Aligned_cols=274  Identities=13%  Similarity=0.166  Sum_probs=161.6

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAG-VISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      +|...+++.|++|+++|+++.++.+.+..+|.++++ .++..+.                       ...+||+.|++.+
T Consensus       101 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~  157 (379)
T TIGR00881       101 WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA-----------------------ELYSWHWVFIVPG  157 (379)
T ss_pred             CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH-----------------------hcCCchhHHHHHH
Confidence            467788999999999999999999999999999999 4666554                       5578999999877


Q ss_pred             HHHHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372           81 VPAAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT  159 (402)
Q Consensus        81 i~~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (402)
                      +..++ .++..+++||+|+...  .++.++.           .+++.++.++.++++...++.......++  +.++...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  222 (379)
T TIGR00881       158 IIAIIVSLICFLLLRDSPQSCG--LPPAEEM-----------PNEEPDGDAEKKEEELTKKQIFLQYVLLN--KVLWYIS  222 (379)
T ss_pred             HHHHHHHHHHheeeCCCccccc--cCccccC-----------cccccccccccccccccchHHHHHHHHhc--chHHHHH
Confidence            66555 4455556788764310  1110000           00000000000000111111111111121  2334444


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc-hhHHHHHHH
Q 042372          160 STWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG-RFIIQLGGF  237 (402)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g-rr~~~~~~~  237 (402)
                      +..+......+....+.|.++.+ .|++..+.+.            ......++.+++.++.+++.||.. ||+..+.. 
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~-  289 (379)
T TIGR00881       223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASW------------AFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAV-  289 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHcchhHHHHHHHHHHHcCCcchHHHH-
Confidence            44444445556667778888765 6887765444            666777888999999999999864 33322211 


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH
Q 042372          238 LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA  317 (402)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  317 (402)
                      .........+....  ....              .+. ....+.....+....+..+....+..|.+|++.|+++.|+.+
T Consensus       290 ~~~~~~~~~~~~~~--~~~~--------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  352 (379)
T TIGR00881       290 FFMALIIVSLLVYW--LNPA--------------ANP-LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVG  352 (379)
T ss_pred             HHHHHHHHHHHHHh--cCcc--------------hhH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence            11111111111110  0000              111 222222222232233444445567799999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHhhhcCCCchhh
Q 042372          318 AAGKAGAIVGAFGVQYYTQKGDKQIKQS  345 (402)
Q Consensus       318 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~  345 (402)
                      ....+|+.++|.+.+.+.+..  +|+..
T Consensus       353 ~~~~~g~~~~~~~~g~l~~~~--g~~~~  378 (379)
T TIGR00881       353 FFAYLGGILAGLPLGYLADGF--GWAGA  378 (379)
T ss_pred             HhhhhhhhhhhhhHHHHHHhh--ccccc
Confidence            999999999999999999977  66654

>PRK10504 putative transporter; Provisional

Probab=99.80  E-value=1.4e-17  Score=158.28  Aligned_cols=269  Identities=12%  Similarity=0.060  Sum_probs=159.3

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |...+++.|++|+++|++..++......+|..+++.+++.+.                       +..+||+.|++..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~-----------------------~~~gw~~~f~~~~~~  173 (471)
T PRK10504        117 PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV-----------------------EYASWHWIFLINIPV  173 (471)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----------------------hhccHHHHHHHHHHH
Confidence            456778899999999999999999999999999999999887                       567899999997776


Q ss_pred             HHHHHHH-HhhcCCCchhHhhhcCCHHHHHHHHH------Hhh--ccccccc---------------------cCCCCCC
Q 042372           83 AALTYYW-RMKMPETARYTALVEGNQKKAAVDMA------KVL--DTDINVA---------------------TSAYPAP  132 (402)
Q Consensus        83 ~~~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~------~~~--~~~~~~~---------------------~~~~~~~  132 (402)
                      .++..+. ....|+.+.-    ..+.+.......      ...  +.+....                     .++.+  
T Consensus       174 ~~l~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  247 (471)
T PRK10504        174 GIIGAIATLMLMPNYTMQ----TRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN--  247 (471)
T ss_pred             HHHHHHHHHHhCCCcccc----CCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            6554433 3345554311    111111100000      000  0000000                     00000  


Q ss_pred             CCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHh
Q 042372          133 VSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALF  211 (402)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i  211 (402)
                      ..++     .+..+.++++  .+.......++....+.....+.|.+++. .|.++...+.            ......+
T Consensus       248 ~~~~-----~~~~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~~~~~  308 (471)
T PRK10504        248 NNRA-----LFSLKLFRTR--TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGL------------MMIPMVL  308 (471)
T ss_pred             CCCC-----ccCHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHH
Confidence            0001     1111122211  22223333333333444555567877774 7777765443            5566667


Q ss_pred             hhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcC
Q 042372          212 ATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFG  291 (402)
Q Consensus       212 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (402)
                      +.+++.++.+++.||+|||+++..+..+..+...++.....    .              ... ....+.....+.+...
T Consensus       309 ~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----~--------------~~~-~~~~~~~~~~g~~~~~  369 (471)
T PRK10504        309 GSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL----L--------------GWY-YLLPFVLFLQGMVNST  369 (471)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc----c--------------ccH-HHHHHHHHHHHHHHHH
Confidence            77777788999999999999998887766666554443211    1              111 1111111111111122


Q ss_pred             CcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372          292 PNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       292 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      ..+....+..+..|++.|+.+.++.++...+|..+|+.+.+.+.+..
T Consensus       370 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        370 RFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22344456678899999999999999999999999999998887765

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.80  E-value=2.7e-17  Score=151.88  Aligned_cols=262  Identities=12%  Similarity=0.129  Sum_probs=159.9

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA   83 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~   83 (402)
                      ...+++.|++|+++|+++++....+..+|..+++.+++.+.                       +..+||+.|++.++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------------------~~~gwr~~f~~~~~~~  167 (382)
T PRK10091        111 VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS-----------------------QEFSWRYTFLLIAVFN  167 (382)
T ss_pred             HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh-----------------------hhccHHHHHHHHHHHH
Confidence            44667899999999999999999999999999999998886                       5678999999987766


Q ss_pred             HHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           84 ALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        84 ~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      ++.. ...+++||.++.   ++.+.++                             ..     +..++.  ..+......
T Consensus       168 ~~~~~~~~~~lp~~~~~---~~~~~~~-----------------------------~~-----~~~~~~--~~~~~~~~~  208 (382)
T PRK10091        168 IAVLASIYFWVPDIRDE---AKGGLRE-----------------------------QF-----HFLRSP--APWLIFAAT  208 (382)
T ss_pred             HHHHHHHHHhCCCCCcc---cccCHHH-----------------------------HH-----HHhcCh--HHHHHHHHH
Confidence            5543 345567875421   0000000                             00     011111  111222222


Q ss_pred             HHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  241 (402)
                      +......+....+.+.++. ..|+++.+.+.            ......++.+++.++.+++.||+|+|+.+..+..+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~  276 (382)
T PRK10091        209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTF------------IMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIV  276 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHH
Confidence            2222233333344444554 47887775444            6777788889999999999999999999888877666


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcc-cceeeecccCchhhhhhhHHHHHHHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNS-TTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      ++.+++....                    +..+.......+.. .+..+..+ .......+..|.+.++.+  ..+...
T Consensus       277 i~~~~~~~~~--------------------~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  333 (382)
T PRK10091        277 LALLMLFFFG--------------------GMKTASLIFAFICC-AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAF  333 (382)
T ss_pred             HHHHHHHHHH--------------------hhHHHHHHHHHHHH-HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHH
Confidence            6554443221                    11112222111111 11112122 122233444555555544  346678


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .+|..+||.+.+.+.+... +|+..+.+.+++.++........
T Consensus       334 ~~g~~~Gp~~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        334 NLGSAIGAYCGGMMLTLGL-AYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHHHHHHhHHHHHccc-CcchHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999998643 78888888777766665555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.79  E-value=5.6e-17  Score=150.12  Aligned_cols=256  Identities=14%  Similarity=0.138  Sum_probs=155.6

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |...+++.|++|+++|+++.++...+.++|.++++.+++.+.                       +.++||+.|++.++.
T Consensus       127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~-----------------------~~~gw~~~f~~~~~l  183 (394)
T PRK10213        127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG-----------------------ELIGWRNVFNAAAVM  183 (394)
T ss_pred             HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhcCHHHHHHHHHHH
Confidence            566788999999999999999999999999999999999987                       667899999998776


Q ss_pred             HHHHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      +++..+. ...+||+|+.    +++..                            +..++.     +++  +.++.....
T Consensus       184 ~~~~~l~~~~~~p~~~~~----~~~~~----------------------------~~~~~~-----l~~--~~~~~~~~~  224 (394)
T PRK10213        184 GVLCIFWIIKSLPSLPGE----PSHQK----------------------------QNTFRL-----LQR--PGVMAGMIA  224 (394)
T ss_pred             HHHHHHHHHHHCCCCCcc----cccch----------------------------hHHHHH-----hcC--HHHHHHHHH
Confidence            6654433 3346775421    10000                            001111     111  122222222


Q ss_pred             HHHHHHHHHHHHHh-HhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLT-QKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .+......+....+ .|.+.++.|++....+.            ......++.+++.++.+++.||.+|+.. +.+..+.
T Consensus       225 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~------------~~~~~~~~~iig~~~~~~l~~r~~~~~l-~~~~~~~  291 (394)
T PRK10213        225 IFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTL------------VLLSFGIASFVGTSLSSFILKRSVKLAL-AGAPLVL  291 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHH
Confidence            23323333444444 47777778888775443            5666777888888999999999654433 3333332


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .++...+....                    .+.+... ...+..+++.....+...+++.+..|+ .++...++.....
T Consensus       292 ~~~~~~l~~~~--------------------~~~~~~~-~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  349 (394)
T PRK10213        292 AVSALVLTLWG--------------------SDKIVAT-GVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVI  349 (394)
T ss_pred             HHHHHHHHHHh--------------------hhHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence            33322222211                    1111222 222222222223333444456677774 4566677777888


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHH
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGF  357 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (402)
                      .+|..+|+.+.+.+.+..  ++...+...+++.++..
T Consensus       350 ~lg~~~G~~l~G~l~~~~--g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        350 QLANTCGAAIGGYALDNI--GLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHHHHHHHHHhcc--ChhhHHHHHHHHHHHHH
Confidence            899999999999999976  67676666655544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.77  E-value=2.9e-17  Score=156.79  Aligned_cols=272  Identities=10%  Similarity=0.007  Sum_probs=166.3

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |...+++.|++|+++|+++.+++..+..+|..+++.+++.+.                       +..+||+.|++.+++
T Consensus       109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~~w~~~f~~~~~~  165 (485)
T TIGR00711       109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII-----------------------ENYHWRWIFLINVPI  165 (485)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc-----------------------cCcCceehhhhhhHH
Confidence            456788999999999999999999999999999999999887                       678999999998877


Q ss_pred             HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHH--------HH-hhccccccccCC-------------------CCCCC
Q 042372           83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDM--------AK-VLDTDINVATSA-------------------YPAPV  133 (402)
Q Consensus        83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~-------------------~~~~~  133 (402)
                      +++..+ ..+++||+++.  . +++.+.....+        .. ....+.....++                   .+..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~--~-~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (485)
T TIGR00711       166 GIIVVVVAFFILPRDKPA--A-SENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTD  242 (485)
T ss_pred             HHHHHHHHHHHcCCcccc--c-cCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            665443 34456765431  1 11111110000        00 000000000000                   00000


Q ss_pred             CCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 042372          134 SPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFA  212 (402)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~  212 (402)
                      +++     ....+.+++  +.+.......+.....++....+.|.++++ .|+++.+.+.            ......++
T Consensus       243 ~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~------------~~~~~~~~  303 (485)
T TIGR00711       243 DNP-----LVDLRLFKY--RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGL------------HILPVGLA  303 (485)
T ss_pred             CCC-----ccCHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHH
Confidence            001     111112221  123333444445555666777788888876 7888776554            66777788


Q ss_pred             hcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCC
Q 042372          213 TVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGP  292 (402)
Q Consensus       213 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (402)
                      .+++.++.|++.||+|||+.+.++..+.+++...+.....   ..              ...........+ .+++....
T Consensus       304 ~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---~~--------------~~~~~~~~~~~l-~g~g~~~~  365 (485)
T TIGR00711       304 PMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---PD--------------TPFLAIALPQFI-RGFGMGCF  365 (485)
T ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---CC--------------CCHHHHHHHHHH-HHHHHHHH
Confidence            8889999999999999999988887766666555442111   11              111122222111 12211111


Q ss_pred             cccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372          293 NSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK  337 (402)
Q Consensus       293 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  337 (402)
                      .+.......+..|++.|+++.++.+....+|+.+|+.+.+.+.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       366 FMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222334456778999999999999999999999999999888764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.76  E-value=2.3e-17  Score=150.95  Aligned_cols=253  Identities=10%  Similarity=-0.000  Sum_probs=151.9

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|++|+++|+++.++...+..+|.++++.+++.+....+.+               ....++||..|++.++.
T Consensus       102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~---------------~~~~~~wr~~f~i~ai~  166 (356)
T TIGR00901       102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFAN---------------TGLITLWGYIFFWTALL  166 (356)
T ss_pred             HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---------------cccccccHHHHHHHHHH
Confidence            345678999999999999999999999999999999998887432211               12356799999998887


Q ss_pred             HHHHHHHHhh-cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTYYWRMK-MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~~~~~~-lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++.++..++ .||+++.    ++.+++..+..                         ++.++....++..+..+...+.
T Consensus       167 ~l~~~~~~~~~~~e~~~~----~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~  217 (356)
T TIGR00901       167 ILPGLLVTLFLAKEPQED----ASVPKPLTQAV-------------------------LKPIREFFQRKNMIQALLLLLL  217 (356)
T ss_pred             HHHHHHHHHHhccCCCcc----cccchhHHHHH-------------------------HHHHHHHHHhcCchHHHHHHHH
Confidence            7776655554 5775321    10000000000                         0011111111111123333334


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  241 (402)
                      .+.....++....+.|.++++.|++..+.+.           .......++.+++.++++++.||+|||+.+..+.++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~-----------~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~  286 (356)
T TIGR00901       218 IVLYKLGDSAATVLTTLFLLDMGFSKEEIAL-----------VAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA  286 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4444556667777888888888888776433           12223345667888899999999999998888877666


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK  321 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  321 (402)
                      +...++.+........+  .        . ....+......+...+......+...++..|.+|++.|++..|+.+...+
T Consensus       287 ~~~~~~~~~~~~~~~~~--~--------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       287 LTNAGFVWLASNGHHDG--I--------T-FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHhcCcccc--c--------c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            65544433211000000  0        0 01112222222222332333455677888999999999999999887653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.76  E-value=2.5e-16  Score=145.77  Aligned_cols=246  Identities=12%  Similarity=0.093  Sum_probs=151.2

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|++|+++|+++.++.+....+|.++++.+++.+.                       +..+||+.|++.++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~~~~~~~~~~~~~  168 (385)
T TIGR00710       112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL-----------------------VWLSWHAIFAFLSLA  168 (385)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHcCHHHHHHHHHHH
Confidence            445688999999999999999999999999999999999886                       557899999987776


Q ss_pred             HHHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++.. +..+++||+++.  .++++.++..+                             .++. ..++  +.++...+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------------------------~~~~-~~~~--~~~~~~~~~  214 (385)
T TIGR00710       169 GILLSALIFFILPETLPY--EARIQISTYFE-----------------------------TFLL-LLKS--KMFWGYALI  214 (385)
T ss_pred             HHHHHHHHHHhCCCCCCC--cccCCHHHHHH-----------------------------HHHH-HHcC--chhHHHHHH
Confidence            66543 344557776532  10111111000                             0011 1111  112222222


Q ss_pred             HHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .......++....+.|.+++ +.|+++.+.+.            ......++.+++.++.+++.||+|||+.+..+..+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~  282 (385)
T TIGR00710       215 YGASFGGFFAFFSGAPFVYIDIMGVSPSVFGL------------LFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILF  282 (385)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            33333344555666677765 47887765443            666677888889999999999999999888877666


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .++..++.......                 ..............+.+.....+....+..|..| +.|+++.++.+...
T Consensus       283 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  344 (385)
T TIGR00710       283 AVSAVLLEITAILG-----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLR  344 (385)
T ss_pred             HHHHHHHHHHHHhc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHH
Confidence            66555544332100                 0111222222222222222233455566678777 56899999998888


Q ss_pred             HHHHHHHHHhHHHHh
Q 042372          321 KAGAIVGAFGVQYYT  335 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~  335 (402)
                      ..++.+.+.+.+...
T Consensus       345 ~~~g~i~~~~~~~~~  359 (385)
T TIGR00710       345 LVLGAIVGYLVSLIH  359 (385)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            775555555555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.76  E-value=2.4e-16  Score=145.29  Aligned_cols=282  Identities=13%  Similarity=0.104  Sum_probs=172.3

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhcccCcccccccccccCCCCCcchhHHH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSG-----IFLHVYNAPAFNRNHVLSAQPQGDYLWRIVL   76 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f   76 (402)
                      ++.....+++|+|+++||+++++.....++|..+++.+...+..     .++..   .       +.....+..+||...
T Consensus       145 f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~---~-------~~~~~g~~~~~~~~~  214 (462)
T PRK15034        145 FASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN---G-------VPQADGSVMSLANAA  214 (462)
T ss_pred             HHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc---c-------ccccccchHHHHHHH
Confidence            45677889999999999999999976677777766665554331     11110   0       000001355699998


Q ss_pred             HHhhHHHHHHHHHHh-hcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHH
Q 042372           77 MFGAVPAALTYYWRM-KMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHL  155 (402)
Q Consensus        77 ~~~~i~~~~~~~~~~-~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (402)
                      ++-+++.++..++.+ ++++.|.    .+.+.++.                                 . ...|+  +..
T Consensus       215 ~~~~~~~iv~~i~~~~~~~~~~~----~~~~~~~~---------------------------------~-~vlk~--~~~  254 (462)
T PRK15034        215 WIWVPLLAIATIAAWSGMNDIAS----SRASIADQ---------------------------------L-PVLQR--LHL  254 (462)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccc----cccCHHHH---------------------------------H-HHhCC--Cch
Confidence            887777666544433 4444331    01111110                                 1 11111  135


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHH
Q 042372          156 LGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLG  235 (402)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~  235 (402)
                      +.+.+.+++....+.++..++|.+.++ .++....            .....+..+...+..+++|+++||+|+|+++.+
T Consensus       255 Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~------------l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~  321 (462)
T PRK15034        255 WLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNI------------LRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI  321 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHH------------HHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence            556666666666777778788888766 2222211            012333456677777899999999999999998


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch---------
Q 042372          236 GFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA---------  306 (402)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------  306 (402)
                      +++++.++......... ....              .+.......+..+....+.+ +...+-++...+|+         
T Consensus       322 ~~i~~~i~~~~~~l~lp-~~~~--------------~~~~~~~~~~~~l~~~~G~g-ngsvfk~ip~~f~~~~~~~~~~~  385 (462)
T PRK15034        322 NFIFMAIFSALLFLTLP-GTGS--------------GNFIAFYAVFMGLFLTAGLG-SGSTFQMIAVIFRQITIYRVKMK  385 (462)
T ss_pred             HHHHHHHHHHHHHHHhc-cccc--------------cHHHHHHHHHHHHHHHhccc-chHHHHhhHHHHhhhhhhccccc
Confidence            88766666544333211 0000              12222222222222222233 23455566777774         


Q ss_pred             ------------hhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          307 ------------RLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       307 ------------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                                  +.-|.+.|+....+.+|+++.|.+++...+..+ ++...|+.+.+..+++.++.++.
T Consensus       386 ~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        386 GGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-SPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             ccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence                        146788999999999999999999999888776 68888999999999988888754

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.75  E-value=1.1e-16  Score=152.66  Aligned_cols=274  Identities=13%  Similarity=0.055  Sum_probs=165.0

Q ss_pred             hhHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372            5 SAVIMSEYA-NKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA   83 (402)
Q Consensus         5 ~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~   83 (402)
                      ....+.+.+ |+++|+++++++.....+|.+++|.+++.+.                       +..+||+.|++....+
T Consensus       115 ~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~-----------------------~~~gwr~~f~i~~~~~  171 (495)
T PRK14995        115 TLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL-----------------------EHFYWGSVFLINVPIV  171 (495)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------ccCChHHHHHHHHHHH
Confidence            344555654 7899999999999999999999999999997                       6789999999987666


Q ss_pred             HHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHH------Hhhcc-ccccccCCCCC---------------CCCCCcccc
Q 042372           84 ALT-YYWRMKMPETARYTALVEGNQKKAAVDMA------KVLDT-DINVATSAYPA---------------PVSPEASTY  140 (402)
Q Consensus        84 ~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~---------------~~~~~~~~~  140 (402)
                      ++. ++..+++||+|..   ++++.+.......      ..... +..........               ...+.+...
T Consensus       172 ~~~~~l~~~~l~~~~~~---~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~  248 (495)
T PRK14995        172 LVVMGLTARYVPRQAGR---RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASR  248 (495)
T ss_pred             HHHHHHHHHhCCCCCCC---CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            654 3445567886532   1111111000000      00000 00000000000               000000000


Q ss_pred             cchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchh
Q 042372          141 GLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWF  219 (402)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~  219 (402)
                      ..+..+.+++  +.+.......+.....+++...+.|.++++ .|+++.+.+.            ......++..++.++
T Consensus       249 p~~~~~lf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~------------~~~~~~~~~~~~~~~  314 (495)
T PRK14995        249 PMIDMRLFTH--RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGM------------FMLPVMVASGFSGPI  314 (495)
T ss_pred             CCcCHHHhCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHH
Confidence            1111122222  133334444444455566777788888876 7888886655            777778888889999


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceee
Q 042372          220 TVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIV  299 (402)
Q Consensus       220 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (402)
                      .|++.||+|+|+.+..+.++.+++.+.+.....   .               .+.+... ...+..+++.....+.....
T Consensus       315 ~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~---~---------------~~~~~~~-~~~~l~G~g~g~~~~~~~~~  375 (495)
T PRK14995        315 AGILVSRLGLRLVATGGMALSALSFYGLAMTDF---S---------------TQQWQAW-GLMALLGFSAASALLASTSA  375 (495)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC---C---------------CchHHHH-HHHHHHHHhHHHHHHHHHHH
Confidence            999999999999888887766666554443211   1               1111222 22222222222223344556


Q ss_pred             ecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372          300 PAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK  337 (402)
Q Consensus       300 ~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  337 (402)
                      ..+..|++.++.+.++.++...+|+.+|+.+.+.+.+.
T Consensus       376 ~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        376 IMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999998887653

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.75  E-value=4.9e-16  Score=144.16  Aligned_cols=250  Identities=13%  Similarity=0.086  Sum_probs=141.4

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|++|+++|++..++.+....+|.++++.+++.+.                       +..+||+.|++.++.
T Consensus       110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~-----------------------~~~g~~~~~~~~~~~  166 (392)
T PRK10473        110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM-----------------------LKFPWQSLFYTMAAM  166 (392)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hCcChHHHHHHHHHH
Confidence            346678999999999999999999999999999999988876                       567899999998776


Q ss_pred             HHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++. ++..+++||++..  . ++++...                         .+..++.++++       .++.....
T Consensus       167 ~~i~~~~~~~~~~~~~~~--~-~~~~~~~-------------------------~~~~~~~~~~~-------~~~~~~~~  211 (392)
T PRK10473        167 GILVLLLSLFILKETRPA--R-APAASSK-------------------------PRENSESLLNR-------FFLSRLVI  211 (392)
T ss_pred             HHHHHHHHHHHcCCCCCc--c-cCCccch-------------------------HHHHHHHHhCH-------HHHHHHHH
Confidence            6654 3445567876421  0 1100000                         00001111111       11111111


Q ss_pred             HHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .............+.|.++. +.|+++.+.+.            ......++.+++.++.+++.||+|||+.+.++..+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~  279 (392)
T PRK10473        212 TTLSVTVILTFVNTSPVLLMEQMGFSRGEYAI------------IMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF  279 (392)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            11111112223334455554 46877665433            556667777888889999999999999988887766


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .++.+.+....                     ..........+...+...+.. .  ....+..|.+.|+   +......
T Consensus       280 ~~~~~~~~~~~---------------------~~~~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~  332 (392)
T PRK10473        280 LAAGITLALSP---------------------SHAVSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTL  332 (392)
T ss_pred             HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHH
Confidence            66655554431                     111111111111111111111 1  1224455654443   4444555


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHH
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAV  351 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~  351 (402)
                      .++..+++.+.+++.+..  ++.....+.+.
T Consensus       333 ~~~~~~g~~~~~~l~~~~--g~~~~~~~~~~  361 (392)
T PRK10473        333 GIAQVCGSSLWIWLAAVL--GISAWNMLIGI  361 (392)
T ss_pred             HHHHHHHHHHHHHHHHHh--ccchhHHHHHH
Confidence            567777777777777765  54443344333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.75  E-value=1.8e-16  Score=146.39  Aligned_cols=263  Identities=11%  Similarity=0.033  Sum_probs=167.0

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |.+.++..|+  +++|++..+....+.++|.++++.+++.+.                       +.+|||..|++.++.
T Consensus       113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~-----------------------~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI-----------------------GMFDEQNILAILTAG  167 (382)
T ss_pred             hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH-----------------------HHcChhHHHHHHHHH
Confidence            4445555554  578899999999999999999999999987                       667899999886554


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      .++.++. +.++|+++.  . ++++++                  +    .++.+...+     ..|+  +.++......
T Consensus       168 ~~~~~~~-~~~~~~~~~--~-~~~~~~------------------~----~~~~~~~~~-----~l~~--~~~~~~l~~~  214 (382)
T TIGR00902       168 LAFMLIG-FLIKPTIPP--K-DAIPED------------------E----SQGDSAFIA-----LLKN--PMNLRFLAAV  214 (382)
T ss_pred             HHHHHHH-HHcCCCCCC--C-cccccc------------------c----cccchhHHH-----HHcC--hHHHHHHHHH
Confidence            3333333 334443210  0 000000                  0    000011111     1121  1233333333


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI  242 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  242 (402)
                      ++..........+.|.++++.|.+....+.            ......++.+++..+.+++.||+|+|+.+.++.+...+
T Consensus       215 ~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~------------l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       215 CLIQGAHAAYYGFSAIYWQAAGISASATGL------------LWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVG  282 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHhHHHH------------HHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHH
Confidence            434444555566778888889988876544            56678888888888999999999999999988888777


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH-HHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA-AGK  321 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~  321 (402)
                      ..+.+...                     ++.+...... .+-+.......+....++.+. |++.|+++.++++. ...
T Consensus       283 ~~~~~~~~---------------------~~~~~~~~~q-~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g  339 (382)
T TIGR00902       283 RWAIIGAI---------------------EAFPLIFLLQ-ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMG  339 (382)
T ss_pred             HHHHHHhH---------------------hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHH
Confidence            77666543                     2222222222 222221222233455667777 99999999999864 566


Q ss_pred             HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372          322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (402)
                      +|..+++.+.|.+.+..  ++ ..|++.+++.+++.++..
T Consensus       340 ~g~~~g~~~~G~l~~~~--g~-~~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       340 GLIAIFTAFAGFIYPTL--GA-GTFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             HHHHHHHHHHHHHHHhc--cH-HHHHHHHHHHHHHHHHHH
Confidence            88999999999999987  54 667777777776655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.75  E-value=6.6e-16  Score=143.97  Aligned_cols=250  Identities=12%  Similarity=0.049  Sum_probs=150.2

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|++|+++|++..++......+|..+++.+++.+.                       +..+||+.|++.++.
T Consensus       120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-----------------------~~~~w~~~~~~~~~~  176 (406)
T PRK15402        120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI-----------------------HVLPWRGMFVLFAAL  176 (406)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HccCccHHHHHHHHH
Confidence            455678899999999999999988888899999999998886                       556899999987777


Q ss_pred             HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++..+ ..+.+||+++.  . +++ .+. +...                         +.++ ...++  +.++.....
T Consensus       177 ~~~~~~~~~~~~~~~~~~--~-~~~-~~~-~~~~-------------------------~~~~-~~~~~--~~~~~~~~~  223 (406)
T PRK15402        177 AALSFFGLWRAMPETAGR--V-GEK-LSL-KELG-------------------------RDYK-LVLKN--RRFVAGALA  223 (406)
T ss_pred             HHHHHHHHHHhCCCCCcc--c-ccc-ccH-HHHH-------------------------HHHH-HHHcC--cHHHHHHHH
Confidence            665444 34557876532  1 110 000 0000                         0001 11111  122222222


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .+......+....+.|.++.+ .|+++.+.+.            ......++.+++.++.++++||+++|+.+.++.+..
T Consensus       224 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~------------~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~  291 (406)
T PRK15402        224 LGLVSLPLLAWIALSPVILISGEQLSSYEYGL------------LQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM  291 (406)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            223333334444556766544 7777665433            344445667778889999999999999988887766


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .++.+.+........                ....+......+. +.+.....+....... ..+++.|++..++.+...
T Consensus       292 ~~g~~~~~~~~~~~~----------------~~~~~~~~~~~~~-g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~  353 (406)
T PRK15402        292 VAGLLLAALATVISS----------------HAYLWLTAGLSLY-AFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLS  353 (406)
T ss_pred             HHHHHHHHHHHHccc----------------ccHHHHHHHHHHH-HHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHH
Confidence            666555544321100                1112222212222 1111111222222222 234478999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhc
Q 042372          321 KAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~  338 (402)
                      .++..+|+.+.+.+.+..
T Consensus       354 ~~~~~~g~~~~~~l~~~~  371 (406)
T PRK15402        354 MLIFTVGIELSKHAYLGG  371 (406)
T ss_pred             HHHHHHHHHHHHhcccCC
Confidence            999999999999988765

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.75  E-value=7.7e-16  Score=142.51  Aligned_cols=270  Identities=11%  Similarity=-0.001  Sum_probs=158.5

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      +|+..+++.|++|+++|+++.++.+....+|.++||.+++.+.                       + +.|+..+.+.+.
T Consensus       106 ~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~-----------------------~-~~~~~~~~i~~~  161 (393)
T PRK11195        106 SPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA-----------------------D-PHAEAALAVCAL  161 (393)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------H-HHHHHHHHHHHH
Confidence            4677899999999999999999999999999999999999987                       2 237777777665


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      ..++..+..+.+||+|+.  .++++.+. .+......                  ...+..++++..+   ...+...+.
T Consensus       162 ~~~~~~~~~~~l~~~~~~--~~~~~~~~-~~~~~~~~------------------~~~~~l~~~~~~~---~~~~~~~~~  217 (393)
T PRK11195        162 IYLLAALFNLFIPRLGAR--RPGQSWNP-IALLRDFF------------------HACRVLWRDKLGR---FSLAGTTLF  217 (393)
T ss_pred             HHHHHHHHHhcCCCCccc--ccccCCCH-HHHHHHHH------------------HHHHHHHhCchhH---HHHHHHHHH
Confidence            555555556678887643  11111110 00000000                  0000111111111   111111111


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      +.    .........+.+.++ +|.++.+.+.            ......++.++++++.+++.||.++|+.+..+.. .
T Consensus       218 ~~----~~~~~~~~~~~~~~~~lg~s~~~~G~------------~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~  280 (393)
T PRK11195        218 WG----AGATLRFLVLAWAPVALGITLNQPAY------------LQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-M  280 (393)
T ss_pred             HH----HHHHHHHHHHHHHHHHcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-H
Confidence            11    122223333444443 6777775544            7777888889999999999999998887776643 2


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh-hhhhHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL-RSTCHGISAAA  319 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~  319 (402)
                      ++....+...                     .+.+.......+.+.+ .....+...+...+..|++. +|++.++.+..
T Consensus       281 ~~~~~~~~~~---------------------~~~~~~~~~~~~~G~~-~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~  338 (393)
T PRK11195        281 GLVVLLMALQ---------------------HSLLPAYPLLILIGAL-GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFN  338 (393)
T ss_pred             HHHHHHHHHH---------------------hHHHHHHHHHHHHHHh-hhhhhhhHHHHHHhhCcccccchhHHHHHhHH
Confidence            3322222221                     2222222222222222 22222334455567766654 79999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (402)
                      .+++..++..+.+.+...   +.+..+.+.+...++++.+.+
T Consensus       339 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        339 ENLAMLLMLGLYSLLVKL---GVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             HHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999888866443   667777766665555555544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.74  E-value=4.8e-16  Score=144.05  Aligned_cols=265  Identities=12%  Similarity=0.007  Sum_probs=156.4

Q ss_pred             HhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHHH
Q 042372            8 IMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTY   87 (402)
Q Consensus         8 ~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~~   87 (402)
                      +..|..++++++.+.+....+..+|.++++...+.+.                       +..|||..|++.++..++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~-----------------------~~~gw~~~f~~~a~l~~~~~  177 (390)
T TIGR02718       121 MAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF-----------------------GKFGQRPAFLLVACVPLASL  177 (390)
T ss_pred             HHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhCHHHHHHHHHHHHHHHH
Confidence            4567777777788888888888889998888887776                       66789999999888776655


Q ss_pred             HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHH
Q 042372           88 YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDI  167 (402)
Q Consensus        88 ~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (402)
                      +..++++|+++.  . ++++++.                         ..+.++.+++    +.   .+......++...
T Consensus       178 ~~~~~~~~~~~~--~-~~~~~~~-------------------------~~~~~~~l~~----~~---~~~~~~~~~l~~~  222 (390)
T TIGR02718       178 VCVLWLKDRAVA--S-PEAPLAR-------------------------RASLFRFFRR----PL---AWSLLALALLSAM  222 (390)
T ss_pred             HHHHHcCCCCcC--c-cccchhh-------------------------HHHHHHHHcC----cC---HHHHHHHHHHHHH
Confidence            554555443210  0 1100000                         0011111111    11   1112222222223


Q ss_pred             HHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHH-HhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH
Q 042372          168 AFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVA-LFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI  246 (402)
Q Consensus       168 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  246 (402)
                      .......+.+.++.+.|+++.+.+.            ..... .+..+++.++.|++.||+|+|+.+..+..+..+....
T Consensus       223 ~~~~~~~~~~~~l~~~G~s~~~ig~------------~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~  290 (390)
T TIGR02718       223 TAVSGFGLSKLYLVDAGWPLEWIGR------------LGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALL  290 (390)
T ss_pred             HHHHHHHHhhHHHHhcCCCHHHHHH------------HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3334444567777888998886443            33333 3456677788999999999999988776654333222


Q ss_pred             HHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch-hhhhhhHHHHHHHHHHHHH
Q 042372          247 LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA-RLRSTCHGISAAAGKAGAI  325 (402)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~  325 (402)
                      ..........               ... ...........+......+.......+..++ +.+++..++.+....+|..
T Consensus       291 ~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~  354 (390)
T TIGR02718       291 WFAQAAFWLA---------------PGI-AVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL  354 (390)
T ss_pred             HHHHHHcccC---------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH
Confidence            2111110000               111 1111111111111111122333444555555 8899999999999999999


Q ss_pred             HHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372          326 VGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS  360 (402)
Q Consensus       326 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (402)
                      ++|.+.+.+.+..  +++..|.+.+++.+++.++.
T Consensus       355 ~g~~~~G~l~~~~--G~~~~f~~~~~~~l~a~~~~  387 (390)
T TIGR02718       355 IASSIAGYLTDRF--GYAGGFLSGTVLAVLAILLA  387 (390)
T ss_pred             HHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHh
Confidence            9999999999987  88888888777777665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.74  E-value=9.4e-16  Score=141.52  Aligned_cols=243  Identities=15%  Similarity=0.098  Sum_probs=140.5

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|++|+++|++++++.+.+..+|..+++.+++.+.                       +..+||+.|++.++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~~~~~~~~~~~~  154 (377)
T PRK11102         98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL-----------------------VWFSWHAIFWVLALA  154 (377)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHcChHHHHHHHHHH
Confidence            345678999999999999999999999999999999998887                       556899999987777


Q ss_pred             HHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++. ++..+++||+++.  . ++++.+..                          ...+.++. ..++  +..+.....
T Consensus       155 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~--------------------------~~~~~~~~-~~~~--~~~~~~~~~  202 (377)
T PRK11102        155 AILAAALVFFFIPETLPK--E-RRQPFHLR--------------------------TTIRNFAS-LFRH--KRVLGYMLA  202 (377)
T ss_pred             HHHHHHHHHHhCCccCcc--c-ccCCCChH--------------------------HHHHHHHH-HHcC--hHHHHHHHH
Confidence            6664 3445567876421  0 00000000                          00000011 1111  112222222


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .+......+....+.|.++.+ .|+++.+.+.            ......++.+++.++.+++.||+|||+.+..+..+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~  270 (377)
T PRK11102        203 SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGY------------YFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQ  270 (377)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            233333344444555655544 7888775444            666777888888999999999999999988877654


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .+..+.+......  +               ...+...+........ .....+....+..|..| +.|+++.++.+...
T Consensus       271 ~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  331 (377)
T PRK11102        271 FIMGIWLVVSALL--D---------------LGFWALVVGVAAFVGC-VSMISSNAMAVILDEFP-HMAGTASSLAGTLR  331 (377)
T ss_pred             HHHHHHHHHHHHH--h---------------hhHHHHHHHHHHHHHH-HHHhhHHHHHHHhcccc-ccchHHHHHHHHHH
Confidence            4433322221100  0               1111122212122111 11122233345567776 78899988877664


Q ss_pred             H-HHHHHHHHhH
Q 042372          321 K-AGAIVGAFGV  331 (402)
Q Consensus       321 ~-~g~~i~~~~~  331 (402)
                      . ++..+++.+.
T Consensus       332 ~~~g~~~g~~~~  343 (377)
T PRK11102        332 FGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHHHHHHH
Confidence            3 4455555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.74  E-value=2.6e-16  Score=148.18  Aligned_cols=251  Identities=17%  Similarity=0.132  Sum_probs=148.1

Q ss_pred             hHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            6 AVIMSEYA-NKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         6 ~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      .++..|.. ++++|++..++.+.+..+|.++++.+.+.+.....+                .....+||+.+++.+++++
T Consensus       121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~----------------~~~~~g~~~~~~i~~~l~~  184 (437)
T TIGR00792       121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG----------------GDDKFGWFMFALVLALIGV  184 (437)
T ss_pred             hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CcccccHHHHHHHHHHHHH
Confidence            35567777 578999999999999999988888777666533221                1145689999998887776


Q ss_pred             HHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           85 LTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        85 ~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      +..+ ..+++||.++.    .+.++                         +++.+.++.++.. +++  +.++......+
T Consensus       185 ~~~~~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~l-~~~--~~~~~~~~~~~  232 (437)
T TIGR00792       185 VSLIICFFGTKERYSE----IPKNI-------------------------EKKLSLKQIFKAL-FKN--DQLLILCLAYL  232 (437)
T ss_pred             HHHHHHHcCCEecCCC----CCccc-------------------------ccCCCHHHHHHHH-hCC--HHHHHHHHHHH
Confidence            6544 44557775421    00000                         0011111122211 111  12233333333


Q ss_pred             HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372          164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI  242 (402)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  242 (402)
                      ......+....+.+.+.+. .+ ++..            .+.......++.+++.++.++++||+|||+.+..+..+.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       233 FYNLAFNIKNGVQVYYFTYVLG-DPEL------------FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHcchhheeEeeecC-ChHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3333444444444555543 22 2222            11244455778888888999999999999999888776666


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-------hhhhhhhHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-------ARLRSTCHGI  315 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~  315 (402)
                      +.+.+.+..                    .+.+.. .+.....+++.....+..+++.+|..+       ++.+|...|+
T Consensus       300 ~~~~~~~~~--------------------~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  358 (437)
T TIGR00792       300 GYLIFFFAG--------------------SNLPLI-LVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV  358 (437)
T ss_pred             HHHHHHHcc--------------------hhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence            655443321                    111122 222222222222334456666677654       5567999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhc
Q 042372          316 SAAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       316 ~~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      .+....+|..+++.+.+.+.+..
T Consensus       359 ~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       359 RTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999998765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.73  E-value=3.5e-17  Score=149.46  Aligned_cols=246  Identities=19%  Similarity=0.218  Sum_probs=153.0

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|++|+++|++++++...+..+|.++++.+++.+.                       +..+||+.|++.++.
T Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-----------------------~~~~~~~~~~~~~~~  160 (352)
T PF07690_consen  104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI-----------------------SYFGWRWAFLISAIL  160 (352)
T ss_dssp             HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------CHCHHCCHHHHHHHH
T ss_pred             ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh-----------------------hccccccccccccch
Confidence            456789999999999999999999999999999999999886                       677899999998888


Q ss_pred             HHHHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++..++ .++++++|+....+++++++                       ++++++..+.++....++   .++.....
T Consensus       161 ~~~~~il~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~  214 (352)
T PF07690_consen  161 SLIAAILFILFLPEPPPPRERESPKESE-----------------------SKKPKPLKPGFKSLFKNP---VLWILLIA  214 (352)
T ss_dssp             HHHHHHHHHCCC---STTTT--SSTTTT-------------------------HHHCCCH-CTHHHHHH---CCHHHHHH
T ss_pred             hhhhhhhHhhhhhhcccccccccccccc-----------------------cccccccccccccccccc---hhhhhhhh
Confidence            7776553 34566554321111111100                       000001111111111111   11122233


Q ss_pred             HHHHHHHHHHHHHhHhhh-hhhcCCc-hhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDI-YPATGIV-RKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      .+.....++....+.|.+ .+.+|++ ..+.+.            ...+..+..+++.++.+++.||+++|+........
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (352)
T PF07690_consen  215 FFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGL------------LFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILL  282 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhcccchhhhhccCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            333334555677778887 4457777 454332            56677777777888999999999987777666554


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ..+..+.+......                  .+.........+ .+.+.....+....+..|.+|++.|+++.|+.+..
T Consensus       283 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  343 (352)
T PF07690_consen  283 LILGALGLLLLPFS------------------SSPVWLIIALFL-IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSI  343 (352)
T ss_dssp             HHHHHHHHCCSHHH------------------CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh------------------hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            44444433322110                  111222222222 22233334567778889999999999999999999


Q ss_pred             HHHHHHHHH
Q 042372          320 GKAGAIVGA  328 (402)
Q Consensus       320 ~~~g~~i~~  328 (402)
                      ..++..++|
T Consensus       344 ~~~~~~igP  352 (352)
T PF07690_consen  344 GSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHCC
Confidence            999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=99.73  E-value=1.8e-15  Score=140.80  Aligned_cols=243  Identities=9%  Similarity=0.058  Sum_probs=149.4

Q ss_pred             hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      ..+++.|++|+++|++..+.......+|.++++.+++.+.                       +..+||+.|++.++..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-----------------------~~~g~~~~~~~~~~~~~  171 (401)
T PRK11043        115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL-----------------------NHFGWQAIFATLFAITL  171 (401)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hcCChHHHHHHHHHHHH
Confidence            3467899999999999999988889999999999999887                       66789999998887777


Q ss_pred             HHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372           85 LTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL  164 (402)
Q Consensus        85 ~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (402)
                      +..+..++++|+++.    +++ ++.                         +.+.++.++++       ..+........
T Consensus       172 ~~~~~~~~~~~~~~~----~~~-~~~-------------------------~~~~~~~~~~~-------~~~~~~~~~~~  214 (401)
T PRK11043        172 LLILPTLRLKPSKKA----RKQ-SQD-------------------------ALTFKQLLKSK-------TYLGNVLIFAA  214 (401)
T ss_pred             HHHHHHHHcCCCCCc----ccc-chH-------------------------HHHHHHHHcCh-------hHHHHHHHHHH
Confidence            665555566665421    110 000                         00111111111       11111122222


Q ss_pred             HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372          165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM  244 (402)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  244 (402)
                      ....++....+.|.+.++.|++....+.            ......++.++|.++.+++.||+++|+.+.....+.+++.
T Consensus       215 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~------------~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~  282 (401)
T PRK11043        215 CSAAFFAWLTGSPFILEQMGYSPADIGL------------SYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSV  282 (401)
T ss_pred             HHHHHHHHHHHhHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            2334445556778888888888775443            4455566777788888999999999987665555444443


Q ss_pred             HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372          245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA  324 (402)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  324 (402)
                      +.+........                ...+..... ....+.......+.......+..| +.|+++.|+.+..+..++
T Consensus       283 ~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~  344 (401)
T PRK11043        283 IAIWLASLLSH----------------PSLVPLLIP-FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLC  344 (401)
T ss_pred             HHHHHHHHhcc----------------CcHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHH
Confidence            33222211000                111222221 222222233334445555556666 579999999999988888


Q ss_pred             HHHHHhHHHHhhh
Q 042372          325 IVGAFGVQYYTQK  337 (402)
Q Consensus       325 ~i~~~~~~~~~~~  337 (402)
                      ..++.+.+.+.+.
T Consensus       345 ~~~~~~~g~l~~~  357 (401)
T PRK11043        345 FLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHccCC
Confidence            8888888888663

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.72  E-value=3.5e-16  Score=164.12  Aligned_cols=286  Identities=15%  Similarity=0.013  Sum_probs=170.9

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      .|+..+++.|++|+++|++++++.+++..+|.++|+++++++.                       ...+|++.|++.++
T Consensus       126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~-----------------------~~~~~~~~~~~~~~  182 (1140)
T PRK06814        126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT-----------------------ISGNFVILVALLMG  182 (1140)
T ss_pred             chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH-----------------------hccccHHHHHHHHH
Confidence            4678899999999999999999999999999999999999998                       66789999966666


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .+++.+++.+++|+++.-  . .+.+.+. ...                      ....+.++.. .++  +.++...+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~-~~~----------------------~~~~~~~~~~-~~~--~~~~~~~~~  233 (1140)
T PRK06814        183 IAVLGWLASLFIPKTGNA--A-PDLKIDR-NII----------------------RSTITLLKYA-KAD--KRIWLAILG  233 (1140)
T ss_pred             HHHHHHHHHhhCCCCCCC--C-CCCeecc-chH----------------------HHHHHHHHHH-hcC--chHHHHHHH
Confidence            666666666777776421  0 1100000 000                      0000011111 111  133333333


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .+...+.......++|.++++ +|.+....+.            +.+...++.++|.++.|+++|+.++++.+..+.++.
T Consensus       234 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~------------~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~  301 (1140)
T PRK06814        234 ISWFWLVGAVVLSQLPLLAKETLGGDENVATL------------FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLM  301 (1140)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH------------HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHH
Confidence            333344445566678888876 6777765444            777788888999999999998887766655555544


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      +++.+.+.+......... ..-.-........+.+. +.+..++.+++.....+...+++.+..|++.||+++|+.+++.
T Consensus       302 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~  379 (1140)
T PRK06814        302 GLFGLDLAFASSSVPAEP-AQLKSILVFLSKRHGWR-ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLN  379 (1140)
T ss_pred             HHHHHHHHhccccccccc-ccccchhhhhcccccHH-HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHH
Confidence            444433333100000000 00000000000011112 2222222233333334456678899999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHH
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNF  354 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (402)
                      .++..+++.+.+.+.+... ++...+++.+++.+
T Consensus       380 ~~~~~ig~~~~g~l~~~~~-~~~~~~~~~~~~~~  412 (1140)
T PRK06814        380 AAFMVAGTIILALLQALGF-SIPWIILFIALANL  412 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence            9999999999888875322 44555554444333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.72  E-value=2.4e-15  Score=138.86  Aligned_cols=153  Identities=14%  Similarity=0.073  Sum_probs=105.8

Q ss_pred             HHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372          171 TINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR  250 (402)
Q Consensus       171 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  250 (402)
                      ....+.|.+.++.|.+....+.            ......++.+++.+..|++.||+|+|+.+..+.....++...+. .
T Consensus       218 ~~~~~lp~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~  284 (381)
T PRK03633        218 SLYGLMPLYLNHQGMSDASIGF------------WMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S  284 (381)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h
Confidence            3445678888888887765433            56666778888888999999999999988877666555443322 1


Q ss_pred             hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHh
Q 042372          251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFG  330 (402)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~  330 (402)
                                           ..  ....... ..+.......+...++..|..|++.++...+..+....+|.+++|.+
T Consensus       285 ---------------------~~--~~~~~~~-l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~  340 (381)
T PRK03633        285 ---------------------QA--AMAPALF-ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSF  340 (381)
T ss_pred             ---------------------hH--HHHHHHH-HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 01  1111111 11222233456666777898988888888888888889999999999


Q ss_pred             HHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372          331 VQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      .+++.+..  ++...|.+.+.+.++..+..+.
T Consensus       341 ~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        341 TAMLMQNY--SDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHh--CccHHHHHHHHHHHHHHHHHHh
Confidence            99999887  7888888877777766554443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.72  E-value=6.2e-16  Score=162.73  Aligned_cols=279  Identities=10%  Similarity=-0.044  Sum_probs=161.3

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh-h
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG-A   80 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~-~   80 (402)
                      .|+..+++.|++|+++|++++++.+.+..+|.++++.+++++.......              +.....+|++.+.+. .
T Consensus       121 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~  186 (1146)
T PRK08633        121 SPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGN--------------TPSEILGRIAPAGLVLL  186 (1146)
T ss_pred             chHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cccccccchHHHHHHHH
Confidence            3566789999999999999999999999999999999999887321100              000122344444443 3


Q ss_pred             HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      +.+++.+++.+++||+|....  .+.+.+..                      .......+.++. .+++  +.++...+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~-l~~~--~~~~~~~~  239 (1146)
T PRK08633        187 AVAVLGLIFAYRLPKVPAAAP--EVFDKKKY----------------------LFPKLLWRNLKL-LRSD--RVLWLAII  239 (1146)
T ss_pred             HHHHHHHHHHhcCcCCCCCCc--cccccccc----------------------ccHHHHHHHHHH-HhcC--cHHHHHHH
Confidence            334445555666888875411  11000000                      000000001111 1111  12222222


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchh-hhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRK-AAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  238 (402)
                      ..++.....+....+.|.++.+ +|++.. ..+.            +.....++.+++.++.+++.||+++++.+.++.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~------------~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~  307 (1146)
T PRK08633        240 GLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQY------------LLAASAIGIGIGSLLAGRLSGRHIELGLVPLGAL  307 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHH------------HHHHHHHHHHHHHHHHHHHhCCceEccchhHHHH
Confidence            2222223333444556666654 777766 4433            6666778888899999999999999988887777


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      +.+++.+++...                     .+. ...++..++.+++.....+...+++.+..|++.|++++|+.++
T Consensus       308 ~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~  365 (1146)
T PRK08633        308 GLALSLFLLPTA---------------------PSL-ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF  365 (1146)
T ss_pred             HHHHHHHHHHHh---------------------hhH-HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence            666665555442                     111 2222222222222333334556777899999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHH
Q 042372          319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLG  356 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (402)
                      +..++.++++.+.+.+... +.++...+++.+.+.++.
T Consensus       366 ~~~lg~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        366 LQNVGMLLFLALTTLFSGL-GLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHH
Confidence            9999988887776665442 113444455544444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.72  E-value=7.7e-16  Score=143.49  Aligned_cols=176  Identities=11%  Similarity=0.024  Sum_probs=113.6

Q ss_pred             HHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372          171 TINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR  250 (402)
Q Consensus       171 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  250 (402)
                      ....+.+.+.++.|.++....    .......+....+..+..+++.+..|+++||+|||+++.++.++.++...++...
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~----~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~  301 (418)
T TIGR00889       226 ITNIFGNGFLHEFGRNPEFAD----SFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG  301 (418)
T ss_pred             HHHHhHHHHHHHhcccccccc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            344555777777665542110    0000123336666777888888899999999999999999887777665554442


Q ss_pred             hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH-HHHHHHHHHHHH
Q 042372          251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA-AAGKAGAIVGAF  329 (402)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~i~~~  329 (402)
                      ..    .              .......++..+..+.+.....+....++.|.+|++.|+++.|+.+ ....+|.+++|.
T Consensus       302 ~~----~--------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~  363 (418)
T TIGR00889       302 DP----E--------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYI  363 (418)
T ss_pred             Cc----c--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            10    0              1011112222222222222223455567899999999999999997 567889999999


Q ss_pred             hHHHHhhhcC----CCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372          330 GVQYYTQKGD----KQIKQSIIALAVVNFLGFLCSFM-VPETNG  368 (402)
Q Consensus       330 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-l~et~~  368 (402)
                      +.+.+.+..+    .+|+..|.+.+++.+++.++.++ ++|+++
T Consensus       364 l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       364 LSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            9999998753    15888898888887777666664 476643

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.71  E-value=8.7e-16  Score=141.86  Aligned_cols=262  Identities=10%  Similarity=0.052  Sum_probs=154.5

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |...+++.++  .++|++..+.......+|.+++|.+++.+.                       +.+|||..|++.++.
T Consensus       113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~-----------------------~~~g~~~~f~~~~~~  167 (382)
T PRK11128        113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV-----------------------SWFGEQAILWILTAG  167 (382)
T ss_pred             cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH-----------------------HHcChhHHHHHHHHH
Confidence            4444566665  456888888888888999999999999997                       667899999887765


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      .++..+..++.||.++.     +++++.                     .++...+.++.     +|+  +.++......
T Consensus       168 ~~~~~~~~~~~~~~~~~-----~~~~~~---------------------~~~~~~~~~~i-----~~~--~~~~~~~~~~  214 (382)
T PRK11128        168 VASMLLGQLLRPTIMPQ-----GESRQQ---------------------ESAGWPAWKAL-----LKE--PTVWRFLLCV  214 (382)
T ss_pred             HHHHHHHHHccCCCCCc-----cccccc---------------------cccccchHHHH-----HcC--hhHHHHHHHH
Confidence            55444444445553211     000000                     00001111111     111  1233333333


Q ss_pred             HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI  242 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  242 (402)
                      +.....+.....+.|.+.++.|.+....+.            ......++.++..++.+++.||+|+|+.+..+.+..++
T Consensus       215 ~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~  282 (382)
T PRK11128        215 SLLQGSHAAYYGFSAIYWQAAGYSASTIGY------------LWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVV  282 (382)
T ss_pred             HHHHHHhHhHHHHHHHHHHHCCCCHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            333333444555667777778888765443            45566677788888999999999999998888777666


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH-HH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA-GK  321 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~  321 (402)
                      ..+.+...                     ++.+..++ ..++.+.......+....+..+. +++.+++..++.+.. ..
T Consensus       283 ~~~~~~~~---------------------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  339 (382)
T PRK11128        283 RWGLMGST---------------------TALPWLIV-IQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMG  339 (382)
T ss_pred             HHHHHHhh---------------------hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHH
Confidence            65544332                     22222222 22222221111233444555665 555568888877644 45


Q ss_pred             HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372          322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS  360 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (402)
                      +|..++|.+.|.+.+..  ++ ..++..+++.+++.++.
T Consensus       340 ~g~~ig~~i~G~l~~~~--g~-~~~~~~~~~~~~~~~~~  375 (382)
T PRK11128        340 GSIAIMTVLSGFLYQHL--GA-GVFWVMALVALPALFIR  375 (382)
T ss_pred             HHHHHHHHHHHHHHHhc--cH-HHHHHHHHHHHHHHHHH
Confidence            67789999999999987  54 45665565555554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.71  E-value=3.6e-16  Score=146.35  Aligned_cols=260  Identities=14%  Similarity=0.036  Sum_probs=150.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHHHHHHhhc-C
Q 042372           16 RTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMKM-P   94 (402)
Q Consensus        16 ~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~~~~~~~l-p   94 (402)
                      ++|++..+.......+|.++++.+++.+.                       . .+||++|++.++.+++.++..+++ +
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~-----------------------~-~~~~~~f~~~~~~~~~~~~~~~~~~~  192 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILF-----------------------N-INPQINFWLGSGSALILLVLLFFAKP  192 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHH-----------------------h-cCchHhHHHHHHHHHHHHHHHhcccc
Confidence            45677888888888999999999998885                       2 379999999887777655555444 3


Q ss_pred             CCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042372           95 ETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINL  174 (402)
Q Consensus        95 esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (402)
                      |.|+.  . +.++++.                 +  +  +++...++ .+ ..+|++  .++......+.....+.....
T Consensus       193 ~~~~~--~-~~~~~~~-----------------~--~--~~~~~~~~-~~-~~l~~~--~~~~l~l~~~~~~~~~~~~~~  244 (420)
T PRK09528        193 DAPST--A-KVANALG-----------------A--N--ASAVSLKD-AL-ALLKLP--KFWFLVLYVIGVACFYDVFDQ  244 (420)
T ss_pred             cccch--h-hhccchh-----------------c--c--cccccHHH-HH-HHccCC--CeEeehHHHHHHHHHHHHHHH
Confidence            33221  0 0000000                 0  0  00000000 01 111111  111111111111122222222


Q ss_pred             hHhhhhhh----cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372          175 TQKDIYPA----TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR  250 (402)
Q Consensus       175 ~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  250 (402)
                      +.|.++.+    .+.+....+            ....+..++..++.++.|++.||+|||+.+..+.++.++..+++.+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~  312 (420)
T PRK09528        245 QFPNFFASFFATPEQGTRVFG------------YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA  312 (420)
T ss_pred             HHHHHHHHHHhccCcchHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc
Confidence            34444433    233333222            25555566777888899999999999999888877766665555442


Q ss_pred             hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHH-HHHHHHHHHHHHHH
Q 042372          251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGI-SAAAGKAGAIVGAF  329 (402)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~g~~i~~~  329 (402)
                                           .+.+..+. .....+.......+....+..|.+|++.|++..+. .++...+|.++++.
T Consensus       313 ---------------------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~  370 (420)
T PRK09528        313 ---------------------TGPLEVSI-LKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST  370 (420)
T ss_pred             ---------------------ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence                                 22222222 22222221112222344677888999999988765 56778899999999


Q ss_pred             hHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          330 GVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +.+++.+..  ||+..|.+.+++.++..++.++.
T Consensus       371 ~~G~l~~~~--G~~~~f~~~~~~~~i~~~~~~~~  402 (420)
T PRK09528        371 LAGNLYDSI--GFQGTYLILGGIVLLFTLISVFT  402 (420)
T ss_pred             HHHHHHHhh--CchHHHHHHHHHHHHHHHHHHHH
Confidence            999999987  89999998888877766665544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.71  E-value=1.3e-15  Score=141.40  Aligned_cols=262  Identities=15%  Similarity=0.191  Sum_probs=150.5

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |...+++.|++|+++|+++.++......+|..+++.+++.+.                        .++||+.|++.++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~------------------------~~g~~~~f~~~~~~  173 (400)
T PRK11646        118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL------------------------QYDFRLVCATGAVL  173 (400)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhhHHHHHHHHHHH
Confidence            445678899999999999999999999999999999999885                        24799999998776


Q ss_pred             HHHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++.. +..+++||.+.     ++.+++.                         +.+.    + ...+++  .++.....
T Consensus       174 ~~~~~i~~~~~~~~~~~-----~~~~~~~-------------------------~~~~----~-~~~~~~--~~~~~~~~  216 (400)
T PRK11646        174 FVLAAAFNAWLLPAYKL-----STVRTPV-------------------------REGM----T-RVLRDK--RFVTYVLT  216 (400)
T ss_pred             HHHHHHHHHHhCCcccc-----cccchhh-------------------------HHHH----H-HHHcCc--hHHHHHHH
Confidence            65543 33445665311     0000000                         0000    1 111111  11111112


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-cccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLI-DRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~~~~~~~~~  240 (402)
                      .+...........+.|.+.++.+.++...+.            ......+....+....+++. ||++.++.+..+..+.
T Consensus       217 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~------------l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  284 (400)
T PRK11646        217 LTGYYMLAVQVMLMLPIMVNDIAGSPSAVKW------------MYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIM  284 (400)
T ss_pred             HHHHHHHHHHHHHhhhhhHHhhcCCchHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            2222222223345678888876655554332            33333333333333334444 4566566666666555


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      +++..++...                     ++.+.... .....+.+.....+...++..+..|++.|+++.|+.+...
T Consensus       285 ~~~~~~l~~~---------------------~~~~~~~~-~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~  342 (400)
T PRK11646        285 SLSMFPIGMV---------------------SNLQQLFT-LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGL  342 (400)
T ss_pred             HHHHHHHHHh---------------------hhHHHHHH-HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHH
Confidence            5555444332                     11112211 1111222222233455567789999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcCC--CchhhhHHHHHHHHHHHHH
Q 042372          321 KAGAIVGAFGVQYYTQKGDK--QIKQSIIALAVVNFLGFLC  359 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  359 (402)
                      .+|..++|.+.+.+.+..+.  ....++++.+++.+++.+.
T Consensus       343 ~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        343 ALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            99999999999999887521  1335555545555555444

>PRK10054 putative transporter; Provisional

Probab=99.71  E-value=1.9e-15  Score=140.06  Aligned_cols=262  Identities=9%  Similarity=0.047  Sum_probs=153.9

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |...++..|..|+++|+++.++.....++|.++++.+++.+.                       . .+||.+|++.++.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~-----------------------~-~g~~~~f~~~~~~  170 (395)
T PRK10054        115 TVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV-----------------------M-QSINLPFWLAAIC  170 (395)
T ss_pred             HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------H-hccCcHHHHHHHH
Confidence            345677889999999999999999999999999999999875                       2 4799999988777


Q ss_pred             HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++.++ ..+++||+++.    ++++++.                         ....++.++++       .++.....
T Consensus       171 ~~i~~i~~~~~~~~~~~~----~~~~~~~-------------------------~~~~~~~~~~~-------~~~~~~~~  214 (395)
T PRK10054        171 SAFPLVFIQIWVQRSEKA----IATETGS-------------------------VWSPSVLLQDK-------ALLWFTCS  214 (395)
T ss_pred             HHHHHHHHHHHHhccccc----cccchhh-------------------------hhhhhhhccCc-------eehHHHHH
Confidence            666543 34446654321    1000000                         00000111111       12222222


Q ss_pred             HHHHHHHHHHHHHhHhhhhh---hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYP---ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  238 (402)
                      .++....+.....+.+.+..   +.+.+...            .+.......+...+.....+.+.||.++|+.+..+..
T Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~  282 (395)
T PRK10054        215 GFLASFVSGAFASCISQYVMVVADSDFAEKV------------VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTL  282 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHhcccchHHHH------------HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHH
Confidence            22222222222223333332   23333322            1224445555556666778899999999998888876


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      +..++...+....                    ++. ....+.....+.+.....+....++.+..|++.|+++.+..+ 
T Consensus       283 ~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-  340 (395)
T PRK10054        283 CFVIGLVGFIFSG--------------------NSL-LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-  340 (395)
T ss_pred             HHHHHHHHHHHcc--------------------hHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-
Confidence            6666554443320                    111 222222222232233333455567788899999999988654 


Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372          319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS  360 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (402)
                      ..++|..+||.+.+.+.+..  +....|++.+++..+..++.
T Consensus       341 ~~~~G~~~Gp~~~G~l~~~~--g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        341 LGWLGAAINPLVSGVILTTL--PPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHc--ChhhHHHHHHHHHHHHHHHH
Confidence            67789999999999999987  66666766555544444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.71  E-value=3.1e-15  Score=141.30  Aligned_cols=271  Identities=11%  Similarity=0.012  Sum_probs=174.7

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      |+-.+++.|..|+++...+.++.+...++..++||.+++.+.                       ...|-.+.|++.++.
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv-----------------------a~~G~~~~f~inals  178 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV-----------------------AFFGAAAAFLINALS  178 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH-----------------------HHHHHHHHHHHHHHH
Confidence            566789999999999999999999999999999999999988                       445567788887665


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      -++.++....++..++.   ++..++.-.+.+                         ++-++.....+..+..+..   .
T Consensus       179 fl~~i~~l~~~~~~~~~---~~~~~e~~~~~l-------------------------~~G~ryv~~~~~l~~~l~~---~  227 (524)
T PF05977_consen  179 FLISILALLRWKPPPPP---SSLPRERFFSAL-------------------------REGLRYVRSSPPLRSVLLR---S  227 (524)
T ss_pred             HHHHHHHHHHccccccc---cccchhhhhhhH-------------------------HHHHHHHhcchHHHHHHHH---H
Confidence            44444333333322110   011111100001                         1111111111111112221   1


Q ss_pred             HHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  241 (402)
                      +............+|.+.++ +|.++...|+            +....+++.++|+++.+++.+|+++++++..+.++.+
T Consensus       228 ~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGl------------l~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a  295 (524)
T PF05977_consen  228 FLFNLFASAVWALLPLFARDVLGGGASGYGL------------LLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFA  295 (524)
T ss_pred             HHHHHhhhHHHHhhhHHHHHHhCCcHHHHHH------------HHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHH
Confidence            12222222333446777765 6777665554            7788899999999999999999999888888877777


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK  321 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  321 (402)
                      ++++.+++.                     .+.+. ..+..+..+++.........+...+..|++.||++.+++++...
T Consensus       296 ~~~~~lal~---------------------~~~~~-~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~  353 (524)
T PF05977_consen  296 LALLLLALS---------------------PSFWL-ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF  353 (524)
T ss_pred             HHHHHHhcc---------------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence            766666553                     22222 22222233333333344555677899999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .+..+|..+.|.+.+..  +.+..+.+.++..+++.++.+..
T Consensus       354 g~~~lGsll~G~la~~~--g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  354 GGMPLGSLLWGFLADHF--GVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988  77888877777666666655533

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01272 gluP glucose/galactose transporter

Probab=99.70  E-value=4.1e-15  Score=132.59  Aligned_cols=267  Identities=12%  Similarity=-0.032  Sum_probs=161.4

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +.+..|+++..|++++.+.+++.+.+.++|.+++|.+++.+......+...       ..+........||+++++.+..
T Consensus        29 ~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~yl~ia~~  101 (310)
T TIGR01272        29 VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM-------QVATANAEAAKVHTPYLLLAGA  101 (310)
T ss_pred             hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh-------hhhhhhHHHHHHHHHHHHHHHH
Confidence            457789999999999999999999999999999999999887321100000       0000000125799999965544


Q ss_pred             HHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           83 AALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        83 ~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      .++..+.+.+  +||..+      ++.++.                .+. +    ...     ++..+++  +..+...+
T Consensus       102 ~~~~~i~~~~~~~p~~~~------~~~~~~----------------~~~-~----~~~-----~~~~~~~--~~~~l~~~  147 (310)
T TIGR01272       102 LAVLAIIFAFLPLPELQE------ADVARV----------------SSG-D----TTQ-----KTSAFQF--THLVLGAL  147 (310)
T ss_pred             HHHHHHHHHHccCCCCCc------cccccc----------------ccc-c----ccc-----hhhHHhh--HHHHHHHH
Confidence            3333333223  455311      100000                000 0    000     0111111  12333344


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh---cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA---TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGF  237 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~  237 (402)
                      ..++......+...|.+.|+.+   .|+++.+.+.            .......+.++|.++++++.||+|+|+.+.++.
T Consensus       148 ~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~------------~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~  215 (310)
T TIGR01272       148 GIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAH------------FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA  215 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            4444444555677788888864   4777775544            777888889999999999999999999888776


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH
Q 042372          238 LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA  317 (402)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  317 (402)
                      .+.+++.++....                     .......  .....+++.....|...+...+.+|++ .+++.++. 
T Consensus       216 ~l~~~~~~l~~~~---------------------~~~~~~~--~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-  270 (310)
T TIGR01272       216 FLAVLLSIGAALT---------------------HGYVAMW--FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-  270 (310)
T ss_pred             HHHHHHHHHHHHc---------------------CCHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-
Confidence            6666554333321                     1111111  122233444555667777777877764 35666664 


Q ss_pred             HHHHHHHHHHHHhHHHHhhhcCCCchhhhHHH
Q 042372          318 AAGKAGAIVGAFGVQYYTQKGDKQIKQSIIAL  349 (402)
Q Consensus       318 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~  349 (402)
                      ..+.+|+++.|.+.|.+.+..  +.+.++++.
T Consensus       271 ~~~~~Gg~i~P~l~G~lad~~--g~~~a~~v~  300 (310)
T TIGR01272       271 CLAIVGGAIVPLLQGSLADCL--GIQLAFALP  300 (310)
T ss_pred             HHHHhcchHHHHHHHHHHHhc--cchHHHHHH
Confidence            677899999999999999877  666766643

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.69  E-value=1.4e-14  Score=135.55  Aligned_cols=295  Identities=16%  Similarity=0.127  Sum_probs=192.0

Q ss_pred             hHHhhhhccccch--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccc
Q 042372            6 AVIMSEYANKRTR--------------------------GAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRN   59 (402)
Q Consensus         6 ~~~i~e~~~~~~r--------------------------g~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~   59 (402)
                      .+++.|.++++++                          ++..+.-.....+|.++..++...+....+..         
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~---------  218 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST---------  218 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---------
Confidence            4678888888888                          99999888888888888888777765322110         


Q ss_pred             cccccCCCCCcchhHHHHHhhHH-HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcc
Q 042372           60 HVLSAQPQGDYLWRIVLMFGAVP-AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEAS  138 (402)
Q Consensus        60 ~~~~~~~~~~~~Wr~~f~~~~i~-~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (402)
                            ......-|..+.+.++. .+..+...+++||.|+.. ..++...-...-.+                      .
T Consensus       219 ------~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~-~~~~~~~~~~~g~~----------------------~  269 (477)
T PF11700_consen  219 ------ASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPR-PLPSGSSYLRFGFK----------------------R  269 (477)
T ss_pred             ------cccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCcchhHHHHHHH----------------------H
Confidence                  11344568888887765 445666777789887520 00111110000000                      0


Q ss_pred             cccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccc
Q 042372          139 TYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGY  217 (402)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~  217 (402)
                      .++.+++  .+ +.+......+.+++..-+...+......|.. .+|++..+...            ......+..++|+
T Consensus       270 l~~t~k~--~~-~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~------------~~l~~~i~a~~Ga  334 (477)
T PF11700_consen  270 LWRTFKE--IR-KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIV------------FGLVVQIVAIIGA  334 (477)
T ss_pred             HHHHHHH--HH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHH------------HHHHHHHHHHHHH
Confidence            1111111  11 2234444555556555566666666677766 58999886444            6777788889999


Q ss_pred             hhhhhhccccchh--HHHHHHHHHHHHHHHHHHH--hhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCc
Q 042372          218 WFTVFLIDRIGRF--IIQLGGFLLMSICMAILGA--RYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPN  293 (402)
Q Consensus       218 ~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (402)
                      ++.|++.||+|.|  ++++++..+..+..+.-.+  .......               .+.+. ..++.+..+.+..+..
T Consensus       335 ~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~---------------~~~~~-f~~~a~~~G~~~G~~q  398 (477)
T PF11700_consen  335 LLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL---------------KSPWE-FWVLAVLIGLFMGGIQ  398 (477)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc---------------ccHHH-HHHHHHHHHHHhhhHH
Confidence            9999999999998  7776665544333222111  1110000               12222 2233334444455667


Q ss_pred             ccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCCCC
Q 042372          294 STTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNGLS  370 (402)
Q Consensus       294 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~~  370 (402)
                      +..-++.+|+.|+...+...|++...+...+++||++++.+.+.++ +.+..+....++.+++.++.++++..+++.
T Consensus       399 s~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~  474 (477)
T PF11700_consen  399 SASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLILLFFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence            7788888999999999999999999999999999999999999986 588888888888888888888776655543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00896 CynX cyanate transporter

Probab=99.67  E-value=6.6e-15  Score=134.69  Aligned_cols=242  Identities=13%  Similarity=0.077  Sum_probs=148.7

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHH
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPA   83 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~   83 (402)
                      ....++.|++| ++|+++.++++.+..+|..+++.+++.+...                     ...+||+.|.+.++..
T Consensus       107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~---------------------~~~~w~~~f~~~~~~~  164 (355)
T TIGR00896       107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH---------------------SGGHWQQALAWWALPA  164 (355)
T ss_pred             cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hhhhHHHHHHHHHHHH
Confidence            45567788886 6899999999999999999999998877621                     1124999988766554


Q ss_pred             HHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           84 ALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        84 ~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      ++..+  .++||+++.    +++ ++                       ...+...++.++++       ..+......+
T Consensus       165 ~~~~~--~~~~~~~~~----~~~-~~-----------------------~~~~~~~~~~~~~~-------~~~~~~~~~~  207 (355)
T TIGR00896       165 LLALL--AWIPQVRRR----VAA-NQ-----------------------TTTRLTPVRIWRSP-------LAWQVTVFFG  207 (355)
T ss_pred             HHHHH--HHhhhhccc----cCC-CC-----------------------CCCCCCCchhhcCH-------hHHHHHHHHH
Confidence            43322  234543210    000 00                       00001111222221       2233333334


Q ss_pred             HHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-chhHHHHHHHHHHHH
Q 042372          164 LLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-GRFIIQLGGFLLMSI  242 (402)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~  242 (402)
                      .....++....+.|.++++.|++....+.            ......++.+++.++.|++.||+ +||+.+.++..+.++
T Consensus       208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~------------~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILISHGASAATAGS------------LLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            44455667778889999888888765444            66777888899999999999999 566666666666666


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeeccc-CchhhhhhhHHHHHHHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAEL-FPARLRSTCHGISAAAGK  321 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~~  321 (402)
                      +.+.+....                    ... ...  .....+.+.....+.......+. .+++.++...++.+....
T Consensus       276 ~~~~~~~~~--------------------~~~-~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  332 (355)
T TIGR00896       276 GLCGLLFAP--------------------MHG-LWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGY  332 (355)
T ss_pred             HHHHHHHhh--------------------hhH-HHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            554444321                    111 111  11222222233333433444443 446777899999999999


Q ss_pred             HHHHHHHHhHHHHhhhcC
Q 042372          322 AGAIVGAFGVQYYTQKGD  339 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~  339 (402)
                      ++.+++|.+.+.+.+..+
T Consensus       333 ~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       333 LLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999998774

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.67  E-value=6.3e-16  Score=145.29  Aligned_cols=299  Identities=12%  Similarity=0.101  Sum_probs=191.4

Q ss_pred             hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      +.+++.. +.+|+|+.+.|+..++.++|.++-+.+.-.+.                       +..|||+.+++.+.+.+
T Consensus       156 aiviv~~-YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~-----------------------~~~G~r~~~l~~~~~~l  211 (509)
T KOG2504|consen  156 AVVILGT-YFEKKRALATGIAVSGTGVGTVVFPPLLKYLL-----------------------SKYGWRGALLIFGGISL  211 (509)
T ss_pred             hhhhhhh-HhHHHHHHHHhhhhccCCcceeeHHHHHHHHH-----------------------HHhCcHHHHHHHHHHHH
Confidence            3445554 44779999999999999999999999888887                       77899999988766665


Q ss_pred             HHHHHHhhc-CCCchhHhhhcCCHHHHHHHHHHhhc---ccccccc---------------CCCCCCCCCCc--ccccch
Q 042372           85 LTYYWRMKM-PETARYTALVEGNQKKAAVDMAKVLD---TDINVAT---------------SAYPAPVSPEA--STYGLF  143 (402)
Q Consensus        85 ~~~~~~~~l-pesp~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------~~~~~~~~~~~--~~~~~~  143 (402)
                      -.++....+ |.+++-   ++. .++..+.......   .+.+...               .+.++.+++..  .....+
T Consensus       212 ~~~~~~~~~rp~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (509)
T KOG2504|consen  212 NVLVAGALLRPLSPPK---KPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFL  287 (509)
T ss_pred             HHHHHHHHcCCCCcCC---Cch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhh
Confidence            544443333 333321   011 1111000000000   0000000               00000000000  111111


Q ss_pred             ---hhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhh
Q 042372          144 ---SKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFT  220 (402)
Q Consensus       144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~  220 (402)
                         ..+.++.  +.++...+...+...+++....++|.+..+.|++..+...            ...+.++..+++.++.
T Consensus       288 ~~~d~~ll~~--~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~------------l~Siigi~~i~gRi~~  353 (509)
T KOG2504|consen  288 SMLDLSLLKD--PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAF------------LLSIIGVSDIIGRIIL  353 (509)
T ss_pred             hhhhHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHH------------HHHHHHHhhhhhhhhh
Confidence               1333333  3566666677777788899999999999999999887665            7888899999999999


Q ss_pred             hhhccccch--hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCccccee
Q 042372          221 VFLIDRIGR--FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFI  298 (402)
Q Consensus       221 g~l~dr~gr--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (402)
                      |++.|+...  +.+..++.++.+++...+...                     .+. ..+..+.+..++...........
T Consensus       354 G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~---------------------~~~-~~l~~~~~~fG~~~g~~~~l~~~  411 (509)
T KOG2504|consen  354 GLLADKPGIRALVLFLLTLLIAGLARLFLPFA---------------------TTY-VGLIVFSILFGFCVGSFSSLTPV  411 (509)
T ss_pred             hhhcCccccchHHHHHHHHHHHHHHHHHHHHh---------------------ccH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999883  444445544444444333332                     222 23333333333333333334445


Q ss_pred             eecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc-cCCC
Q 042372          299 VPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP-ETNG  368 (402)
Q Consensus       299 ~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-et~~  368 (402)
                      .+.|+.+.+.-+.+.|+...+..++..+||.+.+++.+..+ +|...|...+++.+++.++.+..+ +.+.
T Consensus       412 i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~  481 (509)
T KOG2504|consen  412 ILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSAVLLLILRECLKR  481 (509)
T ss_pred             HHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHHHHHHHhHHHHHh
Confidence            77899999999999999999999999999999999999885 599999999999999888877766 4433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.65  E-value=7.1e-15  Score=135.06  Aligned_cols=254  Identities=14%  Similarity=0.092  Sum_probs=141.3

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHH-HhhH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLM-FGAV   81 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~-~~~i   81 (402)
                      +....+++|++|+++|+++.++......+|..+++.++..+......+.+             .....+||+.|+ ..++
T Consensus       109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~-------------~~~~~~w~~~~~~~~~~  175 (366)
T TIGR00886       109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAG-------------LPAHLAWGWAFVIVPAG  175 (366)
T ss_pred             HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-------------ccccccccchhHHHHHH
Confidence            34567899999999999999999988888888888877766532211100             113458999994 4343


Q ss_pred             H-HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 P-AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~-~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      . .++.++...+.+|+|+.    ++++++. +         ...+...     .++....+ .+ +.+++  +.++....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~----~~~~~~~-~---------~~~~~~~-----~~~~~~~~-~~-~~~~~--~~~~~~~~  232 (366)
T TIGR00886       176 ILLLPALLIFFVGADTPPG----KPATGKL-S---------FKGARWS-----VGTGALGD-QL-KVFRD--RHTWILAL  232 (366)
T ss_pred             HHHHHHHHHHHhcccCCcc----cccchhc-c---------ccccccc-----ccchhHHH-HH-HHHhc--cchhhHHH
Confidence            3 34444555566776642    1110000 0         0000000     00000000 01 11111  12333333


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      ..+......+....+.|.++++ +|+++.+.+.            ......+..+++.++.|+++||+|||+.+..+...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~  300 (366)
T TIGR00886       233 LYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGA------------YASLGGLLGSLARPLGGAISDRLGGARKLLMSFLG  300 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH------------HHHHHHHHHHHHhhccchHHHhhccchhHHHHHHH
Confidence            3344444555666777888865 6887765443            56666777788888999999999998877776655


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ...+..++.....   ..              .+.............+.+. ..+..+.+..+..| +.++++.|+.+..
T Consensus       301 ~~~~~~~~~~~~~---~~--------------~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~  361 (366)
T TIGR00886       301 VAMGAFLVVLGLV---SP--------------LSLAVFIVLFVALFFFSGA-GNGSTFALVPHIFR-RATGAVSGLVGAI  361 (366)
T ss_pred             HHHHHHHHHhcCC---Cc--------------chHHHHHHHHHHHHHHhcc-ccchhhhcchhhch-hhcccHHHHHHHh
Confidence            5554444433211   00              0122222222222222222 23456677788887 6889999999888


Q ss_pred             HHHH
Q 042372          320 GKAG  323 (402)
Q Consensus       320 ~~~g  323 (402)
                      +++|
T Consensus       362 ~~~g  365 (366)
T TIGR00886       362 GNLG  365 (366)
T ss_pred             ccCC
Confidence            7765

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.65  E-value=4.5e-14  Score=131.55  Aligned_cols=258  Identities=13%  Similarity=0.020  Sum_probs=142.9

Q ss_pred             hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      ..+++.|++|+++|++++++...+..+|.++++.+++.+.                       +..+||+.|++.++..+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~-----------------------~~~gw~~~f~~~~~~~~  181 (413)
T PRK15403        125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM-----------------------HFVHWKVLFAIIAVMGL  181 (413)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhcCHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999998886                       55789999999888777


Q ss_pred             HHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           85 LTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        85 ~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      +.++. .+++||+++.    ++++.+...                          ..+.++ ..+++  +.++.......
T Consensus       182 i~~~~~~~~lp~~~~~----~~~~~~~~~--------------------------~~~~~~-~ll~~--~~~~~~~l~~~  228 (413)
T PRK15403        182 IAFVGLLLAMPETVKR----GAVPFSAKS--------------------------VLRDFR-NVFRN--RLFLTGAATLS  228 (413)
T ss_pred             HHHHHHHHhCCCCccc----cCCCCChHH--------------------------HHHHHH-HHHcC--HHHHHHHHHHH
Confidence            65543 4568887531    111000000                          000001 11111  13333333344


Q ss_pred             HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-cccchhHHHHHHHHHHH
Q 042372          164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLI-DRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~~~~~~~~~~  241 (402)
                      .....++....+.|.++++ .|++..+.+.            .......+.++++.+.+.+. |+.++|. ......+..
T Consensus       229 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl------------~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~  295 (413)
T PRK15403        229 LSYIPMMSWVAVSPVILIDAGGMTTSQFAW------------TQVPVFGAVIVANAIVARFVKDPTEPRF-IWRAVPIQL  295 (413)
T ss_pred             HHHHHHHHHHHhChHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhccCCchhH-HHHHHHHHH
Confidence            4445556666778888876 5788776544            44444555566666666655 4444443 322222222


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccce--eeecccCchhhhhhhHHHHHHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTF--IVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ++..++...... . .              ...+.......+. +.+.....+...  ++...   ...+|++.++.+..
T Consensus       296 ig~~l~~~~~~~-~-~--------------~~~~~~~~~~~l~-~~G~~~~~p~~~~~al~~~---~~~~G~a~a~~~~~  355 (413)
T PRK15403        296 VGLALLIVGNLL-W-P--------------HVWLWSVLGTSLY-AFGIGLIFPTLFRFTLFSN---NLPKGTVSASLNMV  355 (413)
T ss_pred             HHHHHHHHHHHH-c-c--------------ccHHHHHHHHHHH-HHHHHHHhHHHHHHHhccC---CCCCcHHHHHHHHH
Confidence            222222221100 0 0              1111111111111 111111222222  22112   22378999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHH
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNF  354 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (402)
                      ...+..+++...+++...   +-...|...+++..
T Consensus       356 ~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~  387 (413)
T PRK15403        356 ILMVMAVSVEIGRWLWFN---GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHH
Confidence            988888999888888765   34455554444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.2e-15  Score=135.75  Aligned_cols=262  Identities=13%  Similarity=0.096  Sum_probs=143.0

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      .|+++++++|.+|..+|++.+++++.+.++|..+|.+.+..+.+                      ....|||.|+..++
T Consensus       139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~----------------------~~~~Wr~af~~~av  196 (493)
T KOG1330|consen  139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS----------------------LTFWWRWAFRGSAV  196 (493)
T ss_pred             cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc----------------------CccceEEEEEeehH
Confidence            37889999999999999999999999999999999999888762                      22239999999998


Q ss_pred             HHHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHh-hhhhHHHHHHH
Q 042372           82 PAALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFV-QKHGLHLLGTT  159 (402)
Q Consensus        82 ~~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  159 (402)
                      ++++. ++..++++|.+|-      ..++.            +   .+. +......+.++.++.... +......+...
T Consensus       197 l~vi~~~L~~~f~~eP~rg------a~~~~------------~---~~~-~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~  254 (493)
T KOG1330|consen  197 LGVIVGLLVFLFVREPERG------ARDEV------------D---GEN-KMVKPFTSVWKDLKVLAKIKVFVLSSLGII  254 (493)
T ss_pred             HHHHHHHHHHhhccCcccc------ccccc------------c---cCC-cCCCCccchHHHHHHHHccCceeeehHHHH
Confidence            88875 4556667775421      11110            0   000 001112222222222211 11111222222


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhh----hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh-----
Q 042372          160 STWFLLDIAFYTINLTQKDIYP----ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF-----  230 (402)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr-----  230 (402)
                      ...+..+    ++..|.|.+..    -.|++..            .+.+...+...++.+|.+++|.++||+.|+     
T Consensus       255 a~~fv~G----s~sww~p~~~~~~~~~~~~~~~------------~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~  318 (493)
T KOG1330|consen  255 AAQFVIG----SLSWWAPAFIYYSYELIGFDHN------------ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSG  318 (493)
T ss_pred             HHHHhcc----ccchhhhhHHHHHHHHhCCccc------------cchhhhhHHHhhchhhheehHHHHHHHHHhccccc
Confidence            2222222    22233333332    2344443            333377778888889999999999995332     


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh
Q 042372          231 --IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL  308 (402)
Q Consensus       231 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  308 (402)
                        +.--....+.+...+.+.+... ....              .+.+..++++.+........ .+...-+..|+.|++.
T Consensus       319 ~~~~~q~~~~~g~~~s~~~L~~~~-~~~~--------------~s~~~~~il~~~g~~~~~~~-~a~n~~i~l~vV~p~~  382 (493)
T KOG1330|consen  319 TLRASQLSAALGAPLSIPFLFLFP-AFTS--------------SSMIFGLILFLVGETISWFN-WATNNPIFLEVVPPSR  382 (493)
T ss_pred             chhHHHHHHhhhhhHHHHHHHHHH-hhhh--------------HHHHHHHHHHHHHHHHHhcc-cccccceeeEecCccc
Confidence              1111111111111111111100 0000              22222222222222222222 2334445688999999


Q ss_pred             hhhhHHHHHHHHHHHHH-HHHHhHHHHhhhcC
Q 042372          309 RSTCHGISAAAGKAGAI-VGAFGVQYYTQKGD  339 (402)
Q Consensus       309 r~~~~~~~~~~~~~g~~-i~~~~~~~~~~~~~  339 (402)
                      |.++.++...+..+.+- -+|.+.|.+.+...
T Consensus       383 Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~  414 (493)
T KOG1330|consen  383 RTTAYALDTVFEHIFGDAASPYIVGILSDKLR  414 (493)
T ss_pred             ccHHHHHHHHHHHHhccCCCcceehhHHHHhh
Confidence            99999999888776544 55568888888765

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.63  E-value=1.4e-14  Score=134.48  Aligned_cols=257  Identities=13%  Similarity=0.010  Sum_probs=145.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHHHHHHhh-cCC
Q 042372           17 TRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMK-MPE   95 (402)
Q Consensus        17 ~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~~~~~~~-lpe   95 (402)
                      ++++..+......++|.++++.+++.+.                        ..+||.+|++.++..++..+..++ .||
T Consensus       130 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~------------------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~  185 (396)
T TIGR00882       130 NSNFEYGKARMFGCVGWALCASIAGILF------------------------SIDPQIVFWLGSGFALILMLLLMFAKPK  185 (396)
T ss_pred             hcccccchhhhhcccHHHHHHHHHhhhh------------------------ccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3445667777788899999999988764                        348999999988777765544444 444


Q ss_pred             CchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042372           96 TARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLT  175 (402)
Q Consensus        96 sp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (402)
                      +|+.    ++ .+++           .     +.++.+.+.++..+.+++    +   .++......++....+.....+
T Consensus       186 ~~~~----~~-~~~~-----------~-----~~~~~~~~~~~~~~~l~~----~---~~~~~~l~~~~~~~~~~~~~~~  237 (396)
T TIGR00882       186 APSS----AT-VANA-----------L-----GANASAFSLKLALELFRQ----R---KFWMFVLYVVGVACVYDVFDQQ  237 (396)
T ss_pred             Cchh----hh-hhcc-----------c-----ccccCCCCHHHHHHHHcC----C---cHHHHHHHHHHHHHHHHHHHHH
Confidence            4321    00 0000           0     000000001111111221    1   1222222222222233333334


Q ss_pred             Hhhhhhhc----CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 042372          176 QKDIYPAT----GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARY  251 (402)
Q Consensus       176 ~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  251 (402)
                      .+.++++.    +.+....            +.......+...++.+..+++.||+|||+.+.++..+.++...+.... 
T Consensus       238 ~~~y~~~~~~~~~~~~~~~------------g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-  304 (396)
T TIGR00882       238 FANFFTSFFATPQQGTRVF------------GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-  304 (396)
T ss_pred             HHHHHHHhccccccchHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-
Confidence            45555442    2222222            224555666677777889999999999999888877666655443321 


Q ss_pred             ccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHH-HHHHHHHHHHHHHHh
Q 042372          252 DSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGI-SAAAGKAGAIVGAFG  330 (402)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~g~~i~~~~  330 (402)
                                          .+.+.... .....+............+..+..|++.++++.+. .+....+|+++++.+
T Consensus       305 --------------------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l  363 (396)
T TIGR00882       305 --------------------TTALEVVI-LKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL  363 (396)
T ss_pred             --------------------CChHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence                                12222222 22222221111112233455677788888887766 567889999999999


Q ss_pred             HHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372          331 VQYYTQKGDKQIKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (402)
                      .+++.+..  |++.+|.+.+++.++..++..
T Consensus       364 ~G~l~~~~--G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       364 AGNMYDSI--GFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHhc--ccHHHHHHHHHHHHHHHHHHH
Confidence            99999987  899999998888777766544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.61  E-value=1.1e-13  Score=119.63  Aligned_cols=263  Identities=15%  Similarity=0.131  Sum_probs=181.5

Q ss_pred             hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      .+..+-+.+|+ +-+..++++....++|.++++.++-.+..                      ...+||....+-+++++
T Consensus       120 LPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~----------------------~~~gW~~aL~~WAl~al  176 (395)
T COG2807         120 LPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQ----------------------HSGGWRGALGFWALLAL  176 (395)
T ss_pred             hhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHH----------------------hhccHHHHHHHHHHHHH
Confidence            45667777754 67999999999999999999999988862                      22579999999999988


Q ss_pred             HHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372           85 LTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL  164 (402)
Q Consensus        85 ~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (402)
                      +.++.+  +|...|.     +....                       ..+..+..+++++       +..+.+.+.+..
T Consensus       177 lAl~~W--lPq~~r~-----~~~~~-----------------------~~~~~~~~~vw~~-------~~aW~vtLfmGl  219 (395)
T COG2807         177 LALLIW--LPQALRE-----QAASI-----------------------ATKLVSVRKVWRS-------PLAWQVTLFMGL  219 (395)
T ss_pred             HHHHHH--hhhcccc-----ccccc-----------------------ccccccccccccC-------chhHHHHHHHHh
Confidence            877764  3432211     00000                       0001111122222       256667777777


Q ss_pred             HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-chhHHHHHHHHHHHHH
Q 042372          165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-GRFIIQLGGFLLMSIC  243 (402)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~  243 (402)
                      +...+|....|+|.++.+.|+|..+.+.            ...+..+.+++.++....+.+|. .+|+..+.....+.++
T Consensus       220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~------------llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         220 QSLLYYIVIGWLPAILIDRGLSAAEAGS------------LLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCHHHhhh------------HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            8889999999999999999999997665            78888888999999999999975 4566666555555555


Q ss_pred             HHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-hhhhhhhHHHHHHHHHH
Q 042372          244 MAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-ARLRSTCHGISAAAGKA  322 (402)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~  322 (402)
                      .+.+.+...                   ...+.++    +..+.+..+.++...+.+..... ++..+.-.++.+.++++
T Consensus       288 ~~G~~~~P~-------------------~~~~lw~----~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYl  344 (395)
T COG2807         288 LVGLLLAPG-------------------QLPILWA----LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYL  344 (395)
T ss_pred             HHHHHHhhh-------------------hHHHHHH----HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHH
Confidence            555443211                   2222221    22233334444555555555544 45567778999999999


Q ss_pred             HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      -..+||.++|++.|..+ +|..++..++...++..+..+..
T Consensus       345 lAa~GP~l~G~lhDa~g-sw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         345 LAAFGPWLFGFLHDATG-SWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             HHhhhhhhHhHHHHhcC-ChHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999988 89888888877777766665543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.61  E-value=2.5e-13  Score=126.11  Aligned_cols=242  Identities=14%  Similarity=0.071  Sum_probs=137.3

Q ss_pred             hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      ...+..|.+++++|+++.+....+..+|..+++.+++.+.                       +..+||+.|++.++..+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-----------------------~~~g~~~~f~~~~~~~~  173 (394)
T PRK11652        117 ARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT-----------------------TLFGWRACYLFLLLLGA  173 (394)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccChHHHHHHHHHHHH
Confidence            4456788899999999999999999999999999999886                       56789999999776655


Q ss_pred             H-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           85 L-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        85 ~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      + .++..+++||+++.    ++++++..+.                         .+..++++..    +..+...   +
T Consensus       174 ~~~~~~~~~~~~~~~~----~~~~~~~~~~-------------------------~~~~~~~~~~----~~~~~~~---~  217 (394)
T PRK11652        174 GVTFSMARWMPETRPA----DARRTRVLAS-------------------------YRTLLSNRRF----NCYLLML---I  217 (394)
T ss_pred             HHHHHHHHhCCccCcc----ccchhHHHHH-------------------------HHHHHcChHH----HHHHHHH---H
Confidence            4 34445667887532    1111110000                         0011111111    1111111   1


Q ss_pred             HHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHH
Q 042372          164 LLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSI  242 (402)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  242 (402)
                      ...........+.+.++++ +|++....+.            ......++.+++.++.+++.||.+++......  ...+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~--~~~~  283 (394)
T PRK11652        218 GTLAGIAVFEACSGVLMGAVLGLSSMTVSI------------LFILPIPAAFFGAWFAGRPNKRFSTLMWQSVI--CCLL  283 (394)
T ss_pred             HHHHHHHHHHHhChHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            1112222333344556665 7777664333            45556677777777888888888743332212  1122


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA  322 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  322 (402)
                      ..+.+..... ...               ...+... ......+.+.....+....+..|.+| +.++++.++.+....+
T Consensus       284 ~~~~~~~~~~-~~~---------------~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~l  345 (394)
T PRK11652        284 AGLLMWIPGW-FGV---------------MNVWTLL-VPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNI  345 (394)
T ss_pred             HHHHHHHHHH-hcc---------------ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHH
Confidence            2111111110 000               1111222 22222222222344556666778887 5789999999999999


Q ss_pred             HHHHHHHhHHHHhhh
Q 042372          323 GAIVGAFGVQYYTQK  337 (402)
Q Consensus       323 g~~i~~~~~~~~~~~  337 (402)
                      |+.+++.+.+.+...
T Consensus       346 g~~~~~~~~~~~~~~  360 (394)
T PRK11652        346 GSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHccCC
Confidence            999999888877543

>PRK10133 L-fucose transporter; Provisional

Probab=99.59  E-value=3.6e-13  Score=126.27  Aligned_cols=281  Identities=11%  Similarity=-0.024  Sum_probs=153.6

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccC----CCC--CcchhHHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQ----PQG--DYLWRIVL   76 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~Wr~~f   76 (402)
                      +....++.|+.|+++|.+.+++.+..+.+|..+++.++..+..........+.   ..+...+    ...  ..+||++|
T Consensus       136 ~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~---~~~l~~~~~~~w~~~~~~~w~~~f  212 (438)
T PRK10133        136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV---LDKMTPEQLSAYKHSLVLSVQTPY  212 (438)
T ss_pred             hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhh---hhccChhhHHHHHHHHHHHHHHHH
Confidence            45567788888888787789999999999999999998766411000000000   0000000    000  03577777


Q ss_pred             HH-hhHHHHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHH
Q 042372           77 MF-GAVPAALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLH  154 (402)
Q Consensus        77 ~~-~~i~~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (402)
                      +. .++..++.++ ....+||.|..    +++ ++..                     .+..+..++.++++       .
T Consensus       213 ~~~~~v~~~~~~~~~~~~~p~~~~~----~~~-~~~~---------------------~~~~~~~~~ll~~~-------~  259 (438)
T PRK10133        213 MIIVAIVLLVALLIMLTKFPALQSD----NHS-DAKQ---------------------GSFSASLSRLARIR-------H  259 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcc----ccc-cccc---------------------cchhhhHHHHHhCc-------h
Confidence            64 3333333322 23335543210    000 0000                     00000111122221       1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhh-hh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIY-PA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII  232 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  232 (402)
                      +....+..++.....++...|.+.++ ++ .|.++...+.            ......++.++|+++++++.||+|||++
T Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~------------~~~~~~~~~~vG~~~~g~l~~r~g~~~~  327 (438)
T PRK10133        260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAAN------------YLTGTMVCFFIGRFTGTWLISRFAPHKV  327 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            11122222333334444445666563 43 6888876554            7788888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC  312 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  312 (402)
                      +..+.++.++.+.+....                     .....  .......+++.....|..++...+.+|++ .+.+
T Consensus       328 l~~~~~~~~~~~~~~~~~---------------------~~~~~--~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~a  383 (438)
T PRK10133        328 LAAYALIAMALCLISAFA---------------------GGHVG--LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYG  383 (438)
T ss_pred             HHHHHHHHHHHHHHHHHc---------------------CChHH--HHHHHHHHHHHHHHHHHHHHHHHcccchh-hccc
Confidence            888766655444433221                     11111  11222233344555677777888888764 5677


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCCC-chhhhHHHHHHHHHHHH
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQ-IKQSIIALAVVNFLGFL  358 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  358 (402)
                      .++.. ...+|+.++|.+.+.+.+..  + .+..|++..+..+....
T Consensus       384 s~l~~-~~~~g~~~~~~i~G~l~~~~--g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        384 SSFIV-MTIIGGGIVTPVMGFVSDAA--GNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             hhHHh-HHhccchHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHH
Confidence            77775 45578888999999988876  4 56777655444443333

>TIGR00895 2A0115 benzoate transport

Probab=99.59  E-value=2.9e-14  Score=132.43  Aligned_cols=179  Identities=18%  Similarity=0.183  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .........+...........+.|.+.+++|.+..+.+.            ......++.+++.++.|+++||+|||+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~   85 (398)
T TIGR00895        18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGF------------LFSAGLIGMAFGALFFGPLADRIGRKRVL   85 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHH------------HHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence            344444445555555566667788888888888776544            66677778888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      ..+.++..++.++....                     .+. ....+..+..+++.....+...++..|.+|++.|+++.
T Consensus        86 ~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~  143 (398)
T TIGR00895        86 LWSILLFSVFTLLCALA---------------------TNV-TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAV  143 (398)
T ss_pred             HHHHHHHHHHHHHHHHc---------------------cch-HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhH
Confidence            98887777766655542                     122 22233333334434445567778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNG  368 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~  368 (402)
                      ++......+|..+++.+.+.+.+..  +|+..+++.+++.++..++.+ ++||+..
T Consensus       144 ~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (398)
T TIGR00895       144 GLMFCGYPIGAAVGGFLAGWLIPVF--GWRSLFYVGGIAPLLLLLLLMRFLPESID  197 (398)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHhhcc--cceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence            9999999999999999999988876  899888887655555544444 5577643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.59  E-value=3.1e-13  Score=125.55  Aligned_cols=279  Identities=10%  Similarity=-0.050  Sum_probs=152.1

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccc-cccc--ccccCCCCCcchhHHHHHh
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAF-NRNH--VLSAQPQGDYLWRIVLMFG   79 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~Wr~~f~~~   79 (402)
                      +....++.+..|+++|++.+++.+...++|..+++.++..+.....+....... ..++  +......+..+||++|++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~  192 (410)
T TIGR00885       113 TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMII  192 (410)
T ss_pred             hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678889999999999999999999999999999998876321000000000 0000  0000000235799999887


Q ss_pred             hHHHHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHH
Q 042372           80 AVPAALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLG  157 (402)
Q Consensus        80 ~i~~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (402)
                      +++.++..++..+  +||.++      +++++.                    +   ......+.++++       .+..
T Consensus       193 a~~~~~~~~~~~~~~~p~~~~------~~~~~~--------------------~---~~~~~~~~~~~~-------~~~~  236 (410)
T TIGR00885       193 GAVVLAVALLIMLTKMPALNH------SDAKQI--------------------S---FSASLSRLARIR-------HYRE  236 (410)
T ss_pred             HHHHHHHHHHHHHhcCCCCCc------cccccc--------------------c---chhhHHHHHhCh-------hHHH
Confidence            7766654433322  443211      000000                    0   000000111111       1222


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHH
Q 042372          158 TTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGF  237 (402)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~  237 (402)
                      .....++..........+++.+.++.+..... +         .+.........+..+|.++++++.||+++|+.+.+..
T Consensus       237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~-~---------~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~  306 (410)
T TIGR00885       237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTA-G---------FAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYA  306 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCH-H---------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            22223333333445556677777654322211 1         1111333444566788889999999999999888877


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHH
Q 042372          238 LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISA  317 (402)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  317 (402)
                      .+..+++++....                     ..... ...+.+. +++....+|..++...+..+++.+..+.++..
T Consensus       307 ~~~~~~~ll~~~~---------------------~~~~~-~~~l~~~-glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~  363 (410)
T TIGR00885       307 IIGMALCLGSIFA---------------------GGHVG-LYCLTLC-SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM  363 (410)
T ss_pred             HHHHHHHHHHHHc---------------------CChHH-HHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence            6666665555442                     11112 2222222 23334445788888889998777655555555


Q ss_pred             HHHHHHHHHHHHhHHHHhhhcC----CCchhhhHHHHHH
Q 042372          318 AAGKAGAIVGAFGVQYYTQKGD----KQIKQSIIALAVV  352 (402)
Q Consensus       318 ~~~~~g~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~  352 (402)
                      ..  +|+.+.|.+.|.+.|..+    .+.+..|++..++
T Consensus       364 ~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       364 AI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            44  899999999999999531    0355666654333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.59  E-value=6.7e-13  Score=121.05  Aligned_cols=254  Identities=13%  Similarity=0.051  Sum_probs=160.5

Q ss_pred             HHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372            7 VIMSEYAN-KRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL   85 (402)
Q Consensus         7 ~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~   85 (402)
                      ++..|+.+ ++||.+..+.-+.+..+|.++...+...+...++++                ....||+..-.+.++++++
T Consensus       135 al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~----------------~~~~g~~~~~~~~~vi~~i  198 (467)
T COG2211         135 ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG----------------DKALGYQGTALVLGVIGVI  198 (467)
T ss_pred             hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------------cchhhHHHHHHHHHHHHHH
Confidence            44566664 789999999999999999988888888777665541                2377999999888888777


Q ss_pred             HHHHHhh-cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372           86 TYYWRMK-MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL  164 (402)
Q Consensus        86 ~~~~~~~-lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (402)
                      .++.+++ ++|.+..  .++.+.                          ..+....+.+..-..++   .++......++
T Consensus       199 ~~l~~~~~v~ER~~~--~~~~~~--------------------------~~~~~~~~~~~~~~~Nr---p~~~~l~~~l~  247 (467)
T COG2211         199 LLLFCFFNVKERVVE--TQPTKT--------------------------GVKLKLKDSFLLIFKNR---PLLLLLLMNLL  247 (467)
T ss_pred             HHHHHHHHhhcccCc--cccCcc--------------------------cccccHHHHHHHHHccc---hHHHHHHHHHH
Confidence            6665544 6665421  000000                          00111111111111122   22223333333


Q ss_pred             HHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHH
Q 042372          165 LDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSIC  243 (402)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~  243 (402)
                      .............+|.+. +|.++.....            .......+.+++.++..++++|+|+|+++.++.++.+++
T Consensus       248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~~------------~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~  315 (467)
T COG2211         248 LFIAFNIRGSIMVYYVTYVLGDPELFAYL------------LLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG  315 (467)
T ss_pred             HHHHHHHHhhhhheeEEEEcCChHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence            333444444444555543 4554443222            444555566666788999999999999999998888877


Q ss_pred             HHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-------hhhhhhhHHHH
Q 042372          244 MAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-------ARLRSTCHGIS  316 (402)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~  316 (402)
                      .+++.+..                    .+...++++..+....+.....+..|++.+|...       .+.-|...|..
T Consensus       316 ~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~  375 (467)
T COG2211         316 YLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM  375 (467)
T ss_pred             HHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence            77766642                    1222344444445455566667788999888753       34457778999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhcC
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKGD  339 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~~  339 (402)
                      .++..+|.+++..+.++.....+
T Consensus       376 tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         376 TFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999887653

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.59  E-value=4.2e-13  Score=124.87  Aligned_cols=330  Identities=12%  Similarity=-0.021  Sum_probs=193.7

Q ss_pred             hhHHhhhhccccch--hHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            5 SAVIMSEYANKRTR--GAFIAAVFAMQGMGILFAGVISLIFS--GIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         5 ~~~~i~e~~~~~~r--g~~~~~~~~~~~lG~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      ..++++|.+|+++|  +.+.++.+.+.++|.++++.+++...  ..++.. ..+.+         ...-.+.|..|++.+
T Consensus       135 ~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~F~i~a  204 (477)
T TIGR01301       135 CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFT-KTEAC---------GVSCANLKSCFLIDI  204 (477)
T ss_pred             HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc-ccccc---------ccccchHHHHHHHHH
Confidence            45789999998865  67899999999999999999998752  111110 00000         001236799999988


Q ss_pred             HHHHHHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHH
Q 042372           81 VPAALTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTT  159 (402)
Q Consensus        81 i~~~~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (402)
                      +..++.. +..++++|.|..  . .++.+++  +        .    ++.++ .+.+...++.++  ..++.++.+..++
T Consensus       205 ~~l~i~~l~t~~~v~E~~~~--~-~~~~~~~--~--------~----~~~~~-~~~~~~~~~i~~--~~~~mP~~m~~l~  264 (477)
T TIGR01301       205 ILLAILTYIALSAVKENPLI--G-SDDFINS--E--------A----APPSK-HGEEAFFGELFG--AFKYLPRPVWILL  264 (477)
T ss_pred             HHHHHHHHHHeeeeeccCCC--c-cccchhh--h--------c----ccccc-cchhhhHHHHHH--HHHHCCHHHHHHH
Confidence            8777654 455668997632  1 1110000  0        0    00000 000111112222  2233344566666


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhh--cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch-hHHHHHH
Q 042372          160 STWFLLDIAFYTINLTQKDIYPA--TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR-FIIQLGG  236 (402)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~  236 (402)
                      ...++.-++++.+..|...+..+  ++-++...  ..|+.....+........+...+.+++-.++.+|+|+ |....++
T Consensus       265 ~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~--~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s  342 (477)
T TIGR01301       265 LVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG--AKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIV  342 (477)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            66666666777777777777654  33222211  2355554555556666666666777788899999984 6777888


Q ss_pred             HHHHHHHHHHHHHhhccccCC-CCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh--hhhhhH
Q 042372          237 FLLMSICMAILGARYDSLRGK-KCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR--LRSTCH  313 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~  313 (402)
                      .++.+++++...+......+. ..+.++...  ..+.......++.....+.......+++++++++..|++  ..|..+
T Consensus       343 ~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~m  420 (477)
T TIGR01301       343 NIILAICLAATVLVTYVAKNSRYYDGDGESL--PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSM  420 (477)
T ss_pred             HHHHHHHHHHHHHHHhhhhcccccccccccc--CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchh
Confidence            777777776665443211000 000000000  000111122333333333334455568888999999854  448899


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCC
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNG  368 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~  368 (402)
                      |+.|.+..+.+++..+..+.+.+..+.+....+.+.++..+++.+..+++ |+++.
T Consensus       421 gilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       421 GVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999988888777665455677778888888888887755 87653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.58  E-value=6.1e-14  Score=130.71  Aligned_cols=183  Identities=11%  Similarity=0.006  Sum_probs=133.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH
Q 042372          152 GLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI  231 (402)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~  231 (402)
                      ++.++.+++.+++............|.+.+++|++..+.+.            ......++..++.+..|++.||+|||+
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~G~r~   74 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGL------------AATLFYAAYVICGIPSNIMLAIIGARR   74 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHH------------HHHHHHHHHHHHHhhHHHHHHHhChHH
Confidence            34555666666666666666777778777889999887665            666777778888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372          232 IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST  311 (402)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  311 (402)
                      .+..+.++.+++.++..+.                     ++.. .+.+..++.+.+..+..+....++.|.+|++.|+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~---------------------~~~~-~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~  132 (412)
T TIGR02332        75 WIAGIMVLWGIASTATMFA---------------------TGPE-SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRAR  132 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHh---------------------cCHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHH
Confidence            9999988888777776653                     2222 22333333344344445666677899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhhc----CCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQKG----DKQIKQSIIALAVVNFLGFLCSF-MVPETNG  368 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~  368 (402)
                      +.++.+....+|..+++.+.+++.+..    ..+|+..|++.++..++..++.+ ++||+++
T Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            999999999999999999988876421    11899999998877766555444 5577754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.58  E-value=2.2e-13  Score=129.34  Aligned_cols=258  Identities=11%  Similarity=0.008  Sum_probs=140.3

Q ss_pred             hHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            6 AVIMSEYA-NKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         6 ~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      .++..|.. ++++|.+..++...+..+|..+.+.+...+...++.                .....+|+....+.++..+
T Consensus       128 ~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~----------------~~~~~g~~~~~~i~~~~~~  191 (473)
T PRK10429        128 WSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG----------------GDRGFGFQMFTLVLIAFFI  191 (473)
T ss_pred             HhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CchhhhHHHHHHHHHHHHH
Confidence            35778988 589999999987777787766666555444322221                1133478888877776666


Q ss_pred             HHHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           85 LTYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        85 ~~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      +..+. .+..+|.+..    +..+.+                       ++++.+.++.++... ++  +.++......+
T Consensus       192 ~~~~~~~~~~~e~~~~----~~~~~~-----------------------~~~~~~~~~~~~~~~-~n--~~~~~ll~~~~  241 (473)
T PRK10429        192 VSTIITLRNVHEVYSS----DNQVSA-----------------------EGSHLTLKDIVALIY-KN--DQLSCLLGMAL  241 (473)
T ss_pred             HHHHHHHcCceecCCc----cccccc-----------------------cccCCCHHHHHHHHh-cC--HHHHHHHHHHH
Confidence            54433 3346764321    000000                       000112222222111 11  22333333333


Q ss_pred             HHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHH
Q 042372          164 LLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSIC  243 (402)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~  243 (402)
                      ......+....+.+++.+....+....            ........++.+++.++.++++||+|+|+.+.++..+..++
T Consensus       242 ~~~~~~~~~~~~~~y~~~y~~~~~~~~------------~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~  309 (473)
T PRK10429        242 AYNIASNIINGFAIYYFTYVIGDADLF------------PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLS  309 (473)
T ss_pred             HHHHHHHHHhhheeeEEEEECCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            333444444455555555432222221            11444455667778888999999999999988877655544


Q ss_pred             HHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-------hhhhhhhHHHH
Q 042372          244 MAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-------ARLRSTCHGIS  316 (402)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~  316 (402)
                      .+.+..... .. .              .+.+.. ++..+..+.+........+++.+|..+       .+..|...|..
T Consensus       310 ~~~~~~~~~-~~-~--------------~~~~~~-~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~  372 (473)
T PRK10429        310 CGVLLLMGL-AA-P--------------HNALLI-VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQ  372 (473)
T ss_pred             HHHHHHHhc-cC-c--------------hhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHH
Confidence            444322211 01 1              122222 222222222223333455667788754       33456678999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhc
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      ..+..++..+++.+.+.+.+..
T Consensus       373 ~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        373 TMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999887755

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.57  E-value=1.3e-13  Score=129.44  Aligned_cols=177  Identities=11%  Similarity=0.068  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .++..++.++......+....+.|.+.+++|++..+.+.            ......++..++.++.|++.||+|||+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~g~r~~~   91 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGL------------LATLFYITYGVSKFVSGIVSDRSNARYFM   91 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHhhhhHHHhhcCCchhH
Confidence            334444445554444556677789999999999886555            66777888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      .++.++.+++.++....                     .+.+.+.+.. +..+.+.....+....++.|.+|++.|+++.
T Consensus        92 ~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~-~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~  149 (434)
T PRK11663         92 GIGLIATGIINILFGFS---------------------SSLWAFALLW-VLNAFFQGWGWPVCAKLLTAWYSRTERGGWW  149 (434)
T ss_pred             HHHHHHHHHHHHHHHHH---------------------hHHHHHHHHH-HHHHHHHHccchHHHHHHHHhCCHHHHHHHH
Confidence            99988888777766553                     2222222222 2222222333455667889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH-hhcccC
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS-FMVPET  366 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~et  366 (402)
                      ++.+....+|..+++.+.+.+.+..  +|+..|.+.+++.++..+.. +++||+
T Consensus       150 ~~~~~~~~~g~~~~~~~~~~l~~~~--gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        150 AIWNTAHNVGGALIPLVVGAIALHY--GWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999988876  89999998877666544433 345654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.57  E-value=4.3e-14  Score=124.74  Aligned_cols=181  Identities=10%  Similarity=0.075  Sum_probs=140.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc
Q 042372          147 FVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR  226 (402)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr  226 (402)
                      ..|.+++.++.+++.+....+.--.+..-.|.+.++.+++..+.+.            +.+...+..-++-++.|.++||
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~------------i~s~f~i~YG~sKf~~G~~sDr   90 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGI------------LGSAFSITYGVSKFVMGVLSDR   90 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHhhhhccc
Confidence            3334444566666666666666666777889999999999998766            6666667777777889999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch
Q 042372          227 IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA  306 (402)
Q Consensus       227 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  306 (402)
                      .+.|..+-.++++++++.+++++.                     + +.....++..+.+.+...-.|.+...++..+|+
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs---------------------~-s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr  148 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFS---------------------P-SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR  148 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhh---------------------h-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc
Confidence            999999999999999999998885                     2 233333333344444444445677788999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhH--HHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          307 RLRSTCHGISAAAGKAGAIVGAFGV--QYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       307 ~~r~~~~~~~~~~~~~g~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +.||+..++-++..++|+.+.|.+.  +....+.  +|+..|++-++++++..++.+++
T Consensus       149 ~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~--~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         149 KERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG--GWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             cccCceEEEehhhhhcccchHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888  7777776  89999999999988877776654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.57  E-value=6.3e-14  Score=130.55  Aligned_cols=183  Identities=17%  Similarity=0.162  Sum_probs=134.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh
Q 042372          151 HGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF  230 (402)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr  230 (402)
                      +++.+...++.++......+......|.+.+++|.++.+.+.            ......++..++.++.|.++||+|||
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~Dr~g~r   77 (405)
T TIGR00891        10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAAS------------LISAALISRWFGALMFGLWGDRYGRR   77 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHH------------HHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            344566666677777777777777888888889998886555            66777888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372          231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS  310 (402)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  310 (402)
                      +.++.+.++.+++.++..+.                     .+. ....+..+..+.+.....+...+++.|.+|++.|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~  135 (405)
T TIGR00891        78 LPMVTSIVLFSAGTLACGFA---------------------PGY-ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN  135 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---------------------ccH-HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhh
Confidence            99998887777776665543                     222 22233333333334444556667889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      .+.++.+....+|.++++.+.+.+.+..+.+|+..|++.++..++..+....+||++
T Consensus       136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  192 (405)
T TIGR00891       136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE  192 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999998888776522489888876666555555444567754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.57  E-value=8e-14  Score=136.34  Aligned_cols=181  Identities=14%  Similarity=0.056  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .++.+.+..+....-...+...+|.+..++|.+..+.+.            +.+...++.++|.+++|+++||+|||+.+
T Consensus       168 l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~------------l~s~~~lG~iiG~li~G~LsDR~GRR~~l  235 (742)
T TIGR01299       168 LFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGM------------LGLIVYLGMMVGAFFWGGLADKLGRKQCL  235 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            333344444433333444556678777788888765444            66677888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      +++.++.+++.++..+.                     .+. ..+++..++.+++..+..+...+++.|.+|++.|+...
T Consensus       236 ii~lil~~i~~ll~afa---------------------~s~-~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~  293 (742)
T TIGR01299       236 LICLSVNGFFAFFSSFV---------------------QGY-GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHL  293 (742)
T ss_pred             HHHHHHHHHHHHHHHHH---------------------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            99887777776665543                     222 23333333444444445577888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcC-----------CCchhhhHHHHHHHHHHHHHHhhcccCCC
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGD-----------KQIKQSIIALAVVNFLGFLCSFMVPETNG  368 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~et~~  368 (402)
                      ++......+|.++++.+...+....+           .+|+..+++.++..++.+++.+++||+.+
T Consensus       294 g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPr  359 (742)
T TIGR01299       294 SWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPR  359 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            99999999999998877655543221           16888888877777777666667798743

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.54  E-value=2.1e-12  Score=122.11  Aligned_cols=311  Identities=11%  Similarity=0.097  Sum_probs=163.5

Q ss_pred             hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372            6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL   85 (402)
Q Consensus         6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~   85 (402)
                      ...++|..|.|+|+...++...........++.++..+.                       ...+|||.|++.++...+
T Consensus       152 ~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~-----------------------~~~~WRw~~~~~~i~~~i  208 (599)
T PF06609_consen  152 ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA-----------------------AHSGWRWIFYIFIIWSGI  208 (599)
T ss_pred             HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc-----------------------cCCCcchHHHHHHHHHHH
Confidence            345899999999988777665554444445566655543                       456899999998877665


Q ss_pred             HHHHHhhcCCCchhHhhhcC--CHHHHHHHHHHhh-------------ccc----cccccCCCCCCC-------------
Q 042372           86 TYYWRMKMPETARYTALVEG--NQKKAAVDMAKVL-------------DTD----INVATSAYPAPV-------------  133 (402)
Q Consensus        86 ~~~~~~~lpesp~~l~~~~~--~~~~~~~~~~~~~-------------~~~----~~~~~~~~~~~~-------------  133 (402)
                      .+++.++....|++-..+.+  .+.+..+++...-             +.+    ...+.+..+-..             
T Consensus       209 ~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~  288 (599)
T PF06609_consen  209 ALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFV  288 (599)
T ss_pred             HHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHH
Confidence            44433332222333111111  1222222222110             000    001111100000             


Q ss_pred             --CCCcc-cccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372          134 --SPEAS-TYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVA  209 (402)
Q Consensus       134 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  209 (402)
                        +.... ...++-.+.+++ .|.+....+..+.....+|....+.|..... ++.+.....         ..+......
T Consensus       289 ~wE~~~~~~~Pl~P~~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~---------~~~~~s~~~  358 (599)
T PF06609_consen  289 VWEWFGAPKDPLFPHRLFKD-RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISIT---------EIGWISSPV  358 (599)
T ss_pred             HhhhhccCCCCcCCHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccc---------eeehhhhhH
Confidence              00000 111222233332 2345555566666666778877777776554 333332100         111245556


Q ss_pred             Hhhhcccchhhhhhccccch-hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHh
Q 042372          210 LFATVPGYWFTVFLIDRIGR-FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFA  288 (402)
Q Consensus       210 ~i~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (402)
                      .++...|.++.|.+..+++| |+.++++.+.+.+++..++...   .++    +         +..+.+.++..+..   
T Consensus       359 ~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~---~~n----~---------~~~i~~~~l~g~gi---  419 (599)
T PF06609_consen  359 GFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR---PDN----K---------NAAIAFLVLAGFGI---  419 (599)
T ss_pred             HHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc---CCC----c---------chHHHHHHHHHHhH---
Confidence            66677777788888888877 4555566655554444433321   111    0         11222222222211   


Q ss_pred             hcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh-------------------------------
Q 042372          289 NFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK-------------------------------  337 (402)
Q Consensus       289 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-------------------------------  337 (402)
                       .+......+.+.-..|++.-+++.|+..++..+|+.++..++..+...                               
T Consensus       420 -G~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~  498 (599)
T PF06609_consen  420 -GGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEAL  498 (599)
T ss_pred             -HHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence             112223344455678889999999999999999999888665433210                               


Q ss_pred             ----------c-------------------CCCchhhhHHHHHHHHHHHHHHhhcccCCCC
Q 042372          338 ----------G-------------------DKQIKQSIIALAVVNFLGFLCSFMVPETNGL  369 (402)
Q Consensus       338 ----------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~et~~~  369 (402)
                                .                   ..+++.+|+....+..++.+..+++++.++.
T Consensus       499 ~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~  559 (599)
T PF06609_consen  499 AAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKY  559 (599)
T ss_pred             hccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHh
Confidence                      0                   0056788888888888888888888765543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.54  E-value=9e-13  Score=128.40  Aligned_cols=217  Identities=12%  Similarity=0.117  Sum_probs=123.3

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--cCcccccccccccCCCCCc--chhHHHH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVY--NAPAFNRNHVLSAQPQGDY--LWRIVLM   77 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~Wr~~f~   77 (402)
                      ++.+.+|+.|++|+++|+++++++..+..+|.++|+++++.+.+.+.+-.  +.+..+.++     ....|  +||..|+
T Consensus       190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~-----~dprWiGaWwl~Fl  264 (633)
T TIGR00805       190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTP-----TDPRWIGAWWIGFL  264 (633)
T ss_pred             hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCC-----CCccHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999875432100  000000000     00111  3888898


Q ss_pred             HhhHHHHHHHHHHhhcCCC-chhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHH
Q 042372           78 FGAVPAALTYYWRMKMPET-ARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLL  156 (402)
Q Consensus        78 ~~~i~~~~~~~~~~~lpes-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (402)
                      +.++++++..+..+++|+. |+.  . ++.+.+..+. ..   .+..+ .+.........+...+.++ ..+++  +.++
T Consensus       265 i~g~l~~l~~v~l~~~p~~lp~~--~-~~~~~~~~~~-~~---~~~~~-~~~~~~~~~~~~~~~~~~~-~Ll~n--~~f~  333 (633)
T TIGR00805       265 ICGGVALLTSIPFFFFPKALPKE--G-KRVNVDVHET-EK---LEKSE-DKSRKKNSDITKDFPKIIK-RLLCN--PIYM  333 (633)
T ss_pred             HHHHHHHHHHHHHHhCccccCCc--c-cccchhhhhh-hc---ccccc-cccchhhhhhHHHHHHHHH-HHHcC--cHHH
Confidence            8888777765555666654 321  0 0000000000 00   00000 0000000000000111111 11222  3556


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHh-hhcccchhhhhhccccc--hhHH
Q 042372          157 GTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALF-ATVPGYWFTVFLIDRIG--RFII  232 (402)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~g~~~~g~l~dr~g--rr~~  232 (402)
                      ...+..+.....+++...|+|.++++ +|+++..++.            +.....+ +.++|.+++|+++||++  .|+.
T Consensus       334 ~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~------------l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~  401 (633)
T TIGR00805       334 LVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANF------------LIGVVNLPAAGLGYLIGGFIMKKFKLNVKKA  401 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH------------HhhhhhhhHHHHHHhhhhheeeeecccHHHH
Confidence            66666666777788888999999986 8888876544            4433333 55778889999999998  4566


Q ss_pred             HHHHHHHHHHHHHH
Q 042372          233 QLGGFLLMSICMAI  246 (402)
Q Consensus       233 ~~~~~~~~~~~~~~  246 (402)
                      +..+.+...+..+.
T Consensus       402 ~~~~~~~~~~~~~~  415 (633)
T TIGR00805       402 AYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66665555554433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.54  E-value=2.9e-13  Score=125.44  Aligned_cols=178  Identities=13%  Similarity=0.062  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII  232 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  232 (402)
                      +....+.+..+......+......|.+.+++|+++.+.+.            ......++..++.++.|.++||+|||+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~Dr~grr~~   87 (394)
T PRK10213         20 SAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQ------------SVTVTAFVAMFASLFITQTIQATDRRYV   87 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhcccCcHHH
Confidence            3344444444444444455555678888889999886554            5566677778888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC  312 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  312 (402)
                      ++.+.++.+++.+.....                     .+.+.+. +..+..+.+.....+....++.|.+|++.|+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~---------------------~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a  145 (394)
T PRK10213         88 VILFAVLLTLSCLLVSFA---------------------NSFSLLL-IGRACLGLALGGFWAMSASLTMRLVPPRTVPKA  145 (394)
T ss_pred             HHHHHHHHHHHHHHHHHH---------------------ChHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHH
Confidence            999988888777665553                     2222333 333333333333445666778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccC
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPET  366 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et  366 (402)
                      .++......++..++|.+.+.+.+..  +|+..|++.+++.++..+... .+||+
T Consensus       146 ~~~~~~~~~~g~~ig~~l~~~l~~~~--gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        146 LSVIFGAVSIALVIAAPLGSFLGELI--GWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999998877  899999988776666554443 34664

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.53  E-value=2.1e-13  Score=126.21  Aligned_cols=173  Identities=15%  Similarity=0.089  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      ..+.............|.+.+++|.++.+.+.            ......++..++.++.|+++||+|||+.+..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~   80 (385)
T TIGR00710        13 LSILGPLGIDMYLPAFPEIAADLSTPASIVQM------------TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIF   80 (385)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            33333444444555567788889998886555            677777888888999999999999999999988877


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .++.+.....                     ++.+. ..+..+..+.+.....+....+..|.+|++.|+++.++.+...
T Consensus        81 ~~~~~~~~~~---------------------~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (385)
T TIGR00710        81 ALSSLGLALS---------------------NNIET-LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVL  138 (385)
T ss_pred             HHHHHHHHHH---------------------ccHHH-HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            7777665553                     22222 2222333333333334556677899999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCCC
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNGL  369 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~~  369 (402)
                      .+|..+++.+.+.+.+..  +|+..+++.+++.++..+..++ .||++.+
T Consensus       139 ~~g~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       139 ALAPAVAPLLGGYILVWL--SWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999888876  8999998888777776665554 4765443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.52  E-value=1.5e-13  Score=127.45  Aligned_cols=164  Identities=16%  Similarity=0.133  Sum_probs=123.0

Q ss_pred             HHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042372          169 FYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILG  248 (402)
Q Consensus       169 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  248 (402)
                      .+......|.+.+++|.++.+.+.            ......++..++.++.|+++||+|||+.+..+.++.+++..+..
T Consensus        10 ~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   77 (399)
T TIGR00893        10 RANLSFAAPMLQEDLGLSAAQYGY------------VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA   77 (399)
T ss_pred             HHhhhHhHHHHHHhhCCChhhHHH------------HHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence            344555567777788988876555            77778888888999999999999999999988887777776665


Q ss_pred             HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372          249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA  328 (402)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~  328 (402)
                      ..                     .+. ....+.....+.+.....+....++.|.+|++.|+.+.++.+....+|..+++
T Consensus        78 ~~---------------------~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  135 (399)
T TIGR00893        78 FA---------------------GAY-VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGG  135 (399)
T ss_pred             HH---------------------cCH-HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHH
Confidence            53                     222 22333333333334445566777889999999999999999999999999999


Q ss_pred             HhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372          329 FGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNG  368 (402)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~  368 (402)
                      .+.+.+.+..  +|+..|.+.+++.++..+..++ .||++.
T Consensus       136 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       136 PLVGWILIHF--SWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHHhC--CchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            9999888776  8999999888877766665554 365543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.52  E-value=3.5e-13  Score=124.98  Aligned_cols=175  Identities=13%  Similarity=0.094  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHH
Q 042372          156 LGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLG  235 (402)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~  235 (402)
                      +.+.+..+......+......|.+.+++|.++.+.+.            ......++..++.+..|.+.||+|||+++..
T Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   79 (390)
T PRK03545         12 VTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGL------------MLTIYAWVVALMSLPLMLLTSNVERRKLLIG   79 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            3333333333333444445578888889999887555            5556666677777788999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHH
Q 042372          236 GFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGI  315 (402)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  315 (402)
                      +..+.+++.+.....                     ++.+.+ .+..+..+.+.....+....+..|.+|++.|+.+.|+
T Consensus        80 ~~~~~~~~~~~~~~~---------------------~~~~~l-~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~  137 (390)
T PRK03545         80 LFVLFIASHVLSALA---------------------WNFTVL-LISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSL  137 (390)
T ss_pred             HHHHHHHHHHHHHHh---------------------ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHH
Confidence            988877777666553                     222222 2222333332333344556677999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccC
Q 042372          316 SAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPET  366 (402)
Q Consensus       316 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et  366 (402)
                      ......+|..++|.+.+.+.+..  +|+..|++.+++.++..+..+. +||.
T Consensus       138 ~~~~~~~g~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        138 LATGTALAMVLGLPLGRVIGQYL--GWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999888877  9999999988887776655443 4654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.51  E-value=2.1e-12  Score=121.17  Aligned_cols=250  Identities=14%  Similarity=0.088  Sum_probs=155.6

Q ss_pred             hHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCC-cchhHHHHHhhHHH
Q 042372            6 AVIMSEYAN-KRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGD-YLWRIVLMFGAVPA   83 (402)
Q Consensus         6 ~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Wr~~f~~~~i~~   83 (402)
                      .++..|.++ +++|.+..+.-..+..+|.++...+...+...+++.                 .. .+|++..++.+++.
T Consensus       125 ~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~-----------------~~~~~~~~~~~v~~iv~  187 (428)
T PF13347_consen  125 NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGG-----------------DTSNGYRWMALVLAIVG  187 (428)
T ss_pred             hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-----------------ccchHHHHHHHHHHHHH
Confidence            467788887 578999999999999999987777777666444321                 22 38999999887777


Q ss_pred             HHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           84 ALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        84 ~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      ++..+ ..+.++|.++.     ..++                         +++.+.++.++....++   .+.......
T Consensus       188 ~v~~~i~~~~~ke~~~~-----~~~~-------------------------~~~~~~~~~~~~~~~nr---~~~~l~~~~  234 (428)
T PF13347_consen  188 LVFFLITFFFVKERSVE-----VTEQ-------------------------EKKISLRDSLRSLFRNR---PFRILLLAF  234 (428)
T ss_pred             HHHhhhhhheeeecccc-----cccc-------------------------ccccccccchhhhcccc---hHHHHHHHH
Confidence            76544 44556772110     0000                         00112222222222222   122222233


Q ss_pred             HHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  241 (402)
                      ++............+++.+. .+.+ ..            .........++.+++.++.++++||+|+|+.+..+.++.+
T Consensus       235 ~~~~~~~~~~~~~~~y~~~~vl~~~-~~------------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~  301 (428)
T PF13347_consen  235 FLQWLAFALMNTFLPYYFTYVLGNE-GL------------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAA  301 (428)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHhcCc-hh------------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHH
Confidence            33333333333344555554 3333 21            1125556677788888899999999999999999998888


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch-------hhhhhhHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA-------RLRSTCHG  314 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~  314 (402)
                      ++.+++.+...                    .......+.....+.+........+++.+|..+.       +..|...|
T Consensus       302 ~~~~~~~~~~~--------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s  361 (428)
T PF13347_consen  302 LGFLLLFFLGP--------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS  361 (428)
T ss_pred             HHHHHHHHHHh--------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence            88777666421                    1223333444444444455556788888998763       34588899


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhc
Q 042372          315 ISAAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       315 ~~~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      +......++..+++.+.+.+.+..
T Consensus       362 ~~~~~~k~~~~la~~i~g~~l~~~  385 (428)
T PF13347_consen  362 VNSFFIKIGQGLAGAIVGLLLALV  385 (428)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988887665

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.51  E-value=5.7e-13  Score=124.48  Aligned_cols=174  Identities=17%  Similarity=0.127  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-chh
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-GRF  230 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-grr  230 (402)
                      +.++.++...+...+.+|++..++|.|+.+ +|+++.+.+.            ..........++.+++|+++||+ |||
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~------------i~~~~~~~~~l~~ligG~LaDRilGrr   76 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYE------------LFSAYCSLVYVTPILGGFLADKVLGNR   76 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence            456666666677778899999999999875 7888876544            55556666677788999999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh--h
Q 042372          231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR--L  308 (402)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~  308 (402)
                      +.++++.++..++.+++....                    ...........+. ..+.....+...++++|.+|++  .
T Consensus        77 r~iliG~il~~lg~lll~~~~--------------------~~~~~~~l~l~li-~iG~G~~~~~~~alv~elfp~~~~~  135 (493)
T PRK15462         77 MAVMLGALLMAIGHVVLGASE--------------------IHPSFLYLSLAII-VCGYGLFKSNVSCLLGELYEPTDPR  135 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--------------------cchhHHHHHHHHH-HHhcccccccHHHHHHHHCCCCCcc
Confidence            999999888777766554311                    0101111111111 1112222344556789999975  7


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372          309 RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       309 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (402)
                      |+++.++.+...++|++++|.+.+++.+..  +|+..|.+.++..+++.+..+
T Consensus       136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEY--SWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             ccceehHHHHHHHHHHHHHHHHHHHHHhhh--ChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998877  899999887666555555544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.51  E-value=3.7e-13  Score=125.52  Aligned_cols=182  Identities=14%  Similarity=0.098  Sum_probs=130.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch
Q 042372          150 KHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR  229 (402)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr  229 (402)
                      +++......+...+......+......|.+.+++|.++.+.+.            ......++..++.++.|+++||+||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~   79 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGW------------AFSAGILGLLPGALLGGRLADRIGR   79 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3334555555566666666667777788888889998886555            7777788888899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhh
Q 042372          230 FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLR  309 (402)
Q Consensus       230 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  309 (402)
                      |+.+..+.++..++.++....                     .+.+.. .+.....+.+.....+....++.|.+|++.|
T Consensus        80 r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r  137 (406)
T PRK11551         80 KRILIVSVALFGLFSLATAQA---------------------WDFPSL-LVARLLTGVGLGGALPNLIALTSEAVGPRLR  137 (406)
T ss_pred             chhHHHHHHHHHHHHHHHHHh---------------------ccHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHH
Confidence            999999887766665554442                     222222 2233333333333445566788999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          310 STCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       310 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      +++.++.+....+|..+++.+.+.+.+..  +|+..|++.+++.++..++.. ++||+.
T Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        138 GTAVSLMYCGVPFGGALASVIGVLAAGDA--AWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccc--CHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999998887777665  899888887776665554444 457754

>PRK10054 putative transporter; Provisional

Probab=99.51  E-value=5.6e-13  Score=123.52  Aligned_cols=176  Identities=11%  Similarity=-0.027  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      ++.+....++...+.+....++|.+++ ++|++..+.+.            ......++.+++.++.|+++||+|||+.+
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~   76 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGY------------AMTIALTIGVVFSLGFGILADKFDKKRYM   76 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcCcchhH
Confidence            444445555666667777777777775 48999887655            66666777778888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      +++.++..++.+.+.+.                     ++.+..++...+. +.......+....+..|.+|++.|+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (395)
T PRK10054         77 LLAITAFASGFIAIPLV---------------------NNVTLVVLFFALI-NCAYSVFSTVLKAWFADNLSSTSKTKIF  134 (395)
T ss_pred             HHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHhHHHHHH
Confidence            88887776666555443                     2222222222222 2222233445667778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      ++.+....+|.+++|.+.+.+.. .  +|+.+|.+.+++.++..+... ++||.+
T Consensus       135 g~~~~~~~lg~~igp~l~~~l~~-~--g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        135 SLNYTMLNIGWTVGPPLGTLLVM-Q--SINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-h--ccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999998875 3  899999988877777655544 345543

>PRK09669 putative symporter YagG; Provisional

Probab=99.51  E-value=3e-12  Score=120.70  Aligned_cols=249  Identities=13%  Similarity=0.064  Sum_probs=136.1

Q ss_pred             HHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372            7 VIMSEYA-NKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL   85 (402)
Q Consensus         7 ~~i~e~~-~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~   85 (402)
                      ++.+|+. ++++|++..++...+..+|..+++.+...+...++.                .....+|+..+.+.++.+++
T Consensus       132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~----------------~~~~~g~~~~~~i~~ii~~v  195 (444)
T PRK09669        132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGK----------------GDEQKGYFYAMMVMGLLGVV  195 (444)
T ss_pred             HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CchhhhHHHHHHHHHHHHHH
Confidence            5778888 568899999999888899888888776655543321                11356899988887776665


Q ss_pred             HHHH-HhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372           86 TYYW-RMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL  164 (402)
Q Consensus        86 ~~~~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (402)
                      ..+. .+..+|.++.     ++ ++                          +.+.++.++....++.   ++......+.
T Consensus       196 ~~~~~~~~~~e~~~~-----~~-~~--------------------------~~~~~~~~~~~~~n~~---~~~l~~~~~~  240 (444)
T PRK09669        196 LFFCCFFMTKERYTP-----EV-DN--------------------------SSSVWKDLKLLLGNSQ---WRIMFIFNVV  240 (444)
T ss_pred             HHHHHhCCeEEecCC-----CC-cC--------------------------CCCHHHHHHHHhCCch---HHHHHHHHHH
Confidence            5443 3334553210     00 00                          0111111111111121   2222222222


Q ss_pred             HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372          165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM  244 (402)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  244 (402)
                      ............+++.+.. +...+           ..........+..+++.++.++++||+|+|+.+..+.++.+++.
T Consensus       241 ~~~~~~~~~~~~~y~~~~~-~~~~~-----------~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~  308 (444)
T PRK09669        241 LLTAVVTRGGATLYYVNYV-LLRPD-----------LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILS  308 (444)
T ss_pred             HHHHHHHHhhhhheeeeee-cCCHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            2122222222223333322 22121           11113344556667777889999999999999887765544433


Q ss_pred             HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-------hhhhhhhHHHHH
Q 042372          245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-------ARLRSTCHGISA  317 (402)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~  317 (402)
                      ..+...    ..               .+.+.. .+..+..+.+.....+..+++.+|..+       .+..|...|+.+
T Consensus       309 ~~~~~~----~~---------------~~~~~~-~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~  368 (444)
T PRK09669        309 ALIFFI----PP---------------SNVWLI-FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNL  368 (444)
T ss_pred             HHHHHh----Cc---------------chHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHH
Confidence            222221    00               122222 222223333344445677778888775       234567788999


Q ss_pred             HHHHHHHHHHHHhHHHHhhhc
Q 042372          318 AAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       318 ~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      .+..+|..+++.+.+.+.+..
T Consensus       369 ~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        369 FAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999988766

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.49  E-value=8.4e-13  Score=117.95  Aligned_cols=176  Identities=17%  Similarity=0.131  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII  232 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  232 (402)
                      ...+.+.+..|.....-+.....+|.+.++++.+...++.            ..+.+.++..++.++...+.||+.||++
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~------------lis~yAl~~ai~ap~l~~lt~r~~Rr~l   80 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQ------------LITAYALGVALGAPLLALLTGRLERRRL   80 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            3567777888888888889999999999999999987766            8888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC  312 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  312 (402)
                      ++....++.++.++..+.                      .++....+..+..+.......++..++..++.|+++|+++
T Consensus        81 Ll~~l~lFi~~n~l~alA----------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~A  138 (394)
T COG2814          81 LLGLLALFIVSNLLSALA----------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRA  138 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhH
Confidence            999999999998888875                      2234444455555555555666778888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cc
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VP  364 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  364 (402)
                      .++..+...++..+|..+..++-+..  |||.+|++.+++.++..+..+. +|
T Consensus       139 iaiv~~G~tlA~v~GvPLGt~ig~~~--GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         139 LALVFTGLTLATVLGVPLGTFLGQLF--GWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999998  9999999999999998887774 48

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.49  E-value=1e-12  Score=124.41  Aligned_cols=176  Identities=11%  Similarity=-0.021  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh---cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc-cc
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPA---TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR-IG  228 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr-~g  228 (402)
                      +.++.+....++..+.+|+...++|.|+++   +|++..+.+.            ......++..++.+++|+++|| +|
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~------------~~~~~~~~~~~~~~~~G~laDr~~G   77 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFI------------IFGAYSALVYLLTSVGWWFGDRVWG   77 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH------------HHHHHHHHHHHHHhhHHHHHHhhcc
Confidence            355666667777778889999999999875   6888776554            6777778888889999999999 89


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh-
Q 042372          229 RFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR-  307 (402)
Q Consensus       229 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-  307 (402)
                      ||++++++.++.+++.+++...                     .+..... +.....+.+.....+...++.++.+|++ 
T Consensus        78 ~~~~l~~~~~~~~~g~~~~~~~---------------------~~~~~~~-~~~~l~g~g~g~~~~~~~~~~a~~~~~~~  135 (475)
T TIGR00924        78 TKKTMVLGGIVLMLGHFMLAMS---------------------IYPDLIF-YGLGTIAVGSGLFKANPSSMVGKLYERGD  135 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc---------------------ccHhHHH-HHHHHHHhccccccCCHHHHHHHhcCCCC
Confidence            9999999998888877766653                     1111222 2222233333334456667778999875 


Q ss_pred             --hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          308 --LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       308 --~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                        .|+.+.++.+...++|.+++|.+.+++.+..  +|+..|.+.++..+++.+..++.+
T Consensus       136 ~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~--g~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       136 MPRRDGGFTLFYMSINIGSFISPLLAGVIAENY--GYHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             cccccceehhHHHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHcc
Confidence              4888999999999999999999999998877  899999887766666555544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.49  E-value=2.2e-13  Score=125.57  Aligned_cols=167  Identities=11%  Similarity=0.031  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372          165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM  244 (402)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  244 (402)
                      ............|.+.+++|.+..+.+.            ......++..++.++.|+++||+|||+.++.+.++..++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   74 (379)
T TIGR00881         7 YYLVRKNFALAMPYLVEEIGLSKTDLGL------------LLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVN   74 (379)
T ss_pred             HHHhHHhhhhhhHHHHHHhCCCHhHHHH------------HHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHH
Confidence            3344455566678777888998886555            7777788888899999999999999999999988887777


Q ss_pred             HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372          245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA  324 (402)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  324 (402)
                      ++....                     .+. ....+..+..+.+.....+...++..|.+|++.|+.+.++.+....+|.
T Consensus        75 ~~~~~~---------------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  132 (379)
T TIGR00881        75 LFFGFS---------------------TSL-WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGG  132 (379)
T ss_pred             HHHHHh---------------------hhH-HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHH
Confidence            766654                     222 2333333333444444556777888999999999999999999999999


Q ss_pred             HHHH-HhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          325 IVGA-FGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       325 ~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      .+++ .+...+.+..  +|+..|++.+++.++..++.+ +.||++
T Consensus       133 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       133 GLLPPLVLFGIAELY--SWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            9999 4555555554  889988888777666555544 346543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.49  E-value=6.6e-13  Score=124.65  Aligned_cols=163  Identities=14%  Similarity=0.146  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .+....+.++......+......|.+.+++|.++.+.+.            ......++..++.++.|+++||+|||+.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~------------~~~~~~~~~~l~~~~~g~l~dr~g~r~~l   86 (426)
T PRK12307         19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAF------------LATAAFIGRPFGGALFGLLADKFGRKPLM   86 (426)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            445555555555566666667778888889998876554            66677788888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      .++.++.+++.++..+.                     .+. ....+...+.+.+..+..+....++.|.+|++.|+++.
T Consensus        87 ~~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~  144 (426)
T PRK12307         87 MWSIVAYSVGTGLSGLA---------------------SGV-IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKAS  144 (426)
T ss_pred             HHHHHHHHHHHHHHHHH---------------------hHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhh
Confidence            99988888887766653                     222 23333333334433444556667789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHH
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVV  352 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (402)
                      ++......+|.++++.+.+.+.+..  +|+..|++....
T Consensus       145 ~~~~~~~~lg~~~~~~l~~~l~~~~--~w~~~f~i~~~~  181 (426)
T PRK12307        145 AFLVSGFGIGNIIAAYFMPSFAEAY--GWRAAFFVGLLP  181 (426)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHcccC--CHHHHHHHHHHH
Confidence            9999999999999998888887766  899988875433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.49  E-value=3.5e-12  Score=120.88  Aligned_cols=144  Identities=12%  Similarity=0.020  Sum_probs=85.2

Q ss_pred             HHHHhhhcccchhhhhhccccchhH-------HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHH
Q 042372          207 LVALFATVPGYWFTVFLIDRIGRFI-------IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMI  279 (402)
Q Consensus       207 ~~~~i~~~~g~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (402)
                      ....+..++.+++.+++.||+++|+       -+.+|+++.+++++.+..........+ .          ..+.++. +
T Consensus       316 ~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~-~----------~~s~~~~-i  383 (489)
T PRK10207        316 ALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQ-G----------LTSPWFI-V  383 (489)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-C----------ccCHHHH-H
Confidence            3344445556667789999999886       356676666666544432111011000 0          0222333 3


Q ss_pred             HHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc--------CCCchhhhHHHHH
Q 042372          280 LYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG--------DKQIKQSIIALAV  351 (402)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~  351 (402)
                      ...+..+.+.....+....++.+..|++.++.++|+.+....+|+.++..+........        ...+...|...++
T Consensus       384 ~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  463 (489)
T PRK10207        384 LVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGL  463 (489)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHH
Confidence            33333344445555667778889999999999999999999999999887775442100        0023456666666


Q ss_pred             HHHHHHHHHhh
Q 042372          352 VNFLGFLCSFM  362 (402)
Q Consensus       352 ~~~~~~~~~~~  362 (402)
                      ..+++.++.+.
T Consensus       464 ~~~~~~v~~~~  474 (489)
T PRK10207        464 VTLGVAVVMAL  474 (489)
T ss_pred             HHHHHHHHHHH
Confidence            66655555544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.48  E-value=1e-12  Score=125.50  Aligned_cols=179  Identities=15%  Similarity=0.083  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII  232 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  232 (402)
                      ..+..+++..+.............|.+.++++.+..+.+.            ....+.++...+.+..|+++||+|||+.
T Consensus         6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~------------~~~~~~l~~~~~~~~~G~l~D~~Grk~~   73 (495)
T PRK14995          6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLW------------IIDIYSLVMAGMVLPMGALGDRIGFKRL   73 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3455555666666666666777789999998888776544            4455566666667789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRST  311 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~  311 (402)
                      ++++..+..++.++.+..                     ++.+.+ ++...+.+.+..+..+.......+.+ |++.|++
T Consensus        74 l~~~~~~~~~~~~~~~~a---------------------~~~~~l-i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~  131 (495)
T PRK14995         74 LMLGGTLFGLASLAAAFS---------------------PTASWL-IATRALLAIGAAMIVPATLAGIRATFTEEKQRNM  131 (495)
T ss_pred             HHHHHHHHHHHHHHHHHc---------------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999998888887776653                     222223 33333333333333344444444554 7899999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      +.|+......+|..++|.+.+.+.+..  +|++.|++...+.++..++.+ ++|+.+
T Consensus       132 ~~g~~~~~~~~g~~~gp~lgg~l~~~~--gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        132 ALGVWAAVGSGGAAFGPLVGGILLEHF--YWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999887  999999988777776665555 446644

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.48  E-value=4.4e-13  Score=128.10  Aligned_cols=178  Identities=12%  Similarity=0.113  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      ++.+....+.............|.+.+++|.+..+.+.            ......++.+++.++.|+++||+|||+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~   71 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQW------------VITSYMLANAISIPLTGWLAKRFGTRRLFL   71 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhH------------HHHHHHHHHHHHHHhHHHHHHHhCcHHHHH
Confidence            34444455555555566667789899999988776554            667777888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      .+.++..++.++....                     .+. ...++.....+.+.....+....++.|.+|++.|+.+.+
T Consensus        72 ~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  129 (485)
T TIGR00711        72 ISTFAFTLGSLLCGVA---------------------PNL-ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMA  129 (485)
T ss_pred             HHHHHHHHHHHHHhCc---------------------CCH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHH
Confidence            9988777776665442                     222 233333344444444455667788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372          315 ISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNG  368 (402)
Q Consensus       315 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~  368 (402)
                      +......+|..++|.+.+++.+..  +|+..|++.+.+.++..++.++ +||.++
T Consensus       130 ~~~~~~~~g~~~g~~~~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       130 IWGLTVLVAPALGPTLGGWIIENY--HWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHHHHHHhhhhhccHhHhccCc--CceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            999999999999999999998876  8999999887777766655554 466443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.48  E-value=1.2e-12  Score=125.44  Aligned_cols=149  Identities=20%  Similarity=0.146  Sum_probs=108.2

Q ss_pred             HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372          204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL  283 (402)
Q Consensus       204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (402)
                      .......++.+++.++.|+++||+|||+.+.++.++..++.++.......  ..              ......+++..+
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~~--------------~~~~~~~~~~r~  123 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--SP--------------KSVMATLCFWRF  123 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--cc--------------chHHHHHHHHHH
Confidence            36777788889999999999999999999998888777776655543110  00              111233444444


Q ss_pred             HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh---------------------cCCCc
Q 042372          284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK---------------------GDKQI  342 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~---------------------~~~~~  342 (402)
                      ..+++..+..+....+.+|.+|++.|+++.++.+....+|..+++.+...+...                     ...+|
T Consensus       124 l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W  203 (502)
T TIGR00887       124 WLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMW  203 (502)
T ss_pred             HHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccH
Confidence            445545555667788999999999999999999999999999888777654321                     01169


Q ss_pred             hhhhHHHHHHHHHHHHHHhhcccCCC
Q 042372          343 KQSIIALAVVNFLGFLCSFMVPETNG  368 (402)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~et~~  368 (402)
                      +..+.+.++..++..++.+++||+.+
T Consensus       204 R~~~~~~~ip~~i~~~~~~~lpESpr  229 (502)
T TIGR00887       204 RILIGFGAVPALLALYFRLTIPETPR  229 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            99998877777776666667899854

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.48  E-value=3e-12  Score=121.00  Aligned_cols=164  Identities=12%  Similarity=0.009  Sum_probs=107.8

Q ss_pred             HHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372          171 TINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR  250 (402)
Q Consensus       171 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  250 (402)
                      .+....|.+.++ |++..+.+.            ......++..++.++.|+++||+|||++++++.++.+++.+++.+.
T Consensus        47 ~~~~~~p~l~~~-g~s~~~~g~------------~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~  113 (452)
T PRK11273         47 NFALAMPYLVEQ-GFSRGDLGF------------ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV  113 (452)
T ss_pred             HHHHhhHHHHHc-CCCHHHHHH------------HHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhh
Confidence            345566776666 888876554            6777788888899999999999999999999988777777666553


Q ss_pred             hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHH-HHHH
Q 042372          251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAI-VGAF  329 (402)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~-i~~~  329 (402)
                      ...   .              .+. ....+.....+.+.....+.....+.|.+|++.|+++.++.+....+|+. .++.
T Consensus       114 ~~~---~--------------~~~-~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l  175 (452)
T PRK11273        114 PWA---T--------------SSI-AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL  175 (452)
T ss_pred             hcc---c--------------ccH-HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            210   0              112 22222222222223333344445668899999999999999888888764 4554


Q ss_pred             hHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          330 GVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      .........  +|+..|++.+++.++..++.+ ++||+.
T Consensus       176 ~~~~~~~~~--gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        176 FLLGMAWFN--DWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            432332222  899999988877666554444 457654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.48  E-value=4.2e-13  Score=116.54  Aligned_cols=283  Identities=14%  Similarity=0.110  Sum_probs=144.3

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      .++.++++|..++|+|++.++.++...++|.++||.+|+++......                 ...+-.-.+-++..+.
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~-----------------~g~~p~alP~~~v~i~  201 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSI-----------------SGSYPFALPCLLVFIL  201 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhh-----------------hccCchHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999741100                 0222222223334444


Q ss_pred             HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhh----HHHHH
Q 042372           83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHG----LHLLG  157 (402)
Q Consensus        83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  157 (402)
                      +.. ..+..+++||+-+-    +++.++. ..+.+..+.+  .   +       ..+..+.++....|+..    ...+.
T Consensus       202 a~~~v~~~~~~lpETL~~----rk~~~~~-~~~~~~~~~~--~---~-------~~~~~~~~~v~~lrn~p~~~~i~~~~  264 (451)
T KOG2615|consen  202 AAGDVTFFPWFLPETLPL----RKRNDEH-STLQEAADDR--L---A-------LLKFARIFKVAALRNPPLLDFISVLR  264 (451)
T ss_pred             HHHHHHHHHHhCCccccc----hhhcccc-cchhhhhhhh--h---h-------hcchhhhhhhhhhcCccccchHHHHH
Confidence            444 45566789998321    1111110 0000000000  0   0       00000111111111000    01111


Q ss_pred             H-HHHHHHHHHHHHHHHHhHhhhh--hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc--hhHH
Q 042372          158 T-TSTWFLLDIAFYTINLTQKDIY--PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG--RFII  232 (402)
Q Consensus       158 ~-~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~  232 (402)
                      . .+..+.....+ ....+.+..+  +.+|+++.+.+.            +.+..++...+.........||..  -+-.
T Consensus       265 i~~l~~~ly~~l~-s~~~~t~~~l~~~rfg~ss~~~G~------------vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~  331 (451)
T KOG2615|consen  265 IFGLHYFLYLELF-SGLENTVLFLTHGRFGYSSMQQGK------------VLSTTGLLMLVIQLALVPILPRYKGNIKAV  331 (451)
T ss_pred             HHHHHHHHHHHHH-HHHHhhHHHhhcCccCCChhhhee------------eeehhhHHHHHHHHhccccccccccchhhH
Confidence            1 11122222222 2222223333  458999888665            555555555554444455556654  3334


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC  312 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  312 (402)
                      +..+...+.-..+++...                     ... ..+.....+..+.+....+....++....|.+.||+.
T Consensus       332 l~~~l~~~vP~~llls~~---------------------~~~-~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~  389 (451)
T KOG2615|consen  332 LLFSLLLIVPAFLLLSLA---------------------RTP-VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTL  389 (451)
T ss_pred             HHHHHHHHHHHHHHHhcc---------------------ccc-hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHH
Confidence            433333222222222221                     111 2222222222232333344556677888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHH
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFL  355 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (402)
                      +|+....+.++.++||.+.|....+.. +-+.++...+.+.++
T Consensus       390 ~Gi~~Sl~alaRaiGPlv~g~i~~Ws~-~~~~a~~~~~~L~~~  431 (451)
T KOG2615|consen  390 NGIFRSLGALARAIGPLVSGVIFSWSQ-GAQPAYIAWGALLLI  431 (451)
T ss_pred             HHHHHHHHHHHHHhhhhhhheeEEEec-CCCceeeehHHHHHH
Confidence            999999999999999999988876543 233344333333333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.48  E-value=1.6e-12  Score=123.38  Aligned_cols=176  Identities=9%  Similarity=-0.001  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .+.......+......+....+.|.+.+++|++..+.+.            ......++..++.++.|+++||+|||+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~G~r~~~  104 (476)
T PLN00028         37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGN------------AGIASVSGSIFSRLAMGPVCDLYGPRYGS  104 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            344444444444455566667778888889998876544            55566777788888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      ..+.++.+++.++.+..                     .+...+.+ ..++.+++..... ....+++|.+|++.|+.+.
T Consensus       105 ~~~~~~~~~~~~~~~~~---------------------~s~~~l~~-~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~  161 (476)
T PLN00028        105 AFLLMLTAPAVFCMSLV---------------------SSATGFIA-VRFFIGFSLATFV-SCQYWMSTMFNGKIVGTAN  161 (476)
T ss_pred             HHHHHHHHHHHHHHHHh---------------------cCHHHHHH-HHHHHHHHHHhhH-HHHHHHHHhcChhheeHHH
Confidence            88877777766655543                     22222222 2222222222222 2334678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhh---c----CCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQK---G----DKQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                      |+.+....+|..+++.+.+.+...   .    ..+|+..|++.+++.++..+..++++
T Consensus       162 g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        162 GIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            999988888888887666554321   0    01799999998888877666666554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.47  E-value=1.9e-12  Score=122.72  Aligned_cols=178  Identities=9%  Similarity=0.009  Sum_probs=124.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc-cc
Q 042372          151 HGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR-IG  228 (402)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr-~g  228 (402)
                      +++.++.+++..+...+.+|+...+++.|+++ +|++..+...            .............+++|+++|| +|
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~------------i~~~~~~~~~~~~~~~G~laDr~~G   79 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFI------------TFGAFAALVYGLISIGGYVGDHLLG   79 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHhhHHHhhhhccc
Confidence            44566777777777888999998888888765 8887765432            3333333334444578999999 99


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh-
Q 042372          229 RFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR-  307 (402)
Q Consensus       229 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-  307 (402)
                      ||++++++.++..++.+.+.+..                     .....+.+.....+.+.....+...+++.|.+|++ 
T Consensus        80 ~r~~~~~g~~~~~~g~~~~~~~~---------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~  138 (489)
T PRK10207         80 TKRTIVLGAIVLAIGYFMTGMSL---------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD  138 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc---------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc
Confidence            99999999998888887766531                     11112222223333434445556677889999877 


Q ss_pred             -hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          308 -LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       308 -~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                       .|+.+.++.+...++|.+++|.+.+++.+..  +|+..|++.++..+++.+...+.
T Consensus       139 ~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~--gw~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        139 PRLDGAFTLFYMSINIGSLISLSLAPVIADKF--GYSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHHHHHHc
Confidence             4578899999999999999999999999887  89999988655444444443333

>PRK03699 putative transporter; Provisional

Probab=99.47  E-value=3.1e-12  Score=118.75  Aligned_cols=174  Identities=11%  Similarity=0.026  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII  232 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  232 (402)
                      +.++..++.++............+|.+.++++++..+.+.            ......++..++.++.|++.||+|||+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~------------~~s~~~~~~~i~~~~~g~l~dr~g~r~~   74 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSN------------TFTFLNAGILISIFLNAWLMEIIPLKRQ   74 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3455555555555555666777788888889998886554            6666777888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC  312 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  312 (402)
                      +..+.++.+++.++....                     ++.+.+.+ .....+.+.....+....++.|.+|++.|+.+
T Consensus        75 ~~~~~~~~~i~~~l~~~~---------------------~~~~~~~~-~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~  132 (394)
T PRK03699         75 LIFGFALMILAVAGLMFS---------------------HSLALFSI-AMFVLGVVSGITMSIGTFLITHVYEGKQRGSR  132 (394)
T ss_pred             HHHHHHHHHHHHHHHHHc---------------------chHHHHHH-HHHHHHHhhHhhccchhHHhhhhcccchHHHH
Confidence            998887777776665542                     22222222 22222222222334555677899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (402)
                      .++.+....+++.++|.+.+.+..... +|+..|.+.+++.++..++.+
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~-gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        133 LLFTDSFFSMAGMIFPIIAAYLLARSI-EWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHH
Confidence            999888888888999988887654322 899999988877766555444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.47  E-value=1.7e-12  Score=120.55  Aligned_cols=176  Identities=14%  Similarity=0.077  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372          157 GTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG  236 (402)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~  236 (402)
                      ......+....+........|.+.+++|.+..+.+.            ......++..++.++.|+++||+|||+.++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~   74 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHI------------AFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG   74 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence            333334444445555556788888888888876544            66666777788888999999999999999988


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372          237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS  316 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  316 (402)
                      .++..++.+.....                     .+..... ......+.+.....+....+..|.+|++.|+++.++.
T Consensus        75 ~~~~~i~~~~~~~~---------------------~~~~~~~-~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  132 (392)
T PRK10473         75 AALFIIASLLCSLA---------------------ETSSLFL-AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLL  132 (392)
T ss_pred             HHHHHHHHHHHHHh---------------------CcHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            87777766655542                     1222222 2222223222333345667789999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNG  368 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~  368 (402)
                      +....++..++|.+.+.+.+..  +|+..+++.+++.++..++.+ ++||++.
T Consensus       133 ~~~~~i~~~~~~~i~~~l~~~~--g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        133 NGITCIIPVLAPVLGHLIMLKF--PWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCc--ChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9999999999999988877665  899999888877776666554 4577643

>PRK10504 putative transporter; Provisional

Probab=99.47  E-value=1.5e-12  Score=123.92  Aligned_cols=177  Identities=12%  Similarity=0.116  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .++.+....++.....+....+.|.+.+++|.++.+.+.            ......++..++.++.|+++||+|||+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~   78 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHM------------VIVSYVLTVAVMLPASGWLADRVGVRNIF   78 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            455566666666667777778899999999998876544            55556677777888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      +.+..+.+++.+.....                     .+. ....+...+.+.+.....+...+++.|.+|++.|+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (471)
T PRK10504         79 FTAIVLFTLGSLFCALS---------------------GTL-NELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAM  136 (471)
T ss_pred             HHHHHHHHHHHHHHHHh---------------------CCH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            98877777666554432                     112 22222333333333334456667788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccC
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PET  366 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et  366 (402)
                      ++......+|..++|.+.+.+.+..  +|+..|.+.....++..+..... |+.
T Consensus       137 ~~~~~~~~~g~~~g~~~~g~l~~~~--gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        137 TFVTLPGQVGPLLGPALGGLLVEYA--SWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999998877  89999988777766666655543 543

>PRK11462 putative transporter; Provisional

Probab=99.47  E-value=1.2e-11  Score=116.67  Aligned_cols=248  Identities=9%  Similarity=-0.048  Sum_probs=129.2

Q ss_pred             HHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372            7 VIMSEYAN-KRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL   85 (402)
Q Consensus         7 ~~i~e~~~-~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~   85 (402)
                      ++..|.++ +++|.+..++...+..+|.++++.+...+....++                .....+|+....+.++++++
T Consensus       132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~----------------~~~~~g~~~~~~i~~ii~~i  195 (460)
T PRK11462        132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG----------------DNKPLGFQGGIAVLSVVAFM  195 (460)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CchhhhHHHHHHHHHHHHHH
Confidence            56788887 78999999999999999988888877665533321                11335799888777776665


Q ss_pred             HHHHH-hhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHH
Q 042372           86 TYYWR-MKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFL  164 (402)
Q Consensus        86 ~~~~~-~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (402)
                      ..+.. ...+|.++.    +++                             +.+.++.++....++.++.+....+....
T Consensus       196 ~~~i~~~~~kE~~~~----~~~-----------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~  242 (460)
T PRK11462        196 MLAFCFFTTKERVEA----PPT-----------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNIL  242 (460)
T ss_pred             HHHHHHhcceeccCC----Ccc-----------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            54433 334554211    000                             00111112222222222222222222222


Q ss_pred             HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372          165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM  244 (402)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  244 (402)
                      ......+...|...+.  .+. +..            .........++.+++.+++++++||+|+|+.+..+..+.++..
T Consensus       243 ~~~~~~~~~~y~~~y~--~g~-~~~------------~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~  307 (460)
T PRK11462        243 AVCVRGGAMMYYVTWI--LGT-PEV------------FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVIS  307 (460)
T ss_pred             HHHHHHhHhhhhhhhh--cCC-hHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            2222222222322222  221 111            1114445566777788899999999999988765544333322


Q ss_pred             HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-----hhhh--hhhHHHHH
Q 042372          245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-----ARLR--STCHGISA  317 (402)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~  317 (402)
                      +++.+.    ..               ...........+. +.+.....+..+++.+|...     +..|  |...+...
T Consensus       308 ~~~~~~----~~---------------~~~~~~~~~~~l~-g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~  367 (460)
T PRK11462        308 LAMFFV----PM---------------QASITMFVFIFVI-GVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTL  367 (460)
T ss_pred             HHHHHh----ch---------------hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHH
Confidence            222221    10               1111122221222 22222333344555666554     2233  44456667


Q ss_pred             HHHHHHHHHHHHhHHHHhhhc
Q 042372          318 AAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       318 ~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      ....+|..+++.+.+.+.+..
T Consensus       368 f~~Klg~alg~~i~g~iL~~~  388 (460)
T PRK11462        368 FVLKLGLAFGGALIGWMLAYG  388 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            889999999999988887654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.47  E-value=8e-12  Score=118.31  Aligned_cols=307  Identities=9%  Similarity=0.022  Sum_probs=157.5

Q ss_pred             CchhHHhhhhccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh
Q 042372            3 PLSAVIMSEYANKRT---RGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG   79 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~---rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~   79 (402)
                      |...++++|++|+++   |+++.++++.+.++|.++++.+++.+.                       +..+||+.|.+.
T Consensus       121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~-----------------------~~~g~~~~f~~~  177 (475)
T TIGR00924       121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA-----------------------ENYGYHVGFNLA  177 (475)
T ss_pred             CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH-----------------------HhcChHHHHHHH
Confidence            567789999998764   888999999999999999999999887                       567899999987


Q ss_pred             hHHHHHHHHHHhhcC----CCchhHhhhcCCHHH--HHHHHH-----------H-hhccccccccC-----------CCC
Q 042372           80 AVPAALTYYWRMKMP----ETARYTALVEGNQKK--AAVDMA-----------K-VLDTDINVATS-----------AYP  130 (402)
Q Consensus        80 ~i~~~~~~~~~~~lp----esp~~l~~~~~~~~~--~~~~~~-----------~-~~~~~~~~~~~-----------~~~  130 (402)
                      ++..++.++...+.+    +.|+.  .++.++++  ......           . ....+......           ...
T Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (475)
T TIGR00924       178 AVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFF  255 (475)
T ss_pred             HHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            765554444433332    22211  00000110  000000           0 00000000000           000


Q ss_pred             CCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372          131 APVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVA  209 (402)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  209 (402)
                      ....++     ..... .+++.+.++.++.........+.......+.+.++ .+.+......        -...+..++
T Consensus       256 ~~~~~~-----~~~~~-~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~i--------p~~~~~~~n  321 (475)
T TIGR00924       256 RLAFKP-----RLDAV-ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSV--------PVIWFQSLN  321 (475)
T ss_pred             HHHHhc-----cCCHH-HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEE--------CHHHHHhhh
Confidence            000000     00000 11111122333333333333333333334444333 2221111000        011133334


Q ss_pred             Hhhhcccchhh----hhhccc-cchhHHH--HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH
Q 042372          210 LFATVPGYWFT----VFLIDR-IGRFIIQ--LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG  282 (402)
Q Consensus       210 ~i~~~~g~~~~----g~l~dr-~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (402)
                      .+..++..++.    .++.+| .+.+...  .+|.++.+++.+.+.+.........             ..+.++.+...
T Consensus       322 ~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~-------------~~s~~~~i~~~  388 (475)
T TIGR00924       322 PFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGG-------------LTSPWFMVLIY  388 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------------ccCHHHHHHHH
Confidence            44444433332    344444 2223333  5677777777666554321111100             11223333344


Q ss_pred             HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372          283 LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      ++...+.....|....+..+..|++.||+..|+......+|..+++.+.....+..  ++...|...++..++..++.++
T Consensus       389 ~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       389 LFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ--GVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHHHH
Confidence            44445566667788888999999999999999999999999999988887765544  6777777777776666665554


Q ss_pred             c
Q 042372          363 V  363 (402)
Q Consensus       363 l  363 (402)
                      +
T Consensus       467 ~  467 (475)
T TIGR00924       467 M  467 (475)
T ss_pred             H
Confidence            4

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.47  E-value=7.3e-13  Score=120.90  Aligned_cols=168  Identities=18%  Similarity=0.253  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHhHh-hhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQK-DIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  241 (402)
                      +.............| .+.+++|.+..+.+.            ......++..++.++.|+++||+|||+.++.+.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~   73 (352)
T PF07690_consen    6 FLSGFGFSIISPALPLYLAEELGLSPSQIGL------------LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA   73 (352)
T ss_dssp             HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHH------------HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence            333344445555566 666778888887655            6777778888889999999999999999999988888


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK  321 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  321 (402)
                      ++..+..+.                     .+.+ ..++..+..+.+.....+....++.|.+|++.|+.+.++.+....
T Consensus        74 ~~~~~~~~~---------------------~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  131 (352)
T PF07690_consen   74 LGSLLLAFA---------------------SNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFS  131 (352)
T ss_dssp             HHHHHHHHH---------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHH
T ss_pred             hHHHHhhhh---------------------hhHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhh
Confidence            874444432                     1222 333333344444445556777888999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccC
Q 042372          322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPET  366 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et  366 (402)
                      +|..++|.+.+.+.+..  +|+..|++.+++.++..++.. ++++.
T Consensus       132 ~g~~~g~~l~~~l~~~~--~~~~~~~~~~~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  132 LGSILGPLLGGFLISYF--GWRWAFLISAILSLIAAILFILFLPEP  175 (352)
T ss_dssp             HHHHHHHHHHHHCCCHC--HHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred             hhhhcccchhhhhhhcc--ccccccccccchhhhhhhhHhhhhhhc
Confidence            99999999999998766  899999999998888877533 33433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.46  E-value=1.2e-12  Score=120.14  Aligned_cols=164  Identities=17%  Similarity=-0.036  Sum_probs=117.3

Q ss_pred             HHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042372          169 FYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILG  248 (402)
Q Consensus       169 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  248 (402)
                      ........|.+..+.+.+..+.+.            ......++.+++.++.|+++||+|||+.++.+.++..++.++..
T Consensus        15 ~~~~~~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~   82 (365)
T TIGR00900        15 TAITQVALPLYVLAGTGSASVLSL------------AALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP   82 (365)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHH------------HHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            333444556677777777765444            77777888888899999999999999999988877776666555


Q ss_pred             HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372          249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA  328 (402)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~  328 (402)
                      .......                .+.+.+ .+.....+.+.....+...++..|.+|++.|++..++.+....+|.+++|
T Consensus        83 ~~~~~~~----------------~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  145 (365)
T TIGR00900        83 FVALLGG----------------LNIWQV-YVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGP  145 (365)
T ss_pred             HHHHcCC----------------CcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4421100                122222 22233333333344556677889999999999999999999999999999


Q ss_pred             HhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          329 FGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .+.+.+.+..  +|+..|++.++..+++.+..+.+
T Consensus       146 ~l~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       146 GIGGLMYATL--GIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999988877  89999988777766665555544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.46  E-value=1.7e-12  Score=124.35  Aligned_cols=179  Identities=17%  Similarity=0.157  Sum_probs=127.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH
Q 042372          152 GLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI  231 (402)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~  231 (402)
                      ++.+..+.+..+.............|.+.+++|.+..+.+.            ......++..++.++.|+++||+|||+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~   86 (496)
T PRK03893         19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAAS------------LISAAFISRWFGGLLLGAMGDRYGRRL   86 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            34555566666666666666777778888889988876544            566667778888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372          232 IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST  311 (402)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  311 (402)
                      .++.+.++.+++.++..+.                     .+. ....+...+.+++..+..+....++.|.+|++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~---------------------~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~  144 (496)
T PRK03893         87 AMVISIVLFSVGTLACGFA---------------------PGY-WTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNK  144 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHH---------------------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            9998888777777666653                     222 222333333333334445556677899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPET  366 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et  366 (402)
                      +.++......+|..+++.+.+.+.+..  +|+..|++..+..++..+....+||.
T Consensus       145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~p~~  197 (496)
T PRK03893        145 ASGFLISGFSIGAVVAAQVYSLVVPVW--GWRALFFIGILPIIFALWLRKNLPEA  197 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999999888876  89988876544433333333344654

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.45  E-value=3.4e-11  Score=114.85  Aligned_cols=307  Identities=9%  Similarity=0.086  Sum_probs=173.9

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCC--cchhHHHHHh
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGD--YLWRIVLMFG   79 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Wr~~f~~~   79 (402)
                      ++.+.+|+-|...+++-..++|+..+...+|.++|.++++++.+.+.+-. ..+..+++     ....  .-|+.-|++.
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~-~~~~~it~-----~DPrWIGAWWlGFLi~  328 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG-LSPIGITP-----TDPRWIGAWWLGFLIC  328 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc-cCCCCCCC-----CCcchhhHHHHHHHHH
Confidence            56788999999999999999999999999999999999999988665421 11111111     1112  2477777777


Q ss_pred             hHHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCC-CCCCCCCCcccccchhhHHhhhhhHHHHHH
Q 042372           80 AVPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSA-YPAPVSPEASTYGLFSKEFVQKHGLHLLGT  158 (402)
Q Consensus        80 ~i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (402)
                      +...++..+..+++|....-  . +++.++  ++      .+..++.++ ........+..++..+.-..--..+.++..
T Consensus       329 g~~~~~~a~p~f~fPk~lp~--~-~~~~~~--~~------~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~  397 (735)
T KOG3626|consen  329 GALLLFSAVPLFFFPKELPK--S-QKRKRA--RD------LHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLV  397 (735)
T ss_pred             HHHHHHHHHHHHhCcccCcc--c-cccchh--hh------hcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHH
Confidence            77777777777777765321  1 111000  00      000000000 000001111112222211111111366677


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc--hhHHHHH
Q 042372          159 TSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG--RFIIQLG  235 (402)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~~~~  235 (402)
                      .+...+....+.+...|+|.|+++ +|.+...+..           +...+...+..+|.+++|+++.|+.  .|....+
T Consensus       398 ~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~-----------l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~  466 (735)
T KOG3626|consen  398 VLASVIESLAITGYITFLPKYLETQFGISASLANI-----------LTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKF  466 (735)
T ss_pred             HHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHH-----------HhhhhhhhhhhhhhhccceeeeeecccHHHHHHH
Confidence            777777778888999999999986 8888876543           1334444556677789999999874  3433333


Q ss_pred             HHHHHHHHHHH---HHHhhccc----------------cCCC-----CCCC-----------------------------
Q 042372          236 GFLLMSICMAI---LGARYDSL----------------RGKK-----CDAK-----------------------------  262 (402)
Q Consensus       236 ~~~~~~~~~~~---~~~~~~~~----------------~~~~-----~~~~-----------------------------  262 (402)
                      ..+...+..+.   ..+.....                ..+.     |..+                             
T Consensus       467 ~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~  546 (735)
T KOG3626|consen  467 VIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTE  546 (735)
T ss_pred             HHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcc
Confidence            33322222222   11111000                0000     1111                             


Q ss_pred             -----------------C-----C--CCCccCCCh----hHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          263 -----------------K-----D--PLHEYCDGN----HAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       263 -----------------~-----~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                                       +     +  ..+++++..    ...+++++.+..+....+.. ..+.++...+|++.|+.+.|
T Consensus       547 ~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~-p~~~i~LR~V~~e~ks~AlG  625 (735)
T KOG3626|consen  547 SSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAV-PGMLIVLRCVPPEEKSFALG  625 (735)
T ss_pred             cccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccC-cceEEEEEccCchhchhhhH
Confidence                             0     0  112233333    23344444444444444443 45567778889999999999


Q ss_pred             HHHHHHHH-HHHHHHHhHHHHhhh
Q 042372          315 ISAAAGKA-GAIVGAFGVQYYTQK  337 (402)
Q Consensus       315 ~~~~~~~~-g~~i~~~~~~~~~~~  337 (402)
                      +..++.++ |.+-+|.++|++.|.
T Consensus       626 ~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  626 FQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHHHHHHhcCCchHhhhhhHhh
Confidence            99988776 566788999999875

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.45  E-value=2.7e-12  Score=120.84  Aligned_cols=182  Identities=13%  Similarity=0.029  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .++...+.+..............|.+. +.|.++.+.+.            ......++..++.++.|+++||+|||+.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~g~~~~~   94 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGF------------ALSAISIAYGFSKFIMGSVSDRSNPRVFL   94 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHH------------HHHHHHHHHHHhhhccchhhhccCCceeh
Confidence            334443433333333333444556554 45888776554            67777788888999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      ..+.++.+++.++.......   .              .+ .....+.....+.+.....+.....+.|.+|++.|+++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~---~--------------~~-~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~  156 (438)
T TIGR00712        95 PAGLILSAAVMLLMGFVPWA---T--------------SS-IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIV  156 (438)
T ss_pred             HHHHHHHHHHHHHHhccccc---c--------------ch-HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHH
Confidence            88877777766554432110   0              11 122222222222222233344556678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      ++.+....+++.+++.+.+....... +|+..|++.+++.++..+..+ ++||++
T Consensus       157 ~~~~~~~~~g~~~~~~l~~~~~~~~~-~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       157 SIWNCAHNIGGGIPPLLVLLGMAWFN-DWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            99999999999988877665443221 899999998888777655544 456653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.45  E-value=2.9e-12  Score=119.54  Aligned_cols=164  Identities=15%  Similarity=0.085  Sum_probs=116.1

Q ss_pred             HHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042372          169 FYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILG  248 (402)
Q Consensus       169 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  248 (402)
                      ........|.+.++++.++.+.+.            ......++..++.++.|.++||+|||+.++.+..+..++.+...
T Consensus        29 ~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   96 (406)
T PRK15402         29 NDMIQPGMLAVVEDFNAGAEWVPT------------SMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAIL   96 (406)
T ss_pred             hhhHhcchHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            333444456677788888775444            56667778888888999999999999999988877777766655


Q ss_pred             HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372          249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA  328 (402)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~  328 (402)
                      ..                     .+.+.+. ......+.+.....+....+..|.+|++.|..+.++......++..++|
T Consensus        97 ~~---------------------~~~~~l~-~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~  154 (406)
T PRK15402         97 LA---------------------QSIEQFT-LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGP  154 (406)
T ss_pred             HH---------------------ccHHHHH-HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Confidence            43                     2222222 2222222222222345566778999999999999998888888899999


Q ss_pred             HhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372          329 FGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNG  368 (402)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~  368 (402)
                      .+.+.+.+..  +|+..+++.+++.+++.+..++ .||+++
T Consensus       155 ~i~~~l~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        155 LVGAALIHVL--PWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHcc--CccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            9998888766  8999999888887776665543 477643

>TIGR00788 fbt folate/biopterin transporter

Probab=99.44  E-value=1e-12  Score=124.13  Aligned_cols=297  Identities=11%  Similarity=0.013  Sum_probs=155.1

Q ss_pred             chhHHhhhhccccchhHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            4 LSAVIMSEYANKRTRGAFIAAV---FAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~---~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      ++-++..|..+ +++....+..   .....+|.++++.+++.+.                       +..+||..|++.+
T Consensus       140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~-----------------------~~~~~~~~f~~~a  195 (468)
T TIGR00788       140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL-----------------------DKTLTRILFLITA  195 (468)
T ss_pred             hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH-----------------------HhcCcchHHHHHH
Confidence            44567888888 5554433333   3334589999999999887                       5678999999987


Q ss_pred             HHHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           81 VPAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        81 i~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      +..++..+..++++|.+..  ...+..++.......... ...         +..+....+ ++....++   .++....
T Consensus       196 ~l~ll~~~~~~~~~E~~~~--~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~-l~~~l~~~---~i~~~l~  259 (468)
T TIGR00788       196 ALLLLQLFVSNLSKERRAF--VRPRIGTYLEMNMALLTL-GVL---------ANVKVQILG-LRGAIQLL---EIAKPLI  259 (468)
T ss_pred             HHHHHHHHHHHhccccccc--ccccccccchhhhhhhhh-hHH---------HHHHHHHHH-HHHHHhcH---HHHHHHH
Confidence            7776666666778886311  001100000000000000 000         000000000 01111111   1111111


Q ss_pred             HHHH-HHHHHHHH-HHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372          161 TWFL-LDIAFYTI-NLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       161 ~~~~-~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  238 (402)
                      ..+. ........ ..+. ......|+++...+.            ......++.+++..+.+++.+|++.|+++.++.+
T Consensus       260 fifl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G~------------~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~  326 (468)
T TIGR00788       260 FIFLSYANLPGASGSVFC-ATTQCLPGGPSFSGM------------SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTL  326 (468)
T ss_pred             HHHHHHhhcCCCCceeEE-EEcccCCCCcchhhh------------HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence            1111 00000000 0000 111347888886655            6666778888899999999999999999998877


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      +.+++..........+...         ...  ...+.......+.......... ....++++..|++.+++..++.+.
T Consensus       327 l~~~~~~~~~~l~~~~~~~---------~gi--~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s  394 (468)
T TIGR00788       327 LYTLSSLFDLILVKRWNLA---------FGI--SDEVFVLGDSIIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLAS  394 (468)
T ss_pred             HHHHHHhCceeeeeccccc---------cCC--CCeeeeeehhHHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHH
Confidence            6666554432211111100         000  0011111111111112222222 346778999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhcCC---CchhhhHHHHHH---HHHHHHHHhhccc
Q 042372          319 AGKAGAIVGAFGVQYYTQKGDK---QIKQSIIALAVV---NFLGFLCSFMVPE  365 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~l~e  365 (402)
                      +.++|..+++.+.+.+.+..+.   .++..+....+.   .++...+.+++|+
T Consensus       395 ~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       395 ILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999887631   244444433333   3333344445586

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.43  E-value=2.6e-12  Score=118.77  Aligned_cols=178  Identities=17%  Similarity=0.087  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .++......+......+......|.+.+++|.+..+.+.            ......++..++.++.|++.||+|||+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~   71 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGH------------MISYYALGVVVGAPIIALFSSRYSLKHIL   71 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhH------------HHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence            344555555555556666667788888889998876554            67777888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      ..+.++.+++.++....                     ++.+.+.+ ...+.+.+.....+....+..|.+|++.|+.+.
T Consensus        72 ~~~~~~~~~~~~l~~~~---------------------~~~~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (382)
T PRK10091         72 LFLVALCVIGNAMFTLS---------------------SSYLMLAI-GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAV  129 (382)
T ss_pred             HHHHHHHHHHHHHHHHh---------------------CcHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHH
Confidence            99988888777766553                     22223332 223333222222334445678899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      ++......++..+++.+.+.+.+..  +|+..|.+.+++.++..+..+ ++||.+
T Consensus       130 ~~~~~~~~~g~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        130 AGMVSGMTVANLLGIPLGTYLSQEF--SWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999988888766  899999998887766655444 457753

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.42  E-value=1.3e-12  Score=124.51  Aligned_cols=143  Identities=20%  Similarity=0.092  Sum_probs=103.8

Q ss_pred             HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372          204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL  283 (402)
Q Consensus       204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (402)
                      .......++..++.++.|+++||+|||+.++.+.++..++.++......                   .......++...
T Consensus        75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~r~  135 (481)
T TIGR00879        75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF-------------------ALSVEMLIVGRV  135 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------------------ccchHHHHHHHH
Confidence            3777788888899999999999999999999988877777666644321                   111122333333


Q ss_pred             HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH---HHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372          284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV---QYYTQKGDKQIKQSIIALAVVNFLGFLCS  360 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (402)
                      +.+.+.....+....++.|.+|++.|+.+.++.+....+|.++++.+.   ....+..  +|+..|++.++..++..+..
T Consensus       136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       136 LLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL--GWRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCc--cHHHHHHHHHHHHHHHHHHH
Confidence            333333444456677889999999999999999999999999999887   4443444  89999998766666666656


Q ss_pred             hhcccCC
Q 042372          361 FMVPETN  367 (402)
Q Consensus       361 ~~l~et~  367 (402)
                      +++||+.
T Consensus       214 ~~l~~~~  220 (481)
T TIGR00879       214 FFLPESP  220 (481)
T ss_pred             hcCCCCh
Confidence            6667764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.41  E-value=7.1e-12  Score=117.74  Aligned_cols=188  Identities=13%  Similarity=0.047  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcC---CchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATG---IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI  231 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~  231 (402)
                      ++...+.++.............|.+.++++   .+..+.+         ..........++..+|.++.|+++||+|||+
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~   94 (432)
T PRK10406         24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLL---------QTAGVFAAGFLMRPIGGWLFGRIADKHGRKK   94 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            333334444444455555555666666653   2322211         2222445566777789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372          232 IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST  311 (402)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  311 (402)
                      .+..+.++.+++.++.++...+....              .......++..+..+.+..+..+...+++.|.+|++.|+.
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~  160 (432)
T PRK10406         95 SMLISVCMMCFGSLVIACLPGYETIG--------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF  160 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCchhHH--------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence            99999988888887766642110000              0011223344445555555566777889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhh--------hcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQ--------KGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      ..++.+.....|.++++.+...+..        ..  +|+.+|++.++..++...+...+||++
T Consensus       161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--gWr~~F~i~~~~~ll~~~~~~~~~e~~  222 (432)
T PRK10406        161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREW--GWRIPFALGAVLAVVALWLRRQLDETS  222 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc--chHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            9888877777777777765544432        23  899999987776666544433446653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.41  E-value=5.8e-12  Score=116.97  Aligned_cols=179  Identities=12%  Similarity=-0.005  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      ..+.......+............|.+.++++.++.+.+.            ......++..++.++.|+++||+|||+.+
T Consensus         9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~Dr~grr~~~   76 (394)
T PRK11652          9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQA------------VMAAYLLTYGLSQLFYGPLSDRVGRRPVI   76 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence            334344444343334444444567788889998886554            66677788888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      +.+..+..++.+.....                     .+.+.+ .+.....+.+.....+....+..|.++.+.|+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~---------------------~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (394)
T PRK11652         77 LVGMSIFILGTLVALFA---------------------HSLTVL-IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHAN  134 (394)
T ss_pred             HHHHHHHHHHHHHHHHH---------------------ccHHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHH
Confidence            98877777666655442                     122222 22222222222222234445667888888999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH-hhcccCCC
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS-FMVPETNG  368 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~et~~  368 (402)
                      ++.+....++..++|.+.+.+.+..  +|+..|++.++..++..+.. +++||++.
T Consensus       135 ~~~~~~~~~~~~~g~~i~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        135 SLLNMGILVSPLLAPLIGGLLTTLF--GWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            9998888899999999999888766  89999998877666554443 34577543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.40  E-value=7.9e-12  Score=116.54  Aligned_cols=157  Identities=16%  Similarity=0.125  Sum_probs=112.9

Q ss_pred             HhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcccc
Q 042372          176 QKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLR  255 (402)
Q Consensus       176 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  255 (402)
                      +|.+.++++.+....+.            ......++..++.++.|+++||+|||++++.+.++.+++.++....     
T Consensus        39 l~~i~~~~~~~~~~~~~------------~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----  101 (413)
T PRK15403         39 IINVVRDFNADVSLAPA------------SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----  101 (413)
T ss_pred             HHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----
Confidence            34555667777665443            5566667777888899999999999999999888777776665553     


Q ss_pred             CCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372          256 GKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT  335 (402)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  335 (402)
                                      .+...+ ++..+..+.+.....+..+++..|.+|++.|++..++......++..++|.+.+.+.
T Consensus       102 ----------------~~~~~l-~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~  164 (413)
T PRK15403        102 ----------------TSMTQF-LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM  164 (413)
T ss_pred             ----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            222222 222222222222223344567789999999999999999999999999999998888


Q ss_pred             hhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372          336 QKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNG  368 (402)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~  368 (402)
                      +..  +|+..|++.+++.+++.+..+ .+||+++
T Consensus       165 ~~~--gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        165 HFV--HWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             Hhc--CHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            776  899999998888777766544 4588754

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.40  E-value=4.8e-12  Score=115.72  Aligned_cols=164  Identities=12%  Similarity=0.032  Sum_probs=112.1

Q ss_pred             HHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 042372          168 AFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAIL  247 (402)
Q Consensus       168 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  247 (402)
                      .........|.+.+++|.+..+.+.            ......++..++.+..|+++||+|||+++.........+. +.
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~~g~------------~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~   72 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEELGL------------LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GR   72 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HH
Confidence            3445556678888889999887555            6666677777888889999999999987665433332222 11


Q ss_pred             HHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHH
Q 042372          248 GARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVG  327 (402)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~  327 (402)
                      ...                     .......++..+..+.+.. .........+|.+|++.|+++.++.+....+|..++
T Consensus        73 ~~~---------------------~~~~~~l~~~R~l~G~g~~-~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~  130 (368)
T TIGR00903        73 LLD---------------------PFNYEWLLACQLLAALGQP-FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFA  130 (368)
T ss_pred             HHH---------------------hccHHHHHHHHHHHHhHhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            111                     0111223333333332222 223344455899999999999999999999999999


Q ss_pred             HHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372          328 AFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNG  368 (402)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~  368 (402)
                      +.+.+++.+..  +|+..|++.+++.++..++.+ ++||+++
T Consensus       131 ~~~~~~l~~~~--gWr~~f~~~~~l~~~~~~~~~~~lp~~p~  170 (368)
T TIGR00903       131 LAAGLKIYTAG--GLQLLIIPIAAVAAAGIILVLAALPALPF  170 (368)
T ss_pred             HHHHHHHHHcc--chHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999988876  999999998888777665555 4587643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.40  E-value=9.4e-12  Score=115.81  Aligned_cols=175  Identities=10%  Similarity=-0.043  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      +.......+....+.......+|.++ +++|.+..+.+.            ......++..++.++.|+++||+|||+++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (399)
T PRK05122         17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGL------------VISLQYLATLLSRPHAGRYADTLGPKKAV   84 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH------------HHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence            44444455555555555556677655 458888876555            77777888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      +.+.++.+++.+............              ......+++..+..+.+.....+....+..|.+|++.|+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~  150 (399)
T PRK05122         85 VFGLCGCALSGLLYLLAGLLAAWP--------------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVI  150 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccc--------------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccch
Confidence            998877666555443322100000              011122333333333333344445556678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHH
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGF  357 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (402)
                      ++......+|..+++.+.+.+.+..  +|+..+++..++.++..
T Consensus       151 ~~~~~~~~~g~~~g~~l~~~l~~~~--g~~~~~~~~~~~~~~~~  192 (399)
T PRK05122        151 SWNGIATYGALAIGAPLGVLLYHWG--GLAGLGLLIMLLALLGL  192 (399)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHH
Confidence            9998888889999999999888876  88887776555544433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.40  E-value=3.5e-12  Score=121.64  Aligned_cols=151  Identities=17%  Similarity=0.064  Sum_probs=106.9

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ......++.+++.++.|+++||+|||++++.+.++..++.+..+............          +......+++..++
T Consensus        60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~R~l  129 (479)
T PRK10077         60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPD----------NTGYVPEFVIYRII  129 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccccccc----------chhHHHHHHHHHHH
Confidence            77778888999999999999999999999999888777766555421110000000          01222333444455


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh--------hcCCCchhhhHHHHHHHHHH
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ--------KGDKQIKQSIIALAVVNFLG  356 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  356 (402)
                      .+.+..+..+...++++|.+|++.|+.+.++.+....+|..+++.+...+..        ..  +|+..|++.++..++.
T Consensus       130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--gWr~~f~~~~~~~~~~  207 (479)
T PRK10077        130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD--GWRYMFASEAIPALLF  207 (479)
T ss_pred             HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC--ChHHHHHHHHHHHHHH
Confidence            5555556666778889999999999999999999888888888766554431        22  8999999888777776


Q ss_pred             HHHHhhcccCC
Q 042372          357 FLCSFMVPETN  367 (402)
Q Consensus       357 ~~~~~~l~et~  367 (402)
                      .+..+++||+.
T Consensus       208 ~~~~~~l~~s~  218 (479)
T PRK10077        208 LMLLYFVPETP  218 (479)
T ss_pred             HHHHHcCCCCc
Confidence            66666678875

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.39  E-value=8.3e-12  Score=118.55  Aligned_cols=137  Identities=12%  Similarity=0.044  Sum_probs=106.0

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ......++.+++.++.|+++||+|||+.+..+.++.+++.++......                    ......++..++
T Consensus        81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~~  140 (465)
T TIGR00894        81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--------------------GGIALVVFCRVI  140 (465)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--------------------cCchHHHHHHHH
Confidence            777778888889999999999999999999888777766655433211                    111234444455


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh-cCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK-GDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .+.+.....+....++.|.+|++.|+++.++......+|.++++.+.+.+.+. .  +|+.+|++.+++.++..++.+++
T Consensus       141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~--gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWG--GWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCeehhhhhHHHHHHHHHHHHH
Confidence            55555666677778899999999999999999999999999999999988876 4  89999999888877766655544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.38  E-value=6.2e-12  Score=116.07  Aligned_cols=160  Identities=15%  Similarity=0.115  Sum_probs=118.7

Q ss_pred             HHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 042372          172 INLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARY  251 (402)
Q Consensus       172 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  251 (402)
                      ....+|.+.+++|.++.+.+.            ......++..++.++.|+++||+|||+.+..+.++.+++....... 
T Consensus        10 ~~p~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-   76 (377)
T PRK11102         10 YLPALPVIAADFGVSAGSVQM------------TLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-   76 (377)
T ss_pred             HhccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-
Confidence            334567778888888876554            6677778888889999999999999999999888877777766553 


Q ss_pred             ccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH
Q 042372          252 DSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV  331 (402)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~  331 (402)
                                          .+.+.. .+.....+.+.....+....+..|.+|++.|+++.++.+....+|..++|.+.
T Consensus        77 --------------------~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  135 (377)
T PRK11102         77 --------------------QTIDQL-IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG  135 (377)
T ss_pred             --------------------ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                122222 22222333333333445567789999999999999999999999999999999


Q ss_pred             HHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          332 QYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      +.+.+..  +|+..|++.+++.++..++.. ++||++
T Consensus       136 ~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        136 GWLLVWF--SWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHc--ChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            9988877  899999888877777665554 457654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.38  E-value=2.2e-11  Score=113.61  Aligned_cols=176  Identities=23%  Similarity=0.218  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372          159 TSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  238 (402)
                      ....++..........++|.+.+++|.+..+...       ...+....+..+...++.++.|+++||+|||+.++.+.+
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALN-------MWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            3344444555556667788888888877553210       022336667777888888899999999999999998887


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      +..++.+++...                     .+.+.+.+... ..+.+ .+..+....+..+.+|++.|+.+.++...
T Consensus        93 ~~~~~~~~~~~~---------------------~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (408)
T PRK09874         93 GMGIVMVLMGLA---------------------QNIWQFLILRA-LLGLL-GGFVPNANALIATQVPRNKSGWALGTLST  149 (408)
T ss_pred             HHHHHHHHHHHH---------------------hhHHHHHHHHH-HHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence            777766655442                     22222222222 22222 22344555667889999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccC
Q 042372          319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPET  366 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et  366 (402)
                      ...+|.+++|.+.+.+.+..  +|+..|++.+++.++..+..++ +||.
T Consensus       150 ~~~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        150 GGVSGALLGPLAGGLLADSY--GLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999988776  8999999888877776665554 4554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.38  E-value=1.4e-11  Score=114.44  Aligned_cols=168  Identities=14%  Similarity=0.109  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .+....+.+....+++.++ ++.|++....++            ......+...+..++.|+++||+|||+.+..+..+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl------------~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~   86 (400)
T PRK11646         19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGI------------ALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH------------HHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence            3333444455555666555 558888886555            556666666777788999999999999999998888


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .++.+.....                     ++.+.. .+.....+.+.....+...+++.|.+|++.|+++.|+.+...
T Consensus        87 ~~~~~~~~~~---------------------~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  144 (400)
T PRK11646         87 AAGFATMAIA---------------------HEPWLL-WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQD  144 (400)
T ss_pred             HHHHHHHHHh---------------------ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            8877766543                     222222 222333333233334455667789999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccC
Q 042372          321 KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPET  366 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et  366 (402)
                      .+|..++|.+.+.+.+ .  +|+..|++.+++.++..++.. ++||.
T Consensus       145 ~~g~~ig~~l~g~l~~-~--g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        145 SAGAVIGALLGSWLLQ-Y--DFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHH-h--hHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999884 4  899999988777666554433 44653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.38  E-value=5.5e-12  Score=119.68  Aligned_cols=179  Identities=14%  Similarity=0.048  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      +...++.++.....-.......|.+.+++|.+..+.+.            ..+...++..++.++.|+++||+|||+++.
T Consensus        31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~   98 (467)
T PRK09556         31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGM------------IGLGFSITYGVGKTLVGYYADGKNTKQFLP   98 (467)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHhhhhhHhhccCccchHH
Confidence            33333333333333334445578888889998887555            666677777788889999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      .+.++.++..+.++.......                .+. ...++.....+.+.....+....++.|.+|++.|+.+.|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~g  161 (467)
T PRK09556         99 FLLILSAICMLGFGASLGSGS----------------VSL-GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLG  161 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhccc----------------chH-HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEE
Confidence            887777776666554321111                122 233333333334334445666778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhc-CCCchhhhHHHHHHHHHHHHHHhh
Q 042372          315 ISAAAGKAGAIVGAFGVQYYTQKG-DKQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       315 ~~~~~~~~g~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      +......+|.++++.+..+..... ..+|+..|.+.+++.++..++.++
T Consensus       162 i~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        162 FWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             eeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999988876665532 115777787777766655444443

>PRK12382 putative transporter; Provisional

Probab=99.38  E-value=1e-11  Score=115.23  Aligned_cols=167  Identities=12%  Similarity=-0.049  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372          158 TTSTWFLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG  236 (402)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~  236 (402)
                      +.+..+............+|.++ +++|.+..+.+.            ......++..++.++.|+++||+|||+.++.+
T Consensus        20 ~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~------------~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~   87 (392)
T PRK12382         20 IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGI------------AVGIQFLATVLTRGYAGRLADQYGAKRSALQG   87 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHH------------HHHHHHHHHHHHhhhhhHHHHhhcchHHHHHH
Confidence            33333343334444445566554 568988886655            77778888888899999999999999999988


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372          237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS  316 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  316 (402)
                      .+...++.+............              ......+.+.....+.+.....+...++..|.+|++.|+++.++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~  153 (392)
T PRK12382         88 MLACGLAGLAYLLAAILPVSA--------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWN  153 (392)
T ss_pred             HHHHHHHHHHHHhhhccccch--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHH
Confidence            766555543322221100000              112222333333333322223344455678999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHH
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVV  352 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (402)
                      .....++..++|.+.+.+.+..  +|+..+.+..+.
T Consensus       154 ~~~~~~g~~~g~~~~~~l~~~~--g~~~~~~~~~~~  187 (392)
T PRK12382        154 GMAMYGALAAGAPLGLLLHSHF--GFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHH
Confidence            9988999999999998887766  787665554443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.38  E-value=6.8e-11  Score=112.70  Aligned_cols=133  Identities=11%  Similarity=-0.014  Sum_probs=79.7

Q ss_pred             chhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccc
Q 042372          217 YWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTT  296 (402)
Q Consensus       217 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (402)
                      ....+++.+|.+..+.+.+++++.+++.+.+..........+            .-+.+ +.+....+.+.+.....|..
T Consensus       337 ~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~------------~vs~~-~~~~~~~l~~~ge~~~~p~g  403 (500)
T PRK09584        337 AAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAG------------IVSVN-WLIASYGLQSIGELMISGLG  403 (500)
T ss_pred             HHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------ccCHH-HHHHHHHHHHHHHHHHhHHH
Confidence            334567777777777788888888888777665433211110            01222 33333444444556666778


Q ss_pred             eeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh------hc--CCCchhhhHHHHHHHHHHHHHHhh
Q 042372          297 FIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ------KG--DKQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       297 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      ..++.+..|++.||..+|+......+|..++..+......      ..  ..++...|...++..++..++.+.
T Consensus       404 ~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        404 LAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999998877666666666555432210      00  002556777777666544444443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.37  E-value=3.8e-13  Score=120.01  Aligned_cols=185  Identities=18%  Similarity=0.112  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      ....+++....+..--|.+....+..-+.++.++...++            +.....+...++++++|++.||+.||+++
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gl------------l~~vf~v~~~i~sPl~gyLadryNR~~v~  101 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGL------------LQTVFIVVFMIASPLFGYLADRYNRKRVI  101 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccc------------hhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence            444555555555555566655555555567888886665            77888888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      .+|..+-.++.+..++.                      ...+.++++..+.+.+-..+.++...+++|.+|...|+++.
T Consensus       102 ~vG~~iW~~Av~~~~fs----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~  159 (493)
T KOG1330|consen  102 AVGIFIWTLAVFASGFS----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVL  159 (493)
T ss_pred             eeHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHH
Confidence            99988888887777764                      23345556666666667788888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCCCCccc
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNGLSLEE  373 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~~~~~~  373 (402)
                      ++.+....+|..+|-.....+..... .|++.|.+.+++.++..++.++ .+|..++..++
T Consensus       160 ~ify~~ipvGsglG~vvgs~va~~~~-~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  160 GIFYFAIPVGSGLGYVVGSVVASLTF-WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             HHhhhhcccccceeEEeeeeeccCcc-ceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence            99999999999998888888877774 5999999999999988777764 46665443333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.37  E-value=2e-11  Score=112.18  Aligned_cols=177  Identities=19%  Similarity=0.176  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhh-hhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          156 LGTTSTWFLLDIAFYTINLTQKD-IYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      +..++..+......+....+.|. +.+++|+++.+.+.            ......++..++.++.|+++||+|||+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~   71 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGN------------LVAVPVLAGAVLRIILGFLVDKFGPRYTTT   71 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhH------------hhHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            34445555555666777777885 66679999886555            777778888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      ++.++..++.++.....                    .+. ....+..+..+.+. +..+....++.|.+|++.|+.+.+
T Consensus        72 ~~~~~~~i~~~~~~~~~--------------------~~~-~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~  129 (366)
T TIGR00886        72 LSLLLLAIPCLWAGLAV--------------------QSY-SVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALG  129 (366)
T ss_pred             HHHHHHHHHHHHHHHHh--------------------hhH-HHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHH
Confidence            99888888777665531                    022 22222223333322 223345667899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhc--------CCCchhhh-HHHHHHHHHHHHHHh-hcccC
Q 042372          315 ISAAAGKAGAIVGAFGVQYYTQKG--------DKQIKQSI-IALAVVNFLGFLCSF-MVPET  366 (402)
Q Consensus       315 ~~~~~~~~g~~i~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~-~l~et  366 (402)
                      +......+|..+++.+.+.+....        ..+|+..+ +..+++.++..++.+ +.+|+
T Consensus       130 ~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       130 LAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence            999888888888887776655421        11688888 443444444333333 34543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.36  E-value=3e-11  Score=115.11  Aligned_cols=172  Identities=9%  Similarity=-0.010  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc-cchh
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR-IGRF  230 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr-~grr  230 (402)
                      +.++..+...++....+|....+++.+++ ++|++..+...            .............+++|+++|| +|||
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~------------~~~~~~~~~~~~~~~~G~LaDr~~G~r   88 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSIT------------LFSSFSALVYGLVAIGGWLGDKVLGTK   88 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            34566666777777888888888888885 48888775432            2222222222233478999999 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh--
Q 042372          231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL--  308 (402)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--  308 (402)
                      +.++++.++.+++..++.+..                    ... ....+.....+.+.....+...++..|.+|++.  
T Consensus        89 ~~~~~g~~~~~ig~~l~~~~~--------------------~~~-~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~  147 (500)
T PRK09584         89 RVIMLGAIVLAIGYALVAWSG--------------------HDA-GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR  147 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--------------------ccH-HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh
Confidence            999999888887766655421                    111 122222222223233334455567899998643  


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHH
Q 042372          309 RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLC  359 (402)
Q Consensus       309 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (402)
                      |..+.++.+...++|.+++|.+.+++.+..  +|+..|.+.++..+++.+.
T Consensus       148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~--g~~~~F~i~~i~~~i~~i~  196 (500)
T PRK09584        148 LDGAFTMYYMSINIGSFFSMLATPWLAAKY--GWSVAFALSVVGMLITVVN  196 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHH
Confidence            456788889999999999999999999877  8999999877655555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.36  E-value=3.6e-11  Score=106.68  Aligned_cols=293  Identities=15%  Similarity=0.125  Sum_probs=177.9

Q ss_pred             HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH-
Q 042372            7 VIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL-   85 (402)
Q Consensus         7 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~-   85 (402)
                      +++.+..++++-++..++-.....+|.++.-++.....-....+.   ....  -..-+..+...=|..+.+.++--++ 
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~---~~~~--l~~l~~~~~~~~ri~~~l~A~W~li~  212 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTG---ITII--LLGLPPADGEDVRITGLLAALWWLLF  212 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccc---eeEE--eeccCccccccchhHHHHHHHHHHHH
Confidence            577888889888888887776777777766665433321110000   0000  0000011334567777776665444 


Q ss_pred             HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHH
Q 042372           86 TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLL  165 (402)
Q Consensus        86 ~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (402)
                      .+-++..+|+.++-   .........+..+                      ..++.+++...++   .+.......+..
T Consensus       213 ~iPm~~~v~~~~~~---~~~~~~~l~~g~k----------------------~L~~t~k~i~~~~---~i~~FLiA~~~~  264 (438)
T COG2270         213 ALPMILNVHDAEKI---SSPPPTALRNGFK----------------------ELKSTFKEIRGRK---NLVLFLIARFFY  264 (438)
T ss_pred             HhHHHhcccccccc---cccchHHHHHHHH----------------------HHHHHHHHHhccc---chHHHHHHHHHH
Confidence            44455556665431   0000000000000                      0111112222222   222222233333


Q ss_pred             HHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372          166 DIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM  244 (402)
Q Consensus       166 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  244 (402)
                      .=+..+...+...+.. ++|++..+..+            ......+..++|+++.|++.||+|.|+++.++.++..+..
T Consensus       265 ~DGv~til~~~~~fg~~~~gls~~~lll------------~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~  332 (438)
T COG2270         265 IDGVNTILAMGGVFGAADLGLSSTELLL------------IGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA  332 (438)
T ss_pred             HhhHHHHHHHHHHHHHHHcCccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence            3344555555566665 68998887554            6667778888999999999999999999888877666555


Q ss_pred             HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372          245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA  324 (402)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  324 (402)
                      +...+...                      ..-..++.++.+.+..+..+..-+|..++.|++.-+...|+++..++...
T Consensus       333 ~~~~~~~~----------------------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S  390 (438)
T COG2270         333 LYLIFLEG----------------------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAAS  390 (438)
T ss_pred             HHHHHccc----------------------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHH
Confidence            54443211                      12233334444444566677888899999999999999999999999999


Q ss_pred             HHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          325 IVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       325 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      ++||+..+...+.++ +-+..+....++.+++.++.+.+|+.+
T Consensus       391 ~~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~L~~v~~~~  432 (438)
T COG2270         391 FLGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLLLLRVKVPG  432 (438)
T ss_pred             HHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhhEEeecCCC
Confidence            999999999999887 567777777777888888777776543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.36  E-value=2.8e-11  Score=115.57  Aligned_cols=190  Identities=17%  Similarity=0.075  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .++...+.++....-+....+..|.+-+++..+.....      .............++..+|.++.|+++||+|||+++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   90 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSV------QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL   90 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            34444445555444444444555655555432221100      000111124566778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhH--HHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHA--WFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST  311 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  311 (402)
                      .++.++.+++.++.++...+..                -..+  ..+++..++.+.+..+..+....+++|.+|++.|+.
T Consensus        91 ~~~~~l~~i~~~~~a~~~~~~~----------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~  154 (490)
T PRK10642         91 AITIVIMSISTFCIGLIPSYAT----------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF  154 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH
Confidence            9999998888887776422100                0000  123344445555555666677788999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhh--------hcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQ--------KGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      ..++......+|..+++.+...+..        ..  +|+.+|++.+++.+++.++...+||+.
T Consensus       155 ~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~--gWR~~f~i~~~~~l~~~~~~~~~~esp  216 (490)
T PRK10642        155 MGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDW--GWRIPFFIALPLGIIGLYLRHALEETP  216 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCc--cHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            9999888777787777765544332        23  899999987665555554444567763

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.35  E-value=1.8e-11  Score=113.34  Aligned_cols=154  Identities=9%  Similarity=0.048  Sum_probs=109.0

Q ss_pred             HhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcc
Q 042372          174 LTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDS  253 (402)
Q Consensus       174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  253 (402)
                      ...+.+..+.+.++...+.            ......+...+..++.|+++||+|||++++++.++..++.+.+...   
T Consensus        24 ~~~~~~~~~~~~s~~~~~~------------~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~---   88 (393)
T PRK11195         24 FAAIALLKELHYPDWSQPL------------LQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG---   88 (393)
T ss_pred             HHHHHHHHHcCCcHHHHHH------------HHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH---
Confidence            3334455677776654433            5666677778888899999999999999999988777666554332   


Q ss_pred             ccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHH
Q 042372          254 LRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY  333 (402)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~  333 (402)
                                        .+.    .+..+..+.+.....|...+++.|++|++.|+++.|+......++.++||.+.+.
T Consensus        89 ------------------~~~----~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~  146 (393)
T PRK11195         89 ------------------IHP----LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA  146 (393)
T ss_pred             ------------------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              111    1222333444555567778889999999999999999999999999999999999


Q ss_pred             HhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          334 YTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      +.+.   .|...+.+.+.+.+++.+...++||.+
T Consensus       147 l~~~---~~~~~~~i~~~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        147 LADP---HAEAALAVCALIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            9875   466666655555454544444567654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.35  E-value=1.5e-11  Score=116.19  Aligned_cols=158  Identities=16%  Similarity=0.112  Sum_probs=110.3

Q ss_pred             HHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 042372          170 YTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGA  249 (402)
Q Consensus       170 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  249 (402)
                      +....+.|.+.+++|.+..+.+.            ......++..++.++.|+++||+|||+.++.+.++..++.+..++
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~~------------~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~  103 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETAW------------ISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF  103 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHHH------------HHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence            44566778888889988776554            444455555667778999999999999999888777776666554


Q ss_pred             hhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHH
Q 042372          250 RYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAF  329 (402)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~  329 (402)
                      .                     .+.+.......++.+.+.....+....++.+.+| +.|+++.++.+....+|..++|.
T Consensus       104 ~---------------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~  161 (455)
T TIGR00892       104 S---------------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAP  161 (455)
T ss_pred             h---------------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHH
Confidence            3                     1112222222222222222222334456678886 78999999999999999999999


Q ss_pred             hHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          330 GVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +.+.+.+..  +|+.+|++.+++.+++.+..+++
T Consensus       162 l~~~l~~~~--gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       162 LNQYLFESF--GWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHh
Confidence            999888877  89999999988877666555444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.34  E-value=1.7e-11  Score=114.73  Aligned_cols=172  Identities=12%  Similarity=-0.045  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372          165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM  244 (402)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  244 (402)
                      ............|.+.++.+.++.+.+.            ......++.+++.++.|+++||+|||+.+..+..+.+++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~------------~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~   96 (417)
T PRK10489         29 SIFGLGLLGVAVPVQIQMMTGSTLQVGL------------SVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGF   96 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHH------------HHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHH
Confidence            3334444555667777777777665444            7777788888889999999999999999888776666655


Q ss_pred             HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372          245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA  324 (402)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  324 (402)
                      +.+.......  .              ++.+... +..+..+.+.....+....+..|.+|++.|+++.++.+....+|.
T Consensus        97 ~~~~~~~~~~--~--------------~~~~~l~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (417)
T PRK10489         97 IGLALNAFLP--E--------------PSLLAIY-LLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGS  159 (417)
T ss_pred             HHHHHHHHcC--C--------------CcHHHHH-HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHH
Confidence            5443321110  0              1222222 222222222222233445677899999999999999999999999


Q ss_pred             HHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          325 IVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       325 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      .++|.+.+.+.+..  +|++.+++.++..++..+..+.+|+++
T Consensus       160 ~~g~~l~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (417)
T PRK10489        160 VISPALGGLLIAAG--GVAWNYGLAAAGTFITLLPLLRLPALP  200 (417)
T ss_pred             HhHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999988766  788888887777776666666667653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.34  E-value=6.7e-12  Score=115.62  Aligned_cols=159  Identities=15%  Similarity=0.147  Sum_probs=112.7

Q ss_pred             HHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 042372          168 AFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAIL  247 (402)
Q Consensus       168 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  247 (402)
                      ..+....+.|.+.+++|.+..+.+.            ......++..++.+..|.++||+|||+.+..+.++.+++.+..
T Consensus        18 ~~~~~~~~~~~~~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~   85 (377)
T TIGR00890        18 YVYTWTLLAPPLGRYFGVGVTAVAI------------WFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY   85 (377)
T ss_pred             HHhhhhhHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHH
Confidence            3556677788888899998886655            7778888889999999999999999999999988888877666


Q ss_pred             HHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHH
Q 042372          248 GARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVG  327 (402)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~  327 (402)
                      ...                     .+.+.+.+... ..+.+.....+.......+.+| +.|+.+.++......+|..++
T Consensus        86 ~~~---------------------~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~  142 (377)
T TIGR00890        86 AIA---------------------DSLAALYLTYG-LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFIL  142 (377)
T ss_pred             HHH---------------------HHHHHHHHHHH-HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHH
Confidence            654                     22222222222 2222222222233345567777 569999999998888888776


Q ss_pred             HHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          328 AFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +.+.+...+..  +|+..|++.+++.++..+..+++
T Consensus       143 ~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890       143 SPLITSVINLE--GVPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             HHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666665554  89999999888877766655533

>PRK11043 putative transporter; Provisional

Probab=99.34  E-value=3.8e-11  Score=111.77  Aligned_cols=155  Identities=13%  Similarity=0.053  Sum_probs=110.4

Q ss_pred             HhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcccc
Q 042372          176 QKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLR  255 (402)
Q Consensus       176 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  255 (402)
                      .|.+.++++.++.+.+.            ......++..++.++.|+++||+|||+.+..+..+..++.+.....     
T Consensus        29 ~~~i~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----   91 (401)
T PRK11043         29 FKAIQADLQTSASAVSA------------SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----   91 (401)
T ss_pred             HHHHHHHHCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----
Confidence            34556678888876554            6777788888899999999999999999998877776666555442     


Q ss_pred             CCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372          256 GKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT  335 (402)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  335 (402)
                                      .+.+.+.+. .+..+.+.....+....+..|.+|++.++...+.......++..++|.+.+.+.
T Consensus        92 ----------------~~~~~l~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043         92 ----------------ESAAQLLVL-RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             ----------------cCHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            222222222 222222122222234456789999998898888888888899999999999998


Q ss_pred             hhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372          336 QKGDKQIKQSIIALAVVNFLGFLCSFMVPET  366 (402)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et  366 (402)
                      +..  +|+..|++.+++.++..+..++++|.
T Consensus       155 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        155 NHF--GWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             hcC--ChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            877  89999998888777776666555443

>PRK09848 glucuronide transporter; Provisional

Probab=99.34  E-value=1.9e-10  Score=108.71  Aligned_cols=151  Identities=10%  Similarity=-0.039  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          156 LGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      .......++....+.......|.++++ +|.++..            +........++.+++.++.+++.||+|+|+.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~  298 (448)
T PRK09848        231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFL  298 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            333333444444445555556766665 5544332            112333335566777888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh-------
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR-------  307 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------  307 (402)
                      ++.++..++.+.+.+..     .              .+.+. ........+.+.....+..+++.+|..|.+       
T Consensus       299 ~g~~~~~i~~~~~~~~~-----~--------------~~~~~-~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r  358 (448)
T PRK09848        299 IGALLGTCGYLLFFWVS-----V--------------WSLPV-ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVR  358 (448)
T ss_pred             HHHHHHHHHHHHHHHcC-----c--------------hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCcc
Confidence            88877666655444310     0              12222 222222222223333445666677777643       


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372          308 LRSTCHGISAAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       308 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      .+|...|+.+....+|..+++.+.+.+.+..
T Consensus       359 ~~G~~~~~~~~~~klg~aig~~i~g~~l~~~  389 (448)
T PRK09848        359 IEGLTYSLFSFTRKCGQAIGGSIPAFILGLS  389 (448)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4688999999999999999999988877654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.34  E-value=1.7e-11  Score=111.67  Aligned_cols=168  Identities=18%  Similarity=0.237  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          160 STWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      ...+......+......|.+.++.+.++.+.+.            ......++..++.++.|+++||+|||+.+..+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~   73 (352)
T cd06174           6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGL------------IVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLL   73 (352)
T ss_pred             HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHH
Confidence            334445555666677778888888888776554            67777888888999999999999999999999888


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ..++.+.....                     .+. ....+.....+.+.....+....+..|.+|++.|++..++.+..
T Consensus        74 ~~~~~~~~~~~---------------------~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (352)
T cd06174          74 FALGSLLLAFA---------------------SSL-WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG  131 (352)
T ss_pred             HHHHHHHHHHh---------------------ccH-HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHH
Confidence            88777766553                     111 23333333444444445566778889999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      ..+|..+++.+.+.+.+..  +|+..+.+.+++.++..+...++
T Consensus       132 ~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  173 (352)
T cd06174         132 FGLGALLGPLLGGLLAESL--GWRWLFLILAILGLLLALLLLFL  173 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998876  78888888777776665554433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.33  E-value=6.1e-11  Score=110.28  Aligned_cols=176  Identities=11%  Similarity=-0.029  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      ++.++..++...+.........|.+.++++.+..+.+.            ..+...++.+++++..|++.||+|||+.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~------------l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~   72 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAAL------------VQSAFYGGYFIMAIPAAIFMKKLSYKAGIL   72 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            44455555555555555556778888889998886555            778888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      .+.++.+++.+++.....  .                .+. ...+...+..+.+.....+....+..+..|++.|++..+
T Consensus        73 ~g~~l~~~g~~l~~~~~~--~----------------~~~-~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~  133 (410)
T TIGR00885        73 LGLFLYALGAFLFWPAAE--I----------------MNY-TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLN  133 (410)
T ss_pred             HHHHHHHHHHHHHHHHHh--h----------------ccH-HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHH
Confidence            999888887766543211  0                122 222222222222222233344456678889999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhcC------------------------CCchhhhHHHHHHHHHHHHHHh
Q 042372          315 ISAAAGKAGAIVGAFGVQYYTQKGD------------------------KQIKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       315 ~~~~~~~~g~~i~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~  361 (402)
                      +.+....+|..++|.+.+.+.....                        .+|+.+|++.+++.++..++..
T Consensus       134 ~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~  204 (410)
T TIGR00885       134 LAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM  204 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877743210                        0588889888877666554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.32  E-value=5.3e-11  Score=111.92  Aligned_cols=176  Identities=14%  Similarity=0.031  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .....++.++.............|.+.++++.++.+.+.      ...+........+...++.++.|+++||+|||+.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   89 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFAS------LMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL   89 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH------HHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence            455566666666667777778889888888877654321      00111122333444567788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      +.+..+.+++.++.++........              ......+++..+..+.+.....+....+.+|.+|++.|+++.
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~  155 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIG--------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT  155 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHH--------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence            999988888877766542100000              000011223333333333333445567889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHh--------hhcCCCchhhhHHHHH
Q 042372          314 GISAAAGKAGAIVGAFGVQYYT--------QKGDKQIKQSIIALAV  351 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~  351 (402)
                      ++.....++|..+++.+.+.+.        +..  +|+.+|++...
T Consensus       156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~--gWr~~f~~~~~  199 (434)
T PRK15075        156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEW--GWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc--chHHHHHHHHH
Confidence            9999888888877777666543        233  89998886443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.32  E-value=2.6e-10  Score=100.56  Aligned_cols=273  Identities=12%  Similarity=0.035  Sum_probs=160.2

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLH-VYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      .+..|++...++++..+.+++.+...++|.+++|+++..+...-.. ..+++     -...........||.+|...+..
T Consensus       124 aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~-----~~~~~~~~~~~~v~~pYl~~~~~  198 (422)
T COG0738         124 AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA-----QILAIKGADASSVQFPYLILAGL  198 (422)
T ss_pred             ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH-----HHHHHHHHHHHhhhhHHHHHHHH
Confidence            4567889999999999999999999999999999999988741000 00000     00000000123488888776655


Q ss_pred             HHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           83 AALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        83 ~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      .++..+....  +||-+.      ...++                      .+.++....+.++++       .+....+
T Consensus       199 lvll~v~~~~~k~p~~~~------~~~~~----------------------~~~~~~~~~~l~~~~-------~~~~gvl  243 (422)
T COG0738         199 LVLLAVLILLSKLPDLQV------AAPSL----------------------GASGSAGLSSLFQNK-------HLRLGVL  243 (422)
T ss_pred             HHHHHHHHHhccCCcCCc------ccccc----------------------cccccchHHHHHhCh-------HHHHHHH
Confidence            5544433322  343211      00000                      000000111222222       2233333


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      ..++....-.....|++.++.+ .|.+..+...            ..+..+.+.++|.+++.++..|+...+.+....++
T Consensus       244 ~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~------------~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~  311 (422)
T COG0738         244 AIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAY------------YLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALI  311 (422)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            4444444455666778888887 6777665444            77888888999999999999999988888877665


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ..+.++...+.                     ++.  ..+......+.+.....|+.++...+..|. . ....|.....
T Consensus       312 ~ill~~~~~l~---------------------~g~--v~~~~l~~ig~F~simfPTIfslal~~l~~-~-ts~~s~~l~m  366 (422)
T COG0738         312 AILLLLAVALI---------------------GGV--VALYALFLIGLFNSIMFPTIFSLALKNLGE-H-TSVGSGLLVM  366 (422)
T ss_pred             HHHHHHHHHHh---------------------cCh--HHHHHHHHHHHHhHHHHHHHHHHHHhccCc-c-ccccceeeee
Confidence            55555555553                     221  222222333344556678888888888883 3 2333344445


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHH
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFL  355 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (402)
                      ..+|+++.|.+.|++.|..  +....+.....++.+
T Consensus       367 aivGGAiiP~l~G~i~d~~--g~~~~~~~~pllc~l  400 (422)
T COG0738         367 AIVGGAIIPPLQGVIADMF--GIQLTFLIVPLLCYL  400 (422)
T ss_pred             heecchHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Confidence            5678999999999999987  444444433333333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.32  E-value=1.6e-10  Score=106.24  Aligned_cols=168  Identities=13%  Similarity=0.107  Sum_probs=105.4

Q ss_pred             HHHHHHHhHhhhhhhcC-CchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH
Q 042372          168 AFYTINLTQKDIYPATG-IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI  246 (402)
Q Consensus       168 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  246 (402)
                      ..-....|.+.++++.| .+....            +....+..++.++.....+++..|+|.|++++++.+..++=..+
T Consensus       222 ~~~~~~~f~~~yl~~~gg~~~~~~------------g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l  289 (400)
T PF03825_consen  222 SHAAYYTFFSIYLQELGGYSGSTI------------GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL  289 (400)
T ss_pred             HHHHHHHHHHHHHHHcccchhhHH------------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            33444556677888877 554432            22556777888898889999999999999999887666555555


Q ss_pred             HHHhhccccCCCCCCCCCCCCccCCChhHHHH-HHHH-HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH-HHHH
Q 042372          247 LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFM-ILYG-LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA-GKAG  323 (402)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g  323 (402)
                      ++....                   +...... .... +.-+............|+.+..|++.|+++.++.+.. ..+|
T Consensus       290 ~a~~~~-------------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg  350 (400)
T PF03825_consen  290 YAYFSD-------------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLG  350 (400)
T ss_pred             HHHhcC-------------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHH
Confidence            444210                   1111111 1110 1111111112234556789999999999999998875 5689


Q ss_pred             HHHHHHhHHHHhhhcCC----CchhhhHHHHHHHHHHHHHHhhc-ccC
Q 042372          324 AIVGAFGVQYYTQKGDK----QIKQSIIALAVVNFLGFLCSFMV-PET  366 (402)
Q Consensus       324 ~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l-~et  366 (402)
                      ..+|.++.|++.+..+.    .|...+.+.+++.++..++.+.+ +|+
T Consensus       351 ~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  351 GAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999998732    23344555555555555544433 544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.32  E-value=9.1e-11  Score=106.16  Aligned_cols=181  Identities=14%  Similarity=0.063  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      ++...+...+....|+......+.|+..+.-+.....        ..-+...+...+..++...+.+++.+|+|.|+.++
T Consensus       222 fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~--------~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll  293 (412)
T PF01306_consen  222 FWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGN--------QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL  293 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCh--------hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH
Confidence            4444443444334455554445555554322222111        13344777788888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      ++..++++=....++.                     ++.+....+ -.+-+.-........+-|+++.+|++..++...
T Consensus       294 lag~i~~iRi~~~~~~---------------------~~~~~i~~~-klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~  351 (412)
T PF01306_consen  294 LAGVIMAIRIIGSGFA---------------------TNPWVISLI-KLLHALEFPLLLVAAFKYITAHFDKRLSATLYL  351 (412)
T ss_dssp             HHHHHHHHHHHHHHT-----------------------SHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh---------------------cchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHH
Confidence            9987777766665553                     222222222 221111111111234568899999999999888


Q ss_pred             HH-HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372          315 IS-AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETN  367 (402)
Q Consensus       315 ~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~  367 (402)
                      +. +....++.++.+.+.|.+.|..  |++.+|++++.+.++..++..+. ++.+
T Consensus       352 v~~~~~~~~~~~i~s~~~G~lyd~~--G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  352 VGFQFAKQIGIIILSPLAGYLYDRI--GFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHHHHHHhhhHHhhHhhc--CcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            85 5778889999999999999998  88889999998888777777655 4433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00897 2A0118 polyol permease family

Probab=99.31  E-value=5.9e-11  Score=110.49  Aligned_cols=166  Identities=13%  Similarity=-0.017  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      +....+..+......+....+.+.+.+++|.+..+.+.            ......++..++.++.|++.||+|||+.+.
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~   82 (402)
T TIGR00897        15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSAS------------AFTLYGIAAAISAWISGVVAEIIGPLKTMM   82 (402)
T ss_pred             hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHH------------HHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            33334444444444444555667777888998886655            777788888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      .+..+.+++.++......  ..               .+. ....+.....+.+.....+....+..+.+|+++|+++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~--~~---------------~~~-~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g  144 (402)
T TIGR00897        83 IGLLLWCVGHAAFIVFGL--GH---------------ANY-PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVG  144 (402)
T ss_pred             HHHHHHHHHHHHHHHHhc--cC---------------ccH-HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHH
Confidence            988877776554322110  00               112 222222222222222222334455678899999999999


Q ss_pred             HHHHHHHHHH-HHHHHhHHHHhhhcCCCchhhhHHHHHH
Q 042372          315 ISAAAGKAGA-IVGAFGVQYYTQKGDKQIKQSIIALAVV  352 (402)
Q Consensus       315 ~~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (402)
                      +.+....+|. .++|.+.+.+.+..  +++..++.....
T Consensus       145 ~~~~~~~~g~~~~g~~~~~~l~~~~--g~~~~~~~~~~~  181 (402)
T TIGR00897       145 WFWAVYSIGIGVFGSYYSSYAIPAF--GEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHH
Confidence            9999999886 57888888877665  655444443333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.9e-10  Score=96.25  Aligned_cols=174  Identities=10%  Similarity=0.049  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII  232 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  232 (402)
                      .++.+....++.....+-+....|.++++ +|+|+..++-            +.+.....+.+.+++.|.++||+|++..
T Consensus       265 pfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~------------i~s~vy~Isav~spvfg~i~Dk~G~n~~  332 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGN------------ILSTVYGISAVLSPVFGAISDKYGFNLW  332 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccc------------hhhhhhhhhhhhhhhHHHhHhhhcceeh
Confidence            34444444444444445555556777765 8999886543            4444455566677889999999999977


Q ss_pred             HHHHHHHHHH-HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372          233 QLGGFLLMSI-CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST  311 (402)
Q Consensus       233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  311 (402)
                      .+.+..+..+ +-..+.+..                    .+++....++++......    ...|..++.+.|.+.-|+
T Consensus       333 wv~~a~~~tl~~H~~l~Ft~--------------------lsPy~~m~~lGLsysllA----cslWP~va~~vpE~qLGT  388 (459)
T KOG4686|consen  333 WVASACILTLLGHSGLFFTF--------------------LSPYTSMTFLGLSYSLLA----CSLWPCVASLVPEEQLGT  388 (459)
T ss_pred             hHHHHHHHHHHHhhhHHhhh--------------------ccHHHHHHHHhhhHHHHH----HHHhhhhhhhCCHHHhcc
Confidence            6655433222 222222211                    122222222222222211    235566688899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCch---hhhHHHHHHHHHHHHHHhhcc
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIK---QSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~  364 (402)
                      +.|+++.++++|-.+.|.+.+.+.+..+ ++.   ..|++...+++++..+.+.+.
T Consensus       389 aygf~qsIqNLgla~i~Iiag~i~d~~g-~y~~le~ffl~~~~~aL~svgil~~~N  443 (459)
T KOG4686|consen  389 AYGFIQSIQNLGLAFIPIIAGFIADGDG-SYDNLEAFFLIIGLMALTSVGILFYLN  443 (459)
T ss_pred             hHHHHHHHHhhhhhHHhhhhheeecCCC-chhhHHHHHHHHHHHHHHHHHHHhhee
Confidence            9999999999999999999999988764 232   334444445555555555553

>PRK09952 shikimate transporter; Provisional

Probab=99.31  E-value=8.9e-11  Score=110.42  Aligned_cols=148  Identities=14%  Similarity=0.036  Sum_probs=97.9

Q ss_pred             HHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHH
Q 042372          206 FLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTL  285 (402)
Q Consensus       206 ~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (402)
                      .....++..+|.++.|+++||+|||+.++.+.++.+++.++.++...+....              .......++.....
T Consensus        70 ~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~R~l~  135 (438)
T PRK09952         70 FGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIG--------------WWAPVLLVTLRAIQ  135 (438)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHH--------------HHHHHHHHHHHHHH
Confidence            3445577788889999999999999999999888888877776642210000              00011233334444


Q ss_pred             HHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc------CCCchhhhHHHHHHHHHHHHH
Q 042372          286 FFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG------DKQIKQSIIALAVVNFLGFLC  359 (402)
Q Consensus       286 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  359 (402)
                      +.+..+..+....+..|.+|++.|+...+..+....+|..+++.+...+....      ..+|+.+|++.++..++...+
T Consensus       136 G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l  215 (438)
T PRK09952        136 GFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWV  215 (438)
T ss_pred             HhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHH
Confidence            55455555666788899999999999998888888888888776665544211      118999998877665543333


Q ss_pred             HhhcccCC
Q 042372          360 SFMVPETN  367 (402)
Q Consensus       360 ~~~l~et~  367 (402)
                      ...+||++
T Consensus       216 ~~~~~es~  223 (438)
T PRK09952        216 RNGMEESA  223 (438)
T ss_pred             HHhCCCCh
Confidence            22346653

>TIGR00898 2A0119 cation transport protein

Probab=99.30  E-value=9.2e-12  Score=119.57  Aligned_cols=155  Identities=17%  Similarity=0.199  Sum_probs=115.9

Q ss_pred             HhHhhhhhhcCCc---hhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372          174 LTQKDIYPATGIV---RKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR  250 (402)
Q Consensus       174 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  250 (402)
                      .+.+.+.++++++   +.+.+.            ..+...++.+++.++.|+++||+|||+.++++.++.+++.++..+.
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~------------~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~  177 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDL------------TQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS  177 (505)
T ss_pred             cccccEEEEecceechHHHHHH------------HHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc
Confidence            3456666777777   444333            7778888899999999999999999999999888777777666553


Q ss_pred             hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHh
Q 042372          251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFG  330 (402)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~  330 (402)
                                           .+. ...++..++.+++..+..+...+++.|.+|++.|+.+.++......+|.++++.+
T Consensus       178 ---------------------~~~-~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~  235 (505)
T TIGR00898       178 ---------------------PNY-TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLV  235 (505)
T ss_pred             ---------------------ccH-HHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                 222 3333344444554555567788899999999999999999988888888888877


Q ss_pred             HHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          331 VQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      ...+.     +|+..+++.++..++..+..+++||+.
T Consensus       236 ~~~~~-----~wr~~~~~~~i~~~~~~~~~~~~~esp  267 (505)
T TIGR00898       236 AYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESP  267 (505)
T ss_pred             HHHhh-----HHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            65443     588999988888777777776778864

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.29  E-value=9.5e-11  Score=104.58  Aligned_cols=283  Identities=13%  Similarity=0.027  Sum_probs=161.1

Q ss_pred             HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhH--HHHHhhHHHH
Q 042372            7 VIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRI--VLMFGAVPAA   84 (402)
Q Consensus         7 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~--~f~~~~i~~~   84 (402)
                      -+..-|+|+++|..+..+-.++..+|.+++.++...+...-.                 ..++..|-.  +|+.....+.
T Consensus       163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~-----------------~~~~~~~~~~~~f~~~~~l~~  225 (480)
T KOG2563|consen  163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSK-----------------DSEDNSWLFFTLFLGVECLAA  225 (480)
T ss_pred             HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCC-----------------CcchhHHHHHHHHHHHHHHHH
Confidence            345668999999999999999999999999999888863110                 124556765  3443333322


Q ss_pred             H-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           85 L-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        85 ~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      + ..+..+.-+|.|+.   .....++..+                       ..+..+..++-...   +.++...+.+.
T Consensus       226 l~l~l~~~~~~~~P~t---Pps~s~~~~~-----------------------~~~f~~si~~~~~n---~~F~il~~~yg  276 (480)
T KOG2563|consen  226 LLLALVLFVFTKKPPT---PPSASQAALQ-----------------------DASFPKSIKSCFKN---RQFIILAICYG  276 (480)
T ss_pred             HHHHHHHHhcCCCCCC---CCchhHhhhh-----------------------cCcHHHHHHHHHcC---ccHHHHHHHHh
Confidence            2 22222333333321   0000000000                       00111111111111   24555555555


Q ss_pred             HHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH-HHHHHHHHHHH
Q 042372          164 LLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI-IQLGGFLLMSI  242 (402)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-~~~~~~~~~~~  242 (402)
                      .....+++....+...+..-|++...+|.            ......+++++++.++|.+.||.+.-+ .+++......+
T Consensus       277 i~~g~F~~l~~~l~~~l~~sgY~~~~aG~------------ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v  344 (480)
T KOG2563|consen  277 IGLGLFNSLSTLLNLALCPSGYEGVFAGY------------IGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV  344 (480)
T ss_pred             hhHHHHHHHHHHhhhccccccCCccccch------------hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            55566677766665444445666554444            777788888999999999999987643 44444433333


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA  322 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  322 (402)
                      +...+......                  ....+.+.......+++..+..|+..-+..|..-|..-++..|+.+..+.+
T Consensus       345 ~~~~l~~~t~~------------------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~  406 (480)
T KOG2563|consen  345 GTLMLLTCTLF------------------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQI  406 (480)
T ss_pred             HHHHHHHhhcc------------------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhH
Confidence            32222221111                  111123333444455557788888888888886556668888999999988


Q ss_pred             HHHHHHHhHHHHhhhcCC-C-chhhhHHHHHHHHHHHHHHhhccc
Q 042372          323 GAIVGAFGVQYYTQKGDK-Q-IKQSIIALAVVNFLGFLCSFMVPE  365 (402)
Q Consensus       323 g~~i~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~e  365 (402)
                      .+++-.++-+...+..+. + +...-+.+....++..++..++++
T Consensus       407 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~  451 (480)
T KOG2563|consen  407 FGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP  451 (480)
T ss_pred             HHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence            888888777777765421 2 333334445555566666666643

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.27  E-value=2.3e-10  Score=101.61  Aligned_cols=175  Identities=15%  Similarity=0.111  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      ..+.............+......+.+-+++++|+.|.++            +..+..+...+..+..|++.||+|.|+..
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~l------------l~aiPil~GallRl~~g~l~drfGgR~~~   82 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGL------------LVAIPILVGALLRLPYGFLTDRFGGRKWT   82 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHH------------HHHHHHHHhHHHHHHHHhhhcccCchHHH
Confidence            333333333333334444444455566779999998766            77778888888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      ..+.++..+-++.+++....                  .+. +..+.+.++.+. ..+..++...++++.||++.+|.+.
T Consensus        83 ~~s~~l~~IP~~~~~~a~~~------------------~~~-~~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~Al  142 (417)
T COG2223          83 ILSMLLLLIPCLGLAFAVTY------------------PST-WQLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLAL  142 (417)
T ss_pred             HHHHHHHHHHHHHHHHHccC------------------Cch-HHHHHHHHHHhc-ccceehcccccccccCChhhhhHHH
Confidence            99988877777776665331                  111 233333333333 3444557778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCC---chhhhHHHHHHHHHHHHHHhhc
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQ---IKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      |+.. .+++|..+..++.+.+....  +   |+.+..+..+..++..+..++.
T Consensus       143 GI~g-~GN~G~av~q~~~P~v~~~~--g~~~w~~~~~i~~~~l~v~~v~~~~~  192 (417)
T COG2223         143 GIAG-AGNLGVAVAQLVAPLVAVAF--GFLAWRNVAGIYVVALAIAAVLAWLG  192 (417)
T ss_pred             HHhc-cccccHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 99999999999999988877  6   8888888888888877776654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=1e-11  Score=108.77  Aligned_cols=268  Identities=12%  Similarity=0.066  Sum_probs=156.5

Q ss_pred             chhHHhhhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            4 LSAVIMSEYANKRT-RGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         4 ~~~~~i~e~~~~~~-rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      ++.++++|.+|+++ |++++|+.-.+.++|.++||.+|+.+.                       +..|.+.+|++.++.
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY-----------------------e~~Gk~aPFlVL~~v  235 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY-----------------------EFAGKSAPFLVLAIV  235 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH-----------------------hhcCCcCcHHHHHHH
Confidence            46788999998764 899999999999999999999999998                       778899999999999


Q ss_pred             HHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           83 AALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        83 ~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      +++-..+.+++-|.-+     .+.++                        .++....+++++.++.      ........
T Consensus       236 ~Lld~~L~l~vi~p~~-----~~~~~------------------------~~~~~~~~~Ll~dP~I------~~~agai~  280 (464)
T KOG3764|consen  236 LLLDGALQLLVIEPTE-----MDPDS------------------------TEQGTPMWSLLMDPYI------LLIAGAIT  280 (464)
T ss_pred             HHHHHHHHHheeCccc-----cCccc------------------------cccCccHHHHHhCchH------hhhhcchh
Confidence            8887766666544211     11100                        0112233333343321      11222222


Q ss_pred             HHHHHHHHHHHHhHhh-hhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc--hhHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKD-IYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG--RFIIQLGGFLL  239 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~~~~~~~~  239 (402)
                      ++.....+ .--.++. ..+++.-+.-+.+.            ......+...+++.+.|.+.||++  |-.....+.+.
T Consensus       281 ~~n~~laf-LePtlslwm~e~m~~p~w~~G~------------~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~  347 (464)
T KOG3764|consen  281 FSNSSLAF-LEPTLSLWMLETMFTPGWEVGL------------AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLAT  347 (464)
T ss_pred             hccchHHH-hCcccHHHHHHhccCCCcceee------------eecccccchhccCchHHHHHHhcCchhHHHHHHHHHH
Confidence            22111111 1111122 22334322213333            666677888899999999999999  43232333332


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh---hhhhhHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR---LRSTCHGIS  316 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~  316 (402)
                      ..+++....+...+                  ...+......++..........|.. .+..|.-..+   .-|...++.
T Consensus       348 ~G~~~~~iP~~~~~------------------~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIa  408 (464)
T KOG3764|consen  348 VGVSSGPIPFATSI------------------AQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIA  408 (464)
T ss_pred             HHHHhchhHhhhhH------------------HHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHH
Confidence            22222222221100                  0111111122222222223333333 2333332223   457888999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          317 AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       317 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .....+|.++||.+.+.+.+..  |+.+...+.++..++...++.++
T Consensus       409 d~a~sla~a~GP~~gg~iv~~i--GF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  409 DAAFSLAYAIGPTFGGSLVEAI--GFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHhhhccccccchheeeh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988  88888888888888877666654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.27  E-value=1.4e-10  Score=107.20  Aligned_cols=150  Identities=13%  Similarity=-0.008  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .++.++...+...........+.|.+.+++|.+..+.+.            ......++..++.++.|+++||+|||+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~------------~~s~~~l~~~~~~~~~g~l~dr~g~k~~~   74 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGV------------VSSSYFTGNLVGTLLAGYVIKRIGFNRSY   74 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            455555556666666667778889999999998876555            77778888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      ..+.++.+++.......                     ++.+.+. +..+..+.+.....+.......+..|++.|+++.
T Consensus        75 ~~~~~~~~~~~~~~~~~---------------------~~~~~l~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (381)
T PRK03633         75 YLASLIFAAGCAGLGLM---------------------VGFWSWL-AWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLL  132 (381)
T ss_pred             HHHHHHHHHHHHHHHHh---------------------ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99888877776665543                     2222222 2333333323333333334456778888999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhh
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQK  337 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~  337 (402)
                      +.......+|..+++.+.+.+.+.
T Consensus       133 ~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        133 AAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999999999887664

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.27  E-value=1.4e-10  Score=106.93  Aligned_cols=169  Identities=12%  Similarity=0.018  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHH-HHHHH
Q 042372          163 FLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLG-GFLLM  240 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~-~~~~~  240 (402)
                      +............+|.++ +++|.+..+.+.            ......+...+..++.|.++||+|||+.++. +....
T Consensus         7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~   74 (375)
T TIGR00899         7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGL------------FYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLA   74 (375)
T ss_pred             HHHHHHHHHHhhHHHHHHHcccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            333444444555566665 458888876554            5566667777778889999999999887654 43333


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh--HHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC--HGISAA  318 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~  318 (402)
                      .++.++....                     ++.+.. .+.....+.......+....+..|..|++.|+.+  .+....
T Consensus        75 ~~~~~~~~~~---------------------~~~~~l-~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (375)
T TIGR00899        75 ALACLLFAWN---------------------RNYFLL-LVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRA  132 (375)
T ss_pred             HHHHHHHHhc---------------------chHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence            3333333332                     222222 2222222222233445555566777777766644  577777


Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCC
Q 042372          319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETN  367 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~  367 (402)
                      ...+|..++|.+.+.+.+..  +|+..|++.+++.++..++.++ +||.+
T Consensus       133 ~~~~g~~ig~~~~~~l~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       133 QISLAWVIGPPLAFWLALGF--GFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHhHHHHHhhhHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            78889999999999888776  8999999988887777666554 57654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.26  E-value=1.8e-10  Score=109.78  Aligned_cols=179  Identities=15%  Similarity=0.090  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-----c
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-----G  228 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-----g  228 (402)
                      ..+..+...+.++.........+|.++++.|.+..+.+.            ...+. .. .++.++.+.++||+     |
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~------------~~~~~-~~-~~~~~l~gpl~Dr~~~~~~G   78 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGF------------FSLVG-QA-YVFKFLWSPLMDRYTPPFLG   78 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHH-HH-HHHHHHHHHHHHcccccCCC
Confidence            345555566666666667777788888888888766433            21111 11 14667899999999     9


Q ss_pred             hhHH-HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh
Q 042372          229 RFII-QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR  307 (402)
Q Consensus       229 rr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  307 (402)
                      ||+. ++.+.+..+++...+++...    .              .+. .......+...++.....+...++..|.+|++
T Consensus        79 rrr~~ll~~~i~~~~~~~~~a~~~~----~--------------~~l-~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         79 RRRGWLLATQLLLLVAIAAMGFLEP----G--------------TQL-RWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHcCC----c--------------chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            9885 55665555555555444211    0              122 22222222233333444556677889999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhHHHHhh-hcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          308 LRSTCHGISAAAGKAGAIVGAFGVQYYTQ-KGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       308 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      .|+.+.++......+|..+++.+..++.+ ..  +|+..|++.+++.++..+..+++||+.
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~--GWr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYL--GWQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999998888887 34  899999998888777766666667754

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.26  E-value=1.2e-10  Score=107.95  Aligned_cols=154  Identities=13%  Similarity=0.043  Sum_probs=113.4

Q ss_pred             HHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 042372          169 FYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILG  248 (402)
Q Consensus       169 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  248 (402)
                      ++.....+|.+.++++++..+.+.            ..+...++..++.++.|+++||+|||+++..+..+.+++.+..+
T Consensus        25 ~~~~~~~lp~i~~~~~~s~~~~g~------------~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~   92 (393)
T PRK09705         25 LTSVGPLLPQLRQASGMSFSVAAL------------LTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRE   92 (393)
T ss_pred             hhccchhHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            355667788888899999887655            67777778888889999999999999999999999999888877


Q ss_pred             HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372          249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA  328 (402)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~  328 (402)
                      +.                     ++.+.+ ++..++.+.+.....+....++.+.+| +.|+.+.++......+|..+++
T Consensus        93 ~a---------------------~~~~~l-l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~  149 (393)
T PRK09705         93 LY---------------------PQSALL-LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGA  149 (393)
T ss_pred             HC---------------------cchHHH-HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHH
Confidence            64                     222223 333333333333333445556788887 7799999999998889999999


Q ss_pred             HhHHHHhhhcCCCchhhhHHHHHHHHHHHH
Q 042372          329 FGVQYYTQKGDKQIKQSIIALAVVNFLGFL  358 (402)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (402)
                      .+.+.+.++.. +|+..+.++++..++..+
T Consensus       150 ~~~~~l~~~~~-~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        150 AITPWLVQHSE-TWYQTLAWWALPAVVALF  178 (393)
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence            99988877643 688877766655544433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.26  E-value=2.5e-10  Score=105.79  Aligned_cols=180  Identities=11%  Similarity=0.032  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII  232 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  232 (402)
                      .++...+..+......+......+.+.+ +++++..+.+.            ..++..+...++.+..|++.||+|.|++
T Consensus        35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~------------l~ai~~l~~al~rip~G~l~Dr~G~R~v  102 (462)
T PRK15034         35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFL------------LTALPSVSGALLRVPYSFMVPIFGGRRW  102 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence            4444444444444444444444555555 68899887655            5555566666677778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC  312 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  312 (402)
                      +.++.++.++..+...+.....                 ...+...++...+.+.+ .+..+.....+++.+|++.||++
T Consensus       103 ~~~~~ll~~i~~~~~~~a~~~~-----------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A  164 (462)
T PRK15034        103 TVFSTAILIIPCVWLGIAVQNP-----------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSA  164 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHccc-----------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHH
Confidence            9998888777777666531100                 11222333333333332 33445666778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHh-----hhcC-----------CCchhhhHHHHHHHHHHHHHHhhc
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYT-----QKGD-----------KQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .|+....+++|..+++++.+.+.     ...+           .+++.+.++..++.++..++.++.
T Consensus       165 ~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        165 LGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998778888877766655433     2110           036666677777776666666654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=3.3e-11  Score=104.98  Aligned_cols=113  Identities=14%  Similarity=0.038  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHH
Q 042372          201 ISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMIL  280 (402)
Q Consensus       201 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (402)
                      .++.....+.+.+++.++..|.++||+|||.+++++....++...+.+..                      ......+.
T Consensus        69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S----------------------~~F~afv~  126 (451)
T KOG2615|consen   69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS----------------------RNFAAFVL  126 (451)
T ss_pred             hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHH
Confidence            45558888899999999999999999999999999988888776666653                      22222222


Q ss_pred             HHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh
Q 042372          281 YGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ  336 (402)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  336 (402)
                      ..+..+. .-+...+..++++|+++++.|+.+++...+...+|.++||.+.+++..
T Consensus       127 aR~l~Gi-~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  127 ARFLGGI-FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHhhhh-ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            2333333 445556788899999999999999999999999999999999999887

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.23  E-value=6.3e-11  Score=92.60  Aligned_cols=133  Identities=18%  Similarity=0.215  Sum_probs=96.4

Q ss_pred             HHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHh
Q 042372          209 ALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFA  288 (402)
Q Consensus       209 ~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (402)
                      ..++.+++.++.+++.||+|||+.+..+.....++.+.....                     .+.+.... .....+..
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~-~~~~~g~~   64 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---------------------SNITVLII-ARFLQGFG   64 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHH-HHHHHHHH
Confidence            345566777789999999999999988877766666555442                     11222222 22222222


Q ss_pred             hcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-cc
Q 042372          289 NFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PE  365 (402)
Q Consensus       289 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e  365 (402)
                      .....+....+..|.+|++.|+++.++.+....++..+++.+.+.+.+..  +|+..+.+.+++.+++.+..+++ ||
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        65 AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--GWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc--chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            33334566677899999999999999999999999999999999988766  78888888887777776666654 54

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.23  E-value=3.1e-10  Score=105.70  Aligned_cols=176  Identities=11%  Similarity=0.029  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-----chhH-H
Q 042372          159 TSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-----GRFI-I  232 (402)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-----grr~-~  232 (402)
                      +..++.++..+.....-+|.++++.|++..+.++            .......  .+..++.|+++||+     |||+ .
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~------------~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~   70 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGF------------FSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGW   70 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHH--HHHHHHHHHHHHcccccCCCcchhH
Confidence            3455566666666777789999999999998664            2222222  35667899999999     7765 6


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC  312 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  312 (402)
                      ++++.++.++++..+.+...    .              .+.+. +....+..........+...+++.|.+|+++|+.+
T Consensus        71 l~~~~~~~~l~~~~l~~~~~----~--------------~~~~~-l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~  131 (402)
T PRK11902         71 LLLTQVGLAASIAAMAFCPP----H--------------AALWP-LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAG  131 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCc----c--------------chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHH
Confidence            66666666666665544311    0              12222 22222222333444556677888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCCC
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETNG  368 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~~  368 (402)
                      .++......+|..+++.+...+.+... +|+..|++.+++.++..+..+++||++.
T Consensus       132 ~~~~~~g~~~g~i~g~~l~~~l~~~~~-gw~~~f~i~a~~~l~~~l~~~~~~e~~~  186 (402)
T PRK11902        132 AAVKVLGYRLAMLVSGGLALWLADRVL-GWGNTYLLMAGLMLAGALTTLWAPEPEV  186 (402)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            999999889999999988888877422 8999999988877766665555676543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.22  E-value=4.4e-10  Score=102.62  Aligned_cols=158  Identities=11%  Similarity=0.009  Sum_probs=116.3

Q ss_pred             HHHhHhhhhhhcCCchhh-hhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372          172 INLTQKDIYPATGIVRKA-AAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR  250 (402)
Q Consensus       172 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  250 (402)
                      ..+..|.+.+++|++..+ .+.            +......+..+..+.+|+++||+|-|+++.++.+..++..+++++.
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~------------I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa  112 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNE------------IIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG  112 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcch------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            344457777789999887 554            6667777777778889999999999999999988888888887774


Q ss_pred             hccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHh
Q 042372          251 YDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFG  330 (402)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~  330 (402)
                                           .+ ...+.+.-++.+.+..+.. ....++...+|++.|+++.|+.+....+|.++++.+
T Consensus       113 ---------------------~S-l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L  169 (511)
T TIGR00806       113 ---------------------TS-VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVL  169 (511)
T ss_pred             ---------------------HH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 22 2333334444444444444 677788999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCchhh---hHHHHHHHHHHHHHHhhcccCC
Q 042372          331 VQYYTQKGDKQIKQS---IIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       331 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      .+++. ..  +|+..   .++......+++++.+++|..+
T Consensus       170 ~qll~-s~--gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~  206 (511)
T TIGR00806       170 GQLLV-TL--GWISYSTLNIISLVFMTFSVFLALFLKRPK  206 (511)
T ss_pred             HHHHH-hc--CchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            99844 34  66643   3344455556677777887433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.22  E-value=9.1e-11  Score=108.29  Aligned_cols=145  Identities=16%  Similarity=0.107  Sum_probs=103.3

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ...+..++.++|+++.++++||+|||..++++.++..++.++......                   .....++++-.+.
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-------------------~~~~e~li~GR~i  125 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-------------------APSFEMLILGRLI  125 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-------------------hhhHHHHHHHHHH
Confidence            666778999999999999999999999998888777777666655433                   1222233333333


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH-HHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV-QYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .+............|..|..|.+.||....+......+|..++..+. +.+.... +.|...+.+..+.+++..+...++
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~-~~W~~l~~~~~i~~~~~l~~l~~~  204 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTE-DLWPYLLAFPLIPALLQLALLPFL  204 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCC-cchHHHHHHHHHHHHHHHHHHhcC
Confidence            33222222334556789999999999999999999888888885443 3343322 268888888888888888888889


Q ss_pred             ccCCCC
Q 042372          364 PETNGL  369 (402)
Q Consensus       364 ~et~~~  369 (402)
                      ||+.+.
T Consensus       205 PESPk~  210 (485)
T KOG0569|consen  205 PESPKY  210 (485)
T ss_pred             CCCcch
Confidence            998654

>PRK10133 L-fucose transporter; Provisional

Probab=99.21  E-value=5.8e-10  Score=104.71  Aligned_cols=151  Identities=12%  Similarity=-0.006  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .+..+..+++...+.........|.+.++++.++.+.+.            ......++..++.++.|+++||+|||+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl------------~~~~~~~g~~i~~~~~g~l~dr~G~r~~l   94 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAGI   94 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            445555666666667777888889988889998886655            77778888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      ..+..+.+++.+++.....  .                .+. ...++..+..+.+.....+....++.|..|.+.|....
T Consensus        95 ~~g~~~~~~~~~l~~~~~~--a----------------~~~-~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~  155 (438)
T PRK10133         95 ITGLFLYALGAALFWPAAE--I----------------MNY-TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL  155 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHh--c----------------CCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHH
Confidence            9999888888766432111  0                122 22222233333322333334455567777777777778


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHh
Q 042372          314 GISAAAGKAGAIVGAFGVQYYT  335 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~  335 (402)
                      ++.+....+|..+++.+.+.+.
T Consensus       156 s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        156 NLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998776543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.21  E-value=1e-10  Score=114.09  Aligned_cols=184  Identities=10%  Similarity=-0.001  Sum_probs=125.7

Q ss_pred             HHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 042372          172 INLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARY  251 (402)
Q Consensus       172 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  251 (402)
                      .....+.+-+++++++.+.+.            +.+...++.+++.++.+++.||.|||+.+.++.++++++.++++++.
T Consensus        52 ~~~~l~~iek~F~lss~~~G~------------i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph  119 (633)
T TIGR00805        52 VNSSLTTIERRFKLSTSSSGL------------INGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH  119 (633)
T ss_pred             HHhhchhhhhhhCCCCCccee------------eeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence            334456666778988887665            67777788888888999999999999999999999999988887764


Q ss_pred             ccccCC------------------CCC-C---C-------CCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecc
Q 042372          252 DSLRGK------------------KCD-A---K-------KDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAE  302 (402)
Q Consensus       252 ~~~~~~------------------~~~-~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  302 (402)
                      .....-                  -+. +   .       .++..+..+...+..+++..++.+.+.....+...+++.|
T Consensus       120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d  199 (633)
T TIGR00805       120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD  199 (633)
T ss_pred             HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence            211000                  000 0   0       0000000001123334445555566666667788899999


Q ss_pred             cCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCC--------------------CchhhhHHHHHHHHHHHHHHhh
Q 042372          303 LFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK--------------------QIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       303 ~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      .+|++.|+...++.+....+|..+|+.+.+.+.+...+                    .|+..|++.+++.++..+..++
T Consensus       200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998887754210                    2566677777777766655556


Q ss_pred             cccCC
Q 042372          363 VPETN  367 (402)
Q Consensus       363 l~et~  367 (402)
                      +|++.
T Consensus       280 ~p~~l  284 (633)
T TIGR00805       280 FPKAL  284 (633)
T ss_pred             Ccccc
Confidence            66554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.20  E-value=1.3e-10  Score=111.87  Aligned_cols=137  Identities=20%  Similarity=0.240  Sum_probs=114.0

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ...+..++.++|+++.|.++||+|||++++++.++..++.+..++.                      ..+....++.++
T Consensus       123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a----------------------~~~~~~~~~Rfl  180 (521)
T KOG0255|consen  123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA----------------------PNYWMFLIFRFL  180 (521)
T ss_pred             HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh----------------------CcHHHHHHHHHH
Confidence            6777888999999999999999999999999999988888776664                      334555566666


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                      .+++..+...+.+.+.+|+++++.|+.+..+ ....+.++.+++...+++..    +|++.+++..+..++.+++.++.|
T Consensus       181 ~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~  255 (521)
T KOG0255|consen  181 SGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPP  255 (521)
T ss_pred             HHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccC
Confidence            6666777778889999999999999999999 88888899999999988887    899999998888887777744446


Q ss_pred             cCCC
Q 042372          365 ETNG  368 (402)
Q Consensus       365 et~~  368 (402)
                      |+++
T Consensus       256 Es~r  259 (521)
T KOG0255|consen  256 ESPR  259 (521)
T ss_pred             cChH
Confidence            8754

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.18  E-value=4.4e-10  Score=105.34  Aligned_cols=175  Identities=9%  Similarity=-0.071  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      ++......++..........+.|.++++ +|++..+.+.            ..+...++..++.++.|+++||+|||+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~------------~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~   79 (420)
T PRK09528         12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGI------------IFSANSLFALLFQPLYGLISDKLGLKKHL   79 (420)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence            4444445555555555666777777776 8999887665            78888888999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhH-HHHHHHHHHHHHhhcCCcccceeeecccCc--hhhhh
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHA-WFMILYGLTLFFANFGPNSTTFIVPAELFP--ARLRS  310 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~  310 (402)
                      +++..+.+++...+......                  .... ...............+.. .......+..+  .+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  140 (420)
T PRK09528         80 LWIISGLLVLFGPFFIYVFA------------------PLLQYNILLGAIVGGIYLGFGFL-AGAGAIEAYIERVSRRSG  140 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhhhhhc-cchhhhhhHHHHHHhhcc
Confidence            87655444333221111000                  0000 001101111111111111 11111122222  23456


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      ...|.......+|..++|.+.+.+.+.   +|+.+|++.+++.++..++.+++
T Consensus       141 ~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        141 FEYGRARMWGSLGWALCAFIAGILFNI---NPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             ccchhhHHhhhHHHHHHHHHHHHHHhc---CchHhHHHHHHHHHHHHHHHhcc
Confidence            677888888899999999999988764   78888888887777766666554

>PTZ00207 hypothetical protein; Provisional

Probab=99.17  E-value=1.8e-09  Score=102.97  Aligned_cols=182  Identities=16%  Similarity=0.056  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhc-CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh--
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPAT-GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF--  230 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr--  230 (402)
                      .+|.++...++..........-+..+.+.+ |.+....          ......++..+++.+|.+..|++.....||  
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~----------~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~  423 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA----------LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRA  423 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc----------ceeeehhhhhHHHHhhHHHHHHHHHHHHhhcc
Confidence            566666666665544444444455666666 6522210          011145666778888888888877322222  


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 042372          231 ------IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF  304 (402)
Q Consensus       231 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  304 (402)
                            ++.+....++.++.+++....                    +.  ..+.+-.++.+++.....++....++|+|
T Consensus       424 ~~r~prt~~l~~~~~~~~~~lll~~~~--------------------p~--~~L~~~~~lvg~~~G~~~~~~~~i~selF  481 (591)
T PTZ00207        424 EDRVPITIALFIPSVCIITMLTLFLTL--------------------PK--AALPLPYFIAAFANGFMAATIALVTRTIF  481 (591)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHC--------------------Cc--cHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence                  222222222444444443321                    10  11222222222223333446667779999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHH-HHhHHHHhhhcCC-----------CchhhhHHHHHHHHHHHHHHhhc-ccCCC
Q 042372          305 PARLRSTCHGISAAAGKAGAIVG-AFGVQYYTQKGDK-----------QIKQSIIALAVVNFLGFLCSFMV-PETNG  368 (402)
Q Consensus       305 p~~~r~~~~~~~~~~~~~g~~i~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l-~et~~  368 (402)
                      . ++-|+-+.+.....-+|..+- -.+.|.++|....           =++.+|++++++++++.+....+ -+|++
T Consensus       482 g-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~  557 (591)
T PTZ00207        482 A-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR  557 (591)
T ss_pred             c-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence            9 777887777777777776654 4666777654321           14588999999999988887765 45543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.17  E-value=7.8e-10  Score=102.51  Aligned_cols=146  Identities=19%  Similarity=0.149  Sum_probs=97.0

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ......+...++.++.|+++||+|||+.++.+.++..++.++...........              ........+....
T Consensus        40 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~r~l  105 (394)
T TIGR00883        40 TFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIG--------------IWAPILLLLARLI  105 (394)
T ss_pred             HHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhH--------------HHHHHHHHHHHHH
Confidence            34445556667888999999999999999999888887776666542110000              0001122223333


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh--------hcCCCchhhhHHHHHHHHHH
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ--------KGDKQIKQSIIALAVVNFLG  356 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  356 (402)
                      .+.+.....+....++.|.+|++.|+...++.+....+|..+++.+...+..        ..  +|+..|++.+++.+++
T Consensus       106 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~  183 (394)
T TIGR00883       106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW--GWRIPFLVSAVLVLIG  183 (394)
T ss_pred             HHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc--chHHHHHHHHHHHHHH
Confidence            3333344455666788999999999999999999999999998877665532        22  7888888777666655


Q ss_pred             HHHHhhcccC
Q 042372          357 FLCSFMVPET  366 (402)
Q Consensus       357 ~~~~~~l~et  366 (402)
                      .++...+||+
T Consensus       184 ~~~~~~~~~~  193 (394)
T TIGR00883       184 LYLRRNLEET  193 (394)
T ss_pred             HHHHHhcCCC
Confidence            5444445554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PTZ00207 hypothetical protein; Provisional

Probab=99.16  E-value=9.3e-10  Score=104.93  Aligned_cols=163  Identities=10%  Similarity=0.088  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHH
Q 042372          166 DIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMA  245 (402)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~  245 (402)
                      ....|.+..+.+.+.+++|++..+.+.            ...+..... .+.+..|++.||+|+|++++++.++.+++.+
T Consensus        40 ~g~~y~fsv~s~~L~~~lgls~~~l~~------------i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~l  106 (591)
T PTZ00207         40 TSFMYAFNLISGAMQARYNLTQRDLST------------ITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTL  106 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCHHHHHH------------HHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            345677788889888889998876443            122211222 2344679999999999999999999998888


Q ss_pred             HHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHH
Q 042372          246 ILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAI  325 (402)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~  325 (402)
                      +.++...... .              .+. +.+.++..+.+.+.....+.....+.+.|| +.||.+.|+......+|++
T Consensus       107 l~ala~~~~i-~--------------~s~-~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsa  169 (591)
T PTZ00207        107 LFALTFQEVI-E--------------GSV-VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSA  169 (591)
T ss_pred             HHHHHhcccc-c--------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHH
Confidence            7776422100 0              122 222222223333333333344455678887 6799999999999999998


Q ss_pred             HHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372          326 VGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       326 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (402)
                      +.+.+...+...   +|+..|++.+++.++..++.+
T Consensus       170 I~~~l~~~l~~~---~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        170 ILGSIQLAFFSD---NTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Confidence            644444433332   677777777777776555554

>TIGR00901 2A0125 AmpG-related permease

Probab=99.15  E-value=5.9e-10  Score=102.06  Aligned_cols=160  Identities=13%  Similarity=0.030  Sum_probs=105.4

Q ss_pred             HHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-----chhHHH-HHHHHHHHHHHHH
Q 042372          173 NLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI-----GRFIIQ-LGGFLLMSICMAI  246 (402)
Q Consensus       173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~  246 (402)
                      ....|.+.++.|++..+.+.            .... .+...+ .++.|.++||+     |||+.+ +.+.++.+++...
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~------------~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~   73 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGF------------FSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI   73 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHH------------HHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence            34567888889999887554            2222 122222 56889999998     888875 4555555554444


Q ss_pred             HHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHH
Q 042372          247 LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIV  326 (402)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i  326 (402)
                      +.+..    +.              ... ..+....+..........+...+++.|.+|++.|+.+.++......+|.++
T Consensus        74 l~~~~----~~--------------~~l-~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~  134 (356)
T TIGR00901        74 LSFLV----PS--------------TDL-PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLL  134 (356)
T ss_pred             HHcCC----cc--------------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHH
Confidence            43321    11              111 222222222233333344566678899999999999999999999999999


Q ss_pred             HHHhHHHHhhhcCCC--------chhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372          327 GAFGVQYYTQKGDKQ--------IKQSIIALAVVNFLGFLCSFMV-PETN  367 (402)
Q Consensus       327 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l-~et~  367 (402)
                      ++.+.+.+....  +        |+..|++.+++.++..+..++. ||.+
T Consensus       135 ~~~l~~~l~~~~--g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       135 SGSLALVLASPE--FANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHHHhhhc--ccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999998887766  5        9999999888877766665544 6643

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=1.2e-10  Score=102.23  Aligned_cols=138  Identities=19%  Similarity=0.174  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHH
Q 042372          202 SKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILY  281 (402)
Q Consensus       202 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (402)
                      .++++....+.+++.+++.|.+.||+|+|..+++|+.++....+++++.                      +.+.+.++.
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg----------------------~sy~~l~vA  165 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG----------------------NSYPMLFVA  165 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc----------------------chhHHHHHH
Confidence            3448888899999999999999999999999999999999999988883                      444566666


Q ss_pred             HHHHHHhhcCCcccceeeecccCchhh-hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHH
Q 042372          282 GLTLFFANFGPNSTTFIVPAELFPARL-RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCS  360 (402)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (402)
                      ..+.+.+.........++.++.||.+. |+.++|+.-.+..+|-.+||.+.+.+++..  |+..+|++.++++++...+-
T Consensus       166 R~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~--Gk~aPFlVL~~v~Lld~~L~  243 (464)
T KOG3764|consen  166 RSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA--GKSAPFLVLAIVLLLDGALQ  243 (464)
T ss_pred             HHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc--CCcCcHHHHHHHHHHHHHHH
Confidence            666666666666677788899999765 799999999999999999999999999998  89999999999999988888


Q ss_pred             hhc
Q 042372          361 FMV  363 (402)
Q Consensus       361 ~~l  363 (402)
                      +++
T Consensus       244 l~v  246 (464)
T KOG3764|consen  244 LLV  246 (464)
T ss_pred             Hhe
Confidence            776

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.14  E-value=2.1e-09  Score=100.40  Aligned_cols=194  Identities=13%  Similarity=0.025  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc----ccchh
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID----RIGRF  230 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d----r~grr  230 (402)
                      ++.+....++..+.+.....+.+.|++++|.+....+.            ......+..++..++.|.++|    |+|||
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~------------i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR   73 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASI------------IWLCGPLSGLLVQPLVGYLSDRCTSRFGRR   73 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHhHeeehhcCCCCCCCCh
Confidence            44555555555666666677777788889998875444            677777888888899999999    59999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhH--HHHHHHHHHHHHhhcCCcccceeeecccCchh
Q 042372          231 IIQLGG-FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHA--WFMILYGLTLFFANFGPNSTTFIVPAELFPAR  307 (402)
Q Consensus       231 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  307 (402)
                      +.++.+ .....+++.++.........-..+.+       ......  ...++.....-+......+...++++|++|++
T Consensus        74 rp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~-------~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~  146 (477)
T TIGR01301        74 RPFIAAGAALVAFAVILIGFAADIGHLFGDNLD-------KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGD  146 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchhhhhcccccc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCch
Confidence            988775 44444444444332111000000000       001111  11111111111222223334567889999987


Q ss_pred             hh--hhhHHHHHHHHHHHHHHHHHhHHHHh--hhc-----------CCCchhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372          308 LR--STCHGISAAAGKAGAIVGAFGVQYYT--QKG-----------DKQIKQSIIALAVVNFLGFLCSFMV-PETN  367 (402)
Q Consensus       308 ~r--~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l-~et~  367 (402)
                      .|  +.+.++.+....+|+++++.+.+...  +..           ..+.+..|++.+++.+++.++..+. +|..
T Consensus       147 ~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       147 ARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            65  57889999999999999998887641  111           0145678888888777777776644 7754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.14  E-value=1.1e-08  Score=91.21  Aligned_cols=273  Identities=15%  Similarity=0.061  Sum_probs=149.1

Q ss_pred             hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH--H
Q 042372            6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP--A   83 (402)
Q Consensus         6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~--~   83 (402)
                      .++++|.+|+++|+++.++..+..-+|.+++.++.+.+.+                      +...-|..-.+..+.  .
T Consensus       111 lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~----------------------~~s~~rL~~v~~~~a~i~  168 (403)
T PF03209_consen  111 LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD----------------------PFSPERLIQVIQGVALIA  168 (403)
T ss_pred             HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc----------------------ccCHHHHHHHHHHHHHHH
Confidence            4788999999999999999999999999999999888762                      111233333332222  2


Q ss_pred             H-HHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHH
Q 042372           84 A-LTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTW  162 (402)
Q Consensus        84 ~-~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (402)
                      + +.++..+. .|.++.    +...                       ..++++.+..+.+++-.-.++.+.+....+. 
T Consensus       169 ~~l~~ia~wg-~E~r~~----~~~~-----------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l-  219 (403)
T PF03209_consen  169 LLLNLIALWG-QEPRRS----RRAA-----------------------AAERPRPPFREAWRQVWASPQARRFFVFLFL-  219 (403)
T ss_pred             HHHHHHHHHh-cccCCc----cccc-----------------------CCCCCCccHHHHHHHHHhCCChhHHHHHHHH-
Confidence            2 22222222 232110    0000                       0000111222222221111111222222211 


Q ss_pred             HHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc-ccchhHHHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID-RIGRFIIQLGGFLLM  240 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d-r~grr~~~~~~~~~~  240 (402)
                        ....++.-...+-.|-.+ +|++..+...            ++.....+.++|....|++.. |.++++...+++.+.
T Consensus       220 --~t~a~~~QD~iLEPygg~Vfgmsv~eTT~------------Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~  285 (403)
T PF03209_consen  220 --GTLAFFMQDVILEPYGGEVFGMSVGETTR------------LTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLG  285 (403)
T ss_pred             --HHHHHHhhHHHcCCchhHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence              222333333334344433 7888876554            666677777777777777666 677888888888877


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .++..++........ .              ......+.++++..+.+..    ...+...++.+++..|..+|.....+
T Consensus       286 ~~~f~lii~a~~~~~-~--------------~~~~~~~~l~G~g~G~f~v----gals~mM~lt~~~~aG~~mG~WGaaQ  346 (403)
T PF03209_consen  286 ALAFALIILAGPLGS-P--------------WLFRPGVFLLGLGNGLFTV----GALSLMMDLTSAGRAGLFMGAWGAAQ  346 (403)
T ss_pred             HHHHHHHHHHHhccc-c--------------hHHHHHHHHHHHhhhHHHH----HHHHHHHhCCCCcchhHHHHHHHHHH
Confidence            777666555432111 1              1111112222222222222    22334567787888899999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcC--------CCchhhhHHHHHHHHHHHHHHhh
Q 042372          321 KAGAIVGAFGVQYYTQKGD--------KQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       321 ~~g~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      .+...++.++.+.+.|...        .+|..+|.+-++..+++..+...
T Consensus       347 A~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~  396 (403)
T PF03209_consen  347 AIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR  396 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888888887765321        04556666666665555555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.13  E-value=1.7e-09  Score=98.79  Aligned_cols=72  Identities=10%  Similarity=0.083  Sum_probs=57.1

Q ss_pred             chhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHH---hh
Q 042372            4 LSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMF---GA   80 (402)
Q Consensus         4 ~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~---~~   80 (402)
                      +...++..|+|+++|+++.++..++..+|.+++++++.++                        ..+|||..+.+   ..
T Consensus       134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll------------------------~s~gWr~y~~Ln~Isl  189 (511)
T TIGR00806       134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL------------------------VTLGWISYSTLNIISL  189 (511)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhcCchhHHHHHHHHH
Confidence            5678999999999999999999999999999999999984                        34578876655   33


Q ss_pred             HHHHHHHHHHhhcCCCchh
Q 042372           81 VPAALTYYWRMKMPETARY   99 (402)
Q Consensus        81 i~~~~~~~~~~~lpesp~~   99 (402)
                      ....+.+++.+++|..++-
T Consensus       190 ~s~~~a~~~a~~LP~~~~s  208 (511)
T TIGR00806       190 VFMTFSVFLALFLKRPKRS  208 (511)
T ss_pred             HHHHHHHHHHHhCCCCchh
Confidence            3444567777888855443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.13  E-value=2.1e-09  Score=113.42  Aligned_cols=142  Identities=11%  Similarity=-0.002  Sum_probs=96.9

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ..+...+..++.++++|.++||+|||+++.....+..+..........                   ....+.+++..++
T Consensus        57 ~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-------------------~~s~~~l~~~~~l  117 (1140)
T PRK06814         57 AGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-------------------LNSVPLLFAALFL  117 (1140)
T ss_pred             HHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-------------------HhhHHHHHHHHHH
Confidence            555667777788889999999999999764422222222111111110                   1112334444444


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                      .+.+.....+...+++.+++|++.|+.++|+.++...+|.++||.+.+++....  +|+..|+..+++.+++.++.+++|
T Consensus       118 ~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  195 (1140)
T PRK06814        118 MGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG--NFVILVALLMGIAVLGWLASLFIP  195 (1140)
T ss_pred             HHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHhhCC
Confidence            455455566788889999999999999999999999999999999999998876  888888555555555555555666


Q ss_pred             cCC
Q 042372          365 ETN  367 (402)
Q Consensus       365 et~  367 (402)
                      +++
T Consensus       196 ~~~  198 (1140)
T PRK06814        196 KTG  198 (1140)
T ss_pred             CCC
Confidence            654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.10  E-value=3.6e-09  Score=98.20  Aligned_cols=174  Identities=13%  Similarity=0.025  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHH-HHHhhhcccchhhhhhccccchhHHHH
Q 042372          157 GTTSTWFLLDIAFYTINLTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFL-VALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      ......+............+|.++ +++|.+..+.+.            ... ...++.+.+.+.+++ .||+|||+.++
T Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~   85 (393)
T PRK15011         19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGF------------FFTGSAVIGILVSQFLAGR-SDKRGDRKSLI   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHH-HhcccchhHHH
Confidence            333334444445445555566655 458888876544            332 233344455555666 99999998754


Q ss_pred             -HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh--h
Q 042372          235 -GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS--T  311 (402)
Q Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~  311 (402)
                       .+.+..++...+..+.                     .+.+.+.+ .............+....+..+..+++.|.  .
T Consensus        86 ~~~~~~~~~~~~~~~~~---------------------~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (393)
T PRK15011         86 VFCCLLGVLACTLFAWN---------------------RNYFVLLF-VGVFLSSFGSTANPQMFALAREHADKTGREAVM  143 (393)
T ss_pred             HHHHHHHHHHHHHHHHh---------------------hHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHhhhccchHHH
Confidence             4444333444333332                     22222222 222222222333445555556666655443  3


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      ..++.+....+|.+++|.+.+.+.+..  +|+..|++.++..++..+..+ ++||.+
T Consensus       144 ~~~~~~~~~~lg~~~g~~i~~~l~~~~--gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        144 FSSFLRAQVSLAWVIGPPLAYALAMGF--SFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            346778888899999999999998877  999999988877776665555 457654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.09  E-value=1.7e-09  Score=100.51  Aligned_cols=178  Identities=11%  Similarity=-0.089  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      ++......++..........++|.++.+ +|.++.+.+.            ......+...++.++.|+++||+|||+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~l~~~i~~~~~G~l~Dr~grr~~~   71 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGI------------VFSCISLFSILFQPLFGLISDKLGLKKHL   71 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            4445445555555555666677777765 7888886555            77888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      +.+....+++..............              ........+..+..+.......+....+..+..  +.++...
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~  135 (396)
T TIGR00882        72 LWIISGLLVLFAPFFIYVFGPLLQ--------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEY  135 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHH--------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhccccc
Confidence            877655544333221110000000              001111111122222222222333333333332  2234456


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +.....+.+|..++|.+.+.+.+.   +|+.+|++.+++.++..++.+..
T Consensus       136 g~~~~~~~~g~~~g~~~~g~l~~~---~~~~~f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       136 GKARMFGCVGWALCASIAGILFSI---DPQIVFWLGSGFALILMLLLMFA  182 (396)
T ss_pred             chhhhhcccHHHHHHHHHhhhhcc---CchHHHHHHHHHHHHHHHHHHHh
Confidence            777788889999999998887654   88999988887777766555544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.08  E-value=4.2e-09  Score=111.38  Aligned_cols=116  Identities=12%  Similarity=0.009  Sum_probs=85.1

Q ss_pred             HHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH
Q 042372          203 KAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG  282 (402)
Q Consensus       203 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (402)
                      ++..++..++.+++.+++|+++||+|||++++++.++.++..++..+...                   ......+++..
T Consensus        50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~r  110 (1146)
T PRK08633         50 AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY-------------------LGWFWLAFAVT  110 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-------------------HccHHHHHHHH
Confidence            33566677778888889999999999999998887665555444433221                   11123333333


Q ss_pred             HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372          283 LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK  337 (402)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  337 (402)
                      ++.+.+.....+...+++.|.+|++.|+.++|+......+|.++++.+.+++...
T Consensus       111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444555567778899999999999999999999999999999999988765

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.07  E-value=5.9e-08  Score=91.14  Aligned_cols=64  Identities=14%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             CchhHHhhhhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            3 PLSAVIMSEYANKR--TRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         3 ~~~~~~i~e~~~~~--~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      |...++++|.+|++  +|....++...+.++|..++|.+.+++.                       +..|||+.|.+++
T Consensus       119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~-----------------------~~~Gw~~~F~iaa  175 (493)
T PRK15462        119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ-----------------------EEYSWAMGFGLAA  175 (493)
T ss_pred             ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH-----------------------hhhChHHHHHHHH
Confidence            45678999999876  7999999999999999999999999987                       6678999999876


Q ss_pred             HHHHHHHHH
Q 042372           81 VPAALTYYW   89 (402)
Q Consensus        81 i~~~~~~~~   89 (402)
                      +..++.++.
T Consensus       176 igm~l~li~  184 (493)
T PRK15462        176 VGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHH
Confidence            544444333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.06  E-value=3.6e-09  Score=98.76  Aligned_cols=137  Identities=13%  Similarity=0.105  Sum_probs=114.7

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      +......+.+++.+.+|++.||+|-|+++..+.++.+++.++..+...                   ... ..+++..++
T Consensus        78 i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-------------------~~~-~~~~~~R~l  137 (466)
T KOG2532|consen   78 IFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-------------------IGF-YLLLVLRFL  137 (466)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-------------------hcc-hhhHHHHHH
Confidence            777788888999999999999999999999999999988888777643                   111 244555666


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh-cCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK-GDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .+.+.....|....+.+...|++.|++..++......+|.+++-.+.|.+.+. .  ||+.+|++.+++.++..++.+++
T Consensus       138 qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~--GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  138 QGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSL--GWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCC--CCchHHHHHHHHHHHHHHHHHHH
Confidence            66666666778888899999999999999999999999999999999999887 5  99999999999988877776654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.06  E-value=1.1e-09  Score=103.77  Aligned_cols=151  Identities=15%  Similarity=0.068  Sum_probs=97.8

Q ss_pred             HHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhc
Q 042372          173 NLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYD  252 (402)
Q Consensus       173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~  252 (402)
                      ...++.+..++|-++...-             +.....++..++.++.|.++|.+|||..++.+.++..++.++.+... 
T Consensus        64 a~~l~~I~~diG~~~~~~w-------------~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-  129 (599)
T PF06609_consen   64 ASILPYINADIGGSDNWSW-------------FSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-  129 (599)
T ss_pred             HHHHHHHHHhcCCCccchH-------------HHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-
Confidence            3344666677776544211             34445566677777899999999999999999998888888776541 


Q ss_pred             cccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHH
Q 042372          253 SLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQ  332 (402)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~  332 (402)
                                          +...++....+.+.  +.+........++|+.|.+.|..+.++.....-....+++.+..
T Consensus       130 --------------------~~~~~iag~~l~Gv--gaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~  187 (599)
T PF06609_consen  130 --------------------NMNTFIAGMVLYGV--GAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ  187 (599)
T ss_pred             --------------------cHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence                                22222222222221  12323334445799999999988877666554444445666655


Q ss_pred             HHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372          333 YYTQKGDKQIKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (402)
                      .+....  +||+.|++.++...++++..+
T Consensus       188 ~~~~~~--~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  188 LFAAHS--GWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HhccCC--CcchHHHHHHHHHHHHHHHHH
Confidence            554433  899999999888777766554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.05  E-value=2.6e-11  Score=115.26  Aligned_cols=314  Identities=11%  Similarity=0.080  Sum_probs=0.0

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCc--ccccccccccCCCCC-c-chhHHHH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAP--AFNRNHVLSAQPQGD-Y-LWRIVLM   77 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-~Wr~~f~   77 (402)
                      |+.+.+|+-|..++++-+.++|++.+...+|.++|.++++.+.+.+.+-...+  ..+.++     .... . .|..-|+
T Consensus       159 ~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p-----~dp~WvGAWWLGfl  233 (539)
T PF03137_consen  159 YTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP-----SDPRWVGAWWLGFL  233 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC-----CCccHHHHHHHHHH
Confidence            57788999999999999999999999999999999999998887543211110  000011     0111 1 3666666


Q ss_pred             HhhHHHHHHHHHHhhcCCC-chhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHH
Q 042372           78 FGAVPAALTYYWRMKMPET-ARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLL  156 (402)
Q Consensus        78 ~~~i~~~~~~~~~~~lpes-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (402)
                      +.++..++..+..++.|+. |..    ++.+++......+. ..+.+++..+.++.+......++.++....--+.+.++
T Consensus       234 i~g~~~~l~aipl~~FPk~lp~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~  308 (539)
T PF03137_consen  234 ICGILLFLSAIPLFFFPKKLPGT----SERQEEKESSERKE-EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFM  308 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCccCCCc----ccccchhhhhhcch-hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHH
Confidence            6666666655555555544 221    00000000000000 00000000000000000111122222111001113556


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc--hhHHH
Q 042372          157 GTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG--RFIIQ  233 (402)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g--rr~~~  233 (402)
                      ...+..........+...|.|.|++. ++.++..+.+           +...+...+.++|.+++|++..|+.  .|..+
T Consensus       309 ~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~-----------l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~  377 (539)
T PF03137_consen  309 CLILAGVFESFIVSGFATFLPKYLESQFGLSASQASL-----------LTGIVSIPGAALGILLGGYIVKKFKLSARGAA  377 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-----------HHhhhhcchhheehheEEEEEEEecCcHHHHH
Confidence            66666666667777888999999986 7887776443           1333444566788889999999984  33333


Q ss_pred             HHHHHHHHHHHHH---HHHhh---cccc--CCCC------CCC----CCC-----------CCccCCCh----hHHHHHH
Q 042372          234 LGGFLLMSICMAI---LGARY---DSLR--GKKC------DAK----KDP-----------LHEYCDGN----HAWFMIL  280 (402)
Q Consensus       234 ~~~~~~~~~~~~~---~~~~~---~~~~--~~~~------~~~----~~~-----------~~~~~~~~----~~~~~~~  280 (402)
                      ....+...++.+.   ..+..   ....  +...      ...    .++           ..+.++..    .+.++++
T Consensus       378 ~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~  457 (539)
T PF03137_consen  378 KFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLIL  457 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHH
Confidence            3333322222222   11110   0000  0000      000    000           12223222    2233333


Q ss_pred             HHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH-HHHHHHHhHHHHhhh
Q 042372          281 YGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA-GAIVGAFGVQYYTQK  337 (402)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~  337 (402)
                      ..+..+.......| ....+-..+|++.|+.+.|+...+.++ |.+-+|.++|.+.|.
T Consensus       458 ~~~~~~~~~~~~~p-~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  458 LFILSFFTFMSQVP-STLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ----------------------------------------------------------
T ss_pred             HHHHHHHHHhcccc-hheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            33333333333333 334456778999999999999988766 667889999998885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.05  E-value=3.6e-09  Score=100.47  Aligned_cols=140  Identities=14%  Similarity=0.053  Sum_probs=101.2

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ......+-.++.++++|.++||+.||++++.+-++..+..+++.+.....                 ....+.++++.+.
T Consensus        50 v~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~-----------------~~~~~~Ll~~~fl  112 (524)
T PF05977_consen   50 VQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFG-----------------LLSPWLLLILTFL  112 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhC-----------------cCCHHHHHHHHHH
Confidence            55555566666777899999999999999998887776655555443211                 1122333444444


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .+.+.....|...+++.|++|++....++++.+...++..++||.+.|.+....  |...+|.+-++..++..+.....
T Consensus       113 ~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~--G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  113 LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF--GAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHc
Confidence            444445556777888899999999999999999999999999999999988876  66777877776666655544444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00896 CynX cyanate transporter

Probab=99.05  E-value=2e-09  Score=98.57  Aligned_cols=148  Identities=16%  Similarity=0.091  Sum_probs=100.4

Q ss_pred             HHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhh
Q 042372          172 INLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARY  251 (402)
Q Consensus       172 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  251 (402)
                      ....+|.+.+++|.+..+.+.            ......++..++.++.|+++||+|||+.+.++.++..++.+.. .. 
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-   84 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGL------------LTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-   84 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-
Confidence            445678888889999887655            7778888888999999999999999999998876655554433 11 


Q ss_pred             ccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH
Q 042372          252 DSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV  331 (402)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~  331 (402)
                                          .+.+.+ .+..+..+.+.....+....++.|.+| +.|+.+.++.+....+|..+++.+.
T Consensus        85 --------------------~~~~~l-~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~  142 (355)
T TIGR00896        85 --------------------PGTALL-FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAAT  142 (355)
T ss_pred             --------------------ccHHHH-HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                122222 222222222222222233345577776 5799999999999999999999888


Q ss_pred             HHHhhhcCCCchhhhHHHHHHHHH
Q 042372          332 QYYTQKGDKQIKQSIIALAVVNFL  355 (402)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~  355 (402)
                      +.+.+..+.+|+..|.+.+++.++
T Consensus       143 ~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       143 VPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHH
Confidence            887765422488887766655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.05  E-value=7.6e-09  Score=95.67  Aligned_cols=160  Identities=9%  Similarity=-0.042  Sum_probs=100.8

Q ss_pred             HHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH----HHHHHHHHHHH
Q 042372          167 IAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI----IQLGGFLLMSI  242 (402)
Q Consensus       167 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~----~~~~~~~~~~~  242 (402)
                      ........++|.++++.|.+..+.+.            ......+...++.++.|.++||+|||.    .+.+..   .+
T Consensus        18 ~~~g~~~p~l~~~l~~~g~s~~~iG~------------~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~---~~   82 (382)
T PRK11128         18 FAYGVFLPFWSVWLKGQGYTPETIGL------------LLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLT---LL   82 (382)
T ss_pred             HHHHHHhhhHHHHHHhcCCCHHHHHH------------HHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHH---HH
Confidence            34455566778889999999887665            677778888888899999999999842    222221   11


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKA  322 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  322 (402)
                      ....+...    .                ++. +.+.+.....+.+.....+...++..+.  .+.|+.+.+.....+.+
T Consensus        83 ~~~~~~~~----~----------------~~~-~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~l  139 (382)
T PRK11128         83 FAVAFWFG----A----------------HSF-WLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSI  139 (382)
T ss_pred             HHHHHHHh----c----------------ccH-HHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHH
Confidence            11111110    0                122 2222223322333333444444444444  35578888889999999


Q ss_pred             HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccC
Q 042372          323 GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPET  366 (402)
Q Consensus       323 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et  366 (402)
                      |..++|.+.+.+.+..  +|+..|++.++..++..+...+.||.
T Consensus       140 g~~igp~lgg~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        140 AFVIGSALTGKLVSWF--GEQAILWILTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             HHHHHHHHHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHccCCC
Confidence            9999999999999887  89999887776555544433334544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.02  E-value=1.4e-08  Score=93.95  Aligned_cols=156  Identities=18%  Similarity=0.062  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      ..+.....+.....++|.++++.|++..+.+.            ......+...++.++.+.++||+||+..........
T Consensus        12 ~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~------------~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~   79 (382)
T TIGR00902        12 GFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGL------------LIGAALIARFAGGLFFAPLIKDANHIIIALRLLALA   79 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34444444445566788999999999887665            666777778888889999999999854332221111


Q ss_pred             H-HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          241 S-ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       241 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      . +..+.+...    .                ++.+...+...+ ...+.....+...++..+  +.+.|+...|.....
T Consensus        80 ~~l~~~~~~~~----~----------------~~~~~l~~~~~l-~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~  136 (382)
T TIGR00902        80 SAIFAAAFSAG----A----------------HNAWLLFIAIGL-FALFFSAGMPIGDALANT--WQKQFGLDYGKVRLI  136 (382)
T ss_pred             HHHHHHHHHHh----h----------------hhHHHHHHHHHH-HHHHHccchhHHHHHHHH--HHHHcCCCccHHHHH
Confidence            1 111111111    0                222223233222 222233344555555444  256789999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN  353 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (402)
                      ..+|.+++|.+.+.+.+..  +|+..|.+.....
T Consensus       137 ~slG~~~g~~l~g~l~~~~--g~~~~f~~~~~~~  168 (382)
T TIGR00902       137 GSAAFIIGSALFGGLIGMF--DEQNILAILTAGL  168 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHc--ChhHHHHHHHHHH
Confidence            9999999999999999987  8998888766543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.02  E-value=1.6e-11  Score=116.19  Aligned_cols=146  Identities=19%  Similarity=0.196  Sum_probs=106.9

Q ss_pred             HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372          204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL  283 (402)
Q Consensus       204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (402)
                      .......++.++|+++.|+++||+|||+.++.+.++..++.++..+....                   .....+.+..+
T Consensus        50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------~~~~~~~~~R~  110 (451)
T PF00083_consen   50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-------------------NNFWMLLIGRF  110 (451)
T ss_pred             HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc-------------------ccccccccccc
Confidence            36777889999999999999999999999999988888777776664210                   01233333444


Q ss_pred             HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC-CCchhhhHHHHHHHHHHHHHHhh
Q 042372          284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD-KQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      +.+++..+..+....++.|..|++.|+...++.+....+|..++..+........+ ..|+..+.+.++..++..+..++
T Consensus       111 ~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~  190 (451)
T PF00083_consen  111 LIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFF  190 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44554555666788899999999999999999988888887777765543322221 15888888888888777776667


Q ss_pred             cccCCC
Q 042372          363 VPETNG  368 (402)
Q Consensus       363 l~et~~  368 (402)
                      +||+..
T Consensus       191 ~pESP~  196 (451)
T PF00083_consen  191 LPESPR  196 (451)
T ss_pred             cccccc
Confidence            799743

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.98  E-value=3.8e-08  Score=91.53  Aligned_cols=259  Identities=12%  Similarity=0.055  Sum_probs=151.9

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      ..+.+|++|.+..++|....++.......+..++|.+++.+.                       ...|.-.+|.+..+.
T Consensus       131 s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~-----------------------~~~~~a~~f~ia~~~  187 (463)
T KOG2816|consen  131 SVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV-----------------------KFLGIALVFLIAAAS  187 (463)
T ss_pred             hhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------------------HhcCchHHHHHHHHH
Confidence            456789999999999999999999999999999999999987                       445677788887777


Q ss_pred             HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++ .+..++++||+-.     +++++++  ...   ...      ..+..........+...+   .++.+..+.+.+.
T Consensus       188 ~~~~~~y~~~~l~Esl~-----~~~~~~~--~~~---~~~------~~~~~~~~~~~~~~~~~~---~~~~r~~l~l~l~  248 (463)
T KOG2816|consen  188 GILSLLYMLLFLPESLQ-----EKERSDA--TLR---ELT------PGSLDSSHVADAFQSLTK---VGPDRLLLLLLLV  248 (463)
T ss_pred             HHHHHHHHhhccccccC-----ccccccc--ccc---ccC------CCcccchhhhhhhhhhcc---cCCCccchHHHHH
Confidence            666 4556778999832     1111110  000   000      000000001111111111   1111233333333


Q ss_pred             HHHHHHHHHHHHH-hHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhh-hhhccccchhHHHHHHHH
Q 042372          162 WFLLDIAFYTINL-TQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFT-VFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       162 ~~~~~~~~~~~~~-~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-g~l~dr~grr~~~~~~~~  238 (402)
                      .+........-.. ..+.++. .++++..+.+.            ......+...++.++. +.+...+|-|+....|..
T Consensus       249 ~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~------------~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~  316 (463)
T KOG2816|consen  249 AFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSD------------LLSLVSILGIISQLLLLPLLSSILGEKRLISLGLL  316 (463)
T ss_pred             HHHHHHHHhcCceeEEEEEEeeecCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHH
Confidence            3222211111111 2233443 37888887554            3333333333444444 478888898888888877


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      ...+.....++..                     ..+.... ..... .......+...+..+-...++.+|++.++...
T Consensus       317 ~~~~~~~~~af~~---------------------~~w~~~~-~~v~~-~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~  373 (463)
T KOG2816|consen  317 SEFLQLLLFAFAT---------------------ETWMMFA-AGVVV-ALAGIVFPAIRAFASILVSPEEQGKVFGIISG  373 (463)
T ss_pred             HHHHHHHHHHHhc---------------------cchhhhH-HHHHH-HhhcchhHHHHhHHHhhcccccccchhhHHHH
Confidence            7777777766642                     2222221 11111 12334445666677888889999999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhc
Q 042372          319 AGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       319 ~~~~g~~i~~~~~~~~~~~~  338 (402)
                      +..+.+.++|.+.+.+...+
T Consensus       374 i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  374 IEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHHHhhhhhHHHHHHHHHHH
Confidence            99999999998888776543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.94  E-value=7.1e-09  Score=94.37  Aligned_cols=178  Identities=13%  Similarity=0.007  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cC----CchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TG----IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI  227 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~  227 (402)
                      +.+..++..-+.--+.||++...+..|+.. .+    ++++++..            ....+....-+..+++|+++||+
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~------------l~~~y~slVY~t~i~GG~laDr~   88 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATG------------LFSAYGSLVYLTPIIGGWLADRV   88 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHH------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            456667777777778889887777666653 44    77665332            22222222333455789999995


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch
Q 042372          228 -GRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA  306 (402)
Q Consensus       228 -grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  306 (402)
                       |+|+.++.|.+++.++.++++....                   .....+.+. ......+....=+....+..|++|+
T Consensus        89 LG~~~tI~lGail~~iGh~~L~~~~~-------------------~~~~gl~i~-L~~I~iG~Gl~K~NiS~llg~ly~~  148 (498)
T COG3104          89 LGTRRTIVLGAILMAIGHLVLAISSV-------------------SGPGGLYIG-LALIIVGTGLFKPNISSLLGELYPK  148 (498)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcccc-------------------ccccHHHHH-HHHHHhccccccccHHHHHHHhcCC
Confidence             9999999999999999988877520                   011122222 2222233344445666778899875


Q ss_pred             --hhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          307 --RLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       307 --~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                        .+|..+.++.++..++|++++|.+.+++.+..  +|...|...++-..++++..+..+
T Consensus       149 ~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~--g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         149 DDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY--GWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             CCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHHcc
Confidence              33788889999999999999999999999988  899999999888888888777654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.93  E-value=4.5e-08  Score=90.83  Aligned_cols=181  Identities=15%  Similarity=0.097  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhh-hhhccccchhHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFT-VFLIDRIGRFIIQ  233 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-g~l~dr~grr~~~  233 (402)
                      ...+...++.++..+.....+.|.++++.|.+..+.+.        .+  ......+..++..++. ++..||+|||+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl--------~~--~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~   72 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAF--------LP--LVGLPWVVKFLWAPLVDNWWSWRLGRRRSW   72 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH--------HH--HHHHHHHHHHHHHHHHhccccccCCcchhH
Confidence            44566677788888888888999999999999887554        10  1234456666666666 5578999999887


Q ss_pred             HHHHHHH-HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372          234 LGGFLLM-SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC  312 (402)
Q Consensus       234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  312 (402)
                      ++...+. ..+...+....  .. .              ....+.... .....+......+..-.+..|..+.+.++..
T Consensus        73 i~~~~~~~~~~~~~~~~~~--~~-~--------------~~~~~~~~~-~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~  134 (390)
T TIGR02718        73 VLPMQCLVSACLASLALVG--PD-V--------------AGAGWAVGL-LACASLASATQDIATDGMAAEHFNGRTLAKG  134 (390)
T ss_pred             HHHHHHHHHHHHHHHHcCC--cc-h--------------hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHhhhhHH
Confidence            5554322 21222222111  11 1              111122222 2222222333333444456777777777877


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhccc
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPE  365 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  365 (402)
                      .+.......+|..+++...+++.+..  +|+.+|++.+++.++..+..++++|
T Consensus       135 ~~~~~~g~~lG~~~g~~~~~~l~~~~--gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       135 NAVQIAGVMIGFFGGGAGTLVLFGKF--GQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77777777888888888888888877  9999999999888777766665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.93  E-value=4.9e-08  Score=92.06  Aligned_cols=171  Identities=16%  Similarity=0.100  Sum_probs=102.7

Q ss_pred             HHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhH-HHHHHHHHHHH
Q 042372          169 FYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFI-IQLGGFLLMSI  242 (402)
Q Consensus       169 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~-~~~~~~~~~~~  242 (402)
                      ......|++.++. .+|.++...+.            ...+..+...+..++.|.++||    +|||+ .++.+....++
T Consensus        15 ~~~~~~~l~~~~~~~~g~s~~~~g~------------i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i   82 (437)
T TIGR00792        15 FAIVSTYLLFFYTDVLGLSAAFVGT------------LFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSI   82 (437)
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHH------------HHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHH
Confidence            3344444555554 58988886555            7888888999999999999998    67755 55566555555


Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhhhHHHHHHHHH
Q 042372          243 CMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRSTCHGISAAAGK  321 (402)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~  321 (402)
                      +.+++......  ..              ...........+....+.........++..|+. +++.|+...++.+....
T Consensus        83 ~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~  146 (437)
T TIGR00792        83 VLVLLFTTPDF--SA--------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGAT  146 (437)
T ss_pred             HHHHHHhCCCC--Cc--------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHH
Confidence            55544332110  00              111112221112222212222223445667876 56889999999888888


Q ss_pred             HHHHHHHHhHHHHhhhcC-----CCchhhhHHHHHHHHHHHHHHh-hcccCC
Q 042372          322 AGAIVGAFGVQYYTQKGD-----KQIKQSIIALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~l~et~  367 (402)
                      +|..+++.+.+.+....+     .+|+..+.+.+++.++..++.+ ..||++
T Consensus       147 ~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       147 LGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            888877766555543211     1788888888877777666554 346654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.93  E-value=1.3e-08  Score=97.71  Aligned_cols=142  Identities=18%  Similarity=0.159  Sum_probs=106.9

Q ss_pred             HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372          204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL  283 (402)
Q Consensus       204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (402)
                      .......++..+|.++.|+++|++|||+.++.+.+...++.++.+...                      ....+.+..+
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----------------------~~~~l~~GR~  150 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP----------------------SWYQLIVGRI  150 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHH
Confidence            377778889999999999999999999999999999898888887752                      2234444444


Q ss_pred             HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +.+++..+...+...|.+|+.|++.||...+..+....+|..++ ++.+........+|+..+.+..+.+++..+..+++
T Consensus       151 l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~  229 (513)
T KOG0254|consen  151 LTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFL  229 (513)
T ss_pred             HhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence            44444444445667889999999999999999999988777777 44444443211179988888888888877776667


Q ss_pred             ccCCC
Q 042372          364 PETNG  368 (402)
Q Consensus       364 ~et~~  368 (402)
                      ||+.+
T Consensus       230 pesp~  234 (513)
T KOG0254|consen  230 PESPR  234 (513)
T ss_pred             CCChH
Confidence            88754

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.90  E-value=5.7e-09  Score=93.48  Aligned_cols=155  Identities=18%  Similarity=0.138  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHH
Q 042372          201 ISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMIL  280 (402)
Q Consensus       201 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (402)
                      ..+.......++.+.|.++.|++.||+|||+++...++++.++.++.+........               ....+.+..
T Consensus        85 i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~---------------~~~m~~L~~  149 (538)
T KOG0252|consen   85 VLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSP---------------LGVMMTLCF  149 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCC---------------cchhhHHHH
Confidence            34447888889999999999999999999999999988888888755543221111               233445556


Q ss_pred             HHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHH---hhh-cCC---------CchhhhH
Q 042372          281 YGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYY---TQK-GDK---------QIKQSII  347 (402)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~---~~~-~~~---------~~~~~~~  347 (402)
                      +....+.+..+-+|...++++|....+.||.-.+.....+..|...|..+...+   .+. .+.         -||..+.
T Consensus       150 ~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~g  229 (538)
T KOG0252|consen  150 FRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFG  229 (538)
T ss_pred             HHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHH
Confidence            666777777888899999999999999999988877777666655554433332   221 110         3666666


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCC
Q 042372          348 ALAVVNFLGFLCSFMVPETNGLS  370 (402)
Q Consensus       348 ~~~~~~~~~~~~~~~l~et~~~~  370 (402)
                      +.++..++....-+.+|||+..+
T Consensus       230 lg~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  230 LGAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             HHHHHHHHHHHhhhcCCcchhHH
Confidence            66666555555555669987654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.86  E-value=5.3e-08  Score=82.66  Aligned_cols=168  Identities=17%  Similarity=0.160  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372          165 LDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM  244 (402)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  244 (402)
                      .....|.+..|.|.+-+++|++.++...            +.....++..+| +..|.+.|++|.+.++++|.+...++.
T Consensus        14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~------------l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY   80 (250)
T PF06813_consen   14 CSGTTYTFSAYSPQLKSRLGYSQSQLNT------------LSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGY   80 (250)
T ss_pred             hcCcccchhhhhHHHHHHhCCCHHHHHH------------HHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            3346778889999999999999887554            555556666654 678999999999999999998888887


Q ss_pred             HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHH
Q 042372          245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGA  324 (402)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~  324 (402)
                      ..+.........               ....+...++....+.+.............+.|| +.||++.|+.-....+++
T Consensus        81 ~~~~l~~~~~i~---------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSa  144 (250)
T PF06813_consen   81 GLLWLAVSGRIP---------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSA  144 (250)
T ss_pred             HHHHHHHhCccC---------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHH
Confidence            776665432211               1122233333222222222222333344567888 579999999999999888


Q ss_pred             HHHHHhHHHHhhhcCCCchhhhHHHHHH-HHHHHHHHhhcc
Q 042372          325 IVGAFGVQYYTQKGDKQIKQSIIALAVV-NFLGFLCSFMVP  364 (402)
Q Consensus       325 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~  364 (402)
                      .+-..+...+.+.   +....+.+.+.. .+++++..++++
T Consensus       145 ai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  145 AIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHhhhee
Confidence            8777766666554   222333333333 344444445553

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.86  E-value=1.3e-07  Score=83.82  Aligned_cols=178  Identities=13%  Similarity=0.035  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      .++.+...++..++.........|.+.+.+..+..+++.            .......+..+.++..+++.+|+|+|+-+
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~l------------iqfaff~gYf~~~lpa~~~~kk~gyk~gi   81 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASL------------IQFAFFGGYFIMSLPAGLLIKKLGYKAGI   81 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHH------------HHHHHHHHHHHHhccHHHHHHHhhhHHHH
Confidence            344455555555555556666778887778888776555            66777777778888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhH
Q 042372          234 LGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCH  313 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  313 (402)
                      +.+..+.++++.++.-...                   ...+...+...+..+.+..........+++.+.|++..+.-.
T Consensus        82 ~lgL~l~avg~~lF~pAa~-------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rl  142 (422)
T COG0738          82 VLGLLLYAVGAALFWPAAS-------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRL  142 (422)
T ss_pred             HHHHHHHHHHHHHHhhhhh-------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHH
Confidence            9999999998887753321                   122222222222222222233345556778888888788889


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhc-----------------CCCchhhhHHHHHHHHHHHHHHhh
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKG-----------------DKQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      .+.+.++.+|++++|.+.+.+....                 -..++.++..++...++..+....
T Consensus       143 nl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~  208 (422)
T COG0738         143 NLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL  208 (422)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999988877620                 004667777777666665555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.85  E-value=2.5e-08  Score=94.32  Aligned_cols=173  Identities=10%  Similarity=0.073  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL  234 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~  234 (402)
                      ....++.........+....+.+.+.++++.+..+.++            ...+.........++.+.+.||+|.|.+.+
T Consensus        48 ~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~------------i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i  115 (509)
T KOG2504|consen   48 VFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAW------------IGSLLLGVYLLAGPLVSALCNRFGCRTVMI  115 (509)
T ss_pred             eHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHH------------HHHHHHHHHHHhccHHHHHHhhcCchHHHH
Confidence            33333333333334444455667777777777775443            555555556666778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG  314 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  314 (402)
                      .|.++.++++++..+.                     .+.+.+.+.+.+..+.+.........+.+.. +..+.|+.+.|
T Consensus       116 ~G~~v~~~g~~lssF~---------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~-YF~kkR~lA~G  173 (509)
T KOG2504|consen  116 AGGLVAALGLLLSSFA---------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGT-YFEKKRALATG  173 (509)
T ss_pred             HHHHHHHHHHHHHHHH---------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhh-HhHHHHHHHHh
Confidence            9999999998887775                     4444555555555544333333233334444 45577999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          315 ISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       315 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +......+|.++-|.+.-.+.+..  ||+..+++++.+.+-..+....+
T Consensus       174 ia~~GsG~G~~~~~~l~~~l~~~~--G~r~~~l~~~~~~l~~~~~~~~~  220 (509)
T KOG2504|consen  174 IAVSGTGVGTVVFPPLLKYLLSKY--GWRGALLIFGGISLNVLVAGALL  220 (509)
T ss_pred             hhhccCCcceeeHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999988888888888887  99999999998887777666655

>PRK09669 putative symporter YagG; Provisional

Probab=98.78  E-value=3.5e-07  Score=86.43  Aligned_cols=174  Identities=17%  Similarity=0.182  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhH-HHHHHHH
Q 042372          165 LDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFI-IQLGGFL  238 (402)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~-~~~~~~~  238 (402)
                      .+..+.....|++.|+.+ +|++....+.            ...+..+...+..++.|.++||    +|||+ .++++.+
T Consensus        21 ~~~~~~~~~~~l~~~~t~~~gls~~~~g~------------i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~   88 (444)
T PRK09669         21 CNLVWQTVMLFLAYFYTDVFGLSAAIMGT------------MFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI   88 (444)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH
Confidence            333344445555656555 8998886555            7888888889999999999998    67754 4555655


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhhhHHHHH
Q 042372          239 LMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRSTCHGISA  317 (402)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~  317 (402)
                      ..+++.+++..... ....              ....+..+...+...... .......++.+|+. +++.|.+..+...
T Consensus        89 ~~~i~~~l~f~~p~-~~~~--------------~~~~~~~~~~~l~~~~~t-~~~ip~~al~~~~t~~~~eR~~l~~~r~  152 (444)
T PRK09669         89 PFGVVCLLTFYTPD-FGAT--------------GKIIYACVTYILLSLVYT-AINVPYCAMPGAITNDPRERHSLQSWRF  152 (444)
T ss_pred             HHHHHHHHHHhCCC-CCcc--------------hHHHHHHHHHHHHHHHHH-hhcchHHHhHHHhcCCHHHHHHHHHHHH
Confidence            55555443322110 0000              112222222222222222 23333446678877 4577998888888


Q ss_pred             HHHHHHHHHHHHhHHHHhhhcC-----CCchhhhHHHHHHHHHHHHHHhhc-ccC
Q 042372          318 AAGKAGAIVGAFGVQYYTQKGD-----KQIKQSIIALAVVNFLGFLCSFMV-PET  366 (402)
Q Consensus       318 ~~~~~g~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l-~et  366 (402)
                      ....+|+.+++.+...+....+     .+|+..+.+.+++.++..+..++. +|.
T Consensus       153 ~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        153 ALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            8888888887765544443321     156666666666666655554443 553

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.72  E-value=3.4e-07  Score=80.04  Aligned_cols=139  Identities=17%  Similarity=0.067  Sum_probs=97.5

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      +......+..+++...|.++|++|||+.+...++..++..++-...                     .+..++.+ +-.+
T Consensus       118 lt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s---------------------pnf~~L~~-f~~l  175 (528)
T KOG0253|consen  118 LTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS---------------------PNFASLCV-FRAL  175 (528)
T ss_pred             HHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC---------------------CCeehhhH-HHHH
Confidence            6666778889999999999999999999887766555444433321                     12222222 2222


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                      .++ +.+..|...++-.|..|...|...+-+. ....+|.++...+.-......  ||++.+....+...+.+.+++++|
T Consensus       176 ~~~-g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~--gwr~~l~~~~~pl~~~a~f~~w~~  251 (528)
T KOG0253|consen  176 WGF-GVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF--GWRYLLFTSSTPLMFAARFLVWVY  251 (528)
T ss_pred             Hhc-cCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhHHHHHHHHHhhcc
Confidence            233 3333667777779999999998876665 777778888777776666666  899888888877777888888888


Q ss_pred             cCCCC
Q 042372          365 ETNGL  369 (402)
Q Consensus       365 et~~~  369 (402)
                      |..+-
T Consensus       252 ESpRf  256 (528)
T KOG0253|consen  252 ESPRF  256 (528)
T ss_pred             cCcch
Confidence            87554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.70  E-value=5e-07  Score=84.86  Aligned_cols=142  Identities=15%  Similarity=0.047  Sum_probs=100.0

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ...+..++.+++.+.++.+.||++-.+.+....+..++..++....                     .+. ...+..-++
T Consensus        86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~---------------------~s~-~~~ialr~l  143 (495)
T KOG2533|consen   86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV---------------------HSF-PGLIALRFL  143 (495)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH---------------------hhh-HHHHHHHHH
Confidence            5666677777888889999999995555554433333222222221                     122 333444445


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC----CCchhhhHHHHHHHHHHHHHH
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD----KQIKQSIIALAVVNFLGFLCS  360 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  360 (402)
                      .+.+..+..|....++...+.++.|+..+|+.++...+|+++|+++...+.+..+    .+|++.|++-+++.++..++.
T Consensus       144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~  223 (495)
T KOG2533|consen  144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV  223 (495)
T ss_pred             HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence            5555677778888899999999999999999999999999999988877543111    199999999999988877666


Q ss_pred             h-hcccCCC
Q 042372          361 F-MVPETNG  368 (402)
Q Consensus       361 ~-~l~et~~  368 (402)
                      + ++|+...
T Consensus       224 f~~lp~~P~  232 (495)
T KOG2533|consen  224 FFFLPDNPS  232 (495)
T ss_pred             EEEecCChh
Confidence            6 4576544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.65  E-value=1.1e-06  Score=83.66  Aligned_cols=177  Identities=16%  Similarity=0.065  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc----ccchh-HHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID----RIGRF-IIQL  234 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d----r~grr-~~~~  234 (402)
                      ..+.....+.....|++.|+.+ .|+++...+.            +..+..+...+..++.|.++|    |+||| +.++
T Consensus        14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~------------i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il   81 (473)
T PRK10429         14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGT------------LFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL   81 (473)
T ss_pred             chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence            3334444555556666767666 6998876554            777788888889999999999    56884 5555


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCCh-hHHHHHHHHHHHHHhhcCCcccceeeecccC-chhhhhhh
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGN-HAWFMILYGLTLFFANFGPNSTTFIVPAELF-PARLRSTC  312 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~  312 (402)
                      ++.+..+++.+++....  ....              .. ..+..+.+.+. ..+.........++..|+. .++.|...
T Consensus        82 ~g~i~~~i~~~llf~~p--~~~~--------------~~~~~~~~~~~~l~-~~~~t~~~ip~~al~~~lt~~~~eR~~l  144 (473)
T PRK10429         82 IGTLANSVVLFLLFSAH--LFEG--------------TAQYVFVCVTYILW-GMTYTIMDIPFWSLVPTLTLDKREREQL  144 (473)
T ss_pred             hhhHHHHHHHHHHHcCC--CCCc--------------cHHHHHHHHHHHHH-HHHHHHHcchHHhhhHHhCCCHHHHHHH
Confidence            56555555544332210  0000              11 11222222222 2222222334456678888 57889998


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCC-----CchhhhHHHHHHHHHHHHHHhh-cccC
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYTQKGDK-----QIKQSIIALAVVNFLGFLCSFM-VPET  366 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~et  366 (402)
                      .+.-.....+|+.+.+.+...+....+.     +|.....+.+++.+++.+..++ .+|.
T Consensus       145 ~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        145 VPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            8887777777766665554433222210     3444445555555544444443 3553

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.64  E-value=3.8e-07  Score=84.12  Aligned_cols=187  Identities=11%  Similarity=0.007  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch
Q 042372          152 GLHLLGTTSTWFLLDIAFYTINLTQKDIYPA--TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR  229 (402)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr  229 (402)
                      ||.++...+..+.....+.....-.-.|.++  .+-+.+..|            +..+...++.+++++..|+...|.+.
T Consensus        33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG------------~viaa~slg~~i~~liF~~Ws~k~~~  100 (488)
T KOG2325|consen   33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFG------------LVIAASSLGHAIFSLIFGIWSNKTGS  100 (488)
T ss_pred             hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhh------------HHHHHHHHHHHhcchhhcccccccCC
Confidence            3455555555555444333222222234444  333333333            36666889999999999999999986


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh
Q 042372          230 -FIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL  308 (402)
Q Consensus       230 -r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  308 (402)
                       |+.++.+.+++.++.++.....+..                 ++. ..+++..-+..+.+.+.....-.|+++..-.+.
T Consensus       101 ~k~Pli~s~ii~~~g~llY~~l~~~~-----------------~~~-~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~d  162 (488)
T KOG2325|consen  101 VKKPLIVSFLIAIIGNLLYLALAYVP-----------------NGV-KYLMLVARILTGVGVGNFAVLRAYIADASTVED  162 (488)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhcc-----------------cch-HHHHHHHHHHcCcCcccHHHHHHHHHhccCccc
Confidence             7777889988888888774433211                 112 223333333333344555677788888777788


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCC-----------CchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372          309 RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK-----------QIKQSIIALAVVNFLGFLCSFM-VPETNG  368 (402)
Q Consensus       309 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-l~et~~  368 (402)
                      |.++++.......+|.++||.+-..+......           -+..+-++++++.++.+++.++ ++|...
T Consensus       163 R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  163 RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            88888888877777888888655444332111           3456778888888887777664 466543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.64  E-value=4.6e-07  Score=85.15  Aligned_cols=171  Identities=18%  Similarity=0.177  Sum_probs=104.7

Q ss_pred             HHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc----ccchhHHHH-HHHHHHH
Q 042372          168 AFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID----RIGRFIIQL-GGFLLMS  241 (402)
Q Consensus       168 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d----r~grr~~~~-~~~~~~~  241 (402)
                      .......|++.++.+ .|+++...+.            ...+..+...+..++.|.++|    |+|||+..+ ++....+
T Consensus        16 ~~~~~~~~~~~f~~~~~gl~~~~~g~------------i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~   83 (428)
T PF13347_consen   16 IWSLLSSYLLYFYTDVLGLSPALAGL------------ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLA   83 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHH
Confidence            333344455555544 7888875444            777778888888899999999    789776554 5655555


Q ss_pred             HHHHHHHHhhc-cccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-hhhhhhhHHHHHHH
Q 042372          242 ICMAILGARYD-SLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-ARLRSTCHGISAAA  319 (402)
Q Consensus       242 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~  319 (402)
                      ++.+++..... .....              ....+..+...++ ..+.........++..|+.+ ++.|....+.....
T Consensus        84 ~~~~llf~~~p~~~~~~--------------~~~~~~~~~~~l~-~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~  148 (428)
T PF13347_consen   84 LSFFLLFSPPPAGLSFT--------------AKLVWLFVFYILF-DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIF  148 (428)
T ss_pred             HHHHHhhccccchhhhh--------------hHHHHHHHHHHHH-HHhhhhccCchhhcCccccccHhhhhhHHHHHHHH
Confidence            55554443200 00000              1111222222222 22233334445677899987 46899999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCC-----CchhhhHHHHHHHHHHHHHHhhc-cc
Q 042372          320 GKAGAIVGAFGVQYYTQKGDK-----QIKQSIIALAVVNFLGFLCSFMV-PE  365 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l-~e  365 (402)
                      ..+|..+...+.+.+.+..+.     +|+....+.+++.+++.++..+. +|
T Consensus       149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            998887777777766654432     46666777777766666665544 66

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.60  E-value=1.7e-07  Score=86.33  Aligned_cols=308  Identities=14%  Similarity=0.080  Sum_probs=148.6

Q ss_pred             hhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHH
Q 042372            5 SAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAA   84 (402)
Q Consensus         5 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~   84 (402)
                      .-+|+++.+..++|.++.+....+..+|.++||.++..+.......+.-.         . .....-+-.+-|+.++..+
T Consensus       150 lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~---------~-~~~~n~YTap~w~m~i~~i  219 (488)
T KOG2325|consen  150 LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMIL---------P-GLIFNMYTAPAWLMAILWI  219 (488)
T ss_pred             HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEc---------C-cceEEecchHHHHHHHHHH
Confidence            34789999999999999999999999999999999888874432211000         0 0011123445667777766


Q ss_pred             HHH-HHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHH
Q 042372           85 LTY-YWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWF  163 (402)
Q Consensus        85 ~~~-~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (402)
                      +.+ ++.++++|.++--..++.+.++              ++..+.           +..+.+  +-.+...+.+.+..+
T Consensus       220 ~~~v~i~~~f~E~~~~~~~~~~~~~~--------------~~~~~~-----------~~~~~~--~~d~~~~~vc~~~~~  272 (488)
T KOG2325|consen  220 IYIVIILFFFKEVYRGIIDKKKRSVE--------------EEKSDI-----------EKVKKP--KLDWVAVLVCIFLRF  272 (488)
T ss_pred             HHHHHHHhheeecccCccccccccch--------------hhccch-----------hhhccC--ChhHHHHHHHHHHHH
Confidence            644 4455678865431111000000              000000           000111  111234455555555


Q ss_pred             HHHHHHHH-HHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-cccchhHHHHHHHHHHH
Q 042372          164 LLDIAFYT-INLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLI-DRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       164 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~~~~~~~~~~  241 (402)
                      ...+.+.. .....+.....+++...++..        ..+....+.++....-.+...+.. -++.+|..++.++++..
T Consensus       273 ~~~~~~~~iet~~~~~~m~~y~w~~~~av~--------~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f  344 (488)
T KOG2325|consen  273 VVNFIATTIETLSSALTMVMYGWTGSEAVL--------YNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFF  344 (488)
T ss_pred             HHHHHHHHHHhccchHHHHHhccccchHHH--------hhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHH
Confidence            55555554 333444444457777665433        222233333332222222222222 23334555555544333


Q ss_pred             HHHHHHHHhhccccCCCCCC----CCC--CCCccCCChhHH--HHHHHHHHHHHhhcCC--cccceeeecccCchhhhhh
Q 042372          242 ICMAILGARYDSLRGKKCDA----KKD--PLHEYCDGNHAW--FMILYGLTLFFANFGP--NSTTFIVPAELFPARLRST  311 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~e~~p~~~r~~  311 (402)
                      .+..+...+..+...+-...    ...  ..-.+++.....  ...+......++...+  .....++-+|+..++.+++
T Consensus       345 ~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~  424 (488)
T KOG2325|consen  345 LSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGT  424 (488)
T ss_pred             HhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccc
Confidence            33333322221111110000    000  001122222111  1111111111111111  1223445588888899999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHH
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLC  359 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (402)
                      ..++....+..+..++|..........  +.+..+.+.++..++...+
T Consensus       425 ~qg~~~~~~s~~~~~~~~~~t~~~~~~--g~~~v~~~~~~~~l~~~~l  470 (488)
T KOG2325|consen  425 MQGVFSISGSIARVVGPIFSTAIFTLS--GPRPVWIILLCLLLVVAAL  470 (488)
T ss_pred             eeEEEEeccchhhhhhHHHHhhhHHhc--CccHHHHHHHHHHHHHHHH
Confidence            999999999999999998887777766  6776666555554444333

>TIGR00788 fbt folate/biopterin transporter

Probab=98.60  E-value=6.5e-07  Score=84.84  Aligned_cols=176  Identities=13%  Similarity=-0.025  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhh-hcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc-----
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYP-ATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG-----  228 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g-----  228 (402)
                      .......++.++.. +......+.++. ++|.+..+.+.            ......+.-.+ .++.|.++||++     
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~------------~~sl~~lpw~~-K~l~g~l~D~~~i~G~r   93 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQR------------LVGLSSLGWAL-KPFAGVMSDTFPLFGYT   93 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHH------------HHHHHHHHHHH-HHHHHHHHHhcCCCCcc
Confidence            34444466677766 444444455555 58999887543            33333333333 335899999997     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhh
Q 042372          229 RFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARL  308 (402)
Q Consensus       229 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  308 (402)
                      ||+.++++.++.+ +.....+..   .                .+......+......++........-.+..|..+ +.
T Consensus        94 Rr~~l~~~~~l~~-~~~~~~l~~---~----------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~  152 (468)
T TIGR00788        94 KRWYLVLSGLLGS-AILYGLLPG---K----------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ES  152 (468)
T ss_pred             chHHHHHHHHHHH-HHHHHhccc---c----------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cC
Confidence            6776666654442 111111110   0                1111222212222222233333455667788887 44


Q ss_pred             hhhh---HHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          309 RSTC---HGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       309 r~~~---~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      ++..   .+.......+|..+++.+.+.+.+..  +|+..|++.+++.++..+...+++|.+
T Consensus       153 ~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~--~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       153 PSAGPSLVSWMWGASATGGLISSLLGGPLLDKT--LTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             CCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHhccccc
Confidence            4443   33344444579999999999998877  899999998888887755556678764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.53  E-value=3.3e-07  Score=83.31  Aligned_cols=174  Identities=10%  Similarity=0.022  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHH
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQ  233 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  233 (402)
                      ++......+...+.+-....+.+.++++ .|++..+.|.            ..+...+..++..++.|.++||+|.|+-+
T Consensus         9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~------------i~s~~~~~~l~~qp~~G~i~Dklg~kK~L   76 (412)
T PF01306_consen    9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGI------------IFSAGSLFALLAQPVYGFISDKLGLKKHL   76 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHH------------HHHHHHHHHHHHHHhHHHhcchhhhhHHH
Confidence            3333344444444444455566777876 8999997666            88888888999999999999999976655


Q ss_pred             HHHHHHHHHHHHHHHH-hhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch---hhh
Q 042372          234 LGGFLLMSICMAILGA-RYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA---RLR  309 (402)
Q Consensus       234 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---~~r  309 (402)
                      +....+..+....+.. .......               .+.+...++..+.   .+....+..-  +.|.+-.   +..
T Consensus        77 l~~i~~l~~l~~pff~~v~~pll~---------------~n~~lg~iig~i~---l~~~f~~~~~--~~Ea~~er~sr~~  136 (412)
T PF01306_consen   77 LWFIAILLLLFGPFFIYVFGPLLQ---------------SNFWLGAIIGGIY---LGLVFNAGVP--LSEAYAERVSRRN  136 (412)
T ss_dssp             HHHHHHHHHTCHHHHHHTHHHHHH---------------TT-HHHHHHTTTT---TTTTTTTHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH---HHHHHcccch--HHHHHHHHHHHHh
Confidence            4433222211111111 1100000               1111111111111   1111111111  1343322   223


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          310 STCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       310 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +.-.|=....+.+|.++++.+.|.+.+.   +....|++..+..++..++.+..
T Consensus       137 ~feYG~~R~wGSig~ai~s~~~G~L~~i---~p~~~fwi~s~~~~il~lll~~~  187 (412)
T PF01306_consen  137 GFEYGRARMWGSIGFAIASLLAGILFNI---NPNIIFWIASAAAIILLLLLLLL  187 (412)
T ss_dssp             SS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             cCCcchHHHHhhHHHHHHHHHhheeeee---CccHHHHHHHHHHHHHHHHHHHc
Confidence            4446777888899999999999999875   45577776665555544444444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.52  E-value=1.5e-06  Score=81.37  Aligned_cols=63  Identities=5%  Similarity=-0.075  Sum_probs=45.5

Q ss_pred             HhHhhhh-hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccch-hHHHHHHHHHHHHHHHHHH
Q 042372          174 LTQKDIY-PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR-FIIQLGGFLLMSICMAILG  248 (402)
Q Consensus       174 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~  248 (402)
                      .+++.++ ++.|++..+.+.            ......++.+++.+..|.++||+|| |+.+.++.++.++...+..
T Consensus        23 ~~l~~~l~~~~g~s~~~iGl------------~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEIGW------------VYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            3444444 458899887665            7888889999999999999999965 7677766665555544443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.50  E-value=4.1e-07  Score=85.04  Aligned_cols=151  Identities=13%  Similarity=0.041  Sum_probs=81.9

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ...+..++.++|..+......+..-|+++.+..++.++..+.-......++..         -+..+. . ....--.+.
T Consensus       260 ~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~---------~Gi~d~-~-f~lgd~~l~  328 (433)
T PF03092_consen  260 LSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLD---------LGIPDQ-W-FALGDTILE  328 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeee---------eCcCCe-E-EEEEhHHHH
Confidence            44666667777776776666666777777666544433322211111111000         000001 1 111111111


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCC------CchhhhHHHHHHHHHHHH
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK------QIKQSIIALAVVNFLGFL  358 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  358 (402)
                      ......... ....+++|+.|+..-|+.+++...+.++|..++..+...+.+..+.      +.....++..++.++...
T Consensus       329 ~~~~~i~~m-P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~  407 (433)
T PF03092_consen  329 EVIGMIAFM-PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLP  407 (433)
T ss_pred             HHHHHHHHH-HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            111122222 2334569999999999999999999999999999888887766531      233444454555555555


Q ss_pred             HHhhcccCC
Q 042372          359 CSFMVPETN  367 (402)
Q Consensus       359 ~~~~l~et~  367 (402)
                      +..++|+.+
T Consensus       408 ll~lLp~~~  416 (433)
T PF03092_consen  408 LLFLLPPQK  416 (433)
T ss_pred             HHHHcCCCc
Confidence            555666543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11462 putative transporter; Provisional

Probab=98.47  E-value=6.7e-06  Score=77.88  Aligned_cols=172  Identities=21%  Similarity=0.170  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhHHH-HHHHHH
Q 042372          166 DIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFIIQ-LGGFLL  239 (402)
Q Consensus       166 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~~~-~~~~~~  239 (402)
                      +..+.....|+..|+.+ .|+++...+.            +..+.-+...+.-++.|.++||    +|||+.. +++.+.
T Consensus        22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~------------i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~   89 (460)
T PRK11462         22 HIIFDNVMLYMMFFYTDIFGIPAGFVGT------------MFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALP   89 (460)
T ss_pred             hHHHHHHHHHHHHHHHHhhCCCHHHHHH------------HHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHH
Confidence            33444445556666555 7888885444            7788888888888999999996    5776544 455555


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCCh-hHHHHHHHHHHHHHhhcCCcccceeeecccCc-hhhhhhhHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGN-HAWFMILYGLTLFFANFGPNSTTFIVPAELFP-ARLRSTCHGISA  317 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~  317 (402)
                      .+++.+++..... . ..              .. ..+..+.+.++..+ .........++.+|+.+ ++.|++..+.-.
T Consensus        90 ~~i~~~llf~~p~-~-s~--------------~~~~~y~~~~~~~~~~~-~t~~~ipy~al~~~lt~d~~eRt~l~s~r~  152 (460)
T PRK11462         90 FGIVCVLAYSTPD-L-SM--------------NGKMIYAAITYTLLTLL-YTVVNIPYCALGGVITNDPTQRISLQSWRF  152 (460)
T ss_pred             HHHHHHHHHhCCC-C-Cc--------------chHHHHHHHHHHHHHHH-HHHHhccHHHHHHHhcCCHHHHHHHHHHHH
Confidence            5555544332210 0 01              11 12222222222222 22222344566788876 688999999999


Q ss_pred             HHHHHHHHHHHHhHHHHhhhcCC-----CchhhhHHHHHHHHHHHHHHhhc-ccC
Q 042372          318 AAGKAGAIVGAFGVQYYTQKGDK-----QIKQSIIALAVVNFLGFLCSFMV-PET  366 (402)
Q Consensus       318 ~~~~~g~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l-~et  366 (402)
                      ..+.+|..+++.+...+....+.     +|.....+++++.+++.+++++. +|.
T Consensus       153 ~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        153 VLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            99999888887776554443321     45555556666555555444433 443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.46  E-value=3.1e-06  Score=77.55  Aligned_cols=143  Identities=15%  Similarity=0.070  Sum_probs=83.3

Q ss_pred             HHHHHHhhhcccchhhhhhccccchh-------HHHHHHHHHHHHHHHHHHHhhccccC-CCCCCCCCCCCccCCChhHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRF-------IIQLGGFLLMSICMAILGARYDSLRG-KKCDAKKDPLHEYCDGNHAW  276 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  276 (402)
                      ..++..+.-++.+++..++..|.+++       .-+-.+..+++.+.+++......... .+             ..+.+
T Consensus       329 fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~-------------~~s~~  395 (498)
T COG3104         329 FQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSG-------------LVSVW  395 (498)
T ss_pred             HHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------------CcCHH
Confidence            44455555555555556666664333       12233444445555444444222221 10             23334


Q ss_pred             HHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHH------HhhhcCCCchhhhHHHH
Q 042372          277 FMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY------YTQKGDKQIKQSIIALA  350 (402)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~------~~~~~~~~~~~~~~~~~  350 (402)
                      +.+...++..++.....|+..+++..+.|+...+..++........++.++..+.+.      ..+..  .....|...+
T Consensus       396 ~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~--~~~~~F~~~g  473 (498)
T COG3104         396 WLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF--IEGRVFGTIG  473 (498)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh--hhhhhHHHHH
Confidence            444445555666777888888999999999999999998888888888877766662      11222  3446666666


Q ss_pred             HHHHHHHHHHhh
Q 042372          351 VVNFLGFLCSFM  362 (402)
Q Consensus       351 ~~~~~~~~~~~~  362 (402)
                      ...++..+..+.
T Consensus       474 ~v~i~~~~~~~~  485 (498)
T COG3104         474 VVAIVIGILLLL  485 (498)
T ss_pred             HHHHHHHHHHHH
Confidence            666655554443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.42  E-value=1.4e-06  Score=80.10  Aligned_cols=134  Identities=12%  Similarity=0.135  Sum_probs=96.1

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      .......+.++.-++.+++..|+|+-+++..++.+..+=.+.+...                     .++ |.++.+=++
T Consensus       411 ~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------------------~n~-W~vLPieil  468 (618)
T KOG3762|consen  411 VSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------------------QNP-WMVLPIEIL  468 (618)
T ss_pred             hhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh---------------------cCc-hheeeHHHH
Confidence            6677778888888899999999999999888866555555444443                     222 333333333


Q ss_pred             HHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH-HHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372          285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG-KAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      .+......+...-+|++...|++.|.++.++.+... .+|-.+|+++.|.+.+..  +-+..|.++++.+++..++...
T Consensus       469 qgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f--g~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  469 QGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF--GARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee--hhHHHHHHHHHHHHHHHHHHHH
Confidence            333233334456678899999999999999887754 557779999999999887  7788888888887776666553

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.38  E-value=2.2e-05  Score=69.31  Aligned_cols=156  Identities=18%  Similarity=0.045  Sum_probs=90.4

Q ss_pred             hhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 042372          179 IYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKK  258 (402)
Q Consensus       179 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (402)
                      +.+++|++..+.+.            ++........+...+.|.++||+|||+.-+...++.+++++.-..         
T Consensus        60 LY~~yg~~~~qIa~------------Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---------  118 (354)
T PF05631_consen   60 LYESYGFSEHQIAI------------LFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---------  118 (354)
T ss_pred             HHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---------
Confidence            34568888886554            666667777777778999999999999888776666666543222         


Q ss_pred             CCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCccccee-eecc----cCchhhhhhhHHHHHH-HHHHHHHHHHHhHH
Q 042372          259 CDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFI-VPAE----LFPARLRSTCHGISAA-AGKAGAIVGAFGVQ  332 (402)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e----~~p~~~r~~~~~~~~~-~~~~g~~i~~~~~~  332 (402)
                                   ++ ...+.+-.++++....-..+..=+ ++.|    -+|.+..+...+.... .+.+-.+++..+..
T Consensus       119 -------------~~-~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~  184 (354)
T PF05631_consen  119 -------------SN-YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVAN  184 (354)
T ss_pred             -------------cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHH
Confidence                         11 122222223333222221111111 2233    3566655555555552 23334445555555


Q ss_pred             HHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCCC
Q 042372          333 YYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNGL  369 (402)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~~  369 (402)
                      .+.+..+.+...+|....++.+++.++.... +|..+.
T Consensus       185 ~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  185 VLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            6666553345788888888887777766644 776554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.38  E-value=8.7e-06  Score=75.18  Aligned_cols=162  Identities=15%  Similarity=0.087  Sum_probs=89.0

Q ss_pred             HHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccc-hhHHHHHHHHHHHHHHHHHH
Q 042372          170 YTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIG-RFIIQLGGFLLMSICMAILG  248 (402)
Q Consensus       170 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~g-rr~~~~~~~~~~~~~~~~~~  248 (402)
                      -....|.+.++++.|++..+.+.            ..+...+..+++.++.|.++||.+ +|+.+.+..++.++.+....
T Consensus        19 G~~~p~~~~~L~~~G~s~~qIG~------------l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen   19 GAFLPYLPLYLESRGFSGTQIGI------------LLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34445678899999999997666            788888889999999999999986 46666665555555443333


Q ss_pred             HhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHH
Q 042372          249 ARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGA  328 (402)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~  328 (402)
                      ..                     .+.+....+..+ .........|..-+++.+...  .++.-+|-....+.+|-+++.
T Consensus        87 ~~---------------------~~f~~~~~~~~l-~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~  142 (400)
T PF03825_consen   87 FS---------------------SSFWWLFVIMLL-FSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAA  142 (400)
T ss_pred             Hh---------------------ccHHHHHHHHHH-HHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHH
Confidence            21                     222222222222 222233333444444444433  234445556666666666664


Q ss_pred             HhH-HHHhhhcCC-CchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          329 FGV-QYYTQKGDK-QIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       329 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      ... ..+....+. +....+++.++..++.....+.+|+++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~  183 (400)
T PF03825_consen  143 LAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTP  183 (400)
T ss_pred             HHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            432 222222210 222345555554444444455567665

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.34  E-value=8.3e-06  Score=76.16  Aligned_cols=136  Identities=21%  Similarity=0.182  Sum_probs=101.4

Q ss_pred             HhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhh
Q 042372          210 LFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFAN  289 (402)
Q Consensus       210 ~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (402)
                      .+..++.+...|.++||+|||..+........+....+.+.                      . ++..++..+  .++.
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~----------------------~-~~~~~~~~l--~g~~  126 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ----------------------G-YWFFLLLGL--SGGF  126 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH----------------------H-HHHhhhccc--ccch
Confidence            45566667788999999999999988876666555554442                      2 122222222  2223


Q ss_pred             cCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh-cccCCC
Q 042372          290 FGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM-VPETNG  368 (402)
Q Consensus       290 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~et~~  368 (402)
                      ....+..++++++....+.|....|+.+.....+..++|...+......  ++..+|.+..+..+++.+...+ +||+..
T Consensus       127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~--~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL--GIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            3445577889999999999999999999999999999999999998886  8888999988888888887774 588765


Q ss_pred             CCcc
Q 042372          369 LSLE  372 (402)
Q Consensus       369 ~~~~  372 (402)
                      .+.+
T Consensus       205 ~~~~  208 (463)
T KOG2816|consen  205 EKER  208 (463)
T ss_pred             cccc
Confidence            5443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.29  E-value=6.7e-05  Score=69.33  Aligned_cols=174  Identities=20%  Similarity=0.163  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cchhH-HHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGRFI-IQL  234 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~-~~~  234 (402)
                      .-+..+..+.....|+..|..+ .|+++..++.            +..+.-+...+.-++.|.++||    +||++ .++
T Consensus        20 gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~------------iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL   87 (467)
T COG2211          20 GDFASNFAFGIVVLYLLFFYTDVFGLSAALAGT------------IFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLL   87 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHH------------HHHHHHHHHHHhcchheeeecccccccccccHHHH
Confidence            3334444445555666666666 8888885544            7888888888899999999996    56654 455


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc-hhhhhhhH
Q 042372          235 GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP-ARLRSTCH  313 (402)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~  313 (402)
                      ++.+..++...++..... ....              .......+.+.+...+ .........++.+|+.+ ++.|.+..
T Consensus        88 ~g~ip~~i~~~l~F~~p~-~~~~--------------~k~~ya~vtY~l~~l~-YT~vniPy~al~~~iT~d~~ER~~l~  151 (467)
T COG2211          88 WGAIPFAIVAVLLFITPD-FSMT--------------GKLIYALVTYMLLGLG-YTLVNIPYGALGPEITQDPQERASLT  151 (467)
T ss_pred             HHhHHHHHHHHHHHcCCC-cccC--------------cchHHHHHHHHHHHHH-HHheeCchhhcchhhcCCHHHHHHHH
Confidence            554544444444333211 1101              1122222222222222 23333334566678775 57899999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhcCC-----CchhhhHHHHHHHHHHHHHHhh
Q 042372          314 GISAAAGKAGAIVGAFGVQYYTQKGDK-----QIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      +.-+....+|.++...+.+.+....+.     +|+...++++++..+..+++++
T Consensus       152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~  205 (467)
T COG2211         152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF  205 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888888777765543     4445555555555555555443

>PRK09848 glucuronide transporter; Provisional

Probab=98.21  E-value=5.8e-05  Score=71.45  Aligned_cols=66  Identities=24%  Similarity=0.239  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc----chhHHH-HHHHHH
Q 042372          166 DIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI----GRFIIQ-LGGFLL  239 (402)
Q Consensus       166 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~----grr~~~-~~~~~~  239 (402)
                      ...+.....|++.|+++ .|++..+.+.            ...+..+...+..++.|.++||.    |||+.. +++.+.
T Consensus        21 ~~~~~~~~~~l~~y~~~~~gl~~~~~g~------------~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~   88 (448)
T PRK09848         21 NFAFAMGALFLLSYYTDVAGVGAAAAGT------------MLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP   88 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence            33444444445556665 6888876555            77888888999999999999996    766654 445443


Q ss_pred             HHHH
Q 042372          240 MSIC  243 (402)
Q Consensus       240 ~~~~  243 (402)
                      ..+.
T Consensus        89 ~~~~   92 (448)
T PRK09848         89 LMIF   92 (448)
T ss_pred             HHHH
Confidence            3333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.19  E-value=3.8e-05  Score=75.11  Aligned_cols=135  Identities=15%  Similarity=0.091  Sum_probs=87.5

Q ss_pred             cccchhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCC
Q 042372          214 VPGYWFTVFLIDR-IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGP  292 (402)
Q Consensus       214 ~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (402)
                      -+..+++|+++|+ +||++.++++.++..++.+++.+........              .......++...+...+..+.
T Consensus        37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~--------------~~~~~~~l~gLaLia~G~Ggi  102 (654)
T TIGR00926        37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH--------------PLHDLLDLLGLALIALGTGGI  102 (654)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc--------------chHHHHHHHHHHHHHhhcccc
Confidence            3344578899996 5999999999888888877776532110000              011111222222233334445


Q ss_pred             cccceeeecccCchh---hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC-----CCchhhhHHHHHHHHHHHHHHhh
Q 042372          293 NSTTFIVPAELFPAR---LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD-----KQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       293 ~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      -+...+...|.++++   .|.....+.+...++|+++++.+.+++.+..+     .+|...|.+.+++.++++++...
T Consensus       103 Kp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       103 KPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             ccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            556666777877643   47788899999999999999999998874421     15778888888887777766554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.17  E-value=8.2e-05  Score=67.63  Aligned_cols=72  Identities=10%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372            6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL   85 (402)
Q Consensus         6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~   85 (402)
                      .+|+--..|+++--++.+...++.-+|..++.++|-.+..                     .+..+.+..+.+......+
T Consensus       115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs---------------------~~~~sy~~L~~isl~~~~~  173 (412)
T PF01770_consen  115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS---------------------FGGVSYFQLNYISLASVSL  173 (412)
T ss_pred             HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hcCCCHHHHHHHHHHHHHH
Confidence            4566667788888899999999999999999999998873                     2556688888887777777


Q ss_pred             HHHHHhhcCCCch
Q 042372           86 TYYWRMKMPETAR   98 (402)
Q Consensus        86 ~~~~~~~lpesp~   98 (402)
                      .+++.+++|..++
T Consensus       174 a~~~~~fLP~~~~  186 (412)
T PF01770_consen  174 ALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHcCCCCc
Confidence            7777788887654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.0002  Score=66.22  Aligned_cols=128  Identities=16%  Similarity=0.163  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhhhcccchhhhhhccc---cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHH
Q 042372          202 SKAMFLVALFATVPGYWFTVFLIDR---IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFM  278 (402)
Q Consensus       202 ~~~~~~~~~i~~~~g~~~~g~l~dr---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (402)
                      .++......++.+.+....+.+.+|   +||++.+.++..+..+..++.........+.+ +.+.+++..   .......
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~-~t~~~~~~~---~~~~~~~  356 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLR-PTDSPPLLF---TPSYYLA  356 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCC-CCccccccc---ccchhHH
Confidence            3335556667777777777777765   57888888887666665554443322111110 001111100   1112334


Q ss_pred             HHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHH
Q 042372          279 ILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYY  334 (402)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  334 (402)
                      .+.....++.-.......+.++...+ ++.|..+.++.-.-..++..++-+..+..
T Consensus       357 ~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  357 LIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            44444555555556666777778888 46688888888887777776666555544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.09  E-value=4.1e-05  Score=69.25  Aligned_cols=118  Identities=15%  Similarity=0.065  Sum_probs=78.4

Q ss_pred             HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372          204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL  283 (402)
Q Consensus       204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (402)
                      +.+.++.+..++..+.+-|+.||+|-|...+++..+.+++..+-.+......++               .. .. .+...
T Consensus        83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~---------------~f-~~-~l~~~  145 (480)
T KOG2563|consen   83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPP---------------LF-RR-PLTHT  145 (480)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccc---------------cc-hh-hhhHH
Confidence            366777777888888899999999999999999998888877765543321111               11 11 11111


Q ss_pred             HHHHhhcC---CcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372          284 TLFFANFG---PNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       284 ~~~~~~~~---~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      .....+.+   ......-+..-.||+++|+++..+..+.+.+|.+++..+.+.+....
T Consensus       146 Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  146 GQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             hHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            11111111   11111123455799999999999999999999999998888877654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.07  E-value=9.5e-05  Score=65.14  Aligned_cols=159  Identities=17%  Similarity=0.054  Sum_probs=112.1

Q ss_pred             HHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH
Q 042372          167 IAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI  246 (402)
Q Consensus       167 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  246 (402)
                      ....+....++.+-++.|.+...++.            ...+..++....+++..++.+|+|.++.+..+.++.+++.++
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~aGl------------LTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i   93 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSVAGL------------LTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI   93 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHHHHH------------HHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34445555667777888998886665            888888888888889999999999999998887776666655


Q ss_pred             HHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHH
Q 042372          247 LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIV  326 (402)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i  326 (402)
                      =...                      .. ...+.-..+.+.+....+......+-+.||++. +..+|++.+...+++++
T Consensus        94 R~~~----------------------~~-~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaL  149 (395)
T COG2807          94 RSLG----------------------GL-PLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAAL  149 (395)
T ss_pred             Hhcc----------------------cH-HHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHH
Confidence            4432                      11 111111222222112222344456678888664 88999999999999999


Q ss_pred             HHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372          327 GAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      ++.+...+.++.+ +|+....+.+..++++++..+.
T Consensus       150 aa~lavpla~~~~-gW~~aL~~WAl~allAl~~WlP  184 (395)
T COG2807         150 AAALAVPLAQHSG-GWRGALGFWALLALLALLIWLP  184 (395)
T ss_pred             HhhhhhHHHHhhc-cHHHHHHHHHHHHHHHHHHHhh
Confidence            9988888877763 7999998888888887776653

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.06  E-value=0.00074  Score=62.53  Aligned_cols=133  Identities=13%  Similarity=0.150  Sum_probs=84.3

Q ss_pred             HHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHh
Q 042372          171 TINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGAR  250 (402)
Q Consensus       171 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  250 (402)
                      ++...+..|+...|+++...+.            .-....+.++.|.++..++.+|+|..+.=+++......+..+....
T Consensus       276 sf~~lmt~yl~~~G~s~~~igi------------~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~  343 (432)
T PF06963_consen  276 SFGGLMTAYLKSQGYSPSVIGI------------FRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS  343 (432)
T ss_pred             cCcHHHHHHHHHCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence            3444556677777999886544            6667778888888999999999999888888877666655544333


Q ss_pred             hccccCCCCCCCCCCCCccCCC-hhHH-HHHHHH-HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHH
Q 042372          251 YDSLRGKKCDAKKDPLHEYCDG-NHAW-FMILYG-LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVG  327 (402)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~  327 (402)
                      .. ....              + .... ..++.+ ...=.+-.+..-...-+..|..|++.||...|+-+..+++...+.
T Consensus       344 ~~-~~~~--------------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~  408 (432)
T PF06963_consen  344 FW-APGS--------------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS  408 (432)
T ss_pred             Hh-cCCC--------------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence            22 2211              1 1111 111111 111122333344445567899999999999999999888766654


Q ss_pred             HHh
Q 042372          328 AFG  330 (402)
Q Consensus       328 ~~~  330 (402)
                      -..
T Consensus       409 ~~~  411 (432)
T PF06963_consen  409 FVL  411 (432)
T ss_pred             HHH
Confidence            433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.93  E-value=0.00023  Score=62.14  Aligned_cols=73  Identities=7%  Similarity=0.060  Sum_probs=56.2

Q ss_pred             hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372            6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL   85 (402)
Q Consensus         6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~   85 (402)
                      ++|+-+..+|+++.++.+...+..-.|...|..++-.+..                     .+..+++..-.+......+
T Consensus       116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs---------------------~~~~sy~~LN~ISL~~~~i  174 (433)
T KOG3810|consen  116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVS---------------------LETLSYTTLNYISLAEVTI  174 (433)
T ss_pred             hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhh---------------------hcccchhhhchhhHHHHHH
Confidence            4677777899999999999999999999999999988872                     2555666666666666666


Q ss_pred             HHHHHhhcCCCchh
Q 042372           86 TYYWRMKMPETARY   99 (402)
Q Consensus        86 ~~~~~~~lpesp~~   99 (402)
                      ..++..++|..+|-
T Consensus       175 a~~~A~fLP~v~rS  188 (433)
T KOG3810|consen  175 AVLLALFLPRVKRS  188 (433)
T ss_pred             HHHHHhhCCCCchh
Confidence            66777788876654

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.82  E-value=8.2e-05  Score=50.76  Aligned_cols=64  Identities=16%  Similarity=0.094  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHH
Q 042372          163 FLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  238 (402)
                      +......-....|.|.++++.|++..+.+.            +..+..+..+++.++.|.++||++|++..+....
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGi------------l~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGI------------LSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            333344556677889999999999997666            7888888899999999999999999888776543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.76  E-value=0.00061  Score=61.46  Aligned_cols=116  Identities=17%  Similarity=-0.019  Sum_probs=72.7

Q ss_pred             ccchhhhhhccccc-----hhHHHHHH-HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHH--HHHHHHHHHH
Q 042372          215 PGYWFTVFLIDRIG-----RFIIQLGG-FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAW--FMILYGLTLF  286 (402)
Q Consensus       215 ~g~~~~g~l~dr~g-----rr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  286 (402)
                      +..+..|+.+|+.+     ||..+++. ....+.+..+..............++.        ..+..  ...+.+...+
T Consensus        29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~--------~~~~g~~~a~l~F~l~G  100 (403)
T PF03209_consen   29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG--------PFWLGLALAALAFLLYG  100 (403)
T ss_pred             HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc--------ccHHHHHHHHHHHHHHH
Confidence            35678999999998     88766654 444444444444333322221111100        12222  2222222333


Q ss_pred             HhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372          287 FANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       287 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      .+.........++.+|..|++.|+++.++.....-+|.+++..+.+.+.+..
T Consensus       101 ~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen  101 LGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             hhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            3333444566778899999999999999999999999999999999888755

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.75  E-value=0.00011  Score=56.82  Aligned_cols=70  Identities=19%  Similarity=0.294  Sum_probs=57.1

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +....++.|..|+++|++..++.+....+|..+++.+++.+.                       +..+||+.+++.++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~  126 (141)
T TIGR00880        70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA-----------------------QFLGWRAPFLFLAIL  126 (141)
T ss_pred             HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh-----------------------cccchHHHHHHHHHH
Confidence            455678899999999999999999999999999999999886                       567899999987777


Q ss_pred             HHHHHHH-HhhcCC
Q 042372           83 AALTYYW-RMKMPE   95 (402)
Q Consensus        83 ~~~~~~~-~~~lpe   95 (402)
                      .++..+. .++.||
T Consensus       127 ~~~~~~~~~~~~~~  140 (141)
T TIGR00880       127 ALAAFILLAFLLPE  140 (141)
T ss_pred             HHHHHHHHhhcCCC
Confidence            6665444 334555

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.71  E-value=5.3e-06  Score=79.38  Aligned_cols=179  Identities=12%  Similarity=0.020  Sum_probs=1.3

Q ss_pred             HhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcccc
Q 042372          176 QKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLR  255 (402)
Q Consensus       176 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  255 (402)
                      .+++-+++++++++.+.            +.+..-++.++..++..++.+|..|-+.+-+|.++++++.++++++.....
T Consensus        26 lttiErRF~l~S~~~G~------------i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~   93 (539)
T PF03137_consen   26 LTTIERRFGLSSSQSGL------------ISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSG   93 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcC
Confidence            34555568898887665            777788888888888888888877777888899999999998888764332


Q ss_pred             CCC--CCC--------CCC-C--------------CCccCCChhH---HHHHHHHHHHHHhhcCCcccceeeecccCchh
Q 042372          256 GKK--CDA--------KKD-P--------------LHEYCDGNHA---WFMILYGLTLFFANFGPNSTTFIVPAELFPAR  307 (402)
Q Consensus       256 ~~~--~~~--------~~~-~--------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  307 (402)
                      .-.  ...        +.+ +              ...-......   .+.++.-++.+.+....+++..+|+=|..+++
T Consensus        94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~  173 (539)
T PF03137_consen   94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK  173 (539)
T ss_dssp             ----------------------------------------------------------SSS-------------------
T ss_pred             CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc
Confidence            110  000        000 0              0000011111   12222223334444556677888999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC----------------C----CchhhhHHHHHHHHHHHHHHhhcccC
Q 042372          308 LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD----------------K----QIKQSIIALAVVNFLGFLCSFMVPET  366 (402)
Q Consensus       308 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~~~~~l~et  366 (402)
                      .-+...|+.+....+|-++|-.+.+......-                .    .|+.-|++.+++.++..+..+++|+.
T Consensus       174 ~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  174 NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            99999999999888888877766665442210                0    36666777777777666666666654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.68  E-value=0.00082  Score=63.08  Aligned_cols=153  Identities=15%  Similarity=0.120  Sum_probs=89.4

Q ss_pred             hhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcc--cchhhhhhcccc-----chhHHHHHHHHHHHHHHHHHHH
Q 042372          177 KDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVP--GYWFTVFLIDRI-----GRFIIQLGGFLLMSICMAILGA  249 (402)
Q Consensus       177 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--g~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~  249 (402)
                      +.+.+++|.++.+.+               ....+..++  ..++.|.++|-+     .||+-++++.++.+++...++.
T Consensus        14 ~~l~~~l~ls~~~~~---------------~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~   78 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQ---------------RLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL   78 (433)
T ss_pred             HHHHHHcCCCHHHHH---------------HHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            344456888888633               223333332  344789999986     3556666666555444444444


Q ss_pred             hhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccC---chhhhhhhHHHHHHHHHHHHHH
Q 042372          250 RYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELF---PARLRSTCHGISAAAGKAGAIV  326 (402)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~g~~i  326 (402)
                      ....                  ........++.+...++........-++..|..   |.+ |+...+.......+|+++
T Consensus        79 ~~~~------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv  139 (433)
T PF03092_consen   79 LPAS------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLV  139 (433)
T ss_pred             cccc------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHH
Confidence            2110                  011111111111111211112222333445554   545 888889999999999999


Q ss_pred             HHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-cc
Q 042372          327 GAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PE  365 (402)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e  365 (402)
                      +..+.|.+.+..  +++..|.+.+.+.++..+..+++ +|
T Consensus       140 ~~~l~G~l~~~~--~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  140 GSLLSGPLLDSF--GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHhhhhhhhcC--CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            999999998887  77888888887777776666655 55

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.67  E-value=0.00047  Score=67.00  Aligned_cols=179  Identities=10%  Similarity=-0.029  Sum_probs=115.9

Q ss_pred             hhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCC---
Q 042372          181 PATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGK---  257 (402)
Q Consensus       181 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---  257 (402)
                      +++++++++.+.            +...+=++..+...+..+..-|.-|-+.+-+|.++++++.++.+++......-   
T Consensus       125 rRF~i~Ss~sG~------------I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~  192 (735)
T KOG3626|consen  125 RRFKISSSQSGL------------IASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE  192 (735)
T ss_pred             hhcCCCCCccee------------EeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence            347888876555            55555666666666777888888888888889999999988888774322110   


Q ss_pred             ------CCCCC--------------------CCCCCccCCCh-hHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372          258 ------KCDAK--------------------KDPLHEYCDGN-HAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS  310 (402)
Q Consensus       258 ------~~~~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  310 (402)
                            ...++                    .+...+..++. .+.++++.-++.+.+.....+...+|+=|...++.-+
T Consensus       193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Sp  272 (735)
T KOG3626|consen  193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSP  272 (735)
T ss_pred             hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCc
Confidence                  00000                    11111111122 2223333334445555666777888889998888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhhcCC-----------------CchhhhHHHHHHHHHHHHHHhhcccCCCCCc
Q 042372          311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDK-----------------QIKQSIIALAVVNFLGFLCSFMVPETNGLSL  371 (402)
Q Consensus       311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~et~~~~~  371 (402)
                      ...|+.+++..+|-++|-++.+.+.....+                 .|+.-|++.+.+.++..+..+++|++..+..
T Consensus       273 lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~  350 (735)
T KOG3626|consen  273 LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ  350 (735)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence            889999999888888888777766532110                 4667778888888888888888887665544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.66  E-value=0.0055  Score=55.95  Aligned_cols=43  Identities=16%  Similarity=0.130  Sum_probs=32.6

Q ss_pred             cccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372          293 NSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT  335 (402)
Q Consensus       293 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  335 (402)
                      +...+..+.|..|++.|..++|.....-.+|..++..+.-.+-
T Consensus       353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3344555677789999999999999998888888776665543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.65  E-value=0.0018  Score=61.38  Aligned_cols=144  Identities=16%  Similarity=0.059  Sum_probs=83.0

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH-HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS-ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL  283 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (402)
                      ..++..+...+-.++.|-++|+-++||.++..+.+.+ ++.+.+.+..     .              ..++...+++.+
T Consensus        75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~-----~--------------~~~~~~~~l~ii  135 (477)
T PF11700_consen   75 ANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS-----P--------------GQWWLALVLFII  135 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC-----c--------------chHHHHHHHHHH
Confidence            4455566666677788999999988776665544333 3444333321     1              222222333333


Q ss_pred             HHHHhhcCCcccceeeecccCchhhh--------------------------hhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372          284 TLFFANFGPNSTTFIVPAELFPARLR--------------------------STCHGISAAAGKAGAIVGAFGVQYYTQK  337 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~g~~i~~~~~~~~~~~  337 (402)
                      ...+... ......++..|+.+++.+                          ++..+.....+++|+.+.-.+.-.+...
T Consensus       136 a~v~~~~-~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~  214 (477)
T PF11700_consen  136 ANVGYEA-SNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVIS  214 (477)
T ss_pred             HHHHHHH-HHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2222222 223445667888887777                          8999999999999988776655444332


Q ss_pred             cCC------CchhhhHHHHHHHHHHH-HHHhhcccCCC
Q 042372          338 GDK------QIKQSIIALAVVNFLGF-LCSFMVPETNG  368 (402)
Q Consensus       338 ~~~------~~~~~~~~~~~~~~~~~-~~~~~l~et~~  368 (402)
                      .+.      ..+..+.+.++..++.. ...+++|+.++
T Consensus       215 ~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  215 PGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             CCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            211      24666776666655444 34445676654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.49  E-value=0.0077  Score=56.59  Aligned_cols=119  Identities=9%  Similarity=0.033  Sum_probs=69.9

Q ss_pred             chhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCC-CCCccCCC--------hhHHHHHHHHHHHH
Q 042372          217 YWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGK-KCDAKKD-PLHEYCDG--------NHAWFMILYGLTLF  286 (402)
Q Consensus       217 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~  286 (402)
                      .++.+++++|++|++++.+..........++++......+. +.+.-.| ........        ..|...+.+...-.
T Consensus        61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el  140 (472)
T TIGR00769        61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL  140 (472)
T ss_pred             HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence            45689999999999988776666666666555543321111 0000000 00000000        01111122222222


Q ss_pred             HhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372          287 FANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT  335 (402)
Q Consensus       287 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  335 (402)
                      .......-..|.+++|++..++..+-.++....+++|.++++.+..++.
T Consensus       141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222267889999999999999999999999999999998887766

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.48  E-value=0.0072  Score=55.26  Aligned_cols=126  Identities=11%  Similarity=-0.014  Sum_probs=78.5

Q ss_pred             hhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCccccee
Q 042372          219 FTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFI  298 (402)
Q Consensus       219 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (402)
                      ....+.|.+|-|++++.+.+...+...++.+.                     .+...+.++-...+..  .+.-...++
T Consensus        60 ~vflltd~l~Ykpviil~~~~~i~t~~lll~~---------------------~sv~~mq~~q~~yg~~--~a~evay~s  116 (412)
T PF01770_consen   60 PVFLLTDYLRYKPVIILQALSYIITWLLLLFG---------------------TSVLAMQLMQFFYGLA--TAAEVAYYS  116 (412)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---------------------CcHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            56789999999999999877766666655553                     2222333322222221  111223344


Q ss_pred             eecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcccCC
Q 042372          299 VPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVPETN  367 (402)
Q Consensus       299 ~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~et~  367 (402)
                      |+=...|+++=-++.+......-+|.+++..++-.+....+.++.....+......+++++.+++|..+
T Consensus       117 Yiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~  185 (412)
T PF01770_consen  117 YIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK  185 (412)
T ss_pred             HheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            444555666656667777777777888888777766664433566666666666777777777887644

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.15  E-value=0.012  Score=49.86  Aligned_cols=59  Identities=10%  Similarity=0.050  Sum_probs=36.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHHHHHHhh
Q 042372           16 RTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALTYYWRMK   92 (402)
Q Consensus        16 ~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~~~~~~~   92 (402)
                      |+|+..+.+-..+.++|.++.-..-..-...-                  ......|++++.+.+++.++-++.+..
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~------------------~~~~~~W~~I~si~~lL~~IpLIly~i   60 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVV------------------IALTNNWQWILSIFILLIFIPLILYII   60 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778887778888888887765432210000                  112345999999888776665554443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.04  E-value=0.02  Score=50.46  Aligned_cols=129  Identities=17%  Similarity=0.171  Sum_probs=74.6

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLT  284 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (402)
                      ......+...++.++.|.+.||+|||+.+..+......+.+...+...    .               .. .........
T Consensus        44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~-~~~~~~~~~  103 (338)
T COG0477          44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN----V---------------GL-ALLLILRLL  103 (338)
T ss_pred             HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc----c---------------hH-HHHHHHHHH
Confidence            445555555666688999999999997777766543333222222211    0               11 222222222


Q ss_pred             HHHhhcCCcccceeeecccCch-hhhhhhHHHHHH-HHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHH
Q 042372          285 LFFANFGPNSTTFIVPAELFPA-RLRSTCHGISAA-AGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVN  353 (402)
Q Consensus       285 ~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (402)
                      .+.......+....+..|.+|. +.|+...+.... ...++..+++.+.+.+......+|+..+.+.....
T Consensus       104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            2332334455667778899887 678888888777 56777778876666555441116777555444443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.04  E-value=0.014  Score=45.99  Aligned_cols=103  Identities=14%  Similarity=-0.003  Sum_probs=64.5

Q ss_pred             HhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhh
Q 042372          210 LFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFAN  289 (402)
Q Consensus       210 ~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (402)
                      .....+.+++.+.+.+++|.|+.++++.+...+.......                      .+. ..++....+.+++.
T Consensus        47 Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----------------------~~~-~~l~~~s~l~G~~~  103 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----------------------PNS-YTLYPASALLGFGA  103 (156)
T ss_pred             HHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------------------hhH-HHHHHHHHHHhhhh
Confidence            3334455567889999999999999996655544333222                      122 23333333333333


Q ss_pred             cCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHh
Q 042372          290 FGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYT  335 (402)
Q Consensus       290 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  335 (402)
                      ...+...-.++.+...++.|++-.++.-.+...+.++|....-.+.
T Consensus       104 a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  104 ALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344456778888888999888888888888777776655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.02  E-value=0.021  Score=53.05  Aligned_cols=43  Identities=9%  Similarity=0.030  Sum_probs=32.6

Q ss_pred             cceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372          295 TTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK  337 (402)
Q Consensus       295 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  337 (402)
                      ...+.-+.+..|..-|+.+.+.+++.++|+-.-..+.-++.|.
T Consensus       425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            3344557777889999999999999999987666666666554

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.97  E-value=0.35  Score=45.70  Aligned_cols=40  Identities=15%  Similarity=0.109  Sum_probs=36.1

Q ss_pred             hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042372            6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSG   45 (402)
Q Consensus         6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~   45 (402)
                      ..++.|.++.++-.|..+++..+.++|.++++.+...+.+
T Consensus       151 W~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       151 WGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999988888764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.90  E-value=0.062  Score=49.85  Aligned_cols=125  Identities=5%  Similarity=-0.104  Sum_probs=76.2

Q ss_pred             hcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCC----------CC-CCCCccCCChhHHHHHHH
Q 042372          213 TVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDA----------KK-DPLHEYCDGNHAWFMILY  281 (402)
Q Consensus       213 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~  281 (402)
                      +++..++..++.+++.|++++.+.......+.+++++..+...+.-.++          ++ +-.+....-+.|...+.+
T Consensus        75 avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Y  154 (509)
T COG3202          75 AVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFY  154 (509)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHH
Confidence            3444556788999999999887777776777777766554222110011          11 111222122223333333


Q ss_pred             HHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 042372          282 GLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQK  337 (402)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  337 (402)
                      ...-..+.....-..|..+.|+...+...+-+++.+...+++..++..+..++...
T Consensus       155 i~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         155 IMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33222222222335667789999999999999999999999999888888777653

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.88  E-value=0.17  Score=47.57  Aligned_cols=39  Identities=13%  Similarity=0.050  Sum_probs=29.2

Q ss_pred             ccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHH
Q 042372          294 STTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQ  332 (402)
Q Consensus       294 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~  332 (402)
                      +..+.+..+..+++.|..+..+....-.+|-.+|..+.-
T Consensus       391 s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       391 SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677888899998888888888888777776543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.77  E-value=0.094  Score=48.85  Aligned_cols=145  Identities=10%  Similarity=-0.024  Sum_probs=77.3

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH----HHHhhccccCCCCCCCCCCCCccCCChhHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI----LGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMIL  280 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (402)
                      ....-.+..++.+...|...||..|.+....+.+..-+...+    +............ +         .........+
T Consensus        43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~-~---------~~~~~~l~~~  112 (432)
T PF06963_consen   43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQ-S---------SWLFIALFAL  112 (432)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccc-c---------chHHHHHHHH
Confidence            555566667777778899999999988776665544333222    2221111111000 0         0111111111


Q ss_pred             HHHHHHHhhcCCcccceee----ecccC--chhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHH
Q 042372          281 YGLTLFFANFGPNSTTFIV----PAELF--PARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNF  354 (402)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~----~~e~~--p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (402)
                      ..+.......+......+.    +..+.  .+......++...-+-.+..+++|++.|.+....  +......+.++.++
T Consensus       113 ~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~--s~~~~~~~i~~~N~  190 (432)
T PF06963_consen  113 LILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA--SPVIAAIFIAGWNL  190 (432)
T ss_pred             HHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CHHHHHHHHHHHHH
Confidence            1111111111111111111    11222  3444566666666666678999999999998866  77777888888888


Q ss_pred             HHHHHHh
Q 042372          355 LGFLCSF  361 (402)
Q Consensus       355 ~~~~~~~  361 (402)
                      ++.+.=+
T Consensus       191 ~S~~vEy  197 (432)
T PF06963_consen  191 ASVFVEY  197 (432)
T ss_pred             HHHHHHH
Confidence            8877644

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.74  E-value=0.011  Score=40.76  Aligned_cols=72  Identities=13%  Similarity=0.087  Sum_probs=59.3

Q ss_pred             HHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHH
Q 042372          167 IAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAI  246 (402)
Q Consensus       167 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~  246 (402)
                      ++-+..+..+|.+.++.+++..+.+.            +.+.+.++.++|.+...++.++.++++.+..+.+...+..+.
T Consensus         6 igRFayTplLP~M~~~~~ls~~~ag~------------lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~   73 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQADGGLSLSQAGW------------LASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAA   73 (85)
T ss_pred             hHHHHHHhHhHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            44556666789999999999987665            888899999999999999999988888888888887777777


Q ss_pred             HHHh
Q 042372          247 LGAR  250 (402)
Q Consensus       247 ~~~~  250 (402)
                      +++.
T Consensus        74 ma~~   77 (85)
T PF06779_consen   74 MALT   77 (85)
T ss_pred             HHHH
Confidence            7664

Note that many members are hypothetical proteins.

>TIGR01272 gluP glucose/galactose transporter

Probab=96.59  E-value=0.0063  Score=54.46  Aligned_cols=78  Identities=14%  Similarity=0.015  Sum_probs=56.9

Q ss_pred             hcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcC--------------CCchhhhHHHHHHHH
Q 042372          289 NFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGD--------------KQIKQSIIALAVVNF  354 (402)
Q Consensus       289 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~  354 (402)
                      .....+....+++++.|++.+++..++.+.++.+|..++|.+.+.+.....              ..|+.++++.+.+.+
T Consensus        24 ~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~  103 (310)
T TIGR01272        24 LTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALA  103 (310)
T ss_pred             HHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            344455677788999999899999999999999999999999987773210              157788886666655


Q ss_pred             HHHHHHhhc--ccC
Q 042372          355 LGFLCSFMV--PET  366 (402)
Q Consensus       355 ~~~~~~~~l--~et  366 (402)
                      +..+...+.  ||.
T Consensus       104 ~~~i~~~~~~~p~~  117 (310)
T TIGR01272       104 VLAIIFAFLPLPEL  117 (310)
T ss_pred             HHHHHHHHccCCCC
Confidence            555444444  554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.26  E-value=0.0038  Score=53.37  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=68.7

Q ss_pred             HHHHHHhhhcccchhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDR-IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL  283 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (402)
                      ++++...-.++-++++|++.|| +|-|...++-+....++.++++.-...                  ...+.+...-.+
T Consensus        84 lYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~------------------~aFw~M~~GRF~  145 (459)
T KOG4686|consen   84 LYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS------------------HAFWTMLAGRFL  145 (459)
T ss_pred             eeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH------------------HHHHHHHhhhee
Confidence            5555666677778899999997 466655555544445555544432110                  111122211111


Q ss_pred             HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372          284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      + +.++-........|..-.|..+.-+.++|+...+.++|+.+.-.+.+++.+..
T Consensus       146 F-GIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  146 F-GIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             e-ccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            1 11111122234556777788888899999999999999887777777777654

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.24  E-value=1.2  Score=42.55  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=35.7

Q ss_pred             hHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042372            6 AVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSG   45 (402)
Q Consensus         6 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~   45 (402)
                      ..+..|.++.++-.|..++++.+.++|.++++.+...+.+
T Consensus       166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999988888875

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.01  E-value=0.036  Score=50.90  Aligned_cols=157  Identities=15%  Similarity=0.091  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc----cch
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR----IGR  229 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr----~gr  229 (402)
                      ..+.+....+...+++-.-..|.+.+.+++|...+-.++            .-...-+..++..++.|..+||    +||
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~------------iw~~gPi~G~~vQP~vG~~SDrc~sr~GR  100 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSI------------IWLCGPLSGLLVQPLVGSASDRCTSRYGR  100 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccc------------cccccccccceeccccccccccccccccc
Confidence            455555556666666667777888899999988875332            3444445566667788999996    688


Q ss_pred             hHHHHH-HHHHHHHHHHHHHHhhcccc--CCCCCCCCCCCCccCCChhHHHHHHHHHHH---HHhhcCCcccceeeeccc
Q 042372          230 FIIQLG-GFLLMSICMAILGARYDSLR--GKKCDAKKDPLHEYCDGNHAWFMILYGLTL---FFANFGPNSTTFIVPAEL  303 (402)
Q Consensus       230 r~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~e~  303 (402)
                      |+.++. +.+...+.++++........  .++...          ......+.+..+..   =+.........-++..|+
T Consensus       101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~----------~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl  170 (498)
T KOG0637|consen  101 RRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK----------PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADL  170 (498)
T ss_pred             ccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc----------ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHh
Confidence            766554 44444555555444321110  010000          00111122221111   122223334556777888


Q ss_pred             Cchhhhhh-hHHHHHHHHHHHHHHHHHhHH
Q 042372          304 FPARLRST-CHGISAAAGKAGAIVGAFGVQ  332 (402)
Q Consensus       304 ~p~~~r~~-~~~~~~~~~~~g~~i~~~~~~  332 (402)
                      .....+.+ +++....+..+|+.+|-...+
T Consensus       171 ~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  171 ARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             ccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            87666666 888888888888887776665

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.99  E-value=0.44  Score=46.35  Aligned_cols=146  Identities=15%  Similarity=0.078  Sum_probs=87.3

Q ss_pred             cccchhhhhhcccc-chhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCC-hhHH--HHHHHHHHHHHhh
Q 042372          214 VPGYWFTVFLIDRI-GRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDG-NHAW--FMILYGLTLFFAN  289 (402)
Q Consensus       214 ~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~  289 (402)
                      ....+++++++|.+ ||-+.+.++.++..++++++.............-...+....+.. ....  .+.........+.
T Consensus        87 ~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~  166 (571)
T KOG1237|consen   87 FLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGA  166 (571)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheecc
Confidence            34445788999975 888898888888887766665544322211000000000001111 1111  1222222223345


Q ss_pred             cCCcccceeeecccCc----hhhh--hhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh
Q 042372          290 FGPNSTTFIVPAELFP----ARLR--STCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF  361 (402)
Q Consensus       290 ~~~~~~~~~~~~e~~p----~~~r--~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (402)
                      .+.-+....+-+|-++    .+.+  ..-+...+...++|..++..+..+..+..  +|...|.+..++.+++.++.+
T Consensus       167 gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~--~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  167 GGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV--GWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             CCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc--cceeeccHHHHHHHHHHHHHH
Confidence            5556677777888887    2222  35567777788888888888888887766  899889888888887776655

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.95  E-value=1.5  Score=41.18  Aligned_cols=39  Identities=13%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042372            7 VIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSG   45 (402)
Q Consensus         7 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~   45 (402)
                      ....|.+..++-.|..++++.+.+++..+++.+..++.+
T Consensus       171 ~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         171 QFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456788899999999999999999999999998888874

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.95  E-value=0.0015  Score=58.32  Aligned_cols=39  Identities=8%  Similarity=0.083  Sum_probs=2.4

Q ss_pred             cccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH
Q 042372          293 NSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV  331 (402)
Q Consensus       293 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~  331 (402)
                      .+..+.+..+..+++.|..+-.+....-.+|-.+|..+.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             -HHHH----------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778888888888887777777777766666543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.92  E-value=0.18  Score=47.84  Aligned_cols=121  Identities=11%  Similarity=-0.042  Sum_probs=69.1

Q ss_pred             cchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhcccc---CCCCCCCCCCCCccC-------CChhHHHHHHHHHHH
Q 042372          216 GYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLR---GKKCDAKKDPLHEYC-------DGNHAWFMILYGLTL  285 (402)
Q Consensus       216 g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  285 (402)
                      ...+..+++++++|.+++.+..........++++..+...   +.+...+++....+.       .-+.|...+.+...-
T Consensus        75 f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aE  154 (491)
T PF03219_consen   75 FTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAE  154 (491)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            3346789999999999887666555555555555432111   110000000000000       000111111222212


Q ss_pred             HHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhh
Q 042372          286 FFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQ  336 (402)
Q Consensus       286 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  336 (402)
                      ..+.....-..|.++.|+++.+...+-+++....+++|.+++.....++.+
T Consensus       155 lwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  155 LWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222568889999999999999999999999999999888777766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.89  E-value=0.044  Score=50.52  Aligned_cols=117  Identities=11%  Similarity=-0.031  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchh---
Q 042372          231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR---  307 (402)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---  307 (402)
                      +.++++.++..++.+++.+........+             +.......+...+...+..+.=+....+..|.++++   
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~-------------~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPS-------------GIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhh-------------hHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence            4566777777888777655543222110             111122222222334445555666777788888764   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372          308 LRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       308 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      .|.+.....+...++|..++....+++.+..  +|...|.+.++..+++.+..+.
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~--~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY--GWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS---HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhcccc--chhhhhhHHHHHHHHHHHHHHh
Confidence            5777888899999999999999999999777  8999999988888887776654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.46  E-value=0.012  Score=53.81  Aligned_cols=38  Identities=5%  Similarity=0.103  Sum_probs=30.8

Q ss_pred             hhHHhhhhccccchhH-HHHHHHHHHHHHHHHHHHHHHH
Q 042372            5 SAVIMSEYANKRTRGA-FIAAVFAMQGMGILFAGVISLI   42 (402)
Q Consensus         5 ~~~~i~e~~~~~~rg~-~~~~~~~~~~lG~~~~~~~~~~   42 (402)
                      +-++++|.+.+++|.+ +.+.+..+..+|..+|..++.+
T Consensus       163 ~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  163 CRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             HHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence            4478889997777666 9999999999999988887753

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.42  E-value=1  Score=41.25  Aligned_cols=38  Identities=8%  Similarity=0.080  Sum_probs=25.0

Q ss_pred             CcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHH
Q 042372          292 PNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAF  329 (402)
Q Consensus       292 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~  329 (402)
                      ..+..+.+..+..|++.+-.+-.+....-..|-+.|..
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~  397 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL  397 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34466778888888888777766666555555555543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.23  E-value=0.21  Score=45.84  Aligned_cols=41  Identities=17%  Similarity=0.217  Sum_probs=23.0

Q ss_pred             HHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          322 AGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .++.+|+.....+.. .+.+.+..++++..+.++-.+..+++
T Consensus       154 ~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  154 GAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             hhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            355566665555554 32255667777776665555444433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=94.78  E-value=0.41  Score=43.80  Aligned_cols=144  Identities=14%  Similarity=-0.020  Sum_probs=74.3

Q ss_pred             HHHHHHhhhcccchhhhhhccccchhHHHHHHH-HHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGF-LLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL  283 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (402)
                      ..++..+...+-+++.|.++|+.|+|+..+..+ .+..++.+.+.+...                   .+.++..+++..
T Consensus        63 ~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~-------------------~s~~~~~l~~~i  123 (438)
T COG2270          63 ASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP-------------------GSYLLLLLLFLI  123 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC-------------------CchHHHHHHHHH
Confidence            344444555555667899999999776655443 333344444433211                   122333333333


Q ss_pred             HHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhH--HHHhh--------------hcCCCchhhhH
Q 042372          284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGV--QYYTQ--------------KGDKQIKQSII  347 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~--~~~~~--------------~~~~~~~~~~~  347 (402)
                      ....+.........++..++.+++.-++..++....+++|+.+.-...  .....              ..+...+.++.
T Consensus       124 l~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~  203 (438)
T COG2270         124 LASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGL  203 (438)
T ss_pred             HHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHH
Confidence            222222222334455667788877777777887777777776544332  11111              01114566777


Q ss_pred             HHHHHHHHHHHHHh-hcccCC
Q 042372          348 ALAVVNFLGFLCSF-MVPETN  367 (402)
Q Consensus       348 ~~~~~~~~~~~~~~-~l~et~  367 (402)
                      +.++..++..+-.+ ..++..
T Consensus       204 l~A~W~li~~iPm~~~v~~~~  224 (438)
T COG2270         204 LAALWWLLFALPMILNVHDAE  224 (438)
T ss_pred             HHHHHHHHHHhHHHhcccccc
Confidence            76666655444333 445443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.70  E-value=0.42  Score=44.76  Aligned_cols=36  Identities=6%  Similarity=-0.104  Sum_probs=19.2

Q ss_pred             eeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHH
Q 042372          298 IVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY  333 (402)
Q Consensus       298 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~  333 (402)
                      .+.-.+..++.++.+.........+|-+++-.++-.
T Consensus       141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFla  176 (544)
T PF13000_consen  141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLA  176 (544)
T ss_pred             hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHh
Confidence            344556666777766544444445555554444433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.58  E-value=0.34  Score=43.70  Aligned_cols=68  Identities=15%  Similarity=0.062  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc-----cc
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLID-----RI  227 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~d-----r~  227 (402)
                      +.+..+.+.+..+++-+ +.....|.+++.-|.|-++.+.            ......=..  --+++..++|     |+
T Consensus        31 ~~illLl~LYllQGiP~-GL~~~iP~lL~ak~vSyt~~a~------------fS~ay~P~s--LKllWaPiVDs~y~k~~   95 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPL-GLIGAIPLLLQAKGVSYTSQAI------------FSFAYWPFS--LKLLWAPIVDSVYSKRF   95 (510)
T ss_pred             hhHHHHHHHHHHcCCch-hHhhhhHHHhcCCCcchhhhhh------------hhhhhhHHH--HHHHHHhhhHHHHHHhh
Confidence            45666667777766544 3333778888876666554332            111111000  1235677788     99


Q ss_pred             chhHHHHH
Q 042372          228 GRFIIQLG  235 (402)
Q Consensus       228 grr~~~~~  235 (402)
                      |||+..++
T Consensus        96 GrrksWvv  103 (510)
T KOG3574|consen   96 GRRKSWVV  103 (510)
T ss_pred             ccccceee
Confidence            99986554

>PRK03612 spermidine synthase; Provisional

Probab=94.20  E-value=1.5  Score=42.39  Aligned_cols=44  Identities=18%  Similarity=0.233  Sum_probs=28.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHhh-hcCCCchhhhHHHHHHHHH
Q 042372          310 STCHGISAAAGKAGAIVGAFGVQYYTQ-KGDKQIKQSIIALAVVNFL  355 (402)
Q Consensus       310 ~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  355 (402)
                      +...|-.+....+|+++|+++.+++.- ..  |.....++.+.+.++
T Consensus       144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l--G~~~t~~~~a~l~~~  188 (521)
T PRK03612        144 GHNVATVLAADYLGALVGGLAFPFLLLPRL--GLIRTAALTGSLNLL  188 (521)
T ss_pred             hhhhhhhHhHHhHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHH
Confidence            556788888899999999988776654 34  444444444444433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=93.94  E-value=4.2  Score=40.47  Aligned_cols=72  Identities=15%  Similarity=0.148  Sum_probs=47.9

Q ss_pred             CchhHHhhhhcccc---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHh
Q 042372            3 PLSAVIMSEYANKR---TRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFG   79 (402)
Q Consensus         3 ~~~~~~i~e~~~~~---~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~   79 (402)
                      |...+...|.++++   +|-....++..+.++|.+++..+..++......                .....+|...|.+.
T Consensus       104 p~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~----------------fg~~~~~~~aF~i~  167 (654)
T TIGR00926       104 PCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC----------------FGCQDCYPLAFGVP  167 (654)
T ss_pred             cCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------cccCcchHHHHHHH
Confidence            44566777777654   366677777888889988888888777521100                01245799999998


Q ss_pred             hHHHHHHHHHH
Q 042372           80 AVPAALTYYWR   90 (402)
Q Consensus        80 ~i~~~~~~~~~   90 (402)
                      ++..++.++..
T Consensus       168 ~i~m~ia~lvf  178 (654)
T TIGR00926       168 AILMILALIVF  178 (654)
T ss_pred             HHHHHHHHHHH
Confidence            77766655443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=93.84  E-value=0.018  Score=53.90  Aligned_cols=64  Identities=17%  Similarity=0.076  Sum_probs=49.6

Q ss_pred             HHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHH
Q 042372          168 AFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSIC  243 (402)
Q Consensus       168 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~  243 (402)
                      .+-.+..+++.++.++|+++.+.+.            +....-+..+++.+++|+++||+.+|+.++++.++..+.
T Consensus        26 ~~g~l~pll~vy~kQLGl~p~~~Gt------------l~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~   89 (618)
T KOG3762|consen   26 RFGSLFPLLAVYFKQLGLNPAVVGT------------LTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVT   89 (618)
T ss_pred             cccccchHHHHHHHHcCCCHHHhhh------------hhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            3445666788899999999997665            666677778889999999999998877777666554443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=92.83  E-value=1.1  Score=40.53  Aligned_cols=44  Identities=7%  Similarity=-0.008  Sum_probs=35.7

Q ss_pred             cceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372          295 TTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       295 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      ..++..+.+.++...|+.+.+.++..++|+-.-..+..++.+..
T Consensus       389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL  432 (510)
T ss_pred             HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence            34456688899999999999999999999887777777776643

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=92.16  E-value=8.7  Score=34.71  Aligned_cols=78  Identities=13%  Similarity=0.074  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-cccchhHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLI-DRIGRFII  232 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~  232 (402)
                      ...............+.....|.|.+-.+ + .....|.            ++....++.++|+.+..++. ++......
T Consensus       246 il~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~Gl------------IFssFM~a~MlGS~lf~~l~s~~~~~e~~  311 (354)
T PF05631_consen  246 ILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGL------------IFSSFMVAMMLGSSLFSRLLSKSLRPESL  311 (354)
T ss_pred             hHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchH------------HHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            34444444444555555556677776522 1 0111222            67777788888888776544 44443444


Q ss_pred             HHHHHHHHHHHHH
Q 042372          233 QLGGFLLMSICMA  245 (402)
Q Consensus       233 ~~~~~~~~~~~~~  245 (402)
                      +.....+.++++.
T Consensus       312 l~~v~~~aa~~l~  324 (354)
T PF05631_consen  312 LRYVFAVAAVSLA  324 (354)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444344433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=92.00  E-value=7.7  Score=35.73  Aligned_cols=63  Identities=11%  Similarity=-0.052  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR  226 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr  226 (402)
                      .+..++...+....++.+..-.+++.+++-..+.+..         ....+.....+..++....-.++.-|
T Consensus        20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~---------F~~~~~~~a~i~~ll~~~~n~~~~~~   82 (406)
T KOG1479|consen   20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKN---------FTSSYTLAAQIPLLLFNLLNAFLNTR   82 (406)
T ss_pred             HHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444555555555666555322222211         11123334444445555555666666

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.44  E-value=1.6  Score=41.02  Aligned_cols=105  Identities=10%  Similarity=-0.070  Sum_probs=68.6

Q ss_pred             HHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHH
Q 042372          206 FLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTL  285 (402)
Q Consensus       206 ~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (402)
                      ..+......+.+++++.+.|+++.|+.+.++.....+....+...                     + . ..........
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~---------------------N-~-y~~yfssall  112 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP---------------------N-S-YYLYFSSALL  112 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc---------------------c-h-HHHHHHHHHh
Confidence            334444555666788999999999999999976665555444442                     2 1 2333333333


Q ss_pred             HHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHH
Q 042372          286 FFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQY  333 (402)
Q Consensus       286 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~  333 (402)
                      +++....+...-.|.+|....+.+.+-.++.-.+...+.++|......
T Consensus       113 G~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  113 GFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            333333333445678999999999999999888888888877654433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.96  E-value=0.83  Score=39.22  Aligned_cols=25  Identities=16%  Similarity=-0.105  Sum_probs=17.6

Q ss_pred             hhcccchhhhhhccccchhHHHHHH
Q 042372          212 ATVPGYWFTVFLIDRIGRFIIQLGG  236 (402)
Q Consensus       212 ~~~~g~~~~g~l~dr~grr~~~~~~  236 (402)
                      ..++...+.|-+.||.|||+.-+.-
T Consensus        84 SsmLFGtivgSLaDkqGRKracvty  108 (454)
T KOG4332|consen   84 SSMLFGTIVGSLADKQGRKRACVTY  108 (454)
T ss_pred             hHHHHHHHHHHHHhhhccccceeee
Confidence            3344445678899999999875544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=89.40  E-value=4.5  Score=38.15  Aligned_cols=19  Identities=21%  Similarity=0.565  Sum_probs=8.6

Q ss_pred             hHHHHHHHHHHHHHHhhcc
Q 042372          346 IIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       346 ~~~~~~~~~~~~~~~~~l~  364 (402)
                      |.+..++.+++++....++
T Consensus       178 F~~a~~v~l~~i~~~~~l~  196 (437)
T TIGR00939       178 FGTPCVVQLICIVCYLLLP  196 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            4444444445555444443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=89.30  E-value=1.5  Score=37.60  Aligned_cols=67  Identities=18%  Similarity=0.212  Sum_probs=46.2

Q ss_pred             HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHHH
Q 042372            7 VIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAALT   86 (402)
Q Consensus         7 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~~   86 (402)
                      ....+.+| ++||++.++.-...+++..+-..+...+.                       +...-+..+++...+.++.
T Consensus       119 vt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f-----------------------~~~~~~fll~la~~~~~v~  174 (250)
T PF06813_consen  119 VTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF-----------------------GDDPSSFLLFLAVLPAVVC  174 (250)
T ss_pred             HHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc-----------------------CCChHHHHHHHHHHHHHHH
Confidence            34556776 58999999999999998887776666654                       2233556666666677766


Q ss_pred             HHHHhhcCCCc
Q 042372           87 YYWRMKMPETA   97 (402)
Q Consensus        87 ~~~~~~lpesp   97 (402)
                      ++..++++.-|
T Consensus       175 l~~~~~vr~~~  185 (250)
T PF06813_consen  175 LVAMFFVRPVP  185 (250)
T ss_pred             HHHhhheeccC
Confidence            66666665443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=87.72  E-value=0.93  Score=41.75  Aligned_cols=66  Identities=14%  Similarity=0.180  Sum_probs=50.9

Q ss_pred             chhHHhhhhcccc---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            4 LSAVIMSEYANKR---TRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         4 ~~~~~i~e~~~~~---~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      ....+.+|.++++   +|.+...++..+.++|..++..+..++.                       ++.||.+.|.+.+
T Consensus        53 ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~-----------------------~~~~~~~~f~i~~  109 (372)
T PF00854_consen   53 NISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQ-----------------------QNYGWFLGFGIPA  109 (372)
T ss_dssp             HHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHH-----------------------HCS-HHHHHHHHH
T ss_pred             cHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhc-----------------------cccchhhhhhHHH
Confidence            4567778888765   4666777888999999999998888886                       7789999999988


Q ss_pred             HHHHHHHHHHhh
Q 042372           81 VPAALTYYWRMK   92 (402)
Q Consensus        81 i~~~~~~~~~~~   92 (402)
                      +..+++++..+.
T Consensus       110 ~~~~~~~~~f~~  121 (372)
T PF00854_consen  110 IGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            877776665443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=86.28  E-value=20  Score=30.57  Aligned_cols=29  Identities=17%  Similarity=0.056  Sum_probs=17.4

Q ss_pred             HhhhcccchhhhhhccccchhHHHHHHHH
Q 042372          210 LFATVPGYWFTVFLIDRIGRFIIQLGGFL  238 (402)
Q Consensus       210 ~i~~~~g~~~~g~l~dr~grr~~~~~~~~  238 (402)
                      .++..+..+.+-+++.|+.-|++.+++..
T Consensus       250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi  278 (294)
T KOG2881|consen  250 ALCTGLAVIGGKYLASKISVRTVTLIGGI  278 (294)
T ss_pred             HHHHHHHHhhhHHHhhhheeEEEEEecch
Confidence            33444444445567788887777776643

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=83.63  E-value=47  Score=32.64  Aligned_cols=38  Identities=11%  Similarity=0.068  Sum_probs=32.0

Q ss_pred             cccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 042372          301 AELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKG  338 (402)
Q Consensus       301 ~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  338 (402)
                      -+-+|++.|+.+.++......+|..++..+........
T Consensus       484 Y~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t  521 (571)
T KOG1237|consen  484 YSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST  521 (571)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35679999999999999999999999998887665544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=81.50  E-value=36  Score=29.72  Aligned_cols=99  Identities=13%  Similarity=0.013  Sum_probs=48.7

Q ss_pred             HHHHHHhhhcccchhhhhhccccchh--HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH
Q 042372          205 MFLVALFATVPGYWFTVFLIDRIGRF--IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG  282 (402)
Q Consensus       205 ~~~~~~i~~~~g~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (402)
                      ++....++.++|+-+..++..|-..|  ..+.+.+++.++...+...... ..+. ++           +.. .-.+.++
T Consensus       287 iFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-vsP~-ke-----------s~~-~s~i~F~  352 (454)
T KOG4332|consen  287 IFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-VSPS-KE-----------SPS-ESLIGFC  352 (454)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-cCCC-cC-----------Cch-HHHHHHH
Confidence            56666777787777776666554332  4455555554444433333322 2111 11           111 1122222


Q ss_pred             HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHH
Q 042372          283 LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA  318 (402)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  318 (402)
                      .+-.. ..-..|...-+=....|.+.|++.+.+...
T Consensus       353 ~~E~c-vGlfwPSimkmRsqyIPEearstimNfFRv  387 (454)
T KOG4332|consen  353 LFEAC-VGLFWPSIMKMRSQYIPEEARSTIMNFFRV  387 (454)
T ss_pred             HHHHH-HhhcchHHHHHHHhhCCHHHHhhhhhheec
Confidence            22222 223345555556778899999876555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	402
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.92
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.86
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.81
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.76
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.73
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.65
2xut_A	524	Proton/peptide symporter family protein; transport	99.59
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.59
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.57
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.48
2xut_A	524	Proton/peptide symporter family protein; transport	99.43
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.24
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.86

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=5e-33  Score=264.34  Aligned_cols=331  Identities=17%  Similarity=0.179  Sum_probs=232.3

Q ss_pred             CCchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhH
Q 042372            2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV   81 (402)
Q Consensus         2 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i   81 (402)
                      ++++++|++|++|+++|++..++.+.+..+|.++++.++..+.......               ......||+++.+..+
T Consensus       144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~  208 (491)
T 4gc0_A          144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS---------------WLNTDGWRYMFASECI  208 (491)
T ss_dssp             HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT---------------TTTTTHHHHHHHTTHH
T ss_pred             HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc---------------cccchhhHHHhhhhhh
Confidence            3567899999999999999999999999999999999988876432211               2245689999999999


Q ss_pred             HHHHHHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        82 ~~~~~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      +.++.++..+++||||+|+.. +++.+++.+.+++..+.+..++.......  .....++........+.++..+.....
T Consensus       209 ~~~~~~~~~~~~peSp~~L~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (491)
T 4gc0_A          209 PALLFLMLLYTVPESPRWLMS-RGKQEQAEGILRKIMGNTLATQAVQEIKH--SLDHGRKTGGRLLMFGVGVIVIGVMLS  285 (491)
T ss_dssp             HHHHHHHHGGGSCCCHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTTHHHHSCCTHHHHHHHHH
T ss_pred             hhhhhhhhhhcCCCChHHHHH-cCchhHHHHhHHHhcCCchhHHHHHHHHH--HHHhhhhhhhHHHHhcccHHHHHHHHH
Confidence            999999999999999999865 56667776666665543322111100000  000000000111111222344455555


Q ss_pred             HHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS  241 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  241 (402)
                      .+.+..+.+....|.+.+.+..+.+......            ...+..+..+++.++++++.||+|||+.++.+..+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~  353 (491)
T 4gc0_A          286 IFQQFVGINVVLYYAPEVFKTLGASTDIALL------------QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA  353 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHhcchHHHHhcCCCccchhh------------HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHH
Confidence            5566667778888888888887776654332            4555667777888899999999999999999988888


Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHH
Q 042372          242 ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK  321 (402)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  321 (402)
                      ++++.+.......                 ......+....+...++..+..++.+.+.+|++|++.|+++.|+.+.+++
T Consensus       354 ~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~  416 (491)
T 4gc0_A          354 IGMFSLGTAFYTQ-----------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW  416 (491)
T ss_dssp             HHHHHHHHHHHTT-----------------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-----------------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence            8777666543321                 12222333333344444667777888999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHhhhcC----CCchhhhHHHHHHHHHHHHHHh-hcccCCCCCcccccchhh
Q 042372          322 AGAIVGAFGVQYYTQKGD----KQIKQSIIALAVVNFLGFLCSF-MVPETNGLSLEELSGEDK  379 (402)
Q Consensus       322 ~g~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~l~et~~~~~~~~~~~~~  379 (402)
                      +++++++.+++.+.+...    .++...|++++++++++.++.+ ++||||++++||+++.-+
T Consensus       417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~  479 (491)
T 4gc0_A          417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE  479 (491)
T ss_dssp             HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence            999999988877654210    0455678888888888887776 569999999999887643

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.92  E-value=1.3e-24  Score=203.89  Aligned_cols=290  Identities=15%  Similarity=0.155  Sum_probs=195.5

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcc-hhHHHHHhhH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYL-WRIVLMFGAV   81 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Wr~~f~~~~i   81 (402)
                      +...+++.|++|+++|++++++.+.+..+|.++++.+++.+.                       ...+ ||+.|++.++
T Consensus       138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~g~w~~~f~~~~~  194 (451)
T 1pw4_A          138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-----------------------AWFNDWHAALYMPAF  194 (451)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH-----------------------HHTCCSTTCTHHHHH
T ss_pred             chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhccHHHHHHHHHH
Confidence            566789999999999999999999999999999999998876                       4456 9999999887


Q ss_pred             HHHHH-HHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHH
Q 042372           82 PAALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTS  160 (402)
Q Consensus        82 ~~~~~-~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (402)
                      +.++. ++..+++||+|+...  ..+.++..        .+.++   +.++.++++....+.......++  +.++...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  259 (451)
T 1pw4_A          195 CAILVALFAFAMMRDTPQSCG--LPPIEEYK--------NDYPD---DYNEKAEQELTAKQIFMQYVLPN--KLLWYIAI  259 (451)
T ss_dssp             HHHHHHHHHHHHCCCSSTTTC--CCSCTTTC--------CC----------------CCTHHHHHHTSSC--HHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCHhhcC--CCChhhhc--------ccccc---cchhhhhcccccccchHHHHHcC--HHHHHHHH
Confidence            77654 455677899887521  11111000        00000   00000001111111111222221  24555555


Q ss_pred             HHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc--chhHHHHHHH
Q 042372          161 TWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRFIIQLGGF  237 (402)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~  237 (402)
                      ..++.....+....+.|.++++ .|++..+.+.            ......++.+++.++.+++.||+  |||+.+.++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~  327 (451)
T 1pw4_A          260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW------------AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  327 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            6666666777888899999988 7888876544            67777888899999999999999  9999887776


Q ss_pred             HHHH-HHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH
Q 042372          238 LLMS-ICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS  316 (402)
Q Consensus       238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~  316 (402)
                      .+.. ++.+++..    .. .              .+. ..........+++..+..+....+..|.+|++.|+++.|+.
T Consensus       328 ~~~~~~~~~~~~~----~~-~--------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  387 (451)
T 1pw4_A          328 MTLVTIATIVYWM----NP-A--------------GNP-TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT  387 (451)
T ss_dssp             HHHHHHHHHHTTS----CC-T--------------TCH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hc-c--------------cCH-HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence            5544 33222211    11 0              122 22222222333333444455667889999999999999999


Q ss_pred             HHHHHH-HHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhcc
Q 042372          317 AAAGKA-GAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMVP  364 (402)
Q Consensus       317 ~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (402)
                      +....+ |..++|.+.+.+.+..  ++...|++.+++.+++.++.++++
T Consensus       388 ~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          388 GLFGYLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 9999999999999987  888999998888888877776653

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.86  E-value=4.2e-20  Score=172.62  Aligned_cols=284  Identities=12%  Similarity=-0.006  Sum_probs=178.4

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccCcccccccccccCCC------CCcchhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFS-GIFLHVYNAPAFNRNHVLSAQPQ------GDYLWRIV   75 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~Wr~~   75 (402)
                      +...++++|++|+++|++++++.+.+..+|.++++.+++.+. ...... ++...   ...+.+..      ...+||+.
T Consensus       136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~w~~~  211 (438)
T 3o7q_A          136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ-SQDVL---DKMSPEQLSAYKHSLVLSVQTP  211 (438)
T ss_dssp             HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC-CHHHH---HHSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccc---ccCCcchhhhhhhhhhhhHHHH
Confidence            467789999999999999999999999999999999998886 211000 00000   00000000      00129999


Q ss_pred             HHHhhHHHHHHHHHHhh--cCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhH
Q 042372           76 LMFGAVPAALTYYWRMK--MPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGL  153 (402)
Q Consensus        76 f~~~~i~~~~~~~~~~~--lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (402)
                      |++.++..++..+..++  .||+++.    ++++++                      .++.+...++.+++       +
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~----------------------~~~~~~~~~~~~~~-------~  258 (438)
T 3o7q_A          212 YMIIVAIVLLVALLIMLTKFPALQSD----NHSDAK----------------------QGSFSASLSRLARI-------R  258 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCCTTT----CCCCSS----------------------TTSHHHHHHHHTTC-------S
T ss_pred             HHHHHHHHHHHHHHHHHHcCCccccc----cccccc----------------------ccchhhhHHHHHhC-------h
Confidence            98766665554333333  4665432    000000                      00000111111111       1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhh-hhhc-CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDI-YPAT-GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI  231 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~  231 (402)
                      .++......++.....+....+.|.+ +++. |++..+.+.            ......++.+++.++.++++||+|||+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~  326 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAAN------------YLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            33344444455555666777788888 7774 888776544            667778888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372          232 IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST  311 (402)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  311 (402)
                      .+..+.++..++.+++...                     ..... .... ...+++.....+..+.+..|.+|++ |+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~  382 (438)
T 3o7q_A          327 VLAAYALIAMALCLISAFA---------------------GGHVG-LIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKY  382 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---------------------CHHHH-HHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHc---------------------CCcHH-HHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence            9998887777666555442                     22222 2222 2233334445567788889999977 888


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhhcCCC-chhhhHHHHHHHHHHHHHHhh
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-IKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      +.++.. .+.+++.++|.+.+.+.+..  + ++..|++.+++.++..++.++
T Consensus       383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~  431 (438)
T 3o7q_A          383 GSSFIV-MTIIGGGIVTPVMGFVSDAA--GNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_dssp             HHHHHH-HTTHHHHHHHHHHHHHHHHH--TSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             hhhHHH-HHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHH
Confidence            888877 67799999999999999987  5 888888766655554444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.81  E-value=2.2e-19  Score=170.27  Aligned_cols=303  Identities=8%  Similarity=-0.022  Sum_probs=168.8

Q ss_pred             CchhHHhhhhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhh
Q 042372            3 PLSAVIMSEYANKRT--RGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA   80 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~--rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~   80 (402)
                      |...++++|++|+++  |+...++++.+..+|.++++.+++.+.                       +..+||+.|++.+
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~g~~~~f~~~~  183 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ-----------------------EAAGYHVAFSLAA  183 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHSCHHHHHHHHH
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH-----------------------hhhhHHHHHHHHH
Confidence            567789999999988  777888899999999999999999987                       5578999999987


Q ss_pred             HHHHHHHHHHhhc-CCCc----hhHhhhcCCHHHHHHHHHH---------------hhcccccccc--------------
Q 042372           81 VPAALTYYWRMKM-PETA----RYTALVEGNQKKAAVDMAK---------------VLDTDINVAT--------------  126 (402)
Q Consensus        81 i~~~~~~~~~~~l-pesp----~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--------------  126 (402)
                      +..++.++..++. |+..    +.. ..+.++++..+....               ....+.+.+.              
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (491)
T 4aps_A          184 IGMFIGLLVYYFGGKKTLDPHYLRP-TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPV  262 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCSCC-SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccccccccCC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHH
Confidence            7666554443322 2110    000 001122222221111               0000000000              


Q ss_pred             ----CCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHH
Q 042372          127 ----SAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRI  201 (402)
Q Consensus       127 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~  201 (402)
                          ...++   ++       ..+..+++....+......+.....+.....+.+.+.++ .+.+....+.         
T Consensus       263 ~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  323 (491)
T 4aps_A          263 FYFAWMISS---VK-------VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSW---------  323 (491)
T ss_dssp             HHHHHHC----------------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGG---------
T ss_pred             HHHHHHhhc---cc-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHH---------
Confidence                00000   00       000011111112222223333333344444555666655 4444333222         


Q ss_pred             HHHHHHHHHhhhcccchhhhhhccccchhHHHH-----HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHH
Q 042372          202 SKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL-----GGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAW  276 (402)
Q Consensus       202 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (402)
                         ......++.+++.++.+++.||+|||+...     .+..+.+++.+++..........+            ..+.+.
T Consensus       324 ---~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  388 (491)
T 4aps_A          324 ---FQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG------------KVSPLW  388 (491)
T ss_dssp             ---GTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT------------TCCTHH
T ss_pred             ---HhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------CccHHH
Confidence               444555666667778899999999986544     555555555544444321111000            012222


Q ss_pred             HHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHH
Q 042372          277 FMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLG  356 (402)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (402)
                       ..+..+..+.+.....+..+.++.|.+|++.|+++.|+.+....+|.++++.+.+.+.+.   ++...|.+.+++.+++
T Consensus       389 -~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~  464 (491)
T 4aps_A          389 -LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK---SEVAYFSYFGLGSVVL  464 (491)
T ss_dssp             -HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS---STTHHHHHTHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHH
Confidence             223333333334444567788999999999999999999999999999999998887765   6667788888887777


Q ss_pred             HHHHhhc-ccCC
Q 042372          357 FLCSFMV-PETN  367 (402)
Q Consensus       357 ~~~~~~l-~et~  367 (402)
                      .++.+++ ++.+
T Consensus       465 ~~~~~~~~~~~~  476 (491)
T 4aps_A          465 GIVLVFLSKRIQ  476 (491)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHHHHHHH
Confidence            7766655 5544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.76  E-value=3.1e-19  Score=163.24  Aligned_cols=252  Identities=15%  Similarity=0.107  Sum_probs=163.3

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|++|+++|++++++.+.+..+|.++++.+++.+.                       +..+||+.|++.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~~~~~~~~~~~~  163 (375)
T 2gfp_A          107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-----------------------TMWNWRACYLFLLVL  163 (375)
T ss_dssp             HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-----------------------CHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------------------HhccHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999886                       556899999988877


Q ss_pred             HHHHHH-HHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~~~~-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++..+ ..+++||+|+.  . +++                          ++.+++.++.++++       .++.....
T Consensus       164 ~~~~~~~~~~~~~~~~~~--~-~~~--------------------------~~~~~~~~~~~~~~-------~~~~~~~~  207 (375)
T 2gfp_A          164 CAGVTFSMARWMPETRPV--D-APR--------------------------TRLLTSYKTLFGNS-------GFNCYLLM  207 (375)
T ss_dssp             HHHHHCCCCCSSCCCSTT--T-CCC--------------------------CCTTTCSTHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHCcccCCC--C-ccc--------------------------ccHHHHHHHHhcCc-------chHHHHHH
Confidence            766554 45567887643  1 110                          00011112222221       33344444


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH-
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL-  239 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~-  239 (402)
                      .+......+....+.|.++++ .|.++.+.+.            ......++.+++.++.+++.||++++.  ..+... 
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~  273 (375)
T 2gfp_A          208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSI------------LFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICC  273 (375)
T ss_dssp             HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHH------------HHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            455555667777888888877 6776664443            666777888888899999999998732  222222 


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      ...+...+.....  .                ..............+++.....+....+..|.+| +.|+++.|+.+..
T Consensus       274 ~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~  334 (375)
T 2gfp_A          274 LLAGLLMWIPDWF--G----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL  334 (375)
T ss_dssp             HHTSSSSSHHHHH--H----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh--c----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence            1111111111100  0                0111222222222223333345667778899998 8899999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHH
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIA  348 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~  348 (402)
                      ..+|..++|.+.+.+.+..  ++...+.+
T Consensus       335 ~~~g~~~~~~~~g~l~~~~--~~~~~~~~  361 (375)
T 2gfp_A          335 QNIGSGVLASLSAMLPQTG--QGSLGLLM  361 (375)
T ss_dssp             HHHHHHCCSTTCTHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCC--cccHHHHH
Confidence            9999999999998887754  55555544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.73  E-value=3.4e-18  Score=158.59  Aligned_cols=279  Identities=13%  Similarity=0.027  Sum_probs=156.7

Q ss_pred             Hhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHHHHH
Q 042372            8 IMSEYANK--RTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVPAAL   85 (402)
Q Consensus         8 ~i~e~~~~--~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~~~~   85 (402)
                      .+.++.++  ++|+...+....+..+|.++++.+++.+.                       + .+||+.|++.++++++
T Consensus       124 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~-----------------------~-~~~~~~f~~~~~~~~~  179 (417)
T 2cfq_A          124 AVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF-----------------------T-INNQFVFWLGSGCALI  179 (417)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH-----------------------H-HCSHHHHTTTTTTTTT
T ss_pred             HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH-----------------------H-hchhHHHHHHHHHHHH
Confidence            34445443  35566677777778889999999998886                       2 4699999988777655


Q ss_pred             HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHHHHHH
Q 042372           86 TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTSTWFLL  165 (402)
Q Consensus        86 ~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (402)
                      .++..++.+|+|+.  . .+.++                 .++.++.+...+..++.++++       .++......+..
T Consensus       180 ~~~~~~~~~~~~~~--~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  232 (417)
T 2cfq_A          180 LAVLLFFAKTDAPS--S-ATVAN-----------------AVGANHSAFSLKLALELFRQP-------KLWFLSLYVIGV  232 (417)
T ss_dssp             HHHHSCSSCCCCSC--S-SCSSS-----------------SSSSCCCCCCHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHcCccccc--c-ccccc-----------------ccccccccccHHHHHHHhcCC-------chhhHHHHHHHH
Confidence            55544444443311  0 00000                 000000000001111122211       122222222222


Q ss_pred             HHHHHHHHHhHhhhhhhc-CCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHH
Q 042372          166 DIAFYTINLTQKDIYPAT-GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICM  244 (402)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  244 (402)
                      ...++....+.|.++.+. +.......         ..+....+..++.+++.++.++++||+|||+.+..+..+.++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~  303 (417)
T 2cfq_A          233 SCTYDVFDQQFANFFTSFFATGEQGTR---------VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI  303 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSHHHHTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCChh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence            223333334456555442 21110000         11224555666777788899999999999999887776665554


Q ss_pred             HHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHH-HHHHHHH
Q 042372          245 AILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS-AAAGKAG  323 (402)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g  323 (402)
                      +.+...                     .+.+.......+. ........+..+.++.|.+|++.|+++.++. +...++|
T Consensus       304 ~~~~~~---------------------~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg  361 (417)
T 2cfq_A          304 IGSSFA---------------------TSALEVVILKTLH-MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA  361 (417)
T ss_dssp             HHHTTC---------------------CSHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHHHh---------------------ccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHH
Confidence            333221                     1111222111111 1111111223456889999999999999984 7788899


Q ss_pred             HHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCCCCC
Q 042372          324 AIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETNGLS  370 (402)
Q Consensus       324 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~~~~  370 (402)
                      ++++|.+.+.+.+..  ++...|.+.+++.+++.++.++. ||+++.+
T Consensus       362 ~~~gp~l~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          362 MIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHTHHHHTHHHHS--HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHhhhhHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            999999999988866  77788888888888887766654 6654433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.65  E-value=2.7e-15  Score=140.42  Aligned_cols=185  Identities=12%  Similarity=-0.005  Sum_probs=137.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchh
Q 042372          151 HGLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRF  230 (402)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr  230 (402)
                      +++.++......+......+....+.|.+.+++ .+..+.+.            ......++..++.++.|+++||+|||
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~g~r   92 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGF------------ALSGISIAYGFSKFIMGSVSDRSNPR   92 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHH------------HHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHH------------HHHHHHHHHHHHHHhHHHHHHhcCch
Confidence            334555666666666666666777788888888 88776555            77778888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhh
Q 042372          231 IIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRS  310 (402)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  310 (402)
                      +.++++.++.+++.++..+.... .                .+.+.+.+. .++.+.+.....+...+++.|.+|++.|+
T Consensus        93 ~~l~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~r~  154 (451)
T 1pw4_A           93 VFLPAGLILAAAVMLFMGFVPWA-T----------------SSIAVMFVL-LFLCGWFQGMGWPPCGRTMVHWWSQKERG  154 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHH-H----------------SSSSHHHHH-HHHHHHHHHHTHHHHHHHHHTTCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhc-c----------------ccHHHHHHH-HHHHHHHhhhccchHHHHHHHHCCchhhh
Confidence            99999998888888777662100 0                122233332 33333334444566778899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCC-chhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372          311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-IKQSIIALAVVNFLGFLCSF-MVPETNG  368 (402)
Q Consensus       311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~l~et~~  368 (402)
                      .+.++.+....+|.+++|.+.+.+.+..  + |+..|++.+++.++..++.+ ++||++.
T Consensus       155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          155 GIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            9999999999999999999999887776  7 99999999888877666554 4577544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.59  E-value=1.1e-15  Score=146.07  Aligned_cols=82  Identities=7%  Similarity=-0.042  Sum_probs=54.1

Q ss_pred             hcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCc---------hhhhHHHHHHHHHHHHH
Q 042372          289 NFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQI---------KQSIIALAVVNFLGFLC  359 (402)
Q Consensus       289 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  359 (402)
                      .....+..+.+..|..|++.|+++.|+.++...+|++++|.+.+.+.+..+.+|         ...|++.+++.+++.++
T Consensus       419 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (524)
T 2xut_A          419 EVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIV  498 (524)
T ss_dssp             HHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHH
Confidence            333455667788999999999999999999999999999999998876320011         22366667777776666


Q ss_pred             Hhhc-ccCCCCC
Q 042372          360 SFMV-PETNGLS  370 (402)
Q Consensus       360 ~~~l-~et~~~~  370 (402)
                      .+++ +++++++
T Consensus       499 ~~~~~~~~~~~~  510 (524)
T 2xut_A          499 FALYARSYQMQD  510 (524)
T ss_dssp             HC----------
T ss_pred             HHHHHHHhccch
Confidence            5544 6554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.59  E-value=2.3e-14  Score=133.54  Aligned_cols=184  Identities=11%  Similarity=0.039  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372          153 LHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII  232 (402)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  232 (402)
                      +.++.+....+.............|.+.+++|.+..+.+.            ......++..++.++.|+++||+|||+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~dr~g~r~~   93 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAG   93 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHH------------HHHHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhcchHH
Confidence            3455555566666666667777788888889999887655            7788888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC  312 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  312 (402)
                      ++++.++.+++.++.......                  .+. ...++..+..+.+.....+...+++.|.+|++.|+.+
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~------------------~~~-~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  154 (438)
T 3o7q_A           94 IITGLFLYALGAALFWPAAEI------------------MNY-TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR  154 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT------------------TCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccc------------------ccH-HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence            999998888887776322110                  222 3333333344444444555677888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHh-hhcCCC------------------------chhhhHHHHHHHHHHHHHHhhc--cc
Q 042372          313 HGISAAAGKAGAIVGAFGVQYYT-QKGDKQ------------------------IKQSIIALAVVNFLGFLCSFMV--PE  365 (402)
Q Consensus       313 ~~~~~~~~~~g~~i~~~~~~~~~-~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~l--~e  365 (402)
                      .++.+....+|..+++.+.+.+. +..+ .                        |+..|++.+++.++..++.++.  ||
T Consensus       155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~  233 (438)
T 3o7q_A          155 LNLAQTFNSFGAIIAVVFGQSLILSNVP-HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA  233 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHTSSC-CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999998887 4431 2                        8888887777766665555543  55


Q ss_pred             CCC
Q 042372          366 TNG  368 (402)
Q Consensus       366 t~~  368 (402)
                      +++
T Consensus       234 ~~~  236 (438)
T 3o7q_A          234 LQS  236 (438)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.57  E-value=2.7e-14  Score=135.18  Aligned_cols=174  Identities=14%  Similarity=0.055  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhh------cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccc-
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPA------TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR-  226 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr-  226 (402)
                      .++......+.....++....+++.++.+      +|.+..+.+.            ......++..++.++.|+++|| 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~   81 (491)
T 4aps_A           14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAAS------------IMAIYASMVYLSGTIGGFVADRI   81 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcc
Confidence            45555566666666777777777777665      7888876555            7777888888999999999999 


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch
Q 042372          227 IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA  306 (402)
Q Consensus       227 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  306 (402)
                      +|||++++.+.++.+++.++....                     .+.+.+. +..+..+.+.....+...+++.|.+|+
T Consensus        82 ~g~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~  139 (491)
T 4aps_A           82 IGARPAVFWGGVLIMLGHIVLALP---------------------FGASALF-GSIILIIIGTGFLKPNVSTLVGTLYDE  139 (491)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHSC---------------------CSTTHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHH-HHHHHHHHHHHhccchHHHHHHHHcCc
Confidence            899999999988877777665542                     1222222 222333333344456677888999999


Q ss_pred             hh--hhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          307 RL--RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       307 ~~--r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +.  |+.+.++.+....+|..++|.+.+.+.+..  +|+..|++.++..+++.+..++.
T Consensus       140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA--GYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHh
Confidence            88  778888888999999999999999998877  89999999887777776665544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.48  E-value=8e-14  Score=127.19  Aligned_cols=174  Identities=11%  Similarity=0.006  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHH
Q 042372          160 STWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL  239 (402)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  239 (402)
                      ...+.............|.+.+++|.+..+.+.            ......++..++.++.|+++||+|||+.++.+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   74 (375)
T 2gfp_A            7 LLVAVGQMAQTIYIPAIADMARDLNVREGAVQS------------VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI   74 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHH------------HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            334444445555556678888889998886555            77777888888999999999999999999999888


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHH
Q 042372          240 MSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA  319 (402)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  319 (402)
                      .+++.++....                     ++. .......+..+.+.....+....++.|.+|++.|+++.++.+..
T Consensus        75 ~~~~~~~~~~~---------------------~~~-~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (375)
T 2gfp_A           75 FMLATLVAVTT---------------------SSL-TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG  132 (375)
T ss_dssp             HHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHh---------------------ccH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            88887776654                     222 22333333333334444556677889999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCCC
Q 042372          320 GKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNGL  369 (402)
Q Consensus       320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~~  369 (402)
                      ..+|..++|.+.+.+.+..  +|+..|++.+++.++..+..+ ++||++++
T Consensus       133 ~~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          133 ILVSPLLAPLIGGLLDTMW--NWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHHHHHHSSCHH--HHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHhhHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            9999999999999988776  899999988888777666444 45776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.43  E-value=1.5e-12  Score=124.23  Aligned_cols=174  Identities=10%  Similarity=-0.008  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhh-hcC------CchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc
Q 042372          155 LLGTTSTWFLLDIAFYTINLTQKDIYP-ATG------IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI  227 (402)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~  227 (402)
                      ++.+....++....++....+++.++. ++|      ++..+.+.            ......++.+++.++.|+++||+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~   81 (524)
T 2xut_A           14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKD------------VFHSFVIGVYFFPLLGGWIADRF   81 (524)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHH------------HHHHHHHHHHHTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555666777777777665 477      78776554            67777888888999999999999


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch
Q 042372          228 -GRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA  306 (402)
Q Consensus       228 -grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  306 (402)
                       |||+.+.++.++.+++.++.....                    .+. ....+..+..+.+.....+...+++.|.+|+
T Consensus        82 ~g~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  140 (524)
T 2xut_A           82 FGKYNTILWLSLIYCVGHAFLAIFE--------------------HSV-QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ  140 (524)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHHTS--------------------SCH-HHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHhc--------------------ccH-HHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence             999999998888877777666531                    022 2233333344444455566778889999999


Q ss_pred             hhhhhhHHH---HHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          307 RLRSTCHGI---SAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       307 ~~r~~~~~~---~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +.|+...+.   .+....+|..++|.+.+.+.+..  +|+..|++.+++.+++.+..++.
T Consensus       141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--GAAVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHHHHHh
Confidence            999776665   88889999999999999888766  89999998888777766655543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.24  E-value=3.4e-11  Score=113.86  Aligned_cols=161  Identities=16%  Similarity=0.059  Sum_probs=106.3

Q ss_pred             HHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHH
Q 042372          203 KAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYG  282 (402)
Q Consensus       203 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (402)
                      +...+...++.++|++++|+++||+|||+.++++.++..++.++.++...........   ...... -......+++..
T Consensus        58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~---~~~~~~-~a~~~~~l~~~R  133 (491)
T 4gc0_A           58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPD---NTVPVY-LAGYVPEFVIYR  133 (491)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS---SSCCGG-GGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch---hHHHHH-HhhhHHHHHHHH
Confidence            3356667788899999999999999999999999888888877766432110000000   000000 012233444445


Q ss_pred             HHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhhcCC------CchhhhHHHHHHHHHH
Q 042372          283 LTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK------QIKQSIIALAVVNFLG  356 (402)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  356 (402)
                      ++.+.+..+..+...++++|..|++.|+...++.+....+|..+++.+..........      .|+..+.+..+..++.
T Consensus       134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (491)
T 4gc0_A          134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF  213 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence            5555555556667788999999999999999999999888888888776665543211      4556666666666666


Q ss_pred             HHHHhhcccCC
Q 042372          357 FLCSFMVPETN  367 (402)
Q Consensus       357 ~~~~~~l~et~  367 (402)
                      .+..+++||+.
T Consensus       214 ~~~~~~~peSp  224 (491)
T 4gc0_A          214 LMLLYTVPESP  224 (491)
T ss_dssp             HHHGGGSCCCH
T ss_pred             hhhhhcCCCCh
Confidence            66666778874

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.86  E-value=1.5e-10  Score=107.03  Aligned_cols=173  Identities=13%  Similarity=-0.076  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHH
Q 042372          158 TTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG  236 (402)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~  236 (402)
                      .....+.....+.....++|.++++ .|.++.+.+.            ......++..++.++.|+++||+|||+.++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~   79 (417)
T 2cfq_A           12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGI------------IFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHH------------HHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            3333344444455556677887765 7888887655            77777888889999999999999999999887


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCch--hhhhhhHH
Q 042372          237 FLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA--RLRSTCHG  314 (402)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~  314 (402)
                      ..+.+++...+..........              ........+.....+.......    ....+..++  +.|+...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~g  141 (417)
T 2cfq_A           80 ITGMLVMFAPFFIFIFGPLLQ--------------YNILVGSIVGGIYLGFCFNAGA----PAVEAFIEKVSRRSNFEFG  141 (417)
T ss_dssp             HHHTTSCHHHHHHHTHHHHHH--------------TTCCHHHHGGGSSTTHHHHTTH----HHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHhhhhcccchH
Confidence            665443221111100000000              0000000000000000001111    112233332  34566667


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          315 ISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       315 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      .......+|..++|.+.+++.+.   +|+..|++.++..++..+..++.
T Consensus       142 ~~~~~~~~g~~~~~~l~~~l~~~---~~~~~f~~~~~~~~~~~~~~~~~  187 (417)
T 2cfq_A          142 RARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFA  187 (417)
T ss_dssp             HHSSSTTTHHHHHHHHHHHHHHH---CSHHHHTTTTTTTTTHHHHSCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHc
Confidence            77777788899999999888774   78888887666544444443344

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	402
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.73
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.66
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.11

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7.6e-23  Score=189.23  Aligned_cols=293  Identities=15%  Similarity=0.145  Sum_probs=185.0

Q ss_pred             CchhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccccccccccCCCCCcchhHHHHHhhHH
Q 042372            3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP   82 (402)
Q Consensus         3 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~   82 (402)
                      +...+++.|++|+++|++++++.+.+..+|.++++.+++.+..                      ...+||+.|++.+++
T Consensus       135 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~----------------------~~~~w~~~~~~~~~~  192 (447)
T d1pw4a_         135 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA----------------------WFNDWHAALYMPAFC  192 (447)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH----------------------HTCCSTTCTHHHHHH
T ss_pred             hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh----------------------hhhcccccchhhhhh
Confidence            4567899999999999999999999999999999998887652                      334699999887776


Q ss_pred             HHH-HHHHHhhcCCCchhHhhhcCCHHHHHHHHHHhhccccccccCCCCCCCCCCcccccchhhHHhhhhhHHHHHHHHH
Q 042372           83 AAL-TYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDINVATSAYPAPVSPEASTYGLFSKEFVQKHGLHLLGTTST  161 (402)
Q Consensus        83 ~~~-~~~~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (402)
                      .++ .++..++++|+|+...  ....++..           ++..++..+..+++...++...+..+++  +.++.....
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  257 (447)
T d1pw4a_         193 AILVALFAFAMMRDTPQSCG--LPPIEEYK-----------NDYPDDYNEKAEQELTAKQIFMQYVLPN--KLLWYIAIA  257 (447)
T ss_dssp             HHHHHHHHHHHCCCSSTTTC--CCSCTTTC-----------CC-------------CCTHHHHHHTSSC--HHHHHHHHH
T ss_pred             HHHHHHHHHHhcccchhhcc--cchhhhhh-----------hhcccchhhccccccchhhHHHHHHHcC--chHHHHHHH
Confidence            655 4555666777775421  11111100           0000000000011111111112222221  345555555


Q ss_pred             HHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHH
Q 042372          162 WFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLM  240 (402)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  240 (402)
                      .++.....+....+.|.++.+ .+.+..+.+.            ......++.+++.++.|++.||++|++.........
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  325 (447)
T d1pw4a_         258 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSW------------AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM  325 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             hhhhhhhhhcchhhhhhhcccccccccchhhh------------hhhcchhhhhhhhhhhhhhhhhccccccccccchhH
Confidence            566666677777888888876 6777765444            667777888889999999999999876554444333


Q ss_pred             HHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhhhHHHHHHHH
Q 042372          241 SICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAG  320 (402)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  320 (402)
                      .+..........  ...              .+. ....+..+..++...+..+....+..|.+|++.|+++.|+.+.++
T Consensus       326 ~~~~~~~~~~~~--~~~--------------~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  388 (447)
T d1pw4a_         326 TLVTIATIVYWM--NPA--------------GNP-TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG  388 (447)
T ss_dssp             HHHHHHHHHTTS--CCT--------------TCH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--ccc--------------ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            333222222211  111              122 222222333333344445566778899999999999999999988


Q ss_pred             HHH-HHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc
Q 042372          321 KAG-AIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV  363 (402)
Q Consensus       321 ~~g-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  363 (402)
                      +++ .+++|.+.+.+.+..  ++...+++.+++.+++.++.+++
T Consensus       389 ~~~g~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         389 YLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHH
Confidence            875 567889999999987  88888888888887777766654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.3e-17  Score=149.64  Aligned_cols=143  Identities=15%  Similarity=0.021  Sum_probs=104.3

Q ss_pred             HHHHHHHhhhcccchhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHH
Q 042372          204 AMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGL  283 (402)
Q Consensus       204 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (402)
                      .......++..++..+.+++.||.|+|+.+.++..+.+++.+.+...                     .+.+.... ..+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~-~~~  320 (417)
T d1pv7a_         263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------------------TSALEVVI-LKT  320 (417)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC---------------------CCHHHHHH-HHH
T ss_pred             ccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc---------------------cccchhhH-HHH
Confidence            35666677788888899999999999999998887777766655542                     22222222 222


Q ss_pred             HHHHhhcCCcccceeeecccCchhhhhhhHHHHH-HHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhh
Q 042372          284 TLFFANFGPNSTTFIVPAELFPARLRSTCHGISA-AAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFM  362 (402)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (402)
                      ..+.+.....+...++..|.+|++.|+++.++.. ....+|.+++|.+.+++.+..  +++..+++.+++.++..++.++
T Consensus       321 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHH
Confidence            2233233344567778899999999999999865 456789999999999999988  8899999988888877776665


Q ss_pred             c-ccCCCCC
Q 042372          363 V-PETNGLS  370 (402)
Q Consensus       363 l-~et~~~~  370 (402)
                      + ++++..+
T Consensus       399 ~l~~~~~~~  407 (417)
T d1pv7a_         399 TLSGPGPLS  407 (417)
T ss_dssp             HSCCSSCTT
T ss_pred             hhcCCCccc
Confidence            4 5544443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=6.6e-16  Score=141.98  Aligned_cols=184  Identities=11%  Similarity=-0.015  Sum_probs=127.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhH
Q 042372          152 GLHLLGTTSTWFLLDIAFYTINLTQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFI  231 (402)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~  231 (402)
                      |..+..+++.++.............|. .++.|++..+.+.            ..+...++..++.++.|+++||+|||+
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~Dr~g~r~   90 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQGFSRGDLGF------------ALSGISIAYGFSKFIMGSVSDRSNPRV   90 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSSTTCSSCHHH------------HHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            334444443344333333334444564 4568999887666            777788888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCchhhhhh
Q 042372          232 IQLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRST  311 (402)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  311 (402)
                      .+.++.++.+++.++.+.......                 +. ...++..+..+.+.....+....++.|.+|++.|+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~  152 (447)
T d1pw4a_          91 FLPAGLILAAAVMLFMGFVPWATS-----------------SI-AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG  152 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHS-----------------SS-SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH
T ss_pred             HHHHHHHHHHHHHhhccccchhhh-----------------hH-HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccc
Confidence            999999888888777665432111                 11 223333333333334445566778899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHhhc-ccCC
Q 042372          312 CHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSFMV-PETN  367 (402)
Q Consensus       312 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~et~  367 (402)
                      +.++.+....+|..+++.+.+......+ +|+..+++.+++.++..++.+++ ++++
T Consensus       153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         153 IVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             cccccccccchhhhhhhhhhhhHhhhhh-cccccchhhhhhHHHHHHHHHHhcccch
Confidence            9999999999999999988887766554 78999988888877766665544 5443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.4e-10  Score=102.49  Aligned_cols=182  Identities=9%  Similarity=-0.110  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cCCchhhhhhhHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccchhHH
Q 042372          154 HLLGTTSTWFLLDIAFYTINLTQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII  232 (402)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  232 (402)
                      .++......+...........++|.++++ .|.+..+.+.            ..+...++..++.++.|+++||+|||+.
T Consensus         8 ~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~------------i~s~~~l~~~i~~~~~G~l~Dr~grr~~   75 (417)
T d1pv7a_           8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGI------------IFAAISLFSLLFQPLFGLLSDKLGLRKY   75 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH------------HHHHHHHHHHHTHHHHHHHHHHHTTCTH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence            34444444455444555555667776655 7999887665            7788888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccCCChhHHHHHHHHHHHHHhhcCCcccceeeecccCc--hhhhh
Q 042372          233 QLGGFLLMSICMAILGARYDSLRGKKCDAKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFP--ARLRS  310 (402)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~  310 (402)
                      ++++..+..++..+........                  .............................+..+  .+.+.
T Consensus        76 l~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (417)
T d1pv7a_          76 LLWIITGMLVMFAPFFIFIFGP------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN  137 (417)
T ss_dssp             HHHHHHHHHHTHHHHHHHTHHH------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhh------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhH
Confidence            9988877777666655532100                  000001111111111111111111111112222  23345


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhhcCCCchhhhHHHHHHHHHHHHHHh-hcccCCC
Q 042372          311 TCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIIALAVVNFLGFLCSF-MVPETNG  368 (402)
Q Consensus       311 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~et~~  368 (402)
                      ...+........+..+++.+.+.+.+.   ++...+........+..++.+ ..+++..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         138 FEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTDAPS  193 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             HHHHHHhhhhccccccccccccccccc---cccccccchhhHHHHHHHHHHHHhccccc
Confidence            556677777778888999888888776   555555555555444444444 4455443