Citrus Sinensis ID: 042376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHHHHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCLFQPQALVPNYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRYHHQQACEPGLEVGTCEPTATHQMVAATTGGRDGQGLNDWTMLDRLVTEDSSKGVTFEDPNAQHQINQLSLRGEMNFWGYEK
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccccccccccHHcccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEcEEcccccccccccccEEEEcccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHcccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHccccccccEEEcEccccccccccHHHcccccccccEEEEEccccccccccccccHHcccccEEEccccccccccccEEEEEEEEEEEEccccccccccEEEEEEEEccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHcccccccccccccccHHHcccccccccccccc
Coil and Loop (DISEMBL)
massgggvppgfrfhptdEELLHYYLRKKVSFQKFDMEVIRevdlnkmepwelqercrigstpqnewyffshkdrkyptgsrtnratnagfwkatgrdkcirnsykkigmrkTLVFyrgraphgqksdwIMHEyrledgddaqsnedGWVICRVFKKKNlfkigneqssninssssdhhhhqqfnntssnnhqshTSAFMQRENQYllrgqhpelalhystsqmlptpqyclfqpqalvpnystipstadspAAMVKQLMSntsrdcesgsenlryhhqqacepglevgtceptaTHQMVAattggrdgqglndwtMLDRLvtedsskgvtfedpnaqhQINQLSlrgemnfwgyek
Flexible Loop (DISEMBL)
massgggvppgfrfhPTDEELLHYYLRKKVSFQKFDMEVIREvdlnkmepwELQERCRIgstpqnewyffshkdrkyptgsrtnratnagfwkatgrdkcirnsykkigmrktlvfyrgraphgqksdWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHHHHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCLFQPQALVPNYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRYHHQQACEPGLEVGTCEPTATHQMVAAttggrdgqglnDWTMLDRLVTEDSskgvtfedpnaqhqinqlslrgemnfWGYEK
Low Complexity Region (SEG)
MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFKIGNEqssninssssdhhhhqqfnntssnnhqshtsAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCLFQPQALVPNYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRYHHQQACEPGLEVGTCEPTATHQMVAATTGGRDGQGLNDWTMLDRLVTEDSSKGVTFEDPNAQHQINQLSLRGEMNFWGYEK
Disordered region (IsUnstruct)
************RFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYP*****NRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLED******NEDGWVICRVFKKKNLFKI******************************************YLLRGQHPELALHYSTSQMLPTPQYCLFQPQALVPNYS******************************************LEVGTCE***THQMVAAT******QGLNDWTMLDRLV*****************************FW****
Disordered Region (DISOPRED)
*****GG**PGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLED******NE*GWVICRVFK**********************************************************************************************************************************************************GLNDWTMLDRLV****************************NFWGYE*
Disordered Region (DISEMBL)
MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFKIGNEQS****************************SAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCLFQPQALVPNYSTIPSTADSPAAMVKQLMSN*********ENLRYHHQQACEPGLEVGTCEPTATHQMVAATTGGRDGQGLNDWTMLDRLVTEDSSKGVTFEDPNAQHQINQLSLRGEMNFWGYEK
Disordered Region (DISPRO)
*******VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKN****************************************************HPELALHYSTSQMLPTPQYCL**************STA*SPA**********************************************************LNDWTMLDRLVTEDSSK**TF*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHHHHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCLFQPQALVPNYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRYHHQQACEPGLEVGTCEPTATHQMVAATTGGRDGQGLNDWTMLDRLVTEDSSKGVTFEDPNAQHQINQLSLRGEMNFWGYEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q9SV87	341	Protein BEARSKIN1 OS=Arab	yes	no	0.904	0.947	0.604	1e-119
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.809	0.947	0.516	7e-94
Q9LPI7	358	NAC domain-containing pro	no	no	0.546	0.544	0.622	6e-73
Q9MA17	371	Protein SOMBRERO OS=Arabi	no	no	0.442	0.425	0.760	9e-72
Q84WP6	365	NAC domain-containing pro	no	no	0.442	0.432	0.676	1e-68
Q5Z6B6	276	NAC domain-containing pro	no	no	0.442	0.572	0.728	6e-68
Q9M274	334	NAC domain-containing pro	no	no	0.495	0.529	0.603	1e-66
Q9FWX2	395	NAC domain-containing pro	no	no	0.422	0.382	0.688	5e-64
Q9FLJ2	336	NAC domain-containing pro	no	no	0.411	0.437	0.603	3e-49
Q52QH4	318	NAC domain-containing pro	no	no	0.523	0.588	0.456	3e-49

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/372 (60%), Positives = 260/372 (69%), Gaps = 49/372 (13%)

Query: 2   ASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGS 61
           +SS GGVPPGFRFHPTDEELLHYYL+KK+S+QKF+MEVIREVDLNK+EPW+LQERC+IGS
Sbjct: 3   SSSNGGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGS 62

Query: 62  TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRA 121
           TPQNEWYFFSHKDRKYPTGSRTNRAT+AGFWKATGRDKCIRNSYKKIGMRKTLVFY+GRA
Sbjct: 63  TPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRA 122

Query: 122 PHGQKSDWIMHEYRLEDGDDAQSN--EDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHH 179
           PHGQK+DWIMHEYRLED DD Q+N  EDGWV+CRVF KKNLFK+ NE SS+IN  S D H
Sbjct: 123 PHGQKTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMKKNLFKVVNEGSSSIN--SLDQH 180

Query: 180 HHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCLFQPQALV 239
           +H    + S+NNH     +FM R++ Y L   H  +         L  P   L Q     
Sbjct: 181 NH----DASNNNHALQARSFMHRDSPYQLVRNHGAMTFE------LNKPDLALHQ----- 225

Query: 240 PNYSTIPSTADSPAAMVKQLMSNTSRDCES-GSENLRYHHQQACEPGLEVGTCEPTATHQ 298
                 P     P ++     S  +RD ES  SE L+Y  QQACEPGL+VGTCE  A+H 
Sbjct: 226 -----YPPIFHKPPSLGFDYSSGLARDSESAASEGLQY--QQACEPGLDVGTCETVASHN 278

Query: 299 MVAATTGGRDGQGLNDWTMLDRLVT-----EDSSKGVTFEDPNAQHQ--------INQLS 345
                      QGL +W M+DRLVT     EDSS+G+T+ED N             NQL+
Sbjct: 279 ---------HQQGLGEWAMMDRLVTCHMGNEDSSRGITYEDGNNNSSSVVQPVPATNQLT 329

Query: 346 LRGEMNFWGYEK 357
           LR EM+FWGY K
Sbjct: 330 LRSEMDFWGYSK 341

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score =  344 bits (882), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 190/368 (51%), Positives = 241/368 (65%), Gaps = 79/368 (21%)

Query: 1   MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIG 60
           M+SS GGVPPGFRFHPTDEELLHYYL+KK+S++KF+MEVI+EVDLNK+EPW+LQ+RC+IG
Sbjct: 1   MSSSNGGVPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIG 60

Query: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGR 120
           STPQNEWYFFSHKDRKYPTGSRTNRAT++GFWKATGRDKCIRNSYKKIGMRKTLVFY+GR
Sbjct: 61  STPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKKIGMRKTLVFYKGR 120

Query: 121 APHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHHH 180
           APHGQK+DWIMHEYR+ED +D    EDGWV+CRVFKKKNLFK+GN+  SNI         
Sbjct: 121 APHGQKTDWIMHEYRIEDTEDDPC-EDGWVVCRVFKKKNLFKVGNDVGSNI--------- 170

Query: 181 HQQFNNTSSNNHQSHTSAFMQRENQY----LLRGQHP-ELALHYSTSQMLPTPQYCLFQP 235
                    +N++    +F++RE+ Y    +     P E+++H          QY   QP
Sbjct: 171 ---------SNNRLEARSFIRRESPYQGISMFELNKPEEISVH----------QYP--QP 209

Query: 236 QALVPNYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRYHHQQACEP-GLEVGTCEPT 294
               P++  +    D   A++        R+ E         +QQAC+P G+EVGTC   
Sbjct: 210 PMFQPHHKPLSIGYDYSLALL-------PRESE---------YQQACQPSGVEVGTC--- 250

Query: 295 ATHQMVAATTGGRDGQGLNDWTMLD-RLVT-EDSSKGVTFED------PNAQHQINQLSL 346
                          + +++W +++  +V+ EDSS+ + FED         Q   N LSL
Sbjct: 251 ---------------KAVSEWGIVNCNMVSHEDSSRAMRFEDDGNNTSSTVQPPSNLLSL 295

Query: 347 RGEMNFWG 354
           RGE  F G
Sbjct: 296 RGENGFLG 303

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPI7|NAC12_ARATH NAC domain-containing protein 12 OS=Arabidopsis thaliana GN=NAC012 PE=2 SV=1

 Score =  274 bits (701), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/209 (62%), Positives = 156/209 (74%), Gaps = 14/209 (6%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           VPPGFRFHPT+EELLHYYLRKKV+ QK D++VIREVDLNK+EPW++QE CRIGSTPQN+W
Sbjct: 16  VPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRIGSTPQNDW 75

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I +  ++IG+RKTLVFY+GRAPHGQKS
Sbjct: 76  YFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSCVRRIGLRKTLVFYKGRAPHGQKS 135

Query: 128 DWIMHEYRLEDG------------DDAQSNEDGWVICRVFKKKNLFKIGNEQSSNINSSS 175
           DWIMHEYRL+D             D    NE+GWV+CRVF+KKN  KI +     ++S  
Sbjct: 136 DWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKKNYQKIDDCPKITLSSLP 195

Query: 176 SDHHHHQ--QFNNTSSNNHQSHTSAFMQR 202
            D    +   F+NT +     H   +M R
Sbjct: 196 DDTEEEKGPTFHNTQNVTGLDHVLLYMDR 224

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulates the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA17|SMB_ARATH Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1

 Score =  270 bits (691), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 146/163 (89%), Gaps = 5/163 (3%)

Query: 4   SGGG---VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIG 60
           +GGG   VPPGFRFHPT+EELL+YYL+KKVS++  D++VIREVDLNK+EPWEL+E+CRIG
Sbjct: 10  AGGGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRIG 69

Query: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIR-NSYKKIGMRKTLVFYRG 119
           S PQNEWYFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I  NS KKIG+RKTLVFY G
Sbjct: 70  SGPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLRKTLVFYTG 129

Query: 120 RAPHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFK 162
           RAPHGQK++WIMHEYRL+D ++ +  EDGWV+CRVFKKKN F+
Sbjct: 130 RAPHGQKTEWIMHEYRLDDSEN-EIQEDGWVVCRVFKKKNHFR 171

Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score =  260 bits (664), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 117/173 (67%), Positives = 142/173 (82%), Gaps = 15/173 (8%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           VPPGFRFHPT+EELL YYLRKKV+  + D++VIR+VDLNK+EPW++QE C+IG+TPQN+W
Sbjct: 16  VPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQNDW 75

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I ++ ++IGMRKTLVFY+GRAPHGQKS
Sbjct: 76  YFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPHGQKS 135

Query: 128 DWIMHEYRLEDG----DDA-----------QSNEDGWVICRVFKKKNLFKIGN 165
           DWIMHEYRL+D     +D             S ++GWV+CR+FKKKNL K  N
Sbjct: 136 DWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKKNLHKTLN 188

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z6B6|NAC76_ORYSJ NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2

 Score =  258 bits (658), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 118/162 (72%), Positives = 139/162 (85%), Gaps = 4/162 (2%)

Query: 1   MASSGGG--VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCR 58
           M  SGG   VPPGFRFHPTDEELL+YYLRKKV+++  D++VIRE+DLNK+EPW+L++RCR
Sbjct: 1   MHPSGGALSVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCR 60

Query: 59  IGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYK-KIGMRKTLVFY 117
           IG+ PQNEWYFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I  +   +IGMRKTLVFY
Sbjct: 61  IGTGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANACRIGMRKTLVFY 120

Query: 118 RGRAPHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKN 159
            GRAPHG+K+DWIMHEYRL D D+    EDGWV+CRVF KK+
Sbjct: 121 VGRAPHGKKTDWIMHEYRL-DQDNVDVQEDGWVVCRVFMKKS 161

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M274|NAC66_ARATH NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1

 Score =  253 bits (647), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 148/194 (76%), Gaps = 17/194 (8%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           VPPGFRFHPT+EELL YYLRKK+S  K D++VI ++DLNK+EPW++QE C+IG+TPQN+W
Sbjct: 11  VPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTTPQNDW 70

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YF+SHKD+KYPTG+RTNRAT  GFWKATGRDK I  +  +IGMRKTLVFY+GRAPHGQKS
Sbjct: 71  YFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYTNGDRIGMRKTLVFYKGRAPHGQKS 130

Query: 128 DWIMHEYRLED-------GD--------DAQSNEDGWVICRVFKKKNLFK--IGNEQSSN 170
           DWIMHEYRL++       GD        D   +++GWV+CRVFKK NL K  I +  +S+
Sbjct: 131 DWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRVFKKNNLCKNMISSSPASS 190

Query: 171 INSSSSDHHHHQQF 184
           + + S +    +Q 
Sbjct: 191 VKTPSFNEETIEQL 204

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues such as tracheary elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  244 bits (624), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 129/151 (85%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           VPPGFRFHPTDEEL+ YYLRKKV+ ++ +++ I+++DL K+EPW+LQE C+IG   Q++W
Sbjct: 7   VPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDW 66

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I   +  IGMRKTLVFY+GRAP+GQKS
Sbjct: 67  YFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQKS 126

Query: 128 DWIMHEYRLEDGDDAQSNEDGWVICRVFKKK 158
           DWIMHEYRLE  ++    E+GWV+CRVFKK+
Sbjct: 127 DWIMHEYRLETDENGTPQEEGWVVCRVFKKR 157

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 113/154 (73%), Gaps = 7/154 (4%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRFHPTDEEL+ +YL KKV    F  + I EVDLNK EPWEL    ++G   + EW
Sbjct: 16  LPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMG---EKEW 72

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFF  +DRKYPTG RTNRAT AG+WKATG+DK I      +GM+KTLVFYRGRAP GQK+
Sbjct: 73  YFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGQKT 132

Query: 128 DWIMHEYRLEDGDDA----QSNEDGWVICRVFKK 157
           +W+MHEYRLE    A    ++ ++ WVICRVF+K
Sbjct: 133 NWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQK 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 135/208 (64%), Gaps = 21/208 (10%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRFHPTDEEL+ +YL +KV+ Q   + +I EVDL K++PW+L E+   G   + EW
Sbjct: 21  LPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFG---RKEW 77

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI--RNSYKKIGMRKTLVFYRGRAPHGQ 125
           YFF+ +DRKYP GSR NRA   G+WKATG DK +  + S + +G++K LVFY G+AP G 
Sbjct: 78  YFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKAPRGV 137

Query: 126 KSDWIMHEYRLEDGDDAQSNEDG------WVICRVFKKKN---LFKIGNEQSSNINSSSS 176
           K+DWIMHEYRL D D A   + G      WV+CR++ KKN     K+  +  +++ +++ 
Sbjct: 138 KTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKNNWEKVKLEQQDVASVAAAAP 197

Query: 177 DHHHHQQ-------FNNTSSNNHQSHTS 197
            +HHHQ          +T S++ Q+H S
Sbjct: 198 RNHHHQNGEVMDAAAADTMSDSFQTHDS 225

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
224127790	368	NAC domain protein, IPR003441 [Populus t	0.932	0.904	0.664	1e-130
225459925	359	PREDICTED: protein BEARSKIN1 [Vitis vini	0.949	0.944	0.681	1e-129
357470763	354	NAC domain protein [Medicago truncatula]	0.924	0.932	0.663	1e-128
356544246	356	PREDICTED: protein BEARSKIN1-like [Glyci	0.918	0.921	0.648	1e-128
147801859	359	hypothetical protein VITISV_038241 [Viti	0.952	0.947	0.664	1e-128
356529901	359	PREDICTED: protein BEARSKIN1-like [Glyci	0.924	0.919	0.649	1e-128
255585878	366	NAC domain-containing protein, putative	0.921	0.898	0.672	1e-126
224126579	337	NAC domain protein, IPR003441 [Populus t	0.865	0.916	0.641	1e-119
15235031	341	protein BEARSKIN1 [Arabidopsis thaliana]	0.904	0.947	0.604	1e-117
297813473	342	predicted protein [Arabidopsis lyrata su	0.907	0.947	0.607	1e-117

>gi|224127790|ref|XP_002329178.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222870959|gb|EEF08090.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/390 (66%), Positives = 287/390 (73%), Gaps = 57/390 (14%)

Query: 1   MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIG 60
           MA+S GGVPPGFRFHPTDEELLHYYL+KKVSFQKFDMEVIREVDLNKMEPWELQERC+IG
Sbjct: 3   MATSSGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVIREVDLNKMEPWELQERCKIG 62

Query: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGR 120
           S PQNEWY F HKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFY GR
Sbjct: 63  SAPQNEWYLFCHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYGGR 122

Query: 121 APHGQKSDWIMHEYRLEDGDDAQSN--EDGWVICRVFKKKNLFKIGNE-QSSNINSSSSD 177
           APHGQK+DWIMHEYRLEDGDDAQ N  EDGWV+CRVFKKKNLFK+  E  ++++NSS   
Sbjct: 123 APHGQKTDWIMHEYRLEDGDDAQGNLGEDGWVVCRVFKKKNLFKVSGEGGTTSMNSSD-- 180

Query: 178 HHHHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQH-------------PELALHYSTSQM 224
               QQ +++S+N  QS T  FM R++QY LR  H              EL LHY    M
Sbjct: 181 ----QQLHSSSTN--QSRT--FMHRDSQYSLRQNHNHGNIQQPFVLSKAELELHY--PHM 230

Query: 225 LPTPQYCLFQPQALVP--------NYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRY 276
               QY LFQ Q L+P        +YS +P     P  MVKQLMS  +RDCESGSE+LRY
Sbjct: 231 AAPHQYSLFQSQTLMPPNKSLGYDHYSGLPK---EPPVMVKQLMSG-ARDCESGSESLRY 286

Query: 277 HHQQACEPGLEVGTCEPTATHQMVAATTGGRDGQGLNDWTMLDRLVT-----EDSSKGVT 331
           H   ACEPGLEV TCE  A  QMVA   G  D QGLN+W MLDR+VT     EDS+KGV 
Sbjct: 287 H---ACEPGLEVCTCE--APQQMVA---GREDHQGLNEWAMLDRIVTSHLGNEDSAKGVR 338

Query: 332 FEDPN---AQHQINQLSLRGE-MNFWGYEK 357
           F+D +   + H INQL LRGE M+FWGY K
Sbjct: 339 FDDASNAPSAHAINQLPLRGEMMDFWGYGK 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459925|ref|XP_002264688.1| PREDICTED: protein BEARSKIN1 [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/377 (68%), Positives = 283/377 (75%), Gaps = 38/377 (10%)

Query: 1   MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIG 60
           M SS GGVPPGFRFHPTDEELLHYYL+KKVS+QKFDMEVIREVDLNKMEPWELQERCRIG
Sbjct: 1   MTSSSGGVPPGFRFHPTDEELLHYYLKKKVSYQKFDMEVIREVDLNKMEPWELQERCRIG 60

Query: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGR 120
           STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNS+KKIGMRKTLVFYRGR
Sbjct: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYRGR 120

Query: 121 APHGQKSDWIMHEYRLEDGDDAQSN--EDGWVICRVFKKKNLFKIGNEQSSNINSSSSDH 178
           APHGQK+DWIMHEYRLED DD+  N  EDGWV+CRVFKKKNLFK+G E     +SS+S  
Sbjct: 121 APHGQKTDWIMHEYRLEDADDSPGNPSEDGWVVCRVFKKKNLFKLGTEGGG--SSSASMA 178

Query: 179 HHHQQFN-NTSSNNHQSHTSAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCL-FQPQ 236
              QQ N NTSS     H  +F  R+ QYL R Q   L  HYS    +PTPQY    Q Q
Sbjct: 179 GLDQQLNINTSSTT--DHPRSFTHRDTQYLPRPQ--SLPFHYS---HIPTPQYSHNLQSQ 231

Query: 237 ALVPNYSTI-----PSTADSPAAMVKQLMSNTSRDCES-GSENLRYHHQQACEPGLEVGT 290
            L+P +  I     P  +DSP  M+KQLMSN  RDCES GSE+LRY   Q CEPG+EV T
Sbjct: 232 TLLPPHKPIAYDFSPLPSDSP-VMIKQLMSN-PRDCESAGSESLRY---QPCEPGMEVNT 286

Query: 291 CEPTATH--QMVAATTGGRDGQGLNDWTMLDRLVT------EDSSKGVTFEDPNAQ--HQ 340
           CEP A H   MV     GR+ + L++W+MLDRLVT      + SSKGV FED N     Q
Sbjct: 287 CEPGAHHHQHMVGP---GRE-ESLSEWSMLDRLVTSHLSHEDSSSKGVRFEDGNGSSVQQ 342

Query: 341 INQLSLRGEMNFWGYEK 357
           +NQLSLRGEM+FWGY K
Sbjct: 343 MNQLSLRGEMDFWGYGK 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470763|ref|XP_003605666.1| NAC domain protein [Medicago truncatula] gi|355506721|gb|AES87863.1| NAC domain protein [Medicago truncatula]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/380 (66%), Positives = 283/380 (74%), Gaps = 50/380 (13%)

Query: 1   MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIG 60
           M+SS GGVPPGFRFHPTDEELLHYYL+KKVSFQKFDM+VIREVDLNKMEPW+LQE+C+IG
Sbjct: 1   MSSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQEKCKIG 60

Query: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGR 120
           STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN+YKKIGMRKTLVFY+GR
Sbjct: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTYKKIGMRKTLVFYKGR 120

Query: 121 APHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHHH 180
           APHGQK+DWIMHEYRLEDG+D  +NEDGWV+CRVFKKKNLFKIG+E         S H+ 
Sbjct: 121 APHGQKTDWIMHEYRLEDGNDP-TNEDGWVVCRVFKKKNLFKIGSE-------GGSTHNQ 172

Query: 181 HQQFNNTSSNNHQSHTSAFMQRENQYL------------LRG---QHPELALHYSTSQML 225
            QQ NN SS N +S    FMQRENQYL            L G   + PEL+LHY   Q L
Sbjct: 173 DQQMNNISSTNQRS----FMQRENQYLLHQQQHQNHHRNLSGFELEKPELSLHY---QHL 225

Query: 226 PTPQYCLF----QPQALVPNYS---TIPSTADSPAAMVKQLMSNTSRDCESGSENLRYHH 278
              QY LF    QPQ L  N+      P   + P  +VKQLM+N  RDCESGS+ LRY  
Sbjct: 226 QNSQYSLFHSQPQPQPLQANFDYSYASPLQTEQP-IIVKQLMTN-PRDCESGSDGLRY-- 281

Query: 279 QQACEPGLEVGTCEPTATHQMVAATTGGRDGQGLNDWTMLDRLVTEDSSKGVT-FEDPNA 337
            Q  E G+EVG+CEP     +      GR G+G+N+W MLDRLV EDS+K  T FED N 
Sbjct: 282 -QVSESGIEVGSCEPPQEMGV------GRSGEGMNEWGMLDRLVNEDSTKEATRFEDANP 334

Query: 338 QHQINQLSLRGEMNFWGYEK 357
            +QINQLSLRGEM+FWGY K
Sbjct: 335 -NQINQLSLRGEMDFWGYGK 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544246|ref|XP_003540565.1| PREDICTED: protein BEARSKIN1-like [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/381 (64%), Positives = 278/381 (72%), Gaps = 53/381 (13%)

Query: 2   ASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGS 61
           +S+ GGVPPGFRFHPTDEELLHYYL+KK+SFQKFDM+VIREVDLNKMEPW+LQERCRIGS
Sbjct: 3   SSTNGGVPPGFRFHPTDEELLHYYLKKKLSFQKFDMDVIREVDLNKMEPWDLQERCRIGS 62

Query: 62  TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRA 121
           TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFY+GRA
Sbjct: 63  TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRA 122

Query: 122 PHGQKSDWIMHEYRLEDGDDAQ--SNEDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHH 179
           PHGQK+DWIMHEYRLEDG+D Q  +NEDGWV+CRVFKKKNLFKI       +N   S H+
Sbjct: 123 PHGQKTDWIMHEYRLEDGNDPQGSANEDGWVVCRVFKKKNLFKI-------VNEGGSTHN 175

Query: 180 HHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQH------------PELALHYSTSQMLPT 227
             QQ NN+S+ N +S+      REN YLL  Q             PELALHY     L  
Sbjct: 176 PDQQINNSSNTNARSY------RENHYLLHQQQNPRNSSGLELDKPELALHYP---HLQN 226

Query: 228 PQYCLFQPQALV----PNYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRYHHQQACE 283
           P Y LFQ Q L+    P       T+D+P  M KQLM+N  RDCESGS+ LRY   Q  E
Sbjct: 227 PPYSLFQSQPLLQIQKPMVYDYSYTSDTP-IMAKQLMTN-PRDCESGSDGLRY---QVSE 281

Query: 284 PGLEVGTCEPTATHQMVAATTGGRDGQGLNDWTMLDRLVT-----EDSSKGVTFED--PN 336
            G+EVG+CEP           G   G+G+N+W +LDRLVT     EDSSKGV FE+  P 
Sbjct: 282 SGMEVGSCEPN-------QEMGTGRGEGINEWGVLDRLVTSHLGNEDSSKGVRFEEANPP 334

Query: 337 AQHQINQLSLRGEMNFWGYEK 357
           + HQINQLSLRGEM+FW Y K
Sbjct: 335 SVHQINQLSLRGEMDFWAYGK 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801859|emb|CAN70403.1| hypothetical protein VITISV_038241 [Vitis vinifera]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/376 (66%), Positives = 281/376 (74%), Gaps = 36/376 (9%)

Query: 1   MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIG 60
           M SS GGVPPGFRFHPTDEELLHYYL+KKVS+QKFDMEVIREVDLNKMEPWELQERCRIG
Sbjct: 1   MTSSSGGVPPGFRFHPTDEELLHYYLKKKVSYQKFDMEVIREVDLNKMEPWELQERCRIG 60

Query: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGR 120
           STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNS+KKIGMRKTLVFYRGR
Sbjct: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYRGR 120

Query: 121 APHGQKSDWIMHEYRLEDGDDAQSN--EDGWVICRVFKKKNLFKIGNEQSSNINSSSSDH 178
           APHGQK+DWIMHEYRLED DD+  N  EDGWV+CRVFKKKNLFK+G E   + ++S +  
Sbjct: 121 APHGQKTDWIMHEYRLEDADDSPGNPSEDGWVVCRVFKKKNLFKLGTEGGGSSSASMAGS 180

Query: 179 HHHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCL-FQPQA 237
                 N +S+ +   H  +F  R+ QYL R Q   L  HYS    +PTPQY    Q Q 
Sbjct: 181 DQQLNINTSSTTD---HPRSFTHRDTQYLPRPQ--SLPFHYS---HIPTPQYSHNLQSQT 232

Query: 238 LVPNYSTI-----PSTADSPAAMVKQLMSNTSRDCES-GSENLRYHHQQACEPGLEVGTC 291
           L+P +  I     P  +DSP  M+KQLMSN  RDCES GSE+LRY   Q CEPG+EV TC
Sbjct: 233 LLPPHKPIXYDFSPLPSDSP-VMIKQLMSN-PRDCESAGSESLRY---QPCEPGMEVNTC 287

Query: 292 EPTATH--QMVAATTGGRDGQGLNDWTMLDRLVT------EDSSKGVTFEDPNAQ--HQI 341
           EP A H   MV     GR+ + L++W+MLDRLVT      + SSKGV FED N     Q+
Sbjct: 288 EPGAHHHQHMVGP---GRE-ESLSEWSMLDRLVTSHLSHEDSSSKGVRFEDGNGSSVQQM 343

Query: 342 NQLSLRGEMNFWGYEK 357
           NQLSLRGEM+FWGY K
Sbjct: 344 NQLSLRGEMDFWGYGK 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529901|ref|XP_003533525.1| PREDICTED: protein BEARSKIN1-like [Glycine max]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/382 (64%), Positives = 276/382 (72%), Gaps = 52/382 (13%)

Query: 2   ASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGS 61
           +S+ GGVPPGFRFHPTDEELLHYYL+KKVSFQKFDM+VIREVDLNKMEPW+LQERCRIGS
Sbjct: 3   SSTNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGS 62

Query: 62  TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRA 121
           TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNS+KKIGMRKTLVFY+GRA
Sbjct: 63  TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYKGRA 122

Query: 122 PHGQKSDWIMHEYRLEDGDDAQ--SNEDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHH 179
           PHGQK+DWIMHEYRLEDG+D Q  +NEDGWV+CRVFKKKNLFKI NE         S H 
Sbjct: 123 PHGQKTDWIMHEYRLEDGNDPQGSANEDGWVVCRVFKKKNLFKIENE-------GGSTHK 175

Query: 180 HHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQH------------PELALHYSTSQMLPT 227
              Q NN+S+ N +S+      REN YLL  Q             PELALHY     L  
Sbjct: 176 PDHQINNSSNTNARSY------RENHYLLHQQQNPRNSSGLELDKPELALHYPPPH-LQN 228

Query: 228 PQYCLFQPQALV----PNYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRYHHQQACE 283
           P Y LFQ Q L+    P       T+D+P  M KQLM+N  RDCESGS+ LRY   Q  E
Sbjct: 229 PPYSLFQSQPLLQTQKPMVYDYSYTSDTP-IMAKQLMTN-PRDCESGSDGLRY---QVSE 283

Query: 284 PGLEVGTCEPTATHQMVAATTGGRDGQGLNDWTMLDRLVT------EDSSKGVTFEDPNA 337
            G+EVG+CEP           G   G+G+N+W +LDRLVT      EDSSKGV FE+ N 
Sbjct: 284 SGMEVGSCEPN-------QEMGTGRGEGINEWGVLDRLVTSHLAGNEDSSKGVRFEEANP 336

Query: 338 Q--HQINQLSLRGEMNFWGYEK 357
           Q  HQINQLSLRGEM+FW Y K
Sbjct: 337 QSVHQINQLSLRGEMDFWAYGK 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585878|ref|XP_002533613.1| NAC domain-containing protein, putative [Ricinus communis] gi|223526498|gb|EEF28767.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/370 (67%), Positives = 274/370 (74%), Gaps = 41/370 (11%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           VPPGFRFHPTDEELLHYYL+KKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW
Sbjct: 18  VPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 77

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN+YKKIGMRKTLVFYRGRAPHGQK+
Sbjct: 78  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNNYKKIGMRKTLVFYRGRAPHGQKT 137

Query: 128 DWIMHEYRLEDGDDA--QSNEDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHHHHQQFN 185
           DWIMHEYRLEDGDD    SNEDGWV+CRVFKKKNLFK+GNE +++INSS      HQ  N
Sbjct: 138 DWIMHEYRLEDGDDVNGNSNEDGWVVCRVFKKKNLFKVGNEATTSINSSD-----HQHLN 192

Query: 186 NTSSNNHQS-HTSAFMQRENQYLLRGQ------HPELALHYSTSQMLPTPQYCLFQPQAL 238
           + S+N   +    +FM R++Q LLR Q       PELALH+    M  T QY LFQ Q L
Sbjct: 193 SNSNNPSITIQPRSFMHRDSQLLLRDQLPFELNKPELALHHYPHNMA-TSQYSLFQVQTL 251

Query: 239 VPNYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRYHHQQACEPGLEVGTCEPTATHQ 298
           +P   T P   D           N +RDCESGSE+LRY      + GL+VG+CEPT  H 
Sbjct: 252 MPT-QTKPVGYDQ--------YPNPARDCESGSESLRYD-----QAGLDVGSCEPTHHHH 297

Query: 299 MVAATTGGRD--GQGLND-WTMLDRLVT-----EDSSKGVTFEDPNAQ--HQINQLSLRG 348
                  GRD  G GLND W MLDR+VT     +DSSKGV FED NA   + IN LSLRG
Sbjct: 298 QQQMGI-GRDEGGAGLNDQWAMLDRIVTPHIGEDDSSKGVRFEDANASSVNPINHLSLRG 356

Query: 349 E-MNFWGYEK 357
           E M+FWGY K
Sbjct: 357 EMMDFWGYGK 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126579|ref|XP_002319872.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222858248|gb|EEE95795.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/382 (64%), Positives = 268/382 (70%), Gaps = 73/382 (19%)

Query: 1   MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIG 60
           MA+S GGVPPGFRFHPT+EELLHYYL+KKVSFQKFDMEVIREVDLNKMEPWELQE C+IG
Sbjct: 1   MATSTGGVPPGFRFHPTEEELLHYYLKKKVSFQKFDMEVIREVDLNKMEPWELQETCKIG 60

Query: 61  STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGR 120
           STPQNEWYFFSH+DRKYPTGSRTNRATNAGFWKATGRDKCIRN+ KKIGMRKTLVFYRGR
Sbjct: 61  STPQNEWYFFSHRDRKYPTGSRTNRATNAGFWKATGRDKCIRNTDKKIGMRKTLVFYRGR 120

Query: 121 APHGQKSDWIMHEYRLEDGDDAQSN--EDGWVICRVFKKKNLFKIGNEQSSNINSSSSDH 178
           APHGQK+DWIMHEYRLEDGDDAQ N  EDGWV+CRVFKKKNLFK+ NE     +  SSD 
Sbjct: 121 APHGQKTDWIMHEYRLEDGDDAQGNAGEDGWVVCRVFKKKNLFKVSNE-GGTASMDSSDQ 179

Query: 179 HHHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQH-------------PELALHYSTSQML 225
             H     TSSN  QS TS  M R++QYL+R  H             PELAL++     +
Sbjct: 180 QLH-----TSSN--QSRTS--MYRDSQYLIRQHHNHGSTQQTFEPNKPELALYH---HHM 227

Query: 226 PTP-QYCLFQPQALVP-------NYSTIPSTADSPAAMVKQLMSNTSRDCESGSENLRYH 277
            TP QY LF  Q L+P       +YS +PS                        E+LRY 
Sbjct: 228 ETPHQYSLFPSQTLMPTHKPLGYDYSALPS-----------------------DESLRY- 263

Query: 278 HQQACEPGLEVGTCEPTATHQMVAATTGGRDGQGLND-WTML--DRLVTEDSSKGVTFED 334
             QACEPGLEVGTCE  A  QMVA    GRD QG+ND W +L    L  EDSSKGVTF  
Sbjct: 264 --QACEPGLEVGTCE--APQQMVA----GRDEQGMNDQWAVLVTSHLGNEDSSKGVTFNA 315

Query: 335 PNA--QHQINQLSLRGEMNFWG 354
            NA   H INQ SLRGEM+FWG
Sbjct: 316 ANAPSAHPINQSSLRGEMDFWG 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235031|ref|NP_192773.1| protein BEARSKIN1 [Arabidopsis thaliana] gi|75266399|sp|Q9SV87.1|BRN2_ARATH RecName: Full=Protein BEARSKIN1; AltName: Full=NAC domain-containing protein 70; Short=ANAC070 gi|4538964|emb|CAB39788.1| NAM/NAP like protein [Arabidopsis thaliana] gi|7267732|emb|CAB78158.1| NAM/NAP like protein [Arabidopsis thaliana] gi|22136592|gb|AAM91615.1| putative NAM/NAP [Arabidopsis thaliana] gi|332657470|gb|AEE82870.1| protein BEARSKIN1 [Arabidopsis thaliana]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/372 (60%), Positives = 260/372 (69%), Gaps = 49/372 (13%)

Query: 2   ASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGS 61
           +SS GGVPPGFRFHPTDEELLHYYL+KK+S+QKF+MEVIREVDLNK+EPW+LQERC+IGS
Sbjct: 3   SSSNGGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGS 62

Query: 62  TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRA 121
           TPQNEWYFFSHKDRKYPTGSRTNRAT+AGFWKATGRDKCIRNSYKKIGMRKTLVFY+GRA
Sbjct: 63  TPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRA 122

Query: 122 PHGQKSDWIMHEYRLEDGDDAQSN--EDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHH 179
           PHGQK+DWIMHEYRLED DD Q+N  EDGWV+CRVF KKNLFK+ NE SS+IN  S D H
Sbjct: 123 PHGQKTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMKKNLFKVVNEGSSSIN--SLDQH 180

Query: 180 HHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCLFQPQALV 239
           +H    + S+NNH     +FM R++ Y L   H  +         L  P   L Q     
Sbjct: 181 NH----DASNNNHALQARSFMHRDSPYQLVRNHGAMTFE------LNKPDLALHQ----- 225

Query: 240 PNYSTIPSTADSPAAMVKQLMSNTSRDCES-GSENLRYHHQQACEPGLEVGTCEPTATHQ 298
                 P     P ++     S  +RD ES  SE L+Y  QQACEPGL+VGTCE  A+H 
Sbjct: 226 -----YPPIFHKPPSLGFDYSSGLARDSESAASEGLQY--QQACEPGLDVGTCETVASHN 278

Query: 299 MVAATTGGRDGQGLNDWTMLDRLVT-----EDSSKGVTFEDPNAQHQ--------INQLS 345
                      QGL +W M+DRLVT     EDSS+G+T+ED N             NQL+
Sbjct: 279 ---------HQQGLGEWAMMDRLVTCHMGNEDSSRGITYEDGNNNSSSVVQPVPATNQLT 329

Query: 346 LRGEMNFWGYEK 357
           LR EM+FWGY K
Sbjct: 330 LRSEMDFWGYSK 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813473|ref|XP_002874620.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320457|gb|EFH50879.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/372 (60%), Positives = 262/372 (70%), Gaps = 48/372 (12%)

Query: 2   ASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGS 61
           +SS GGVPPGFRFHPTDEELLHYYL+KK+S+QKF+MEVIREVDLNK+EPW+LQERC+IGS
Sbjct: 3   SSSNGGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGS 62

Query: 62  TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRA 121
           TPQNEWYFFSHKDRKYPTGSRTNRAT+AGFWKATGRDKCIRNSYKKIGMRKTLVFY+GRA
Sbjct: 63  TPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRA 122

Query: 122 PHGQKSDWIMHEYRLEDGDDAQSN--EDGWVICRVFKKKNLFKIGNEQSSNINSSSSDHH 179
           PHGQK+DWIMHEYRLED DD Q+N  EDGWV+CRVF KKNLFK+ NE  ++IN  SSD H
Sbjct: 123 PHGQKTDWIMHEYRLEDPDDPQANPSEDGWVVCRVFMKKNLFKVVNEGGTSIN--SSDQH 180

Query: 180 HHQQFNNTSSNNHQSHTSAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYCLFQPQALV 239
           +H    + S+NNH     +FM R++ Y L      +  H +T+  L  P   L Q     
Sbjct: 181 NH----DASNNNHTLQARSFMHRDSPYQL------VRNHGATTFELNKPDLTLHQ----- 225

Query: 240 PNYSTIPSTADSPAAMVKQLMSNTSRDCES-GSENLRYHHQQACEPGLEVGTCEPTATHQ 298
                 P     P ++     S  +RDCES  SE L+Y  QQACEPGLEVGTC   A+H 
Sbjct: 226 -----YPPIFHKPPSLGFDYSSGLARDCESAASEGLQY--QQACEPGLEVGTCGTVASHD 278

Query: 299 MVAATTGGRDGQGLNDWTMLDRLVT-----EDSSKGVTFEDPNAQHQ--------INQLS 345
                      QGL +W M+DRLVT     EDSS+G+ FED N             NQL+
Sbjct: 279 --------SHQQGLGEWAMMDRLVTCHMGNEDSSRGIRFEDGNNNSSSVVQPVPATNQLT 330

Query: 346 LRGEMNFWGYEK 357
           LR EM+FWGY K
Sbjct: 331 LRSEMDFWGYSK 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2196641	305	NAC015 "NAC domain containing	0.462	0.540	0.843	5.6e-88
TAIR|locus:2122804	341	NAC070 "NAC domain containing	0.761	0.797	0.590	4.4e-84
TAIR|locus:2019833	371	SMB "SOMBRERO" [Arabidopsis th	0.442	0.425	0.760	3.3e-71
TAIR|locus:2035604	358	NAC012 "NAC domain containing	0.436	0.435	0.738	1.1e-68
UNIPROTKB|Q5Z6B6	276	NAC76 "NAC domain-containing p	0.439	0.568	0.730	1.8e-64
TAIR|locus:2079562	334	NAC066 "NAC domain protein 66"	0.434	0.464	0.664	1.6e-63
TAIR|locus:2044360	365	NST1 "NAC SECONDARY WALL THICK	0.442	0.432	0.676	3.3e-63
TAIR|locus:2026232	394	ANAC026 "Arabidopsis NAC domai	0.422	0.383	0.701	5.4e-63
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.422	0.413	0.721	1.4e-62
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.422	0.400	0.728	1.8e-62

TAIR|locus:2196641 NAC015 "NAC domain containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
 Identities = 140/166 (84%), Positives = 160/166 (96%)

Query:     1 MASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIG 60
             M+SS GGVPPGFRFHPTDEELLHYYL+KK+S++KF+MEVI+EVDLNK+EPW+LQ+RC+IG
Sbjct:     1 MSSSNGGVPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIG 60

Query:    61 STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGR 120
             STPQNEWYFFSHKDRKYPTGSRTNRAT++GFWKATGRDKCIRNSYKKIGMRKTLVFY+GR
Sbjct:    61 STPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKKIGMRKTLVFYKGR 120

Query:   121 APHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFKIGNE 166
             APHGQK+DWIMHEYR+ED +D    EDGWV+CRVFKKKNLFK+GN+
Sbjct:   121 APHGQKTDWIMHEYRIEDTEDDPC-EDGWVVCRVFKKKNLFKVGND 165

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2122804 NAC070 "NAC domain containing protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 169/286 (59%), Positives = 200/286 (69%)

Query:     2 ASSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGS 61
             +SS GGVPPGFRFHPTDEELLHYYL+KK+S+QKF+MEVIREVDLNK+EPW+LQERC+IGS
Sbjct:     3 SSSNGGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGS 62

Query:    62 TPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRA 121
             TPQNEWYFFSHKDRKYPTGSRTNRAT+AGFWKATGRDKCIRNSYKKIGMRKTLVFY+GRA
Sbjct:    63 TPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRA 122

Query:   122 PHGQKSDWIMHEYRLEDGDDAQSN--EDGWVICRVFKKKNLFKIGNEXXXXXXXXXXXXX 179
             PHGQK+DWIMHEYRLED DD Q+N  EDGWV+CRVF KKNLFK+ NE             
Sbjct:   123 PHGQKTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMKKNLFKVVNEGSSSINSLDQHNH 182

Query:   180 XXXXXXXXXXXXXXXXXXAFMQRENQYLLRGQHPELALHYSTSQMLPTPQYC-LF-QPQA 237
                               +FM R++ Y L   H  +    +    L   QY  +F +P +
Sbjct:   183 DASNNNHALQAR------SFMHRDSPYQLVRNHGAMTFELNKPD-LALHQYPPIFHKPPS 235

Query:   238 LVPNYST-IPSTADSPAAMVKQLMSNTSRDCESGS-ENLRYH-HQQ 280
             L  +YS+ +   ++S A+   Q         + G+ E +  H HQQ
Sbjct:   236 LGFDYSSGLARDSESAASEGLQYQQACEPGLDVGTCETVASHNHQQ 281

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2019833 SMB "SOMBRERO" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 124/163 (76%), Positives = 146/163 (89%)

Query:     4 SGGG---VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIG 60
             +GGG   VPPGFRFHPT+EELL+YYL+KKVS++  D++VIREVDLNK+EPWEL+E+CRIG
Sbjct:    10 AGGGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRIG 69

Query:    61 STPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIR-NSYKKIGMRKTLVFYRG 119
             S PQNEWYFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I  NS KKIG+RKTLVFY G
Sbjct:    70 SGPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLRKTLVFYTG 129

Query:   120 RAPHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKNLFK 162
             RAPHGQK++WIMHEYRL+D ++ +  EDGWV+CRVFKKKN F+
Sbjct:   130 RAPHGQKTEWIMHEYRLDDSEN-EIQEDGWVVCRVFKKKNHFR 171

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010455 "positive regulation of cell fate commitment" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0003002 "regionalization" evidence=IMP

TAIR|locus:2035604 NAC012 "NAC domain containing protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
 Identities = 124/168 (73%), Positives = 144/168 (85%)

Query:     8 VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
             VPPGFRFHPT+EELLHYYLRKKV+ QK D++VIREVDLNK+EPW++QE CRIGSTPQN+W
Sbjct:    16 VPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRIGSTPQNDW 75

Query:    68 YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
             YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I +  ++IG+RKTLVFY+GRAPHGQKS
Sbjct:    76 YFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSCVRRIGLRKTLVFYKGRAPHGQKS 135

Query:   128 DWIMHEYRLED-----G------DDAQS-NEDGWVICRVFKKKNLFKI 163
             DWIMHEYRL+D     G      +D  S NE+GWV+CRVF+KKN  KI
Sbjct:   136 DWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKKNYQKI 183

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IGI;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q5Z6B6 NAC76 "NAC domain-containing protein 76" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 119/163 (73%), Positives = 140/163 (85%)

Query:     1 MASSGGG--VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCR 58
             M  SGG   VPPGFRFHPTDEELL+YYLRKKV+++  D++VIRE+DLNK+EPW+L++RCR
Sbjct:     1 MHPSGGALSVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCR 60

Query:    59 IGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI--RNSYKKIGMRKTLVF 116
             IG+ PQNEWYFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I   N+ + IGMRKTLVF
Sbjct:    61 IGTGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANACR-IGMRKTLVF 119

Query:   117 YRGRAPHGQKSDWIMHEYRLEDGDDAQSNEDGWVICRVFKKKN 159
             Y GRAPHG+K+DWIMHEYRL D D+    EDGWV+CRVF KK+
Sbjct:   120 YVGRAPHGKKTDWIMHEYRL-DQDNVDVQEDGWVVCRVFMKKS 161

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=ISS

GO:0048829 "root cap development" evidence=ISS

TAIR|locus:2079562 NAC066 "NAC domain protein 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 113/170 (66%), Positives = 137/170 (80%)

Query:     8 VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
             VPPGFRFHPT+EELL YYLRKK+S  K D++VI ++DLNK+EPW++QE C+IG+TPQN+W
Sbjct:    11 VPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTTPQNDW 70

Query:    68 YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
             YF+SHKD+KYPTG+RTNRAT  GFWKATGRDK I  +  +IGMRKTLVFY+GRAPHGQKS
Sbjct:    71 YFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYTNGDRIGMRKTLVFYKGRAPHGQKS 130

Query:   128 DWIMHEYRLED-------GD--------DAQSNEDGWVICRVFKKKNLFK 162
             DWIMHEYRL++       GD        D   +++GWV+CRVFKK NL K
Sbjct:   131 DWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRVFKKNNLCK 180

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0009901 "anther dehiscence" evidence=IGI

GO:0016020 "membrane" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2044360 NST1 "NAC SECONDARY WALL THICKENING PROMOTING FACTOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 117/173 (67%), Positives = 142/173 (82%)

Query:     8 VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
             VPPGFRFHPT+EELL YYLRKKV+  + D++VIR+VDLNK+EPW++QE C+IG+TPQN+W
Sbjct:    16 VPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQNDW 75

Query:    68 YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
             YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I ++ ++IGMRKTLVFY+GRAPHGQKS
Sbjct:    76 YFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPHGQKS 135

Query:   128 DWIMHEYRLEDG----DDAQ-----------SNEDGWVICRVFKKKNLFKIGN 165
             DWIMHEYRL+D     +D             S ++GWV+CR+FKKKNL K  N
Sbjct:   136 DWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKKNLHKTLN 188

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IGI;IMP

GO:0009901 "anther dehiscence" evidence=IGI

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2026232 ANAC026 "Arabidopsis NAC domain containing protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 106/151 (70%), Positives = 130/151 (86%)

Query:     8 VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
             VPPGFRFHPTDEEL+ YYLRKKV+ ++ ++++I++VDL K+EP +LQE C+IG+  Q+EW
Sbjct:     7 VPPGFRFHPTDEELVDYYLRKKVASKRIEIDIIKDVDLYKIEPCDLQELCKIGNEEQSEW 66

Query:    68 YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
             YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I   +  IGMRKTLVFY+GRAP+GQKS
Sbjct:    67 YFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYIRHSLIGMRKTLVFYKGRAPNGQKS 126

Query:   128 DWIMHEYRLEDGDDAQSNEDGWVICRVFKKK 158
             DWIMHEYRLE  ++    E+GWV+CRVFKKK
Sbjct:   127 DWIMHEYRLETSENGTPQEEGWVVCRVFKKK 157

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 109/151 (72%), Positives = 132/151 (87%)

Query:     8 VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
             VPPGFRFHPTDEEL+ YYLRKK++ QK D++VIR++DL ++EPW+LQE+CRIG   QNEW
Sbjct:     9 VPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIRDIDLYRIEPWDLQEQCRIGYEEQNEW 68

Query:    68 YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
             YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK + +  K IGMRKTLVFY+GRAP+G+KS
Sbjct:    69 YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGKKS 128

Query:   128 DWIMHEYRLEDGDDAQSNEDGWVICRVFKKK 158
             DWIMHEYRLE  ++A   E+GWV+CR FKK+
Sbjct:   129 DWIMHEYRLESDENAPPQEEGWVVCRAFKKR 159

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 110/151 (72%), Positives = 131/151 (86%)

Query:     8 VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
             VPPGFRFHPTDEEL+ YYLRKKV+ QK D++VIR++DL ++EPW+LQE CRIG   +NEW
Sbjct:    10 VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQESCRIGYEERNEW 69

Query:    68 YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
             YFFSHKD+KYPTG+RTNRAT AGFWKATGRDK + +  K IGMRKTLVFY+GRAP+GQK+
Sbjct:    70 YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKT 129

Query:   128 DWIMHEYRLEDGDDAQSNEDGWVICRVFKKK 158
             DWIMHEYRLE  ++A   E+GWV+CR FKKK
Sbjct:   130 DWIMHEYRLESDENAPPQEEGWVVCRAFKKK 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SV87	BRN2_ARATH	No assigned EC number	0.6048	0.9047	0.9472	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC066 NAC domain protein, IPR003441 (368 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	1e-74

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  226 bits (578), Expect = 1e-74
 Identities = 79/131 (60%), Positives = 101/131 (77%), Gaps = 4/131 (3%)

Query: 9   PPGFRFHPTDEELLHYYLRKKVSFQKFD-MEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           PPGFRFHPTDEEL+ YYL++KV  +    ++VI EVD+ K EPW+L +    G     EW
Sbjct: 2   PPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGG--DREW 59

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKK-IGMRKTLVFYRGRAPHGQK 126
           YFFS +DRKYP GSRTNRAT +G+WKATG+DK + +   + +GM+KTLVFY+GRAP G+K
Sbjct: 60  YFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEK 119

Query: 127 SDWIMHEYRLE 137
           +DW+MHEYRLE
Sbjct: 120 TDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=2.5e-41  Score=288.48  Aligned_cols=127  Identities=51%  Similarity=1.062  Sum_probs=96.5

Q ss_pred             CCCCceeCCChHHHHHHHHHHHHcCCCCCc-cceeeecCCCCCChhhhhhhccCCCCCCeeEEEeecCCcCCCCCccccc
Q 042376            8 VPPGFRFHPTDEELLHYYLRKKVSFQKFDM-EVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRA   86 (357)
Q Consensus         8 LPPGfRF~PTDEELI~~YLr~KI~g~pl~~-~vI~evDVY~~ePweLp~~~~~g~~~d~eWYFFspr~rK~~~GsR~~Ra   86 (357)
                      |||||||+|||+|||.+||++|+.+.+++. ++|.++|||++|||+|+....   ..+++||||+++++++.++.|.+|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~---~~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFK---GGDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSS---S-SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhcc---CCCceEEEEEecccccCCccccccc
Confidence            899999999999999999999999999886 799999999999999995322   2467999999999999999999999


Q ss_pred             cCCCeeeecCCCeEEec-CCeeeeeEEEEEEeeCCCCCCCCcCeEEEEEEeC
Q 042376           87 TNAGFWKATGRDKCIRN-SYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLE  137 (357)
Q Consensus        87 tggG~WK~tG~~K~I~~-~g~vIG~KKtLvFY~gr~p~g~KTgWvMhEYrL~  137 (357)
                      +++|+||.+|+.+.|.+ ++++||+|++|+||.++.+.+.+|+|+||||+|.
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999999987 8999999999999998888889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	357
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-42
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		3e-42
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		3e-42

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 107/154 (69%), Gaps = 5/154 (3%)
Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRF+PTDEEL+  YL +K +   F +++I E+DL K +PW L  +   G   + EW
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEW 76
Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFFS +DRKYP GSR NR   +G+WKATG DK I    +++G++K LVFY G+AP G K+
Sbjct: 77  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 136
Query: 128 DWIMHEYRLEDGD--DAQSNEDGWVICRVFKKKN 159
           +WIMHEYRL +    +  +  D WV+CR++KK++
Sbjct: 137 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 170

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/159 (51%), Positives = 108/159 (67%), Gaps = 10/159 (6%)
Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRFHPTD+EL+ +YL +K + Q+  + +I EVDL K +PW+L ER   G+    EW
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGA---REW 71
Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFF+ +DRKYP GSR NRA   G+WKATG DK +    + +G++K LVFY G+AP G K+
Sbjct: 72  YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKT 131
Query: 128 DWIMHEYRLEDGDDAQSNE-------DGWVICRVFKKKN 159
           DWIMHEYRL D   A +         D WV+CR++ KKN
Sbjct: 132 DWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 107/154 (69%), Gaps = 5/154 (3%)
Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRF+PTDEEL+  YL +K +   F +++I E+DL K +PW L  +   G   + EW
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEW 73
Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFFS +DRKYP GSR NR   +G+WKATG DK I    +++G++K LVFY G+AP G K+
Sbjct: 74  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 133
Query: 128 DWIMHEYRLEDGD--DAQSNEDGWVICRVFKKKN 159
           +WIMHEYRL +    +  +  D WV+CR++KK++
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
1ut7_A	171	No apical meristem protein; transcription regulati	5e-99
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-98

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  289 bits (742), Expect = 5e-99
 Identities = 76/154 (49%), Positives = 105/154 (68%), Gaps = 5/154 (3%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRF+PTDEEL+  YL +K +   F +++I E+DL K +PW L  +   G     EW
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGE---KEW 73

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFFS +DRKYP GSR NR   +G+WKATG DK I    +++G++K LVFY G+AP G K+
Sbjct: 74  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKT 133

Query: 128 DWIMHEYRLEDGDDAQSN--EDGWVICRVFKKKN 159
           +WIMHEYRL +      +   D WV+CR++KK++
Sbjct: 134 NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 167

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  288 bits (738), Expect = 2e-98
 Identities = 82/162 (50%), Positives = 110/162 (67%), Gaps = 10/162 (6%)

Query: 8   VPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEW 67
           +PPGFRFHPTD+EL+ +YL +K + Q+  + +I EVDL K +PW+L ER   G+    EW
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGA---REW 71

Query: 68  YFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKS 127
           YFF+ +DRKYP GSR NRA   G+WKATG DK +    + +G++K LVFY G+AP G K+
Sbjct: 72  YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKT 131

Query: 128 DWIMHEYRLEDGDDAQSN-------EDGWVICRVFKKKNLFK 162
           DWIMHEYRL D   A +         D WV+CR++ KKN ++
Sbjct: 132 DWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=6.8e-53  Score=379.54  Aligned_cols=155  Identities=52%  Similarity=1.021  Sum_probs=135.2

Q ss_pred             CCCCCCCCCceeCCChHHHHHHHHHHHHcCCCCCccceeeecCCCCCChhhhhhhccCCCCCCeeEEEeecCCcCCCCCc
Q 042376            3 SSGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSR   82 (357)
Q Consensus         3 ~~~~~LPPGfRF~PTDEELI~~YLr~KI~g~pl~~~vI~evDVY~~ePweLp~~~~~g~~~d~eWYFFspr~rK~~~GsR   82 (357)
                      ....+|||||||+|||||||.+||++|+.|.+++.++|.++|||++|||+|++.+..   ++++||||+++++|+++|.|
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~---g~~ewYFFs~r~~ky~~g~R   86 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF---GAREWYFFTPRDRKYPNGSR   86 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS---CSSEEEEEEECCC-----CC
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc---CCceEEEEeccccccCCCCC
Confidence            345589999999999999999999999999999999999999999999999987643   36899999999999999999


Q ss_pred             cccccCCCeeeecCCCeEEecCCeeeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCC-------CCCCceEEEEEE
Q 042376           83 TNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQ-------SNEDGWVICRVF  155 (357)
Q Consensus        83 ~~RatggG~WK~tG~~K~I~~~g~vIG~KKtLvFY~gr~p~g~KTgWvMhEYrL~~~~~~~-------~~~d~~VLCRIy  155 (357)
                      .+|++++||||++|+++.|..++++||+||+|+||.++++++.||+|+||||+|.+.....       ...++|||||||
T Consensus        87 ~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf  166 (174)
T 3ulx_A           87 PNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY  166 (174)
T ss_dssp             SCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEE
T ss_pred             ceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEE
Confidence            9999999999999999999988999999999999999999999999999999999864321       245789999999


Q ss_pred             EeCCc
Q 042376          156 KKKNL  160 (357)
Q Consensus       156 kK~~~  160 (357)
                      +|++.
T Consensus       167 ~K~~~  171 (174)
T 3ulx_A          167 NKKNE  171 (174)
T ss_dssp             ESCC-
T ss_pred             EcCCC
Confidence            99874

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.4e-52  Score=374.95  Aligned_cols=154  Identities=49%  Similarity=0.998  Sum_probs=131.0

Q ss_pred             CCCCCCCCceeCCChHHHHHHHHHHHHcCCCCCccceeeecCCCCCChhhhhhhccCCCCCCeeEEEeecCCcCCCCCcc
Q 042376            4 SGGGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRT   83 (357)
Q Consensus         4 ~~~~LPPGfRF~PTDEELI~~YLr~KI~g~pl~~~vI~evDVY~~ePweLp~~~~~g~~~d~eWYFFspr~rK~~~GsR~   83 (357)
                      ...+|||||||+|||||||.+||++|+.+.+++.++|+++|||.+|||+|++....   ++++||||+++++|+++|.|+
T Consensus        13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~---g~~ewyFFs~r~~k~~~g~R~   89 (171)
T 1ut7_A           13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF---GEKEWYFFSPRDRKYPNGSRP   89 (171)
T ss_dssp             CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS---CSSEEEEEEECCC-------C
T ss_pred             cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhc---CCccEEEEeccccccCCCCcc
Confidence            34579999999999999999999999999999999999999999999999998643   468999999999999999999


Q ss_pred             ccccCCCeeeecCCCeEEecCCeeeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCC--CCCCceEEEEEEEeCCc
Q 042376           84 NRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQ--SNEDGWVICRVFKKKNL  160 (357)
Q Consensus        84 ~RatggG~WK~tG~~K~I~~~g~vIG~KKtLvFY~gr~p~g~KTgWvMhEYrL~~~~~~~--~~~d~~VLCRIykK~~~  160 (357)
                      +|++++||||++|+++.|..++.+||+||+|+||+++++++.||+|+||||+|.......  ...++|||||||+|+..
T Consensus        90 ~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A           90 NRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             CEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred             cccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence            999999999999999999988899999999999999999999999999999999875321  34689999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	357
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	5e-66

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  204 bits (519), Expect = 5e-66
 Identities = 76/152 (50%), Positives = 104/152 (68%), Gaps = 5/152 (3%)

Query: 9   PPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWY 68
           PPGFRF+PTDEEL+  YL +K +   F +++I E+DL K +PW L  +   G   + EWY
Sbjct: 18  PPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWY 74

Query: 69  FFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSD 128
           FFS +DRKYP GSR NR   +G+WKATG DK I    +++G++K LVFY G+AP G K++
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTN 134

Query: 129 WIMHEYRLEDGDDAQSN--EDGWVICRVFKKK 158
           WIMHEYRL +      +   D WV+CR++KK+
Sbjct: 135 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-50  Score=357.09  Aligned_cols=150  Identities=50%  Similarity=1.019  Sum_probs=128.6

Q ss_pred             CCCCCCceeCCChHHHHHHHHHHHHcCCCCCccceeeecCCCCCChhhhhhhccCCCCCCeeEEEeecCCcCCCCCcccc
Q 042376            6 GGVPPGFRFHPTDEELLHYYLRKKVSFQKFDMEVIREVDLNKMEPWELQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNR   85 (357)
Q Consensus         6 ~~LPPGfRF~PTDEELI~~YLr~KI~g~pl~~~vI~evDVY~~ePweLp~~~~~g~~~d~eWYFFspr~rK~~~GsR~~R   85 (357)
                      -+|||||||+|||||||.+||++|+.|.+++.++|+++|||++|||+|++...   ..+++||||+++++++++++|.+|
T Consensus        15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~---~~~~~wyFft~~~~k~~~g~r~~R   91 (166)
T d1ut7a_          15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL---FGEKEWYFFSPRDRKYPNGSRPNR   91 (166)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS---SCSSEEEEEEECCC-------CCE
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhc---cCcceEEEEeeeccccCCCCcccc
Confidence            46999999999999999999999999999999999999999999999998753   246889999999999999999999


Q ss_pred             ccCCCeeeecCCCeEEecCCeeeeeEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCC--CCCCceEEEEEEEeC
Q 042376           86 ATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLEDGDDAQ--SNEDGWVICRVFKKK  158 (357)
Q Consensus        86 atggG~WK~tG~~K~I~~~g~vIG~KKtLvFY~gr~p~g~KTgWvMhEYrL~~~~~~~--~~~d~~VLCRIykK~  158 (357)
                      ++++|+||++|+++.|.+++.+||+||+|+||+++++++.+|+|+||||+|.+.....  ...++|||||||+|+
T Consensus        92 ~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          92 VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             ccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            9999999999999999989999999999999999999999999999999998865432  345789999999985